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cg42404C phenotype
GWAS results were precomputed for all phenotypes using
PLINK2
[v2.00a3LM (1 Jul 2021)] and corrected for the 6 main covariates defined in
Huang et al., 2014
. These covariates are the same than the ones used in the
DGRP2
website.
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Variant impact
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HIGH
MODERATE
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MODIFIER
Gene name
Involved in binding site
Binding site
Any binding site
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Unclassified sex
0
GWAS results were computed on dm3 genome.
If you want to make an independent analysis with
DGRP2
or
PLINK2
, you can find here prepared input files for this phenotype:
DGRP2 results
PLINK2 results
Full results
Phenotype distribution and association to known covariates
Shapiro-Wilk test of normality
(p-value=7.753e
-1
)
Null hypothesis is not rejected (p>0.05).
Interpretation:
NORMAL
distribution of this phenotype
We tested for association of this phenotype with 6 known covariates
Huang et al., 2014
using both ANOVA and Kruskal-Wallis association tests.
ANOVA test
No significant result.
Kruskal-Wallis test
Covariate
χ
2
p-value
Significance
In_2L_t
4.6436
0.0981
PNG
PDF
QQplot
PNG
PDF
Manhattan plot
GWAS results