DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.681e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.01168

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	4.6702	0.0968

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

295 significant hits at p-value < 0.001.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	14894979	2L_14894979_SNP [dm3] 2L_14894979_SNP [dm6]	A	C	7.553e^-9	2.466e^-4	INTERGENIC
2L	19799133	2L_19799133_SNP [dm3] 2L_19799133_SNP [dm6]	A	T	7.553e^-9	2.466e^-4	INTRON sick
2L	19799137	2L_19799137_SNP [dm3] 2L_19799137_SNP [dm6]	G	A	7.553e^-9	2.466e^-4	INTRON sick
2L	21914402	2L_21914402_SNP [dm3] 2L_21914402_SNP [dm6]	A	T	7.553e^-9	2.466e^-4	UTR_3_PRIME CG31600
2L	3720614	2L_3720614_SNP [dm3] 2L_3720614_SNP [dm6]	G	A	7.553e^-9	2.466e^-4	UPSTREAM Shaw INTRON Shaw
2L	8589492	2L_8589492_SNP [dm3] 2L_8589492_SNP [dm6]	T	C	7.553e^-9	2.466e^-4	DOWNSTREAM CR43855 INTRON Sema-1a	TF binding site mE1_TFBS_kn
2L	9052119	2L_9052119_SNP [dm3] 2L_9052119_SNP [dm6]	T	G	7.553e^-9	2.466e^-4	UTR_3_PRIME CG31708
2R	12854179	2R_12854179_SNP [dm3] 2R_16966674_SNP [dm6]	A	T	7.553e^-9	2.466e^-4	INTERGENIC
2R	15263539	2R_15263539_SNP [dm3] 2R_19376034_SNP [dm6]	C	A	7.553e^-9	2.466e^-4	UPSTREAM CG10062 INTRON CG10062
2R	20973870	2R_20973870_SNP [dm3] 2R_25086347_SNP [dm6]	G	T	7.553e^-9	2.466e^-4	UTR_3_PRIME lov DOWNSTREAM lov	TF binding site mE1_TFBS_bab1
2R	6442487	2R_6442487_SNP [dm3] 2R_10554982_SNP [dm6]	A	G	7.553e^-9	2.466e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	8409806	2R_8409806_INS [dm3] 2R_12522301_INS [dm6]	G	GAATACA	7.553e^-9	2.466e^-4	DOWNSTREAM CG8569 INTRON CG33632
3L	16163764	3L_16163764_SNP [dm3] 3L_16170664_SNP [dm6]	A	C	7.553e^-9	2.466e^-4	UPSTREAM CG33796 DOWNSTREAM CG33795 INTERGENIC
3L	16935319	3L_16935319_INS [dm3] 3L_16942219_INS [dm6]	T	TT	7.553e^-9	2.466e^-4	INTRON Cpr73D
3R	11522883	3R_11522883_SNP [dm3] 3R_15697161_SNP [dm6]	A	C	7.553e^-9	2.466e^-4	UPSTREAM CR45635 DOWNSTREAM CG5399 INTERGENIC
X	12262426	X_12262426_SNP [dm3] X_12368393_SNP [dm6]	T	A	7.553e^-9	2.466e^-4	INTERGENIC
X	12331877	X_12331877_SNP [dm3] X_12437844_SNP [dm6]	C	T	7.553e^-9	2.466e^-4	INTRON Pkcdelta
X	14810618	X_14810618_SNP [dm3] X_14916585_SNP [dm6]	T	A	7.553e^-9	2.466e^-4	DOWNSTREAM Eo INTRON Flo2
X	17116780	X_17116780_SNP [dm3] X_17222747_SNP [dm6]	G	T	7.553e^-9	2.466e^-4	DOWNSTREAM CG34327 & 1 other INTERGENIC
X	17116787	X_17116787_SNP [dm3] X_17222754_SNP [dm6]	T	A	7.553e^-9	2.466e^-4	DOWNSTREAM CG34327 & 1 other INTERGENIC
X	18941054	X_18941054_SNP [dm3] X_19047021_SNP [dm6]	T	C	7.553e^-9	2.466e^-4	INTERGENIC
X	18941059	X_18941059_SNP [dm3] X_19047026_SNP [dm6]	C	T	7.553e^-9	2.466e^-4	INTERGENIC
X	3424027	X_3424027_SNP [dm3] X_3529994_SNP [dm6]	T	C	7.553e^-9	2.466e^-4	INTRON CG32791
X	3424034	X_3424034_SNP [dm3] X_3530001_SNP [dm6]	G	A	7.553e^-9	2.466e^-4	INTRON CG32791
X	3424041	X_3424041_SNP [dm3] X_3530008_SNP [dm6]	T	C	7.553e^-9	2.466e^-4	INTRON CG32791
2L	16497873	2L_16497873_SNP [dm3] 2L_16497873_SNP [dm6]	C	T	1.068e^-8	2.466e^-4	INTRON Tpr2
2L	1700871	2L_1700871_SNP [dm3] 2L_1700871_SNP [dm6]	C	A	1.068e^-8	2.466e^-4	UTR_3_PRIME chinmo
2L	3769159	2L_3769159_INS [dm3] 2L_3769159_INS [dm6]	A	ATGACAT	1.068e^-8	2.466e^-4	UTR_3_PRIME CG43707 DOWNSTREAM CR43704	TF binding site mE1_TFBS_HSA
2R	17592981	2R_17592981_SNP [dm3] 2R_21705476_SNP [dm6]	C	A	1.068e^-8	2.466e^-4	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	17592985	2R_17592985_SNP [dm3] 2R_21705480_SNP [dm6]	A	T	1.068e^-8	2.466e^-4	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	14043159	3L_14043159_SNP [dm3] 3L_14050059_SNP [dm6]	C	T	1.068e^-8	2.466e^-4	UPSTREAM blue INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15836309	3L_15836309_SNP [dm3] 3L_15843209_SNP [dm6]	C	A	1.068e^-8	2.466e^-4	DOWNSTREAM mir-263b INTRON CG32150	TF binding site mE1_TFBS_HSA
3L	15836322	3L_15836322_SNP [dm3] 3L_15843222_SNP [dm6]	T	G	1.068e^-8	2.466e^-4	DOWNSTREAM mir-263b INTRON CG32150	TF binding site mE1_TFBS_HSA
3L	18237416	3L_18237416_SNP [dm3] 3L_18244316_SNP [dm6]	C	A	1.068e^-8	2.466e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18237417	3L_18237417_INS [dm3] 3L_18244317_INS [dm6]	A	ATATATA	1.068e^-8	2.466e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18806425	3L_18806425_SNP [dm3] 3L_18813325_SNP [dm6]	A	T	1.068e^-8	2.466e^-4	INTRON CG14073
3L	18806435	3L_18806435_SNP [dm3] 3L_18813335_SNP [dm6]	G	T	1.068e^-8	2.466e^-4	INTRON CG14073
3L	2685097	3L_2685097_SNP [dm3] 3L_2685097_SNP [dm6]	A	G	1.068e^-8	2.466e^-4	INTRON Fife
3L	8813418	3L_8813418_SNP [dm3] 3L_8820318_SNP [dm6]	A	G	1.068e^-8	2.466e^-4	INTERGENIC
X	14722329	X_14722329_SNP [dm3] X_14828296_SNP [dm6]	C	T	1.068e^-8	2.466e^-4	INTRON CG14408	TF binding site BDTNP1_TFBS_dl
X	14722341	X_14722341_DEL [dm3] X_14828308_DEL [dm6]	TATGATCCAT	T	1.068e^-8	2.466e^-4	INTRON CG14408	TF binding site BDTNP1_TFBS_dl
X	19656721	X_19656721_SNP [dm3] X_19762688_SNP [dm6]	G	A	1.068e^-8	2.466e^-4	UTR_5_PRIME CG12702 UPSTREAM CG12702	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20024572	X_20024572_SNP [dm3] X_20130539_SNP [dm6]	C	G	1.068e^-8	2.466e^-4	DOWNSTREAM CG42582 INTERGENIC
X	9036199	X_9036199_SNP [dm3] X_9142166_SNP [dm6]	G	T	1.068e^-8	2.466e^-4	UPSTREAM CG7065 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13437669	2L_13437669_SNP [dm3] 2L_13437669_SNP [dm6]	G	A	1.308e^-8	2.466e^-4	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
2L	13437672	2L_13437672_SNP [dm3] 2L_13437672_SNP [dm6]	T	A	1.308e^-8	2.466e^-4	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
2L	13437673	2L_13437673_SNP [dm3] 2L_13437673_SNP [dm6]	C	T	1.308e^-8	2.466e^-4	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
2L	13437684	2L_13437684_SNP [dm3] 2L_13437684_SNP [dm6]	A	G	1.308e^-8	2.466e^-4	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
2L	14689887	2L_14689887_SNP [dm3] 2L_14689887_SNP [dm6]	A	C	1.308e^-8	2.466e^-4	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14689901	2L_14689901_SNP [dm3] 2L_14689901_SNP [dm6]	T	A	1.308e^-8	2.466e^-4	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5844077	2L_5844077_SNP [dm3] 2L_5844077_SNP [dm6]	T	C	1.308e^-8	2.466e^-4	INTRON TrissinR
2L	5844078	2L_5844078_SNP [dm3] 2L_5844078_SNP [dm6]	G	T	1.308e^-8	2.466e^-4	INTRON TrissinR
2L	6940259	2L_6940259_SNP [dm3] 2L_6940259_SNP [dm6]	T	C	1.308e^-8	2.466e^-4	INTRON CG18304	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
2R	11167941	2R_11167941_SNP [dm3] 2R_15280436_SNP [dm6]	G	A	1.308e^-8	2.466e^-4	INTRON Trpm
2R	5756777	2R_5756777_DEL [dm3] 2R_9869272_DEL [dm6]	TAA	T	1.308e^-8	2.466e^-4	DOWNSTREAM CR45138 INTRON cbx	transposable element FlyBase
3L	12623211	3L_12623211_SNP [dm3] 3L_12630111_SNP [dm6]	A	T	1.308e^-8	2.466e^-4	INTRON CR32111
3L	21945366	3L_21945366_SNP [dm3] 3L_21952266_SNP [dm6]	A	T	1.308e^-8	2.466e^-4	DOWNSTREAM CG7448 INTERGENIC
2R	21127947	2R_21127947_SNP [dm3] 2R_25240424_SNP [dm6]	C	T	1.488e^-8	2.466e^-4	INTRON CG9380
2R	9509784	2R_9509784_SNP [dm3] 2R_13622279_SNP [dm6]	A	G	1.488e^-8	2.466e^-4	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	2124809	3L_2124809_DEL [dm3] 3L_2124809_DEL [dm6]	AGTAAA	A	1.488e^-8	2.466e^-4	INTRON zormin
3R	13638795	3R_13638795_SNP [dm3] 3R_17813073_SNP [dm6]	T	C	1.488e^-8	2.466e^-4	INTRON tinc	TF binding site BDTNP1_TFBS_dl
X	13575010	X_13575010_SNP [dm3] X_13680977_SNP [dm6]	A	T	1.488e^-8	2.466e^-4	UPSTREAM CG12177 INTERGENIC
X	4244196	X_4244196_SNP [dm3] X_4350163_SNP [dm6]	A	T	1.488e^-8	2.466e^-4	INTRON norpA
2L	14169341	2L_14169341_SNP [dm3] 2L_14169341_SNP [dm6]	G	T	1.511e^-8	2.466e^-4	INTRON CG43333
2R	6382882	2R_6382882_SNP [dm3] 2R_10495377_SNP [dm6]	T	G	1.511e^-8	2.466e^-4	DOWNSTREAM lola INTRON lola
2R	7594514	2R_7594514_SNP [dm3] 2R_11707009_SNP [dm6]	A	T	1.511e^-8	2.466e^-4	UPSTREAM CR45377 INTERGENIC
2L	12055372	2L_12055372_SNP [dm3] 2L_12055372_SNP [dm6]	G	A	1.634e^-8	2.466e^-4	UPSTREAM RpL7-like & 1 other INTRON JhI-21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	12670113	2L_12670113_SNP [dm3] 2L_12670113_SNP [dm6]	G	T	1.634e^-8	2.466e^-4	UPSTREAM CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14759284	2L_14759284_SNP [dm3] 2L_14759284_SNP [dm6]	T	A	1.634e^-8	2.466e^-4	INTERGENIC
2L	16234725	2L_16234725_SNP [dm3] 2L_16234725_SNP [dm6]	G	C	1.634e^-8	2.466e^-4	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16234729	2L_16234729_SNP [dm3] 2L_16234729_SNP [dm6]	T	A	1.634e^-8	2.466e^-4	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4157343	2L_4157343_SNP [dm3] 2L_4157343_SNP [dm6]	C	A	1.634e^-8	2.466e^-4	INTERGENIC
2L	8693963	2L_8693963_SNP [dm3] 2L_8693963_SNP [dm6]	A	T	1.634e^-8	2.466e^-4	INTRON Hnf4
2L	9121515	2L_9121515_SNP [dm3] 2L_9121515_SNP [dm6]	T	A	1.634e^-8	2.466e^-4	DOWNSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10401226	2R_10401226_SNP [dm3] 2R_14513721_SNP [dm6]	T	A	1.634e^-8	2.466e^-4	UPSTREAM CG30197 INTRON Cpr51A
2R	1664570	2R_1664570_SNP [dm3] 2R_5777065_SNP [dm6]	T	C	1.634e^-8	2.466e^-4	INTRON ZnT41F
2R	6076534	2R_6076534_INS [dm3] 2R_10189029_INS [dm6]	A	AAAA	1.634e^-8	2.466e^-4	INTRON KCNQ
3L	18372048	3L_18372048_SNP [dm3] 3L_18378948_SNP [dm6]	A	T	1.634e^-8	2.466e^-4	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	2947025	3L_2947025_SNP [dm3] 3L_2947025_SNP [dm6]	C	A	1.634e^-8	2.466e^-4	DOWNSTREAM Shab INTRON Shab
3R	14182115	3R_14182115_SNP [dm3] 3R_18356393_SNP [dm6]	A	T	1.634e^-8	2.466e^-4	INTRON CG15803	TF binding site mE1_TFBS_chinmo
3R	14182118	3R_14182118_DEL [dm3] 3R_18356396_DEL [dm6]	ATGTAGATATT...	A	1.634e^-8	2.466e^-4	INTRON CG15803	TF binding site mE1_TFBS_chinmo
3R	14182134	3R_14182134_DEL [dm3] 3R_18356412_DEL [dm6]	TTAAAATT	T	1.634e^-8	2.466e^-4	INTRON CG15803	TF binding site mE1_TFBS_chinmo
3R	14376709	3R_14376709_SNP [dm3] 3R_18550987_SNP [dm6]	T	A	1.634e^-8	2.466e^-4	INTERGENIC
3R	17525623	3R_17525623_SNP [dm3] 3R_21699901_SNP [dm6]	G	A	1.634e^-8	2.466e^-4	INTRON CG31176
3R	17525633	3R_17525633_SNP [dm3] 3R_21699911_SNP [dm6]	C	T	1.634e^-8	2.466e^-4	INTRON CG31176
3R	19627351	3R_19627351_SNP [dm3] 3R_23801629_SNP [dm6]	G	C	1.634e^-8	2.466e^-4	UTR_3_PRIME mbc DOWNSTREAM CG33111
3R	20919936	3R_20919936_SNP [dm3] 3R_25094214_SNP [dm6]	T	C	1.634e^-8	2.466e^-4	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	24645762	3R_24645762_SNP [dm3] 3R_28820040_SNP [dm6]	T	G	1.634e^-8	2.466e^-4	UPSTREAM CG1647 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25750734	3R_25750734_SNP [dm3] 3R_29925012_SNP [dm6]	T	A	1.634e^-8	2.466e^-4	UPSTREAM Jon99Cii DOWNSTREAM Jon99Ci INTERGENIC
3R	7081277	3R_7081277_SNP [dm3] 3R_11255555_SNP [dm6]	A	C	1.634e^-8	2.466e^-4	EXON CR43283
X	10377910	X_10377910_DEL [dm3] X_10483877_DEL [dm6]	CT	A	1.634e^-8	2.466e^-4	INTRON CG32687
X	11801173	X_11801173_MNP [dm3] X_11907140_MNP [dm6]	GGT	AAG	1.634e^-8	2.466e^-4	UPSTREAM CG43156 DOWNSTREAM pot INTERGENIC
X	11801177	X_11801177_SNP [dm3] X_11907144_SNP [dm6]	A	G	1.634e^-8	2.466e^-4	UPSTREAM CG43156 DOWNSTREAM pot INTERGENIC
X	11801179	X_11801179_SNP [dm3] X_11907146_SNP [dm6]	G	A	1.634e^-8	2.466e^-4	UPSTREAM CG43156 DOWNSTREAM pot INTERGENIC
X	14872612	X_14872612_SNP [dm3] X_14978579_SNP [dm6]	G	T	1.634e^-8	2.466e^-4	INTRON eag
X	14872616	X_14872616_SNP [dm3] X_14978583_SNP [dm6]	G	A	1.634e^-8	2.466e^-4	INTRON eag
X	15555266	X_15555266_INS [dm3] X_15661233_INS [dm6]	A	ATAA	1.634e^-8	2.466e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15794593	X_15794593_SNP [dm3] X_15900560_SNP [dm6]	C	G	1.634e^-8	2.466e^-4	INTRON shi
2L	17425565	2L_17425565_SNP [dm3] 2L_17425565_SNP [dm6]	C	T	1.689e^-8	2.466e^-4	INTRON Dif
2R	15014311	2R_15014311_SNP [dm3] 2R_19126806_SNP [dm6]	A	G	1.689e^-8	2.466e^-4	UPSTREAM CG15117 INTRON CG15117
2R	6325111	2R_6325111_SNP [dm3] 2R_10437606_SNP [dm6]	T	A	1.689e^-8	2.466e^-4	UPSTREAM Galphao & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	6325112	2R_6325112_SNP [dm3] 2R_10437607_SNP [dm6]	G	T	1.689e^-8	2.466e^-4	UPSTREAM Galphao & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	12623096	3L_12623096_SNP [dm3] 3L_12629996_SNP [dm6]	C	T	1.689e^-8	2.466e^-4	INTRON CR32111
2L	11677945	2L_11677945_SNP [dm3] 2L_11677945_SNP [dm6]	T	A	2.104e^-8	2.472e^-4	INTERGENIC
2L	11677976	2L_11677976_SNP [dm3] 2L_11677976_SNP [dm6]	G	T	2.104e^-8	2.472e^-4	INTERGENIC
2L	13638934	2L_13638934_SNP [dm3] 2L_13638934_SNP [dm6]	A	T	2.104e^-8	2.472e^-4	UTR_3_PRIME kuz DOWNSTREAM kuz & 1 other
2L	13638950	2L_13638950_SNP [dm3] 2L_13638950_SNP [dm6]	A	T	2.104e^-8	2.472e^-4	UTR_3_PRIME kuz DOWNSTREAM kuz & 1 other
2L	14900768	2L_14900768_SNP [dm3] 2L_14900768_SNP [dm6]	A	G	2.104e^-8	2.472e^-4	INTERGENIC
2L	21323629	2L_21323629_SNP [dm3] 2L_21323629_SNP [dm6]	C	T	2.104e^-8	2.472e^-4	INTERGENIC
2L	7642472	2L_7642472_SNP [dm3] 2L_7642472_SNP [dm6]	A	C	2.104e^-8	2.472e^-4	UTR_3_PRIME Slob DOWNSTREAM Slob	TF binding site mE1_TFBS_bab1
2R	10401284	2R_10401284_SNP [dm3] 2R_14513779_SNP [dm6]	T	A	2.104e^-8	2.472e^-4	UPSTREAM CG30197 INTRON Cpr51A
2R	1739834	2R_1739834_SNP [dm3] 2R_5852329_SNP [dm6]	T	C	2.104e^-8	2.472e^-4	INTRON dpr12
2R	7106081	2R_7106081_SNP [dm3] 2R_11218576_SNP [dm6]	G	T	2.104e^-8	2.472e^-4	UPSTREAM Syx6 INTRON CG9084	TF binding site BDTNP1_TFBS_dl
2R	8590173	2R_8590173_SNP [dm3] 2R_12702668_SNP [dm6]	A	C	2.104e^-8	2.472e^-4	INTERGENIC
3L	14499640	3L_14499640_SNP [dm3] 3L_14506540_SNP [dm6]	G	A	2.104e^-8	2.472e^-4	INTRON bbg
3L	19984648	3L_19984648_SNP [dm3] 3L_19991548_SNP [dm6]	A	T	2.104e^-8	2.472e^-4	UPSTREAM CG7646 & 2 others DOWNSTREAM CR45161 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	19984649	3L_19984649_SNP [dm3] 3L_19991549_SNP [dm6]	C	T	2.104e^-8	2.472e^-4	UPSTREAM CG7646 & 2 others DOWNSTREAM CR45161 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3518734	3L_3518734_DEL [dm3] 3L_3518734_DEL [dm6]	TATGT	T	2.104e^-8	2.472e^-4	INTRON Eip63E
3L	6355589	3L_6355589_SNP [dm3] 3L_6362489_SNP [dm6]	A	T	2.104e^-8	2.472e^-4	INTERGENIC
3R	13434390	3R_13434390_SNP [dm3] 3R_17608668_SNP [dm6]	A	C	2.104e^-8	2.472e^-4	UPSTREAM CG14329 DOWNSTREAM sll INTERGENIC
3R	14088540	3R_14088540_SNP [dm3] 3R_18262818_SNP [dm6]	A	C	2.104e^-8	2.472e^-4	INTERGENIC
3R	15331393	3R_15331393_SNP [dm3] 3R_19505671_SNP [dm6]	A	G	2.104e^-8	2.472e^-4	INTRON Dys
3R	16877222	3R_16877222_SNP [dm3] 3R_21051500_SNP [dm6]	G	C	2.104e^-8	2.472e^-4	UTR_3_PRIME Mvl UPSTREAM CG17279 DOWNSTREAM Mvl
3R	8857838	3R_8857838_SNP [dm3] 3R_13032116_SNP [dm6]	T	C	2.104e^-8	2.472e^-4	UPSTREAM ry DOWNSTREAM l_3_87Df INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12342643	X_12342643_DEL [dm3] X_12448610_DEL [dm6]	CC	C	2.104e^-8	2.472e^-4	INTRON Pkcdelta
X	12352335	X_12352335_SNP [dm3] X_12458302_SNP [dm6]	T	G	2.104e^-8	2.472e^-4	UPSTREAM CG15731 INTERGENIC
X	14019036	X_14019036_DEL [dm3] X_14125003_DEL [dm6]	AAGT	A	2.104e^-8	2.472e^-4	INTERGENIC
X	21037612	X_21037612_SNP [dm3] X_21166585_SNP [dm6]	C	T	2.104e^-8	2.472e^-4	INTERGENIC
2L	17270508	2L_17270508_SNP [dm3] 2L_17270508_SNP [dm6]	T	A	2.577e^-8	2.808e^-4	INTERGENIC
2L	9540209	2L_9540209_SNP [dm3] 2L_9540209_SNP [dm6]	T	G	2.577e^-8	2.808e^-4	UPSTREAM CG17855 DOWNSTREAM Oatp30B INTERGENIC	TF binding site mE1_TFBS_bab1
2L	9540217	2L_9540217_SNP [dm3] 2L_9540217_SNP [dm6]	A	T	2.577e^-8	2.808e^-4	UPSTREAM CG17855 DOWNSTREAM Oatp30B INTERGENIC	TF binding site mE1_TFBS_bab1
2R	13814649	2R_13814649_DEL [dm3] 2R_17927144_DEL [dm6]	TTAAAATTTTACTATCTAAA...	T	2.577e^-8	2.808e^-4	DOWNSTREAM Elk INTERGENIC
3L	12638464	3L_12638464_SNP [dm3] 3L_12645364_SNP [dm6]	T	A	2.577e^-8	2.808e^-4	SPLICE_SITE_REGION CR32111 EXON CR32111
3L	15651491	3L_15651491_SNP [dm3] 3L_15658391_SNP [dm6]	C	G	2.577e^-8	2.808e^-4	DOWNSTREAM Eig71Eh & 1 other INTERGENIC
3R	11915723	3R_11915723_SNP [dm3] 3R_16090001_SNP [dm6]	A	T	2.577e^-8	2.808e^-4	INTRON Mhcl	TF binding site BDTNP1_TFBS_dl
3R	19676546	3R_19676546_SNP [dm3] 3R_23850824_SNP [dm6]	A	G	2.577e^-8	2.808e^-4	UTR_3_PRIME CG34355
3R	2509460	3R_2509460_DEL [dm3] 3R_6683738_DEL [dm6]	TAATATACA	T	2.577e^-8	2.808e^-4	UPSTREAM Edg84A INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9291231	3R_9291231_SNP [dm3] 3R_13465509_SNP [dm6]	G	A	2.577e^-8	2.808e^-4	DOWNSTREAM CR17025 INTRON CR17025	TF binding site BDTNP1_TFBS_dl
2L	18557727	2L_18557727_DEL [dm3] 2L_18557727_DEL [dm6]	CC	C	2.829e^-8	3.018e^-4	INTRON Pde11
3R	638419	3R_638419_SNP [dm3] 3R_4812697_SNP [dm6]	A	T	2.829e^-8	3.018e^-4	UPSTREAM Hus1-like & 2 others INTRON CG1129	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	638420	3R_638420_SNP [dm3] 3R_4812698_SNP [dm6]	G	T	2.829e^-8	3.018e^-4	UPSTREAM Hus1-like & 2 others INTRON CG1129	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	20375008	3R_20375008_SNP [dm3] 3R_24549286_SNP [dm6]	T	G	2.975e^-8	3.116e^-4	INTRON Esyt2	TF binding site BDTNP1_TFBS_z
2L	10222867	2L_10222867_SNP [dm3] 2L_10222867_SNP [dm6]	G	A	3.190e^-8	3.116e^-4	UTR_5_PRIME CG4908 DOWNSTREAM Prosalpha6 INTRON CG4908
2L	10222878	2L_10222878_SNP [dm3] 2L_10222878_SNP [dm6]	G	T	3.190e^-8	3.116e^-4	UTR_5_PRIME CG4908 DOWNSTREAM Prosalpha6 INTRON CG4908
2L	10581311	2L_10581311_SNP [dm3] 2L_10581311_SNP [dm6]	T	G	3.190e^-8	3.116e^-4	NON_SYNONYMOUS_CODING CG34161 DOWNSTREAM CG34160 INTRON Trim9
2L	6449520	2L_6449520_SNP [dm3] 2L_6449520_SNP [dm6]	T	C	3.190e^-8	3.116e^-4	UTR_3_PRIME retm
2L	7039	2L_7039_SNP [dm3] 2L_7039_SNP [dm6]	A	T	3.190e^-8	3.116e^-4	UPSTREAM CG11023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9247264	2L_9247264_SNP [dm3] 2L_9247264_SNP [dm6]	A	G	3.190e^-8	3.116e^-4	UTR_3_PRIME tai DOWNSTREAM tai
2R	6106562	2R_6106562_SNP [dm3] 2R_10219057_SNP [dm6]	T	C	3.190e^-8	3.116e^-4	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6106576	2R_6106576_SNP [dm3] 2R_10219071_SNP [dm6]	T	C	3.190e^-8	3.116e^-4	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6995846	2R_6995846_SNP [dm3] 2R_11108341_SNP [dm6]	T	G	3.190e^-8	3.116e^-4	INTRON luna
2R	7779137	2R_7779137_SNP [dm3] 2R_11891632_SNP [dm6]	G	T	3.190e^-8	3.116e^-4	UPSTREAM ERp60 & 1 other INTRON Ef1alpha48D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	14118905	3R_14118905_SNP [dm3] 3R_18293183_SNP [dm6]	T	C	3.190e^-8	3.116e^-4	UPSTREAM l_3_05822 INTRON l_3_05822	TF binding site BDTNP1_TFBS_twi
X	15904488	X_15904488_DEL [dm3] X_16010455_DEL [dm6]	TTTT	T	3.190e^-8	3.116e^-4	CODON_DELETION Muc14A
3L	9778536	3L_9778536_INS [dm3] 3L_9785436_INS [dm6]	A	AAAACTA	3.589e^-8	3.482e^-4	UTR_3_PRIME CG8177 DOWNSTREAM CG8177
2L	17124685	2L_17124685_SNP [dm3] 2L_17124685_SNP [dm6]	T	C	4.395e^-8	3.774e^-4	SYNONYMOUS_CODING CG31784
3L	19871638	3L_19871638_SNP [dm3] 3L_19878538_SNP [dm6]	T	C	4.512e^-8	3.774e^-4	INTRON CG8334	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	14375526	3R_14375526_SNP [dm3] 3R_18549804_SNP [dm6]	G	T	4.512e^-8	3.774e^-4	INTERGENIC
3R	20922743	3R_20922743_SNP [dm3] 3R_25097021_SNP [dm6]	C	A	4.512e^-8	3.774e^-4	UPSTREAM CG33095 & 1 other DOWNSTREAM fd96Cb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	20922753	3R_20922753_SNP [dm3] 3R_25097031_SNP [dm6]	G	A	4.512e^-8	3.774e^-4	UPSTREAM CG33095 & 1 other DOWNSTREAM fd96Cb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	21851772	3R_21851772_SNP [dm3] 3R_26026050_SNP [dm6]	T	A	4.512e^-8	3.774e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3R	7783048	3R_7783048_SNP [dm3] 3R_11957326_SNP [dm6]	T	G	4.512e^-8	3.774e^-4	UPSTREAM Hsp70Aa INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	7783093	3R_7783093_DEL [dm3] 3R_11957371_DEL [dm6]	ATGTA	C	4.512e^-8	3.774e^-4	UPSTREAM Hsp70Aa INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	7783102	3R_7783102_SNP [dm3] 3R_11957380_SNP [dm6]	T	C	4.512e^-8	3.774e^-4	UPSTREAM Hsp70Aa INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
4	318340	4_318340_SNP [dm3] 4_297714_SNP [dm6]	G	T	4.512e^-8	3.774e^-4	INTRON Syt7	transposable element FlyBase
4	318350	4_318350_SNP [dm3] 4_297724_SNP [dm6]	A	C	4.512e^-8	3.774e^-4	INTRON Syt7	transposable element FlyBase
3L	13292365	3L_13292365_SNP [dm3] 3L_13299265_SNP [dm6]	C	G	4.594e^-8	3.774e^-4	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	13574890	X_13574890_SNP [dm3] X_13680857_SNP [dm6]	G	A	4.594e^-8	3.774e^-4	UPSTREAM CG12177 INTERGENIC	TF binding site mE1_TFBS_HSA
X	13574912	X_13574912_SNP [dm3] X_13680879_SNP [dm6]	C	T	4.594e^-8	3.774e^-4	UPSTREAM CG12177 INTERGENIC	TF binding site mE1_TFBS_HSA
X	13574921	X_13574921_SNP [dm3] X_13680888_SNP [dm6]	G	A	4.594e^-8	3.774e^-4	UPSTREAM CG12177 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	10149993	2L_10149993_SNP [dm3] 2L_10149993_SNP [dm6]	A	T	4.620e^-8	3.774e^-4	INTRON CG44153 & 1 other
2L	10423244	2L_10423244_SNP [dm3] 2L_10423244_SNP [dm6]	C	A	4.620e^-8	3.774e^-4	UPSTREAM CG5168 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10995582	2L_10995582_SNP [dm3] 2L_10995582_SNP [dm6]	G	A	4.620e^-8	3.774e^-4	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
2L	11101426	2L_11101426_SNP [dm3] 2L_11101426_SNP [dm6]	A	C	4.620e^-8	3.774e^-4	UTR_3_PRIME Reps UPSTREAM Ge-1	TF binding site mE1_TFBS_HSA
2L	22135319	2L_22135319_SNP [dm3] 2L_22135319_SNP [dm6]	T	C	4.620e^-8	3.774e^-4	INTRON CG42748
2L	3971636	2L_3971636_SNP [dm3] 2L_3971636_SNP [dm6]	G	A	4.620e^-8	3.774e^-4	INTRON fred
2L	6130933	2L_6130933_SNP [dm3] 2L_6130933_SNP [dm6]	T	G	4.620e^-8	3.774e^-4	UPSTREAM CG9222 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6130951	2L_6130951_SNP [dm3] 2L_6130951_SNP [dm6]	C	T	4.620e^-8	3.774e^-4	UPSTREAM CG9222 & 2 others INTERGENIC
2L	6130955	2L_6130955_SNP [dm3] 2L_6130955_SNP [dm6]	T	C	4.620e^-8	3.774e^-4	UPSTREAM CG9222 & 2 others INTERGENIC
3L	16062597	3L_16062597_SNP [dm3] 3L_16069497_SNP [dm6]	A	G	4.620e^-8	3.774e^-4	INTRON Mbs
X	17909619	X_17909619_SNP [dm3] X_18015586_SNP [dm6]	C	T	4.620e^-8	3.774e^-4	UPSTREAM Sh INTRON Sh
3R	14201355	3R_14201355_SNP [dm3] 3R_18375633_SNP [dm6]	G	A	4.704e^-8	3.774e^-4	EXON CR44946
3R	14201361	3R_14201361_SNP [dm3] 3R_18375639_SNP [dm6]	G	A	4.704e^-8	3.774e^-4	EXON CR44946
3R	14201378	3R_14201378_INS [dm3] 3R_18375656_INS [dm6]	A	AGGTAA	4.704e^-8	3.774e^-4	EXON CR44946
2L	13557337	2L_13557337_SNP [dm3] 2L_13557337_SNP [dm6]	C	T	4.717e^-8	3.774e^-4	INTRON kuz
2L	19813713	2L_19813713_SNP [dm3] 2L_19813713_SNP [dm6]	A	G	4.717e^-8	3.774e^-4	UTR_3_PRIME CG13962 DOWNSTREAM CG13962 & 1 other INTRON sick
2L	19833167	2L_19833167_SNP [dm3] 2L_19833167_SNP [dm6]	T	C	4.717e^-8	3.774e^-4	INTRON sick
3L	2108087	3L_2108087_SNP [dm3] 3L_2108087_SNP [dm6]	T	C	4.717e^-8	3.774e^-4	INTRON sls	TF binding site mE1_TFBS_Trl
2R	20504428	2R_20504428_DEL [dm3] 2R_24616905_DEL [dm6]	TGTCAGCCT	T	4.912e^-8	3.845e^-4	INTRON CG13594
X	8534307	X_8534307_SNP [dm3] X_8640274_SNP [dm6]	T	A	4.912e^-8	3.845e^-4	INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2693163	3R_2693163_SNP [dm3] 3R_6867441_SNP [dm6]	G	A	4.934e^-8	3.845e^-4	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_Kr
X	12877886	X_12877886_SNP [dm3] X_12983853_SNP [dm6]	G	A	4.934e^-8	3.845e^-4	UPSTREAM CG32643 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18859881	X_18859881_SNP [dm3] X_18965848_SNP [dm6]	A	C	4.934e^-8	3.845e^-4	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
3R	11601281	3R_11601281_SNP [dm3] 3R_15775559_SNP [dm6]	G	A	5.526e^-8	4.219e^-4	UPSTREAM CR45206 & 1 other INTRON CG4525	TF binding site mE1_TFBS_inv
3R	16700412	3R_16700412_SNP [dm3] 3R_20874690_SNP [dm6]	A	G	5.526e^-8	4.219e^-4	DOWNSTREAM TotB INTERGENIC
3R	1746804	3R_1746804_SNP [dm3] 3R_5921082_SNP [dm6]	A	T	5.526e^-8	4.219e^-4	INTRON CG34113
3R	9905715	3R_9905715_SNP [dm3] 3R_14079993_SNP [dm6]	G	T	5.526e^-8	4.219e^-4	INTRON foxo
3R	27083670	3R_27083670_DEL [dm3] 3R_31257948_DEL [dm6]	GCCTCA	G	5.608e^-8	4.260e^-4	INTRON CG3669
2L	4734730	2L_4734730_SNP [dm3] 2L_4734730_SNP [dm6]	A	G	6.534e^-8	4.889e^-4	UTR_3_PRIME CG15630 UPSTREAM CG15631
3L	7385086	3L_7385086_SNP [dm3] 3L_7391986_SNP [dm6]	G	T	6.534e^-8	4.889e^-4	INTRON CG8563
X	7134749	X_7134749_SNP [dm3] X_7240716_SNP [dm6]	T	C	6.534e^-8	4.889e^-4	UTR_3_PRIME CG9650 INTRON CR44357
3L	1177653	3L_1177653_SNP [dm3] 3L_1177653_SNP [dm6]	A	G	6.947e^-8	5.122e^-4	UPSTREAM bab2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	12788701	3R_12788701_SNP [dm3] 3R_16962979_SNP [dm6]	T	G	6.947e^-8	5.122e^-4	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25851136	3R_25851136_SNP [dm3] 3R_30025414_SNP [dm6]	T	C	6.947e^-8	5.122e^-4	INTRON Axn
2L	18945288	2L_18945288_SNP [dm3] 2L_18945288_SNP [dm6]	A	G	8.002e^-8	5.787e^-4	UPSTREAM CR44740 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8668640	2L_8668640_SNP [dm3] 2L_8668640_SNP [dm6]	T	C	8.002e^-8	5.787e^-4	UTR_3_PRIME Sema-1a DOWNSTREAM Sema-1a
3R	15663141	3R_15663141_SNP [dm3] 3R_19837419_SNP [dm6]	G	T	8.002e^-8	5.787e^-4	UPSTREAM bnl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	27761294	3R_27761294_SNP [dm3] 3R_31935572_SNP [dm6]	C	T	8.002e^-8	5.787e^-4	UPSTREAM heph INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16466576	X_16466576_SNP [dm3] X_16572543_SNP [dm6]	G	T	9.240e^-8	6.650e^-4	INTRON CanA-14F
2L	6115377	2L_6115377_SNP [dm3] 2L_6115377_SNP [dm6]	T	A	1.240e^-7	8.516e^-4	INTRON stai	TF binding site BDTNP1_TFBS_dl
2L	6308862	2L_6308862_SNP [dm3] 2L_6308862_SNP [dm6]	A	G	1.240e^-7	8.516e^-4	UTR_5_PRIME CG13984 UPSTREAM CG43922 INTRON Ddr	TF binding site mE1_TFBS_cad
2L	6941515	2L_6941515_SNP [dm3] 2L_6941515_SNP [dm6]	C	A	1.240e^-7	8.516e^-4	INTRON CG18304	TF binding site BDTNP1_TFBS_dl
2L	9125395	2L_9125395_SNP [dm3] 2L_9125395_SNP [dm6]	C	G	1.240e^-7	8.516e^-4	UPSTREAM CG32982 DOWNSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	8558054	2R_8558054_INS [dm3] 2R_12670549_INS [dm6]	T	TAA	1.240e^-7	8.516e^-4	UTR_3_PRIME CG42708 UPSTREAM nemy DOWNSTREAM CG42708	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2R	8558062	2R_8558062_SNP [dm3] 2R_12670557_SNP [dm6]	T	G	1.240e^-7	8.516e^-4	UTR_3_PRIME CG42708 UPSTREAM nemy DOWNSTREAM CG42708	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3L	11207293	3L_11207293_SNP [dm3] 3L_11214193_SNP [dm6]	C	T	1.240e^-7	8.516e^-4	UPSTREAM CG42671 DOWNSTREAM CG7600 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15943586	3L_15943586_SNP [dm3] 3L_15950486_SNP [dm6]	A	C	1.240e^-7	8.516e^-4	INTRON Pka-C3
3L	17051875	3L_17051875_SNP [dm3] 3L_17058775_SNP [dm6]	G	T	1.240e^-7	8.516e^-4	UTR_3_PRIME Rbp6 DOWNSTREAM Rbp6 & 1 other
X	14730112	X_14730112_INS [dm3] X_14836079_INS [dm6]	A	ACATTGACTAA...	1.240e^-7	8.516e^-4	UTR_3_PRIME CG14411 UPSTREAM CG14410 DOWNSTREAM CG14411	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	8127307	2R_8127307_SNP [dm3] 2R_12239802_SNP [dm6]	T	G	1.519e^-7	0.001	UPSTREAM CG13170 INTERGENIC
2L	12110816	2L_12110816_SNP [dm3] 2L_12110816_SNP [dm6]	T	C	1.754e^-7	0.001	UPSTREAM Phae2 DOWNSTREAM Phae1 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	13275342	2L_13275342_SNP [dm3] 2L_13275342_SNP [dm6]	T	C	1.754e^-7	0.001	INTRON CG44085	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	14972702	2L_14972702_SNP [dm3] 2L_14972702_SNP [dm6]	T	A	1.754e^-7	0.001	UPSTREAM CG42313 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	14972724	2L_14972724_SNP [dm3] 2L_14972724_SNP [dm6]	T	A	1.754e^-7	0.001	UPSTREAM CG42313 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	17405212	2L_17405212_SNP [dm3] 2L_17405212_SNP [dm6]	T	A	1.754e^-7	0.001	DOWNSTREAM CLIP-190 INTRON CLIP-190
2L	17405214	2L_17405214_SNP [dm3] 2L_17405214_SNP [dm6]	A	C	1.754e^-7	0.001	DOWNSTREAM CLIP-190 INTRON CLIP-190
2L	3736965	2L_3736965_SNP [dm3] 2L_3736965_SNP [dm6]	G	C	1.754e^-7	0.001	INTRON CG10019
2L	3736966	2L_3736966_SNP [dm3] 2L_3736966_SNP [dm6]	G	C	1.754e^-7	0.001	INTRON CG10019
2L	6130929	2L_6130929_SNP [dm3] 2L_6130929_SNP [dm6]	G	T	1.754e^-7	0.001	UPSTREAM CG9222 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10771732	2R_10771732_DEL [dm3] 2R_14884227_DEL [dm6]	TTA	T	1.754e^-7	0.001	DOWNSTREAM Cyp6a20 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	12755534	2R_12755534_SNP [dm3] 2R_16868029_SNP [dm6]	G	T	1.754e^-7	0.001	UPSTREAM Ef1beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7073851	2R_7073851_SNP [dm3] 2R_11186346_SNP [dm6]	C	T	1.754e^-7	0.001	INTRON shn	TF binding site mE1_TFBS_Trl
3L	15606182	3L_15606182_SNP [dm3] 3L_15613082_SNP [dm6]	T	G	1.754e^-7	0.001	UPSTREAM CG13449 DOWNSTREAM comm3 INTERGENIC
3R	12480770	3R_12480770_SNP [dm3] 3R_16655048_SNP [dm6]	G	T	1.754e^-7	0.001	INTRON modSP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	14137304	X_14137304_SNP [dm3] X_14243271_SNP [dm6]	G	A	1.754e^-7	0.001	UPSTREAM CG32599 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9976911	X_9976911_SNP [dm3] X_10082878_SNP [dm6]	G	A	1.754e^-7	0.001	UPSTREAM CG2972 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	4046269	2L_4046269_SNP [dm3] 2L_4046269_SNP [dm6]	A	G	1.961e^-7	0.001	INTRON ed	TF binding site mE1_TFBS_HSA
2R	6816508	2R_6816508_SNP [dm3] 2R_10929003_SNP [dm6]	G	A	1.961e^-7	0.001	INTERGENIC
2L	11182373	2L_11182373_SNP [dm3] 2L_11182373_SNP [dm6]	A	T	2.148e^-7	0.001	INTRON Ca-beta
3L	8573333	3L_8573333_SNP [dm3] 3L_8580233_SNP [dm6]	T	G	2.148e^-7	0.001	INTRON CG43078
2R	11598116	2R_11598116_SNP [dm3] 2R_15710611_SNP [dm6]	A	G	2.480e^-7	0.002	DOWNSTREAM CG30083 INTERGENIC
2R	11598130	2R_11598130_SNP [dm3] 2R_15710625_SNP [dm6]	T	A	2.480e^-7	0.002	DOWNSTREAM CG30083 INTERGENIC
3R	13560424	3R_13560424_DEL [dm3] 3R_17734702_DEL [dm6]	TATATAT	G	2.480e^-7	0.002	DOWNSTREAM CG14321 INTERGENIC
3R	20384868	3R_20384868_SNP [dm3] 3R_24559146_SNP [dm6]	C	T	2.480e^-7	0.002	UTR_3_PRIME CG13624 DOWNSTREAM CG13624
3L	16868705	3L_16868705_SNP [dm3] 3L_16875605_SNP [dm6]	A	G	9.037e^-5	0.218	INTRON Lmpt	TF binding site mE1_TFBS_cnc
3L	18408083	3L_18408083_SNP [dm3] 3L_18414983_SNP [dm6]	A	C	9.037e^-5	0.218	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	10470415	X_10470415_SNP [dm3] X_10576382_SNP [dm6]	T	G	9.037e^-5	0.218	INTRON spri
X	16254944	X_16254944_SNP [dm3] X_16360911_SNP [dm6]	A	G	9.037e^-5	0.218	UPSTREAM nonA INTRON Gpi1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
X	4806604	X_4806604_SNP [dm3] X_4912571_SNP [dm6]	T	C	9.037e^-5	0.218	INTRON CG32772	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	21054481	2R_21054481_SNP [dm3] 2R_25166958_SNP [dm6]	C	T	2.920e^-4	0.218	UPSTREAM CG34038 INTERGENIC
2L	10265144	2L_10265144_SNP [dm3] 2L_10265144_SNP [dm6]	T	A	3.477e^-4	0.218	UTR_3_PRIME CG18619 UPSTREAM Mob3 DOWNSTREAM CG18619	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10265150	2L_10265150_SNP [dm3] 2L_10265150_SNP [dm6]	G	A	3.477e^-4	0.218	UTR_3_PRIME CG18619 UPSTREAM Mob3 DOWNSTREAM CG18619	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21006056	3L_21006056_SNP [dm3] 3L_21012956_SNP [dm6]	A	C	3.477e^-4	0.218	INTRON skd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	10470425	X_10470425_SNP [dm3] X_10576392_SNP [dm6]	T	G	3.477e^-4	0.218	INTRON spri
X	11235325	X_11235325_SNP [dm3] X_11341292_SNP [dm6]	A	C	3.477e^-4	0.218	INTRON CG34348	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	10719838	2R_10719838_DEL [dm3] 2R_14832333_DEL [dm6]	AA	A	3.798e^-4	0.218	UPSTREAM CG10205 INTERGENIC
3L	14269286	3L_14269286_INS [dm3] 3L_14276186_INS [dm6]	A	AA	3.798e^-4	0.218	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10047340	3R_10047340_SNP [dm3] 3R_14221618_SNP [dm6]	C	G	3.798e^-4	0.218	UPSTREAM CG33109 DOWNSTREAM Sp212 INTERGENIC
3R	10503289	3R_10503289_SNP [dm3] 3R_14677567_SNP [dm6]	C	T	3.798e^-4	0.218	INTRON Meltrin
3R	19008446	3R_19008446_SNP [dm3] 3R_23182724_SNP [dm6]	A	C	3.798e^-4	0.218	UPSTREAM Irk1 INTRON Irk1
3R	19595934	3R_19595934_SNP [dm3] 3R_23770212_SNP [dm6]	G	A	3.798e^-4	0.218	SYNONYMOUS_CODING tst
3R	21230018	3R_21230018_SNP [dm3] 3R_25404296_SNP [dm6]	A	G	3.798e^-4	0.218	INTRON Fur1
3R	3788119	3R_3788119_SNP [dm3] 3R_7962397_SNP [dm6]	A	C	3.798e^-4	0.218	UTR_5_PRIME dsx INTRON dsx	TF binding site BDTNP1_TFBS_dl
2L	1962614	2L_1962614_SNP [dm3] 2L_1962614_SNP [dm6]	T	C	5.733e^-4	0.218	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20966076	2L_20966076_SNP [dm3] 2L_20966076_SNP [dm6]	G	T	5.733e^-4	0.218	UTR_3_PRIME CG42238	TF binding site BDTNP1_TFBS_twi
2L	8973563	2L_8973563_SNP [dm3] 2L_8973563_SNP [dm6]	A	C	5.733e^-4	0.218	INTRON CG9541
2R	6824602	2R_6824602_SNP [dm3] 2R_10937097_SNP [dm6]	C	T	5.733e^-4	0.218	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13897693	3L_13897693_SNP [dm3] 3L_13904593_SNP [dm6]	G	C	5.733e^-4	0.218	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10790580	3R_10790580_SNP [dm3] 3R_14964858_SNP [dm6]	A	T	5.733e^-4	0.218	INTERGENIC
3R	17013967	3R_17013967_SNP [dm3] 3R_21188245_SNP [dm6]	A	T	5.733e^-4	0.218	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	25512899	3R_25512899_SNP [dm3] 3R_29687177_SNP [dm6]	C	G	5.733e^-4	0.218	UPSTREAM Obp99c INTRON Obp99c
3R	26036213	3R_26036213_SNP [dm3] 3R_30210491_SNP [dm6]	A	T	5.733e^-4	0.218	UPSTREAM CecA1 DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
3R	26332057	3R_26332057_SNP [dm3] 3R_30506335_SNP [dm6]	G	C	5.733e^-4	0.218	NON_SYNONYMOUS_CODING CG15539 UTR_5_PRIME CG15539 UPSTREAM PH4alphaSG1 & 1 other
X	18730420	X_18730420_DEL [dm3] X_18836387_DEL [dm6]	ATGCA	A	5.733e^-4	0.218	INTRON Pvf1
X	18875935	X_18875935_DEL [dm3] X_18981902_DEL [dm6]	TATGT	T	5.733e^-4	0.218	INTRON CG43759
2L	16133365	2L_16133365_SNP [dm3] 2L_16133365_SNP [dm6]	G	T	7.357e^-4	0.218	UPSTREAM CG4892 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6612240	2L_6612240_SNP [dm3] 2L_6612240_SNP [dm6]	T	A	7.357e^-4	0.218	INTRON CG11050	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8289130	2L_8289130_INS [dm3] 2L_8289130_INS [dm6]	C	AT	7.357e^-4	0.218	INTRON Btk29A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	13719476	2R_13719476_SNP [dm3] 2R_17831971_SNP [dm6]	T	G	7.357e^-4	0.218	INTRON grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11207430	3L_11207430_SNP [dm3] 3L_11214330_SNP [dm6]	T	C	7.357e^-4	0.218	UPSTREAM CG42671 DOWNSTREAM CG7600 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4639245	3L_4639245_SNP [dm3] 3L_4639245_SNP [dm6]	T	C	7.357e^-4	0.218	INTRON axo
3R	11751660	3R_11751660_SNP [dm3] 3R_15925938_SNP [dm6]	A	G	7.357e^-4	0.218	START_GAINED CG34276 UTR_5_PRIME CG34276 UPSTREAM CG34276 INTRON CG4221
3R	14172563	3R_14172563_SNP [dm3] 3R_18346841_SNP [dm6]	C	T	7.357e^-4	0.218	INTRON CG15803
3R	17799484	3R_17799484_SNP [dm3] 3R_21973762_SNP [dm6]	A	G	7.357e^-4	0.218	INTRON Eip93F
3R	19775799	3R_19775799_SNP [dm3] 3R_23950077_SNP [dm6]	T	C	7.357e^-4	0.218	INTERGENIC
3R	20238726	3R_20238726_SNP [dm3] 3R_24413004_SNP [dm6]	G	C	7.357e^-4	0.218	INTRON nAChRalpha1
3R	20238730	3R_20238730_SNP [dm3] 3R_24413008_SNP [dm6]	C	T	7.357e^-4	0.218	INTRON nAChRalpha1
3R	20238731	3R_20238731_SNP [dm3] 3R_24413009_SNP [dm6]	C	T	7.357e^-4	0.218	INTRON nAChRalpha1
3R	21293081	3R_21293081_SNP [dm3] 3R_25467359_SNP [dm6]	A	T	7.357e^-4	0.218	INTRON Fur1	TF binding site BDTNP1_TFBS_dl
3R	21524866	3R_21524866_SNP [dm3] 3R_25699144_SNP [dm6]	T	G	7.357e^-4	0.218	UTR_3_PRIME LpR2 DOWNSTREAM LpR2
3R	22079993	3R_22079993_SNP [dm3] 3R_26254271_SNP [dm6]	A	G	7.357e^-4	0.218	UTR_3_PRIME Ald DOWNSTREAM Ald	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
3R	22079994	3R_22079994_SNP [dm3] 3R_26254272_SNP [dm6]	C	T	7.357e^-4	0.218	UTR_3_PRIME Ald DOWNSTREAM Ald	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
4	339189	4_339189_INS [dm3] 4_318563_INS [dm6]	A	AA	7.357e^-4	0.218	INTRON CG32850	transposable element FlyBase
4	870101	4_870101_SNP [dm3] 4_849475_SNP [dm6]	G	A	7.357e^-4	0.218	INTERGENIC
X	11779950	X_11779950_SNP [dm3] X_11885917_SNP [dm6]	T	A	7.357e^-4	0.218	UPSTREAM CG10353 INTRON CG10353

By genomic position
Variant impact
Gene name

cg42404P phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results