DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.805e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.09357

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.0561	0.0798

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

724 significant hits at p-value < 0.001.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	7849329	3L_7849329_INS [dm3] 3L_7856229_INS [dm6]	A	AT	3.395e^-4	0.832	UPSTREAM Pdp1 INTRON Pdp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24232086	3R_24232086_SNP [dm3] 3R_28406364_SNP [dm6]	T	A	4.724e^-4	0.832	INTERGENIC
X	14749593	X_14749593_SNP [dm3] X_14855560_SNP [dm6]	A	G	4.724e^-4	0.832	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7703775	2L_7703775_SNP [dm3] 2L_7703775_SNP [dm6]	T	A	5.305e^-4	0.832	INTRON Tep3
2L	11682326	2L_11682326_DEL [dm3] 2L_11682326_DEL [dm6]	AA	A	5.453e^-4	0.832	INTERGENIC
2R	12444838	2R_12444838_SNP [dm3] 2R_16557333_SNP [dm6]	A	G	5.453e^-4	0.832	UTR_3_PRIME Syn2 DOWNSTREAM Syn2
3R	11958690	3R_11958690_SNP [dm3] 3R_16132968_SNP [dm6]	T	C	5.453e^-4	0.832	INTRON Sb
X	11315426	X_11315426_DEL [dm3] X_11421393_DEL [dm6]	AA	A	5.685e^-4	0.832	INTERGENIC
2R	10111729	2R_10111729_SNP [dm3] 2R_14224224_SNP [dm6]	G	T	7.232e^-4	0.832	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7459008	2R_7459008_SNP [dm3] 2R_11571503_SNP [dm6]	G	T	7.232e^-4	0.832	INTERGENIC
2R	8673614	2R_8673614_SNP [dm3] 2R_12786109_SNP [dm6]	G	A	7.232e^-4	0.832	INTRON sca EXON CR45137	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9660885	2R_9660885_SNP [dm3] 2R_13773380_SNP [dm6]	C	T	7.232e^-4	0.832	INTRON Cpr50Ca	TF binding site mE1_TFBS_inv
3L	12497170	3L_12497170_SNP [dm3] 3L_12504070_SNP [dm6]	C	G	7.232e^-4	0.832	UPSTREAM vih & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12497215	3L_12497215_INS [dm3] 3L_12504115_INS [dm6]	T	TT	7.232e^-4	0.832	UPSTREAM vih & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16210095	3L_16210095_SNP [dm3] 3L_16216995_SNP [dm6]	G	A	7.232e^-4	0.832	INTRON CG13073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5306936	3L_5306936_SNP [dm3] 3L_5313836_SNP [dm6]	A	C	7.232e^-4	0.832	INTERGENIC
3R	14063422	3R_14063422_SNP [dm3] 3R_18237700_SNP [dm6]	T	C	7.232e^-4	0.832	INTRON repo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8590347	3R_8590347_SNP [dm3] 3R_12764625_SNP [dm6]	T	C	7.232e^-4	0.832	INTRON beat-Vc
X	10007175	X_10007175_SNP [dm3] X_10113142_SNP [dm6]	G	A	7.232e^-4	0.832	INTRON RhoU	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA
X	11203773	X_11203773_SNP [dm3] X_11309740_SNP [dm6]	A	G	7.232e^-4	0.832	INTRON Ir10a
X	4283449	X_4283449_DEL [dm3] X_4389416_DEL [dm6]	CCTACGTTATAGGC...	C	7.232e^-4	0.832	INTRON CR32773
X	5434610	X_5434610_INS [dm3] X_5540577_INS [dm6]	A	AACAAACA	7.232e^-4	0.832	INTRON Vsx2	TF binding site BDTNP1_TFBS_hb
X	6801877	X_6801877_SNP [dm3] X_6907844_SNP [dm6]	T	C	7.232e^-4	0.832	UPSTREAM CG14431 INTERGENIC
X	6801896	X_6801896_DEL [dm3] X_6907863_DEL [dm6]	CC	C	7.232e^-4	0.832	UPSTREAM CG14431 INTERGENIC
X	6801903	X_6801903_SNP [dm3] X_6907870_SNP [dm6]	A	T	7.232e^-4	0.832	UPSTREAM CG14431 INTERGENIC
X	6801926	X_6801926_DEL [dm3] X_6907893_DEL [dm6]	ATGTC	A	7.232e^-4	0.832	UPSTREAM CG14431 INTERGENIC
2L	1080153	2L_1080153_SNP [dm3] 2L_1080153_SNP [dm6]	G	A	7.692e^-4	0.832	NON_SYNONYMOUS_CODING ast UPSTREAM Atg4a	TF binding site mE1_TFBS_sens
2L	1080185	2L_1080185_SNP [dm3] 2L_1080185_SNP [dm6]	T	G	7.692e^-4	0.832	SYNONYMOUS_CODING ast UPSTREAM Atg4a	TF binding site mE1_TFBS_sens
2R	10113988	2R_10113988_SNP [dm3] 2R_14226483_SNP [dm6]	A	G	7.692e^-4	0.832	INTRON CG8468
2R	10235648	2R_10235648_SNP [dm3] 2R_14348143_SNP [dm6]	G	A	7.692e^-4	0.832	INTRON Shroom
2R	11753976	2R_11753976_SNP [dm3] 2R_15866471_SNP [dm6]	C	T	7.692e^-4	0.832	SYNONYMOUS_CODING Rif1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11784437	2R_11784437_SNP [dm3] 2R_15896932_SNP [dm6]	C	A	7.692e^-4	0.832	UPSTREAM CG33463 INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	11937797	2R_11937797_SNP [dm3] 2R_16050292_SNP [dm6]	G	T	7.692e^-4	0.832	INTRON CG8405
2R	11954400	2R_11954400_INS [dm3] 2R_16066895_INS [dm6]	A	ACAAGAA	7.692e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11954409	2R_11954409_SNP [dm3] 2R_16066904_SNP [dm6]	C	A	7.692e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12134404	2R_12134404_SNP [dm3] 2R_16246899_SNP [dm6]	T	C	7.692e^-4	0.832	SYNONYMOUS_CODING CngA
2R	12329382	2R_12329382_SNP [dm3] 2R_16441877_SNP [dm6]	C	T	7.692e^-4	0.832	INTERGENIC
2R	12329440	2R_12329440_SNP [dm3] 2R_16441935_SNP [dm6]	G	C	7.692e^-4	0.832	INTERGENIC
2R	12329454	2R_12329454_SNP [dm3] 2R_16441949_SNP [dm6]	A	G	7.692e^-4	0.832	INTERGENIC
2R	12330113	2R_12330113_SNP [dm3] 2R_16442608_SNP [dm6]	G	A	7.692e^-4	0.832	UPSTREAM CG4409 INTERGENIC
2R	12543841	2R_12543841_SNP [dm3] 2R_16656336_SNP [dm6]	A	G	7.692e^-4	0.832	SYNONYMOUS_CODING Picot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12543865	2R_12543865_SNP [dm3] 2R_16656360_SNP [dm6]	G	A	7.692e^-4	0.832	SYNONYMOUS_CODING Picot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12559022	2R_12559022_SNP [dm3] 2R_16671517_SNP [dm6]	G	A	7.692e^-4	0.832	SYNONYMOUS_CODING CG34457 UPSTREAM CG34458
2R	12598936	2R_12598936_SNP [dm3] 2R_16711431_SNP [dm6]	T	C	7.692e^-4	0.832	INTRON CG30463
2R	12637739	2R_12637739_SNP [dm3] 2R_16750234_SNP [dm6]	G	C	7.692e^-4	0.832	UPSTREAM Acp53C14b DOWNSTREAM Acp53C14c INTRON Acp53Ea
2R	12715906	2R_12715906_SNP [dm3] 2R_16828401_SNP [dm6]	C	T	7.692e^-4	0.832	UPSTREAM CR43650 DOWNSTREAM CG34460 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	12715947	2R_12715947_SNP [dm3] 2R_16828442_SNP [dm6]	T	A	7.692e^-4	0.832	UPSTREAM CR43650 DOWNSTREAM CG34460 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12715972	2R_12715972_SNP [dm3] 2R_16828467_SNP [dm6]	T	C	7.692e^-4	0.832	UPSTREAM CR43650 DOWNSTREAM CG34460 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12715984	2R_12715984_DEL [dm3] 2R_16828479_DEL [dm6]	AA	A	7.692e^-4	0.832	UPSTREAM CR43650 DOWNSTREAM CG34460 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12715993	2R_12715993_SNP [dm3] 2R_16828488_SNP [dm6]	A	C	7.692e^-4	0.832	UPSTREAM CR43650 DOWNSTREAM CG34460 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12716007	2R_12716007_SNP [dm3] 2R_16828502_SNP [dm6]	T	A	7.692e^-4	0.832	UPSTREAM CR43650 DOWNSTREAM CG34460 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12716087	2R_12716087_SNP [dm3] 2R_16828582_SNP [dm6]	T	A	7.692e^-4	0.832	UPSTREAM CR43650 DOWNSTREAM CG34460 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12716159	2R_12716159_DEL [dm3] 2R_16828654_DEL [dm6]	AGA	G	7.692e^-4	0.832	UPSTREAM CR43650 DOWNSTREAM CG34460 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	13173312	2R_13173312_SNP [dm3] 2R_17285807_SNP [dm6]	G	A	7.692e^-4	0.832	INTRON mbl
2R	13173348	2R_13173348_MNP [dm3] 2R_17285843_MNP [dm6]	TTT	CAA	7.692e^-4	0.832	INTRON mbl
2R	13173356	2R_13173356_SNP [dm3] 2R_17285851_SNP [dm6]	T	A	7.692e^-4	0.832	INTRON mbl
2R	13173358	2R_13173358_SNP [dm3] 2R_17285853_SNP [dm6]	T	C	7.692e^-4	0.832	INTRON mbl
2R	13173361	2R_13173361_SNP [dm3] 2R_17285856_SNP [dm6]	G	T	7.692e^-4	0.832	INTRON mbl
2R	13173372	2R_13173372_SNP [dm3] 2R_17285867_SNP [dm6]	A	T	7.692e^-4	0.832	INTRON mbl
2R	13173378	2R_13173378_DEL [dm3] 2R_17285873_DEL [dm6]	TTATATTATAACCTTTGAAA...	T	7.692e^-4	0.832	INTRON mbl
2R	13173401	2R_13173401_SNP [dm3] 2R_17285896_SNP [dm6]	A	G	7.692e^-4	0.832	INTRON mbl
2R	13173447	2R_13173447_SNP [dm3] 2R_17285942_SNP [dm6]	T	G	7.692e^-4	0.832	INTRON mbl
2R	13173475	2R_13173475_SNP [dm3] 2R_17285970_SNP [dm6]	T	C	7.692e^-4	0.832	INTRON mbl
2R	13173964	2R_13173964_SNP [dm3] 2R_17286459_SNP [dm6]	T	C	7.692e^-4	0.832	INTRON mbl
2R	13217778	2R_13217778_SNP [dm3] 2R_17330273_SNP [dm6]	T	A	7.692e^-4	0.832	INTRON mbl
2R	13217797	2R_13217797_SNP [dm3] 2R_17330292_SNP [dm6]	G	A	7.692e^-4	0.832	INTRON mbl
2R	13540451	2R_13540451_SNP [dm3] 2R_17652946_SNP [dm6]	C	T	7.692e^-4	0.832	INTRON CCHa1-R
2R	13540749	2R_13540749_SNP [dm3] 2R_17653244_SNP [dm6]	T	A	7.692e^-4	0.832	INTRON CCHa1-R
2R	13596370	2R_13596370_SNP [dm3] 2R_17708865_SNP [dm6]	T	C	7.692e^-4	0.832	UTR_5_PRIME CG6424 INTRON CG6424
2R	13796934	2R_13796934_INS [dm3] 2R_17909429_INS [dm6]	C	CC	7.692e^-4	0.832	INTRON Elk
2R	14108245	2R_14108245_SNP [dm3] 2R_18220740_SNP [dm6]	A	G	7.692e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14108278	2R_14108278_SNP [dm3] 2R_18220773_SNP [dm6]	G	A	7.692e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14108724	2R_14108724_SNP [dm3] 2R_18221219_SNP [dm6]	C	T	7.692e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14108744	2R_14108744_SNP [dm3] 2R_18221239_SNP [dm6]	A	C	7.692e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14108785	2R_14108785_SNP [dm3] 2R_18221280_SNP [dm6]	T	C	7.692e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14109060	2R_14109060_SNP [dm3] 2R_18221555_SNP [dm6]	G	A	7.692e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14119095	2R_14119095_SNP [dm3] 2R_18231590_SNP [dm6]	T	G	7.692e^-4	0.832	UPSTREAM CR45311 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	14119096	2R_14119096_SNP [dm3] 2R_18231591_SNP [dm6]	T	G	7.692e^-4	0.832	UPSTREAM CR45311 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	14119230	2R_14119230_SNP [dm3] 2R_18231725_SNP [dm6]	T	A	7.692e^-4	0.832	UPSTREAM CR45311 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	14129155	2R_14129155_SNP [dm3] 2R_18241650_SNP [dm6]	A	G	7.692e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	14583698	2R_14583698_SNP [dm3] 2R_18696193_SNP [dm6]	G	A	7.692e^-4	0.832	UPSTREAM CG15071 INTRON Sik3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16050137	2R_16050137_SNP [dm3] 2R_20162632_SNP [dm6]	G	T	7.692e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16070975	2R_16070975_SNP [dm3] 2R_20183470_SNP [dm6]	A	G	7.692e^-4	0.832	INTERGENIC
2R	16112587	2R_16112587_DEL [dm3] 2R_20225082_DEL [dm6]	CC	C	7.692e^-4	0.832	INTERGENIC
2R	16113302	2R_16113302_SNP [dm3] 2R_20225797_SNP [dm6]	T	G	7.692e^-4	0.832	INTERGENIC
2R	16425934	2R_16425934_SNP [dm3] 2R_20538429_SNP [dm6]	G	C	7.692e^-4	0.832	DOWNSTREAM CG13427 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16723798	2R_16723798_SNP [dm3] 2R_20836293_SNP [dm6]	T	C	7.692e^-4	0.832	UPSTREAM insc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16780188	2R_16780188_SNP [dm3] 2R_20892683_SNP [dm6]	T	C	7.692e^-4	0.832	INTRON otp
2R	16780562	2R_16780562_SNP [dm3] 2R_20893057_SNP [dm6]	T	G	7.692e^-4	0.832	INTRON otp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16834430	2R_16834430_SNP [dm3] 2R_20946925_SNP [dm6]	A	C	7.692e^-4	0.832	DOWNSTREAM snoRNA:660 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2R	16951558	2R_16951558_SNP [dm3] 2R_21064053_SNP [dm6]	G	T	7.692e^-4	0.832	NON_SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht8
2R	16953986	2R_16953986_SNP [dm3] 2R_21066481_SNP [dm6]	A	T	7.692e^-4	0.832	SYNONYMOUS_CODING Cht4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17024793	2R_17024793_SNP [dm3] 2R_21137288_SNP [dm6]	C	A	7.692e^-4	0.832	INTRON Magi
2R	17174055	2R_17174055_SNP [dm3] 2R_21286550_SNP [dm6]	T	C	7.692e^-4	0.832	SYNONYMOUS_CODING CG10505 DOWNSTREAM MFS16
2R	17174061	2R_17174061_SNP [dm3] 2R_21286556_SNP [dm6]	G	A	7.692e^-4	0.832	SYNONYMOUS_CODING CG10505 DOWNSTREAM MFS16
2R	17174124	2R_17174124_SNP [dm3] 2R_21286619_SNP [dm6]	T	C	7.692e^-4	0.832	SYNONYMOUS_CODING CG10505 DOWNSTREAM MFS16
2R	17622162	2R_17622162_SNP [dm3] 2R_21734657_SNP [dm6]	A	G	7.692e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17622169	2R_17622169_SNP [dm3] 2R_21734664_SNP [dm6]	A	G	7.692e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17642757	2R_17642757_SNP [dm3] 2R_21755252_SNP [dm6]	T	G	7.692e^-4	0.832	INTERGENIC
2R	17642980	2R_17642980_SNP [dm3] 2R_21755475_SNP [dm6]	T	G	7.692e^-4	0.832	INTERGENIC
2R	17800946	2R_17800946_SNP [dm3] 2R_21913441_SNP [dm6]	C	G	7.692e^-4	0.832	INTRON Fili
2R	18623250	2R_18623250_SNP [dm3] 2R_22735745_SNP [dm6]	G	A	7.692e^-4	0.832	INTRON jbug
2R	18872412	2R_18872412_SNP [dm3] 2R_22984889_SNP [dm6]	A	G	7.692e^-4	0.832	SYNONYMOUS_CODING CG32833 UPSTREAM CG32834 & 2 others DOWNSTREAM mir-4939 & 1 other
2R	19221422	2R_19221422_SNP [dm3] 2R_23333899_SNP [dm6]	C	G	7.692e^-4	0.832	INTERGENIC
2R	19305709	2R_19305709_SNP [dm3] 2R_23418186_SNP [dm6]	A	G	7.692e^-4	0.832	DOWNSTREAM CG30411 INTRON CG9812
2R	19305725	2R_19305725_SNP [dm3] 2R_23418202_SNP [dm6]	C	T	7.692e^-4	0.832	DOWNSTREAM CG30411 INTRON CG9812
2R	19454934	2R_19454934_SNP [dm3] 2R_23567411_SNP [dm6]	G	A	7.692e^-4	0.832	UPSTREAM apt INTRON apt
2R	19454936	2R_19454936_SNP [dm3] 2R_23567413_SNP [dm6]	C	A	7.692e^-4	0.832	UPSTREAM apt INTRON apt
2R	19454946	2R_19454946_SNP [dm3] 2R_23567423_SNP [dm6]	T	A	7.692e^-4	0.832	UPSTREAM apt INTRON apt
2R	19454948	2R_19454948_SNP [dm3] 2R_23567425_SNP [dm6]	T	A	7.692e^-4	0.832	UPSTREAM apt INTRON apt
2R	19454956	2R_19454956_INS [dm3] 2R_23567433_INS [dm6]	G	GATTTTTTGAGGCGAGAATA...	7.692e^-4	0.832	UPSTREAM apt INTRON apt
2R	19454966	2R_19454966_INS [dm3] 2R_23567443_INS [dm6]	T	TCTGCCACACTGAAAACACT...	7.692e^-4	0.832	UPSTREAM apt INTRON apt
2R	19480135	2R_19480135_SNP [dm3] 2R_23592612_SNP [dm6]	T	C	7.692e^-4	0.832	INTRON apt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19549509	2R_19549509_SNP [dm3] 2R_23661986_SNP [dm6]	C	T	7.692e^-4	0.832	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4869680	2R_4869680_SNP [dm3] 2R_8982175_SNP [dm6]	C	A	7.692e^-4	0.832	INTRON CG8213
2R	4869694	2R_4869694_SNP [dm3] 2R_8982189_SNP [dm6]	T	C	7.692e^-4	0.832	INTRON CG8213
2R	4869706	2R_4869706_SNP [dm3] 2R_8982201_SNP [dm6]	C	G	7.692e^-4	0.832	INTRON CG8213
2R	6108413	2R_6108413_SNP [dm3] 2R_10220908_SNP [dm6]	T	C	7.692e^-4	0.832	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	6109224	2R_6109224_SNP [dm3] 2R_10221719_SNP [dm6]	C	T	7.692e^-4	0.832	INTRON Hr46 & 1 other
2R	6109956	2R_6109956_SNP [dm3] 2R_10222451_SNP [dm6]	G	C	7.692e^-4	0.832	INTRON Hr46 & 1 other
2R	6110678	2R_6110678_INS [dm3] 2R_10223173_INS [dm6]	T	TAT	7.692e^-4	0.832	UTR_5_PRIME Hr46 INTRON Hr46 & 1 other
2R	6110949	2R_6110949_INS [dm3] 2R_10223444_INS [dm6]	G	GG	7.692e^-4	0.832	UTR_5_PRIME Hr46 INTRON Hr46 & 1 other
2R	6111007	2R_6111007_SNP [dm3] 2R_10223502_SNP [dm6]	G	A	7.692e^-4	0.832	UTR_5_PRIME Hr46 INTRON Hr46 & 1 other
2R	6114748	2R_6114748_SNP [dm3] 2R_10227243_SNP [dm6]	A	T	7.692e^-4	0.832	INTRON Hr46 & 1 other	TF binding site mE1_TFBS_Trl
2R	6114789	2R_6114789_SNP [dm3] 2R_10227284_SNP [dm6]	A	G	7.692e^-4	0.832	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6121836	2R_6121836_SNP [dm3] 2R_10234331_SNP [dm6]	C	G	7.692e^-4	0.832	UTR_5_PRIME Hr46 & 1 other INTRON Hr46	TF binding site BDTNP1_TFBS_dl
2R	7015770	2R_7015770_SNP [dm3] 2R_11128265_SNP [dm6]	G	T	7.692e^-4	0.832	INTERGENIC
2R	7412811	2R_7412811_SNP [dm3] 2R_11525306_SNP [dm6]	C	T	7.692e^-4	0.832	INTRON en	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	7534217	2R_7534217_SNP [dm3] 2R_11646712_SNP [dm6]	T	A	7.692e^-4	0.832	UPSTREAM CG9003 INTRON CG9003	TF binding site BDTNP1_TFBS_dl
2R	7534226	2R_7534226_SNP [dm3] 2R_11646721_SNP [dm6]	G	A	7.692e^-4	0.832	UPSTREAM CG9003 INTRON CG9003	TF binding site BDTNP1_TFBS_dl
2R	7534251	2R_7534251_SNP [dm3] 2R_11646746_SNP [dm6]	A	G	7.692e^-4	0.832	UPSTREAM CG9003 INTRON CG9003	TF binding site BDTNP1_TFBS_dl
2R	8378042	2R_8378042_SNP [dm3] 2R_12490537_SNP [dm6]	A	G	7.692e^-4	0.832	SYNONYMOUS_CODING fdl
2R	8384562	2R_8384562_SNP [dm3] 2R_12497057_SNP [dm6]	G	A	7.692e^-4	0.832	INTRON fdl & 1 other	TF binding site mE1_TFBS_inv
2R	8426338	2R_8426338_SNP [dm3] 2R_12538833_SNP [dm6]	A	G	7.692e^-4	0.832	INTRON fra	TF binding site mE1_TFBS_cad
2R	8426348	2R_8426348_SNP [dm3] 2R_12538843_SNP [dm6]	G	A	7.692e^-4	0.832	INTRON fra	TF binding site mE1_TFBS_cad
2R	8656199	2R_8656199_SNP [dm3] 2R_12768694_SNP [dm6]	A	G	7.692e^-4	0.832	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	9021795	2R_9021795_SNP [dm3] 2R_13134290_SNP [dm6]	T	G	7.692e^-4	0.832	SYNONYMOUS_CODING Cap-G	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	9022691	2R_9022691_SNP [dm3] 2R_13135186_SNP [dm6]	C	T	7.692e^-4	0.832	SYNONYMOUS_CODING Cap-G	TF binding site mE1_TFBS_sens
2R	9385593	2R_9385593_SNP [dm3] 2R_13498088_SNP [dm6]	G	A	7.692e^-4	0.832	INTRON drk
2R	9385853	2R_9385853_SNP [dm3] 2R_13498348_SNP [dm6]	G	A	7.692e^-4	0.832	INTRON drk
2R	9663153	2R_9663153_SNP [dm3] 2R_13775648_SNP [dm6]	A	C	7.692e^-4	0.832	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9663155	2R_9663155_SNP [dm3] 2R_13775650_SNP [dm6]	A	G	7.692e^-4	0.832	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9767517	2R_9767517_SNP [dm3] 2R_13880012_SNP [dm6]	A	G	7.692e^-4	0.832	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
2R	9768625	2R_9768625_SNP [dm3] 2R_13881120_SNP [dm6]	A	C	7.692e^-4	0.832	NON_SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9796095	2R_9796095_SNP [dm3] 2R_13908590_SNP [dm6]	C	T	7.692e^-4	0.832	INTRON shot
2R	9836494	2R_9836494_SNP [dm3] 2R_13948989_SNP [dm6]	G	T	7.692e^-4	0.832	SYNONYMOUS_CODING AGO1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10717741	3L_10717741_SNP [dm3] 3L_10724641_SNP [dm6]	G	A	7.692e^-4	0.832	INTERGENIC
3L	1094564	3L_1094564_SNP [dm3] 3L_1094564_SNP [dm6]	A	G	7.692e^-4	0.832	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	1094578	3L_1094578_SNP [dm3] 3L_1094578_SNP [dm6]	A	T	7.692e^-4	0.832	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	11399631	3L_11399631_SNP [dm3] 3L_11406531_SNP [dm6]	A	G	7.692e^-4	0.832	DOWNSTREAM CR44363 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	11399680	3L_11399680_SNP [dm3] 3L_11406580_SNP [dm6]	T	C	7.692e^-4	0.832	DOWNSTREAM CR44363 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	11843127	3L_11843127_SNP [dm3] 3L_11850027_SNP [dm6]	T	C	7.692e^-4	0.832	DOWNSTREAM CG44837 INTERGENIC
3L	12002623	3L_12002623_SNP [dm3] 3L_12009523_SNP [dm6]	A	G	7.692e^-4	0.832	SYNONYMOUS_CODING rols	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	12002657	3L_12002657_SNP [dm3] 3L_12009557_SNP [dm6]	A	G	7.692e^-4	0.832	SYNONYMOUS_CODING rols	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	12403622	3L_12403622_SNP [dm3] 3L_12410522_SNP [dm6]	C	A	7.692e^-4	0.832	INTRON CG32103
3L	12496670	3L_12496670_SNP [dm3] 3L_12503570_SNP [dm6]	T	C	7.692e^-4	0.832	SYNONYMOUS_CODING CG10646 UPSTREAM vih DOWNSTREAM CG10681	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	12497198	3L_12497198_SNP [dm3] 3L_12504098_SNP [dm6]	C	T	7.692e^-4	0.832	UPSTREAM vih & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12497242	3L_12497242_SNP [dm3] 3L_12504142_SNP [dm6]	G	T	7.692e^-4	0.832	UPSTREAM vih & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13592733	3L_13592733_SNP [dm3] 3L_13599633_SNP [dm6]	T	C	7.692e^-4	0.832	INTRON bru-3 EXON CR45120
3L	13682015	3L_13682015_SNP [dm3] 3L_13688915_SNP [dm6]	T	A	7.692e^-4	0.832	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14188025	3L_14188025_SNP [dm3] 3L_14194925_SNP [dm6]	T	G	7.692e^-4	0.832	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14339899	3L_14339899_INS [dm3] 3L_14346799_INS [dm6]	T	TATAT	7.692e^-4	0.832	INTRON fz	TF binding site mE1_TFBS_cnc
3L	14860723	3L_14860723_SNP [dm3] 3L_14867623_SNP [dm6]	A	G	7.692e^-4	0.832	NON_SYNONYMOUS_CODING CG17839 INTRON CG17839
3L	14892452	3L_14892452_SNP [dm3] 3L_14899352_SNP [dm6]	G	C	7.692e^-4	0.832	INTERGENIC
3L	14894502	3L_14894502_SNP [dm3] 3L_14901402_SNP [dm6]	C	A	7.692e^-4	0.832	INTERGENIC
3L	14894714	3L_14894714_SNP [dm3] 3L_14901614_SNP [dm6]	A	C	7.692e^-4	0.832	INTERGENIC
3L	14894792	3L_14894792_SNP [dm3] 3L_14901692_SNP [dm6]	T	C	7.692e^-4	0.832	INTERGENIC
3L	16509281	3L_16509281_SNP [dm3] 3L_16516181_SNP [dm6]	T	G	7.692e^-4	0.832	INTRON CG43373
3L	16509282	3L_16509282_SNP [dm3] 3L_16516182_SNP [dm6]	T	A	7.692e^-4	0.832	INTRON CG43373
3L	16509301	3L_16509301_SNP [dm3] 3L_16516201_SNP [dm6]	G	T	7.692e^-4	0.832	INTRON CG43373
3L	16510730	3L_16510730_SNP [dm3] 3L_16517630_SNP [dm6]	A	G	7.692e^-4	0.832	SYNONYMOUS_CODING CG43373
3L	18026570	3L_18026570_SNP [dm3] 3L_18033470_SNP [dm6]	G	C	7.692e^-4	0.832	INTRON Eip75B
3L	18193672	3L_18193672_SNP [dm3] 3L_18200572_SNP [dm6]	C	A	7.692e^-4	0.832	UPSTREAM CG7320 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	18206073	3L_18206073_INS [dm3] 3L_18212973_INS [dm6]	C	CT	7.692e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_sens
3L	18275053	3L_18275053_SNP [dm3] 3L_18281953_SNP [dm6]	A	G	7.692e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1882403	3L_1882403_SNP [dm3] 3L_1882403_SNP [dm6]	T	G	7.692e^-4	0.832	UTR_5_PRIME CG13937 INTRON CG13937
3L	1882404	3L_1882404_SNP [dm3] 3L_1882404_SNP [dm6]	C	T	7.692e^-4	0.832	UTR_5_PRIME CG13937 INTRON CG13937
3L	1882407	3L_1882407_SNP [dm3] 3L_1882407_SNP [dm6]	A	G	7.692e^-4	0.832	UTR_5_PRIME CG13937 INTRON CG13937
3L	1882884	3L_1882884_SNP [dm3] 3L_1882884_SNP [dm6]	A	T	7.692e^-4	0.832	UPSTREAM CG13937 DOWNSTREAM Aprt INTRON CG13937	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
3L	19929298	3L_19929298_SNP [dm3] 3L_19936198_SNP [dm6]	G	A	7.692e^-4	0.832	INTERGENIC
3L	2272738	3L_2272738_SNP [dm3] 3L_2272738_SNP [dm6]	T	A	7.692e^-4	0.832	UTR_5_PRIME yellow-g	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2404504	3L_2404504_SNP [dm3] 3L_2404504_SNP [dm6]	T	A	7.692e^-4	0.832	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2433836	3L_2433836_SNP [dm3] 3L_2433836_SNP [dm6]	G	C	7.692e^-4	0.832	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2721819	3L_2721819_SNP [dm3] 3L_2721819_SNP [dm6]	C	A	7.692e^-4	0.832	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3112160	3L_3112160_SNP [dm3] 3L_3112160_SNP [dm6]	C	T	7.692e^-4	0.832	NON_SYNONYMOUS_CODING CG45067 UPSTREAM CG45066
3L	3112290	3L_3112290_SNP [dm3] 3L_3112290_SNP [dm6]	C	T	7.692e^-4	0.832	SYNONYMOUS_CODING CG45067
3L	3112370	3L_3112370_SNP [dm3] 3L_3112370_SNP [dm6]	T	C	7.692e^-4	0.832	NON_SYNONYMOUS_CODING CG45067
3L	3112824	3L_3112824_SNP [dm3] 3L_3112824_SNP [dm6]	A	G	7.692e^-4	0.832	SYNONYMOUS_CODING CG45067
3L	323342	3L_323342_SNP [dm3] 3L_323342_SNP [dm6]	T	C	7.692e^-4	0.832	SYNONYMOUS_CODING CG32344	TF binding site mE1_TFBS_sens
3L	324259	3L_324259_SNP [dm3] 3L_324259_SNP [dm6]	G	A	7.692e^-4	0.832	SYNONYMOUS_CODING CG32344 DOWNSTREAM Atac3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	324727	3L_324727_SNP [dm3] 3L_324727_SNP [dm6]	A	C	7.692e^-4	0.832	UPSTREAM CG32344 DOWNSTREAM Atac3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	324756	3L_324756_SNP [dm3] 3L_324756_SNP [dm6]	G	C	7.692e^-4	0.832	UPSTREAM CG32344 DOWNSTREAM Atac3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3589272	3L_3589272_SNP [dm3] 3L_3589272_SNP [dm6]	T	C	7.692e^-4	0.832	INTRON Eip63E
3L	5317669	3L_5317669_SNP [dm3] 3L_5324569_SNP [dm6]	C	G	7.692e^-4	0.832	INTERGENIC
3L	5634534	3L_5634534_SNP [dm3] 3L_5641434_SNP [dm6]	A	C	7.692e^-4	0.832	UPSTREAM Blimp-1 INTRON Blimp-1
3L	5643547	3L_5643547_SNP [dm3] 3L_5650447_SNP [dm6]	G	T	7.692e^-4	0.832	UTR_3_PRIME Blimp-1
3L	5733037	3L_5733037_SNP [dm3] 3L_5739937_SNP [dm6]	T	C	7.692e^-4	0.832	INTRON sif
3L	5733049	3L_5733049_SNP [dm3] 3L_5739949_SNP [dm6]	T	A	7.692e^-4	0.832	INTRON sif
3L	5799024	3L_5799024_SNP [dm3] 3L_5805924_SNP [dm6]	A	G	7.692e^-4	0.832	SYNONYMOUS_CODING S6k DOWNSTREAM CG42272	TF binding site BDTNP1_TFBS_dl
3L	6769537	3L_6769537_SNP [dm3] 3L_6776437_SNP [dm6]	G	C	7.692e^-4	0.832	INTERGENIC
3L	7827111	3L_7827111_SNP [dm3] 3L_7834011_SNP [dm6]	T	C	7.692e^-4	0.832	UPSTREAM Pdp1 INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7827112	3L_7827112_SNP [dm3] 3L_7834012_SNP [dm6]	C	T	7.692e^-4	0.832	UPSTREAM Pdp1 INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	8382436	3L_8382436_SNP [dm3] 3L_8389336_SNP [dm6]	C	T	7.692e^-4	0.832	SYNONYMOUS_CODING ImpE1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	8383446	3L_8383446_SNP [dm3] 3L_8390346_SNP [dm6]	C	T	7.692e^-4	0.832	UTR_3_PRIME ImpE1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8739473	3L_8739473_DEL [dm3] 3L_8746373_DEL [dm6]	GTGTGA	G	7.692e^-4	0.832	INTERGENIC	regulatory region REDfly_CRMs
3L	9084312	3L_9084312_SNP [dm3] 3L_9091212_SNP [dm6]	G	C	7.692e^-4	0.832	SYNONYMOUS_CODING Tequila
3R	10367946	3R_10367946_SNP [dm3] 3R_14542224_SNP [dm6]	T	A	7.692e^-4	0.832	INTRON Pde6
3R	10924226	3R_10924226_SNP [dm3] 3R_15098504_SNP [dm6]	G	A	7.692e^-4	0.832	SYNONYMOUS_CODING CG42788
3R	11398169	3R_11398169_SNP [dm3] 3R_15572447_SNP [dm6]	C	T	7.692e^-4	0.832	INTERGENIC
3R	11398173	3R_11398173_SNP [dm3] 3R_15572451_SNP [dm6]	A	G	7.692e^-4	0.832	INTERGENIC
3R	11398187	3R_11398187_INS [dm3] 3R_15572465_INS [dm6]	A	AT	7.692e^-4	0.832	INTERGENIC
3R	11442278	3R_11442278_DEL [dm3] 3R_15616556_DEL [dm6]	TGTAT	T	7.692e^-4	0.832	INTERGENIC
3R	13334302	3R_13334302_SNP [dm3] 3R_17508580_SNP [dm6]	T	C	7.692e^-4	0.832	INTERGENIC
3R	13334599	3R_13334599_SNP [dm3] 3R_17508877_SNP [dm6]	C	A	7.692e^-4	0.832	INTERGENIC
3R	13608455	3R_13608455_SNP [dm3] 3R_17782733_SNP [dm6]	C	G	7.692e^-4	0.832	SYNONYMOUS_CODING CG43102 UTR_5_PRIME CG43102	TF binding site mE1_TFBS_cad
3R	13642247	3R_13642247_SNP [dm3] 3R_17816525_SNP [dm6]	C	T	7.692e^-4	0.832	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14062440	3R_14062440_SNP [dm3] 3R_18236718_SNP [dm6]	A	C	7.692e^-4	0.832	SYNONYMOUS_CODING repo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14062911	3R_14062911_SNP [dm3] 3R_18237189_SNP [dm6]	T	C	7.692e^-4	0.832	SYNONYMOUS_CODING repo	TF binding site mE1_TFBS_chinmo
3R	14062950	3R_14062950_SNP [dm3] 3R_18237228_SNP [dm6]	A	G	7.692e^-4	0.832	SYNONYMOUS_CODING repo	TF binding site mE1_TFBS_chinmo
3R	14574783	3R_14574783_SNP [dm3] 3R_18749061_SNP [dm6]	T	C	7.692e^-4	0.832	SYNONYMOUS_CODING gwl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14786624	3R_14786624_SNP [dm3] 3R_18960902_SNP [dm6]	C	T	7.692e^-4	0.832	INTRON CG42613 & 1 other
3R	16237420	3R_16237420_SNP [dm3] 3R_20411698_SNP [dm6]	C	T	7.692e^-4	0.832	INTRON Gfrl
3R	16584697	3R_16584697_SNP [dm3] 3R_20758975_SNP [dm6]	T	C	7.692e^-4	0.832	SPLICE_SITE_REGION CG31195 INTRON Syp & 1 other
3R	16643653	3R_16643653_SNP [dm3] 3R_20817931_SNP [dm6]	G	A	7.692e^-4	0.832	INTRON CG17270
3R	16644355	3R_16644355_SNP [dm3] 3R_20818633_SNP [dm6]	T	A	7.692e^-4	0.832	DOWNSTREAM CG17271 INTRON CG17270
3R	16995155	3R_16995155_SNP [dm3] 3R_21169433_SNP [dm6]	A	T	7.692e^-4	0.832	INTRON SNF4Agamma
3R	17083156	3R_17083156_SNP [dm3] 3R_21257434_SNP [dm6]	C	A	7.692e^-4	0.832	INTRON ETHR
3R	17652028	3R_17652028_SNP [dm3] 3R_21826306_SNP [dm6]	G	A	7.692e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17652265	3R_17652265_SNP [dm3] 3R_21826543_SNP [dm6]	C	A	7.692e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	17993285	3R_17993285_SNP [dm3] 3R_22167563_SNP [dm6]	A	G	7.692e^-4	0.832	INTRON SKIP	TF binding site mE1_TFBS_Kr
3R	18175843	3R_18175843_SNP [dm3] 3R_22350121_SNP [dm6]	T	G	7.692e^-4	0.832	INTERGENIC
3R	18458281	3R_18458281_SNP [dm3] 3R_22632559_SNP [dm6]	T	C	7.692e^-4	0.832	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18740240	3R_18740240_SNP [dm3] 3R_22914518_SNP [dm6]	A	T	7.692e^-4	0.832	INTRON klg
3R	18844509	3R_18844509_INS [dm3] 3R_23018787_INS [dm6]	T	TAT	7.692e^-4	0.832	INTERGENIC
3R	18844544	3R_18844544_DEL [dm3] 3R_23018822_DEL [dm6]	TAGGAT	T	7.692e^-4	0.832	INTERGENIC
3R	18844560	3R_18844560_SNP [dm3] 3R_23018838_SNP [dm6]	A	G	7.692e^-4	0.832	INTERGENIC
3R	18844841	3R_18844841_SNP [dm3] 3R_23019119_SNP [dm6]	A	G	7.692e^-4	0.832	INTERGENIC
3R	1901946	3R_1901946_SNP [dm3] 3R_6076224_SNP [dm6]	C	T	7.692e^-4	0.832	DOWNSTREAM Or83c INTERGENIC
3R	19468890	3R_19468890_SNP [dm3] 3R_23643168_SNP [dm6]	T	G	7.692e^-4	0.832	INTRON CG31145
3R	20003805	3R_20003805_SNP [dm3] 3R_24178083_SNP [dm6]	T	A	7.692e^-4	0.832	INTRON CG13606
3R	20003836	3R_20003836_SNP [dm3] 3R_24178114_SNP [dm6]	C	A	7.692e^-4	0.832	INTRON CG13606
3R	2013104	3R_2013104_SNP [dm3] 3R_6187382_SNP [dm6]	A	G	7.692e^-4	0.832	UTR_5_PRIME NPFR
3R	21894651	3R_21894651_DEL [dm3] 3R_26068929_DEL [dm6]	GCCG	G	7.692e^-4	0.832	INTERGENIC
3R	22750793	3R_22750793_SNP [dm3] 3R_26925071_SNP [dm6]	T	G	7.692e^-4	0.832	UTR_5_PRIME sda
3R	24825380	3R_24825380_SNP [dm3] 3R_28999658_SNP [dm6]	T	G	7.692e^-4	0.832	INTRON wat
3R	25600556	3R_25600556_SNP [dm3] 3R_29774834_SNP [dm6]	T	A	7.692e^-4	0.832	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25746067	3R_25746067_SNP [dm3] 3R_29920345_SNP [dm6]	G	A	7.692e^-4	0.832	UPSTREAM trp INTERGENIC
3R	26402604	3R_26402604_SNP [dm3] 3R_30576882_SNP [dm6]	C	A	7.692e^-4	0.832	DOWNSTREAM tmod INTRON tmod
3R	26423491	3R_26423491_SNP [dm3] 3R_30597769_SNP [dm6]	G	A	7.692e^-4	0.832	SYNONYMOUS_CODING CG31019 INTRON CG2246	TF binding site mE1_TFBS_sens
3R	26441267	3R_26441267_SNP [dm3] 3R_30615545_SNP [dm6]	G	A	7.692e^-4	0.832	DOWNSTREAM CR45571 INTERGENIC
3R	26733307	3R_26733307_SNP [dm3] 3R_30907585_SNP [dm6]	T	A	7.692e^-4	0.832	INTERGENIC
3R	26735248	3R_26735248_SNP [dm3] 3R_30909526_SNP [dm6]	T	C	7.692e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26739374	3R_26739374_SNP [dm3] 3R_30913652_SNP [dm6]	G	A	7.692e^-4	0.832	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26739413	3R_26739413_INS [dm3] 3R_30913691_INS [dm6]	G	GTCAGAT	7.692e^-4	0.832	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26739417	3R_26739417_DEL [dm3] 3R_30913695_DEL [dm6]	TAGAAAT	T	7.692e^-4	0.832	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26739425	3R_26739425_SNP [dm3] 3R_30913703_SNP [dm6]	C	A	7.692e^-4	0.832	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26739474	3R_26739474_SNP [dm3] 3R_30913752_SNP [dm6]	T	A	7.692e^-4	0.832	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26739620	3R_26739620_SNP [dm3] 3R_30913898_SNP [dm6]	C	T	7.692e^-4	0.832	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26740167	3R_26740167_SNP [dm3] 3R_30914445_SNP [dm6]	A	G	7.692e^-4	0.832	INTRON Ptx1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26742929	3R_26742929_SNP [dm3] 3R_30917207_SNP [dm6]	T	A	7.692e^-4	0.832	INTRON Ptx1	TF binding site mE1_TFBS_cad
3R	26745530	3R_26745530_INS [dm3] 3R_30919808_INS [dm6]	T	TGCAATTAAT	7.692e^-4	0.832	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	26745534	3R_26745534_SNP [dm3] 3R_30919812_SNP [dm6]	A	T	7.692e^-4	0.832	INTRON Ptx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	26747691	3R_26747691_SNP [dm3] 3R_30921969_SNP [dm6]	C	T	7.692e^-4	0.832	INTRON Ptx1 EXON CR44041	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26747824	3R_26747824_SNP [dm3] 3R_30922102_SNP [dm6]	A	G	7.692e^-4	0.832	INTRON Ptx1 EXON CR44041	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	27432825	3R_27432825_SNP [dm3] 3R_31607103_SNP [dm6]	G	A	7.692e^-4	0.832	INTRON CycG	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7742545	3R_7742545_INS [dm3] 3R_11916823_INS [dm6]	A	ATA	7.692e^-4	0.832	INTRON Cad87A
3R	7744404	3R_7744404_SNP [dm3] 3R_11918682_SNP [dm6]	A	T	7.692e^-4	0.832	INTRON Cad87A
X	10007093	X_10007093_SNP [dm3] X_10113060_SNP [dm6]	T	C	7.692e^-4	0.832	INTRON RhoU	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA
X	13407155	X_13407155_SNP [dm3] X_13513122_SNP [dm6]	A	C	7.692e^-4	0.832	INTRON Neto
X	13415483	X_13415483_SNP [dm3] X_13521450_SNP [dm6]	T	C	7.692e^-4	0.832	INTRON Neto
X	13870931	X_13870931_SNP [dm3] X_13976898_SNP [dm6]	T	C	7.692e^-4	0.832	INTRON mamo
X	13870950	X_13870950_INS [dm3] X_13976917_INS [dm6]	T	TGGATGTG	7.692e^-4	0.832	INTRON mamo
X	13870952	X_13870952_DEL [dm3] X_13976919_DEL [dm6]	AGTCACTGTTCACAT...	A	7.692e^-4	0.832	INTRON mamo
X	13872538	X_13872538_SNP [dm3] X_13978505_SNP [dm6]	G	A	7.692e^-4	0.832	INTRON mamo
X	14285034	X_14285034_SNP [dm3] X_14391001_SNP [dm6]	A	G	7.692e^-4	0.832	INTRON dpr8	TF binding site BDTNP1_TFBS_twi
X	14285088	X_14285088_INS [dm3] X_14391055_INS [dm6]	C	GCGGTTATAAATCA...	7.692e^-4	0.832	INTRON dpr8	TF binding site BDTNP1_TFBS_twi
X	14285188	X_14285188_SNP [dm3] X_14391155_SNP [dm6]	G	A	7.692e^-4	0.832	INTRON dpr8	TF binding site BDTNP1_TFBS_twi
X	14285789	X_14285789_SNP [dm3] X_14391756_SNP [dm6]	C	T	7.692e^-4	0.832	INTRON dpr8
X	14286006	X_14286006_SNP [dm3] X_14391973_SNP [dm6]	A	C	7.692e^-4	0.832	INTRON dpr8
X	14286135	X_14286135_SNP [dm3] X_14392102_SNP [dm6]	C	A	7.692e^-4	0.832	INTRON dpr8
X	14286143	X_14286143_SNP [dm3] X_14392110_SNP [dm6]	T	C	7.692e^-4	0.832	INTRON dpr8
X	14748861	X_14748861_SNP [dm3] X_14854828_SNP [dm6]	T	C	7.692e^-4	0.832	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad
X	15188540	X_15188540_SNP [dm3] X_15294507_SNP [dm6]	A	C	7.692e^-4	0.832	SYNONYMOUS_CODING CG5877
X	16031650	X_16031650_SNP [dm3] X_16137617_SNP [dm6]	T	G	7.692e^-4	0.832	INTRON disco-r
X	16289181	X_16289181_SNP [dm3] X_16395148_SNP [dm6]	T	G	7.692e^-4	0.832	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17755516	X_17755516_SNP [dm3] X_17861483_SNP [dm6]	C	G	7.692e^-4	0.832	NON_SYNONYMOUS_CODING CG6769 UPSTREAM Arp8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19991378	X_19991378_SNP [dm3] X_20097345_SNP [dm6]	G	A	7.692e^-4	0.832	UPSTREAM CG42581 INTERGENIC
X	20577938	X_20577938_SNP [dm3] X_20706911_SNP [dm6]	G	T	7.692e^-4	0.832	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
X	20737880	X_20737880_SNP [dm3] X_20866853_SNP [dm6]	A	C	7.692e^-4	0.832	INTRON shakB
X	20740524	X_20740524_SNP [dm3] X_20869497_SNP [dm6]	T	G	7.692e^-4	0.832	UPSTREAM CG1314 INTRON shakB
X	20740528	X_20740528_SNP [dm3] X_20869501_SNP [dm6]	T	G	7.692e^-4	0.832	UPSTREAM CG1314 INTRON shakB
X	2416949	X_2416949_SNP [dm3] X_2522916_SNP [dm6]	T	A	7.692e^-4	0.832	INTRON trol
X	2416961	X_2416961_SNP [dm3] X_2522928_SNP [dm6]	T	G	7.692e^-4	0.832	INTRON trol
X	2703800	X_2703800_SNP [dm3] X_2809767_SNP [dm6]	T	A	7.692e^-4	0.832	UPSTREAM CG12498 INTRON kirre
X	2961724	X_2961724_SNP [dm3] X_3067691_SNP [dm6]	A	G	7.692e^-4	0.832	UPSTREAM CG4116 INTRON kirre
X	3914865	X_3914865_SNP [dm3] X_4020832_SNP [dm6]	G	A	7.692e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	4072934	X_4072934_SNP [dm3] X_4178901_SNP [dm6]	G	C	7.692e^-4	0.832	INTRON Fas2	TF binding site mE1_TFBS_HSA
X	4112858	X_4112858_SNP [dm3] X_4218825_SNP [dm6]	C	T	7.692e^-4	0.832	SYNONYMOUS_CODING CG15570	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4590553	X_4590553_SNP [dm3] X_4696520_SNP [dm6]	A	G	7.692e^-4	0.832	INTRON ctp
X	6264771	X_6264771_SNP [dm3] X_6370738_SNP [dm6]	T	C	7.692e^-4	0.832	UTR_3_PRIME Marf DOWNSTREAM PpV EXON CR44816
X	6688958	X_6688958_SNP [dm3] X_6794925_SNP [dm6]	C	T	7.692e^-4	0.832	INTRON C3G	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	6801860	X_6801860_SNP [dm3] X_6907827_SNP [dm6]	A	G	7.692e^-4	0.832	UPSTREAM CG14431 INTERGENIC
X	6801908	X_6801908_SNP [dm3] X_6907875_SNP [dm6]	A	C	7.692e^-4	0.832	UPSTREAM CG14431 INTERGENIC
X	6801915	X_6801915_SNP [dm3] X_6907882_SNP [dm6]	T	C	7.692e^-4	0.832	UPSTREAM CG14431 INTERGENIC
X	6801961	X_6801961_SNP [dm3] X_6907928_SNP [dm6]	T	G	7.692e^-4	0.832	UPSTREAM CG14431 INTERGENIC
X	6801966	X_6801966_INS [dm3] X_6907933_INS [dm6]	C	CTA	7.692e^-4	0.832	UPSTREAM CG14431 INTERGENIC
X	6801977	X_6801977_DEL [dm3] X_6907944_DEL [dm6]	GCG	A	7.692e^-4	0.832	UPSTREAM CG14431 INTERGENIC
X	6802033	X_6802033_SNP [dm3] X_6908000_SNP [dm6]	T	C	7.692e^-4	0.832	UPSTREAM CG14431 INTERGENIC
X	6802036	X_6802036_SNP [dm3] X_6908003_SNP [dm6]	A	C	7.692e^-4	0.832	UPSTREAM CG14431 INTERGENIC
X	6802078	X_6802078_SNP [dm3] X_6908045_SNP [dm6]	G	T	7.692e^-4	0.832	UPSTREAM CG14431 INTERGENIC
X	7229757	X_7229757_SNP [dm3] X_7335724_SNP [dm6]	A	T	7.692e^-4	0.832	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	7440242	X_7440242_SNP [dm3] X_7546209_SNP [dm6]	A	G	7.692e^-4	0.832	INTRON CG32719
X	7873656	X_7873656_SNP [dm3] X_7979623_SNP [dm6]	A	T	7.692e^-4	0.832	INTRON sn	TF binding site mE1_TFBS_HSA
X	7976429	X_7976429_SNP [dm3] X_8082396_SNP [dm6]	G	T	7.692e^-4	0.832	UPSTREAM CG2254 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8101274	X_8101274_SNP [dm3] X_8207241_SNP [dm6]	G	T	7.692e^-4	0.832	INTRON sdt
X	9204619	X_9204619_SNP [dm3] X_9310586_SNP [dm6]	T	G	7.692e^-4	0.832	INTERGENIC
2L	13249137	2L_13249137_SNP [dm3] 2L_13249137_SNP [dm6]	T	C	8.114e^-4	0.832	NON_SYNONYMOUS_CODING CG16820
2L	16039675	2L_16039675_INS [dm3] 2L_16039675_INS [dm6]	A	AGTA	8.114e^-4	0.832	UTR_3_PRIME beat-Ic	TF binding site mE1_TFBS_cad
2L	16039677	2L_16039677_SNP [dm3] 2L_16039677_SNP [dm6]	C	G	8.114e^-4	0.832	UTR_3_PRIME beat-Ic	TF binding site mE1_TFBS_cad
2L	2877979	2L_2877979_SNP [dm3] 2L_2877979_SNP [dm6]	G	A	8.114e^-4	0.832	SYNONYMOUS_CODING Prx6005 UPSTREAM CG31950 DOWNSTREAM CG8814	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	10209266	2R_10209266_SNP [dm3] 2R_14321761_SNP [dm6]	G	T	8.114e^-4	0.832	INTRON Shroom
2R	10209275	2R_10209275_SNP [dm3] 2R_14321770_SNP [dm6]	C	T	8.114e^-4	0.832	INTRON Shroom
2R	10229304	2R_10229304_SNP [dm3] 2R_14341799_SNP [dm6]	A	G	8.114e^-4	0.832	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_dl
2R	10229307	2R_10229307_SNP [dm3] 2R_14341802_SNP [dm6]	C	G	8.114e^-4	0.832	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_dl
2R	10917834	2R_10917834_SNP [dm3] 2R_15030329_SNP [dm6]	T	C	8.114e^-4	0.832	INTRON hbs	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	10925981	2R_10925981_SNP [dm3] 2R_15038476_SNP [dm6]	A	C	8.114e^-4	0.832	INTRON hbs
2R	11865762	2R_11865762_SNP [dm3] 2R_15978257_SNP [dm6]	G	A	8.114e^-4	0.832	SYNONYMOUS_CODING Strn-Mlck
2R	11927611	2R_11927611_SNP [dm3] 2R_16040106_SNP [dm6]	T	A	8.114e^-4	0.832	INTRON SP2353	TF binding site mE1_TFBS_cad
2R	11927991	2R_11927991_SNP [dm3] 2R_16040486_SNP [dm6]	G	A	8.114e^-4	0.832	INTRON SP2353	TF binding site mE1_TFBS_cad
2R	12157235	2R_12157235_SNP [dm3] 2R_16269730_SNP [dm6]	T	A	8.114e^-4	0.832	INTRON Khc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12157238	2R_12157238_SNP [dm3] 2R_16269733_SNP [dm6]	A	G	8.114e^-4	0.832	INTRON Khc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12157239	2R_12157239_SNP [dm3] 2R_16269734_SNP [dm6]	A	C	8.114e^-4	0.832	INTRON Khc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12157285	2R_12157285_SNP [dm3] 2R_16269780_SNP [dm6]	T	C	8.114e^-4	0.832	INTRON Khc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12187535	2R_12187535_SNP [dm3] 2R_16300030_SNP [dm6]	T	G	8.114e^-4	0.832	DOWNSTREAM CR45232 INTERGENIC
2R	14112335	2R_14112335_SNP [dm3] 2R_18224830_SNP [dm6]	G	A	8.114e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14119891	2R_14119891_SNP [dm3] 2R_18232386_SNP [dm6]	C	A	8.114e^-4	0.832	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	14120004	2R_14120004_SNP [dm3] 2R_18232499_SNP [dm6]	A	T	8.114e^-4	0.832	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	14586349	2R_14586349_SNP [dm3] 2R_18698844_SNP [dm6]	A	G	8.114e^-4	0.832	INTRON Sik3
2R	14666213	2R_14666213_SNP [dm3] 2R_18778708_SNP [dm6]	T	C	8.114e^-4	0.832	INTERGENIC
2R	14666215	2R_14666215_SNP [dm3] 2R_18778710_SNP [dm6]	A	C	8.114e^-4	0.832	INTERGENIC
2R	14666312	2R_14666312_SNP [dm3] 2R_18778807_SNP [dm6]	G	A	8.114e^-4	0.832	INTERGENIC
2R	16430660	2R_16430660_SNP [dm3] 2R_20543155_SNP [dm6]	A	G	8.114e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16625778	2R_16625778_SNP [dm3] 2R_20738273_SNP [dm6]	G	T	8.114e^-4	0.832	INTRON dpr
2R	16748292	2R_16748292_SNP [dm3] 2R_20860787_SNP [dm6]	A	G	8.114e^-4	0.832	INTERGENIC
2R	17036391	2R_17036391_SNP [dm3] 2R_21148886_SNP [dm6]	G	T	8.114e^-4	0.832	UTR_3_PRIME CG30389 UPSTREAM CG15657
2R	17036735	2R_17036735_DEL [dm3] 2R_21149230_DEL [dm6]	TAATTCAT	T	8.114e^-4	0.832	UTR_3_PRIME CG30389	TF binding site mE1_TFBS_chinmo
2R	17659375	2R_17659375_SNP [dm3] 2R_21771870_SNP [dm6]	A	G	8.114e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	17719209	2R_17719209_SNP [dm3] 2R_21831704_SNP [dm6]	T	C	8.114e^-4	0.832	UPSTREAM CG13492 DOWNSTREAM CG34040 INTERGENIC
2R	17795514	2R_17795514_SNP [dm3] 2R_21908009_SNP [dm6]	C	G	8.114e^-4	0.832	INTRON Fili
2R	18622017	2R_18622017_SNP [dm3] 2R_22734512_SNP [dm6]	G	A	8.114e^-4	0.832	INTRON jbug
2R	18622026	2R_18622026_SNP [dm3] 2R_22734521_SNP [dm6]	T	A	8.114e^-4	0.832	INTRON jbug
2R	18622033	2R_18622033_SNP [dm3] 2R_22734528_SNP [dm6]	A	C	8.114e^-4	0.832	INTRON jbug
2R	18630975	2R_18630975_SNP [dm3] 2R_22743470_SNP [dm6]	G	T	8.114e^-4	0.832	UTR_3_PRIME CG42260	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18631020	2R_18631020_SNP [dm3] 2R_22743515_SNP [dm6]	T	G	8.114e^-4	0.832	UTR_3_PRIME CG42260	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18944608	2R_18944608_SNP [dm3] 2R_23057085_SNP [dm6]	T	C	8.114e^-4	0.832	INTRON CG44252
2R	18944612	2R_18944612_SNP [dm3] 2R_23057089_SNP [dm6]	T	A	8.114e^-4	0.832	INTRON CG44252
2R	18944616	2R_18944616_SNP [dm3] 2R_23057093_SNP [dm6]	T	A	8.114e^-4	0.832	INTRON CG44252
2R	19278519	2R_19278519_SNP [dm3] 2R_23390996_SNP [dm6]	A	C	8.114e^-4	0.832	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19558035	2R_19558035_SNP [dm3] 2R_23670512_SNP [dm6]	G	A	8.114e^-4	0.832	INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19558038	2R_19558038_SNP [dm3] 2R_23670515_SNP [dm6]	C	T	8.114e^-4	0.832	INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19558039	2R_19558039_DEL [dm3] 2R_23670516_DEL [dm6]	AGGGGT	A	8.114e^-4	0.832	INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19558083	2R_19558083_SNP [dm3] 2R_23670560_SNP [dm6]	C	A	8.114e^-4	0.832	INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19615316	2R_19615316_SNP [dm3] 2R_23727793_SNP [dm6]	C	T	8.114e^-4	0.832	INTRON Sesn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19615339	2R_19615339_SNP [dm3] 2R_23727816_SNP [dm6]	A	T	8.114e^-4	0.832	INTRON Sesn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19789367	2R_19789367_SNP [dm3] 2R_23901844_SNP [dm6]	G	C	8.114e^-4	0.832	NON_SYNONYMOUS_CODING Lpt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4712261	2R_4712261_SNP [dm3] 2R_8824756_SNP [dm6]	T	A	8.114e^-4	0.832	INTRON sns
2R	4712496	2R_4712496_SNP [dm3] 2R_8824991_SNP [dm6]	G	C	8.114e^-4	0.832	INTRON sns
2R	5060406	2R_5060406_SNP [dm3] 2R_9172901_SNP [dm6]	A	G	8.114e^-4	0.832	SYNONYMOUS_CODING Rme-8	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6124988	2R_6124988_SNP [dm3] 2R_10237483_SNP [dm6]	G	A	8.114e^-4	0.832	UPSTREAM Hdc & 1 other DOWNSTREAM CR45265 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	6234227	2R_6234227_SNP [dm3] 2R_10346722_SNP [dm6]	A	G	8.114e^-4	0.832	INTRON CG42732
2R	6565539	2R_6565539_SNP [dm3] 2R_10678034_SNP [dm6]	A	T	8.114e^-4	0.832	INTRON stan
2R	7459631	2R_7459631_SNP [dm3] 2R_11572126_SNP [dm6]	A	G	8.114e^-4	0.832	INTERGENIC
2R	9433994	2R_9433994_SNP [dm3] 2R_13546489_SNP [dm6]	G	A	8.114e^-4	0.832	INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	9434003	2R_9434003_SNP [dm3] 2R_13546498_SNP [dm6]	T	C	8.114e^-4	0.832	INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	9434007	2R_9434007_SNP [dm3] 2R_13546502_SNP [dm6]	A	G	8.114e^-4	0.832	INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	10111211	3L_10111211_SNP [dm3] 3L_10118111_SNP [dm6]	T	A	8.114e^-4	0.832	INTRON dpr6
3L	10111237	3L_10111237_DEL [dm3] 3L_10118137_DEL [dm6]	TATACCT	T	8.114e^-4	0.832	INTRON dpr6
3L	10373421	3L_10373421_SNP [dm3] 3L_10380321_SNP [dm6]	C	T	8.114e^-4	0.832	INTERGENIC
3L	11339739	3L_11339739_SNP [dm3] 3L_11346639_SNP [dm6]	C	T	8.114e^-4	0.832	INTERGENIC
3L	11410529	3L_11410529_SNP [dm3] 3L_11417429_SNP [dm6]	T	C	8.114e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11410606	3L_11410606_SNP [dm3] 3L_11417506_SNP [dm6]	G	T	8.114e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11410634	3L_11410634_SNP [dm3] 3L_11417534_SNP [dm6]	T	C	8.114e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11410635	3L_11410635_SNP [dm3] 3L_11417535_SNP [dm6]	A	T	8.114e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11410639	3L_11410639_SNP [dm3] 3L_11417539_SNP [dm6]	A	T	8.114e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11410647	3L_11410647_DEL [dm3] 3L_11417547_DEL [dm6]	GG	G	8.114e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11410664	3L_11410664_DEL [dm3] 3L_11417564_DEL [dm6]	GCT	G	8.114e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11473802	3L_11473802_SNP [dm3] 3L_11480702_SNP [dm6]	T	C	8.114e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11475766	3L_11475766_SNP [dm3] 3L_11482666_SNP [dm6]	T	C	8.114e^-4	0.832	INTERGENIC
3L	12021651	3L_12021651_SNP [dm3] 3L_12028551_SNP [dm6]	A	G	8.114e^-4	0.832	DOWNSTREAM CR43994 INTRON rols
3L	12032158	3L_12032158_SNP [dm3] 3L_12039058_SNP [dm6]	C	T	8.114e^-4	0.832	INTRON rols	TF binding site mE1_TFBS_inv
3L	12497191	3L_12497191_SNP [dm3] 3L_12504091_SNP [dm6]	G	A	8.114e^-4	0.832	UPSTREAM vih & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12565514	3L_12565514_SNP [dm3] 3L_12572414_SNP [dm6]	C	T	8.114e^-4	0.832	NON_SYNONYMOUS_CODING sowah	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	12565546	3L_12565546_SNP [dm3] 3L_12572446_SNP [dm6]	T	A	8.114e^-4	0.832	UTR_5_PRIME sowah	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	12565614	3L_12565614_SNP [dm3] 3L_12572514_SNP [dm6]	T	C	8.114e^-4	0.832	UTR_5_PRIME sowah	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	13919143	3L_13919143_SNP [dm3] 3L_13926043_SNP [dm6]	A	T	8.114e^-4	0.832	NON_SYNONYMOUS_CODING CG8833 UPSTREAM Rgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13919144	3L_13919144_SNP [dm3] 3L_13926044_SNP [dm6]	G	C	8.114e^-4	0.832	SYNONYMOUS_CODING CG8833 UPSTREAM Rgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13919253	3L_13919253_SNP [dm3] 3L_13926153_SNP [dm6]	C	T	8.114e^-4	0.832	NON_SYNONYMOUS_CODING CG8833 UPSTREAM Rgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14007179	3L_14007179_SNP [dm3] 3L_14014079_SNP [dm6]	G	C	8.114e^-4	0.832	NON_SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14007180	3L_14007180_SNP [dm3] 3L_14014080_SNP [dm6]	C	A	8.114e^-4	0.832	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1417103	3L_1417103_SNP [dm3] 3L_1417103_SNP [dm6]	A	C	8.114e^-4	0.832	SYNONYMOUS_CODING FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1439392	3L_1439392_SNP [dm3] 3L_1439392_SNP [dm6]	T	C	8.114e^-4	0.832	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da
3L	14547532	3L_14547532_SNP [dm3] 3L_14554432_SNP [dm6]	T	A	8.114e^-4	0.832	INTERGENIC
3L	14895898	3L_14895898_SNP [dm3] 3L_14902798_SNP [dm6]	A	G	8.114e^-4	0.832	INTERGENIC
3L	14895936	3L_14895936_SNP [dm3] 3L_14902836_SNP [dm6]	T	A	8.114e^-4	0.832	UPSTREAM DCX-EMAP INTERGENIC
3L	14896104	3L_14896104_INS [dm3] 3L_14903004_INS [dm6]	A	ATA	8.114e^-4	0.832	UPSTREAM DCX-EMAP INTERGENIC
3L	14896117	3L_14896117_SNP [dm3] 3L_14903017_SNP [dm6]	A	T	8.114e^-4	0.832	UPSTREAM DCX-EMAP INTERGENIC
3L	14896297	3L_14896297_SNP [dm3] 3L_14903197_SNP [dm6]	G	T	8.114e^-4	0.832	UPSTREAM DCX-EMAP INTERGENIC
3L	14896299	3L_14896299_SNP [dm3] 3L_14903199_SNP [dm6]	A	G	8.114e^-4	0.832	UPSTREAM DCX-EMAP INTERGENIC
3L	14896991	3L_14896991_SNP [dm3] 3L_14903891_SNP [dm6]	A	G	8.114e^-4	0.832	UTR_5_PRIME DCX-EMAP
3L	14914626	3L_14914626_INS [dm3] 3L_14921526_INS [dm6]	A	AA	8.114e^-4	0.832	UPSTREAM DCX-EMAP INTRON DCX-EMAP
3L	1674040	3L_1674040_SNP [dm3] 3L_1674040_SNP [dm6]	G	A	8.114e^-4	0.832	UPSTREAM CG7991 INTERGENIC
3L	16949712	3L_16949712_SNP [dm3] 3L_16956612_SNP [dm6]	C	A	8.114e^-4	0.832	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17127568	3L_17127568_SNP [dm3] 3L_17134468_SNP [dm6]	A	C	8.114e^-4	0.832	INTRON Rbp6
3L	18024702	3L_18024702_SNP [dm3] 3L_18031602_SNP [dm6]	G	A	8.114e^-4	0.832	INTRON Eip75B
3L	18026791	3L_18026791_SNP [dm3] 3L_18033691_SNP [dm6]	T	C	8.114e^-4	0.832	INTRON Eip75B
3L	18075994	3L_18075994_SNP [dm3] 3L_18082894_SNP [dm6]	G	A	8.114e^-4	0.832	INTRON CR43253	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1820364	3L_1820364_SNP [dm3] 3L_1820364_SNP [dm6]	A	T	8.114e^-4	0.832	INTRON GV1
3L	1872541	3L_1872541_SNP [dm3] 3L_1872541_SNP [dm6]	C	T	8.114e^-4	0.832	DOWNSTREAM CG13924 INTRON dre4	TF binding site mE1_TFBS_cad
3L	1872778	3L_1872778_SNP [dm3] 3L_1872778_SNP [dm6]	A	G	8.114e^-4	0.832	INTRON dre4	TF binding site mE1_TFBS_cad
3L	2006260	3L_2006260_SNP [dm3] 3L_2006260_SNP [dm6]	A	T	8.114e^-4	0.832	UPSTREAM CG42841 INTERGENIC
3L	20165740	3L_20165740_SNP [dm3] 3L_20172640_SNP [dm6]	C	A	8.114e^-4	0.832	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
3L	20165972	3L_20165972_SNP [dm3] 3L_20172872_SNP [dm6]	G	C	8.114e^-4	0.832	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
3L	20165973	3L_20165973_SNP [dm3] 3L_20172873_SNP [dm6]	C	G	8.114e^-4	0.832	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
3L	2265004	3L_2265004_SNP [dm3] 3L_2265004_SNP [dm6]	C	T	8.114e^-4	0.832	SYNONYMOUS_CODING ecd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3206995	3L_3206995_SNP [dm3] 3L_3206995_SNP [dm6]	A	G	8.114e^-4	0.832	UTR_3_PRIME CG32269 & 1 other UPSTREAM CG33160 INTRON gry	TF binding site mE1_TFBS_cad
3L	3560765	3L_3560765_SNP [dm3] 3L_3560765_SNP [dm6]	A	G	8.114e^-4	0.832	INTRON Eip63E	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	4416989	3L_4416989_SNP [dm3] 3L_4416989_SNP [dm6]	A	G	8.114e^-4	0.832	INTRON DOR
3L	5424849	3L_5424849_SNP [dm3] 3L_5431749_SNP [dm6]	T	G	8.114e^-4	0.832	INTRON CG34391	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5792367	3L_5792367_SNP [dm3] 3L_5799267_SNP [dm6]	G	T	8.114e^-4	0.832	UTR_3_PRIME S6k
3L	6350564	3L_6350564_SNP [dm3] 3L_6357464_SNP [dm6]	T	C	8.114e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7002421	3L_7002421_SNP [dm3] 3L_7009321_SNP [dm6]	T	C	8.114e^-4	0.832	INTRON Mp
3L	7002445	3L_7002445_SNP [dm3] 3L_7009345_SNP [dm6]	G	C	8.114e^-4	0.832	INTRON Mp
3L	8298640	3L_8298640_SNP [dm3] 3L_8305540_SNP [dm6]	T	A	8.114e^-4	0.832	SYNONYMOUS_CODING Gr66a DOWNSTREAM Sbp2
3L	8389760	3L_8389760_SNP [dm3] 3L_8396660_SNP [dm6]	A	T	8.114e^-4	0.832	INTRON CG7120	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8389790	3L_8389790_SNP [dm3] 3L_8396690_SNP [dm6]	T	A	8.114e^-4	0.832	INTRON CG7120	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9701386	3L_9701386_SNP [dm3] 3L_9708286_SNP [dm6]	T	C	8.114e^-4	0.832	SYNONYMOUS_CODING CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10147619	3R_10147619_SNP [dm3] 3R_14321897_SNP [dm6]	A	G	8.114e^-4	0.832	SYNONYMOUS_CODING Afti	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12076920	3R_12076920_SNP [dm3] 3R_16251198_SNP [dm6]	C	G	8.114e^-4	0.832	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12076939	3R_12076939_SNP [dm3] 3R_16251217_SNP [dm6]	A	C	8.114e^-4	0.832	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14237039	3R_14237039_SNP [dm3] 3R_18411317_SNP [dm6]	T	A	8.114e^-4	0.832	SYNONYMOUS_CODING CG10864 INTRON CG31122	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14262204	3R_14262204_SNP [dm3] 3R_18436482_SNP [dm6]	C	A	8.114e^-4	0.832	INTRON fru	TF binding site mE1_TFBS_HSA
3R	14780797	3R_14780797_SNP [dm3] 3R_18955075_SNP [dm6]	G	T	8.114e^-4	0.832	INTRON CG42613 & 1 other
3R	16397783	3R_16397783_SNP [dm3] 3R_20572061_SNP [dm6]	T	C	8.114e^-4	0.832	SYNONYMOUS_CODING CG5191	TF binding site mE1_TFBS_chinmo
3R	16811653	3R_16811653_SNP [dm3] 3R_20985931_SNP [dm6]	C	T	8.114e^-4	0.832	UPSTREAM Calx DOWNSTREAM CG43446 INTRON Calx
3R	18458299	3R_18458299_SNP [dm3] 3R_22632577_SNP [dm6]	G	A	8.114e^-4	0.832	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18764294	3R_18764294_SNP [dm3] 3R_22938572_SNP [dm6]	C	T	8.114e^-4	0.832	INTRON klg
3R	19849563	3R_19849563_SNP [dm3] 3R_24023841_SNP [dm6]	A	T	8.114e^-4	0.832	INTRON KrT95D	TF binding site mE1_TFBS_HSA
3R	20499791	3R_20499791_SNP [dm3] 3R_24674069_SNP [dm6]	T	G	8.114e^-4	0.832	INTRON slo
3R	23197218	3R_23197218_SNP [dm3] 3R_27371496_SNP [dm6]	A	C	8.114e^-4	0.832	UTR_3_PRIME CG42534 DOWNSTREAM CG42534
3R	24190676	3R_24190676_SNP [dm3] 3R_28364954_SNP [dm6]	G	A	8.114e^-4	0.832	INTERGENIC
3R	25072877	3R_25072877_SNP [dm3] 3R_29247155_SNP [dm6]	C	A	8.114e^-4	0.832	SYNONYMOUS_CODING SP1029	TF binding site mE1_TFBS_cad
3R	25290840	3R_25290840_SNP [dm3] 3R_29465118_SNP [dm6]	C	G	8.114e^-4	0.832	INTRON Ptp99A
3R	26297128	3R_26297128_SNP [dm3] 3R_30471406_SNP [dm6]	T	C	8.114e^-4	0.832	INTRON PH4alphaEFB
3R	26297534	3R_26297534_SNP [dm3] 3R_30471812_SNP [dm6]	T	C	8.114e^-4	0.832	INTRON PH4alphaEFB
3R	26297737	3R_26297737_SNP [dm3] 3R_30472015_SNP [dm6]	C	G	8.114e^-4	0.832	INTRON PH4alphaEFB
3R	26297803	3R_26297803_SNP [dm3] 3R_30472081_SNP [dm6]	A	G	8.114e^-4	0.832	INTRON PH4alphaEFB
3R	26297815	3R_26297815_SNP [dm3] 3R_30472093_SNP [dm6]	A	T	8.114e^-4	0.832	INTRON PH4alphaEFB
3R	26618205	3R_26618205_SNP [dm3] 3R_30792483_SNP [dm6]	C	T	8.114e^-4	0.832	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
3R	26731970	3R_26731970_SNP [dm3] 3R_30906248_SNP [dm6]	T	G	8.114e^-4	0.832	INTERGENIC
3R	26834760	3R_26834760_SNP [dm3] 3R_31009038_SNP [dm6]	C	A	8.114e^-4	0.832	INTRON 5-HT7
3R	27386739	3R_27386739_SNP [dm3] 3R_31561017_SNP [dm6]	T	A	8.114e^-4	0.832	SYNONYMOUS_CODING nyo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8596884	3R_8596884_SNP [dm3] 3R_12771162_SNP [dm6]	A	G	8.114e^-4	0.832	INTRON beat-Vc
X	10959918	X_10959918_INS [dm3] X_11065885_INS [dm6]	T	TTCCATTTCCATTC...	8.114e^-4	0.832	UPSTREAM CG15203 EXON CR45614
X	10959939	X_10959939_SNP [dm3] X_11065906_SNP [dm6]	A	T	8.114e^-4	0.832	UPSTREAM CG15203 EXON CR45614
X	10959946	X_10959946_SNP [dm3] X_11065913_SNP [dm6]	C	G	8.114e^-4	0.832	UPSTREAM CG15203 EXON CR45614
X	10959947	X_10959947_SNP [dm3] X_11065914_SNP [dm6]	G	A	8.114e^-4	0.832	UPSTREAM CG15203 EXON CR45614
X	10959959	X_10959959_SNP [dm3] X_11065926_SNP [dm6]	T	C	8.114e^-4	0.832	UPSTREAM CG15203 EXON CR45614
X	10960118	X_10960118_SNP [dm3] X_11066085_SNP [dm6]	T	C	8.114e^-4	0.832	UPSTREAM CG15203 EXON CR45614
X	11203772	X_11203772_SNP [dm3] X_11309739_SNP [dm6]	G	T	8.114e^-4	0.832	INTRON Ir10a
X	11203776	X_11203776_SNP [dm3] X_11309743_SNP [dm6]	T	A	8.114e^-4	0.832	INTRON Ir10a
X	11842685	X_11842685_SNP [dm3] X_11948652_SNP [dm6]	A	G	8.114e^-4	0.832	SYNONYMOUS_CODING cac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13051724	X_13051724_SNP [dm3] X_13157691_SNP [dm6]	C	T	8.114e^-4	0.832	UTR_3_PRIME Bap60 DOWNSTREAM CG4332
X	13663685	X_13663685_SNP [dm3] X_13769652_SNP [dm6]	A	C	8.114e^-4	0.832	INTRON rdgB
X	13663697	X_13663697_SNP [dm3] X_13769664_SNP [dm6]	G	T	8.114e^-4	0.832	INTRON rdgB
X	13795494	X_13795494_SNP [dm3] X_13901461_SNP [dm6]	A	T	8.114e^-4	0.832	INTRON mamo
X	13870999	X_13870999_SNP [dm3] X_13976966_SNP [dm6]	G	A	8.114e^-4	0.832	INTRON mamo
X	13995802	X_13995802_SNP [dm3] X_14101769_SNP [dm6]	G	T	8.114e^-4	0.832	INTERGENIC
X	14253153	X_14253153_SNP [dm3] X_14359120_SNP [dm6]	C	T	8.114e^-4	0.832	INTRON dpr8
X	14254306	X_14254306_SNP [dm3] X_14360273_SNP [dm6]	A	T	8.114e^-4	0.832	INTRON dpr8
X	15160575	X_15160575_SNP [dm3] X_15266542_SNP [dm6]	T	A	8.114e^-4	0.832	INTERGENIC
X	15257235	X_15257235_SNP [dm3] X_15363202_SNP [dm6]	T	C	8.114e^-4	0.832	INTRON acj6
X	15257239	X_15257239_SNP [dm3] X_15363206_SNP [dm6]	C	T	8.114e^-4	0.832	INTRON acj6
X	15257308	X_15257308_SNP [dm3] X_15363275_SNP [dm6]	A	G	8.114e^-4	0.832	INTRON acj6
X	15257395	X_15257395_SNP [dm3] X_15363362_SNP [dm6]	A	G	8.114e^-4	0.832	INTRON acj6
X	15417481	X_15417481_SNP [dm3] X_15523448_SNP [dm6]	T	C	8.114e^-4	0.832	INTRON Ac13E
X	18815066	X_18815066_SNP [dm3] X_18921033_SNP [dm6]	A	C	8.114e^-4	0.832	INTERGENIC
X	19994668	X_19994668_SNP [dm3] X_20100635_SNP [dm6]	A	G	8.114e^-4	0.832	INTERGENIC	transposable element FlyBase
X	19994669	X_19994669_SNP [dm3] X_20100636_SNP [dm6]	G	A	8.114e^-4	0.832	INTERGENIC	transposable element FlyBase
X	19994677	X_19994677_SNP [dm3] X_20100644_SNP [dm6]	T	A	8.114e^-4	0.832	INTERGENIC	transposable element FlyBase
X	20465616	X_20465616_SNP [dm3] X_20594589_SNP [dm6]	A	G	8.114e^-4	0.832	INTRON RunxA
X	20465624	X_20465624_SNP [dm3] X_20594597_SNP [dm6]	A	G	8.114e^-4	0.832	INTRON RunxA
X	21069038	X_21069038_SNP [dm3] X_21198011_SNP [dm6]	G	C	8.114e^-4	0.832	INTERGENIC
X	21069040	X_21069040_SNP [dm3] X_21198013_SNP [dm6]	C	G	8.114e^-4	0.832	INTERGENIC
X	2437059	X_2437059_SNP [dm3] X_2543026_SNP [dm6]	C	G	8.114e^-4	0.832	INTRON trol	TF binding site BDTNP1_TFBS_twi
X	2437205	X_2437205_SNP [dm3] X_2543172_SNP [dm6]	A	G	8.114e^-4	0.832	INTRON trol	TF binding site BDTNP1_TFBS_twi
X	2752902	X_2752902_SNP [dm3] X_2858869_SNP [dm6]	A	G	8.114e^-4	0.832	INTRON kirre
X	2752949	X_2752949_SNP [dm3] X_2858916_SNP [dm6]	T	A	8.114e^-4	0.832	INTRON kirre
X	2753038	X_2753038_SNP [dm3] X_2859005_SNP [dm6]	A	T	8.114e^-4	0.832	INTRON kirre
X	2753457	X_2753457_SNP [dm3] X_2859424_SNP [dm6]	T	C	8.114e^-4	0.832	INTRON kirre
X	3944533	X_3944533_SNP [dm3] X_4050500_SNP [dm6]	A	G	8.114e^-4	0.832	INTERGENIC
X	6518522	X_6518522_SNP [dm3] X_6624489_SNP [dm6]	A	C	8.114e^-4	0.832	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6518558	X_6518558_SNP [dm3] X_6624525_SNP [dm6]	C	T	8.114e^-4	0.832	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6518568	X_6518568_SNP [dm3] X_6624535_SNP [dm6]	A	C	8.114e^-4	0.832	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6518572	X_6518572_SNP [dm3] X_6624539_SNP [dm6]	G	C	8.114e^-4	0.832	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6518573	X_6518573_SNP [dm3] X_6624540_SNP [dm6]	A	T	8.114e^-4	0.832	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6518593	X_6518593_SNP [dm3] X_6624560_SNP [dm6]	T	C	8.114e^-4	0.832	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6518595	X_6518595_SNP [dm3] X_6624562_SNP [dm6]	A	C	8.114e^-4	0.832	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6518596	X_6518596_SNP [dm3] X_6624563_SNP [dm6]	G	A	8.114e^-4	0.832	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6518623	X_6518623_SNP [dm3] X_6624590_SNP [dm6]	T	C	8.114e^-4	0.832	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	6682023	X_6682023_SNP [dm3] X_6787990_SNP [dm6]	C	T	8.114e^-4	0.832	NON_SYNONYMOUS_CODING C3G	TF binding site mE1_TFBS_chinmo
X	6682103	X_6682103_SNP [dm3] X_6788070_SNP [dm6]	C	T	8.114e^-4	0.832	NON_SYNONYMOUS_CODING C3G	TF binding site mE1_TFBS_chinmo
X	6689054	X_6689054_SNP [dm3] X_6795021_SNP [dm6]	T	G	8.114e^-4	0.832	INTRON C3G	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	7229672	X_7229672_SNP [dm3] X_7335639_SNP [dm6]	T	A	8.114e^-4	0.832	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	7229673	X_7229673_DEL [dm3] X_7335640_DEL [dm6]	AAAGGAACACAGACAAAAG...	A	8.114e^-4	0.832	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	7229711	X_7229711_SNP [dm3] X_7335678_SNP [dm6]	G	A	8.114e^-4	0.832	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	7229722	X_7229722_INS [dm3] X_7335689_INS [dm6]	T	TAT	8.114e^-4	0.832	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	7229726	X_7229726_SNP [dm3] X_7335693_SNP [dm6]	T	C	8.114e^-4	0.832	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	8101327	X_8101327_SNP [dm3] X_8207294_SNP [dm6]	C	T	8.114e^-4	0.832	INTRON sdt
X	8507805	X_8507805_SNP [dm3] X_8613772_SNP [dm6]	A	C	8.114e^-4	0.832	INTERGENIC
X	8507807	X_8507807_SNP [dm3] X_8613774_SNP [dm6]	T	A	8.114e^-4	0.832	INTERGENIC
X	8510636	X_8510636_SNP [dm3] X_8616603_SNP [dm6]	G	A	8.114e^-4	0.832	INTERGENIC
X	8510659	X_8510659_DEL [dm3] X_8616626_DEL [dm6]	TT	T	8.114e^-4	0.832	INTERGENIC
X	8510686	X_8510686_SNP [dm3] X_8616653_SNP [dm6]	T	A	8.114e^-4	0.832	INTERGENIC
X	8934665	X_8934665_SNP [dm3] X_9040632_SNP [dm6]	A	G	8.114e^-4	0.832	INTRON CR43836 & 1 other	TF binding site mE1_TFBS_bab1
2R	13620697	2R_13620697_SNP [dm3] 2R_17733192_SNP [dm6]	A	T	8.279e^-4	0.832	UPSTREAM CG34195 DOWNSTREAM CG4984 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8058543	X_8058543_DEL [dm3] X_8164510_DEL [dm6]	TCT	T	8.279e^-4	0.832	INTRON Or7a	TF binding site mE1_TFBS_chinmo
2L	1029693	2L_1029693_SNP [dm3] 2L_1029693_SNP [dm6]	A	C	9.220e^-4	0.832	INTRON IA-2
2L	1072466	2L_1072466_SNP [dm3] 2L_1072466_SNP [dm6]	G	C	9.220e^-4	0.832	INTRON S	TF binding site mE1_TFBS_sens
2L	1073164	2L_1073164_SNP [dm3] 2L_1073164_SNP [dm6]	G	A	9.220e^-4	0.832	INTRON S	TF binding site BDTNP1_TFBS_dl
2L	1073165	2L_1073165_SNP [dm3] 2L_1073165_SNP [dm6]	A	C	9.220e^-4	0.832	INTRON S	TF binding site BDTNP1_TFBS_dl
2L	13820357	2L_13820357_SNP [dm3] 2L_13820357_SNP [dm6]	C	T	9.220e^-4	0.832	UPSTREAM b DOWNSTREAM Sos INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	1453386	2L_1453386_SNP [dm3] 2L_1453386_SNP [dm6]	A	G	9.220e^-4	0.832	INTERGENIC
2L	1453406	2L_1453406_SNP [dm3] 2L_1453406_SNP [dm6]	G	T	9.220e^-4	0.832	INTERGENIC
2L	1956201	2L_1956201_SNP [dm3] 2L_1956201_SNP [dm6]	G	C	9.220e^-4	0.832	INTRON erm	regulatory region REDfly_CRMs TF binding site mE1_TFBS_GATAe
2L	5021574	2L_5021574_SNP [dm3] 2L_5021574_SNP [dm6]	G	C	9.220e^-4	0.832	INTRON vkg
2L	6087046	2L_6087046_SNP [dm3] 2L_6087046_SNP [dm6]	G	A	9.220e^-4	0.832	INTRON Kr-h1
2L	7380949	2L_7380949_SNP [dm3] 2L_7380949_SNP [dm6]	G	A	9.220e^-4	0.832	SYNONYMOUS_CODING ninaC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10320071	2R_10320071_SNP [dm3] 2R_14432566_SNP [dm6]	T	C	9.220e^-4	0.832	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	10320112	2R_10320112_SNP [dm3] 2R_14432607_SNP [dm6]	G	A	9.220e^-4	0.832	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10987494	2R_10987494_SNP [dm3] 2R_15099989_SNP [dm6]	C	G	9.220e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11964690	2R_11964690_SNP [dm3] 2R_16077185_SNP [dm6]	C	T	9.220e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12116801	2R_12116801_SNP [dm3] 2R_16229296_SNP [dm6]	C	G	9.220e^-4	0.832	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12554044	2R_12554044_SNP [dm3] 2R_16666539_SNP [dm6]	T	C	9.220e^-4	0.832	INTRON Picot	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12979634	2R_12979634_SNP [dm3] 2R_17092129_SNP [dm6]	T	G	9.220e^-4	0.832	NON_SYNONYMOUS_CODING CG6984 UPSTREAM Sply	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	12979733	2R_12979733_SNP [dm3] 2R_17092228_SNP [dm6]	A	G	9.220e^-4	0.832	SYNONYMOUS_CODING CG6984 UPSTREAM Sply	TF binding site mE1_TFBS_sens mE1_TFBS_Ubx
2R	13536713	2R_13536713_SNP [dm3] 2R_17649208_SNP [dm6]	G	T	9.220e^-4	0.832	SPLICE_SITE_REGION CCHa1-R INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13536735	2R_13536735_SNP [dm3] 2R_17649230_SNP [dm6]	A	C	9.220e^-4	0.832	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13537252	2R_13537252_SNP [dm3] 2R_17649747_SNP [dm6]	G	A	9.220e^-4	0.832	SYNONYMOUS_CODING CCHa1-R	TF binding site mE1_TFBS_HSA
2R	13539152	2R_13539152_SNP [dm3] 2R_17651647_SNP [dm6]	T	G	9.220e^-4	0.832	INTRON CCHa1-R	TF binding site mE1_TFBS_inv
2R	13539158	2R_13539158_SNP [dm3] 2R_17651653_SNP [dm6]	A	T	9.220e^-4	0.832	INTRON CCHa1-R	TF binding site mE1_TFBS_inv
2R	13539168	2R_13539168_SNP [dm3] 2R_17651663_SNP [dm6]	T	C	9.220e^-4	0.832	INTRON CCHa1-R	TF binding site mE1_TFBS_inv
2R	13539257	2R_13539257_SNP [dm3] 2R_17651752_SNP [dm6]	C	G	9.220e^-4	0.832	INTRON CCHa1-R	TF binding site mE1_TFBS_inv
2R	15790360	2R_15790360_SNP [dm3] 2R_19902855_SNP [dm6]	A	G	9.220e^-4	0.832	INTERGENIC
2R	15790363	2R_15790363_SNP [dm3] 2R_19902858_SNP [dm6]	G	A	9.220e^-4	0.832	INTERGENIC
2R	15890429	2R_15890429_SNP [dm3] 2R_20002924_SNP [dm6]	T	G	9.220e^-4	0.832	DOWNSTREAM CG16898 INTERGENIC
2R	15890485	2R_15890485_SNP [dm3] 2R_20002980_SNP [dm6]	C	T	9.220e^-4	0.832	DOWNSTREAM CG16898 INTERGENIC
2R	16367420	2R_16367420_SNP [dm3] 2R_20479915_SNP [dm6]	C	T	9.220e^-4	0.832	DOWNSTREAM CG12484 INTERGENIC
2R	16759800	2R_16759800_SNP [dm3] 2R_20872295_SNP [dm6]	T	C	9.220e^-4	0.832	INTRON Ipk1
2R	16759801	2R_16759801_SNP [dm3] 2R_20872296_SNP [dm6]	C	T	9.220e^-4	0.832	INTRON Ipk1
2R	16826840	2R_16826840_SNP [dm3] 2R_20939335_SNP [dm6]	A	C	9.220e^-4	0.832	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2R	16826841	2R_16826841_SNP [dm3] 2R_20939336_SNP [dm6]	T	A	9.220e^-4	0.832	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2R	16826880	2R_16826880_SNP [dm3] 2R_20939375_SNP [dm6]	A	T	9.220e^-4	0.832	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2R	16859662	2R_16859662_SNP [dm3] 2R_20972157_SNP [dm6]	T	G	9.220e^-4	0.832	DOWNSTREAM CG15649 INTERGENIC	TF binding site mE1_TFBS_cad
2R	17082351	2R_17082351_SNP [dm3] 2R_21194846_SNP [dm6]	A	T	9.220e^-4	0.832	INTRON Lapsyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17159958	2R_17159958_SNP [dm3] 2R_21272453_SNP [dm6]	A	T	9.220e^-4	0.832	INTRON Rgk3
2R	17370661	2R_17370661_SNP [dm3] 2R_21483156_SNP [dm6]	A	G	9.220e^-4	0.832	INTRON Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17370669	2R_17370669_SNP [dm3] 2R_21483164_SNP [dm6]	G	T	9.220e^-4	0.832	INTRON Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17372952	2R_17372952_SNP [dm3] 2R_21485447_SNP [dm6]	T	C	9.220e^-4	0.832	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_HSA
2R	17373832	2R_17373832_SNP [dm3] 2R_21486327_SNP [dm6]	A	T	9.220e^-4	0.832	SPLICE_SITE_REGION Sara DOWNSTREAM Fkbp14 INTRON Sara	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17663773	2R_17663773_SNP [dm3] 2R_21776268_SNP [dm6]	A	T	9.220e^-4	0.832	INTERGENIC
2R	17797699	2R_17797699_SNP [dm3] 2R_21910194_SNP [dm6]	A	G	9.220e^-4	0.832	INTRON Fili
2R	17797705	2R_17797705_SNP [dm3] 2R_21910200_SNP [dm6]	G	T	9.220e^-4	0.832	INTRON Fili
2R	17852988	2R_17852988_SNP [dm3] 2R_21965483_SNP [dm6]	G	A	9.220e^-4	0.832	INTRON ppk9
2R	17853113	2R_17853113_SNP [dm3] 2R_21965608_SNP [dm6]	T	C	9.220e^-4	0.832	INTRON ppk9
2R	17894978	2R_17894978_SNP [dm3] 2R_22007473_SNP [dm6]	T	C	9.220e^-4	0.832	INTRON CG34370
2R	18446400	2R_18446400_SNP [dm3] 2R_22558895_SNP [dm6]	G	A	9.220e^-4	0.832	INTRON px
2R	18512544	2R_18512544_SNP [dm3] 2R_22625039_SNP [dm6]	T	A	9.220e^-4	0.832	INTRON CG33143
2R	19053514	2R_19053514_SNP [dm3] 2R_23165991_SNP [dm6]	G	T	9.220e^-4	0.832	SYNONYMOUS_CODING CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19369373	2R_19369373_SNP [dm3] 2R_23481850_SNP [dm6]	T	C	9.220e^-4	0.832	INTRON CG43795
2R	19647610	2R_19647610_SNP [dm3] 2R_23760087_SNP [dm6]	T	G	9.220e^-4	0.832	INTRON CG9850	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	6101841	2R_6101841_SNP [dm3] 2R_10214336_SNP [dm6]	T	A	9.220e^-4	0.832	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6102456	2R_6102456_DEL [dm3] 2R_10214951_DEL [dm6]	AA	A	9.220e^-4	0.832	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6102857	2R_6102857_DEL [dm3] 2R_10215352_DEL [dm6]	GA	G	9.220e^-4	0.832	INTRON Hr46 & 1 other
2R	6102992	2R_6102992_SNP [dm3] 2R_10215487_SNP [dm6]	A	T	9.220e^-4	0.832	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	6103088	2R_6103088_SNP [dm3] 2R_10215583_SNP [dm6]	G	T	9.220e^-4	0.832	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	6103494	2R_6103494_SNP [dm3] 2R_10215989_SNP [dm6]	G	A	9.220e^-4	0.832	INTRON Hr46 & 1 other
2R	6408565	2R_6408565_SNP [dm3] 2R_10521060_SNP [dm6]	A	G	9.220e^-4	0.832	SYNONYMOUS_CODING lola DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6538301	2R_6538301_SNP [dm3] 2R_10650796_SNP [dm6]	T	A	9.220e^-4	0.832	DOWNSTREAM CG12934 INTERGENIC
2R	7222183	2R_7222183_SNP [dm3] 2R_11334678_SNP [dm6]	T	A	9.220e^-4	0.832	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_sens
2R	7447933	2R_7447933_SNP [dm3] 2R_11560428_SNP [dm6]	C	A	9.220e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7447954	2R_7447954_SNP [dm3] 2R_11560449_SNP [dm6]	A	T	9.220e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7528656	2R_7528656_SNP [dm3] 2R_11641151_SNP [dm6]	A	C	9.220e^-4	0.832	UPSTREAM CG9005 DOWNSTREAM CG9003 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8964927	2R_8964927_SNP [dm3] 2R_13077422_SNP [dm6]	A	G	9.220e^-4	0.832	INTRON Drl-2	TF binding site mE1_TFBS_cad
2R	8964985	2R_8964985_SNP [dm3] 2R_13077480_SNP [dm6]	C	T	9.220e^-4	0.832	INTRON Drl-2	TF binding site mE1_TFBS_cad
2R	9540575	2R_9540575_SNP [dm3] 2R_13653070_SNP [dm6]	G	C	9.220e^-4	0.832	INTRON fas	TF binding site BDTNP1_TFBS_twi
3L	10490493	3L_10490493_SNP [dm3] 3L_10497393_SNP [dm6]	T	G	9.220e^-4	0.832	INTRON A2bp1
3L	10506461	3L_10506461_SNP [dm3] 3L_10513361_SNP [dm6]	T	A	9.220e^-4	0.832	INTRON A2bp1
3L	10506462	3L_10506462_DEL [dm3] 3L_10513362_DEL [dm6]	TT	T	9.220e^-4	0.832	INTRON A2bp1
3L	10662628	3L_10662628_SNP [dm3] 3L_10669528_SNP [dm6]	T	C	9.220e^-4	0.832	INTRON simj
3L	1066490	3L_1066490_SNP [dm3] 3L_1066490_SNP [dm6]	A	G	9.220e^-4	0.832	INTRON bab1
3L	11114754	3L_11114754_SNP [dm3] 3L_11121654_SNP [dm6]	C	T	9.220e^-4	0.832	SYNONYMOUS_CODING mRpL2 UPSTREAM fd68A DOWNSTREAM Ufd1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11120479	3L_11120479_SNP [dm3] 3L_11127379_SNP [dm6]	C	T	9.220e^-4	0.832	INTRON CG42575
3L	11466397	3L_11466397_SNP [dm3] 3L_11473297_SNP [dm6]	A	T	9.220e^-4	0.832	UTR_5_PRIME Vha16-3 UPSTREAM Vha16-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11617301	3L_11617301_DEL [dm3] 3L_11624201_DEL [dm6]	ACAATA	A	9.220e^-4	0.832	SPLICE_SITE_REGION CG6084 UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
3L	12043494	3L_12043494_SNP [dm3] 3L_12050394_SNP [dm6]	A	G	9.220e^-4	0.832	INTRON rols
3L	12066614	3L_12066614_SNP [dm3] 3L_12073514_SNP [dm6]	C	T	9.220e^-4	0.832	INTRON Sema-5c
3L	12196626	3L_12196626_SNP [dm3] 3L_12203526_SNP [dm6]	C	T	9.220e^-4	0.832	DOWNSTREAM CG5626 INTRON Adk1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1253848	3L_1253848_SNP [dm3] 3L_1253848_SNP [dm6]	T	A	9.220e^-4	0.832	UPSTREAM CG9133 INTRON CG9130 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13198480	3L_13198480_SNP [dm3] 3L_13205380_SNP [dm6]	G	C	9.220e^-4	0.832	INTERGENIC
3L	13403355	3L_13403355_SNP [dm3] 3L_13410255_SNP [dm6]	C	T	9.220e^-4	0.832	DOWNSTREAM CG10222 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13403885	3L_13403885_SNP [dm3] 3L_13410785_SNP [dm6]	T	C	9.220e^-4	0.832	DOWNSTREAM CG10222 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1
3L	13682224	3L_13682224_SNP [dm3] 3L_13689124_SNP [dm6]	G	T	9.220e^-4	0.832	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14220774	3L_14220774_SNP [dm3] 3L_14227674_SNP [dm6]	T	C	9.220e^-4	0.832	INTRON nuf	TF binding site BDTNP1_TFBS_sna
3L	15224740	3L_15224740_SNP [dm3] 3L_15231640_SNP [dm6]	T	A	9.220e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	16511543	3L_16511543_SNP [dm3] 3L_16518443_SNP [dm6]	C	T	9.220e^-4	0.832	SYNONYMOUS_CODING CG43373
3L	17066321	3L_17066321_SNP [dm3] 3L_17073221_SNP [dm6]	C	A	9.220e^-4	0.832	DOWNSTREAM Rbp6 INTRON Rbp6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	17066379	3L_17066379_SNP [dm3] 3L_17073279_SNP [dm6]	G	A	9.220e^-4	0.832	DOWNSTREAM Rbp6 INTRON Rbp6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18269802	3L_18269802_SNP [dm3] 3L_18276702_SNP [dm6]	T	C	9.220e^-4	0.832	INTERGENIC
3L	20164581	3L_20164581_SNP [dm3] 3L_20171481_SNP [dm6]	C	T	9.220e^-4	0.832	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
3L	2210672	3L_2210672_SNP [dm3] 3L_2210672_SNP [dm6]	A	G	9.220e^-4	0.832	DOWNSTREAM CG15878 INTERGENIC
3L	2210709	3L_2210709_SNP [dm3] 3L_2210709_SNP [dm6]	C	T	9.220e^-4	0.832	DOWNSTREAM CG15878 INTERGENIC
3L	2210717	3L_2210717_INS [dm3] 3L_2210717_INS [dm6]	T	TT	9.220e^-4	0.832	DOWNSTREAM CG15878 INTERGENIC
3L	2463680	3L_2463680_SNP [dm3] 3L_2463680_SNP [dm6]	C	G	9.220e^-4	0.832	NON_SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2510007	3L_2510007_SNP [dm3] 3L_2510007_SNP [dm6]	T	C	9.220e^-4	0.832	SYNONYMOUS_CODING Spn INTRON Spn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2510010	3L_2510010_SNP [dm3] 3L_2510010_SNP [dm6]	A	G	9.220e^-4	0.832	SYNONYMOUS_CODING Spn INTRON Spn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2832761	3L_2832761_SNP [dm3] 3L_2832761_SNP [dm6]	T	C	9.220e^-4	0.832	INTRON CG43444
3L	4304113	3L_4304113_SNP [dm3] 3L_4304113_SNP [dm6]	G	A	9.220e^-4	0.832	INTRON dyl
3L	5155913	3L_5155913_INS [dm3] 3L_5162813_INS [dm6]	T	TA	9.220e^-4	0.832	INTRON shep
3L	5305978	3L_5305978_SNP [dm3] 3L_5312878_SNP [dm6]	C	A	9.220e^-4	0.832	INTERGENIC
3L	5306459	3L_5306459_SNP [dm3] 3L_5313359_SNP [dm6]	G	C	9.220e^-4	0.832	INTERGENIC
3L	5307586	3L_5307586_SNP [dm3] 3L_5314486_SNP [dm6]	G	T	9.220e^-4	0.832	INTERGENIC
3L	6080188	3L_6080188_SNP [dm3] 3L_6087088_SNP [dm6]	A	C	9.220e^-4	0.832	INTRON CG13293
3L	6080223	3L_6080223_SNP [dm3] 3L_6087123_SNP [dm6]	T	C	9.220e^-4	0.832	INTRON CG13293
3L	6080269	3L_6080269_DEL [dm3] 3L_6087169_DEL [dm6]	TTT	T	9.220e^-4	0.832	INTRON CG13293
3L	6080478	3L_6080478_SNP [dm3] 3L_6087378_SNP [dm6]	T	G	9.220e^-4	0.832	INTRON CG13293
3L	6432890	3L_6432890_SNP [dm3] 3L_6439790_SNP [dm6]	G	A	9.220e^-4	0.832	INTRON CG42747
3L	6651837	3L_6651837_SNP [dm3] 3L_6658737_SNP [dm6]	C	T	9.220e^-4	0.832	INTERGENIC
3L	7268432	3L_7268432_SNP [dm3] 3L_7275332_SNP [dm6]	G	C	9.220e^-4	0.832	INTRON unc-13-4A
3L	8336276	3L_8336276_SNP [dm3] 3L_8343176_SNP [dm6]	C	A	9.220e^-4	0.832	DOWNSTREAM CG7083 INTRON DNApol-alpha50	TF binding site BDTNP1_TFBS_dl
3L	8704804	3L_8704804_SNP [dm3] 3L_8711704_SNP [dm6]	G	C	9.220e^-4	0.832	INTERGENIC	regulatory region REDfly_CRMs
3L	8734460	3L_8734460_SNP [dm3] 3L_8741360_SNP [dm6]	A	G	9.220e^-4	0.832	INTRON Prm	TF binding site BDTNP1_TFBS_dl
3L	9016840	3L_9016840_SNP [dm3] 3L_9023740_SNP [dm6]	G	A	9.220e^-4	0.832	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	9016844	3L_9016844_SNP [dm3] 3L_9023744_SNP [dm6]	C	G	9.220e^-4	0.832	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	9016847	3L_9016847_SNP [dm3] 3L_9023747_SNP [dm6]	G	A	9.220e^-4	0.832	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	9016850	3L_9016850_DEL [dm3] 3L_9023750_DEL [dm6]	GTTCCTACGCTCGTCG...	G	9.220e^-4	0.832	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	9016892	3L_9016892_SNP [dm3] 3L_9023792_SNP [dm6]	C	G	9.220e^-4	0.832	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	9062036	3L_9062036_SNP [dm3] 3L_9068936_SNP [dm6]	T	C	9.220e^-4	0.832	UTR_3_PRIME CG4911 DOWNSTREAM CG4911
3L	9297786	3L_9297786_SNP [dm3] 3L_9304686_SNP [dm6]	T	A	9.220e^-4	0.832	INTERGENIC
3R	11353304	3R_11353304_SNP [dm3] 3R_15527582_SNP [dm6]	G	C	9.220e^-4	0.832	INTERGENIC
3R	11353327	3R_11353327_SNP [dm3] 3R_15527605_SNP [dm6]	A	G	9.220e^-4	0.832	INTERGENIC
3R	11353901	3R_11353901_SNP [dm3] 3R_15528179_SNP [dm6]	A	G	9.220e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_cad
3R	11402961	3R_11402961_SNP [dm3] 3R_15577239_SNP [dm6]	T	A	9.220e^-4	0.832	INTERGENIC
3R	11442228	3R_11442228_SNP [dm3] 3R_15616506_SNP [dm6]	A	G	9.220e^-4	0.832	INTERGENIC
3R	11442233	3R_11442233_SNP [dm3] 3R_15616511_SNP [dm6]	A	G	9.220e^-4	0.832	INTERGENIC
3R	11454213	3R_11454213_SNP [dm3] 3R_15628491_SNP [dm6]	T	C	9.220e^-4	0.832	INTERGENIC
3R	12521091	3R_12521091_SNP [dm3] 3R_16695369_SNP [dm6]	C	T	9.220e^-4	0.832	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	12532651	3R_12532651_SNP [dm3] 3R_16706929_SNP [dm6]	T	C	9.220e^-4	0.832	INTRON Ubx	TF binding site BDTNP1_TFBS_twi
3R	13101381	3R_13101381_SNP [dm3] 3R_17275659_SNP [dm6]	G	A	9.220e^-4	0.832	INTERGENIC
3R	13298616	3R_13298616_SNP [dm3] 3R_17472894_SNP [dm6]	C	T	9.220e^-4	0.832	INTERGENIC
3R	13548648	3R_13548648_SNP [dm3] 3R_17722926_SNP [dm6]	A	G	9.220e^-4	0.832	UTR_3_PRIME Pxt
3R	13548715	3R_13548715_SNP [dm3] 3R_17722993_SNP [dm6]	A	G	9.220e^-4	0.832	DOWNSTREAM Pxt INTERGENIC
3R	14230212	3R_14230212_SNP [dm3] 3R_18404490_SNP [dm6]	T	C	9.220e^-4	0.832	UTR_3_PRIME koko UPSTREAM CG7685	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	16584655	3R_16584655_SNP [dm3] 3R_20758933_SNP [dm6]	G	A	9.220e^-4	0.832	INTRON Syp & 1 other
3R	16584764	3R_16584764_SNP [dm3] 3R_20759042_SNP [dm6]	G	A	9.220e^-4	0.832	SYNONYMOUS_CODING CG31195 INTRON Syp
3R	17640623	3R_17640623_SNP [dm3] 3R_21814901_SNP [dm6]	C	A	9.220e^-4	0.832	INTRON CASK
3R	17640646	3R_17640646_SNP [dm3] 3R_21814924_SNP [dm6]	C	G	9.220e^-4	0.832	INTRON CASK
3R	17646199	3R_17646199_SNP [dm3] 3R_21820477_SNP [dm6]	A	G	9.220e^-4	0.832	INTRON CASK
3R	18857083	3R_18857083_SNP [dm3] 3R_23031361_SNP [dm6]	C	A	9.220e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	1885858	3R_1885858_SNP [dm3] 3R_6060136_SNP [dm6]	G	T	9.220e^-4	0.832	INTERGENIC
3R	19765893	3R_19765893_SNP [dm3] 3R_23940171_SNP [dm6]	C	T	9.220e^-4	0.832	INTRON Gdh
3R	20485565	3R_20485565_SNP [dm3] 3R_24659843_SNP [dm6]	A	T	9.220e^-4	0.832	SYNONYMOUS_CODING CG31126 DOWNSTREAM Ppox & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23520941	3R_23520941_SNP [dm3] 3R_27695219_SNP [dm6]	T	A	9.220e^-4	0.832	UPSTREAM CG43320 DOWNSTREAM CG43319 & 1 other INTERGENIC
3R	24227978	3R_24227978_SNP [dm3] 3R_28402256_SNP [dm6]	A	G	9.220e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_inv
3R	25068798	3R_25068798_SNP [dm3] 3R_29243076_SNP [dm6]	G	A	9.220e^-4	0.832	SYNONYMOUS_CODING CG31445
3R	25068827	3R_25068827_SNP [dm3] 3R_29243105_SNP [dm6]	G	A	9.220e^-4	0.832	INTRON CG31445
3R	25890956	3R_25890956_SNP [dm3] 3R_30065234_SNP [dm6]	T	C	9.220e^-4	0.832	INTRON sima
3R	26218337	3R_26218337_SNP [dm3] 3R_30392615_SNP [dm6]	C	G	9.220e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26293182	3R_26293182_SNP [dm3] 3R_30467460_SNP [dm6]	C	T	9.220e^-4	0.832	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Kr
3R	26297923	3R_26297923_SNP [dm3] 3R_30472201_SNP [dm6]	A	G	9.220e^-4	0.832	INTRON PH4alphaEFB
3R	26895382	3R_26895382_SNP [dm3] 3R_31069660_SNP [dm6]	T	A	9.220e^-4	0.832	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
3R	27071140	3R_27071140_SNP [dm3] 3R_31245418_SNP [dm6]	A	G	9.220e^-4	0.832	INTRON qless
3R	27071142	3R_27071142_SNP [dm3] 3R_31245420_SNP [dm6]	G	A	9.220e^-4	0.832	INTRON qless
3R	27071176	3R_27071176_SNP [dm3] 3R_31245454_SNP [dm6]	T	C	9.220e^-4	0.832	INTRON qless
3R	27171437	3R_27171437_SNP [dm3] 3R_31345715_SNP [dm6]	A	T	9.220e^-4	0.832	INTRON CG34347	TF binding site mE1_TFBS_chinmo
X	12308828	X_12308828_SNP [dm3] X_12414795_SNP [dm6]	C	A	9.220e^-4	0.832	INTERGENIC
X	13964652	X_13964652_SNP [dm3] X_14070619_SNP [dm6]	T	C	9.220e^-4	0.832	UPSTREAM tRNA:S474:12Eh INTERGENIC
X	14655105	X_14655105_SNP [dm3] X_14761072_SNP [dm6]	T	G	9.220e^-4	0.832	INTRON CG15890
X	14655109	X_14655109_SNP [dm3] X_14761076_SNP [dm6]	A	G	9.220e^-4	0.832	INTRON CG15890
X	14655133	X_14655133_SNP [dm3] X_14761100_SNP [dm6]	C	T	9.220e^-4	0.832	INTRON CG15890
X	14655179	X_14655179_SNP [dm3] X_14761146_SNP [dm6]	G	A	9.220e^-4	0.832	INTRON CG15890
X	14655377	X_14655377_INS [dm3] X_14761344_INS [dm6]	C	CTCCAACGAATGTCTTTTTA...	9.220e^-4	0.832	INTRON CG15890
X	14749350	X_14749350_SNP [dm3] X_14855317_SNP [dm6]	G	A	9.220e^-4	0.832	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	15580590	X_15580590_SNP [dm3] X_15686557_SNP [dm6]	T	C	9.220e^-4	0.832	NON_SYNONYMOUS_CODING CG15599	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	16031644	X_16031644_INS [dm3] X_16137611_INS [dm6]	T	TT	9.220e^-4	0.832	INTRON disco-r
X	16904596	X_16904596_SNP [dm3] X_17010563_SNP [dm6]	G	A	9.220e^-4	0.832	INTRON CG45002
X	17229245	X_17229245_SNP [dm3] X_17335212_SNP [dm6]	C	T	9.220e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17395750	X_17395750_SNP [dm3] X_17501717_SNP [dm6]	T	C	9.220e^-4	0.832	INTRON CG43658
X	18741014	X_18741014_SNP [dm3] X_18846981_SNP [dm6]	C	T	9.220e^-4	0.832	SYNONYMOUS_CODING CG7280 INTRON CG34422	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19015279	X_19015279_SNP [dm3] X_19121246_SNP [dm6]	G	T	9.220e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	19029782	X_19029782_SNP [dm3] X_19135749_SNP [dm6]	T	C	9.220e^-4	0.832	DOWNSTREAM RhoGAP18B INTRON Obp18a
X	19029808	X_19029808_SNP [dm3] X_19135775_SNP [dm6]	A	T	9.220e^-4	0.832	DOWNSTREAM RhoGAP18B INTRON Obp18a
X	19110369	X_19110369_SNP [dm3] X_19216336_SNP [dm6]	A	G	9.220e^-4	0.832	SYNONYMOUS_CODING Muc18B
X	19110555	X_19110555_DEL [dm3] X_19216522_DEL [dm6]	GG	G	9.220e^-4	0.832	UTR_3_PRIME Muc18B	TF binding site BDTNP1_TFBS_da
X	20024808	X_20024808_SNP [dm3] X_20130775_SNP [dm6]	A	C	9.220e^-4	0.832	NON_SYNONYMOUS_CODING CG42582
X	20751403	X_20751403_SNP [dm3] X_20880376_SNP [dm6]	A	G	9.220e^-4	0.832	INTRON shakB	transposable element FlyBase
X	20751410	X_20751410_SNP [dm3] X_20880383_SNP [dm6]	A	C	9.220e^-4	0.832	INTRON shakB	transposable element FlyBase
X	20858744	X_20858744_SNP [dm3] X_20987717_SNP [dm6]	G	C	9.220e^-4	0.832	INTERGENIC
X	20868890	X_20868890_SNP [dm3] X_20997863_SNP [dm6]	T	C	9.220e^-4	0.832	INTERGENIC
X	21060136	X_21060136_SNP [dm3] X_21189109_SNP [dm6]	G	C	9.220e^-4	0.832	DOWNSTREAM CR45506 INTERGENIC
X	2401671	X_2401671_SNP [dm3] X_2507638_SNP [dm6]	C	T	9.220e^-4	0.832	INTRON trol
X	2961808	X_2961808_SNP [dm3] X_3067775_SNP [dm6]	G	A	9.220e^-4	0.832	UPSTREAM CG4116 INTRON kirre
X	3210636	X_3210636_DEL [dm3] X_3316603_DEL [dm6]	TGACT	T	9.220e^-4	0.832	UPSTREAM CG10793 INTRON dnc & 1 other
X	3912037	X_3912037_SNP [dm3] X_4018004_SNP [dm6]	T	A	9.220e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_Med
X	3947186	X_3947186_SNP [dm3] X_4053153_SNP [dm6]	G	A	9.220e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4301242	X_4301242_SNP [dm3] X_4407209_SNP [dm6]	C	T	9.220e^-4	0.832	INTRON CR32773
X	4416191	X_4416191_SNP [dm3] X_4522158_SNP [dm6]	G	A	9.220e^-4	0.832	INTRON CR32773
X	4416329	X_4416329_SNP [dm3] X_4522296_SNP [dm6]	G	T	9.220e^-4	0.832	INTRON CR32773
X	7006259	X_7006259_SNP [dm3] X_7112226_SNP [dm6]	G	C	9.220e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	7229952	X_7229952_SNP [dm3] X_7335919_SNP [dm6]	G	A	9.220e^-4	0.832	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
X	7361998	X_7361998_SNP [dm3] X_7467965_SNP [dm6]	C	T	9.220e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8283677	X_8283677_INS [dm3] X_8389644_INS [dm6]	A	ATGTA	9.220e^-4	0.832	DOWNSTREAM CG1387 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8283706	X_8283706_SNP [dm3] X_8389673_SNP [dm6]	T	C	9.220e^-4	0.832	DOWNSTREAM CG1387 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8915734	X_8915734_SNP [dm3] X_9021701_SNP [dm6]	C	A	9.220e^-4	0.832	INTRON CR43836 & 1 other
X	8921600	X_8921600_SNP [dm3] X_9027567_SNP [dm6]	A	T	9.220e^-4	0.832	UTR_3_PRIME rdgA INTRON CR43836

By genomic position
Variant impact
Gene name

RPL32P phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results