DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.996e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2047 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	23663574	3R_23663574_SNP [dm3] 3R_27837852_SNP [dm6]	C	T	2.802e^-6	0.888	INTRON CG34353
2R	20321436	2R_20321436_SNP [dm3] 2R_24433913_SNP [dm6]	C	A	3.522e^-6	0.888	INTERGENIC
3R	3022243	3R_3022243_SNP [dm3] 3R_7196521_SNP [dm6]	T	C	3.700e^-6	0.888	INTRON lap
2R	13081927	2R_13081927_SNP [dm3] 2R_17194422_SNP [dm6]	T	C	4.240e^-6	0.888	UPSTREAM CG10950 INTERGENIC
3L	5273161	3L_5273161_SNP [dm3] 3L_5280061_SNP [dm6]	G	A	5.238e^-6	0.888	INTERGENIC
3L	5273132	3L_5273132_DEL [dm3] 3L_5280032_DEL [dm6]	TGCC	CTT	6.599e^-6	0.888	INTERGENIC
3L	1234139	3L_1234139_SNP [dm3] 3L_1234139_SNP [dm6]	C	T	7.304e^-6	0.888	UTR_5_PRIME CG33966 DOWNSTREAM CG33965
X	4863995	X_4863995_SNP [dm3] X_4969962_SNP [dm6]	A	C	7.672e^-6	0.888	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	4762956	X_4762956_SNP [dm3] X_4868923_SNP [dm6]	A	C	8.938e^-6	0.888	INTRON CG42594
3L	2219101	3L_2219101_SNP [dm3] 3L_2219101_SNP [dm6]	G	A	9.788e^-6	0.888	INTERGENIC
3R	26037678	3R_26037678_SNP [dm3] 3R_30211956_SNP [dm6]	T	A	1.009e^-5	0.888	UPSTREAM CecA2 & 1 other DOWNSTREAM CecA1 & 1 other INTERGENIC
X	9462758	X_9462758_SNP [dm3] X_9568725_SNP [dm6]	C	T	1.097e^-5	0.888	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14884001	3R_14884001_SNP [dm3] 3R_19058279_SNP [dm6]	T	A	1.150e^-5	0.888	INTRON cdi	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	9421083	X_9421083_SNP [dm3] X_9527050_SNP [dm6]	G	A	1.153e^-5	0.888	INTRON CG32700
3L	12750782	3L_12750782_SNP [dm3] 3L_12757682_SNP [dm6]	T	G	1.155e^-5	0.888	SYNONYMOUS_CODING CG32113
3R	21087888	3R_21087888_SNP [dm3] 3R_25262166_SNP [dm6]	A	C	1.392e^-5	0.888	UPSTREAM CG11858 INTRON CG10425	TF binding site mE1_TFBS_sens
3L	4349773	3L_4349773_INS [dm3] 3L_4349773_INS [dm6]	T	TT	1.407e^-5	0.888	INTRON Cip4
3L	12751782	3L_12751782_SNP [dm3] 3L_12758682_SNP [dm6]	C	A	1.542e^-5	0.888	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_inv
3R	969947	3R_969947_SNP [dm3] 3R_5144225_SNP [dm6]	T	C	1.584e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8761961	3L_8761961_SNP [dm3] 3L_8768861_SNP [dm6]	T	C	1.661e^-5	0.888	INTRON Fhos
2L	18475359	2L_18475359_SNP [dm3] 2L_18475359_SNP [dm6]	T	G	1.693e^-5	0.888	NON_SYNONYMOUS_CODING CG10283	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	12330220	2L_12330220_SNP [dm3] 2L_12330220_SNP [dm6]	C	T	1.702e^-5	0.888	INTERGENIC
3L	7450279	3L_7450279_SNP [dm3] 3L_7457179_SNP [dm6]	G	C	1.777e^-5	0.888	SYNONYMOUS_CODING ppk26
3R	17491965	3R_17491965_SNP [dm3] 3R_21666243_SNP [dm6]	A	C	1.799e^-5	0.888	DOWNSTREAM DNApol-alpha180 INTRON CG15497	TF binding site BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22143785	3R_22143785_SNP [dm3] 3R_26318063_SNP [dm6]	G	A	1.842e^-5	0.888	UPSTREAM CG33970 INTERGENIC
X	10329667	X_10329667_SNP [dm3] X_10435634_SNP [dm6]	G	C	1.868e^-5	0.888	INTRON CG32683
3R	26047464	3R_26047464_SNP [dm3] 3R_30221742_SNP [dm6]	A	G	2.204e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	12772228	X_12772228_SNP [dm3] X_12878195_SNP [dm6]	T	C	2.234e^-5	0.888	INTRON Pde9
3L	4387877	3L_4387877_SNP [dm3] 3L_4387877_SNP [dm6]	A	T	2.239e^-5	0.888	INTRON slow
X	4998044	X_4998044_SNP [dm3] X_5104011_SNP [dm6]	T	G	2.254e^-5	0.888	INTRON rg & 1 other
3R	19925178	3R_19925178_SNP [dm3] 3R_24099456_SNP [dm6]	C	A	2.318e^-5	0.888	INTRON 4EHP
3L	8816893	3L_8816893_INS [dm3] 3L_8823793_INS [dm6]	A	AA	2.381e^-5	0.888	INTERGENIC	TF binding site mE1_TFBS_cad
X	19000975	X_19000975_INS [dm3] X_19106942_INS [dm6]	A	ACAA	2.452e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4375086	X_4375086_SNP [dm3] X_4481053_SNP [dm6]	T	C	2.455e^-5	0.888	INTRON CR32773 & 1 other
3L	7093952	3L_7093952_SNP [dm3] 3L_7100852_SNP [dm6]	C	T	2.526e^-5	0.888	INTRON form3
3L	7094193	3L_7094193_SNP [dm3] 3L_7101093_SNP [dm6]	A	C	2.526e^-5	0.888	INTRON form3
3L	961004	3L_961004_SNP [dm3] 3L_961004_SNP [dm6]	G	C	2.535e^-5	0.888	INTRON Glut1
2R	12127762	2R_12127762_SNP [dm3] 2R_16240257_SNP [dm6]	C	A	2.565e^-5	0.888	NON_SYNONYMOUS_CODING krimp DOWNSTREAM CG15708	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18980078	3R_18980078_SNP [dm3] 3R_23154356_SNP [dm6]	A	G	2.635e^-5	0.888	SYNONYMOUS_CODING unk	TF binding site mE1_TFBS_sens
X	8749872	X_8749872_SNP [dm3] X_8855839_SNP [dm6]	T	A	2.652e^-5	0.888	INTRON CG12075
3R	22143770	3R_22143770_SNP [dm3] 3R_26318048_SNP [dm6]	G	A	2.669e^-5	0.888	UPSTREAM CG33970 INTERGENIC
2L	4815917	2L_4815917_SNP [dm3] 2L_4815917_SNP [dm6]	C	T	2.680e^-5	0.888	SPLICE_SITE_REGION CG3225 UTR_3_PRIME CG3225 DOWNSTREAM CG15629
X	8359031	X_8359031_SNP [dm3] X_8464998_SNP [dm6]	A	G	2.772e^-5	0.888	UPSTREAM Sptr DOWNSTREAM CG33223 INTERGENIC
3R	5121647	3R_5121647_DEL [dm3] 3R_9295925_DEL [dm6]	GAATGTTTATGG...	G	2.798e^-5	0.888	INTRON CG8861
3L	14548660	3L_14548660_SNP [dm3] 3L_14555560_SNP [dm6]	C	T	2.807e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2R	5513131	2R_5513131_SNP [dm3] 2R_9625626_SNP [dm6]	G	T	2.833e^-5	0.888	INTRON Mmp2
3L	14176905	3L_14176905_INS [dm3] 3L_14183805_INS [dm6]	C	CTAC	2.878e^-5	0.888	INTERGENIC	TF binding site mE1_TFBS_cad
3R	8863894	3R_8863894_SNP [dm3] 3R_13038172_SNP [dm6]	G	T	2.936e^-5	0.888	UPSTREAM CG11668 DOWNSTREAM ry INTERGENIC
3L	12751574	3L_12751574_SNP [dm3] 3L_12758474_SNP [dm6]	A	C	2.948e^-5	0.888	INTRON CG32113	TF binding site mE1_TFBS_inv
3R	15629738	3R_15629738_SNP [dm3] 3R_19804016_SNP [dm6]	G	A	3.083e^-5	0.888	INTRON bnl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18923927	2R_18923927_SNP [dm3] 2R_23036404_SNP [dm6]	A	T	3.145e^-5	0.888	INTRON twi & 1 other	TF binding site mE1_TFBS_inv
3R	7933106	3R_7933106_SNP [dm3] 3R_12107384_SNP [dm6]	C	T	3.255e^-5	0.888	NON_SYNONYMOUS_CODING dpr17	TF binding site BDTNP1_TFBS_sna
2L	19616845	2L_19616845_SNP [dm3] 2L_19616845_SNP [dm6]	T	G	3.455e^-5	0.888	INTRON Lar
X	12772229	X_12772229_SNP [dm3] X_12878196_SNP [dm6]	G	A	3.503e^-5	0.888	INTRON Pde9
X	5185806	X_5185806_SNP [dm3] X_5291773_SNP [dm6]	G	T	3.568e^-5	0.888	INTERGENIC
3R	15684720	3R_15684720_SNP [dm3] 3R_19858998_SNP [dm6]	G	A	3.637e^-5	0.888	INTRON Ire1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19000910	X_19000910_DEL [dm3] X_19106877_DEL [dm6]	CGAACGAGAGAGATGTGTTT...	C	3.647e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15629744	3R_15629744_SNP [dm3] 3R_19804022_SNP [dm6]	C	G	3.689e^-5	0.888	INTRON bnl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10329663	X_10329663_SNP [dm3] X_10435630_SNP [dm6]	A	G	3.774e^-5	0.888	INTRON CG32683
X	17758219	X_17758219_SNP [dm3] X_17864186_SNP [dm6]	C	G	3.788e^-5	0.888	NON_SYNONYMOUS_CODING mnb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7553535	X_7553535_SNP [dm3] X_7659502_SNP [dm6]	A	T	3.835e^-5	0.888	INTRON ct	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22415571	3R_22415571_SNP [dm3] 3R_26589849_SNP [dm6]	T	C	3.850e^-5	0.888	INTRON scrib
2R	13882739	2R_13882739_SNP [dm3] 2R_17995234_SNP [dm6]	G	C	3.918e^-5	0.888	INTRON dpr13
3L	18368375	3L_18368375_SNP [dm3] 3L_18375275_SNP [dm6]	G	T	3.978e^-5	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12330222	2L_12330222_SNP [dm3] 2L_12330222_SNP [dm6]	G	T	4.028e^-5	0.888	INTERGENIC
3R	2506572	3R_2506572_DEL [dm3] 3R_6680850_DEL [dm6]	CAG	C	4.036e^-5	0.888	INTERGENIC	regulatory region FlyBase REDfly_CRMs transposable element FlyBase
3R	19925179	3R_19925179_SNP [dm3] 3R_24099457_SNP [dm6]	C	T	4.099e^-5	0.888	INTRON 4EHP
X	7553517	X_7553517_SNP [dm3] X_7659484_SNP [dm6]	T	A	4.184e^-5	0.888	INTRON ct	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7092878	3L_7092878_SNP [dm3] 3L_7099778_SNP [dm6]	T	A	4.187e^-5	0.888	INTRON form3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12722117	X_12722117_SNP [dm3] X_12828084_SNP [dm6]	A	G	4.266e^-5	0.888	INTRON Pde9
3L	12752187	3L_12752187_SNP [dm3] 3L_12759087_SNP [dm6]	A	C	4.267e^-5	0.888	INTRON CG32113
2L	16537741	2L_16537741_SNP [dm3] 2L_16537741_SNP [dm6]	A	T	4.302e^-5	0.888	INTERGENIC
2R	17869427	2R_17869427_SNP [dm3] 2R_21981922_SNP [dm6]	A	G	4.304e^-5	0.888	DOWNSTREAM Gr58a INTERGENIC
3R	970259	3R_970259_SNP [dm3] 3R_5144537_SNP [dm6]	A	T	4.324e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	970357	3R_970357_DEL [dm3] 3R_5144635_DEL [dm6]	CCTATTTGTCCTGC...	C	4.417e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4999440	X_4999440_SNP [dm3] X_5105407_SNP [dm6]	T	G	4.528e^-5	0.888	INTRON rg & 1 other
3L	4076380	3L_4076380_SNP [dm3] 3L_4076380_SNP [dm6]	T	A	4.624e^-5	0.888	INTRON Gad1
3L	7518431	3L_7518431_SNP [dm3] 3L_7525331_SNP [dm6]	G	A	4.637e^-5	0.888	NON_SYNONYMOUS_CODING ltl
2L	19939831	2L_19939831_SNP [dm3] 2L_19939831_SNP [dm6]	G	C	4.668e^-5	0.888	INTRON sick	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3R	22143658	3R_22143658_SNP [dm3] 3R_26317936_SNP [dm6]	T	A	4.755e^-5	0.888	UPSTREAM CG33970 INTERGENIC
3L	5329534	3L_5329534_INS [dm3] 3L_5336434_INS [dm6]	A	AA	4.759e^-5	0.888	INTERGENIC
3R	21088098	3R_21088098_SNP [dm3] 3R_25262376_SNP [dm6]	A	G	4.765e^-5	0.888	NON_SYNONYMOUS_CODING CG10425 UPSTREAM CG11858 DOWNSTREAM Aats-gln
2L	4493017	2L_4493017_SNP [dm3] 2L_4493017_SNP [dm6]	T	G	4.885e^-5	0.888	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_sens
2L	4493167	2L_4493167_SNP [dm3] 2L_4493167_SNP [dm6]	T	A	4.885e^-5	0.888	SYNONYMOUS_CODING dp INTRON dp
X	4375089	X_4375089_SNP [dm3] X_4481056_SNP [dm6]	A	C	4.907e^-5	0.888	INTRON CR32773 & 1 other
3L	7450372	3L_7450372_SNP [dm3] 3L_7457272_SNP [dm6]	T	C	4.934e^-5	0.888	SYNONYMOUS_CODING ppk26
3R	11239224	3R_11239224_SNP [dm3] 3R_15413502_SNP [dm6]	A	G	5.032e^-5	0.888	NON_SYNONYMOUS_CODING Atx2	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	13441615	X_13441615_SNP [dm3] X_13547582_SNP [dm6]	C	A	5.068e^-5	0.888	INTERGENIC
3L	18368273	3L_18368273_SNP [dm3] 3L_18375173_SNP [dm6]	G	T	5.076e^-5	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA
X	2685439	X_2685439_SNP [dm3] X_2791406_SNP [dm6]	T	A	5.206e^-5	0.888	SPLICE_SITE_REGION w UPSTREAM CG32795 INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6805087	X_6805087_SNP [dm3] X_6911054_SNP [dm6]	A	T	5.528e^-5	0.888	INTRON CG14431
3R	15618069	3R_15618069_SNP [dm3] 3R_19792347_SNP [dm6]	T	G	5.531e^-5	0.888	INTERGENIC
3L	667983	3L_667983_SNP [dm3] 3L_667983_SNP [dm6]	C	T	5.538e^-5	0.888	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12049367	3L_12049367_SNP [dm3] 3L_12056267_SNP [dm6]	A	G	5.543e^-5	0.888	UTR_5_PRIME rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	974858	3R_974858_SNP [dm3] 3R_5149136_SNP [dm6]	A	T	5.562e^-5	0.888	INTERGENIC
X	19000866	X_19000866_SNP [dm3] X_19106833_SNP [dm6]	G	A	5.653e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5333197	3L_5333197_SNP [dm3] 3L_5340097_SNP [dm6]	G	A	5.706e^-5	0.888	INTERGENIC
X	9462862	X_9462862_SNP [dm3] X_9568829_SNP [dm6]	C	G	5.757e^-5	0.888	NON_SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4762934	X_4762934_SNP [dm3] X_4868901_SNP [dm6]	A	T	5.758e^-5	0.888	INTRON CG42594
3R	980363	3R_980363_SNP [dm3] 3R_5154641_SNP [dm6]	C	T	5.769e^-5	0.888	INTRON dpr16
2R	7318908	2R_7318908_SNP [dm3] 2R_11431403_SNP [dm6]	T	G	5.781e^-5	0.888	INTERGENIC
3R	22415565	3R_22415565_SNP [dm3] 3R_26589843_SNP [dm6]	G	A	5.788e^-5	0.888	INTRON scrib
3R	21088056	3R_21088056_SNP [dm3] 3R_25262334_SNP [dm6]	C	G	5.898e^-5	0.888	NON_SYNONYMOUS_CODING CG10425 UPSTREAM CG11858 DOWNSTREAM Aats-gln
2L	6289855	2L_6289855_SNP [dm3] 2L_6289855_SNP [dm6]	T	C	6.032e^-5	0.888	SYNONYMOUS_CODING Ddr
3L	22484286	3L_22484286_SNP [dm3] 3L_22491186_SNP [dm6]	G	T	6.103e^-5	0.888	INTERGENIC
3L	12042643	3L_12042643_SNP [dm3] 3L_12049543_SNP [dm6]	T	A	6.152e^-5	0.888	INTRON rols
3R	4426287	3R_4426287_SNP [dm3] 3R_8600565_SNP [dm6]	A	T	6.211e^-5	0.888	INTRON 5-HT2B
3R	965674	3R_965674_SNP [dm3] 3R_5139952_SNP [dm6]	C	T	6.268e^-5	0.888	UPSTREAM CG12589 INTERGENIC
3R	19692433	3R_19692433_SNP [dm3] 3R_23866711_SNP [dm6]	C	T	6.334e^-5	0.888	INTRON Pli
3R	21087882	3R_21087882_SNP [dm3] 3R_25262160_SNP [dm6]	T	C	6.433e^-5	0.888	UPSTREAM CG11858 INTRON CG10425	TF binding site mE1_TFBS_sens
2R	8493295	2R_8493295_DEL [dm3] 2R_12605790_DEL [dm6]	CC	C	6.470e^-5	0.888	INTRON Amph
2R	9922001	2R_9922001_SNP [dm3] 2R_14034496_SNP [dm6]	C	G	6.573e^-5	0.888	INTRON mam
3R	17491075	3R_17491075_SNP [dm3] 3R_21665353_SNP [dm6]	A	G	6.848e^-5	0.888	INTRON CG15497	TF binding site BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad
3R	8864630	3R_8864630_SNP [dm3] 3R_13038908_SNP [dm6]	A	C	6.883e^-5	0.888	NON_SYNONYMOUS_CODING CG11668 DOWNSTREAM ry
2R	19560237	2R_19560237_SNP [dm3] 2R_23672714_SNP [dm6]	G	A	6.911e^-5	0.888	UTR_5_PRIME Pde8 INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8093009	3R_8093009_SNP [dm3] 3R_12267287_SNP [dm6]	A	G	6.939e^-5	0.888	INTRON svp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
X	4863828	X_4863828_SNP [dm3] X_4969795_SNP [dm6]	C	T	7.016e^-5	0.888	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	960945	3L_960945_SNP [dm3] 3L_960945_SNP [dm6]	C	A	7.028e^-5	0.888	INTRON Glut1
3L	18370177	3L_18370177_INS [dm3] 3L_18377077_INS [dm6]	G	GCAG	7.105e^-5	0.888	INTERGENIC
3L	18370179	3L_18370179_DEL [dm3] 3L_18377079_DEL [dm6]	GA	G	7.186e^-5	0.888	INTERGENIC
3L	4388000	3L_4388000_SNP [dm3] 3L_4388000_SNP [dm6]	T	C	7.210e^-5	0.888	INTRON slow
3L	12750314	3L_12750314_SNP [dm3] 3L_12757214_SNP [dm6]	A	G	7.216e^-5	0.888	SYNONYMOUS_CODING CG32113
X	676416	X_676416_SNP [dm3] X_782383_SNP [dm6]	C	T	7.259e^-5	0.888	NON_SYNONYMOUS_CODING fz3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	13309587	2L_13309587_SNP [dm3] 2L_13309587_SNP [dm6]	G	A	7.281e^-5	0.888	INTRON CG43778	TF binding site mE1_TFBS_chinmo
3L	16436168	3L_16436168_SNP [dm3] 3L_16443068_SNP [dm6]	C	T	7.290e^-5	0.888	INTRON CG33158 & 1 other
X	14507120	X_14507120_SNP [dm3] X_14613087_SNP [dm6]	A	G	7.327e^-5	0.888	INTRON NetA
3L	9196922	3L_9196922_SNP [dm3] 3L_9203822_SNP [dm6]	T	C	7.353e^-5	0.888	INTRON Slc45-1
3R	18191374	3R_18191374_SNP [dm3] 3R_22365652_SNP [dm6]	A	G	7.374e^-5	0.888	SPLICE_SITE_REGION CG5382 DOWNSTREAM CG5380 INTRON CG5382	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	2956821	3R_2956821_SNP [dm3] 3R_7131099_SNP [dm6]	G	T	7.380e^-5	0.888	UPSTREAM CG31493 & 1 other DOWNSTREAM CG31248 INTERGENIC
X	17135703	X_17135703_SNP [dm3] X_17241670_SNP [dm6]	G	C	7.389e^-5	0.888	UTR_3_PRIME CG8915 INTRON f
X	10191831	X_10191831_SNP [dm3] X_10297798_SNP [dm6]	A	G	7.512e^-5	0.888	INTRON alpha-Man-I
3R	22742560	3R_22742560_SNP [dm3] 3R_26916838_SNP [dm6]	T	C	7.585e^-5	0.888	INTRON sda	TF binding site BDTNP1_TFBS_twi
3L	4388011	3L_4388011_SNP [dm3] 3L_4388011_SNP [dm6]	C	T	7.726e^-5	0.888	INTRON slow
2L	16537600	2L_16537600_SNP [dm3] 2L_16537600_SNP [dm6]	G	C	7.729e^-5	0.888	INTERGENIC
3L	14888110	3L_14888110_SNP [dm3] 3L_14895010_SNP [dm6]	A	G	7.806e^-5	0.888	UPSTREAM CG34245 INTERGENIC
2R	18526690	2R_18526690_SNP [dm3] 2R_22639185_SNP [dm6]	C	T	7.808e^-5	0.888	SYNONYMOUS_CODING CG3732 DOWNSTREAM bonsai	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	17365352	X_17365352_SNP [dm3] X_17471319_SNP [dm6]	C	T	7.820e^-5	0.888	INTRON CG43658
X	18370042	X_18370042_SNP [dm3] X_18476009_SNP [dm6]	G	T	7.924e^-5	0.888	INTRON CG32547
X	18370050	X_18370050_INS [dm3] X_18476017_INS [dm6]	T	TA	7.924e^-5	0.888	INTRON CG32547	TF binding site mE1_TFBS_HSA
2R	11660926	2R_11660926_SNP [dm3] 2R_15773421_SNP [dm6]	A	C	8.015e^-5	0.888	DOWNSTREAM Zasp52 INTRON Zasp52
3L	16383366	3L_16383366_SNP [dm3] 3L_16390266_SNP [dm6]	C	T	8.019e^-5	0.888	DOWNSTREAM CG44836 INTRON RAF2
2L	8245991	2L_8245991_SNP [dm3] 2L_8245991_SNP [dm6]	C	G	8.105e^-5	0.888	SYNONYMOUS_CODING CG8086 INTRON CG8086
3L	2822780	3L_2822780_SNP [dm3] 3L_2822780_SNP [dm6]	C	A	8.136e^-5	0.888	INTRON CG43444	TF binding site mE1_TFBS_Trl
2R	11319520	2R_11319520_SNP [dm3] 2R_15432015_SNP [dm6]	G	T	8.270e^-5	0.888	INTRON CG43729
3L	10169267	3L_10169267_SNP [dm3] 3L_10176167_SNP [dm6]	A	G	8.441e^-5	0.888	INTRON dpr10
3R	21244459	3R_21244459_SNP [dm3] 3R_25418737_SNP [dm6]	T	A	8.445e^-5	0.888	INTRON Fur1
X	12896748	X_12896748_SNP [dm3] X_13002715_SNP [dm6]	C	A	8.700e^-5	0.888	INTRON rad
3R	22143624	3R_22143624_SNP [dm3] 3R_26317902_SNP [dm6]	C	T	8.787e^-5	0.888	UPSTREAM CG33970 INTERGENIC
2L	16401749	2L_16401749_SNP [dm3] 2L_16401749_SNP [dm6]	T	C	8.830e^-5	0.888	INTRON CG5888
3R	6219419	3R_6219419_INS [dm3] 3R_10393697_INS [dm6]	C	CCAGC	8.855e^-5	0.888	INTRON cwo
X	9085253	X_9085253_SNP [dm3] X_9191220_SNP [dm6]	G	T	9.034e^-5	0.888	UPSTREAM CG12115 & 1 other INTERGENIC
3L	8437507	3L_8437507_SNP [dm3] 3L_8444407_SNP [dm6]	C	T	9.048e^-5	0.888	SYNONYMOUS_CODING CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	20522732	2L_20522732_SNP [dm3] 2L_20522732_SNP [dm6]	G	A	9.074e^-5	0.888	INTERGENIC
3L	16483144	3L_16483144_SNP [dm3] 3L_16490044_SNP [dm6]	A	C	9.190e^-5	0.888	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	11660921	2R_11660921_SNP [dm3] 2R_15773416_SNP [dm6]	G	T	9.236e^-5	0.888	DOWNSTREAM Zasp52 INTRON Zasp52
3R	26923988	3R_26923988_SNP [dm3] 3R_31098266_SNP [dm6]	G	C	9.271e^-5	0.888	UPSTREAM CG11317 DOWNSTREAM CG15553 INTERGENIC
3R	17491182	3R_17491182_SNP [dm3] 3R_21665460_SNP [dm6]	C	A	9.278e^-5	0.888	INTRON CG15497	TF binding site BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	17365253	X_17365253_SNP [dm3] X_17471220_SNP [dm6]	G	A	9.347e^-5	0.888	INTRON CG43658
3L	7095676	3L_7095676_SNP [dm3] 3L_7102576_SNP [dm6]	C	G	9.356e^-5	0.888	INTRON form3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21641582	3R_21641582_SNP [dm3] 3R_25815860_SNP [dm6]	A	G	9.356e^-5	0.888	SYNONYMOUS_CODING CG14354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13484574	3R_13484574_SNP [dm3] 3R_17658852_SNP [dm6]	G	A	9.390e^-5	0.888	UPSTREAM tRNA:CR31575 INTRON CG14322
2R	8948678	2R_8948678_SNP [dm3] 2R_13061173_SNP [dm6]	C	G	9.430e^-5	0.888	INTRON Drl-2
3L	22548568	3L_22548568_SNP [dm3] 3L_22555468_SNP [dm6]	C	T	9.470e^-5	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	5390310	X_5390310_SNP [dm3] X_5496277_SNP [dm6]	A	G	9.548e^-5	0.888	UPSTREAM frma INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
3L	7468202	3L_7468202_SNP [dm3] 3L_7475102_SNP [dm6]	A	G	9.561e^-5	0.888	UPSTREAM CG43292 INTERGENIC
X	4762971	X_4762971_SNP [dm3] X_4868938_SNP [dm6]	T	A	9.578e^-5	0.888	INTRON CG42594
2L	13257162	2L_13257162_SNP [dm3] 2L_13257162_SNP [dm6]	A	G	9.609e^-5	0.888	UPSTREAM CG31851 INTRON CG31728	TF binding site mE1_TFBS_cad
2L	10005141	2L_10005141_SNP [dm3] 2L_10005141_SNP [dm6]	T	A	9.625e^-5	0.888	UPSTREAM CR44873 INTRON CG4747	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	22029526	3R_22029526_SNP [dm3] 3R_26203804_SNP [dm6]	C	T	9.625e^-5	0.888	INTRON CR44320
2L	13309613	2L_13309613_SNP [dm3] 2L_13309613_SNP [dm6]	C	A	9.785e^-5	0.888	INTRON CG43778	TF binding site mE1_TFBS_chinmo
3R	24827853	3R_24827853_SNP [dm3] 3R_29002131_SNP [dm6]	T	C	9.828e^-5	0.888	INTRON wat	TF binding site BDTNP1_TFBS_twi
3R	4460318	3R_4460318_SNP [dm3] 3R_8634596_SNP [dm6]	G	C	9.828e^-5	0.888	NON_SYNONYMOUS_CODING Or85e
X	6950287	X_6950287_SNP [dm3] X_7056254_SNP [dm6]	G	A	9.883e^-5	0.888	INTRON CG12541
3L	16482989	3L_16482989_SNP [dm3] 3L_16489889_SNP [dm6]	T	A	9.901e^-5	0.888	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	13128712	3L_13128712_SNP [dm3] 3L_13135612_SNP [dm6]	T	C	9.949e^-5	0.888	UPSTREAM CG33262 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19855346	2L_19855346_SNP [dm3] 2L_19855346_SNP [dm6]	A	G	1.001e^-4	0.888	INTRON sick
3R	22143725	3R_22143725_SNP [dm3] 3R_26318003_SNP [dm6]	A	T	1.002e^-4	0.888	UPSTREAM CG33970 INTERGENIC
2L	9465394	2L_9465394_SNP [dm3] 2L_9465394_SNP [dm6]	A	G	1.002e^-4	0.888	INTERGENIC
2L	1069572	2L_1069572_SNP [dm3] 2L_1069572_SNP [dm6]	A	T	1.004e^-4	0.888	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7467554	3L_7467554_SNP [dm3] 3L_7474454_SNP [dm6]	G	A	1.004e^-4	0.888	INTERGENIC
3R	7869185	3R_7869185_SNP [dm3] 3R_12043463_SNP [dm6]	G	T	1.011e^-4	0.888	DOWNSTREAM CG14736 INTERGENIC
3R	22143625	3R_22143625_SNP [dm3] 3R_26317903_SNP [dm6]	A	T	1.011e^-4	0.888	UPSTREAM CG33970 INTERGENIC
3R	20623663	3R_20623663_SNP [dm3] 3R_24797941_SNP [dm6]	G	T	1.046e^-4	0.888	UTR_3_PRIME Ets96B & 1 other
3L	2834128	3L_2834128_SNP [dm3] 3L_2834128_SNP [dm6]	A	G	1.072e^-4	0.888	INTRON CG43444
X	2685418	X_2685418_SNP [dm3] X_2791385_SNP [dm6]	A	T	1.073e^-4	0.888	UPSTREAM CG32795 INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16483094	3L_16483094_SNP [dm3] 3L_16489994_SNP [dm6]	A	G	1.092e^-4	0.888	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	1755418	2L_1755418_SNP [dm3] 2L_1755418_SNP [dm6]	G	T	1.096e^-4	0.888	INTRON Gr22f	TF binding site BDTNP1_TFBS_twi
3L	7450207	3L_7450207_SNP [dm3] 3L_7457107_SNP [dm6]	A	G	1.096e^-4	0.888	INTRON ppk26
X	19000980	X_19000980_SNP [dm3] X_19106947_SNP [dm6]	T	C	1.099e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1381763	3L_1381763_SNP [dm3] 3L_1381763_SNP [dm6]	T	A	1.102e^-4	0.888	INTRON Ptp61F & 1 other
3L	22484285	3L_22484285_SNP [dm3] 3L_22491185_SNP [dm6]	A	G	1.105e^-4	0.888	INTERGENIC
X	4046235	X_4046235_SNP [dm3] X_4152202_SNP [dm6]	T	A	1.110e^-4	0.888	INTRON Fas2
3L	7951753	3L_7951753_SNP [dm3] 3L_7958653_SNP [dm6]	A	C	1.128e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4185867	2L_4185867_SNP [dm3] 2L_4185867_SNP [dm6]	G	A	1.129e^-4	0.888	DOWNSTREAM CG31961 INTRON CR44057	TF binding site BDTNP1_TFBS_twi
2L	4185868	2L_4185868_SNP [dm3] 2L_4185868_SNP [dm6]	T	A	1.129e^-4	0.888	DOWNSTREAM CG31961 INTRON CR44057	TF binding site BDTNP1_TFBS_twi
2L	4185883	2L_4185883_SNP [dm3] 2L_4185883_SNP [dm6]	G	C	1.129e^-4	0.888	DOWNSTREAM CG31961 INTRON CR44057	TF binding site BDTNP1_TFBS_twi
3L	3103216	3L_3103216_SNP [dm3] 3L_3103216_SNP [dm6]	C	T	1.130e^-4	0.888	INTRON Cht7
3R	26199812	3R_26199812_SNP [dm3] 3R_30374090_SNP [dm6]	C	G	1.131e^-4	0.888	INTERGENIC
3R	8516735	3R_8516735_SNP [dm3] 3R_12691013_SNP [dm6]	A	G	1.135e^-4	0.888	SYNONYMOUS_CODING Su_fu_ UPSTREAM Arp1 DOWNSTREAM CG31347	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18304854	3L_18304854_SNP [dm3] 3L_18311754_SNP [dm6]	T	G	1.140e^-4	0.888	INTERGENIC
2L	14758347	2L_14758347_SNP [dm3] 2L_14758347_SNP [dm6]	A	C	1.158e^-4	0.888	INTERGENIC
2R	8491071	2R_8491071_SNP [dm3] 2R_12603566_SNP [dm6]	C	G	1.161e^-4	0.888	INTRON Amph
3R	4047700	3R_4047700_SNP [dm3] 3R_8221978_SNP [dm6]	G	C	1.162e^-4	0.888	UTR_3_PRIME CG18249
3L	7097308	3L_7097308_SNP [dm3] 3L_7104208_SNP [dm6]	A	G	1.170e^-4	0.888	INTRON form3
X	858620	X_858620_INS [dm3] X_964587_INS [dm6]	T	TATACATACTTGT...	1.173e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	5035525	X_5035525_SNP [dm3] X_5141492_SNP [dm6]	T	A	1.173e^-4	0.888	INTRON rg & 1 other
2L	10702533	2L_10702533_SNP [dm3] 2L_10702533_SNP [dm6]	A	G	1.175e^-4	0.888	SYNONYMOUS_CODING Lip2 UPSTREAM Lip1
3L	8816908	3L_8816908_SNP [dm3] 3L_8823808_SNP [dm6]	A	T	1.182e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_cad
3R	22143663	3R_22143663_SNP [dm3] 3R_26317941_SNP [dm6]	A	G	1.183e^-4	0.888	UPSTREAM CG33970 INTERGENIC
3L	18368276	3L_18368276_MNP [dm3] 3L_18375176_MNP [dm6]	TTAGGG	CCCTAA	1.184e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18385070	3L_18385070_SNP [dm3] 3L_18391970_SNP [dm6]	A	G	1.188e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	16222394	X_16222394_DEL [dm3] X_16328361_DEL [dm6]	TCT	T	1.191e^-4	0.888	UTR_3_PRIME CalpC DOWNSTREAM CG9919
2R	14278029	2R_14278029_DEL [dm3] 2R_18390524_DEL [dm6]	CACATCATTGG...	TTATA	1.191e^-4	0.888	DOWNSTREAM CG15065 INTRON CG15068
3L	14814612	3L_14814612_SNP [dm3] 3L_14821512_SNP [dm6]	T	C	1.193e^-4	0.888	INTRON CG17839
2R	19127055	2R_19127055_INS [dm3] 2R_23239532_INS [dm6]	G	GAG	1.204e^-4	0.888	INTERGENIC
X	1891565	X_1891565_SNP [dm3] X_1997532_SNP [dm6]	G	C	1.205e^-4	0.888	INTRON Hr4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	1583280	3L_1583280_SNP [dm3] 3L_1583280_SNP [dm6]	G	A	1.207e^-4	0.888	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	5011336	X_5011336_SNP [dm3] X_5117303_SNP [dm6]	G	A	1.208e^-4	0.888	INTRON rg & 1 other
X	18370044	X_18370044_SNP [dm3] X_18476011_SNP [dm6]	T	A	1.212e^-4	0.888	INTRON CG32547
2R	9773544	2R_9773544_SNP [dm3] 2R_13886039_SNP [dm6]	C	A	1.213e^-4	0.888	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22018095	3R_22018095_SNP [dm3] 3R_26192373_SNP [dm6]	C	A	1.220e^-4	0.888	INTERGENIC
2L	13274223	2L_13274223_SNP [dm3] 2L_13274223_SNP [dm6]	T	G	1.231e^-4	0.888	INTRON CG44085
2L	10049970	2L_10049970_SNP [dm3] 2L_10049970_SNP [dm6]	A	G	1.234e^-4	0.888	NON_SYNONYMOUS_CODING CG33301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8493714	2L_8493714_SNP [dm3] 2L_8493714_SNP [dm6]	T	G	1.238e^-4	0.888	INTRON Dh31
2L	4292811	2L_4292811_DEL [dm3] 2L_4292811_DEL [dm6]	TG	T	1.257e^-4	0.888	INTRON tutl
2L	4292816	2L_4292816_SNP [dm3] 2L_4292816_SNP [dm6]	A	T	1.257e^-4	0.888	INTRON tutl
2L	4292827	2L_4292827_DEL [dm3] 2L_4292827_DEL [dm6]	GATAAAAGG	G	1.257e^-4	0.888	INTRON tutl
3R	22516081	3R_22516081_SNP [dm3] 3R_26690359_SNP [dm6]	C	T	1.257e^-4	0.888	INTERGENIC
3R	22516082	3R_22516082_SNP [dm3] 3R_26690360_SNP [dm6]	T	A	1.257e^-4	0.888	INTERGENIC
3R	22516103	3R_22516103_SNP [dm3] 3R_26690381_SNP [dm6]	C	G	1.257e^-4	0.888	INTERGENIC
3L	4388005	3L_4388005_DEL [dm3] 3L_4388005_DEL [dm6]	AGAA	C	1.260e^-4	0.888	INTRON slow
2L	18905347	2L_18905347_SNP [dm3] 2L_18905347_SNP [dm6]	C	T	1.265e^-4	0.888	UPSTREAM CR44738 INTERGENIC
3R	26037729	3R_26037729_SNP [dm3] 3R_30212007_SNP [dm6]	T	A	1.273e^-4	0.888	UPSTREAM CecA2 & 1 other DOWNSTREAM CecA1 & 1 other INTERGENIC
3R	20204014	3R_20204014_SNP [dm3] 3R_24378292_SNP [dm6]	A	G	1.276e^-4	0.888	DOWNSTREAM CG33342 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16009514	2R_16009514_SNP [dm3] 2R_20122009_SNP [dm6]	G	A	1.280e^-4	0.888	INTERGENIC
3L	7297849	3L_7297849_SNP [dm3] 3L_7304749_SNP [dm6]	C	G	1.296e^-4	0.888	INTRON unc-13-4A
2L	13142544	2L_13142544_SNP [dm3] 2L_13142544_SNP [dm6]	T	A	1.299e^-4	0.888	UTR_3_PRIME CG9928 DOWNSTREAM CG16978
2L	4292410	2L_4292410_SNP [dm3] 2L_4292410_SNP [dm6]	G	C	1.308e^-4	0.888	INTRON tutl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9197107	3L_9197107_SNP [dm3] 3L_9204007_SNP [dm6]	T	C	1.312e^-4	0.888	INTRON Slc45-1	TF binding site mE1_TFBS_inv
3R	8052740	3R_8052740_DEL [dm3] 3R_12227018_DEL [dm6]	CTCC	C	1.319e^-4	0.888	UPSTREAM CG12256 DOWNSTREAM CR43477 INTERGENIC
2R	9694641	2R_9694641_SNP [dm3] 2R_13807136_SNP [dm6]	G	A	1.324e^-4	0.888	INTRON stj	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9197118	3L_9197118_SNP [dm3] 3L_9204018_SNP [dm6]	T	C	1.330e^-4	0.888	INTRON Slc45-1	TF binding site mE1_TFBS_inv
X	13441692	X_13441692_SNP [dm3] X_13547659_SNP [dm6]	T	A	1.337e^-4	0.888	INTERGENIC
2R	5112641	2R_5112641_SNP [dm3] 2R_9225136_SNP [dm6]	A	G	1.338e^-4	0.888	INTERGENIC
3R	26231012	3R_26231012_SNP [dm3] 3R_30405290_SNP [dm6]	T	A	1.351e^-4	0.888	DOWNSTREAM CR45570 INTERGENIC
3L	16366810	3L_16366810_SNP [dm3] 3L_16373710_SNP [dm6]	T	C	1.369e^-4	0.888	UTR_3_PRIME roq
2R	15790644	2R_15790644_SNP [dm3] 2R_19903139_SNP [dm6]	G	C	1.370e^-4	0.888	INTERGENIC
3R	5121779	3R_5121779_SNP [dm3] 3R_9296057_SNP [dm6]	A	T	1.372e^-4	0.888	INTRON CG8861
3L	4387930	3L_4387930_SNP [dm3] 3L_4387930_SNP [dm6]	T	A	1.373e^-4	0.888	INTRON slow
2R	19110396	2R_19110396_SNP [dm3] 2R_23222873_SNP [dm6]	G	A	1.374e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25993140	3R_25993140_SNP [dm3] 3R_30167418_SNP [dm6]	A	C	1.375e^-4	0.888	NON_SYNONYMOUS_CODING CG31028 UPSTREAM CG31030
2R	9063120	2R_9063120_SNP [dm3] 2R_13175615_SNP [dm6]	G	T	1.377e^-4	0.888	DOWNSTREAM AGBE & 3 others INTRON CG33137
X	705792	X_705792_SNP [dm3] X_811759_SNP [dm6]	T	C	1.381e^-4	0.888	INTRON CG43867	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19981422	X_19981422_SNP [dm3] X_20087389_SNP [dm6]	G	T	1.381e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	22482412	3L_22482412_SNP [dm3] 3L_22489312_SNP [dm6]	C	T	1.382e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	6050190	3L_6050190_SNP [dm3] 3L_6057090_SNP [dm6]	C	T	1.383e^-4	0.888	DOWNSTREAM tan INTERGENIC
2L	10156015	2L_10156015_SNP [dm3] 2L_10156015_SNP [dm6]	T	A	1.402e^-4	0.888	UTR_3_PRIME CG4839 DOWNSTREAM CG4839 INTRON CG44153
3R	22687546	3R_22687546_SNP [dm3] 3R_26861824_SNP [dm6]	T	C	1.404e^-4	0.888	SYNONYMOUS_CODING Lerp UPSTREAM mir-1012
3R	14644341	3R_14644341_SNP [dm3] 3R_18818619_SNP [dm6]	T	C	1.406e^-4	0.888	INTRON CG18208
3L	10101419	3L_10101419_SNP [dm3] 3L_10108319_SNP [dm6]	T	C	1.406e^-4	0.888	INTRON dpr6
3R	10326990	3R_10326990_SNP [dm3] 3R_14501268_SNP [dm6]	T	C	1.408e^-4	0.888	INTRON CR44177
X	4392259	X_4392259_SNP [dm3] X_4498226_SNP [dm6]	C	A	1.410e^-4	0.888	INTRON CR32773	TF binding site mE1_TFBS_inv mE1_TFBS_sens
X	4436245	X_4436245_SNP [dm3] X_4542212_SNP [dm6]	G	A	1.414e^-4	0.888	UTR_3_PRIME CHOp24 UPSTREAM CG3568 INTRON CR32773
3L	10133828	3L_10133828_SNP [dm3] 3L_10140728_SNP [dm6]	G	C	1.419e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1889566	2L_1889566_SNP [dm3] 2L_1889566_SNP [dm6]	G	A	1.421e^-4	0.888	INTRON CG7337
3L	4513429	3L_4513429_SNP [dm3] 3L_4513429_SNP [dm6]	T	G	1.422e^-4	0.888	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9156846	3L_9156846_SNP [dm3] 3L_9163746_SNP [dm6]	C	G	1.426e^-4	0.888	INTRON Rdl
3L	5329546	3L_5329546_SNP [dm3] 3L_5336446_SNP [dm6]	A	T	1.439e^-4	0.888	INTERGENIC
2R	19022313	2R_19022313_SNP [dm3] 2R_23134790_SNP [dm6]	G	T	1.442e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	2026557	2L_2026557_INS [dm3] 2L_2026557_INS [dm6]	G	GG	1.447e^-4	0.888	INTRON CG4238	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9762822	2L_9762822_SNP [dm3] 2L_9762822_SNP [dm6]	C	A	1.452e^-4	0.888	SYNONYMOUS_CODING Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	17491177	3R_17491177_SNP [dm3] 3R_21665455_SNP [dm6]	G	T	1.463e^-4	0.888	INTRON CG15497	TF binding site BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	22031564	3R_22031564_SNP [dm3] 3R_26205842_SNP [dm6]	C	T	1.474e^-4	0.888	INTRON CR44320
3L	7095876	3L_7095876_SNP [dm3] 3L_7102776_SNP [dm6]	C	G	1.484e^-4	0.888	INTRON form3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7450209	3L_7450209_SNP [dm3] 3L_7457109_SNP [dm6]	C	A	1.487e^-4	0.888	INTRON ppk26
2L	3488859	2L_3488859_SNP [dm3] 2L_3488859_SNP [dm6]	G	C	1.487e^-4	0.888	INTRON CG15414
3R	21415783	3R_21415783_DEL [dm3] 3R_25590061_DEL [dm6]	GT	A	1.496e^-4	0.888	INTRON msi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	17365258	X_17365258_SNP [dm3] X_17471225_SNP [dm6]	A	G	1.499e^-4	0.888	INTRON CG43658
3R	8128028	3R_8128028_SNP [dm3] 3R_12302306_SNP [dm6]	T	C	1.500e^-4	0.888	UTR_3_PRIME svp
3R	24827777	3R_24827777_SNP [dm3] 3R_29002055_SNP [dm6]	C	T	1.501e^-4	0.888	INTRON wat	TF binding site BDTNP1_TFBS_twi
3L	4387922	3L_4387922_SNP [dm3] 3L_4387922_SNP [dm6]	C	G	1.506e^-4	0.888	INTRON slow
3R	15045428	3R_15045428_SNP [dm3] 3R_19219706_SNP [dm6]	C	T	1.514e^-4	0.888	INTRON vib
2L	3488842	2L_3488842_SNP [dm3] 2L_3488842_SNP [dm6]	A	G	1.520e^-4	0.888	INTRON CG15414
2R	9543119	2R_9543119_SNP [dm3] 2R_13655614_SNP [dm6]	T	C	1.521e^-4	0.888	INTRON fas	TF binding site mE1_TFBS_chinmo
3L	16483145	3L_16483145_SNP [dm3] 3L_16490045_SNP [dm6]	C	T	1.528e^-4	0.888	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	19423867	3L_19423867_SNP [dm3] 3L_19430767_SNP [dm6]	C	A	1.536e^-4	0.888	INTERGENIC
3R	24212944	3R_24212944_SNP [dm3] 3R_28387222_SNP [dm6]	A	T	1.542e^-4	0.888	INTERGENIC
2L	8245979	2L_8245979_SNP [dm3] 2L_8245979_SNP [dm6]	G	T	1.550e^-4	0.888	NON_SYNONYMOUS_CODING CG8086 INTRON CG8086
3L	10169467	3L_10169467_SNP [dm3] 3L_10176367_SNP [dm6]	T	A	1.561e^-4	0.888	INTRON dpr10
2R	9318902	2R_9318902_SNP [dm3] 2R_13431397_SNP [dm6]	T	A	1.562e^-4	0.888	UPSTREAM tRNA:I:49Fd & 2 others DOWNSTREAM tRNA:I:49Fb & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	12655503	2L_12655503_SNP [dm3] 2L_12655503_SNP [dm6]	A	G	1.567e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9197113	3L_9197113_SNP [dm3] 3L_9204013_SNP [dm6]	T	A	1.571e^-4	0.888	INTRON Slc45-1	TF binding site mE1_TFBS_inv
2R	5509158	2R_5509158_SNP [dm3] 2R_9621653_SNP [dm6]	A	C	1.578e^-4	0.888	UPSTREAM mir-307a DOWNSTREAM mir-307b INTRON Mmp2
3L	7469429	3L_7469429_DEL [dm3] 3L_7476329_DEL [dm6]	GTTAA	G	1.580e^-4	0.888	DOWNSTREAM CG43292 INTERGENIC
3L	7586759	3L_7586759_SNP [dm3] 3L_7593659_SNP [dm6]	A	T	1.587e^-4	0.888	INTRON CG33275
X	848919	X_848919_SNP [dm3] X_954886_SNP [dm6]	C	A	1.593e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9935461	2L_9935461_SNP [dm3] 2L_9935461_SNP [dm6]	T	A	1.604e^-4	0.888	INTRON CG31712
3L	14416570	3L_14416570_DEL [dm3] 3L_14423470_DEL [dm6]	TTGAGTG	T	1.607e^-4	0.888	INTRON bbg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8123000	3R_8123000_SNP [dm3] 3R_12297278_SNP [dm6]	T	C	1.621e^-4	0.888	INTRON svp	TF binding site mE1_TFBS_cad
2L	8215560	2L_8215560_SNP [dm3] 2L_8215560_SNP [dm6]	A	T	1.625e^-4	0.888	UPSTREAM CG8349 DOWNSTREAM CG8353 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8778036	3L_8778036_DEL [dm3] 3L_8784936_DEL [dm6]	TGAAG	T	1.629e^-4	0.888	INTRON Fhos	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	17164428	X_17164428_SNP [dm3] X_17270395_SNP [dm6]	C	G	1.633e^-4	0.888	INTRON f
2L	16562624	2L_16562624_SNP [dm3] 2L_16562624_SNP [dm6]	T	C	1.639e^-4	0.888	INTRON CG42389
3L	3897670	3L_3897670_SNP [dm3] 3L_3897670_SNP [dm6]	T	C	1.647e^-4	0.888	NON_SYNONYMOUS_CODING Ccz1 DOWNSTREAM CG14977	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_sens
3R	6924336	3R_6924336_SNP [dm3] 3R_11098614_SNP [dm6]	T	A	1.651e^-4	0.888	INTERGENIC
2R	10895754	2R_10895754_SNP [dm3] 2R_15008249_SNP [dm6]	C	T	1.651e^-4	0.888	INTERGENIC
3L	11352490	3L_11352490_SNP [dm3] 3L_11359390_SNP [dm6]	A	G	1.652e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18923926	2R_18923926_SNP [dm3] 2R_23036403_SNP [dm6]	A	T	1.659e^-4	0.888	INTRON twi & 1 other	TF binding site mE1_TFBS_inv
3L	7193790	3L_7193790_SNP [dm3] 3L_7200690_SNP [dm6]	T	A	1.661e^-4	0.888	INTERGENIC
3L	1368373	3L_1368373_SNP [dm3] 3L_1368373_SNP [dm6]	G	C	1.664e^-4	0.888	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15536132	2L_15536132_SNP [dm3] 2L_15536132_SNP [dm6]	C	G	1.677e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10169265	3L_10169265_SNP [dm3] 3L_10176165_SNP [dm6]	G	T	1.695e^-4	0.888	INTRON dpr10
2R	9717330	2R_9717330_SNP [dm3] 2R_13829825_SNP [dm6]	G	A	1.696e^-4	0.888	SYNONYMOUS_CODING CG6329	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7297171	2L_7297171_SNP [dm3] 2L_7297171_SNP [dm6]	T	G	1.697e^-4	0.888	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19760836	3R_19760836_SNP [dm3] 3R_23935114_SNP [dm6]	T	G	1.698e^-4	0.888	SYNONYMOUS_CODING CG5854 DOWNSTREAM Gdh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16401797	2L_16401797_SNP [dm3] 2L_16401797_SNP [dm6]	T	G	1.703e^-4	0.888	INTRON CG5888
2L	12113851	2L_12113851_INS [dm3] 2L_12113851_INS [dm6]	T	TTGTAAGTTTTGTTT...	1.709e^-4	0.888	UPSTREAM CG17211 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	12019060	3L_12019060_SNP [dm3] 3L_12025960_SNP [dm6]	C	T	1.722e^-4	0.888	INTRON rols
X	2685522	X_2685522_SNP [dm3] X_2791489_SNP [dm6]	A	G	1.726e^-4	0.888	SYNONYMOUS_CODING w UPSTREAM CG32795 INTRON kirre	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8123460	3R_8123460_SNP [dm3] 3R_12297738_SNP [dm6]	T	C	1.726e^-4	0.888	INTRON svp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1251741	3L_1251741_SNP [dm3] 3L_1251741_SNP [dm6]	C	T	1.728e^-4	0.888	UTR_3_PRIME CG9129 UPSTREAM CG9130 & 1 other	TF binding site mE1_TFBS_cad
3R	17491808	3R_17491808_SNP [dm3] 3R_21666086_SNP [dm6]	T	C	1.730e^-4	0.888	SYNONYMOUS_CODING CG15497 DOWNSTREAM DNApol-alpha180	TF binding site BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	725004	2L_725004_SNP [dm3] 2L_725004_SNP [dm6]	C	T	1.736e^-4	0.888	INTERGENIC
3L	19854109	3L_19854109_SNP [dm3] 3L_19861009_SNP [dm6]	G	T	1.746e^-4	0.888	UPSTREAM CR45433 DOWNSTREAM Papss INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	219452	X_219452_SNP [dm3] X_325419_SNP [dm6]	A	T	1.755e^-4	0.888	INTRON CG3777 & 1 other
3L	5155902	3L_5155902_DEL [dm3] 3L_5162802_DEL [dm6]	TT	T	1.755e^-4	0.888	INTRON shep
2R	5510406	2R_5510406_SNP [dm3] 2R_9622901_SNP [dm6]	A	G	1.757e^-4	0.888	INTRON Mmp2
2L	19615720	2L_19615720_SNP [dm3] 2L_19615720_SNP [dm6]	G	A	1.758e^-4	0.888	INTRON Lar
3R	23849943	3R_23849943_SNP [dm3] 3R_28024221_SNP [dm6]	G	A	1.768e^-4	0.888	INTERGENIC
2R	11148100	2R_11148100_SNP [dm3] 2R_15260595_SNP [dm6]	A	C	1.773e^-4	0.888	SYNONYMOUS_CODING ItgalphaPS4
2R	4482207	2R_4482207_INS [dm3] 2R_8594702_INS [dm6]	T	TATGTGTTT	1.779e^-4	0.888	INTRON CG8736	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7470171	3L_7470171_SNP [dm3] 3L_7477071_SNP [dm6]	C	T	1.781e^-4	0.888	DOWNSTREAM CG43292 INTERGENIC
3R	26036287	3R_26036287_DEL [dm3] 3R_30210565_DEL [dm6]	TTT	T	1.789e^-4	0.888	UPSTREAM CecA1 & 1 other DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
X	5864566	X_5864566_SNP [dm3] X_5970533_SNP [dm6]	G	T	1.793e^-4	0.888	INTRON Grip	TF binding site BDTNP1_TFBS_da
X	997586	X_997586_SNP [dm3] X_1103553_SNP [dm6]	G	A	1.797e^-4	0.888	INTRON CG3655
X	2448815	X_2448815_SNP [dm3] X_2554782_SNP [dm6]	T	A	1.798e^-4	0.888	INTRON Pdfr
3L	8312585	3L_8312585_SNP [dm3] 3L_8319485_SNP [dm6]	A	T	1.799e^-4	0.888	UPSTREAM CG43059 INTERGENIC
3L	17139410	3L_17139410_SNP [dm3] 3L_17146310_SNP [dm6]	G	T	1.800e^-4	0.888	INTRON Rbp6	TF binding site mE1_TFBS_cad
3L	7441633	3L_7441633_DEL [dm3] 3L_7448533_DEL [dm6]	AGT	A	1.802e^-4	0.888	INTRON CG42458
X	9085260	X_9085260_SNP [dm3] X_9191227_SNP [dm6]	C	T	1.808e^-4	0.888	UPSTREAM CG12115 & 1 other INTERGENIC
2L	2164500	2L_2164500_SNP [dm3] 2L_2164500_SNP [dm6]	T	C	1.818e^-4	0.888	INTRON aop	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	22033882	3R_22033882_SNP [dm3] 3R_26208160_SNP [dm6]	T	A	1.819e^-4	0.888	INTRON CR44320
X	4375072	X_4375072_SNP [dm3] X_4481039_SNP [dm6]	C	A	1.832e^-4	0.888	INTRON CR32773 & 1 other
2R	18146344	2R_18146344_SNP [dm3] 2R_22258839_SNP [dm6]	C	A	1.840e^-4	0.888	INTRON dve
3R	22415583	3R_22415583_SNP [dm3] 3R_26589861_SNP [dm6]	G	T	1.842e^-4	0.888	INTRON scrib
2L	4292820	2L_4292820_SNP [dm3] 2L_4292820_SNP [dm6]	C	T	1.843e^-4	0.888	INTRON tutl
2L	8246030	2L_8246030_SNP [dm3] 2L_8246030_SNP [dm6]	G	A	1.852e^-4	0.888	SYNONYMOUS_CODING CG8086 INTRON CG8086
2L	9681099	2L_9681099_SNP [dm3] 2L_9681099_SNP [dm6]	G	C	1.852e^-4	0.888	INTERGENIC
X	19000669	X_19000669_SNP [dm3] X_19106636_SNP [dm6]	G	T	1.852e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18550548	2L_18550548_SNP [dm3] 2L_18550548_SNP [dm6]	T	C	1.854e^-4	0.888	INTRON Pde11
3R	22243821	3R_22243821_SNP [dm3] 3R_26418099_SNP [dm6]	T	G	1.858e^-4	0.888	INTERGENIC
3R	22243822	3R_22243822_SNP [dm3] 3R_26418100_SNP [dm6]	T	G	1.858e^-4	0.888	INTERGENIC
3L	8867977	3L_8867977_SNP [dm3] 3L_8874877_SNP [dm6]	T	C	1.861e^-4	0.888	INTRON dally
3R	22143806	3R_22143806_SNP [dm3] 3R_26318084_SNP [dm6]	C	T	1.865e^-4	0.888	UPSTREAM CG33970 INTERGENIC
3R	9500586	3R_9500586_SNP [dm3] 3R_13674864_SNP [dm6]	A	T	1.866e^-4	0.888	UPSTREAM Task6 DOWNSTREAM CG9588 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sbb mE1_TFBS_Trl
3L	18878519	3L_18878519_INS [dm3] 3L_18885419_INS [dm6]	T	TAAAAAATTTTTTGAA...	1.871e^-4	0.888	UPSTREAM CG3961 INTRON CG3961
3L	15969498	3L_15969498_SNP [dm3] 3L_15976398_SNP [dm6]	T	A	1.884e^-4	0.888	UTR_3_PRIME CG17026 UPSTREAM CG17029 INTRON brm
3R	15158204	3R_15158204_SNP [dm3] 3R_19332482_SNP [dm6]	G	T	1.887e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	9762889	2L_9762889_SNP [dm3] 2L_9762889_SNP [dm6]	G	C	1.893e^-4	0.888	UPSTREAM und DOWNSTREAM zf30C INTRON Taf11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	16532405	2L_16532405_SNP [dm3] 2L_16532405_SNP [dm6]	T	C	1.894e^-4	0.888	INTRON CG5953	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	11066152	3L_11066152_SNP [dm3] 3L_11073052_SNP [dm6]	T	C	1.903e^-4	0.888	SYNONYMOUS_CODING Mocs1 UTR_3_PRIME Mocs1 DOWNSTREAM l_3_01239
3R	26212870	3R_26212870_SNP [dm3] 3R_30387148_SNP [dm6]	A	G	1.913e^-4	0.888	UTR_5_PRIME Fer1HCH UPSTREAM Fer2LCH INTRON Fer1HCH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_Trl
X	19173973	X_19173973_SNP [dm3] X_19279940_SNP [dm6]	C	T	1.914e^-4	0.888	SYNONYMOUS_CODING CG8028 UTR_5_PRIME CG8028
3L	17680037	3L_17680037_SNP [dm3] 3L_17686937_SNP [dm6]	G	A	1.920e^-4	0.888	INTERGENIC
3R	26209115	3R_26209115_SNP [dm3] 3R_30383393_SNP [dm6]	T	C	1.923e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9768458	3L_9768458_SNP [dm3] 3L_9775358_SNP [dm6]	G	C	1.930e^-4	0.888	INTRON CG8177
3L	8547262	3L_8547262_SNP [dm3] 3L_8554162_SNP [dm6]	T	A	1.934e^-4	0.888	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1251868	3L_1251868_SNP [dm3] 3L_1251868_SNP [dm6]	T	C	1.938e^-4	0.888	UPSTREAM CG9130 & 1 other DOWNSTREAM CG9129 INTERGENIC
2L	16329013	2L_16329013_SNP [dm3] 2L_16329013_SNP [dm6]	C	T	1.945e^-4	0.888	NON_SYNONYMOUS_CODING mRpL4 UPSTREAM CG4440 DOWNSTREAM CG4278	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1838884	2L_1838884_SNP [dm3] 2L_1838884_SNP [dm6]	C	A	1.947e^-4	0.888	DOWNSTREAM CR44073 INTRON wry
2L	9763025	2L_9763025_SNP [dm3] 2L_9763025_SNP [dm6]	C	T	1.947e^-4	0.888	SYNONYMOUS_CODING Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14887406	3R_14887406_SNP [dm3] 3R_19061684_SNP [dm6]	T	C	1.951e^-4	0.888	INTRON cdi
2L	12113850	2L_12113850_SNP [dm3] 2L_12113850_SNP [dm6]	G	C	1.955e^-4	0.888	UPSTREAM CG17211 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	2217979	3L_2217979_SNP [dm3] 3L_2217979_SNP [dm6]	C	G	1.955e^-4	0.888	INTERGENIC
X	9735171	X_9735171_SNP [dm3] X_9841138_SNP [dm6]	C	T	1.964e^-4	0.888	INTRON CG32698
3L	15810828	3L_15810828_SNP [dm3] 3L_15817728_SNP [dm6]	C	T	1.971e^-4	0.888	NON_SYNONYMOUS_CODING CkIIalpha-i1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3L	12750309	3L_12750309_SNP [dm3] 3L_12757209_SNP [dm6]	C	G	1.975e^-4	0.888	NON_SYNONYMOUS_CODING CG32113
3R	2958699	3R_2958699_SNP [dm3] 3R_7132977_SNP [dm6]	C	T	1.977e^-4	0.888	DOWNSTREAM CG31493 INTERGENIC
3R	15416657	3R_15416657_SNP [dm3] 3R_19590935_SNP [dm6]	C	T	1.982e^-4	0.888	INTRON Dys	TF binding site mE1_TFBS_cad
2R	13899487	2R_13899487_INS [dm3] 2R_18011982_INS [dm6]	C	CC	1.982e^-4	0.888	INTERGENIC
2L	7911740	2L_7911740_SNP [dm3] 2L_7911740_SNP [dm6]	T	C	1.984e^-4	0.888	INTRON Snoo
3L	7469422	3L_7469422_DEL [dm3] 3L_7476322_DEL [dm6]	ACT	A	1.987e^-4	0.888	DOWNSTREAM CG43292 INTERGENIC
3L	9197111	3L_9197111_SNP [dm3] 3L_9204011_SNP [dm6]	T	A	1.988e^-4	0.888	INTRON Slc45-1	TF binding site mE1_TFBS_inv
2L	10048714	2L_10048714_SNP [dm3] 2L_10048714_SNP [dm6]	C	T	1.988e^-4	0.888	UPSTREAM CG33301 INTERGENIC
2L	9681103	2L_9681103_SNP [dm3] 2L_9681103_SNP [dm6]	C	T	1.988e^-4	0.888	INTERGENIC
2R	10234908	2R_10234908_SNP [dm3] 2R_14347403_SNP [dm6]	T	C	1.989e^-4	0.888	INTRON Shroom
2R	11976356	2R_11976356_SNP [dm3] 2R_16088851_SNP [dm6]	C	A	1.995e^-4	0.888	INTRON Dg
3L	2036815	3L_2036815_SNP [dm3] 3L_2036815_SNP [dm6]	T	G	1.996e^-4	0.888	DOWNSTREAM CG42355 INTERGENIC
3L	16325736	3L_16325736_SNP [dm3] 3L_16332636_SNP [dm6]	A	T	1.999e^-4	0.888	UTR_3_PRIME retinin UPSTREAM CG13056 DOWNSTREAM CG33060	TF binding site mE1_TFBS_cad
2L	12353693	2L_12353693_SNP [dm3] 2L_12353693_SNP [dm6]	C	T	2.002e^-4	0.888	INTRON bru-2
X	4375150	X_4375150_SNP [dm3] X_4481117_SNP [dm6]	C	T	2.003e^-4	0.888	INTRON CR32773 & 1 other
3L	5327017	3L_5327017_SNP [dm3] 3L_5333917_SNP [dm6]	T	G	2.007e^-4	0.888	UPSTREAM CR45742 INTERGENIC
3L	8778008	3L_8778008_SNP [dm3] 3L_8784908_SNP [dm6]	G	T	2.007e^-4	0.888	INTRON Fhos	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	1251718	3L_1251718_SNP [dm3] 3L_1251718_SNP [dm6]	G	T	2.009e^-4	0.888	UTR_3_PRIME CG9129 UPSTREAM CG9130 & 1 other	TF binding site mE1_TFBS_cad
2L	4331305	2L_4331305_SNP [dm3] 2L_4331305_SNP [dm6]	A	C	2.009e^-4	0.888	SYNONYMOUS_CODING CG16857	TF binding site mE1_TFBS_chinmo
2L	10103704	2L_10103704_SNP [dm3] 2L_10103704_SNP [dm6]	G	A	2.020e^-4	0.888	SYNONYMOUS_CODING CG34109 INTRON CG44153
3L	1583279	3L_1583279_SNP [dm3] 3L_1583279_SNP [dm6]	T	G	2.021e^-4	0.888	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	9998801	2L_9998801_SNP [dm3] 2L_9998801_SNP [dm6]	C	T	2.023e^-4	0.888	SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5102965	X_5102965_SNP [dm3] X_5208932_SNP [dm6]	G	T	2.028e^-4	0.888	INTRON CG15465 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2289627	3L_2289627_SNP [dm3] 3L_2289627_SNP [dm6]	G	A	2.034e^-4	0.888	INTRON MsR2
2R	9921997	2R_9921997_SNP [dm3] 2R_14034492_SNP [dm6]	G	T	2.036e^-4	0.888	INTRON mam
X	22225893	X_22225893_SNP [dm3] X_22824057_SNP [dm6]	C	G	2.038e^-4	0.888	DOWNSTREAM fog INTERGENIC	transposable element FlyBase
2L	9762848	2L_9762848_SNP [dm3] 2L_9762848_SNP [dm6]	A	G	2.071e^-4	0.888	UPSTREAM und DOWNSTREAM zf30C INTRON Taf11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	12751897	3L_12751897_SNP [dm3] 3L_12758797_SNP [dm6]	T	C	2.075e^-4	0.888	INTRON CG32113
X	12403770	X_12403770_SNP [dm3] X_12509737_SNP [dm6]	A	C	2.076e^-4	0.888	INTRON CG2556
3L	7193744	3L_7193744_SNP [dm3] 3L_7200644_SNP [dm6]	T	C	2.077e^-4	0.888	INTERGENIC
2R	9080496	2R_9080496_SNP [dm3] 2R_13192991_SNP [dm6]	C	A	2.095e^-4	0.888	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3L	2126799	3L_2126799_SNP [dm3] 3L_2126799_SNP [dm6]	G	A	2.096e^-4	0.888	INTRON zormin
3R	25992644	3R_25992644_SNP [dm3] 3R_30166922_SNP [dm6]	A	G	2.098e^-4	0.888	UPSTREAM CG31030 INTRON CG31028	TF binding site BDTNP1_TFBS_twi
X	5512098	X_5512098_SNP [dm3] X_5618065_SNP [dm6]	G	A	2.101e^-4	0.888	SYNONYMOUS_CODING RhoGAP5A	TF binding site mE1_TFBS_chinmo
3L	12750458	3L_12750458_SNP [dm3] 3L_12757358_SNP [dm6]	G	A	2.122e^-4	0.888	SYNONYMOUS_CODING CG32113
3L	14581209	3L_14581209_SNP [dm3] 3L_14588109_SNP [dm6]	C	T	2.134e^-4	0.888	INTRON HGTX	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15242128	3L_15242128_SNP [dm3] 3L_15249028_SNP [dm6]	C	G	2.170e^-4	0.888	INTERGENIC
3R	4357902	3R_4357902_SNP [dm3] 3R_8532180_SNP [dm6]	C	T	2.173e^-4	0.888	INTERGENIC
X	14308226	X_14308226_SNP [dm3] X_14414193_SNP [dm6]	G	A	2.173e^-4	0.888	INTRON dpr8
X	5428601	X_5428601_SNP [dm3] X_5534568_SNP [dm6]	C	G	2.176e^-4	0.888	INTRON Vsx2	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	14556006	3R_14556006_SNP [dm3] 3R_18730284_SNP [dm6]	T	C	2.184e^-4	0.888	INTRON Cha	TF binding site mE1_TFBS_chinmo
3R	23849948	3R_23849948_SNP [dm3] 3R_28024226_SNP [dm6]	C	T	2.191e^-4	0.888	INTERGENIC
3L	10345680	3L_10345680_SNP [dm3] 3L_10352580_SNP [dm6]	C	A	2.192e^-4	0.888	INTRON CR44327
3R	13844401	3R_13844401_SNP [dm3] 3R_18018679_SNP [dm6]	A	C	2.204e^-4	0.888	UTR_3_PRIME cpo UPSTREAM DNaseII	TF binding site BDTNP1_TFBS_twi
3R	13484682	3R_13484682_SNP [dm3] 3R_17658960_SNP [dm6]	T	C	2.211e^-4	0.888	UPSTREAM tRNA:CR31575 INTRON CG14322
2R	18475312	2R_18475312_SNP [dm3] 2R_22587807_SNP [dm6]	C	A	2.223e^-4	0.888	INTRON dnr1
2L	4345287	2L_4345287_SNP [dm3] 2L_4345287_SNP [dm6]	A	G	2.225e^-4	0.888	UTR_3_PRIME Atet	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	1838879	2L_1838879_INS [dm3] 2L_1838879_INS [dm6]	C	TAT	2.236e^-4	0.888	DOWNSTREAM CR44073 INTRON wry
3L	7143107	3L_7143107_SNP [dm3] 3L_7150007_SNP [dm6]	T	A	2.244e^-4	0.888	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	20317816	2R_20317816_SNP [dm3] 2R_24430293_SNP [dm6]	G	T	2.248e^-4	0.888	SPLICE_SITE_REGION CG15873 INTRON CG15873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26048890	3R_26048890_SNP [dm3] 3R_30223168_SNP [dm6]	C	G	2.250e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	13824000	3R_13824000_SNP [dm3] 3R_17998278_SNP [dm6]	C	A	2.253e^-4	0.888	INTRON cpo	TF binding site mE1_TFBS_Trl
2L	12353687	2L_12353687_SNP [dm3] 2L_12353687_SNP [dm6]	T	A	2.254e^-4	0.888	INTRON bru-2
X	2244358	X_2244358_SNP [dm3] X_2350325_SNP [dm6]	T	A	2.255e^-4	0.888	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
3R	15622588	3R_15622588_SNP [dm3] 3R_19796866_SNP [dm6]	C	A	2.258e^-4	0.888	NON_SYNONYMOUS_CODING bnl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
3R	15630178	3R_15630178_SNP [dm3] 3R_19804456_SNP [dm6]	C	G	2.258e^-4	0.888	INTRON bnl	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15633266	3R_15633266_SNP [dm3] 3R_19807544_SNP [dm6]	G	T	2.258e^-4	0.888	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15633366	3R_15633366_SNP [dm3] 3R_19807644_SNP [dm6]	A	C	2.258e^-4	0.888	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	16204805	X_16204805_SNP [dm3] X_16310772_SNP [dm6]	T	C	2.258e^-4	0.888	SYNONYMOUS_CODING CG9915
3R	13484541	3R_13484541_SNP [dm3] 3R_17658819_SNP [dm6]	G	T	2.264e^-4	0.888	UPSTREAM tRNA:CR31575 INTRON CG14322
3R	13484561	3R_13484561_SNP [dm3] 3R_17658839_SNP [dm6]	G	T	2.264e^-4	0.888	UPSTREAM tRNA:CR31575 INTRON CG14322
3L	4387996	3L_4387996_SNP [dm3] 3L_4387996_SNP [dm6]	G	C	2.264e^-4	0.888	INTRON slow
3L	3123731	3L_3123731_SNP [dm3] 3L_3123731_SNP [dm6]	G	A	2.265e^-4	0.888	UPSTREAM prominin-like INTRON prominin-like
3R	22697466	3R_22697466_SNP [dm3] 3R_26871744_SNP [dm6]	T	C	2.270e^-4	0.888	DOWNSTREAM Rb97D INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9872206	2L_9872206_SNP [dm3] 2L_9872206_SNP [dm6]	C	T	2.285e^-4	0.888	INTRON nAChRalpha6
3L	995252	3L_995252_SNP [dm3] 3L_995252_SNP [dm6]	C	G	2.288e^-4	0.888	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
3L	16325944	3L_16325944_SNP [dm3] 3L_16332844_SNP [dm6]	C	T	2.309e^-4	0.888	UPSTREAM CG13056 DOWNSTREAM retinin INTERGENIC
3L	7097305	3L_7097305_SNP [dm3] 3L_7104205_SNP [dm6]	T	G	2.313e^-4	0.888	INTRON form3
3L	4387990	3L_4387990_SNP [dm3] 3L_4387990_SNP [dm6]	T	C	2.321e^-4	0.888	INTRON slow
3L	10170815	3L_10170815_SNP [dm3] 3L_10177715_SNP [dm6]	C	G	2.324e^-4	0.888	INTRON dpr10
3L	22482245	3L_22482245_SNP [dm3] 3L_22489145_SNP [dm6]	C	T	2.345e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14905100	3R_14905100_SNP [dm3] 3R_19079378_SNP [dm6]	G	A	2.348e^-4	0.888	INTRON cdi
X	13682731	X_13682731_INS [dm3] X_13788698_INS [dm6]	A	ATA	2.367e^-4	0.888	INTRON inaE
X	22225866	X_22225866_INS [dm3] X_22824030_INS [dm6]	C	CC	2.378e^-4	0.888	DOWNSTREAM fog INTERGENIC	transposable element FlyBase
2L	19610772	2L_19610772_SNP [dm3] 2L_19610772_SNP [dm6]	A	T	2.392e^-4	0.888	UTR_5_PRIME Lar UPSTREAM Lar INTRON Lar
X	12328493	X_12328493_SNP [dm3] X_12434460_SNP [dm6]	G	A	2.402e^-4	0.888	INTRON Pkcdelta
3L	18221480	3L_18221480_SNP [dm3] 3L_18228380_SNP [dm6]	T	A	2.411e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7469404	3L_7469404_DEL [dm3] 3L_7476304_DEL [dm6]	ACGT	A	2.420e^-4	0.888	DOWNSTREAM CG43292 INTERGENIC
3L	7469413	3L_7469413_DEL [dm3] 3L_7476313_DEL [dm6]	TTTCC	T	2.420e^-4	0.888	DOWNSTREAM CG43292 INTERGENIC
3R	13484536	3R_13484536_SNP [dm3] 3R_17658814_SNP [dm6]	G	A	2.441e^-4	0.888	UPSTREAM tRNA:CR31575 INTRON CG14322
3R	15625068	3R_15625068_SNP [dm3] 3R_19799346_SNP [dm6]	A	G	2.443e^-4	0.888	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12929394	X_12929394_SNP [dm3] X_13035361_SNP [dm6]	A	G	2.453e^-4	0.888	INTRON rad
2L	9985520	2L_9985520_SNP [dm3] 2L_9985520_SNP [dm6]	A	C	2.455e^-4	0.888	UPSTREAM CR13130 INTRON bib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1503942	2L_1503942_SNP [dm3] 2L_1503942_SNP [dm6]	C	T	2.457e^-4	0.888	EXON CR44064	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	17365266	X_17365266_SNP [dm3] X_17471233_SNP [dm6]	G	C	2.463e^-4	0.888	INTRON CG43658
2R	6956249	2R_6956249_SNP [dm3] 2R_11068744_SNP [dm6]	A	G	2.468e^-4	0.888	INTRON luna
3R	8516714	3R_8516714_SNP [dm3] 3R_12690992_SNP [dm6]	C	T	2.471e^-4	0.888	SYNONYMOUS_CODING Su_fu_ UPSTREAM Arp1 DOWNSTREAM CG31347	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2122808	2L_2122808_SNP [dm3] 2L_2122808_SNP [dm6]	C	T	2.487e^-4	0.888	INTERGENIC
3R	21086965	3R_21086965_SNP [dm3] 3R_25261243_SNP [dm6]	G	A	2.488e^-4	0.888	UTR_3_PRIME CG10425 DOWNSTREAM CG11857
3R	21088510	3R_21088510_SNP [dm3] 3R_25262788_SNP [dm6]	A	C	2.491e^-4	0.888	UTR_5_PRIME CG11858 UPSTREAM CG10425 DOWNSTREAM Aats-gln
3L	5357713	3L_5357713_SNP [dm3] 3L_5364613_SNP [dm6]	C	T	2.493e^-4	0.888	INTRON Uev1A	TF binding site mE1_TFBS_inv
3L	10169961	3L_10169961_SNP [dm3] 3L_10176861_SNP [dm6]	G	A	2.495e^-4	0.888	INTRON dpr10
X	4299422	X_4299422_SNP [dm3] X_4405389_SNP [dm6]	C	T	2.496e^-4	0.888	INTRON CR32773
3L	13128758	3L_13128758_SNP [dm3] 3L_13135658_SNP [dm6]	A	T	2.500e^-4	0.888	UPSTREAM CG33262 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19424073	3L_19424073_SNP [dm3] 3L_19430973_SNP [dm6]	G	T	2.514e^-4	0.888	INTERGENIC
3L	5273155	3L_5273155_SNP [dm3] 3L_5280055_SNP [dm6]	G	A	2.515e^-4	0.888	INTERGENIC
3L	7469395	3L_7469395_SNP [dm3] 3L_7476295_SNP [dm6]	A	C	2.520e^-4	0.888	DOWNSTREAM CG43292 INTERGENIC
3R	4422957	3R_4422957_SNP [dm3] 3R_8597235_SNP [dm6]	T	G	2.523e^-4	0.888	INTRON 5-HT2B
3R	22516097	3R_22516097_SNP [dm3] 3R_26690375_SNP [dm6]	C	G	2.524e^-4	0.888	INTERGENIC
X	20437623	X_20437623_DEL [dm3] X_20566596_DEL [dm6]	TGAGAAAT	T	2.529e^-4	0.888	UTR_3_PRIME RunxB
3L	13128699	3L_13128699_INS [dm3] 3L_13135599_INS [dm6]	T	TAGCA	2.535e^-4	0.888	UPSTREAM CG33262 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13128705	3L_13128705_INS [dm3] 3L_13135605_INS [dm6]	A	AGCATATAT	2.535e^-4	0.888	UPSTREAM CG33262 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20447539	X_20447539_SNP [dm3] X_20576512_SNP [dm6]	C	A	2.536e^-4	0.888	INTERGENIC	transposable element FlyBase
3L	22454713	3L_22454713_SNP [dm3] 3L_22461613_SNP [dm6]	G	A	2.538e^-4	0.888	UPSTREAM laza INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	5390306	X_5390306_SNP [dm3] X_5496273_SNP [dm6]	C	T	2.539e^-4	0.888	UPSTREAM frma INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
2R	4469290	2R_4469290_SNP [dm3] 2R_8581785_SNP [dm6]	A	G	2.547e^-4	0.888	SYNONYMOUS_CODING CG42326	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9812307	2L_9812307_SNP [dm3] 2L_9812307_SNP [dm6]	G	A	2.548e^-4	0.888	INTRON nAChRalpha6
X	12945005	X_12945005_SNP [dm3] X_13050972_SNP [dm6]	G	A	2.561e^-4	0.888	INTRON rad
2R	8533535	2R_8533535_SNP [dm3] 2R_12646030_SNP [dm6]	A	C	2.568e^-4	0.888	UPSTREAM CG8785 INTRON CG8785	TF binding site mE1_TFBS_cad
3R	960472	3R_960472_SNP [dm3] 3R_5134750_SNP [dm6]	C	A	2.577e^-4	0.888	INTERGENIC
3R	961745	3R_961745_SNP [dm3] 3R_5136023_SNP [dm6]	G	A	2.577e^-4	0.888	INTERGENIC
3R	965166	3R_965166_SNP [dm3] 3R_5139444_SNP [dm6]	G	A	2.577e^-4	0.888	UPSTREAM CG12589 INTERGENIC
3R	970282	3R_970282_SNP [dm3] 3R_5144560_SNP [dm6]	C	G	2.577e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	691628	X_691628_SNP [dm3] X_797595_SNP [dm6]	G	A	2.577e^-4	0.888	NON_SYNONYMOUS_CODING Rbf DOWNSTREAM CG16989	TF binding site BDTNP1_TFBS_dl
X	735674	X_735674_SNP [dm3] X_841641_SNP [dm6]	C	T	2.577e^-4	0.888	UPSTREAM CG43867 INTRON CG43867	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1627437	3L_1627437_SNP [dm3] 3L_1627437_SNP [dm6]	G	A	2.579e^-4	0.888	SYNONYMOUS_CODING CG13928 INTRON GC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12724475	3L_12724475_SNP [dm3] 3L_12731375_SNP [dm6]	G	A	2.581e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	976370	3R_976370_SNP [dm3] 3R_5150648_SNP [dm6]	A	T	2.583e^-4	0.888	UPSTREAM dpr16 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	978980	3R_978980_SNP [dm3] 3R_5153258_SNP [dm6]	A	G	2.583e^-4	0.888	INTRON dpr16
2R	16769995	2R_16769995_SNP [dm3] 2R_20882490_SNP [dm6]	C	G	2.585e^-4	0.888	UTR_3_PRIME Cib2
3R	25966415	3R_25966415_SNP [dm3] 3R_30140693_SNP [dm6]	A	T	2.590e^-4	0.888	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16245914	3L_16245914_SNP [dm3] 3L_16252814_SNP [dm6]	G	A	2.604e^-4	0.888	UPSTREAM CG13055 INTERGENIC
X	14235893	X_14235893_SNP [dm3] X_14341860_SNP [dm6]	A	G	2.608e^-4	0.888	INTRON dpr8
2R	5351364	2R_5351364_SNP [dm3] 2R_9463859_SNP [dm6]	A	G	2.629e^-4	0.888	UPSTREAM Camta INTRON Camta
2L	1838883	2L_1838883_SNP [dm3] 2L_1838883_SNP [dm6]	G	T	2.636e^-4	0.888	DOWNSTREAM CR44073 INTRON wry
2R	20525076	2R_20525076_SNP [dm3] 2R_24637553_SNP [dm6]	T	C	2.636e^-4	0.888	INTRON CG13594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15139970	3L_15139970_SNP [dm3] 3L_15146870_SNP [dm6]	A	T	2.648e^-4	0.888	UPSTREAM FucTA DOWNSTREAM Pex3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	961940	3R_961940_SNP [dm3] 3R_5136218_SNP [dm6]	T	A	2.656e^-4	0.888	DOWNSTREAM CG12589 INTERGENIC
3L	7143111	3L_7143111_SNP [dm3] 3L_7150011_SNP [dm6]	A	C	2.656e^-4	0.888	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	3644446	2L_3644446_SNP [dm3] 2L_3644446_SNP [dm6]	G	A	2.657e^-4	0.888	INTRON for
X	4375106	X_4375106_DEL [dm3] X_4481073_DEL [dm6]	AGAA	A	2.658e^-4	0.888	INTRON CR32773 & 1 other
3R	13484683	3R_13484683_SNP [dm3] 3R_17658961_SNP [dm6]	T	C	2.664e^-4	0.888	UPSTREAM tRNA:CR31575 INTRON CG14322
2L	16656844	2L_16656844_DEL [dm3] 2L_16656844_DEL [dm6]	ACTATAA	A	2.667e^-4	0.888	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
3R	14556016	3R_14556016_SNP [dm3] 3R_18730294_SNP [dm6]	G	A	2.669e^-4	0.888	INTRON Cha	TF binding site mE1_TFBS_chinmo
3R	22017992	3R_22017992_SNP [dm3] 3R_26192270_SNP [dm6]	C	A	2.688e^-4	0.888	INTERGENIC
3R	13484535	3R_13484535_SNP [dm3] 3R_17658813_SNP [dm6]	G	C	2.689e^-4	0.888	UPSTREAM tRNA:CR31575 INTRON CG14322
3R	967634	3R_967634_SNP [dm3] 3R_5141912_SNP [dm6]	A	T	2.692e^-4	0.888	INTERGENIC
3R	967690	3R_967690_SNP [dm3] 3R_5141968_SNP [dm6]	A	G	2.692e^-4	0.888	INTERGENIC
X	14506901	X_14506901_SNP [dm3] X_14612868_SNP [dm6]	C	T	2.702e^-4	0.888	INTRON NetA
3R	20845280	3R_20845280_SNP [dm3] 3R_25019558_SNP [dm6]	T	G	2.702e^-4	0.888	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_HSA
2R	9717501	2R_9717501_SNP [dm3] 2R_13829996_SNP [dm6]	C	T	2.702e^-4	0.888	INTRON CG6329	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9319550	2R_9319550_SNP [dm3] 2R_13432045_SNP [dm6]	T	G	2.703e^-4	0.888	UPSTREAM tRNA:I:49Fe & 2 others DOWNSTREAM tRNA:I:49Fb & 2 others INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_inv
3R	17224420	3R_17224420_SNP [dm3] 3R_21398698_SNP [dm6]	G	A	2.703e^-4	0.888	SYNONYMOUS_CODING CG6475	TF binding site mE1_TFBS_sens
3R	2936941	3R_2936941_DEL [dm3] 3R_7111219_DEL [dm6]	TATATT	T	2.705e^-4	0.888	INTRON Alh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12738152	3L_12738152_SNP [dm3] 3L_12745052_SNP [dm6]	T	C	2.707e^-4	0.888	UTR_3_PRIME CG32112 UPSTREAM CG32109
X	9217752	X_9217752_SNP [dm3] X_9323719_SNP [dm6]	G	A	2.715e^-4	0.888	SPLICE_SITE_REGION c12.2 DOWNSTREAM CG34449 INTRON c12.2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1608007	3L_1608007_SNP [dm3] 3L_1608007_SNP [dm6]	C	T	2.721e^-4	0.888	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	17491923	3R_17491923_SNP [dm3] 3R_21666201_SNP [dm6]	A	T	2.733e^-4	0.888	DOWNSTREAM DNApol-alpha180 INTRON CG15497	TF binding site BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7704545	3R_7704545_SNP [dm3] 3R_11878823_SNP [dm6]	T	C	2.741e^-4	0.888	SYNONYMOUS_CODING sad DOWNSTREAM CG6962	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17662121	2L_17662121_SNP [dm3] 2L_17662121_SNP [dm6]	A	G	2.746e^-4	0.888	SYNONYMOUS_CODING CadN
2L	2122793	2L_2122793_SNP [dm3] 2L_2122793_SNP [dm6]	T	G	2.746e^-4	0.888	INTERGENIC
3L	9194648	3L_9194648_SNP [dm3] 3L_9201548_SNP [dm6]	T	A	2.752e^-4	0.888	INTERGENIC
X	3005498	X_3005498_SNP [dm3] X_3111465_SNP [dm6]	A	G	2.753e^-4	0.888	INTRON kirre
X	690362	X_690362_INS [dm3] X_796329_INS [dm6]	A	AA	2.757e^-4	0.888	UTR_3_PRIME CG16989 DOWNSTREAM Rbf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
3L	7741976	3L_7741976_SNP [dm3] 3L_7748876_SNP [dm6]	C	G	2.758e^-4	0.888	UTR_3_PRIME CG13685 INTRON CG32373
2R	9696127	2R_9696127_SNP [dm3] 2R_13808622_SNP [dm6]	C	A	2.759e^-4	0.888	INTRON stj
X	16435281	X_16435281_SNP [dm3] X_16541248_SNP [dm6]	C	T	2.759e^-4	0.888	UPSTREAM CG9903 DOWNSTREAM CG9902 INTERGENIC
3R	965769	3R_965769_SNP [dm3] 3R_5140047_SNP [dm6]	C	A	2.774e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_cad
X	16373000	X_16373000_SNP [dm3] X_16478967_SNP [dm6]	C	T	2.781e^-4	0.888	INTRON para	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26213826	3R_26213826_SNP [dm3] 3R_30388104_SNP [dm6]	T	A	2.782e^-4	0.888	START_GAINED Fer1HCH UTR_5_PRIME Fer1HCH UPSTREAM Fer2LCH & 1 other INTRON Fer2LCH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	25438393	3R_25438393_SNP [dm3] 3R_29612671_SNP [dm6]	G	A	2.790e^-4	0.888	INTRON alph
2L	16234394	2L_16234394_SNP [dm3] 2L_16234394_SNP [dm6]	G	C	2.796e^-4	0.888	INTRON CG42817	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	4260017	2L_4260017_SNP [dm3] 2L_4260017_SNP [dm6]	A	G	2.801e^-4	0.888	EXON CR44080
3R	14883999	3R_14883999_INS [dm3] 3R_19058277_INS [dm6]	C	CAGTCATTC	2.815e^-4	0.888	INTRON cdi	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22018077	3R_22018077_SNP [dm3] 3R_26192355_SNP [dm6]	A	T	2.816e^-4	0.888	INTERGENIC
X	12401841	X_12401841_SNP [dm3] X_12507808_SNP [dm6]	A	T	2.821e^-4	0.888	INTRON CG2556	TF binding site BDTNP1_TFBS_da
X	712780	X_712780_SNP [dm3] X_818747_SNP [dm6]	G	A	2.823e^-4	0.888	NON_SYNONYMOUS_CODING CG43867	TF binding site mE1_TFBS_HSA
2R	6090413	2R_6090413_SNP [dm3] 2R_10202908_SNP [dm6]	A	G	2.831e^-4	0.888	INTERGENIC
X	3082913	X_3082913_DEL [dm3] X_3188880_DEL [dm6]	TT	T	2.831e^-4	0.888	INTRON dnc	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	3435540	3L_3435540_SNP [dm3] 3L_3435540_SNP [dm6]	A	G	2.834e^-4	0.888	INTRON eIF5B	TF binding site BDTNP1_TFBS_twi
2L	12111459	2L_12111459_SNP [dm3] 2L_12111459_SNP [dm6]	C	T	2.843e^-4	0.888	SYNONYMOUS_CODING Phae2 DOWNSTREAM Phae1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3210105	3R_3210105_SNP [dm3] 3R_7384383_SNP [dm6]	A	G	2.856e^-4	0.888	INTERGENIC
3L	5937715	3L_5937715_SNP [dm3] 3L_5944615_SNP [dm6]	A	T	2.858e^-4	0.888	INTRON CG33993
2L	15606467	2L_15606467_SNP [dm3] 2L_15606467_SNP [dm6]	T	A	2.868e^-4	0.888	INTERGENIC
X	590349	X_590349_SNP [dm3] X_696316_SNP [dm6]	G	A	2.868e^-4	0.888	INTRON sdk	TF binding site BDTNP1_TFBS_dl
3R	967755	3R_967755_SNP [dm3] 3R_5142033_SNP [dm6]	T	A	2.876e^-4	0.888	INTERGENIC
X	19173461	X_19173461_SNP [dm3] X_19279428_SNP [dm6]	T	A	2.887e^-4	0.888	NON_SYNONYMOUS_CODING CG8028	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5183379	X_5183379_SNP [dm3] X_5289346_SNP [dm6]	T	G	2.889e^-4	0.888	INTERGENIC
3L	14884369	3L_14884369_SNP [dm3] 3L_14891269_SNP [dm6]	C	T	2.890e^-4	0.888	UPSTREAM CR45398 INTERGENIC
3R	15206798	3R_15206798_SNP [dm3] 3R_19381076_SNP [dm6]	G	A	2.890e^-4	0.888	INTRON Ino80
2L	1504236	2L_1504236_SNP [dm3] 2L_1504236_SNP [dm6]	A	G	2.898e^-4	0.888	DOWNSTREAM CR44064 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl
3L	7469385	3L_7469385_DEL [dm3] 3L_7476285_DEL [dm6]	ATT	A	2.902e^-4	0.888	DOWNSTREAM CG43292 INTERGENIC
2L	16108639	2L_16108639_INS [dm3] 2L_16108639_INS [dm6]	T	TA	2.905e^-4	0.888	INTERGENIC
3L	15866913	3L_15866913_SNP [dm3] 3L_15873813_SNP [dm6]	T	C	2.909e^-4	0.888	INTRON pHCl
X	4298535	X_4298535_SNP [dm3] X_4404502_SNP [dm6]	C	A	2.911e^-4	0.888	INTRON CR32773
2L	16239290	2L_16239290_SNP [dm3] 2L_16239290_SNP [dm6]	T	C	2.914e^-4	0.888	SYNONYMOUS_CODING CG42817
3L	14828172	3L_14828172_SNP [dm3] 3L_14835072_SNP [dm6]	C	T	2.915e^-4	0.888	INTRON CG17839
3L	12752156	3L_12752156_SNP [dm3] 3L_12759056_SNP [dm6]	C	G	2.921e^-4	0.888	INTRON CG32113
3R	17531383	3R_17531383_SNP [dm3] 3R_21705661_SNP [dm6]	T	C	2.928e^-4	0.888	INTRON CG31176
3L	4109894	3L_4109894_SNP [dm3] 3L_4109894_SNP [dm6]	G	C	2.936e^-4	0.888	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5948108	X_5948108_INS [dm3] X_6054075_INS [dm6]	A	AA	2.940e^-4	0.888	INTRON CG5921	TF binding site mE1_TFBS_chinmo
X	9462851	X_9462851_SNP [dm3] X_9568818_SNP [dm6]	A	G	2.945e^-4	0.888	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18072999	X_18072999_SNP [dm3] X_18178966_SNP [dm6]	A	G	2.945e^-4	0.888	SYNONYMOUS_CODING Andorra INTRON Frq2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11484936	3R_11484936_SNP [dm3] 3R_15659214_SNP [dm6]	T	A	2.957e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14828362	3L_14828362_SNP [dm3] 3L_14835262_SNP [dm6]	G	T	2.958e^-4	0.888	INTRON CG17839
3R	22243828	3R_22243828_SNP [dm3] 3R_26418106_SNP [dm6]	G	A	2.964e^-4	0.888	INTERGENIC
3R	18481933	3R_18481933_SNP [dm3] 3R_22656211_SNP [dm6]	T	C	2.967e^-4	0.888	INTRON CG45058
3L	22487323	3L_22487323_SNP [dm3] 3L_22494223_SNP [dm6]	G	A	2.967e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12294501	2R_12294501_SNP [dm3] 2R_16406996_SNP [dm6]	C	T	2.970e^-4	0.888	INTRON Sema-2b
X	14507129	X_14507129_SNP [dm3] X_14613096_SNP [dm6]	T	A	2.972e^-4	0.888	INTRON NetA
3L	7469437	3L_7469437_SNP [dm3] 3L_7476337_SNP [dm6]	A	G	2.982e^-4	0.888	DOWNSTREAM CG43292 INTERGENIC
3R	22018040	3R_22018040_SNP [dm3] 3R_26192318_SNP [dm6]	T	C	2.987e^-4	0.888	INTERGENIC
2R	18531108	2R_18531108_SNP [dm3] 2R_22643603_SNP [dm6]	C	T	2.990e^-4	0.888	SYNONYMOUS_CODING Ugt58Fa	TF binding site mE1_TFBS_sens
3L	7469391	3L_7469391_SNP [dm3] 3L_7476291_SNP [dm6]	T	C	2.991e^-4	0.888	DOWNSTREAM CG43292 INTERGENIC
2R	17577260	2R_17577260_SNP [dm3] 2R_21689755_SNP [dm6]	T	C	2.994e^-4	0.888	NON_SYNONYMOUS_CODING CG10307 DOWNSTREAM Tim10 & 1 other	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	18163210	2R_18163210_SNP [dm3] 2R_22275705_SNP [dm6]	C	G	2.997e^-4	0.888	INTRON dve	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12384697	3L_12384697_INS [dm3] 3L_12391597_INS [dm6]	A	ATA	2.997e^-4	0.888	UPSTREAM Ncc69 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14690877	3L_14690877_SNP [dm3] 3L_14697777_SNP [dm6]	G	T	3.005e^-4	0.888	NON_SYNONYMOUS_CODING CG17177 UPSTREAM CG13474 INTRON ome
2R	13618756	2R_13618756_SNP [dm3] 2R_17731251_SNP [dm6]	A	T	3.008e^-4	0.888	SYNONYMOUS_CODING CG4984 UTR_3_PRIME CG4975	TF binding site mE1_TFBS_cad
X	1642238	X_1642238_SNP [dm3] X_1748205_SNP [dm6]	G	A	3.019e^-4	0.888	SYNONYMOUS_CODING Scgdelta	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9773585	2L_9773585_SNP [dm3] 2L_9773585_SNP [dm6]	C	A	3.021e^-4	0.888	UPSTREAM ppk16 INTRON ppk11
X	21495270	X_21495270_SNP [dm3] X_21624243_SNP [dm6]	G	A	3.023e^-4	0.888	UPSTREAM CG32500 DOWNSTREAM DIP1 INTERGENIC	transposable element FlyBase
3L	5274548	3L_5274548_SNP [dm3] 3L_5281448_SNP [dm6]	G	A	3.027e^-4	0.888	INTERGENIC
3R	22018148	3R_22018148_SNP [dm3] 3R_26192426_SNP [dm6]	C	A	3.028e^-4	0.888	INTERGENIC
3L	12751636	3L_12751636_SNP [dm3] 3L_12758536_SNP [dm6]	A	T	3.034e^-4	0.888	INTRON CG32113	TF binding site mE1_TFBS_inv
2R	18158317	2R_18158317_SNP [dm3] 2R_22270812_SNP [dm6]	A	T	3.044e^-4	0.888	UPSTREAM dve INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	11535794	2R_11535794_SNP [dm3] 2R_15648289_SNP [dm6]	T	A	3.044e^-4	0.888	INTRON CG42524
3R	25966419	3R_25966419_DEL [dm3] 3R_30140697_DEL [dm6]	CG	C	3.061e^-4	0.888	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6237956	3R_6237956_SNP [dm3] 3R_10412234_SNP [dm6]	A	T	3.062e^-4	0.888	INTRON Irp-1B
3L	7096002	3L_7096002_SNP [dm3] 3L_7102902_SNP [dm6]	G	C	3.068e^-4	0.888	INTRON form3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4387951	3L_4387951_SNP [dm3] 3L_4387951_SNP [dm6]	C	T	3.069e^-4	0.888	INTRON slow
2L	4185797	2L_4185797_SNP [dm3] 2L_4185797_SNP [dm6]	C	A	3.069e^-4	0.888	DOWNSTREAM CG31961 INTRON CR44057	TF binding site BDTNP1_TFBS_twi
3L	11360356	3L_11360356_SNP [dm3] 3L_11367256_SNP [dm6]	C	G	3.086e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2686118	X_2686118_SNP [dm3] X_2792085_SNP [dm6]	T	A	3.091e^-4	0.888	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	9319593	2R_9319593_SNP [dm3] 2R_13432088_SNP [dm6]	A	C	3.097e^-4	0.888	UPSTREAM tRNA:I:49Fe & 2 others DOWNSTREAM tRNA:I:49Fc & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu
2R	17349450	2R_17349450_SNP [dm3] 2R_21461945_SNP [dm6]	G	T	3.099e^-4	0.888	INTRON Sdc	TF binding site BDTNP1_TFBS_twi
2L	4342333	2L_4342333_SNP [dm3] 2L_4342333_SNP [dm6]	T	A	3.100e^-4	0.888	INTRON Atet	TF binding site mE1_TFBS_HSA
3L	13128702	3L_13128702_SNP [dm3] 3L_13135602_SNP [dm6]	A	T	3.104e^-4	0.888	UPSTREAM CG33262 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22482401	3L_22482401_SNP [dm3] 3L_22489301_SNP [dm6]	T	A	3.107e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6917679	3R_6917679_SNP [dm3] 3R_11091957_SNP [dm6]	A	T	3.110e^-4	0.888	INTERGENIC
3L	12750606	3L_12750606_SNP [dm3] 3L_12757506_SNP [dm6]	C	T	3.112e^-4	0.888	SPLICE_SITE_REGION CG32113 INTRON CG32113
X	4299427	X_4299427_SNP [dm3] X_4405394_SNP [dm6]	G	C	3.115e^-4	0.888	INTRON CR32773
2L	4185795	2L_4185795_SNP [dm3] 2L_4185795_SNP [dm6]	A	T	3.116e^-4	0.888	DOWNSTREAM CG31961 INTRON CR44057	TF binding site BDTNP1_TFBS_twi
3R	6237916	3R_6237916_SNP [dm3] 3R_10412194_SNP [dm6]	G	A	3.117e^-4	0.888	INTRON Irp-1B
3L	13147061	3L_13147061_SNP [dm3] 3L_13153961_SNP [dm6]	A	G	3.118e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3R	20623599	3R_20623599_SNP [dm3] 3R_24797877_SNP [dm6]	G	A	3.119e^-4	0.888	UTR_3_PRIME Ets96B & 1 other
X	4046213	X_4046213_SNP [dm3] X_4152180_SNP [dm6]	C	T	3.124e^-4	0.888	INTRON Fas2
2L	6517142	2L_6517142_SNP [dm3] 2L_6517142_SNP [dm6]	T	C	3.125e^-4	0.888	INTRON CG31637
X	14160222	X_14160222_SNP [dm3] X_14266189_SNP [dm6]	A	T	3.127e^-4	0.888	UTR_5_PRIME CG13404 UPSTREAM na DOWNSTREAM CG1461	TF binding site mE1_TFBS_chinmo
3R	15206533	3R_15206533_SNP [dm3] 3R_19380811_SNP [dm6]	A	G	3.134e^-4	0.888	INTRON Ino80
3R	17490982	3R_17490982_DEL [dm3] 3R_21665260_DEL [dm6]	TT	T	3.139e^-4	0.888	INTRON CG15497	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	14176899	3L_14176899_SNP [dm3] 3L_14183799_SNP [dm6]	G	A	3.144e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_cad
3R	22415585	3R_22415585_SNP [dm3] 3R_26589863_SNP [dm6]	G	T	3.147e^-4	0.888	INTRON scrib
2R	7692255	2R_7692255_SNP [dm3] 2R_11804750_SNP [dm6]	G	T	3.147e^-4	0.888	INTRON ths
2L	18403218	2L_18403218_SNP [dm3] 2L_18403218_SNP [dm6]	G	A	3.152e^-4	0.888	UPSTREAM CR44487 INTERGENIC
3L	12750501	3L_12750501_SNP [dm3] 3L_12757401_SNP [dm6]	G	A	3.154e^-4	0.888	NON_SYNONYMOUS_CODING CG32113
2L	13274360	2L_13274360_SNP [dm3] 2L_13274360_SNP [dm6]	C	T	3.161e^-4	0.888	SYNONYMOUS_CODING CG44085
2L	12113842	2L_12113842_INS [dm3] 2L_12113842_INS [dm6]	T	TGAT	3.162e^-4	0.888	UPSTREAM CG17211 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	12750374	3L_12750374_SNP [dm3] 3L_12757274_SNP [dm6]	T	C	3.164e^-4	0.888	SYNONYMOUS_CODING CG32113
3R	14650372	3R_14650372_SNP [dm3] 3R_18824650_SNP [dm6]	C	A	3.165e^-4	0.888	INTRON CG18208
3R	10315159	3R_10315159_SNP [dm3] 3R_14489437_SNP [dm6]	C	T	3.169e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2882792	3L_2882792_SNP [dm3] 3L_2882792_SNP [dm6]	G	T	3.171e^-4	0.888	UPSTREAM CR44531 DOWNSTREAM spz5 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	12401844	X_12401844_MNP [dm3] X_12507811_MNP [dm6]	CAG	ATA	3.175e^-4	0.888	INTRON CG2556	TF binding site BDTNP1_TFBS_da
3L	16383316	3L_16383316_DEL [dm3] 3L_16390216_DEL [dm6]	TGCATTTTTTTAAATTGTTT...	T	3.185e^-4	0.888	DOWNSTREAM CG44836 INTRON RAF2
2R	8948645	2R_8948645_SNP [dm3] 2R_13061140_SNP [dm6]	G	A	3.192e^-4	0.888	INTRON Drl-2
X	9421097	X_9421097_SNP [dm3] X_9527064_SNP [dm6]	C	A	3.203e^-4	0.888	INTRON CG32700
2R	5477529	2R_5477529_SNP [dm3] 2R_9590024_SNP [dm6]	C	T	3.208e^-4	0.888	SYNONYMOUS_CODING CG1827 UPSTREAM Map60 INTRON clos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4271385	2L_4271385_DEL [dm3] 2L_4271385_DEL [dm6]	CC	C	3.212e^-4	0.888	INTERGENIC
3L	4387902	3L_4387902_DEL [dm3] 3L_4387902_DEL [dm6]	ATA	A	3.214e^-4	0.888	INTRON slow
2L	9763076	2L_9763076_SNP [dm3] 2L_9763076_SNP [dm6]	C	T	3.235e^-4	0.888	SYNONYMOUS_CODING Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	6974827	3L_6974827_SNP [dm3] 3L_6981727_SNP [dm6]	T	G	3.236e^-4	0.888	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10668459	3L_10668459_SNP [dm3] 3L_10675359_SNP [dm6]	T	C	3.237e^-4	0.888	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9098101	2L_9098101_SNP [dm3] 2L_9098101_SNP [dm6]	A	C	3.244e^-4	0.888	UTR_3_PRIME CG31609
3R	15207166	3R_15207166_SNP [dm3] 3R_19381444_SNP [dm6]	T	G	3.248e^-4	0.888	INTRON Ino80
3L	8679180	3L_8679180_SNP [dm3] 3L_8686080_SNP [dm6]	T	C	3.253e^-4	0.888	INTERGENIC
2R	6625095	2R_6625095_SNP [dm3] 2R_10737590_SNP [dm6]	T	C	3.281e^-4	0.888	UTR_3_PRIME CG7220 DOWNSTREAM CG7220	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19937007	2R_19937007_SNP [dm3] 2R_24049484_SNP [dm6]	A	T	3.291e^-4	0.888	SYNONYMOUS_CODING sei UPSTREAM gammaSnap1	TF binding site BDTNP1_TFBS_dl
2R	7431753	2R_7431753_DEL [dm3] 2R_11544248_DEL [dm6]	AGTAAGGAAAAACAAGTGAG...	A	3.293e^-4	0.888	INTERGENIC
X	6547391	X_6547391_SNP [dm3] X_6653358_SNP [dm6]	G	A	3.302e^-4	0.888	SYNONYMOUS_CODING CG3226 DOWNSTREAM pigs
3L	7143106	3L_7143106_SNP [dm3] 3L_7150006_SNP [dm6]	A	G	3.302e^-4	0.888	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	12655465	2L_12655465_SNP [dm3] 2L_12655465_SNP [dm6]	A	C	3.304e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13309632	2L_13309632_SNP [dm3] 2L_13309632_SNP [dm6]	T	A	3.305e^-4	0.888	SPLICE_SITE_REGION CG43778 INTRON CG43778	TF binding site mE1_TFBS_chinmo
X	997574	X_997574_SNP [dm3] X_1103541_SNP [dm6]	A	G	3.312e^-4	0.888	INTRON CG3655
3R	7925711	3R_7925711_SNP [dm3] 3R_12099989_SNP [dm6]	G	A	3.314e^-4	0.888	INTRON dpr17	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1536039	2L_1536039_SNP [dm3] 2L_1536039_SNP [dm6]	A	G	3.342e^-4	0.888	INTERGENIC
2R	15422545	2R_15422545_SNP [dm3] 2R_19535040_SNP [dm6]	A	C	3.346e^-4	0.888	INTRON sm	TF binding site BDTNP1_TFBS_twi
3L	5155846	3L_5155846_INS [dm3] 3L_5162746_INS [dm6]	G	GAAG	3.347e^-4	0.888	INTRON shep
2L	3226165	2L_3226165_SNP [dm3] 2L_3226165_SNP [dm6]	G	A	3.348e^-4	0.888	INTERGENIC
3R	25984849	3R_25984849_DEL [dm3] 3R_30159127_DEL [dm6]	TT	T	3.350e^-4	0.888	INTRON CG11498
3L	12751991	3L_12751991_SNP [dm3] 3L_12758891_SNP [dm6]	T	A	3.362e^-4	0.888	INTRON CG32113
3L	12650662	3L_12650662_SNP [dm3] 3L_12657562_SNP [dm6]	T	A	3.367e^-4	0.888	INTERGENIC
3L	7441815	3L_7441815_SNP [dm3] 3L_7448715_SNP [dm6]	T	A	3.372e^-4	0.888	INTRON CG42458
X	861234	X_861234_SNP [dm3] X_967201_SNP [dm6]	G	T	3.374e^-4	0.888	INTERGENIC
3R	8122960	3R_8122960_SNP [dm3] 3R_12297238_SNP [dm6]	G	T	3.374e^-4	0.888	INTRON svp	TF binding site mE1_TFBS_cad
3R	8122965	3R_8122965_SNP [dm3] 3R_12297243_SNP [dm6]	T	C	3.374e^-4	0.888	INTRON svp	TF binding site mE1_TFBS_cad
3R	8122966	3R_8122966_SNP [dm3] 3R_12297244_SNP [dm6]	G	A	3.374e^-4	0.888	INTRON svp	TF binding site mE1_TFBS_cad
2L	1755224	2L_1755224_DEL [dm3] 2L_1755224_DEL [dm6]	TT	T	3.375e^-4	0.888	DOWNSTREAM Gr22f INTERGENIC
3R	8027961	3R_8027961_SNP [dm3] 3R_12202239_SNP [dm6]	G	T	3.381e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_inv
X	14160785	X_14160785_SNP [dm3] X_14266752_SNP [dm6]	G	A	3.384e^-4	0.888	UPSTREAM CG13404 INTRON na
3R	13573067	3R_13573067_SNP [dm3] 3R_17747345_SNP [dm6]	A	G	3.387e^-4	0.888	UTR_3_PRIME TyrRII
3L	7198857	3L_7198857_SNP [dm3] 3L_7205757_SNP [dm6]	G	A	3.388e^-4	0.888	INTERGENIC
X	1177783	X_1177783_SNP [dm3] X_1283750_SNP [dm6]	T	A	3.396e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14078566	2L_14078566_SNP [dm3] 2L_14078566_SNP [dm6]	A	T	3.410e^-4	0.888	INTRON nAChRalpha5
3L	1898094	3L_1898094_SNP [dm3] 3L_1898094_SNP [dm6]	T	G	3.418e^-4	0.888	UPSTREAM CG1887 INTRON CG1887
X	10329701	X_10329701_DEL [dm3] X_10435668_DEL [dm6]	TGCCAATT	G	3.420e^-4	0.888	INTRON CG32683
2L	7988264	2L_7988264_SNP [dm3] 2L_7988264_SNP [dm6]	T	C	3.421e^-4	0.888	SYNONYMOUS_CODING pes	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6316054	3L_6316054_SNP [dm3] 3L_6322954_SNP [dm6]	C	T	3.423e^-4	0.888	DOWNSTREAM Or65a INTERGENIC
2L	8996755	2L_8996755_SNP [dm3] 2L_8996755_SNP [dm6]	G	T	3.423e^-4	0.888	SYNONYMOUS_CODING alien UPSTREAM CG18661	TF binding site BDTNP1_TFBS_dl
3R	22028838	3R_22028838_SNP [dm3] 3R_26203116_SNP [dm6]	A	T	3.424e^-4	0.888	INTRON CR44320
3L	16245932	3L_16245932_SNP [dm3] 3L_16252832_SNP [dm6]	C	A	3.432e^-4	0.888	UPSTREAM CG13055 INTERGENIC
2L	10048705	2L_10048705_INS [dm3] 2L_10048705_INS [dm6]	T	TGTATT	3.441e^-4	0.888	UPSTREAM CG33301 INTERGENIC
3R	15617014	3R_15617014_SNP [dm3] 3R_19791292_SNP [dm6]	C	T	3.456e^-4	0.888	DOWNSTREAM tRNA:CR31215 INTERGENIC
2R	6994889	2R_6994889_SNP [dm3] 2R_11107384_SNP [dm6]	G	T	3.467e^-4	0.888	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	17023367	3R_17023367_DEL [dm3] 3R_21197645_DEL [dm6]	CC	C	3.474e^-4	0.888	INTRON SNF4Agamma
2R	6873529	2R_6873529_SNP [dm3] 2R_10986024_SNP [dm6]	C	T	3.478e^-4	0.888	INTRON luna
X	17365753	X_17365753_INS [dm3] X_17471720_INS [dm6]	A	AAAATA	3.478e^-4	0.888	INTRON CG43658
2L	1646576	2L_1646576_SNP [dm3] 2L_1646576_SNP [dm6]	G	A	3.493e^-4	0.888	DOWNSTREAM CR45695 INTERGENIC
3L	12603030	3L_12603030_SNP [dm3] 3L_12609930_SNP [dm6]	A	G	3.500e^-4	0.888	UTR_5_PRIME caup	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12737178	3L_12737178_SNP [dm3] 3L_12744078_SNP [dm6]	G	T	3.516e^-4	0.888	SYNONYMOUS_CODING CG32112
3L	2624709	3L_2624709_SNP [dm3] 3L_2624709_SNP [dm6]	A	G	3.516e^-4	0.888	INTRON Pxn
3L	14346393	3L_14346393_INS [dm3] 3L_14353293_INS [dm6]	T	TT	3.526e^-4	0.888	INTRON fz
2L	9762947	2L_9762947_SNP [dm3] 2L_9762947_SNP [dm6]	C	T	3.537e^-4	0.888	SYNONYMOUS_CODING Taf11 UPSTREAM und DOWNSTREAM zf30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	5446313	3R_5446313_SNP [dm3] 3R_9620591_SNP [dm6]	G	A	3.540e^-4	0.888	INTRON CG8312
2R	5477502	2R_5477502_SNP [dm3] 2R_9589997_SNP [dm6]	G	T	3.545e^-4	0.888	SYNONYMOUS_CODING CG1827 UPSTREAM Map60 INTRON clos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14815785	3L_14815785_SNP [dm3] 3L_14822685_SNP [dm6]	G	T	3.545e^-4	0.888	INTRON CG17839
2R	4482292	2R_4482292_DEL [dm3] 2R_8594787_DEL [dm6]	GTTAAAG	G	3.546e^-4	0.888	INTRON CG8736	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11365585	3L_11365585_SNP [dm3] 3L_11372485_SNP [dm6]	C	T	3.557e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	11353872	3L_11353872_DEL [dm3] 3L_11360772_DEL [dm6]	AACTTATATA	A	3.562e^-4	0.888	INTERGENIC
3R	10199038	3R_10199038_SNP [dm3] 3R_14373316_SNP [dm6]	T	A	3.571e^-4	0.888	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	21888971	3R_21888971_DEL [dm3] 3R_26063249_DEL [dm6]	TACACTGACACCTGGGTATA...	T	3.577e^-4	0.888	UPSTREAM CG14551 INTERGENIC
3R	21889073	3R_21889073_SNP [dm3] 3R_26063351_SNP [dm6]	C	G	3.577e^-4	0.888	UPSTREAM CG14551 INTERGENIC
2L	16329097	2L_16329097_SNP [dm3] 2L_16329097_SNP [dm6]	G	C	3.580e^-4	0.888	UTR_5_PRIME mRpL4 UPSTREAM CG4440 DOWNSTREAM CG4278	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21892804	3R_21892804_SNP [dm3] 3R_26067082_SNP [dm6]	C	T	3.580e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	8982444	2R_8982444_SNP [dm3] 2R_13094939_SNP [dm6]	C	T	3.584e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26036448	3R_26036448_SNP [dm3] 3R_30210726_SNP [dm6]	C	T	3.595e^-4	0.888	UPSTREAM CecA1 & 1 other DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
3R	15091270	3R_15091270_SNP [dm3] 3R_19265548_SNP [dm6]	C	T	3.599e^-4	0.888	INTERGENIC
X	6470202	X_6470202_INS [dm3] X_6576169_INS [dm6]	T	TTCTTCGAAAAT...	3.600e^-4	0.888	INTRON CG34417
2R	10281365	2R_10281365_SNP [dm3] 2R_14393860_SNP [dm6]	C	G	3.601e^-4	0.888	INTERGENIC
X	6708237	X_6708237_SNP [dm3] X_6814204_SNP [dm6]	A	C	3.604e^-4	0.888	SYNONYMOUS_CODING iav DOWNSTREAM pod1
2L	1503569	2L_1503569_SNP [dm3] 2L_1503569_SNP [dm6]	G	C	3.605e^-4	0.888	SPLICE_SITE_ACCEPTOR CR44064 UPSTREAM CG7420 INTRON CR44064	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10048715	2L_10048715_SNP [dm3] 2L_10048715_SNP [dm6]	T	G	3.610e^-4	0.888	UPSTREAM CG33301 INTERGENIC
3L	1520606	3L_1520606_SNP [dm3] 3L_1520606_SNP [dm6]	C	G	3.611e^-4	0.888	SYNONYMOUS_CODING Psa	TF binding site mE1_TFBS_cad
2L	17744598	2L_17744598_SNP [dm3] 2L_17744598_SNP [dm6]	C	T	3.615e^-4	0.888	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	14524113	2L_14524113_SNP [dm3] 2L_14524113_SNP [dm6]	T	C	3.619e^-4	0.888	UPSTREAM CG33648 INTERGENIC
3L	16482947	3L_16482947_SNP [dm3] 3L_16489847_SNP [dm6]	G	A	3.623e^-4	0.888	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	19509588	3L_19509588_SNP [dm3] 3L_19516488_SNP [dm6]	G	A	3.628e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	17966905	2R_17966905_SNP [dm3] 2R_22079400_SNP [dm6]	A	T	3.631e^-4	0.888	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC
3L	16483131	3L_16483131_SNP [dm3] 3L_16490031_SNP [dm6]	C	A	3.631e^-4	0.888	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	16483138	3L_16483138_SNP [dm3] 3L_16490038_SNP [dm6]	T	G	3.631e^-4	0.888	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	15150931	3R_15150931_SNP [dm3] 3R_19325209_SNP [dm6]	G	A	3.636e^-4	0.888	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14663140	2R_14663140_SNP [dm3] 2R_18775635_SNP [dm6]	T	G	3.638e^-4	0.888	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	14184132	3R_14184132_SNP [dm3] 3R_18358410_SNP [dm6]	A	C	3.639e^-4	0.888	INTRON CG15803
3L	8486171	3L_8486171_DEL [dm3] 3L_8493071_DEL [dm6]	AA	A	3.647e^-4	0.888	INTRON CG43163	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2217834	3L_2217834_SNP [dm3] 3L_2217834_SNP [dm6]	G	T	3.651e^-4	0.888	INTERGENIC
X	2448680	X_2448680_SNP [dm3] X_2554647_SNP [dm6]	T	A	3.652e^-4	0.888	INTRON Pdfr
3R	15206565	3R_15206565_SNP [dm3] 3R_19380843_SNP [dm6]	G	A	3.655e^-4	0.888	INTRON Ino80
3R	13572267	3R_13572267_SNP [dm3] 3R_17746545_SNP [dm6]	T	A	3.655e^-4	0.888	UTR_3_PRIME TyrRII DOWNSTREAM TyrRII
3L	2882791	3L_2882791_SNP [dm3] 3L_2882791_SNP [dm6]	T	G	3.658e^-4	0.888	UPSTREAM CR44531 DOWNSTREAM spz5 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	17220809	X_17220809_SNP [dm3] X_17326776_SNP [dm6]	A	T	3.675e^-4	0.888	INTERGENIC
3R	8523772	3R_8523772_SNP [dm3] 3R_12698050_SNP [dm6]	C	T	3.675e^-4	0.888	UTR_5_PRIME Past1 DOWNSTREAM NijC INTRON Past1	TF binding site BDTNP1_TFBS_dl
2L	8215546	2L_8215546_SNP [dm3] 2L_8215546_SNP [dm6]	A	G	3.679e^-4	0.888	UPSTREAM CG8349 DOWNSTREAM CG8353 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25966378	3R_25966378_SNP [dm3] 3R_30140656_SNP [dm6]	G	A	3.680e^-4	0.888	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25966410	3R_25966410_SNP [dm3] 3R_30140688_SNP [dm6]	T	A	3.680e^-4	0.888	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3590867	2R_3590867_SNP [dm3] 2R_7703362_SNP [dm6]	T	A	3.683e^-4	0.888	UTR_3_PRIME CG30493 DOWNSTREAM CG34216
X	4768557	X_4768557_SNP [dm3] X_4874524_SNP [dm6]	C	T	3.684e^-4	0.888	UPSTREAM CR43495 INTRON CG42594
3L	7469394	3L_7469394_SNP [dm3] 3L_7476294_SNP [dm6]	T	A	3.691e^-4	0.888	DOWNSTREAM CG43292 INTERGENIC
3L	7469397	3L_7469397_MNP [dm3] 3L_7476297_MNP [dm6]	ATA	TAG	3.691e^-4	0.888	DOWNSTREAM CG43292 INTERGENIC
3R	25519156	3R_25519156_SNP [dm3] 3R_29693434_SNP [dm6]	T	A	3.697e^-4	0.888	SYNONYMOUS_CODING dmrt99B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	7007181	X_7007181_SNP [dm3] X_7113148_SNP [dm6]	C	A	3.706e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14160315	X_14160315_SNP [dm3] X_14266282_SNP [dm6]	G	A	3.708e^-4	0.888	UPSTREAM na & 1 other DOWNSTREAM CG1461 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	22568272	3L_22568272_SNP [dm3] 3L_22575172_SNP [dm6]	T	G	3.709e^-4	0.888	INTERGENIC
3L	14690544	3L_14690544_SNP [dm3] 3L_14697444_SNP [dm6]	G	T	3.712e^-4	0.888	NON_SYNONYMOUS_CODING CG17177 UPSTREAM CG13474 INTRON ome
X	14321272	X_14321272_SNP [dm3] X_14427239_SNP [dm6]	T	C	3.718e^-4	0.888	INTRON dpr8
2L	5444754	2L_5444754_SNP [dm3] 2L_5444754_SNP [dm6]	A	G	3.722e^-4	0.888	INTERGENIC
3R	2963563	3R_2963563_SNP [dm3] 3R_7137841_SNP [dm6]	T	C	3.722e^-4	0.888	INTRON Fer1	TF binding site BDTNP1_TFBS_prd
3R	22018070	3R_22018070_SNP [dm3] 3R_26192348_SNP [dm6]	C	G	3.726e^-4	0.888	INTERGENIC
3L	1080608	3L_1080608_INS [dm3] 3L_1080608_INS [dm6]	C	CT	3.729e^-4	0.888	INTRON bab1	TF binding site mE1_TFBS_chinmo
X	14760035	X_14760035_SNP [dm3] X_14866002_SNP [dm6]	A	G	3.730e^-4	0.888	UTR_5_PRIME CG9518 INTRON Flo2
3R	21888956	3R_21888956_SNP [dm3] 3R_26063234_SNP [dm6]	G	A	3.732e^-4	0.888	UPSTREAM CG14551 INTERGENIC
3L	9593790	3L_9593790_SNP [dm3] 3L_9600690_SNP [dm6]	G	A	3.734e^-4	0.888	SYNONYMOUS_CODING CG3088 UPSTREAM CG3306 DOWNSTREAM CG3222
2R	11976373	2R_11976373_SNP [dm3] 2R_16088868_SNP [dm6]	A	G	3.743e^-4	0.888	INTRON Dg
X	16114060	X_16114060_SNP [dm3] X_16220027_SNP [dm6]	G	A	3.773e^-4	0.888	INTERGENIC
3L	1059203	3L_1059203_SNP [dm3] 3L_1059203_SNP [dm6]	T	C	3.775e^-4	0.888	INTRON bab1
X	15525852	X_15525852_SNP [dm3] X_15631819_SNP [dm6]	G	A	3.776e^-4	0.888	INTRON sog	TF binding site BDTNP1_TFBS_dl
2L	843045	2L_843045_SNP [dm3] 2L_843045_SNP [dm6]	C	A	3.779e^-4	0.888	UPSTREAM drongo INTRON drongo
3R	25966551	3R_25966551_SNP [dm3] 3R_30140829_SNP [dm6]	T	C	3.784e^-4	0.888	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16435259	X_16435259_SNP [dm3] X_16541226_SNP [dm6]	G	T	3.785e^-4	0.888	UPSTREAM CG9903 DOWNSTREAM CG9902 INTERGENIC
2R	18133423	2R_18133423_DEL [dm3] 2R_22245918_DEL [dm6]	TT	T	3.790e^-4	0.888	INTRON dve
3L	11922645	3L_11922645_SNP [dm3] 3L_11929545_SNP [dm6]	T	C	3.797e^-4	0.888	INTRON CG44837 & 1 other
3L	16325938	3L_16325938_SNP [dm3] 3L_16332838_SNP [dm6]	C	A	3.799e^-4	0.888	UPSTREAM CG13056 DOWNSTREAM retinin INTERGENIC
X	19173459	X_19173459_SNP [dm3] X_19279426_SNP [dm6]	A	G	3.803e^-4	0.888	SYNONYMOUS_CODING CG8028	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25377293	3R_25377293_SNP [dm3] 3R_29551571_SNP [dm6]	C	A	3.812e^-4	0.888	INTERGENIC
3R	17929158	3R_17929158_SNP [dm3] 3R_22103436_SNP [dm6]	A	G	3.813e^-4	0.888	NON_SYNONYMOUS_CODING CG13407 INTRON CG5778
3R	19761066	3R_19761066_SNP [dm3] 3R_23935344_SNP [dm6]	T	C	3.813e^-4	0.888	DOWNSTREAM Gdh INTRON CG5854	TF binding site mE1_TFBS_sens
X	20422073	X_20422073_SNP [dm3] X_20551046_SNP [dm6]	C	T	3.816e^-4	0.888	INTRON RunxB
2L	12113831	2L_12113831_SNP [dm3] 2L_12113831_SNP [dm6]	C	T	3.824e^-4	0.888	UPSTREAM CG17211 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	10891900	2L_10891900_SNP [dm3] 2L_10891900_SNP [dm6]	C	T	3.830e^-4	0.888	INTERGENIC
2R	16386859	2R_16386859_DEL [dm3] 2R_20499354_DEL [dm6]	GG	G	3.833e^-4	0.888	INTERGENIC
3R	23916676	3R_23916676_SNP [dm3] 3R_28090954_SNP [dm6]	A	G	3.836e^-4	0.888	DOWNSTREAM CG34362 INTERGENIC
3L	1623240	3L_1623240_SNP [dm3] 3L_1623240_SNP [dm6]	T	C	3.836e^-4	0.888	UTR_3_PRIME ABCB7 & 1 other DOWNSTREAM ABCB7	TF binding site mE1_TFBS_cad
3L	4387456	3L_4387456_DEL [dm3] 3L_4387456_DEL [dm6]	GAAA	CC	3.837e^-4	0.888	INTRON slow
3R	14075844	3R_14075844_SNP [dm3] 3R_18250122_SNP [dm6]	T	C	3.845e^-4	0.888	UTR_3_PRIME 14-3-3epsilon UPSTREAM CG18598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14183871	3R_14183871_SNP [dm3] 3R_18358149_SNP [dm6]	C	A	3.854e^-4	0.888	INTRON CG15803
2L	8122164	2L_8122164_SNP [dm3] 2L_8122164_SNP [dm6]	A	G	3.859e^-4	0.888	SYNONYMOUS_CODING mon2	TF binding site mE1_TFBS_cad
3L	4387932	3L_4387932_SNP [dm3] 3L_4387932_SNP [dm6]	C	T	3.866e^-4	0.888	INTRON slow
2L	1755232	2L_1755232_SNP [dm3] 2L_1755232_SNP [dm6]	T	C	3.868e^-4	0.888	DOWNSTREAM Gr22f INTERGENIC
3L	1921258	3L_1921258_SNP [dm3] 3L_1921258_SNP [dm6]	C	T	3.869e^-4	0.888	UPSTREAM Dbx INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22156898	3R_22156898_SNP [dm3] 3R_26331176_SNP [dm6]	G	T	3.881e^-4	0.888	INTRON CG33970
X	8812881	X_8812881_INS [dm3] X_8918848_INS [dm6]	T	TGTCTTTTTCCGCTT...	3.883e^-4	0.888	DOWNSTREAM CR44111 INTRON rdgA
2R	7431821	2R_7431821_SNP [dm3] 2R_11544316_SNP [dm6]	G	A	3.887e^-4	0.888	INTERGENIC
3L	4387851	3L_4387851_SNP [dm3] 3L_4387851_SNP [dm6]	G	A	3.891e^-4	0.888	INTRON slow
2L	10957951	2L_10957951_SNP [dm3] 2L_10957951_SNP [dm6]	A	T	3.893e^-4	0.888	INTRON dpr2	TF binding site BDTNP1_TFBS_twi
3R	23151340	3R_23151340_SNP [dm3] 3R_27325618_SNP [dm6]	C	T	3.895e^-4	0.888	INTERGENIC
3L	7085038	3L_7085038_SNP [dm3] 3L_7091938_SNP [dm6]	C	T	3.896e^-4	0.888	INTERGENIC
3R	4422761	3R_4422761_SNP [dm3] 3R_8597039_SNP [dm6]	G	C	3.903e^-4	0.888	INTRON 5-HT2B
3L	7469410	3L_7469410_SNP [dm3] 3L_7476310_SNP [dm6]	T	G	3.912e^-4	0.888	DOWNSTREAM CG43292 INTERGENIC
2L	18550506	2L_18550506_SNP [dm3] 2L_18550506_SNP [dm6]	C	T	3.929e^-4	0.888	INTRON Pde11
2L	5975449	2L_5975449_SNP [dm3] 2L_5975449_SNP [dm6]	G	A	3.933e^-4	0.888	INTRON chic	TF binding site BDTNP1_TFBS_z
X	4764639	X_4764639_SNP [dm3] X_4870606_SNP [dm6]	G	T	3.934e^-4	0.888	INTRON CG42594
X	1696592	X_1696592_SNP [dm3] X_1802559_SNP [dm6]	C	A	3.937e^-4	0.888	INTRON CG42666	TF binding site mE1_TFBS_chinmo
X	16664247	X_16664247_SNP [dm3] X_16770214_SNP [dm6]	A	T	3.939e^-4	0.888	INTRON if
X	4871577	X_4871577_SNP [dm3] X_4977544_SNP [dm6]	C	A	3.945e^-4	0.888	INTRON CR44833
3L	7337863	3L_7337863_SNP [dm3] 3L_7344763_SNP [dm6]	C	A	3.948e^-4	0.888	UPSTREAM CG8596 DOWNSTREAM CG14834 INTRON CG8596	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14803567	3L_14803567_SNP [dm3] 3L_14810467_SNP [dm6]	G	A	3.952e^-4	0.888	INTRON CG17839
2R	19854388	2R_19854388_SNP [dm3] 2R_23966865_SNP [dm6]	T	C	3.952e^-4	0.888	DOWNSTREAM CG34213 & 1 other INTERGENIC
X	20437645	X_20437645_SNP [dm3] X_20566618_SNP [dm6]	T	G	3.970e^-4	0.888	UTR_3_PRIME RunxB
3L	18326193	3L_18326193_SNP [dm3] 3L_18333093_SNP [dm6]	A	G	3.974e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	1898089	3L_1898089_DEL [dm3] 3L_1898089_DEL [dm6]	TT	T	3.976e^-4	0.888	UPSTREAM CG1887 INTRON CG1887
3L	9325207	3L_9325207_SNP [dm3] 3L_9332107_SNP [dm6]	G	C	3.978e^-4	0.888	INTERGENIC
3L	11221435	3L_11221435_SNP [dm3] 3L_11228335_SNP [dm6]	C	A	3.980e^-4	0.888	UTR_3_PRIME CG42671 INTRON CG42671	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	8123219	3R_8123219_SNP [dm3] 3R_12297497_SNP [dm6]	T	A	3.982e^-4	0.888	INTRON svp	TF binding site mE1_TFBS_cad
3R	8123221	3R_8123221_SNP [dm3] 3R_12297499_SNP [dm6]	C	A	3.982e^-4	0.888	INTRON svp	TF binding site mE1_TFBS_cad
X	7007190	X_7007190_SNP [dm3] X_7113157_SNP [dm6]	T	G	3.993e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17572890	X_17572890_DEL [dm3] X_17678857_DEL [dm6]	TCCCTTTGAAAAGTTGGCTT...	T	4.008e^-4	0.888	INTRON chas
2R	17790134	2R_17790134_SNP [dm3] 2R_21902629_SNP [dm6]	C	T	4.011e^-4	0.888	INTRON Fili
3L	22485745	3L_22485745_SNP [dm3] 3L_22492645_SNP [dm6]	A	G	4.013e^-4	0.888	INTERGENIC
3R	18215268	3R_18215268_SNP [dm3] 3R_22389546_SNP [dm6]	A	C	4.014e^-4	0.888	UPSTREAM CG7059 INTRON CG5379	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	3404392	X_3404392_SNP [dm3] X_3510359_SNP [dm6]	A	T	4.024e^-4	0.888	UTR_3_PRIME CG32791 DOWNSTREAM CG32791 INTRON CR44999
2R	13533209	2R_13533209_SNP [dm3] 2R_17645704_SNP [dm6]	T	C	4.028e^-4	0.888	INTERGENIC
3R	13979807	3R_13979807_SNP [dm3] 3R_18154085_SNP [dm6]	T	C	4.030e^-4	0.888	DOWNSTREAM CG14316 INTERGENIC
3L	14855873	3L_14855873_SNP [dm3] 3L_14862773_SNP [dm6]	A	T	4.042e^-4	0.888	INTRON CG17839	TF binding site mE1_TFBS_inv
X	4263431	X_4263431_SNP [dm3] X_4369398_SNP [dm6]	T	C	4.044e^-4	0.888	UPSTREAM mir-983-1 & 2 others INTRON CR43614 & 1 other
3L	10634430	3L_10634430_SNP [dm3] 3L_10641330_SNP [dm6]	C	T	4.045e^-4	0.888	SYNONYMOUS_CODING CG32066 UPSTREAM CG14154
2R	13661101	2R_13661101_SNP [dm3] 2R_17773596_SNP [dm6]	A	G	4.055e^-4	0.888	DOWNSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_HSA
3R	5427655	3R_5427655_SNP [dm3] 3R_9601933_SNP [dm6]	C	T	4.059e^-4	0.888	INTRON CG8312
X	1624839	X_1624839_SNP [dm3] X_1730806_SNP [dm6]	T	C	4.060e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	18550425	2L_18550425_SNP [dm3] 2L_18550425_SNP [dm6]	T	G	4.084e^-4	0.888	INTRON Pde11
2R	9370964	2R_9370964_SNP [dm3] 2R_13483459_SNP [dm6]	A	C	4.089e^-4	0.888	UPSTREAM arr DOWNSTREAM cbc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20093050	2R_20093050_SNP [dm3] 2R_24205527_SNP [dm6]	G	A	4.102e^-4	0.888	UTR_3_PRIME CG11406 INTRON CG11406
3R	15103393	3R_15103393_SNP [dm3] 3R_19277671_SNP [dm6]	A	T	4.106e^-4	0.888	INTERGENIC
2R	10561832	2R_10561832_SNP [dm3] 2R_14674327_SNP [dm6]	T	C	4.108e^-4	0.888	DOWNSTREAM CG30479 & 1 other INTRON mspo
X	8887626	X_8887626_SNP [dm3] X_8993593_SNP [dm6]	G	T	4.112e^-4	0.888	UPSTREAM mir-31b INTRON rdgA & 1 other
X	1728023	X_1728023_SNP [dm3] X_1833990_SNP [dm6]	T	A	4.130e^-4	0.888	INTRON CG42666
3R	9336088	3R_9336088_SNP [dm3] 3R_13510366_SNP [dm6]	C	T	4.136e^-4	0.888	INTERGENIC
3R	26037551	3R_26037551_SNP [dm3] 3R_30211829_SNP [dm6]	C	A	4.142e^-4	0.888	UPSTREAM CecA2 DOWNSTREAM CecA1 & 1 other INTERGENIC
3R	2347115	3R_2347115_SNP [dm3] 3R_6521393_SNP [dm6]	C	A	4.145e^-4	0.888	INTERGENIC
2R	8430881	2R_8430881_INS [dm3] 2R_12543376_INS [dm6]	C	CC	4.146e^-4	0.888	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	10081966	X_10081966_SNP [dm3] X_10187933_SNP [dm6]	C	T	4.155e^-4	0.888	INTRON CR44894 & 1 other
3R	15203116	3R_15203116_SNP [dm3] 3R_19377394_SNP [dm6]	A	T	4.160e^-4	0.888	UPSTREAM CG31245 INTRON Ino80
3L	7469421	3L_7469421_SNP [dm3] 3L_7476321_SNP [dm6]	C	A	4.162e^-4	0.888	DOWNSTREAM CG43292 INTERGENIC
X	848910	X_848910_SNP [dm3] X_954877_SNP [dm6]	C	T	4.166e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15646560	3R_15646560_SNP [dm3] 3R_19820838_SNP [dm6]	A	C	4.166e^-4	0.888	INTRON bnl	TF binding site mE1_TFBS_chinmo
3L	7297859	3L_7297859_SNP [dm3] 3L_7304759_SNP [dm6]	T	A	4.181e^-4	0.888	INTRON unc-13-4A
3L	18376208	3L_18376208_SNP [dm3] 3L_18383108_SNP [dm6]	T	A	4.182e^-4	0.888	INTERGENIC
3L	4358161	3L_4358161_SNP [dm3] 3L_4358161_SNP [dm6]	T	A	4.183e^-4	0.888	INTRON Cip4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2882780	3L_2882780_SNP [dm3] 3L_2882780_SNP [dm6]	T	A	4.194e^-4	0.888	UPSTREAM CR44531 DOWNSTREAM spz5 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	17716627	X_17716627_SNP [dm3] X_17822594_SNP [dm6]	T	G	4.194e^-4	0.888	INTRON Socs16D	TF binding site mE1_TFBS_cad
3L	7445891	3L_7445891_SNP [dm3] 3L_7452791_SNP [dm6]	C	T	4.194e^-4	0.888	DOWNSTREAM CG33278 INTRON CG42458	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1515836	2L_1515836_SNP [dm3] 2L_1515836_SNP [dm6]	T	A	4.196e^-4	0.888	DOWNSTREAM CG18132 INTERGENIC
3L	7737811	3L_7737811_SNP [dm3] 3L_7744711_SNP [dm6]	C	T	4.198e^-4	0.888	INTRON CG32373
2R	9406464	2R_9406464_SNP [dm3] 2R_13518959_SNP [dm6]	A	G	4.210e^-4	0.888	INTRON Vmat	TF binding site mE1_TFBS_cad
3L	16126872	3L_16126872_SNP [dm3] 3L_16133772_SNP [dm6]	C	T	4.212e^-4	0.888	NON_SYNONYMOUS_CODING CG16838	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8299645	2R_8299645_SNP [dm3] 2R_12412140_SNP [dm6]	A	G	4.216e^-4	0.888	DOWNSTREAM CG33627 INTERGENIC
3L	22482015	3L_22482015_SNP [dm3] 3L_22488915_SNP [dm6]	T	C	4.223e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18368389	3L_18368389_SNP [dm3] 3L_18375289_SNP [dm6]	T	C	4.243e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1042907	3L_1042907_SNP [dm3] 3L_1042907_SNP [dm6]	G	T	4.244e^-4	0.888	INTRON bab1
3R	26239185	3R_26239185_SNP [dm3] 3R_30413463_SNP [dm6]	C	G	4.251e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22697439	3R_22697439_SNP [dm3] 3R_26871717_SNP [dm6]	A	G	4.255e^-4	0.888	DOWNSTREAM Rb97D INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17373115	3L_17373115_SNP [dm3] 3L_17380015_SNP [dm6]	T	G	4.257e^-4	0.888	UPSTREAM Cad74A DOWNSTREAM CG13728 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12357375	X_12357375_SNP [dm3] X_12463342_SNP [dm6]	T	C	4.257e^-4	0.888	UPSTREAM CG42258 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15091887	3L_15091887_SNP [dm3] 3L_15098787_SNP [dm6]	T	C	4.258e^-4	0.888	SPLICE_SITE_REGION CR43973 INTRON CTPsyn EXON CR43973	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	15896564	3L_15896564_INS [dm3] 3L_15903464_INS [dm6]	A	AA	4.269e^-4	0.888	INTRON sff
2L	16795487	2L_16795487_SNP [dm3] 2L_16795487_SNP [dm6]	G	A	4.270e^-4	0.888	NON_SYNONYMOUS_CODING Ugt36Ba
3R	15403970	3R_15403970_DEL [dm3] 3R_19578248_DEL [dm6]	TT	T	4.271e^-4	0.888	INTRON Dys
3R	21088516	3R_21088516_SNP [dm3] 3R_25262794_SNP [dm6]	A	G	4.272e^-4	0.888	UTR_5_PRIME CG11858 UPSTREAM CG10425 DOWNSTREAM Aats-gln
2R	14413605	2R_14413605_SNP [dm3] 2R_18526100_SNP [dm6]	A	C	4.275e^-4	0.888	UTR_3_PRIME CG43066 DOWNSTREAM CG43066
3R	22372378	3R_22372378_SNP [dm3] 3R_26546656_SNP [dm6]	T	C	4.277e^-4	0.888	INTRON scrib	TF binding site BDTNP1_TFBS_da
2R	9319595	2R_9319595_SNP [dm3] 2R_13432090_SNP [dm6]	C	T	4.282e^-4	0.888	UPSTREAM tRNA:I:49Fe & 2 others DOWNSTREAM tRNA:I:49Fc & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu
3L	6317986	3L_6317986_SNP [dm3] 3L_6324886_SNP [dm6]	G	C	4.286e^-4	0.888	UPSTREAM Or65b INTERGENIC
3L	3427732	3L_3427732_SNP [dm3] 3L_3427732_SNP [dm6]	A	T	4.293e^-4	0.888	DOWNSTREAM eIF5B INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	5301341	X_5301341_SNP [dm3] X_5407308_SNP [dm6]	G	A	4.299e^-4	0.888	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi
2L	3790778	2L_3790778_SNP [dm3] 2L_3790778_SNP [dm6]	T	C	4.303e^-4	0.888	NON_SYNONYMOUS_CODING CG3921
3R	22018057	3R_22018057_SNP [dm3] 3R_26192335_SNP [dm6]	A	G	4.311e^-4	0.888	INTERGENIC
X	857380	X_857380_SNP [dm3] X_963347_SNP [dm6]	G	A	4.319e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8486174	3L_8486174_SNP [dm3] 3L_8493074_SNP [dm6]	C	G	4.320e^-4	0.888	INTRON CG43163	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	22488317	3L_22488317_SNP [dm3] 3L_22495217_SNP [dm6]	C	A	4.321e^-4	0.888	INTERGENIC
X	9386971	X_9386971_INS [dm3] X_9492938_INS [dm6]	C	CC	4.324e^-4	0.888	INTRON mgl
2R	9543102	2R_9543102_SNP [dm3] 2R_13655597_SNP [dm6]	G	A	4.324e^-4	0.888	INTRON fas	TF binding site mE1_TFBS_chinmo
X	2477618	X_2477618_SNP [dm3] X_2583585_SNP [dm6]	C	G	4.331e^-4	0.888	SYNONYMOUS_CODING CG13759 DOWNSTREAM CG13760	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16301485	3R_16301485_SNP [dm3] 3R_20475763_SNP [dm6]	T	A	4.331e^-4	0.888	INTRON Gfrl
3L	12750461	3L_12750461_SNP [dm3] 3L_12757361_SNP [dm6]	C	T	4.333e^-4	0.888	SYNONYMOUS_CODING CG32113
X	14670101	X_14670101_SNP [dm3] X_14776068_SNP [dm6]	T	C	4.346e^-4	0.888	UTR_3_PRIME CG5334 UPSTREAM CG5347
3R	7333212	3R_7333212_DEL [dm3] 3R_11507490_DEL [dm6]	AA	A	4.349e^-4	0.888	INTERGENIC
3L	15011771	3L_15011771_SNP [dm3] 3L_15018671_SNP [dm6]	A	G	4.358e^-4	0.888	INTRON Sytbeta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15011785	3L_15011785_SNP [dm3] 3L_15018685_SNP [dm6]	C	T	4.358e^-4	0.888	SPLICE_SITE_REGION Sytbeta INTRON Sytbeta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1623259	3L_1623259_SNP [dm3] 3L_1623259_SNP [dm6]	T	C	4.365e^-4	0.888	UTR_3_PRIME ABCB7 & 1 other DOWNSTREAM ABCB7	TF binding site mE1_TFBS_cad
2L	12141285	2L_12141285_SNP [dm3] 2L_12141285_SNP [dm6]	G	T	4.370e^-4	0.888	DOWNSTREAM Gr33a INTERGENIC
2R	19082322	2R_19082322_SNP [dm3] 2R_23194799_SNP [dm6]	G	C	4.371e^-4	0.888	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9773578	2L_9773578_SNP [dm3] 2L_9773578_SNP [dm6]	T	C	4.380e^-4	0.888	UPSTREAM ppk16 INTRON ppk11
3L	1073149	3L_1073149_SNP [dm3] 3L_1073149_SNP [dm6]	A	T	4.382e^-4	0.888	INTRON bab1
3R	18905728	3R_18905728_SNP [dm3] 3R_23080006_SNP [dm6]	G	T	4.382e^-4	0.888	INTRON CG13830
X	2688233	X_2688233_SNP [dm3] X_2794200_SNP [dm6]	A	T	4.387e^-4	0.888	INTRON kirre & 1 other	regulatory region REDfly_CRMs
3L	3123766	3L_3123766_SNP [dm3] 3L_3123766_SNP [dm6]	T	C	4.390e^-4	0.888	UPSTREAM prominin-like INTRON prominin-like
3L	7431461	3L_7431461_SNP [dm3] 3L_7438361_SNP [dm6]	A	G	4.405e^-4	0.888	UPSTREAM CG14835 DOWNSTREAM sphinx1 INTRON CG42458
2L	5129449	2L_5129449_SNP [dm3] 2L_5129449_SNP [dm6]	T	C	4.409e^-4	0.888	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6336262	2R_6336262_SNP [dm3] 2R_10448757_SNP [dm6]	A	G	4.416e^-4	0.888	DOWNSTREAM Cyp49a1 INTRON Galphao
3L	16245929	3L_16245929_SNP [dm3] 3L_16252829_SNP [dm6]	C	T	4.418e^-4	0.888	UPSTREAM CG13055 INTERGENIC
X	18183370	X_18183370_SNP [dm3] X_18289337_SNP [dm6]	G	T	4.423e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3L	18326371	3L_18326371_SNP [dm3] 3L_18333271_SNP [dm6]	C	T	4.436e^-4	0.888	INTERGENIC
3L	2602134	3L_2602134_SNP [dm3] 3L_2602134_SNP [dm6]	A	G	4.439e^-4	0.888	SYNONYMOUS_CODING Pxn DOWNSTREAM CG16986	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	19710698	2R_19710698_SNP [dm3] 2R_23823175_SNP [dm6]	T	A	4.439e^-4	0.888	DOWNSTREAM CG4763 INTRON CG5549	TF binding site mE1_TFBS_chinmo
2R	12294643	2R_12294643_SNP [dm3] 2R_16407138_SNP [dm6]	C	A	4.448e^-4	0.888	INTRON Sema-2b
3L	17488707	3L_17488707_SNP [dm3] 3L_17495607_SNP [dm6]	G	T	4.452e^-4	0.888	DOWNSTREAM edin INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	4185705	2L_4185705_SNP [dm3] 2L_4185705_SNP [dm6]	C	T	4.453e^-4	0.888	DOWNSTREAM CG31961 INTRON CR44057
X	853624	X_853624_SNP [dm3] X_959591_SNP [dm6]	G	C	4.455e^-4	0.888	INTERGENIC
3L	11899078	3L_11899078_SNP [dm3] 3L_11905978_SNP [dm6]	A	C	4.458e^-4	0.888	INTRON CG44837
3L	7095884	3L_7095884_SNP [dm3] 3L_7102784_SNP [dm6]	C	T	4.462e^-4	0.888	INTRON form3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10782042	X_10782042_SNP [dm3] X_10888009_SNP [dm6]	A	T	4.463e^-4	0.888	INTRON Ork1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10451733	2L_10451733_SNP [dm3] 2L_10451733_SNP [dm6]	T	A	4.470e^-4	0.888	DOWNSTREAM CG5322 INTRON ppk10
3R	18392601	3R_18392601_SNP [dm3] 3R_22566879_SNP [dm6]	T	C	4.473e^-4	0.888	INTERGENIC
3L	22484885	3L_22484885_SNP [dm3] 3L_22491785_SNP [dm6]	A	G	4.475e^-4	0.888	INTERGENIC
3L	2217993	3L_2217993_SNP [dm3] 3L_2217993_SNP [dm6]	C	T	4.478e^-4	0.888	INTERGENIC
3L	16533621	3L_16533621_SNP [dm3] 3L_16540521_SNP [dm6]	T	C	4.481e^-4	0.888	INTRON CG43373
3L	22484212	3L_22484212_SNP [dm3] 3L_22491112_SNP [dm6]	A	G	4.483e^-4	0.888	INTERGENIC
2R	13879570	2R_13879570_SNP [dm3] 2R_17992065_SNP [dm6]	T	C	4.491e^-4	0.888	INTRON dpr13	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8704793	2L_8704793_SNP [dm3] 2L_8704793_SNP [dm6]	G	T	4.504e^-4	0.888	UPSTREAM CG9314 INTRON Hnf4 EXON CR44992
X	14760033	X_14760033_SNP [dm3] X_14866000_SNP [dm6]	C	G	4.507e^-4	0.888	UTR_5_PRIME CG9518 INTRON Flo2
3L	819301	3L_819301_SNP [dm3] 3L_819301_SNP [dm6]	A	C	4.508e^-4	0.888	INTERGENIC
X	12328628	X_12328628_SNP [dm3] X_12434595_SNP [dm6]	A	T	4.511e^-4	0.888	INTRON Pkcdelta
3R	12967289	3R_12967289_SNP [dm3] 3R_17141567_SNP [dm6]	G	A	4.515e^-4	0.888	SYNONYMOUS_CODING TwdlW DOWNSTREAM CG5265	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12873320	X_12873320_SNP [dm3] X_12979287_SNP [dm6]	C	T	4.518e^-4	0.888	INTERGENIC
3L	8778005	3L_8778005_SNP [dm3] 3L_8784905_SNP [dm6]	C	G	4.519e^-4	0.888	INTRON Fhos	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	8778010	3L_8778010_DEL [dm3] 3L_8784910_DEL [dm6]	ATG	A	4.519e^-4	0.888	INTRON Fhos	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	8778015	3L_8778015_SNP [dm3] 3L_8784915_SNP [dm6]	T	A	4.519e^-4	0.888	INTRON Fhos	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	18409622	3L_18409622_SNP [dm3] 3L_18416522_SNP [dm6]	T	A	4.522e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9768045	3L_9768045_SNP [dm3] 3L_9774945_SNP [dm6]	T	C	4.524e^-4	0.888	INTRON CG8177
2R	17578088	2R_17578088_SNP [dm3] 2R_21690583_SNP [dm6]	G	A	4.536e^-4	0.888	UPSTREAM CG42496 & 1 other DOWNSTREAM CG10307 INTRON Tim10 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9319277	2R_9319277_SNP [dm3] 2R_13431772_SNP [dm6]	T	C	4.538e^-4	0.888	UPSTREAM tRNA:I:49Fd & 3 others DOWNSTREAM tRNA:I:49Fb & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	12357635	X_12357635_SNP [dm3] X_12463602_SNP [dm6]	C	T	4.539e^-4	0.888	UTR_5_PRIME CG42258 UPSTREAM Rab40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19397370	2R_19397370_SNP [dm3] 2R_23509847_SNP [dm6]	T	C	4.542e^-4	0.888	INTERGENIC
2R	15422150	2R_15422150_SNP [dm3] 2R_19534645_SNP [dm6]	C	G	4.543e^-4	0.888	INTRON sm
2L	15585502	2L_15585502_SNP [dm3] 2L_15585502_SNP [dm6]	C	A	4.543e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15585762	2L_15585762_SNP [dm3] 2L_15585762_SNP [dm6]	T	A	4.543e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15650202	2L_15650202_SNP [dm3] 2L_15650202_SNP [dm6]	A	T	4.543e^-4	0.888	SYNONYMOUS_CODING CG4587	TF binding site mE1_TFBS_inv
2L	19651230	2L_19651230_SNP [dm3] 2L_19651230_SNP [dm6]	G	T	4.544e^-4	0.888	INTRON Lar	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	2497995	3R_2497995_SNP [dm3] 3R_6672273_SNP [dm6]	T	G	4.545e^-4	0.888	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
2R	8566514	2R_8566514_SNP [dm3] 2R_12679009_SNP [dm6]	C	T	4.550e^-4	0.888	DOWNSTREAM CG8771 INTRON CG42708
2R	10662001	2R_10662001_SNP [dm3] 2R_14774496_SNP [dm6]	G	T	4.550e^-4	0.888	UTR_3_PRIME kn INTRON kn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18479828	2L_18479828_SNP [dm3] 2L_18479828_SNP [dm6]	A	C	4.558e^-4	0.888	INTRON CG10283	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10097946	3L_10097946_SNP [dm3] 3L_10104846_SNP [dm6]	G	T	4.565e^-4	0.888	INTRON dpr6
X	9174868	X_9174868_SNP [dm3] X_9280835_SNP [dm6]	T	C	4.565e^-4	0.888	SYNONYMOUS_CODING c11.1	TF binding site mE1_TFBS_sens
3L	7469419	3L_7469419_SNP [dm3] 3L_7476319_SNP [dm6]	C	A	4.568e^-4	0.888	DOWNSTREAM CG43292 INTERGENIC
3R	6218596	3R_6218596_SNP [dm3] 3R_10392874_SNP [dm6]	T	C	4.576e^-4	0.888	INTRON cwo
3L	12735704	3L_12735704_SNP [dm3] 3L_12742604_SNP [dm6]	A	G	4.582e^-4	0.888	UTR_5_PRIME CG32112 INTRON CG32112
2R	18923325	2R_18923325_SNP [dm3] 2R_23035802_SNP [dm6]	A	G	4.584e^-4	0.888	INTRON twi & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	4501478	2R_4501478_SNP [dm3] 2R_8613973_SNP [dm6]	G	C	4.597e^-4	0.888	NON_SYNONYMOUS_CODING CG8642 UPSTREAM Cirl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	25994906	3R_25994906_SNP [dm3] 3R_30169184_SNP [dm6]	T	C	4.600e^-4	0.888	SYNONYMOUS_CODING CG31028
2L	6244151	2L_6244151_SNP [dm3] 2L_6244151_SNP [dm6]	A	C	4.607e^-4	0.888	INTERGENIC
3R	26036741	3R_26036741_SNP [dm3] 3R_30211019_SNP [dm6]	G	C	4.609e^-4	0.888	SYNONYMOUS_CODING CecA1 UPSTREAM Cec-Psi1 DOWNSTREAM Anp
X	1177053	X_1177053_SNP [dm3] X_1283020_SNP [dm6]	G	A	4.611e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	737784	X_737784_SNP [dm3] X_843751_SNP [dm6]	C	T	4.621e^-4	0.888	INTRON CG43867	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	5864684	X_5864684_SNP [dm3] X_5970651_SNP [dm6]	A	C	4.627e^-4	0.888	INTRON Grip
3R	14032507	3R_14032507_SNP [dm3] 3R_18206785_SNP [dm6]	C	T	4.629e^-4	0.888	INTRON CG7985
2L	12656514	2L_12656514_SNP [dm3] 2L_12656514_SNP [dm6]	T	A	4.632e^-4	0.888	UPSTREAM pdm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14556005	3R_14556005_SNP [dm3] 3R_18730283_SNP [dm6]	C	A	4.637e^-4	0.888	INTRON Cha	TF binding site mE1_TFBS_chinmo
3R	14556040	3R_14556040_SNP [dm3] 3R_18730318_SNP [dm6]	A	C	4.637e^-4	0.888	SPLICE_SITE_REGION Cha INTRON Cha	TF binding site mE1_TFBS_chinmo
X	847315	X_847315_SNP [dm3] X_953282_SNP [dm6]	A	G	4.638e^-4	0.888	INTERGENIC
3R	25966384	3R_25966384_DEL [dm3] 3R_30140662_DEL [dm6]	ATTGTAGTCATACTC...	A	4.640e^-4	0.888	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22508916	3L_22508916_SNP [dm3] 3L_22515816_SNP [dm6]	C	G	4.641e^-4	0.888	INTERGENIC
3R	11957365	3R_11957365_SNP [dm3] 3R_16131643_SNP [dm6]	T	C	4.644e^-4	0.888	INTRON Sb
3R	15617697	3R_15617697_INS [dm3] 3R_19791975_INS [dm6]	C	CAAAGACACTAGAATATATA...	4.646e^-4	0.888	DOWNSTREAM tRNA:CR31215 INTERGENIC
3L	19156542	3L_19156542_SNP [dm3] 3L_19163442_SNP [dm6]	A	T	4.646e^-4	0.888	INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	10011800	3R_10011800_SNP [dm3] 3R_14186078_SNP [dm6]	A	G	4.646e^-4	0.888	INTRON Dop1R1
X	997587	X_997587_INS [dm3] X_1103554_INS [dm6]	A	AT	4.647e^-4	0.888	INTRON CG3655
2L	13914137	2L_13914137_SNP [dm3] 2L_13914137_SNP [dm6]	T	A	4.660e^-4	0.888	UPSTREAM Ance-3 INTERGENIC
3L	1821680	3L_1821680_SNP [dm3] 3L_1821680_SNP [dm6]	T	A	4.663e^-4	0.888	INTRON GV1
3L	5274571	3L_5274571_SNP [dm3] 3L_5281471_SNP [dm6]	A	T	4.665e^-4	0.888	INTERGENIC
3L	1021004	3L_1021004_SNP [dm3] 3L_1021004_SNP [dm6]	T	C	4.666e^-4	0.888	INTRON trio
3L	5165851	3L_5165851_SNP [dm3] 3L_5172751_SNP [dm6]	C	G	4.667e^-4	0.888	INTRON shep
3L	16483188	3L_16483188_SNP [dm3] 3L_16490088_SNP [dm6]	G	A	4.667e^-4	0.888	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	2688339	X_2688339_SNP [dm3] X_2794306_SNP [dm6]	A	T	4.671e^-4	0.888	INTRON kirre & 1 other	regulatory region REDfly_CRMs
3R	15700077	3R_15700077_SNP [dm3] 3R_19874355_SNP [dm6]	A	G	4.676e^-4	0.888	SYNONYMOUS_CODING CG4562	TF binding site mE1_TFBS_Trl
3R	23849917	3R_23849917_SNP [dm3] 3R_28024195_SNP [dm6]	T	C	4.680e^-4	0.888	INTERGENIC
X	5651013	X_5651013_SNP [dm3] X_5756980_SNP [dm6]	C	A	4.690e^-4	0.888	UPSTREAM CR45528 INTRON CG15771
2R	8407522	2R_8407522_SNP [dm3] 2R_12520017_SNP [dm6]	G	T	4.692e^-4	0.888	NON_SYNONYMOUS_CODING CG8569	TF binding site mE1_TFBS_cad
3R	26989559	3R_26989559_SNP [dm3] 3R_31163837_SNP [dm6]	G	A	4.694e^-4	0.888	INTRON Gycbeta100B & 1 other
2L	14013315	2L_14013315_SNP [dm3] 2L_14013315_SNP [dm6]	T	A	4.698e^-4	0.888	UPSTREAM bgm INTRON bgm	TF binding site BDTNP1_TFBS_dl
3R	14655839	3R_14655839_DEL [dm3] 3R_18830117_DEL [dm6]	TAGTAAACAGCTGAAGTTTA...	T	4.710e^-4	0.888	INTRON CG18208
3R	18235848	3R_18235848_SNP [dm3] 3R_22410126_SNP [dm6]	C	G	4.710e^-4	0.888	NON_SYNONYMOUS_CODING CG13850	TF binding site mE1_TFBS_sens
3L	7709767	3L_7709767_SNP [dm3] 3L_7716667_SNP [dm6]	A	G	4.717e^-4	0.888	UPSTREAM Ank2 INTRON CG32373 & 1 other
2R	14824381	2R_14824381_SNP [dm3] 2R_18936876_SNP [dm6]	A	G	4.724e^-4	0.888	INTRON sano
X	17365889	X_17365889_SNP [dm3] X_17471856_SNP [dm6]	C	A	4.726e^-4	0.888	INTRON CG43658
3R	1039395	3R_1039395_SNP [dm3] 3R_5213673_SNP [dm6]	A	G	4.726e^-4	0.888	INTRON cno	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	592456	X_592456_SNP [dm3] X_698423_SNP [dm6]	T	C	4.730e^-4	0.888	INTRON sdk
3L	18399183	3L_18399183_SNP [dm3] 3L_18406083_SNP [dm6]	G	A	4.741e^-4	0.888	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19939837	2L_19939837_SNP [dm3] 2L_19939837_SNP [dm6]	C	T	4.741e^-4	0.888	INTRON sick	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
X	17321855	X_17321855_SNP [dm3] X_17427822_SNP [dm6]	G	A	4.743e^-4	0.888	SYNONYMOUS_CODING CG5613 INTRON CG12994	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7469438	3L_7469438_SNP [dm3] 3L_7476338_SNP [dm6]	A	T	4.754e^-4	0.888	DOWNSTREAM CG43292 INTERGENIC
2L	12656513	2L_12656513_SNP [dm3] 2L_12656513_SNP [dm6]	C	G	4.760e^-4	0.888	UPSTREAM pdm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19001174	X_19001174_SNP [dm3] X_19107141_SNP [dm6]	T	C	4.771e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4387788	3L_4387788_SNP [dm3] 3L_4387788_SNP [dm6]	A	G	4.798e^-4	0.888	INTRON slow
2R	20547984	2R_20547984_SNP [dm3] 2R_24660461_SNP [dm6]	A	G	4.801e^-4	0.888	INTERGENIC
3L	16325960	3L_16325960_INS [dm3] 3L_16332860_INS [dm6]	G	TA	4.803e^-4	0.888	UPSTREAM CG13056 DOWNSTREAM retinin INTERGENIC
X	997535	X_997535_INS [dm3] X_1103502_INS [dm6]	A	AC	4.813e^-4	0.888	INTRON CG3655
2L	12608481	2L_12608481_SNP [dm3] 2L_12608481_SNP [dm6]	A	T	4.819e^-4	0.888	INTRON nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	10239474	2R_10239474_SNP [dm3] 2R_14351969_SNP [dm6]	T	A	4.824e^-4	0.888	UPSTREAM CG8613 DOWNSTREAM Shroom INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
3L	1821670	3L_1821670_SNP [dm3] 3L_1821670_SNP [dm6]	C	T	4.830e^-4	0.888	INTRON GV1
3R	18908233	3R_18908233_SNP [dm3] 3R_23082511_SNP [dm6]	A	C	4.831e^-4	0.888	INTRON CG13830
X	9462947	X_9462947_SNP [dm3] X_9568914_SNP [dm6]	T	G	4.832e^-4	0.888	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12123361	2R_12123361_SNP [dm3] 2R_16235856_SNP [dm6]	A	G	4.835e^-4	0.888	UPSTREAM CG7786 & 1 other INTERGENIC
2L	17698544	2L_17698544_SNP [dm3] 2L_17698544_SNP [dm6]	T	C	4.842e^-4	0.888	INTRON CadN
3L	5334234	3L_5334234_SNP [dm3] 3L_5341134_SNP [dm6]	C	G	4.846e^-4	0.888	UPSTREAM tRNA:S7:64D INTERGENIC
3R	22612376	3R_22612376_SNP [dm3] 3R_26786654_SNP [dm6]	C	T	4.866e^-4	0.888	DOWNSTREAM CG42790 INTERGENIC
3L	6080223	3L_6080223_SNP [dm3] 3L_6087123_SNP [dm6]	T	C	4.889e^-4	0.888	INTRON CG13293
3L	12751619	3L_12751619_SNP [dm3] 3L_12758519_SNP [dm6]	T	G	4.900e^-4	0.888	INTRON CG32113	TF binding site mE1_TFBS_inv
2R	20562928	2R_20562928_SNP [dm3] 2R_24675405_SNP [dm6]	T	A	4.905e^-4	0.888	SYNONYMOUS_CODING Mmp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	2084330	2L_2084330_SNP [dm3] 2L_2084330_SNP [dm6]	A	T	4.917e^-4	0.888	INTRON dpr3 EXON CR44055	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26036651	3R_26036651_INS [dm3] 3R_30210929_INS [dm6]	A	AC	4.917e^-4	0.888	UTR_5_PRIME CecA1 UPSTREAM Cec-Psi1 DOWNSTREAM Anp	regulatory region REDfly_CRMs
3L	7749774	3L_7749774_SNP [dm3] 3L_7756674_SNP [dm6]	A	G	4.923e^-4	0.888	UPSTREAM CG32373 INTRON CG32373
3R	25966369	3R_25966369_SNP [dm3] 3R_30140647_SNP [dm6]	G	A	4.928e^-4	0.888	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20554526	2L_20554526_SNP [dm3] 2L_20554526_SNP [dm6]	A	G	4.935e^-4	0.888	INTERGENIC
3R	18908273	3R_18908273_SNP [dm3] 3R_23082551_SNP [dm6]	G	A	4.941e^-4	0.888	INTRON CG13830
2L	5902982	2L_5902982_SNP [dm3] 2L_5902982_SNP [dm6]	C	T	4.942e^-4	0.888	DOWNSTREAM CG9021 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14033221	3R_14033221_SNP [dm3] 3R_18207499_SNP [dm6]	T	G	4.948e^-4	0.888	INTRON CG7985

By genomic position
Variant impact
Gene name

Sc2_CT phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results