DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.608e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

773 significant hits at p-value < 0.001.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	13731031	3L_13731031_SNP [dm3] 3L_13737931_SNP [dm6]	A	T	1.106e^-8	0.006	INTRON bru-3
3R	16131712	3R_16131712_SNP [dm3] 3R_20305990_SNP [dm6]	T	C	1.564e^-8	0.006	DOWNSTREAM CG4362 INTERGENIC
3R	16131716	3R_16131716_SNP [dm3] 3R_20305994_SNP [dm6]	A	G	1.564e^-8	0.006	DOWNSTREAM CG4362 INTERGENIC	transposable element FlyBase
2R	16944984	2R_16944984_SNP [dm3] 2R_21057479_SNP [dm6]	A	C	2.212e^-8	0.006	UPSTREAM cpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1666516	3L_1666516_SNP [dm3] 3L_1666516_SNP [dm6]	C	G	2.212e^-8	0.006	UTR_3_PRIME CG7974 DOWNSTREAM snoRNA:Me28S-A2634b & 3 others INTRON Uhg7 EXON snoRNA:Me28S-A2634c	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
3L	8915057	3L_8915057_SNP [dm3] 3L_8921957_SNP [dm6]	G	T	2.212e^-8	0.006	INTRON Tsp66E
2L	11360287	2L_11360287_SNP [dm3] 2L_11360287_SNP [dm6]	T	G	9.047e^-5	0.828	INTRON salr	regulatory region REDfly_CRMs
3R	16091202	3R_16091202_DEL [dm3] 3R_20265480_DEL [dm6]	GCAG	G	9.047e^-5	0.828	INTRON cic
2R	16388634	2R_16388634_SNP [dm3] 2R_20501129_SNP [dm6]	G	T	1.156e^-4	0.828	INTERGENIC	regulatory region REDfly_CRMs
2R	19668908	2R_19668908_SNP [dm3] 2R_23781385_SNP [dm6]	G	T	1.156e^-4	0.828	INTRON CG9850
3L	13239962	3L_13239962_SNP [dm3] 3L_13246862_SNP [dm6]	G	T	1.156e^-4	0.828	DOWNSTREAM CG32119 INTRON caps
3L	14203099	3L_14203099_SNP [dm3] 3L_14209999_SNP [dm6]	G	A	1.156e^-4	0.828	INTRON nuf
3L	14205740	3L_14205740_SNP [dm3] 3L_14212640_SNP [dm6]	G	T	1.156e^-4	0.828	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3L	15505935	3L_15505935_SNP [dm3] 3L_15512835_SNP [dm6]	C	T	1.156e^-4	0.828	SYNONYMOUS_CODING Eip71CD UTR_3_PRIME Eip71CD	TF binding site mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	23887033	3L_23887033_SNP [dm3] 3L_23893933_SNP [dm6]	C	G	1.156e^-4	0.828	INTRON CG40470
3L	5881190	3L_5881190_SNP [dm3] 3L_5888090_SNP [dm6]	T	A	1.156e^-4	0.828	INTERGENIC
3L	8914948	3L_8914948_SNP [dm3] 3L_8921848_SNP [dm6]	G	C	1.156e^-4	0.828	INTRON Tsp66E
3R	13010414	3R_13010414_SNP [dm3] 3R_17184692_SNP [dm6]	G	T	1.156e^-4	0.828	INTRON Mur89F
3R	15367170	3R_15367170_SNP [dm3] 3R_19541448_SNP [dm6]	T	G	1.156e^-4	0.828	INTRON Dys
X	20774213	X_20774213_INS [dm3] X_20903186_INS [dm6]	G	GTGTGAGTG	1.156e^-4	0.828	INTRON shakB
X	2169556	X_2169556_SNP [dm3] X_2275523_SNP [dm6]	G	A	1.156e^-4	0.828	UPSTREAM CG2918 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA
X	2180469	X_2180469_SNP [dm3] X_2286436_SNP [dm6]	G	A	1.156e^-4	0.828	INTRON CG2865	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2180470	X_2180470_DEL [dm3] X_2286437_DEL [dm6]	GAGAA	G	1.156e^-4	0.828	INTRON CG2865	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2180478	X_2180478_SNP [dm3] X_2286445_SNP [dm6]	A	G	1.156e^-4	0.828	INTRON CG2865	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8469228	X_8469228_SNP [dm3] X_8575195_SNP [dm6]	T	A	1.156e^-4	0.828	INTRON CG12065	TF binding site BDTNP1_TFBS_dl
2L	17587962	2L_17587962_SNP [dm3] 2L_17587962_SNP [dm6]	A	T	1.356e^-4	0.828	DOWNSTREAM CR44411 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3109409	2L_3109409_DEL [dm3] 2L_3109409_DEL [dm6]	TT	A	1.795e^-4	0.828	UPSTREAM PpD6 INTRON toc	TF binding site mE1_TFBS_inv
2L	7586069	2L_7586069_SNP [dm3] 2L_7586069_SNP [dm6]	A	G	1.795e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8094331	2L_8094331_SNP [dm3] 2L_8094331_SNP [dm6]	A	T	1.795e^-4	0.828	INTRON Bsg	TF binding site BDTNP1_TFBS_twi
2R	10008361	2R_10008361_SNP [dm3] 2R_14120856_SNP [dm6]	C	G	1.795e^-4	0.828	INTRON Prosap	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	18568931	3L_18568931_SNP [dm3] 3L_18575831_SNP [dm6]	T	C	1.795e^-4	0.828	UTR_3_PRIME AstC-R1
3L	18568935	3L_18568935_SNP [dm3] 3L_18575835_SNP [dm6]	T	C	1.795e^-4	0.828	UTR_3_PRIME AstC-R1
2L	3054961	2L_3054961_SNP [dm3] 2L_3054961_SNP [dm6]	T	G	1.891e^-4	0.828	INTRON v_2_k05816
2L	5842018	2L_5842018_SNP [dm3] 2L_5842018_SNP [dm6]	A	T	1.891e^-4	0.828	INTRON TrissinR
2L	5959143	2L_5959143_SNP [dm3] 2L_5959143_SNP [dm6]	G	C	1.891e^-4	0.828	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC	TF binding site mE1_TFBS_cad
2L	8165871	2L_8165871_SNP [dm3] 2L_8165871_SNP [dm6]	T	C	1.891e^-4	0.828	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	11059627	2R_11059627_SNP [dm3] 2R_15172122_SNP [dm6]	C	A	1.891e^-4	0.828	INTRON igl
2R	13571570	2R_13571570_SNP [dm3] 2R_17684065_SNP [dm6]	A	T	1.891e^-4	0.828	UPSTREAM Sema-1b & 1 other INTRON HPS4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13571581	2R_13571581_SNP [dm3] 2R_17684076_SNP [dm6]	A	G	1.891e^-4	0.828	UPSTREAM Sema-1b & 1 other INTRON HPS4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13615952	2R_13615952_SNP [dm3] 2R_17728447_SNP [dm6]	C	G	1.891e^-4	0.828	START_GAINED CG4984 UTR_5_PRIME CG4984 UTR_3_PRIME CG4975 UPSTREAM CG4984
2R	15722324	2R_15722324_SNP [dm3] 2R_19834819_SNP [dm6]	G	C	1.891e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17768719	2R_17768719_SNP [dm3] 2R_21881214_SNP [dm6]	A	G	1.891e^-4	0.828	DOWNSTREAM PpN58A INTRON Fili
2R	6917977	2R_6917977_SNP [dm3] 2R_11030472_SNP [dm6]	C	T	1.891e^-4	0.828	INTRON luna
3L	11018664	3L_11018664_SNP [dm3] 3L_11025564_SNP [dm6]	C	G	1.891e^-4	0.828	NON_SYNONYMOUS_CODING CG32079 DOWNSTREAM Fad2
3L	15271860	3L_15271860_SNP [dm3] 3L_15278760_SNP [dm6]	T	A	1.891e^-4	0.828	INTERGENIC
3L	15271861	3L_15271861_SNP [dm3] 3L_15278761_SNP [dm6]	G	A	1.891e^-4	0.828	INTERGENIC
3L	2925603	3L_2925603_SNP [dm3] 3L_2925603_SNP [dm6]	G	A	1.891e^-4	0.828	INTRON Shab
3L	7826296	3L_7826296_SNP [dm3] 3L_7833196_SNP [dm6]	C	T	1.891e^-4	0.828	UPSTREAM Pdp1 INTRON Pdp1
X	2343523	X_2343523_SNP [dm3] X_2449490_SNP [dm6]	G	C	1.891e^-4	0.828	SYNONYMOUS_CODING z INTRON boi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	10087305	2L_10087305_SNP [dm3] 2L_10087305_SNP [dm6]	G	C	2.423e^-4	0.828	INTRON CG44153	TF binding site mE1_TFBS_chinmo
2L	1035854	2L_1035854_SNP [dm3] 2L_1035854_SNP [dm6]	G	C	2.423e^-4	0.828	INTRON IA-2
2L	1042190	2L_1042190_SNP [dm3] 2L_1042190_SNP [dm6]	G	A	2.423e^-4	0.828	INTRON IA-2
2L	1057068	2L_1057068_SNP [dm3] 2L_1057068_SNP [dm6]	G	A	2.423e^-4	0.828	INTRON S
2L	10795910	2L_10795910_SNP [dm3] 2L_10795910_SNP [dm6]	G	A	2.423e^-4	0.828	INTRON CG31869
2L	13500829	2L_13500829_SNP [dm3] 2L_13500829_SNP [dm6]	G	A	2.423e^-4	0.828	UTR_3_PRIME B4 DOWNSTREAM CG42784	TF binding site mE1_TFBS_bab1
2L	1451515	2L_1451515_SNP [dm3] 2L_1451515_SNP [dm6]	C	A	2.423e^-4	0.828	INTERGENIC
2L	1451524	2L_1451524_SNP [dm3] 2L_1451524_SNP [dm6]	G	T	2.423e^-4	0.828	INTERGENIC
2L	18883415	2L_18883415_SNP [dm3] 2L_18883415_SNP [dm6]	T	A	2.423e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19878032	2L_19878032_SNP [dm3] 2L_19878032_SNP [dm6]	G	C	2.423e^-4	0.828	INTRON sick
2L	2738874	2L_2738874_SNP [dm3] 2L_2738874_SNP [dm6]	C	T	2.423e^-4	0.828	SYNONYMOUS_CODING CG31689
2L	2739781	2L_2739781_SNP [dm3] 2L_2739781_SNP [dm6]	A	T	2.423e^-4	0.828	UTR_3_PRIME CG31689 UPSTREAM Hrs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4348934	2L_4348934_SNP [dm3] 2L_4348934_SNP [dm6]	A	T	2.423e^-4	0.828	UPSTREAM CR44699 DOWNSTREAM CR44697 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5936045	2L_5936045_DEL [dm3] 2L_5936045_DEL [dm6]	GTACGCTTTGTTTATTATAA...	G	2.423e^-4	0.828	INTRON dsf	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6161970	2L_6161970_SNP [dm3] 2L_6161970_SNP [dm6]	G	A	2.423e^-4	0.828	DOWNSTREAM CG13989 INTERGENIC
2L	6760553	2L_6760553_SNP [dm3] 2L_6760553_SNP [dm6]	C	G	2.423e^-4	0.828	SPLICE_SITE_REGION CG11321 UPSTREAM CG11322 INTRON CG11321	TF binding site BDTNP1_TFBS_twi
2L	6760557	2L_6760557_SNP [dm3] 2L_6760557_SNP [dm6]	T	C	2.423e^-4	0.828	SPLICE_SITE_REGION CG11321 UPSTREAM CG11322 INTRON CG11321	TF binding site BDTNP1_TFBS_twi
2L	7752125	2L_7752125_SNP [dm3] 2L_7752125_SNP [dm6]	T	G	2.423e^-4	0.828	DOWNSTREAM CG7203 INTERGENIC
2R	10418162	2R_10418162_SNP [dm3] 2R_14530657_SNP [dm6]	C	T	2.423e^-4	0.828	INTRON ttv
2R	11850232	2R_11850232_SNP [dm3] 2R_15962727_SNP [dm6]	G	A	2.423e^-4	0.828	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	11850274	2R_11850274_SNP [dm3] 2R_15962769_SNP [dm6]	T	G	2.423e^-4	0.828	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	11874557	2R_11874557_SNP [dm3] 2R_15987052_SNP [dm6]	T	G	2.423e^-4	0.828	UPSTREAM CR45021 INTRON Strn-Mlck
2R	12044726	2R_12044726_SNP [dm3] 2R_16157221_SNP [dm6]	A	C	2.423e^-4	0.828	DOWNSTREAM CG10734 INTRON lbk	TF binding site BDTNP1_TFBS_prd
2R	12044766	2R_12044766_SNP [dm3] 2R_16157261_SNP [dm6]	C	T	2.423e^-4	0.828	DOWNSTREAM CG10734 INTRON lbk
2R	12044770	2R_12044770_SNP [dm3] 2R_16157265_SNP [dm6]	T	A	2.423e^-4	0.828	DOWNSTREAM CG10734 INTRON lbk
2R	12302067	2R_12302067_SNP [dm3] 2R_16414562_SNP [dm6]	C	T	2.423e^-4	0.828	DOWNSTREAM Menl-2 & 1 other INTRON Sema-2b
2R	12667658	2R_12667658_SNP [dm3] 2R_16780153_SNP [dm6]	T	A	2.423e^-4	0.828	UTR_5_PRIME resilin UPSTREAM resilin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	14136876	2R_14136876_SNP [dm3] 2R_18249371_SNP [dm6]	T	C	2.423e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	14323884	2R_14323884_SNP [dm3] 2R_18436379_SNP [dm6]	C	T	2.423e^-4	0.828	INTRON CG30118	TF binding site BDTNP1_TFBS_dl
2R	14451281	2R_14451281_SNP [dm3] 2R_18563776_SNP [dm6]	A	T	2.423e^-4	0.828	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	15230138	2R_15230138_SNP [dm3] 2R_19342633_SNP [dm6]	G	C	2.423e^-4	0.828	SYNONYMOUS_CODING CG9975 INTRON Rgk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	15533323	2R_15533323_SNP [dm3] 2R_19645818_SNP [dm6]	C	T	2.423e^-4	0.828	DOWNSTREAM CG15905 INTERGENIC
2R	15533526	2R_15533526_SNP [dm3] 2R_19646021_SNP [dm6]	G	T	2.423e^-4	0.828	DOWNSTREAM CG15905 INTERGENIC
2R	16388542	2R_16388542_SNP [dm3] 2R_20501037_SNP [dm6]	T	A	2.423e^-4	0.828	INTERGENIC	regulatory region REDfly_CRMs
2R	16388612	2R_16388612_SNP [dm3] 2R_20501107_SNP [dm6]	G	C	2.423e^-4	0.828	INTERGENIC	regulatory region REDfly_CRMs
2R	16388697	2R_16388697_SNP [dm3] 2R_20501192_SNP [dm6]	T	A	2.423e^-4	0.828	INTERGENIC	regulatory region REDfly_CRMs
2R	16440782	2R_16440782_SNP [dm3] 2R_20553277_SNP [dm6]	C	T	2.423e^-4	0.828	INTERGENIC
2R	16440783	2R_16440783_SNP [dm3] 2R_20553278_SNP [dm6]	A	C	2.423e^-4	0.828	INTERGENIC
2R	16577840	2R_16577840_SNP [dm3] 2R_20690335_SNP [dm6]	T	C	2.423e^-4	0.828	INTERGENIC
2R	16804337	2R_16804337_SNP [dm3] 2R_20916832_SNP [dm6]	T	C	2.423e^-4	0.828	UTR_5_PRIME Rx	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16818156	2R_16818156_SNP [dm3] 2R_20930651_SNP [dm6]	C	G	2.423e^-4	0.828	INTRON Rx
2R	17360161	2R_17360161_SNP [dm3] 2R_21472656_SNP [dm6]	G	A	2.423e^-4	0.828	INTRON Sdc
2R	17360167	2R_17360167_SNP [dm3] 2R_21472662_SNP [dm6]	T	A	2.423e^-4	0.828	INTRON Sdc
2R	17476800	2R_17476800_SNP [dm3] 2R_21589295_SNP [dm6]	T	A	2.423e^-4	0.828	UPSTREAM CG33225 INTERGENIC
2R	17672086	2R_17672086_SNP [dm3] 2R_21784581_SNP [dm6]	T	A	2.423e^-4	0.828	INTERGENIC
2R	18205508	2R_18205508_INS [dm3] 2R_22318003_INS [dm6]	C	CC	2.423e^-4	0.828	UPSTREAM Gp150 DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	18206395	2R_18206395_SNP [dm3] 2R_22318890_SNP [dm6]	C	T	2.423e^-4	0.828	DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl mE1_TFBS_zfh1
2R	18335168	2R_18335168_SNP [dm3] 2R_22447663_SNP [dm6]	C	A	2.423e^-4	0.828	INTERGENIC
2R	19099753	2R_19099753_SNP [dm3] 2R_23212230_SNP [dm6]	G	T	2.423e^-4	0.828	UPSTREAM LS2 INTERGENIC	TF binding site mE1_TFBS_inv
2R	19203190	2R_19203190_SNP [dm3] 2R_23315667_SNP [dm6]	A	G	2.423e^-4	0.828	INTERGENIC
2R	19260654	2R_19260654_SNP [dm3] 2R_23373131_SNP [dm6]	T	C	2.423e^-4	0.828	SYNONYMOUS_CODING Golgin245	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2917939	2R_2917939_SNP [dm3] 2R_7030434_SNP [dm6]	T	A	2.423e^-4	0.828	INTRON Tsp42Eg
2R	3623965	2R_3623965_SNP [dm3] 2R_7736460_SNP [dm6]	A	G	2.423e^-4	0.828	UPSTREAM CG18812 DOWNSTREAM CG30497 & 1 other INTERGENIC
2R	4514544	2R_4514544_SNP [dm3] 2R_8627039_SNP [dm6]	C	T	2.423e^-4	0.828	SYNONYMOUS_CODING beta3GalTII UPSTREAM CG14749 DOWNSTREAM Vps25	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	4526744	2R_4526744_SNP [dm3] 2R_8639239_SNP [dm6]	C	A	2.423e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	4526766	2R_4526766_DEL [dm3] 2R_8639261_DEL [dm6]	CCAGATCCACAGAGC...	C	2.423e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	4529094	2R_4529094_SNP [dm3] 2R_8641589_SNP [dm6]	G	A	2.423e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
2R	4529095	2R_4529095_SNP [dm3] 2R_8641590_SNP [dm6]	C	G	2.423e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
2R	4529129	2R_4529129_SNP [dm3] 2R_8641624_SNP [dm6]	T	C	2.423e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
2R	4630532	2R_4630532_SNP [dm3] 2R_8743027_SNP [dm6]	A	G	2.423e^-4	0.828	INTRON CG8740
2R	4632840	2R_4632840_SNP [dm3] 2R_8745335_SNP [dm6]	T	A	2.423e^-4	0.828	UPSTREAM CR44277 INTRON CG8740
2R	6503192	2R_6503192_SNP [dm3] 2R_10615687_SNP [dm6]	T	G	2.423e^-4	0.828	UTR_3_PRIME psq
2R	6671682	2R_6671682_SNP [dm3] 2R_10784177_SNP [dm6]	A	G	2.423e^-4	0.828	INTRON CG33144 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	6671793	2R_6671793_SNP [dm3] 2R_10784288_SNP [dm6]	T	C	2.423e^-4	0.828	INTRON CG33144 & 1 other	TF binding site mE1_TFBS_HSA
2R	6833767	2R_6833767_SNP [dm3] 2R_10946262_SNP [dm6]	G	T	2.423e^-4	0.828	UPSTREAM CR45228 INTERGENIC	TF binding site mE1_TFBS_cad
2R	7251985	2R_7251985_SNP [dm3] 2R_11364480_SNP [dm6]	T	C	2.423e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7261966	2R_7261966_SNP [dm3] 2R_11374461_SNP [dm6]	T	C	2.423e^-4	0.828	UPSTREAM CG13203 INTRON CG13203	TF binding site mE1_TFBS_chinmo
2R	7261978	2R_7261978_SNP [dm3] 2R_11374473_SNP [dm6]	A	T	2.423e^-4	0.828	UPSTREAM CG13203 INTRON CG13203	TF binding site mE1_TFBS_chinmo
2R	7542841	2R_7542841_SNP [dm3] 2R_11655336_SNP [dm6]	G	A	2.423e^-4	0.828	SYNONYMOUS_CODING CG13198 INTRON Roc2
2R	9291510	2R_9291510_SNP [dm3] 2R_13404005_SNP [dm6]	T	A	2.423e^-4	0.828	INTERGENIC
2R	9608642	2R_9608642_SNP [dm3] 2R_13721137_SNP [dm6]	T	A	2.423e^-4	0.828	INTRON fas
2R	9931618	2R_9931618_SNP [dm3] 2R_14044113_SNP [dm6]	A	T	2.423e^-4	0.828	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10371271	3L_10371271_SNP [dm3] 3L_10378171_SNP [dm6]	T	C	2.423e^-4	0.828	INTERGENIC
3L	11035931	3L_11035931_SNP [dm3] 3L_11042831_SNP [dm6]	A	T	2.423e^-4	0.828	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
3L	11035936	3L_11035936_INS [dm3] 3L_11042836_INS [dm6]	T	TTAATCTTAAG...	2.423e^-4	0.828	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
3L	11035943	3L_11035943_SNP [dm3] 3L_11042843_SNP [dm6]	G	A	2.423e^-4	0.828	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
3L	11238153	3L_11238153_SNP [dm3] 3L_11245053_SNP [dm6]	G	A	2.423e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	11666730	3L_11666730_SNP [dm3] 3L_11673630_SNP [dm6]	G	A	2.423e^-4	0.828	INTRON CG32085
3L	11957569	3L_11957569_SNP [dm3] 3L_11964469_SNP [dm6]	A	T	2.423e^-4	0.828	SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
3L	12317072	3L_12317072_SNP [dm3] 3L_12323972_SNP [dm6]	A	G	2.423e^-4	0.828	INTERGENIC
3L	12317075	3L_12317075_SNP [dm3] 3L_12323975_SNP [dm6]	G	C	2.423e^-4	0.828	INTERGENIC
3L	12336645	3L_12336645_SNP [dm3] 3L_12343545_SNP [dm6]	C	T	2.423e^-4	0.828	INTRON CrzR
3L	12726214	3L_12726214_SNP [dm3] 3L_12733114_SNP [dm6]	C	A	2.423e^-4	0.828	DOWNSTREAM SmD1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	13083549	3L_13083549_SNP [dm3] 3L_13090449_SNP [dm6]	T	C	2.423e^-4	0.828	UPSTREAM CG11251 INTERGENIC
3L	13083629	3L_13083629_INS [dm3] 3L_13090529_INS [dm6]	T	TAGT	2.423e^-4	0.828	UPSTREAM CG11251 INTERGENIC
3L	13083797	3L_13083797_SNP [dm3] 3L_13090697_SNP [dm6]	T	C	2.423e^-4	0.828	UPSTREAM CG11251 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	13083798	3L_13083798_SNP [dm3] 3L_13090698_SNP [dm6]	T	C	2.423e^-4	0.828	UPSTREAM CG11251 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	13083834	3L_13083834_SNP [dm3] 3L_13090734_SNP [dm6]	A	G	2.423e^-4	0.828	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13083893	3L_13083893_SNP [dm3] 3L_13090793_SNP [dm6]	G	T	2.423e^-4	0.828	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13083921	3L_13083921_SNP [dm3] 3L_13090821_SNP [dm6]	C	A	2.423e^-4	0.828	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13083936	3L_13083936_SNP [dm3] 3L_13090836_SNP [dm6]	T	G	2.423e^-4	0.828	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13083945	3L_13083945_SNP [dm3] 3L_13090845_SNP [dm6]	T	A	2.423e^-4	0.828	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13083951	3L_13083951_SNP [dm3] 3L_13090851_SNP [dm6]	G	A	2.423e^-4	0.828	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13083989	3L_13083989_SNP [dm3] 3L_13090889_SNP [dm6]	T	A	2.423e^-4	0.828	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13084013	3L_13084013_SNP [dm3] 3L_13090913_SNP [dm6]	A	G	2.423e^-4	0.828	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13084024	3L_13084024_SNP [dm3] 3L_13090924_SNP [dm6]	T	A	2.423e^-4	0.828	UPSTREAM CG11251 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13084247	3L_13084247_SNP [dm3] 3L_13091147_SNP [dm6]	A	G	2.423e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	13113297	3L_13113297_SNP [dm3] 3L_13120197_SNP [dm6]	A	G	2.423e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	13168245	3L_13168245_SNP [dm3] 3L_13175145_SNP [dm6]	G	A	2.423e^-4	0.828	NON_SYNONYMOUS_CODING snky	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13475248	3L_13475248_SNP [dm3] 3L_13482148_SNP [dm6]	G	A	2.423e^-4	0.828	SYNONYMOUS_CODING stv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13590189	3L_13590189_SNP [dm3] 3L_13597089_SNP [dm6]	A	G	2.423e^-4	0.828	INTRON bru-3
3L	13590222	3L_13590222_SNP [dm3] 3L_13597122_SNP [dm6]	A	T	2.423e^-4	0.828	INTRON bru-3
3L	1440799	3L_1440799_SNP [dm3] 3L_1440799_SNP [dm6]	T	C	2.423e^-4	0.828	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
3L	15505500	3L_15505500_SNP [dm3] 3L_15512400_SNP [dm6]	A	G	2.423e^-4	0.828	UTR_3_PRIME Eip71CD INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1564818	3L_1564818_SNP [dm3] 3L_1564818_SNP [dm6]	T	A	2.423e^-4	0.828	UPSTREAM CG12003 INTRON CG7879
3L	1572519	3L_1572519_SNP [dm3] 3L_1572519_SNP [dm6]	T	C	2.423e^-4	0.828	SPLICE_SITE_REGION CG12004 INTRON CG12004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1744676	3L_1744676_SNP [dm3] 3L_1744676_SNP [dm6]	C	T	2.423e^-4	0.828	SYNONYMOUS_CODING Gk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18601161	3L_18601161_SNP [dm3] 3L_18608061_SNP [dm6]	C	A	2.423e^-4	0.828	NON_SYNONYMOUS_CODING CG18231 DOWNSTREAM CG18233 INTRON CG4174 & 1 other
3L	18603512	3L_18603512_SNP [dm3] 3L_18610412_SNP [dm6]	G	A	2.423e^-4	0.828	DOWNSTREAM CG18231 INTRON CG4174 & 2 others
3L	18603513	3L_18603513_SNP [dm3] 3L_18610413_SNP [dm6]	G	C	2.423e^-4	0.828	DOWNSTREAM CG18231 INTRON CG4174 & 2 others
3L	18604283	3L_18604283_SNP [dm3] 3L_18611183_SNP [dm6]	T	C	2.423e^-4	0.828	NON_SYNONYMOUS_CODING CG32201 UPSTREAM CG32199 INTRON CG4174 & 1 other
3L	18604296	3L_18604296_SNP [dm3] 3L_18611196_SNP [dm6]	A	G	2.423e^-4	0.828	SYNONYMOUS_CODING CG32201 UPSTREAM CG32199 INTRON CG4174 & 1 other
3L	18605784	3L_18605784_SNP [dm3] 3L_18612684_SNP [dm6]	T	C	2.423e^-4	0.828	SYNONYMOUS_CODING CG32199 DOWNSTREAM CG32201 INTRON CG4174 & 1 other
3L	18605889	3L_18605889_SNP [dm3] 3L_18612789_SNP [dm6]	G	T	2.423e^-4	0.828	DOWNSTREAM CG32201 INTRON CG4174 & 2 others
3L	18605890	3L_18605890_SNP [dm3] 3L_18612790_SNP [dm6]	A	T	2.423e^-4	0.828	DOWNSTREAM CG32201 INTRON CG4174 & 2 others
3L	18623855	3L_18623855_SNP [dm3] 3L_18630755_SNP [dm6]	G	T	2.423e^-4	0.828	INTRON MYPT-75D	TF binding site mE1_TFBS_HSA
3L	18656288	3L_18656288_SNP [dm3] 3L_18663188_SNP [dm6]	G	A	2.423e^-4	0.828	SYNONYMOUS_CODING MYPT-75D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18677219	3L_18677219_SNP [dm3] 3L_18684119_SNP [dm6]	T	C	2.423e^-4	0.828	UPSTREAM Chmp1 DOWNSTREAM Cyp12c1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18677249	3L_18677249_SNP [dm3] 3L_18684149_SNP [dm6]	C	T	2.423e^-4	0.828	UPSTREAM Chmp1 DOWNSTREAM Cyp12c1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18678524	3L_18678524_SNP [dm3] 3L_18685424_SNP [dm6]	T	C	2.423e^-4	0.828	SYNONYMOUS_CODING Cyp12c1
3L	19176507	3L_19176507_SNP [dm3] 3L_19183407_SNP [dm6]	A	C	2.423e^-4	0.828	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Ubx
3L	19223903	3L_19223903_SNP [dm3] 3L_19230803_SNP [dm6]	A	G	2.423e^-4	0.828	DOWNSTREAM CR43893 INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	2462802	3L_2462802_SNP [dm3] 3L_2462802_SNP [dm6]	G	A	2.423e^-4	0.828	UPSTREAM CG45186 INTRON CG45186
3L	3506014	3L_3506014_SNP [dm3] 3L_3506014_SNP [dm6]	T	C	2.423e^-4	0.828	DOWNSTREAM CG42324 INTRON CG42324	TF binding site mE1_TFBS_cad
3L	3506063	3L_3506063_DEL [dm3] 3L_3506063_DEL [dm6]	TC	T	2.423e^-4	0.828	DOWNSTREAM CG42324 INTRON CG42324	TF binding site mE1_TFBS_cad
3L	3506067	3L_3506067_SNP [dm3] 3L_3506067_SNP [dm6]	G	T	2.423e^-4	0.828	SPLICE_SITE_REGION CG42324 DOWNSTREAM CG42324 INTRON CG42324	TF binding site mE1_TFBS_cad
3L	3638568	3L_3638568_SNP [dm3] 3L_3638568_SNP [dm6]	G	C	2.423e^-4	0.828	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	3638821	3L_3638821_SNP [dm3] 3L_3638821_SNP [dm6]	G	A	2.423e^-4	0.828	INTRON dar1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3638831	3L_3638831_SNP [dm3] 3L_3638831_SNP [dm6]	T	G	2.423e^-4	0.828	INTRON dar1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3638871	3L_3638871_SNP [dm3] 3L_3638871_SNP [dm6]	C	T	2.423e^-4	0.828	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4342609	3L_4342609_SNP [dm3] 3L_4342609_SNP [dm6]	A	G	2.423e^-4	0.828	INTRON Cip4
3L	4342712	3L_4342712_SNP [dm3] 3L_4342712_SNP [dm6]	A	G	2.423e^-4	0.828	INTRON Cip4
3L	4342752	3L_4342752_SNP [dm3] 3L_4342752_SNP [dm6]	C	T	2.423e^-4	0.828	INTRON Cip4
3L	4436327	3L_4436327_INS [dm3] 3L_4436327_INS [dm6]	A	ACAATA	2.423e^-4	0.828	UPSTREAM CG15021 DOWNSTREAM nAChRbeta1 INTERGENIC
3L	4436384	3L_4436384_SNP [dm3] 3L_4436384_SNP [dm6]	C	T	2.423e^-4	0.828	UPSTREAM CG15021 DOWNSTREAM nAChRbeta1 INTERGENIC
3L	4650595	3L_4650595_SNP [dm3] 3L_4650595_SNP [dm6]	C	T	2.423e^-4	0.828	SYNONYMOUS_CODING axo DOWNSTREAM CG32238
3L	4913437	3L_4913437_SNP [dm3] 3L_4913437_SNP [dm6]	C	T	2.423e^-4	0.828	INTRON Rh50
3L	5817273	3L_5817273_SNP [dm3] 3L_5824173_SNP [dm6]	A	T	2.423e^-4	0.828	INTRON vn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5817352	3L_5817352_SNP [dm3] 3L_5824252_SNP [dm6]	C	A	2.423e^-4	0.828	INTRON vn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5887580	3L_5887580_SNP [dm3] 3L_5894480_SNP [dm6]	A	T	2.423e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5889910	3L_5889910_SNP [dm3] 3L_5896810_SNP [dm6]	T	C	2.423e^-4	0.828	SYNONYMOUS_CODING Pole2 UPSTREAM CG5592	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5889928	3L_5889928_SNP [dm3] 3L_5896828_SNP [dm6]	C	T	2.423e^-4	0.828	SYNONYMOUS_CODING Pole2 UPSTREAM CG5592	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5890015	3L_5890015_SNP [dm3] 3L_5896915_SNP [dm6]	C	T	2.423e^-4	0.828	SYNONYMOUS_CODING Pole2 UPSTREAM CG5592	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5890030	3L_5890030_SNP [dm3] 3L_5896930_SNP [dm6]	T	G	2.423e^-4	0.828	SYNONYMOUS_CODING Pole2 UPSTREAM CG5592	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5890051	3L_5890051_SNP [dm3] 3L_5896951_SNP [dm6]	A	G	2.423e^-4	0.828	SYNONYMOUS_CODING Pole2 UPSTREAM CG5592	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5890120	3L_5890120_SNP [dm3] 3L_5897020_SNP [dm6]	G	A	2.423e^-4	0.828	SYNONYMOUS_CODING Pole2 UPSTREAM CG5592	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5890144	3L_5890144_SNP [dm3] 3L_5897044_SNP [dm6]	A	T	2.423e^-4	0.828	SYNONYMOUS_CODING Pole2 UPSTREAM CG5592	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5890366	3L_5890366_SNP [dm3] 3L_5897266_SNP [dm6]	A	G	2.423e^-4	0.828	SYNONYMOUS_CODING Pole2 UPSTREAM CG5592	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5890441	3L_5890441_SNP [dm3] 3L_5897341_SNP [dm6]	T	C	2.423e^-4	0.828	SYNONYMOUS_CODING Pole2 UPSTREAM CG5592	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5890496	3L_5890496_DEL [dm3] 3L_5897396_DEL [dm6]	TT	T	2.423e^-4	0.828	UTR_5_PRIME Pole2 UPSTREAM CG5592	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5890513	3L_5890513_SNP [dm3] 3L_5897413_SNP [dm6]	T	G	2.423e^-4	0.828	UTR_5_PRIME Pole2 UPSTREAM CG5592	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5898201	3L_5898201_SNP [dm3] 3L_5905101_SNP [dm6]	T	G	2.423e^-4	0.828	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486
3L	5898225	3L_5898225_SNP [dm3] 3L_5905125_SNP [dm6]	A	G	2.423e^-4	0.828	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486
3L	5898231	3L_5898231_SNP [dm3] 3L_5905131_SNP [dm6]	T	C	2.423e^-4	0.828	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486
3L	5898255	3L_5898255_SNP [dm3] 3L_5905155_SNP [dm6]	T	A	2.423e^-4	0.828	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486
3L	5898432	3L_5898432_SNP [dm3] 3L_5905332_SNP [dm6]	A	C	2.423e^-4	0.828	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486
3L	5898772	3L_5898772_SNP [dm3] 3L_5905672_SNP [dm6]	G	C	2.423e^-4	0.828	NON_SYNONYMOUS_CODING CG10486 INTRON CG10486
3L	5904291	3L_5904291_INS [dm3] 3L_5911191_INS [dm6]	T	TATGT	2.423e^-4	0.828	INTRON CG13288
3L	6904140	3L_6904140_SNP [dm3] 3L_6911040_SNP [dm6]	C	T	2.423e^-4	0.828	DOWNSTREAM Prat2 INTERGENIC
3L	7023974	3L_7023974_SNP [dm3] 3L_7030874_SNP [dm6]	A	C	2.423e^-4	0.828	INTRON Mp
3L	7026807	3L_7026807_SNP [dm3] 3L_7033707_SNP [dm6]	G	A	2.423e^-4	0.828	INTRON Mp
3L	7026839	3L_7026839_SNP [dm3] 3L_7033739_SNP [dm6]	G	T	2.423e^-4	0.828	INTRON Mp
3L	7063083	3L_7063083_SNP [dm3] 3L_7069983_SNP [dm6]	C	A	2.423e^-4	0.828	UPSTREAM CG32391 INTRON CG8641
3L	7741540	3L_7741540_SNP [dm3] 3L_7748440_SNP [dm6]	C	T	2.423e^-4	0.828	NON_SYNONYMOUS_CODING CG13685 UTR_3_PRIME CG13685 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7934653	3L_7934653_SNP [dm3] 3L_7941553_SNP [dm6]	T	A	2.423e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8004862	3L_8004862_SNP [dm3] 3L_8011762_SNP [dm6]	A	G	2.423e^-4	0.828	INTRON nmo
3L	8004877	3L_8004877_INS [dm3] 3L_8011777_INS [dm6]	T	TTGT	2.423e^-4	0.828	INTRON nmo
3L	8203273	3L_8203273_SNP [dm3] 3L_8210173_SNP [dm6]	T	C	2.423e^-4	0.828	SYNONYMOUS_CODING CG32364
3L	8276362	3L_8276362_SNP [dm3] 3L_8283262_SNP [dm6]	A	G	2.423e^-4	0.828	DOWNSTREAM Dscam4 INTRON cert
3L	8597660	3L_8597660_SNP [dm3] 3L_8604560_SNP [dm6]	G	T	2.423e^-4	0.828	UPSTREAM CG6282 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8597692	3L_8597692_SNP [dm3] 3L_8604592_SNP [dm6]	C	G	2.423e^-4	0.828	UPSTREAM CG6282 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8598258	3L_8598258_SNP [dm3] 3L_8605158_SNP [dm6]	T	G	2.423e^-4	0.828	INTRON CG6282	TF binding site BDTNP1_TFBS_dl
3L	8598259	3L_8598259_SNP [dm3] 3L_8605159_SNP [dm6]	C	T	2.423e^-4	0.828	INTRON CG6282	TF binding site BDTNP1_TFBS_dl
3L	871144	3L_871144_SNP [dm3] 3L_871144_SNP [dm6]	G	A	2.423e^-4	0.828	UTR_3_PRIME CG12502 UPSTREAM CG32479 DOWNSTREAM CG12502	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	8730967	3L_8730967_SNP [dm3] 3L_8737867_SNP [dm6]	C	T	2.423e^-4	0.828	UTR_5_PRIME Prm INTRON Prm	TF binding site mE1_TFBS_cad
3L	8730969	3L_8730969_SNP [dm3] 3L_8737869_SNP [dm6]	T	C	2.423e^-4	0.828	UTR_5_PRIME Prm INTRON Prm	TF binding site mE1_TFBS_cad
3L	8794776	3L_8794776_SNP [dm3] 3L_8801676_SNP [dm6]	G	T	2.423e^-4	0.828	SYNONYMOUS_CODING CG13311 UPSTREAM CG34426
3L	9012005	3L_9012005_SNP [dm3] 3L_9018905_SNP [dm6]	C	T	2.423e^-4	0.828	UTR_5_PRIME Doc2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9012070	3L_9012070_SNP [dm3] 3L_9018970_SNP [dm6]	C	A	2.423e^-4	0.828	UTR_5_PRIME Doc2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9715358	3L_9715358_SNP [dm3] 3L_9722258_SNP [dm6]	C	T	2.423e^-4	0.828	SYNONYMOUS_CODING nbs	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12855924	3R_12855924_SNP [dm3] 3R_17030202_SNP [dm6]	G	C	2.423e^-4	0.828	NON_SYNONYMOUS_CODING CG5225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12895549	3R_12895549_SNP [dm3] 3R_17069827_SNP [dm6]	A	C	2.423e^-4	0.828	UTR_3_PRIME Dad DOWNSTREAM Ns1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13885575	3R_13885575_DEL [dm3] 3R_18059853_DEL [dm6]	CTGGC	C	2.423e^-4	0.828	INTERGENIC
3R	14705608	3R_14705608_SNP [dm3] 3R_18879886_SNP [dm6]	A	G	2.423e^-4	0.828	INTERGENIC
3R	14705611	3R_14705611_SNP [dm3] 3R_18879889_SNP [dm6]	C	A	2.423e^-4	0.828	INTERGENIC
3R	15671126	3R_15671126_SNP [dm3] 3R_19845404_SNP [dm6]	T	C	2.423e^-4	0.828	INTERGENIC
3R	15671273	3R_15671273_SNP [dm3] 3R_19845551_SNP [dm6]	G	A	2.423e^-4	0.828	INTERGENIC
3R	16862586	3R_16862586_SNP [dm3] 3R_21036864_SNP [dm6]	T	A	2.423e^-4	0.828	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
3R	16910063	3R_16910063_SNP [dm3] 3R_21084341_SNP [dm6]	A	C	2.423e^-4	0.828	INTRON RhoGAP93B
3R	16910079	3R_16910079_SNP [dm3] 3R_21084357_SNP [dm6]	C	T	2.423e^-4	0.828	SYNONYMOUS_CODING RhoGAP93B
3R	17557645	3R_17557645_SNP [dm3] 3R_21731923_SNP [dm6]	C	A	2.423e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	17764762	3R_17764762_INS [dm3] 3R_21939040_INS [dm6]	T	TCTATCT	2.423e^-4	0.828	INTERGENIC
3R	19447129	3R_19447129_SNP [dm3] 3R_23621407_SNP [dm6]	A	G	2.423e^-4	0.828	INTRON CG31145
3R	19915578	3R_19915578_DEL [dm3] 3R_24089856_DEL [dm6]	CGAC	C	2.423e^-4	0.828	INTRON 4EHP
3R	19915594	3R_19915594_SNP [dm3] 3R_24089872_SNP [dm6]	T	C	2.423e^-4	0.828	INTRON 4EHP
3R	21474040	3R_21474040_SNP [dm3] 3R_25648318_SNP [dm6]	C	T	2.423e^-4	0.828	START_GAINED jigr1 UTR_5_PRIME jigr1 INTRON jigr1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3R	21474045	3R_21474045_SNP [dm3] 3R_25648323_SNP [dm6]	A	C	2.423e^-4	0.828	UTR_5_PRIME jigr1 INTRON jigr1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3R	21474058	3R_21474058_DEL [dm3] 3R_25648336_DEL [dm6]	GA	G	2.423e^-4	0.828	UTR_5_PRIME jigr1 INTRON jigr1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3R	21474066	3R_21474066_SNP [dm3] 3R_25648344_SNP [dm6]	A	T	2.423e^-4	0.828	UTR_5_PRIME jigr1 INTRON jigr1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3R	22781449	3R_22781449_SNP [dm3] 3R_26955727_SNP [dm6]	A	C	2.423e^-4	0.828	INTRON CG6330
3R	24726405	3R_24726405_SNP [dm3] 3R_28900683_SNP [dm6]	G	C	2.423e^-4	0.828	INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3343933	3R_3343933_SNP [dm3] 3R_7518211_SNP [dm6]	T	G	2.423e^-4	0.828	DOWNSTREAM Ubc84D INTERGENIC
3R	3344069	3R_3344069_SNP [dm3] 3R_7518347_SNP [dm6]	A	T	2.423e^-4	0.828	DOWNSTREAM Ubc84D INTERGENIC
3R	4638725	3R_4638725_SNP [dm3] 3R_8813003_SNP [dm6]	A	C	2.423e^-4	0.828	DOWNSTREAM CG9821 INTRON CG9837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	8554241	3R_8554241_SNP [dm3] 3R_12728519_SNP [dm6]	A	C	2.423e^-4	0.828	DOWNSTREAM CR44231 INTERGENIC
3R	8554249	3R_8554249_SNP [dm3] 3R_12728527_SNP [dm6]	G	T	2.423e^-4	0.828	DOWNSTREAM CR44231 INTERGENIC
X	11563692	X_11563692_SNP [dm3] X_11669659_SNP [dm6]	C	T	2.423e^-4	0.828	SYNONYMOUS_CODING Ptp10D
X	12258212	X_12258212_INS [dm3] X_12364179_INS [dm6]	T	TGTGATGT	2.423e^-4	0.828	INTERGENIC
X	12424856	X_12424856_SNP [dm3] X_12530823_SNP [dm6]	G	A	2.423e^-4	0.828	INTRON CG43921
X	16098077	X_16098077_SNP [dm3] X_16204044_SNP [dm6]	C	A	2.423e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	1649942	X_1649942_SNP [dm3] X_1755909_SNP [dm6]	A	C	2.423e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	17505665	X_17505665_SNP [dm3] X_17611632_SNP [dm6]	G	A	2.423e^-4	0.828	INTERGENIC
X	17505689	X_17505689_SNP [dm3] X_17611656_SNP [dm6]	C	T	2.423e^-4	0.828	INTERGENIC
X	17505874	X_17505874_SNP [dm3] X_17611841_SNP [dm6]	T	G	2.423e^-4	0.828	INTERGENIC
X	17505882	X_17505882_SNP [dm3] X_17611849_SNP [dm6]	A	T	2.423e^-4	0.828	INTERGENIC
X	17505928	X_17505928_SNP [dm3] X_17611895_SNP [dm6]	G	A	2.423e^-4	0.828	INTERGENIC
X	17505934	X_17505934_INS [dm3] X_17611901_INS [dm6]	T	TGAA	2.423e^-4	0.828	INTERGENIC
X	17505936	X_17505936_SNP [dm3] X_17611903_SNP [dm6]	T	A	2.423e^-4	0.828	INTERGENIC
X	17505942	X_17505942_SNP [dm3] X_17611909_SNP [dm6]	C	T	2.423e^-4	0.828	INTERGENIC
X	17505945	X_17505945_DEL [dm3] X_17611912_DEL [dm6]	AA	A	2.423e^-4	0.828	INTERGENIC
X	17505960	X_17505960_SNP [dm3] X_17611927_SNP [dm6]	A	T	2.423e^-4	0.828	INTERGENIC
X	17506004	X_17506004_SNP [dm3] X_17611971_SNP [dm6]	T	G	2.423e^-4	0.828	INTERGENIC
X	17923222	X_17923222_SNP [dm3] X_18029189_SNP [dm6]	G	A	2.423e^-4	0.828	DOWNSTREAM CG6867 INTRON Sh
X	17923280	X_17923280_SNP [dm3] X_18029247_SNP [dm6]	C	T	2.423e^-4	0.828	DOWNSTREAM CG6867 INTRON Sh
X	17923283	X_17923283_SNP [dm3] X_18029250_SNP [dm6]	G	A	2.423e^-4	0.828	DOWNSTREAM CG6867 INTRON Sh
X	17923339	X_17923339_SNP [dm3] X_18029306_SNP [dm6]	A	T	2.423e^-4	0.828	INTRON Sh
X	17923383	X_17923383_SNP [dm3] X_18029350_SNP [dm6]	T	C	2.423e^-4	0.828	INTRON Sh
X	18353219	X_18353219_SNP [dm3] X_18459186_SNP [dm6]	A	C	2.423e^-4	0.828	UTR_3_PRIME CG43843 INTRON CG32547
X	18353272	X_18353272_SNP [dm3] X_18459239_SNP [dm6]	C	G	2.423e^-4	0.828	UTR_3_PRIME CG43843 INTRON CG32547
X	18353665	X_18353665_SNP [dm3] X_18459632_SNP [dm6]	T	C	2.423e^-4	0.828	NON_SYNONYMOUS_CODING CG43843 INTRON CG32547
X	18446153	X_18446153_SNP [dm3] X_18552120_SNP [dm6]	G	T	2.423e^-4	0.828	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18481772	X_18481772_SNP [dm3] X_18587739_SNP [dm6]	T	C	2.423e^-4	0.828	UPSTREAM CR43492 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18975610	X_18975610_SNP [dm3] X_19081577_SNP [dm6]	T	A	2.423e^-4	0.828	UPSTREAM CG14191 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	19632605	X_19632605_SNP [dm3] X_19738572_SNP [dm6]	T	G	2.423e^-4	0.828	UTR_3_PRIME CG14234
X	20773594	X_20773594_SNP [dm3] X_20902567_SNP [dm6]	C	A	2.423e^-4	0.828	INTRON shakB
X	20774289	X_20774289_SNP [dm3] X_20903262_SNP [dm6]	A	T	2.423e^-4	0.828	INTRON shakB
X	20774304	X_20774304_SNP [dm3] X_20903277_SNP [dm6]	T	C	2.423e^-4	0.828	INTRON shakB
X	20774476	X_20774476_SNP [dm3] X_20903449_SNP [dm6]	T	A	2.423e^-4	0.828	INTRON shakB
X	2100742	X_2100742_SNP [dm3] X_2206709_SNP [dm6]	A	G	2.423e^-4	0.828	INTRON msta
X	2100839	X_2100839_SNP [dm3] X_2206806_SNP [dm6]	A	T	2.423e^-4	0.828	INTRON msta
X	2100920	X_2100920_SNP [dm3] X_2206887_SNP [dm6]	T	C	2.423e^-4	0.828	INTRON msta
X	2100928	X_2100928_SNP [dm3] X_2206895_SNP [dm6]	T	A	2.423e^-4	0.828	INTRON msta
X	2101260	X_2101260_SNP [dm3] X_2207227_SNP [dm6]	A	G	2.423e^-4	0.828	INTRON msta
X	2101397	X_2101397_SNP [dm3] X_2207364_SNP [dm6]	A	C	2.423e^-4	0.828	INTRON msta
X	2101512	X_2101512_SNP [dm3] X_2207479_SNP [dm6]	G	T	2.423e^-4	0.828	INTRON msta	TF binding site mE1_TFBS_chinmo
X	2101515	X_2101515_INS [dm3] X_2207482_INS [dm6]	G	GCTGAAGAATTGGGTCAAGG...	2.423e^-4	0.828	INTRON msta	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2101524	X_2101524_SNP [dm3] X_2207491_SNP [dm6]	G	A	2.423e^-4	0.828	INTRON msta	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2101795	X_2101795_SNP [dm3] X_2207762_SNP [dm6]	C	G	2.423e^-4	0.828	SYNONYMOUS_CODING msta INTRON msta	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	2102080	X_2102080_SNP [dm3] X_2208047_SNP [dm6]	T	C	2.423e^-4	0.828	SYNONYMOUS_CODING msta INTRON msta	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	2102335	X_2102335_SNP [dm3] X_2208302_SNP [dm6]	G	T	2.423e^-4	0.828	SYNONYMOUS_CODING msta INTRON msta	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2102846	X_2102846_SNP [dm3] X_2208813_SNP [dm6]	G	A	2.423e^-4	0.828	UPSTREAM msta INTRON msta	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2108143	X_2108143_SNP [dm3] X_2214110_SNP [dm6]	C	T	2.423e^-4	0.828	UPSTREAM msta DOWNSTREAM Vinc INTERGENIC
X	2108310	X_2108310_DEL [dm3] X_2214277_DEL [dm6]	CGAAAGGAA	C	2.423e^-4	0.828	UPSTREAM msta DOWNSTREAM Vinc INTERGENIC
X	2108378	X_2108378_DEL [dm3] X_2214345_DEL [dm6]	TT	T	2.423e^-4	0.828	UPSTREAM msta DOWNSTREAM Vinc INTERGENIC
X	2108785	X_2108785_SNP [dm3] X_2214752_SNP [dm6]	T	A	2.423e^-4	0.828	UTR_3_PRIME Vinc UPSTREAM msta
X	2109120	X_2109120_SNP [dm3] X_2215087_SNP [dm6]	G	A	2.423e^-4	0.828	SYNONYMOUS_CODING Vinc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	2109842	X_2109842_SNP [dm3] X_2215809_SNP [dm6]	T	C	2.423e^-4	0.828	SYNONYMOUS_CODING Vinc	TF binding site mE1_TFBS_chinmo
X	2110125	X_2110125_SNP [dm3] X_2216092_SNP [dm6]	T	G	2.423e^-4	0.828	SYNONYMOUS_CODING Vinc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	2110188	X_2110188_SNP [dm3] X_2216155_SNP [dm6]	C	T	2.423e^-4	0.828	SYNONYMOUS_CODING Vinc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	2110227	X_2110227_SNP [dm3] X_2216194_SNP [dm6]	A	G	2.423e^-4	0.828	SYNONYMOUS_CODING Vinc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	2110518	X_2110518_SNP [dm3] X_2216485_SNP [dm6]	G	A	2.423e^-4	0.828	SYNONYMOUS_CODING Vinc	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	2110773	X_2110773_SNP [dm3] X_2216740_SNP [dm6]	A	G	2.423e^-4	0.828	SYNONYMOUS_CODING Vinc	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	2111019	X_2111019_SNP [dm3] X_2216986_SNP [dm6]	T	C	2.423e^-4	0.828	SYNONYMOUS_CODING Vinc	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	2111292	X_2111292_SNP [dm3] X_2217259_SNP [dm6]	C	G	2.423e^-4	0.828	SYNONYMOUS_CODING Vinc	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	2111388	X_2111388_SNP [dm3] X_2217355_SNP [dm6]	T	C	2.423e^-4	0.828	SYNONYMOUS_CODING Vinc	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	2111754	X_2111754_SNP [dm3] X_2217721_SNP [dm6]	T	C	2.423e^-4	0.828	SYNONYMOUS_CODING Vinc	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	2111856	X_2111856_SNP [dm3] X_2217823_SNP [dm6]	T	C	2.423e^-4	0.828	SYNONYMOUS_CODING Vinc	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	2112258	X_2112258_DEL [dm3] X_2218225_DEL [dm6]	GGAATCGGCCT...	G	2.423e^-4	0.828	INTRON Vinc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	2112292	X_2112292_SNP [dm3] X_2218259_SNP [dm6]	C	T	2.423e^-4	0.828	INTRON Vinc	TF binding site mE1_TFBS_chinmo
X	2112452	X_2112452_SNP [dm3] X_2218419_SNP [dm6]	G	A	2.423e^-4	0.828	INTRON Vinc	TF binding site mE1_TFBS_chinmo
X	2112479	X_2112479_DEL [dm3] X_2218446_DEL [dm6]	TGATTGAT	T	2.423e^-4	0.828	INTRON Vinc	TF binding site mE1_TFBS_chinmo
X	2112552	X_2112552_SNP [dm3] X_2218519_SNP [dm6]	G	A	2.423e^-4	0.828	INTRON Vinc	TF binding site mE1_TFBS_chinmo
X	2112641	X_2112641_SNP [dm3] X_2218608_SNP [dm6]	A	G	2.423e^-4	0.828	INTRON Vinc	TF binding site mE1_TFBS_chinmo
X	2112803	X_2112803_SNP [dm3] X_2218770_SNP [dm6]	T	C	2.423e^-4	0.828	INTRON Vinc	TF binding site mE1_TFBS_chinmo
X	2113603	X_2113603_SNP [dm3] X_2219570_SNP [dm6]	C	T	2.423e^-4	0.828	INTRON Vinc
X	2114618	X_2114618_SNP [dm3] X_2220585_SNP [dm6]	G	A	2.423e^-4	0.828	INTRON Vinc	TF binding site mE1_TFBS_sens
X	2114631	X_2114631_SNP [dm3] X_2220598_SNP [dm6]	G	C	2.423e^-4	0.828	INTRON Vinc	TF binding site mE1_TFBS_sens
X	2122283	X_2122283_SNP [dm3] X_2228250_SNP [dm6]	C	A	2.423e^-4	0.828	NON_SYNONYMOUS_CODING pcx	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2133188	X_2133188_SNP [dm3] X_2239155_SNP [dm6]	A	G	2.423e^-4	0.828	SYNONYMOUS_CODING kz	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2133338	X_2133338_SNP [dm3] X_2239305_SNP [dm6]	G	A	2.423e^-4	0.828	SYNONYMOUS_CODING kz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2133452	X_2133452_SNP [dm3] X_2239419_SNP [dm6]	T	A	2.423e^-4	0.828	SYNONYMOUS_CODING kz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2133471	X_2133471_SNP [dm3] X_2239438_SNP [dm6]	A	G	2.423e^-4	0.828	NON_SYNONYMOUS_CODING kz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2133554	X_2133554_SNP [dm3] X_2239521_SNP [dm6]	C	A	2.423e^-4	0.828	SYNONYMOUS_CODING kz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2135255	X_2135255_SNP [dm3] X_2241222_SNP [dm6]	C	T	2.423e^-4	0.828	SYNONYMOUS_CODING kz UPSTREAM fs_1_K10	TF binding site mE1_TFBS_sens
X	2135849	X_2135849_SNP [dm3] X_2241816_SNP [dm6]	C	T	2.423e^-4	0.828	UPSTREAM fs_1_K10 INTRON kz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	2137827	X_2137827_SNP [dm3] X_2243794_SNP [dm6]	A	G	2.423e^-4	0.828	INTRON fs_1_K10
X	2137829	X_2137829_DEL [dm3] X_2243796_DEL [dm6]	AT	A	2.423e^-4	0.828	INTRON fs_1_K10
X	2150671	X_2150671_SNP [dm3] X_2256638_SNP [dm6]	G	A	2.423e^-4	0.828	SYNONYMOUS_CODING CG3078	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	2150911	X_2150911_SNP [dm3] X_2256878_SNP [dm6]	C	G	2.423e^-4	0.828	SYNONYMOUS_CODING CG3078	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	2151058	X_2151058_SNP [dm3] X_2257025_SNP [dm6]	A	G	2.423e^-4	0.828	SYNONYMOUS_CODING CG3078	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	2151114	X_2151114_SNP [dm3] X_2257081_SNP [dm6]	G	T	2.423e^-4	0.828	SYNONYMOUS_CODING CG3078	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	2151906	X_2151906_SNP [dm3] X_2257873_SNP [dm6]	A	C	2.423e^-4	0.828	SPLICE_SITE_REGION CG3078 INTRON CG3078	TF binding site mE1_TFBS_chinmo
X	2152394	X_2152394_SNP [dm3] X_2258361_SNP [dm6]	C	T	2.423e^-4	0.828	SYNONYMOUS_CODING CG3078	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	2685616	X_2685616_INS [dm3] X_2791583_INS [dm6]	C	CATATCTTCAACATGTTC...	2.423e^-4	0.828	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2685641	X_2685641_SNP [dm3] X_2791608_SNP [dm6]	C	T	2.423e^-4	0.828	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3723968	X_3723968_SNP [dm3] X_3829935_SNP [dm6]	T	C	2.423e^-4	0.828	SYNONYMOUS_CODING CG2901 INTRON ec	TF binding site mE1_TFBS_sens
X	4638343	X_4638343_SNP [dm3] X_4744310_SNP [dm6]	A	T	2.423e^-4	0.828	INTERGENIC
X	4638357	X_4638357_SNP [dm3] X_4744324_SNP [dm6]	A	C	2.423e^-4	0.828	INTERGENIC
X	4638358	X_4638358_SNP [dm3] X_4744325_SNP [dm6]	C	T	2.423e^-4	0.828	INTERGENIC
X	4638370	X_4638370_SNP [dm3] X_4744337_SNP [dm6]	G	T	2.423e^-4	0.828	INTERGENIC
X	4638395	X_4638395_SNP [dm3] X_4744362_SNP [dm6]	C	T	2.423e^-4	0.828	INTERGENIC
X	4896515	X_4896515_SNP [dm3] X_5002482_SNP [dm6]	G	A	2.423e^-4	0.828	INTRON CR44833	regulatory region REDfly_CRMs
X	4896593	X_4896593_SNP [dm3] X_5002560_SNP [dm6]	A	G	2.423e^-4	0.828	INTRON CR44833	regulatory region REDfly_CRMs
X	6552885	X_6552885_SNP [dm3] X_6658852_SNP [dm6]	C	T	2.423e^-4	0.828	SYNONYMOUS_CODING l_1_G0148	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	6553034	X_6553034_SNP [dm3] X_6659001_SNP [dm6]	C	T	2.423e^-4	0.828	NON_SYNONYMOUS_CODING l_1_G0148	TF binding site BDTNP1_TFBS_twi
X	7938755	X_7938755_SNP [dm3] X_8044722_SNP [dm6]	A	G	2.423e^-4	0.828	DOWNSTREAM fs_1_h INTRON fs_1_h
2L	12479761	2L_12479761_SNP [dm3] 2L_12479761_SNP [dm6]	A	G	2.738e^-4	0.828	INTRON bun
2R	11055866	2R_11055866_SNP [dm3] 2R_15168361_SNP [dm6]	T	A	2.738e^-4	0.828	INTRON igl
2R	976823	2R_976823_SNP [dm3] 2R_5089318_SNP [dm6]	A	T	2.738e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8453012	3L_8453012_SNP [dm3] 3L_8459912_SNP [dm6]	C	T	2.738e^-4	0.828	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	13881052	2L_13881052_SNP [dm3] 2L_13881052_SNP [dm6]	G	A	2.935e^-4	0.828	INTRON CenG1A
2R	14978182	2R_14978182_SNP [dm3] 2R_19090677_SNP [dm6]	C	G	2.935e^-4	0.828	INTRON 5-HT1A
2R	9191398	2R_9191398_SNP [dm3] 2R_13303893_SNP [dm6]	G	A	2.935e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10474061	3L_10474061_SNP [dm3] 3L_10480961_SNP [dm6]	T	C	2.935e^-4	0.828	UPSTREAM A2bp1 INTERGENIC
3L	10474062	3L_10474062_SNP [dm3] 3L_10480962_SNP [dm6]	G	A	2.935e^-4	0.828	UPSTREAM A2bp1 INTERGENIC
3L	10972275	3L_10972275_SNP [dm3] 3L_10979175_SNP [dm6]	G	C	2.935e^-4	0.828	UPSTREAM CR45745 INTERGENIC
3L	11436929	3L_11436929_SNP [dm3] 3L_11443829_SNP [dm6]	A	T	2.935e^-4	0.828	DOWNSTREAM CR44549 INTERGENIC
3L	11523496	3L_11523496_SNP [dm3] 3L_11530396_SNP [dm6]	A	C	2.935e^-4	0.828	INTRON Mob2
3L	14205526	3L_14205526_SNP [dm3] 3L_14212426_SNP [dm6]	G	T	2.935e^-4	0.828	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
3L	14221430	3L_14221430_SNP [dm3] 3L_14228330_SNP [dm6]	A	T	2.935e^-4	0.828	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_sna
3L	14221435	3L_14221435_SNP [dm3] 3L_14228335_SNP [dm6]	G	T	2.935e^-4	0.828	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_sna
3L	14221439	3L_14221439_SNP [dm3] 3L_14228339_SNP [dm6]	A	T	2.935e^-4	0.828	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_sna
3L	14221442	3L_14221442_MNP [dm3] 3L_14228342_MNP [dm6]	TTG	AGC	2.935e^-4	0.828	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_sna
3L	18423206	3L_18423206_SNP [dm3] 3L_18430106_SNP [dm6]	G	A	2.935e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22679028	3R_22679028_SNP [dm3] 3R_26853306_SNP [dm6]	G	A	2.935e^-4	0.828	INTRON Lerp	TF binding site mE1_TFBS_chinmo
3R	9096964	3R_9096964_SNP [dm3] 3R_13271242_SNP [dm6]	A	G	2.935e^-4	0.828	SYNONYMOUS_CODING CG8449	TF binding site mE1_TFBS_sens
X	12305007	X_12305007_SNP [dm3] X_12410974_SNP [dm6]	T	C	2.935e^-4	0.828	DOWNSTREAM CG32652 INTERGENIC
X	16526619	X_16526619_SNP [dm3] X_16632586_SNP [dm6]	G	A	2.935e^-4	0.828	SYNONYMOUS_CODING Rok UPSTREAM CG9777 EXON CR45001
X	17222794	X_17222794_SNP [dm3] X_17328761_SNP [dm6]	A	G	2.935e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	17578810	X_17578810_SNP [dm3] X_17684777_SNP [dm6]	C	T	2.935e^-4	0.828	INTRON chas
X	18630464	X_18630464_SNP [dm3] X_18736431_SNP [dm6]	A	G	2.935e^-4	0.828	INTERGENIC
X	20773316	X_20773316_SNP [dm3] X_20902289_SNP [dm6]	G	A	2.935e^-4	0.828	INTRON shakB
2L	11453107	2L_11453107_SNP [dm3] 2L_11453107_SNP [dm6]	T	A	3.115e^-4	0.828	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	11453138	2L_11453138_SNP [dm3] 2L_11453138_SNP [dm6]	A	G	3.115e^-4	0.828	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	12714151	2L_12714151_SNP [dm3] 2L_12714151_SNP [dm6]	T	C	3.115e^-4	0.828	SYNONYMOUS_CODING CG5792 DOWNSTREAM CG5792
2L	1302328	2L_1302328_SNP [dm3] 2L_1302328_SNP [dm6]	A	G	3.115e^-4	0.828	INTERGENIC
2L	13730345	2L_13730345_SNP [dm3] 2L_13730345_SNP [dm6]	C	A	3.115e^-4	0.828	INTERGENIC
2L	13730359	2L_13730359_SNP [dm3] 2L_13730359_SNP [dm6]	T	G	3.115e^-4	0.828	INTERGENIC
2L	13970601	2L_13970601_SNP [dm3] 2L_13970601_SNP [dm6]	C	T	3.115e^-4	0.828	SYNONYMOUS_CODING NimB5 UPSTREAM NimB4
2L	15888725	2L_15888725_SNP [dm3] 2L_15888725_SNP [dm6]	T	C	3.115e^-4	0.828	NON_SYNONYMOUS_CODING Tep1 DOWNSTREAM CR31824
2L	16450200	2L_16450200_SNP [dm3] 2L_16450200_SNP [dm6]	C	T	3.115e^-4	0.828	SYNONYMOUS_CODING Idgf2 UPSTREAM Idgf3
2L	19878028	2L_19878028_SNP [dm3] 2L_19878028_SNP [dm6]	A	G	3.115e^-4	0.828	INTRON sick
2L	2545870	2L_2545870_SNP [dm3] 2L_2545870_SNP [dm6]	A	T	3.115e^-4	0.828	INTERGENIC
2L	2867298	2L_2867298_SNP [dm3] 2L_2867298_SNP [dm6]	C	T	3.115e^-4	0.828	INTRON CG2991
2L	3109429	2L_3109429_SNP [dm3] 2L_3109429_SNP [dm6]	T	A	3.115e^-4	0.828	UPSTREAM PpD6 INTRON toc	TF binding site mE1_TFBS_inv
2L	5333787	2L_5333787_SNP [dm3] 2L_5333787_SNP [dm6]	C	A	3.115e^-4	0.828	INTRON fusl
2L	5580546	2L_5580546_SNP [dm3] 2L_5580546_SNP [dm6]	C	T	3.115e^-4	0.828	NON_SYNONYMOUS_CODING CG14011	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5629434	2L_5629434_SNP [dm3] 2L_5629434_SNP [dm6]	C	A	3.115e^-4	0.828	INTRON CG31646	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi transposable element FlyBase
2L	5840771	2L_5840771_DEL [dm3] 2L_5840771_DEL [dm6]	TGGAGCTTAAA...	T	3.115e^-4	0.828	INTRON TrissinR
2L	5841414	2L_5841414_SNP [dm3] 2L_5841414_SNP [dm6]	C	T	3.115e^-4	0.828	INTRON TrissinR
2L	5890030	2L_5890030_SNP [dm3] 2L_5890030_SNP [dm6]	A	G	3.115e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	5934590	2L_5934590_SNP [dm3] 2L_5934590_SNP [dm6]	C	T	3.115e^-4	0.828	INTRON dsf	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	6165837	2L_6165837_SNP [dm3] 2L_6165837_SNP [dm6]	T	A	3.115e^-4	0.828	INTERGENIC
2L	7195963	2L_7195963_SNP [dm3] 2L_7195963_SNP [dm6]	C	T	3.115e^-4	0.828	SYNONYMOUS_CODING CG4502
2L	7708685	2L_7708685_DEL [dm3] 2L_7708685_DEL [dm6]	ATGTGATGTGAA...	A	3.115e^-4	0.828	INTRON CR44990 & 1 other
2L	7708724	2L_7708724_SNP [dm3] 2L_7708724_SNP [dm6]	C	T	3.115e^-4	0.828	SPLICE_SITE_REGION CR44990 SYNONYMOUS_CODING Tep3 EXON CR44990
2L	7708727	2L_7708727_SNP [dm3] 2L_7708727_SNP [dm6]	G	C	3.115e^-4	0.828	SYNONYMOUS_CODING Tep3 EXON CR44990
2L	7708730	2L_7708730_SNP [dm3] 2L_7708730_SNP [dm6]	C	A	3.115e^-4	0.828	SYNONYMOUS_CODING Tep3 EXON CR44990
2L	7708740	2L_7708740_SNP [dm3] 2L_7708740_SNP [dm6]	C	T	3.115e^-4	0.828	SYNONYMOUS_CODING Tep3 EXON CR44990
2L	7800690	2L_7800690_SNP [dm3] 2L_7800690_SNP [dm6]	T	A	3.115e^-4	0.828	UPSTREAM Herp DOWNSTREAM cdc14 INTRON r2d2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9721930	2L_9721930_SNP [dm3] 2L_9721930_SNP [dm6]	T	A	3.115e^-4	0.828	INTRON Nckx30C
2L	9722693	2L_9722693_SNP [dm3] 2L_9722693_SNP [dm6]	C	T	3.115e^-4	0.828	INTRON Nckx30C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10620283	2R_10620283_SNP [dm3] 2R_14732778_SNP [dm6]	A	T	3.115e^-4	0.828	INTERGENIC
2R	10680602	2R_10680602_SNP [dm3] 2R_14793097_SNP [dm6]	A	G	3.115e^-4	0.828	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10680625	2R_10680625_SNP [dm3] 2R_14793120_SNP [dm6]	A	G	3.115e^-4	0.828	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	14270926	2R_14270926_SNP [dm3] 2R_18383421_SNP [dm6]	T	C	3.115e^-4	0.828	UPSTREAM IM1 & 1 other INTERGENIC
2R	17005619	2R_17005619_SNP [dm3] 2R_21118114_SNP [dm6]	A	C	3.115e^-4	0.828	UPSTREAM CG9394 INTRON ktub	TF binding site mE1_TFBS_cad
2R	19541589	2R_19541589_SNP [dm3] 2R_23654066_SNP [dm6]	A	T	3.115e^-4	0.828	UTR_3_PRIME retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	3072434	2R_3072434_SNP [dm3] 2R_7184929_SNP [dm6]	A	G	3.115e^-4	0.828	SYNONYMOUS_CODING CG30384 INTRON pk
2R	6671683	2R_6671683_DEL [dm3] 2R_10784178_DEL [dm6]	TATAATAAATAATA...	T	3.115e^-4	0.828	INTRON CG33144 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	9291522	2R_9291522_SNP [dm3] 2R_13404017_SNP [dm6]	T	C	3.115e^-4	0.828	INTERGENIC
3L	17371450	3L_17371450_SNP [dm3] 3L_17378350_SNP [dm6]	G	C	3.115e^-4	0.828	SYNONYMOUS_CODING Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	18591616	3L_18591616_SNP [dm3] 3L_18598516_SNP [dm6]	A	G	3.115e^-4	0.828	DOWNSTREAM CR45390 INTERGENIC
3L	5999591	3L_5999591_SNP [dm3] 3L_6006491_SNP [dm6]	C	T	3.115e^-4	0.828	INTRON PVRAP
3L	7019795	3L_7019795_SNP [dm3] 3L_7026695_SNP [dm6]	A	T	3.115e^-4	0.828	SYNONYMOUS_CODING CG17744 INTRON Mp
3R	1050503	3R_1050503_SNP [dm3] 3R_5224781_SNP [dm6]	T	A	3.115e^-4	0.828	UTR_3_PRIME CG14664 DOWNSTREAM CG14664
3R	1050504	3R_1050504_SNP [dm3] 3R_5224782_SNP [dm6]	C	T	3.115e^-4	0.828	UTR_3_PRIME CG14664 DOWNSTREAM CG14664
3R	13922098	3R_13922098_SNP [dm3] 3R_18096376_SNP [dm6]	C	A	3.115e^-4	0.828	NON_SYNONYMOUS_CODING sr
3R	19652373	3R_19652373_DEL [dm3] 3R_23826651_DEL [dm6]	AGA	A	3.115e^-4	0.828	UPSTREAM CR43285 DOWNSTREAM snRNA:U1:95Cc INTRON CG34355	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19652377	3R_19652377_SNP [dm3] 3R_23826655_SNP [dm6]	A	G	3.115e^-4	0.828	UPSTREAM CR43285 DOWNSTREAM snRNA:U1:95Cc INTRON CG34355	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19652400	3R_19652400_SNP [dm3] 3R_23826678_SNP [dm6]	G	C	3.115e^-4	0.828	UPSTREAM CR43285 DOWNSTREAM snRNA:U1:95Cc INTRON CG34355	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12425813	X_12425813_SNP [dm3] X_12531780_SNP [dm6]	G	A	3.115e^-4	0.828	UPSTREAM CG43921 INTRON CG43921
X	17923299	X_17923299_SNP [dm3] X_18029266_SNP [dm6]	T	C	3.115e^-4	0.828	INTRON Sh
X	2685711	X_2685711_SNP [dm3] X_2791678_SNP [dm6]	T	A	3.115e^-4	0.828	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10447092	2L_10447092_SNP [dm3] 2L_10447092_SNP [dm6]	A	T	3.324e^-4	0.828	UPSTREAM loh INTRON loh
2L	10447108	2L_10447108_SNP [dm3] 2L_10447108_SNP [dm6]	T	A	3.324e^-4	0.828	UPSTREAM loh INTRON loh
2L	4030849	2L_4030849_SNP [dm3] 2L_4030849_SNP [dm6]	G	A	3.368e^-4	0.828	UPSTREAM ed INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11436885	3L_11436885_SNP [dm3] 3L_11443785_SNP [dm6]	T	A	3.368e^-4	0.828	DOWNSTREAM CR44549 INTERGENIC
3L	14629730	3L_14629730_SNP [dm3] 3L_14636630_SNP [dm6]	G	A	3.368e^-4	0.828	INTRON dlp	TF binding site BDTNP1_TFBS_dl
3R	10531398	3R_10531398_INS [dm3] 3R_14705676_INS [dm6]	G	GAG	3.368e^-4	0.828	INTRON kibra
3R	10828969	3R_10828969_SNP [dm3] 3R_15003247_SNP [dm6]	A	T	3.368e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12741885	3R_12741885_DEL [dm3] 3R_16916163_DEL [dm6]	CCAGGTAAGGTT...	G	3.368e^-4	0.828	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12741904	3R_12741904_SNP [dm3] 3R_16916182_SNP [dm6]	T	C	3.368e^-4	0.828	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12741914	3R_12741914_SNP [dm3] 3R_16916192_SNP [dm6]	A	C	3.368e^-4	0.828	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12741922	3R_12741922_SNP [dm3] 3R_16916200_SNP [dm6]	T	C	3.368e^-4	0.828	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12895729	3R_12895729_SNP [dm3] 3R_17070007_SNP [dm6]	C	T	3.368e^-4	0.828	UTR_3_PRIME Dad DOWNSTREAM Ns1	TF binding site mE1_TFBS_Trl
3R	13647553	3R_13647553_SNP [dm3] 3R_17821831_SNP [dm6]	T	A	3.368e^-4	0.828	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	13647556	3R_13647556_SNP [dm3] 3R_17821834_SNP [dm6]	A	G	3.368e^-4	0.828	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	16965524	3R_16965524_SNP [dm3] 3R_21139802_SNP [dm6]	G	A	3.368e^-4	0.828	SYNONYMOUS_CODING meigo UPSTREAM SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16965593	3R_16965593_SNP [dm3] 3R_21139871_SNP [dm6]	C	A	3.368e^-4	0.828	SYNONYMOUS_CODING meigo UPSTREAM SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16976076	3R_16976076_SNP [dm3] 3R_21150354_SNP [dm6]	C	T	3.368e^-4	0.828	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl
3R	22573714	3R_22573714_SNP [dm3] 3R_26747992_SNP [dm6]	G	T	3.368e^-4	0.828	INTERGENIC
3R	9098243	3R_9098243_SNP [dm3] 3R_13272521_SNP [dm6]	C	T	3.368e^-4	0.828	UPSTREAM CG8449 INTERGENIC	TF binding site mE1_TFBS_HSA
X	22369227	X_22369227_SNP [dm3] X_22967391_SNP [dm6]	G	A	3.368e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19097106	2L_19097106_SNP [dm3] 2L_19097106_SNP [dm6]	G	T	4.198e^-4	0.828	INTRON Lim3
2L	5959574	2L_5959574_SNP [dm3] 2L_5959574_SNP [dm6]	G	A	4.198e^-4	0.828	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC
2L	5959599	2L_5959599_SNP [dm3] 2L_5959599_SNP [dm6]	T	A	4.198e^-4	0.828	UTR_3_PRIME Vm26Aa UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa
2L	6111294	2L_6111294_SNP [dm3] 2L_6111294_SNP [dm6]	C	G	4.198e^-4	0.828	INTRON stai
2R	17756087	2R_17756087_SNP [dm3] 2R_21868582_SNP [dm6]	C	T	4.198e^-4	0.828	INTERGENIC
2R	17768708	2R_17768708_SNP [dm3] 2R_21881203_SNP [dm6]	T	C	4.198e^-4	0.828	DOWNSTREAM PpN58A INTRON Fili
3L	20056362	3L_20056362_SNP [dm3] 3L_20063262_SNP [dm6]	A	T	4.198e^-4	0.828	INTRON sNPF-R
2R	1346040	2R_1346040_SNP [dm3] 2R_5458535_SNP [dm6]	T	A	4.212e^-4	0.828	INTERGENIC
3L	12214778	3L_12214778_SNP [dm3] 3L_12221678_SNP [dm6]	T	A	4.212e^-4	0.828	INTRON app
3L	14205739	3L_14205739_SNP [dm3] 3L_14212639_SNP [dm6]	T	C	4.212e^-4	0.828	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3L	8005089	3L_8005089_INS [dm3] 3L_8011989_INS [dm6]	A	ACTAATTCAAG...	4.212e^-4	0.828	INTRON nmo
3R	1011884	3R_1011884_SNP [dm3] 3R_5186162_SNP [dm6]	A	T	4.212e^-4	0.828	INTRON cno
3R	12682075	3R_12682075_SNP [dm3] 3R_16856353_SNP [dm6]	A	G	4.212e^-4	0.828	UPSTREAM mir-iab-8 DOWNSTREAM iab-4 & 1 other INTRON iab-8 EXON iab-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	15788705	3R_15788705_SNP [dm3] 3R_19962983_SNP [dm6]	T	G	4.212e^-4	0.828	INTRON Hs6st
3R	22272746	3R_22272746_SNP [dm3] 3R_26447024_SNP [dm6]	G	A	4.212e^-4	0.828	INTRON tx
3R	22272760	3R_22272760_SNP [dm3] 3R_26447038_SNP [dm6]	A	G	4.212e^-4	0.828	INTRON tx
3R	22794517	3R_22794517_SNP [dm3] 3R_26968795_SNP [dm6]	T	C	4.212e^-4	0.828	INTRON CG5521
3R	26129350	3R_26129350_SNP [dm3] 3R_30303628_SNP [dm6]	C	G	4.212e^-4	0.828	INTRON hdc
3R	27447419	3R_27447419_SNP [dm3] 3R_31621697_SNP [dm6]	A	T	4.212e^-4	0.828	UPSTREAM kek6 DOWNSTREAM pasha INTRON pasha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	972526	3R_972526_SNP [dm3] 3R_5146804_SNP [dm6]	A	G	4.212e^-4	0.828	INTERGENIC
X	8241551	X_8241551_SNP [dm3] X_8347518_SNP [dm6]	A	G	4.212e^-4	0.828	INTRON nAChRalpha3
2L	13500721	2L_13500721_SNP [dm3] 2L_13500721_SNP [dm6]	G	A	4.991e^-4	0.828	UTR_3_PRIME B4 DOWNSTREAM CG42784	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	15664389	3R_15664389_INS [dm3] 3R_19838667_INS [dm6]	T	TT	5.009e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_Kr
2L	12156285	2L_12156285_SNP [dm3] 2L_12156285_SNP [dm6]	C	T	5.217e^-4	0.828	INTRON CG31760
X	343326	X_343326_SNP [dm3] X_449293_SNP [dm6]	A	T	5.217e^-4	0.828	INTRON CG32816	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	354311	X_354311_SNP [dm3] X_460278_SNP [dm6]	T	A	5.217e^-4	0.828	UPSTREAM ase INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14946273	2L_14946273_SNP [dm3] 2L_14946273_SNP [dm6]	T	C	5.238e^-4	0.828	INTRON CG42313
2L	14995108	2L_14995108_SNP [dm3] 2L_14995108_SNP [dm6]	A	G	5.238e^-4	0.828	INTRON mol	TF binding site BDTNP1_TFBS_dl
2L	2504717	2L_2504717_SNP [dm3] 2L_2504717_SNP [dm6]	G	A	5.238e^-4	0.828	INTERGENIC
2R	4383359	2R_4383359_SNP [dm3] 2R_8495854_SNP [dm6]	C	T	5.238e^-4	0.828	INTRON mtt
2R	5693929	2R_5693929_INS [dm3] 2R_9806424_INS [dm6]	T	TCAT	5.238e^-4	0.828	INTRON CG1688
2R	8656184	2R_8656184_SNP [dm3] 2R_12768679_SNP [dm6]	G	A	5.238e^-4	0.828	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	14473850	3L_14473850_SNP [dm3] 3L_14480750_SNP [dm6]	T	G	5.238e^-4	0.828	INTRON bbg
3L	14473854	3L_14473854_SNP [dm3] 3L_14480754_SNP [dm6]	A	C	5.238e^-4	0.828	INTRON bbg
3L	15590037	3L_15590037_SNP [dm3] 3L_15596937_SNP [dm6]	C	T	5.238e^-4	0.828	INTRON RhoGAP71E	TF binding site mE1_TFBS_inv
3L	15590038	3L_15590038_SNP [dm3] 3L_15596938_SNP [dm6]	A	T	5.238e^-4	0.828	INTRON RhoGAP71E	TF binding site mE1_TFBS_inv
3L	16232533	3L_16232533_SNP [dm3] 3L_16239433_SNP [dm6]	G	T	5.238e^-4	0.828	UTR_3_PRIME l_3_72Dr	TF binding site mE1_TFBS_cad
3L	18246833	3L_18246833_SNP [dm3] 3L_18253733_SNP [dm6]	G	A	5.238e^-4	0.828	DOWNSTREAM CheA75a INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	19092269	3L_19092269_DEL [dm3] 3L_19099169_DEL [dm6]	GTG	G	5.238e^-4	0.828	UTR_3_PRIME Gem2 DOWNSTREAM CG14079
3L	20013933	3L_20013933_SNP [dm3] 3L_20020833_SNP [dm6]	G	C	5.238e^-4	0.828	SYNONYMOUS_CODING kug	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2180948	3L_2180948_SNP [dm3] 3L_2180948_SNP [dm6]	C	T	5.238e^-4	0.828	INTERGENIC
3L	2180950	3L_2180950_SNP [dm3] 3L_2180950_SNP [dm6]	G	C	5.238e^-4	0.828	INTERGENIC
3L	2180954	3L_2180954_DEL [dm3] 3L_2180954_DEL [dm6]	TTATTGTG	T	5.238e^-4	0.828	INTERGENIC
3L	2902951	3L_2902951_SNP [dm3] 3L_2902951_SNP [dm6]	C	T	5.238e^-4	0.828	INTRON Shab
3L	3082679	3L_3082679_DEL [dm3] 3L_3082679_DEL [dm6]	CT	C	5.238e^-4	0.828	INTRON CG11486	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc
3L	487647	3L_487647_SNP [dm3] 3L_487647_SNP [dm6]	T	A	5.238e^-4	0.828	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10153502	3R_10153502_SNP [dm3] 3R_14327780_SNP [dm6]	A	G	5.238e^-4	0.828	UPSTREAM spn-B DOWNSTREAM CG3321 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	7108105	3R_7108105_SNP [dm3] 3R_11282383_SNP [dm6]	A	G	5.238e^-4	0.828	INTRON CR31386	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7108106	3R_7108106_SNP [dm3] 3R_11282384_SNP [dm6]	A	G	5.238e^-4	0.828	INTRON CR31386	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12908169	X_12908169_SNP [dm3] X_13014136_SNP [dm6]	C	T	5.238e^-4	0.828	INTRON rad
X	21074424	X_21074424_SNP [dm3] X_21203397_SNP [dm6]	A	T	5.238e^-4	0.828	UPSTREAM CG1724 INTERGENIC
X	21074429	X_21074429_INS [dm3] X_21203402_INS [dm6]	A	AG	5.238e^-4	0.828	UPSTREAM CG1724 INTERGENIC
X	22257928	X_22257928_SNP [dm3] X_22856092_SNP [dm6]	C	T	5.238e^-4	0.828	UPSTREAM fog INTRON CG42346	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
X	7905421	X_7905421_SNP [dm3] X_8011388_SNP [dm6]	T	C	5.238e^-4	0.828	INTRON Tbh
X	8523960	X_8523960_SNP [dm3] X_8629927_SNP [dm6]	T	G	5.238e^-4	0.828	DOWNSTREAM oc INTERGENIC	TF binding site mE1_TFBS_cad
3L	12786217	3L_12786217_SNP [dm3] 3L_12793117_SNP [dm6]	C	G	5.254e^-4	0.828	INTRON Atg1 & 1 other	TF binding site mE1_TFBS_inv
3L	12786225	3L_12786225_SNP [dm3] 3L_12793125_SNP [dm6]	C	T	5.254e^-4	0.828	INTRON Atg1 & 1 other	TF binding site mE1_TFBS_inv
3L	18560930	3L_18560930_SNP [dm3] 3L_18567830_SNP [dm6]	G	A	5.254e^-4	0.828	INTRON AstC-R1
3L	18560933	3L_18560933_SNP [dm3] 3L_18567833_SNP [dm6]	A	T	5.254e^-4	0.828	INTRON AstC-R1
3L	18560934	3L_18560934_SNP [dm3] 3L_18567834_SNP [dm6]	A	T	5.254e^-4	0.828	INTRON AstC-R1
X	3606740	X_3606740_SNP [dm3] X_3712707_SNP [dm6]	T	C	5.254e^-4	0.828	INTRON Rala
2R	19599000	2R_19599000_SNP [dm3] 2R_23711477_SNP [dm6]	A	G	5.275e^-4	0.828	INTERGENIC
3L	11332589	3L_11332589_SNP [dm3] 3L_11339489_SNP [dm6]	A	G	5.275e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11439252	3L_11439252_SNP [dm3] 3L_11446152_SNP [dm6]	G	T	5.275e^-4	0.828	NON_SYNONYMOUS_CODING CG7557
2L	11066133	2L_11066133_SNP [dm3] 2L_11066133_SNP [dm6]	G	A	5.436e^-4	0.828	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11066160	2L_11066160_SNP [dm3] 2L_11066160_SNP [dm6]	T	C	5.436e^-4	0.828	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6070859	2L_6070859_SNP [dm3] 2L_6070859_SNP [dm6]	C	A	5.436e^-4	0.828	UPSTREAM Kr-h2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2L	6070875	2L_6070875_SNP [dm3] 2L_6070875_SNP [dm6]	G	T	5.436e^-4	0.828	UPSTREAM Kr-h2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2L	9529047	2L_9529047_SNP [dm3] 2L_9529047_SNP [dm6]	G	A	5.436e^-4	0.828	NON_SYNONYMOUS_CODING CG31883 INTRON Oatp30B
2R	3832726	2R_3832726_SNP [dm3] 2R_7945221_SNP [dm6]	T	C	5.436e^-4	0.828	SYNONYMOUS_CODING CG34431 DOWNSTREAM CG34430 INTRON CG14764
2R	7623648	2R_7623648_SNP [dm3] 2R_11736143_SNP [dm6]	G	A	5.436e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
2R	7623651	2R_7623651_SNP [dm3] 2R_11736146_SNP [dm6]	T	C	5.436e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
3L	6551456	3L_6551456_SNP [dm3] 3L_6558356_SNP [dm6]	A	G	5.436e^-4	0.828	INTRON CG18769
3L	9486294	3L_9486294_SNP [dm3] 3L_9493194_SNP [dm6]	A	C	5.436e^-4	0.828	UPSTREAM CG32037 INTERGENIC
3R	20840705	3R_20840705_SNP [dm3] 3R_25014983_SNP [dm6]	G	T	5.436e^-4	0.828	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13500570	2L_13500570_SNP [dm3] 2L_13500570_SNP [dm6]	C	A	5.525e^-4	0.828	DOWNSTREAM B4 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10815198	2R_10815198_DEL [dm3] 2R_14927693_DEL [dm6]	ATTAAGGGGCA...	A	5.525e^-4	0.828	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15509119	3L_15509119_SNP [dm3] 3L_15516019_SNP [dm6]	T	A	5.525e^-4	0.828	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	15509123	3L_15509123_SNP [dm3] 3L_15516023_SNP [dm6]	T	C	5.525e^-4	0.828	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	15830349	3L_15830349_SNP [dm3] 3L_15837249_SNP [dm6]	G	T	5.525e^-4	0.828	DOWNSTREAM CG32150 INTRON CG15715	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	4350110	3L_4350110_SNP [dm3] 3L_4350110_SNP [dm6]	A	G	5.525e^-4	0.828	INTRON Cip4
3L	5423039	3L_5423039_SNP [dm3] 3L_5429939_SNP [dm6]	G	C	5.525e^-4	0.828	INTRON CG34391
X	8759585	X_8759585_SNP [dm3] X_8865552_SNP [dm6]	A	G	5.525e^-4	0.828	INTRON CG12075	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3R	12741946	3R_12741946_SNP [dm3] 3R_16916224_SNP [dm6]	G	C	5.999e^-4	0.828	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12741953	3R_12741953_SNP [dm3] 3R_16916231_SNP [dm6]	A	G	5.999e^-4	0.828	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12785079	3R_12785079_SNP [dm3] 3R_16959357_SNP [dm6]	T	C	5.999e^-4	0.828	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10415367	2L_10415367_SNP [dm3] 2L_10415367_SNP [dm6]	G	A	6.030e^-4	0.828	SYNONYMOUS_CODING Klp31E
2L	10415370	2L_10415370_SNP [dm3] 2L_10415370_SNP [dm6]	A	G	6.030e^-4	0.828	SYNONYMOUS_CODING Klp31E
2L	10415488	2L_10415488_SNP [dm3] 2L_10415488_SNP [dm6]	A	T	6.030e^-4	0.828	SYNONYMOUS_CODING Klp31E
2L	10621148	2L_10621148_SNP [dm3] 2L_10621148_SNP [dm6]	T	C	6.030e^-4	0.828	INTRON Trim9
2L	10795752	2L_10795752_SNP [dm3] 2L_10795752_SNP [dm6]	A	G	6.030e^-4	0.828	INTRON CG31869	TF binding site mE1_TFBS_inv
2L	11322253	2L_11322253_SNP [dm3] 2L_11322253_SNP [dm6]	A	G	6.030e^-4	0.828	INTERGENIC
2L	11439415	2L_11439415_SNP [dm3] 2L_11439415_SNP [dm6]	G	T	6.030e^-4	0.828	SYNONYMOUS_CODING salm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12698086	2L_12698086_SNP [dm3] 2L_12698086_SNP [dm6]	C	T	6.030e^-4	0.828	SYNONYMOUS_CODING PICK1 UPSTREAM CG5781 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12698499	2L_12698499_SNP [dm3] 2L_12698499_SNP [dm6]	C	T	6.030e^-4	0.828	NON_SYNONYMOUS_CODING PICK1 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12698632	2L_12698632_SNP [dm3] 2L_12698632_SNP [dm6]	G	A	6.030e^-4	0.828	SYNONYMOUS_CODING PICK1 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13799447	2L_13799447_SNP [dm3] 2L_13799447_SNP [dm6]	T	C	6.030e^-4	0.828	UTR_3_PRIME Sec71
2L	14084565	2L_14084565_SNP [dm3] 2L_14084565_SNP [dm6]	C	G	6.030e^-4	0.828	INTRON nAChRalpha5
2L	14236436	2L_14236436_INS [dm3] 2L_14236436_INS [dm6]	C	CA	6.030e^-4	0.828	DOWNSTREAM CR44728 INTERGENIC
2L	14236438	2L_14236438_SNP [dm3] 2L_14236438_SNP [dm6]	T	A	6.030e^-4	0.828	DOWNSTREAM CR44728 INTERGENIC
2L	14241266	2L_14241266_INS [dm3] 2L_14241266_INS [dm6]	G	GGACATGAGTG...	6.030e^-4	0.828	EXON CR44216
2L	14434259	2L_14434259_SNP [dm3] 2L_14434259_SNP [dm6]	G	T	6.030e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	15051753	2L_15051753_SNP [dm3] 2L_15051753_SNP [dm6]	A	G	6.030e^-4	0.828	INTRON ck	regulatory region REDfly_CRMs
2L	15051766	2L_15051766_SNP [dm3] 2L_15051766_SNP [dm6]	G	A	6.030e^-4	0.828	INTRON ck	regulatory region REDfly_CRMs
2L	15051780	2L_15051780_SNP [dm3] 2L_15051780_SNP [dm6]	G	C	6.030e^-4	0.828	INTRON ck	regulatory region REDfly_CRMs
2L	15051786	2L_15051786_SNP [dm3] 2L_15051786_SNP [dm6]	T	G	6.030e^-4	0.828	SPLICE_SITE_REGION ck INTRON ck	regulatory region REDfly_CRMs
2L	16865339	2L_16865339_SNP [dm3] 2L_16865339_SNP [dm6]	C	A	6.030e^-4	0.828	INTERGENIC
2L	17661704	2L_17661704_SNP [dm3] 2L_17661704_SNP [dm6]	C	T	6.030e^-4	0.828	SYNONYMOUS_CODING CadN	TF binding site mE1_TFBS_cad
2L	17662127	2L_17662127_SNP [dm3] 2L_17662127_SNP [dm6]	T	G	6.030e^-4	0.828	SYNONYMOUS_CODING CadN
2L	17662250	2L_17662250_SNP [dm3] 2L_17662250_SNP [dm6]	G	C	6.030e^-4	0.828	SYNONYMOUS_CODING CadN
2L	18876306	2L_18876306_SNP [dm3] 2L_18876306_SNP [dm6]	T	C	6.030e^-4	0.828	INTRON tup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18889058	2L_18889058_SNP [dm3] 2L_18889058_SNP [dm6]	A	C	6.030e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	18899935	2L_18899935_SNP [dm3] 2L_18899935_SNP [dm6]	C	T	6.030e^-4	0.828	EXON CR44739
2L	18903765	2L_18903765_SNP [dm3] 2L_18903765_SNP [dm6]	A	T	6.030e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	18911883	2L_18911883_SNP [dm3] 2L_18911883_SNP [dm6]	T	C	6.030e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_cad
2L	20260984	2L_20260984_SNP [dm3] 2L_20260984_SNP [dm6]	G	A	6.030e^-4	0.828	INTERGENIC
2L	20403067	2L_20403067_SNP [dm3] 2L_20403067_SNP [dm6]	T	C	6.030e^-4	0.828	INTRON CG10947
2L	21834409	2L_21834409_SNP [dm3] 2L_21834409_SNP [dm6]	T	C	6.030e^-4	0.828	SYNONYMOUS_CODING tsh	TF binding site mE1_TFBS_cad
2L	2301962	2L_2301962_SNP [dm3] 2L_2301962_SNP [dm6]	T	C	6.030e^-4	0.828	INTERGENIC
2L	2301983	2L_2301983_SNP [dm3] 2L_2301983_SNP [dm6]	C	A	6.030e^-4	0.828	INTERGENIC
2L	2301995	2L_2301995_SNP [dm3] 2L_2301995_SNP [dm6]	T	G	6.030e^-4	0.828	INTERGENIC
2L	2302005	2L_2302005_SNP [dm3] 2L_2302005_SNP [dm6]	C	G	6.030e^-4	0.828	INTERGENIC
2L	2302010	2L_2302010_SNP [dm3] 2L_2302010_SNP [dm6]	G	T	6.030e^-4	0.828	INTERGENIC
2L	2302144	2L_2302144_SNP [dm3] 2L_2302144_SNP [dm6]	G	A	6.030e^-4	0.828	INTERGENIC
2L	2792429	2L_2792429_SNP [dm3] 2L_2792429_SNP [dm6]	G	C	6.030e^-4	0.828	INTRON Syt1
2L	2792461	2L_2792461_SNP [dm3] 2L_2792461_SNP [dm6]	A	T	6.030e^-4	0.828	INTRON Syt1
2L	2792485	2L_2792485_SNP [dm3] 2L_2792485_SNP [dm6]	A	G	6.030e^-4	0.828	SYNONYMOUS_CODING Syt1 UTR_3_PRIME Syt1
2L	3109352	2L_3109352_SNP [dm3] 2L_3109352_SNP [dm6]	T	G	6.030e^-4	0.828	UPSTREAM PpD6 INTRON toc	TF binding site mE1_TFBS_inv
2L	4194518	2L_4194518_SNP [dm3] 2L_4194518_SNP [dm6]	G	A	6.030e^-4	0.828	INTRON CG3714
2L	4194520	2L_4194520_SNP [dm3] 2L_4194520_SNP [dm6]	A	T	6.030e^-4	0.828	INTRON CG3714
2L	4276924	2L_4276924_SNP [dm3] 2L_4276924_SNP [dm6]	C	A	6.030e^-4	0.828	DOWNSTREAM Art2 INTERGENIC
2L	5333877	2L_5333877_SNP [dm3] 2L_5333877_SNP [dm6]	A	T	6.030e^-4	0.828	INTRON fusl
2L	5333914	2L_5333914_SNP [dm3] 2L_5333914_SNP [dm6]	A	G	6.030e^-4	0.828	INTRON fusl
2L	5926276	2L_5926276_SNP [dm3] 2L_5926276_SNP [dm6]	T	A	6.030e^-4	0.828	UPSTREAM CR43926 INTRON dsf
2L	5926297	2L_5926297_SNP [dm3] 2L_5926297_SNP [dm6]	A	T	6.030e^-4	0.828	UPSTREAM CR43926 INTRON dsf
2L	5926343	2L_5926343_DEL [dm3] 2L_5926343_DEL [dm6]	TCAG	T	6.030e^-4	0.828	UPSTREAM CR43926 INTRON dsf
2L	6773772	2L_6773772_SNP [dm3] 2L_6773772_SNP [dm6]	A	C	6.030e^-4	0.828	UPSTREAM CG17378 INTERGENIC
2L	7278345	2L_7278345_SNP [dm3] 2L_7278345_SNP [dm6]	C	A	6.030e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7796528	2L_7796528_SNP [dm3] 2L_7796528_SNP [dm6]	T	C	6.030e^-4	0.828	UTR_3_PRIME Herp UPSTREAM LKR DOWNSTREAM Herp & 1 other
2L	8440525	2L_8440525_SNP [dm3] 2L_8440525_SNP [dm6]	T	C	6.030e^-4	0.828	NON_SYNONYMOUS_CODING mus201
2L	8468693	2L_8468693_INS [dm3] 2L_8468693_INS [dm6]	A	ACATA	6.030e^-4	0.828	INTRON d
2L	9077205	2L_9077205_SNP [dm3] 2L_9077205_SNP [dm6]	A	T	6.030e^-4	0.828	UTR_5_PRIME CG12439 INTRON CG12439
2L	9722455	2L_9722455_SNP [dm3] 2L_9722455_SNP [dm6]	C	G	6.030e^-4	0.828	INTRON Nckx30C	TF binding site mE1_TFBS_sens
2R	1356260	2R_1356260_SNP [dm3] 2R_5468755_SNP [dm6]	G	T	6.030e^-4	0.828	INTRON CG30440
2R	2931128	2R_2931128_SNP [dm3] 2R_7043623_SNP [dm6]	T	C	6.030e^-4	0.828	DOWNSTREAM Tsp42Ej INTRON Tsp42Ek
2R	3524410	2R_3524410_SNP [dm3] 2R_7636905_SNP [dm6]	T	A	6.030e^-4	0.828	UTR_5_PRIME CG43340 UPSTREAM CG43340 INTRON CG43340
2R	5233844	2R_5233844_SNP [dm3] 2R_9346339_SNP [dm6]	A	C	6.030e^-4	0.828	SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
2R	17358668	2R_17358668_SNP [dm3] 2R_21471163_SNP [dm6]	T	C	6.483e^-4	0.828	INTRON Sdc
2R	6671729	2R_6671729_DEL [dm3] 2R_10784224_DEL [dm6]	TT	T	6.483e^-4	0.828	INTRON CG33144 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	16098131	X_16098131_SNP [dm3] X_16204098_SNP [dm6]	A	C	6.483e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	16098139	X_16098139_SNP [dm3] X_16204106_SNP [dm6]	T	A	6.483e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	2180111	X_2180111_SNP [dm3] X_2286078_SNP [dm6]	G	C	6.483e^-4	0.828	INTRON CG2865	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18874990	2L_18874990_SNP [dm3] 2L_18874990_SNP [dm6]	A	G	6.701e^-4	0.828	INTRON tup	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	20245964	2L_20245964_SNP [dm3] 2L_20245964_SNP [dm6]	C	T	6.701e^-4	0.828	INTERGENIC
2L	7742015	2L_7742015_DEL [dm3] 2L_7742015_DEL [dm6]	AA	A	6.701e^-4	0.828	UPSTREAM Acp1 INTERGENIC
3L	2418387	3L_2418387_SNP [dm3] 3L_2418387_SNP [dm6]	T	C	6.701e^-4	0.828	INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19240682	X_19240682_INS [dm3] X_19346649_INS [dm6]	A	AAA	6.701e^-4	0.828	INTRON nAChRalpha7
2R	7677682	2R_7677682_SNP [dm3] 2R_11790177_SNP [dm6]	T	G	6.770e^-4	0.828	UPSTREAM ths & 1 other INTRON ths	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10556631	3L_10556631_SNP [dm3] 3L_10563531_SNP [dm6]	T	C	6.770e^-4	0.828	INTRON A2bp1
3L	2229126	3L_2229126_SNP [dm3] 3L_2229126_SNP [dm6]	A	C	6.770e^-4	0.828	UPSTREAM Oseg2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	6372182	3L_6372182_SNP [dm3] 3L_6379082_SNP [dm6]	T	A	6.770e^-4	0.828	INTERGENIC
3L	8269725	3L_8269725_SNP [dm3] 3L_8276625_SNP [dm6]	T	G	6.770e^-4	0.828	INTRON Dscam4
X	7233918	X_7233918_SNP [dm3] X_7339885_SNP [dm6]	C	G	6.770e^-4	0.828	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	10053453	2L_10053453_SNP [dm3] 2L_10053453_SNP [dm6]	G	T	7.049e^-4	0.828	UPSTREAM CR44875 & 1 other INTERGENIC
2L	1019052	2L_1019052_SNP [dm3] 2L_1019052_SNP [dm6]	T	C	7.049e^-4	0.828	INTRON IA-2
2L	1403785	2L_1403785_INS [dm3] 2L_1403785_INS [dm6]	T	TT	7.049e^-4	0.828	INTRON lea	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16867158	2L_16867158_SNP [dm3] 2L_16867158_SNP [dm6]	A	G	7.049e^-4	0.828	INTERGENIC
2L	17703120	2L_17703120_SNP [dm3] 2L_17703120_SNP [dm6]	A	C	7.049e^-4	0.828	INTRON CadN	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	17703398	2L_17703398_SNP [dm3] 2L_17703398_SNP [dm6]	A	G	7.049e^-4	0.828	INTRON CadN	TF binding site mE1_TFBS_HSA
2L	17703399	2L_17703399_SNP [dm3] 2L_17703399_SNP [dm6]	A	C	7.049e^-4	0.828	INTRON CadN	TF binding site mE1_TFBS_HSA
2L	18884056	2L_18884056_SNP [dm3] 2L_18884056_SNP [dm6]	G	T	7.049e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	18884223	2L_18884223_SNP [dm3] 2L_18884223_SNP [dm6]	T	G	7.049e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	18884229	2L_18884229_SNP [dm3] 2L_18884229_SNP [dm6]	G	A	7.049e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	18888282	2L_18888282_SNP [dm3] 2L_18888282_SNP [dm6]	G	C	7.049e^-4	0.828	INTERGENIC
2L	2394598	2L_2394598_SNP [dm3] 2L_2394598_SNP [dm6]	C	T	7.049e^-4	0.828	INTRON VGlut
2L	2925190	2L_2925190_SNP [dm3] 2L_2925190_SNP [dm6]	G	A	7.049e^-4	0.828	INTRON lilli
2L	3882834	2L_3882834_SNP [dm3] 2L_3882834_SNP [dm6]	A	T	7.049e^-4	0.828	INTRON capu
2L	4367939	2L_4367939_SNP [dm3] 2L_4367939_SNP [dm6]	C	T	7.049e^-4	0.828	INTRON Traf4	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5032444	2L_5032444_SNP [dm3] 2L_5032444_SNP [dm6]	T	G	7.049e^-4	0.828	INTRON Cg25C	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	5032446	2L_5032446_INS [dm3] 2L_5032446_INS [dm6]	A	AA	7.049e^-4	0.828	INTRON Cg25C	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	579566	2L_579566_SNP [dm3] 2L_579566_SNP [dm6]	T	C	7.049e^-4	0.828	DOWNSTREAM Pph13 INTERGENIC
2L	5953654	2L_5953654_SNP [dm3] 2L_5953654_SNP [dm6]	C	T	7.049e^-4	0.828	SYNONYMOUS_CODING CG9044	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	5954294	2L_5954294_SNP [dm3] 2L_5954294_SNP [dm6]	G	A	7.049e^-4	0.828	NON_SYNONYMOUS_CODING CG9044	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6773698	2L_6773698_SNP [dm3] 2L_6773698_SNP [dm6]	G	C	7.049e^-4	0.828	UPSTREAM CG11321 & 1 other INTERGENIC
2L	6773786	2L_6773786_SNP [dm3] 2L_6773786_SNP [dm6]	G	T	7.049e^-4	0.828	UPSTREAM CG17378 INTERGENIC
2L	7214676	2L_7214676_SNP [dm3] 2L_7214676_SNP [dm6]	G	T	7.049e^-4	0.828	INTRON CG13784
2L	885181	2L_885181_SNP [dm3] 2L_885181_SNP [dm6]	A	G	7.049e^-4	0.828	UPSTREAM CG15824 INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	17355646	2R_17355646_DEL [dm3] 2R_21468141_DEL [dm6]	TT	T	7.049e^-4	0.828	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2R	2922952	2R_2922952_SNP [dm3] 2R_7035447_SNP [dm6]	A	G	7.049e^-4	0.828	DOWNSTREAM Tsp42Eh INTRON Tsp42Ei
2R	2922957	2R_2922957_SNP [dm3] 2R_7035452_SNP [dm6]	T	G	7.049e^-4	0.828	DOWNSTREAM Tsp42Eh INTRON Tsp42Ei
2R	2928184	2R_2928184_SNP [dm3] 2R_7040679_SNP [dm6]	T	C	7.049e^-4	0.828	DOWNSTREAM CR12842 INTRON Tsp42Ej	TF binding site mE1_TFBS_Trl
2R	2928263	2R_2928263_SNP [dm3] 2R_7040758_SNP [dm6]	A	T	7.049e^-4	0.828	DOWNSTREAM CR12842 INTRON Tsp42Ej	TF binding site mE1_TFBS_Trl
2R	2929325	2R_2929325_SNP [dm3] 2R_7041820_SNP [dm6]	G	A	7.049e^-4	0.828	SYNONYMOUS_CODING Tsp42Ej UPSTREAM Tsp42Ek	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2929439	2R_2929439_SNP [dm3] 2R_7041934_SNP [dm6]	A	G	7.049e^-4	0.828	SYNONYMOUS_CODING Tsp42Ej UPSTREAM Tsp42Ek	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2930045	2R_2930045_SNP [dm3] 2R_7042540_SNP [dm6]	C	T	7.049e^-4	0.828	UPSTREAM Tsp42Ek INTRON Tsp42Ej
2R	3042797	2R_3042797_SNP [dm3] 2R_7155292_SNP [dm6]	C	T	7.049e^-4	0.828	NON_SYNONYMOUS_CODING Spn43Ad INTRON pk	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	3247891	2R_3247891_SNP [dm3] 2R_7360386_SNP [dm6]	A	G	7.049e^-4	0.828	SYNONYMOUS_CODING Dscam1 INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
2R	3754876	2R_3754876_SNP [dm3] 2R_7867371_SNP [dm6]	G	A	7.049e^-4	0.828	INTRON Dgk
2R	4631832	2R_4631832_SNP [dm3] 2R_8744327_SNP [dm6]	C	T	7.049e^-4	0.828	INTRON CG8740 EXON CR44277
2R	4702858	2R_4702858_DEL [dm3] 2R_8815353_DEL [dm6]	AGAA	A	7.049e^-4	0.828	INTRON sns
2R	7098061	2R_7098061_INS [dm3] 2R_11210556_INS [dm6]	A	AACAGCA	7.049e^-4	0.828		TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5901368	3L_5901368_SNP [dm3] 3L_5908268_SNP [dm6]	T	G	7.049e^-4	0.828	INTRON CG13288
3R	16064229	3R_16064229_SNP [dm3] 3R_20238507_SNP [dm6]	A	T	7.049e^-4	0.828	INTRON Nlg4
3R	19149870	3R_19149870_SNP [dm3] 3R_23324148_SNP [dm6]	T	C	7.049e^-4	0.828	INTRON pnt
X	13837380	X_13837380_SNP [dm3] X_13943347_SNP [dm6]	T	A	7.049e^-4	0.828	INTRON mamo	TF binding site mE1_TFBS_HSA
X	13837381	X_13837381_SNP [dm3] X_13943348_SNP [dm6]	T	G	7.049e^-4	0.828	INTRON mamo	TF binding site mE1_TFBS_HSA
X	22166887	X_22166887_SNP [dm3] X_22765051_SNP [dm6]	T	C	7.049e^-4	0.828	INTRON CR44997 & 1 other
2L	11677556	2L_11677556_DEL [dm3] 2L_11677556_DEL [dm6]	AA	A	7.272e^-4	0.828	INTERGENIC
3L	13836382	3L_13836382_SNP [dm3] 3L_13843282_SNP [dm6]	A	G	7.272e^-4	0.828	UPSTREAM Tsp68C & 1 other INTERGENIC
2L	10536757	2L_10536757_SNP [dm3] 2L_10536757_SNP [dm6]	C	A	7.377e^-4	0.828	DOWNSTREAM CG18302 INTERGENIC
2L	1988997	2L_1988997_SNP [dm3] 2L_1988997_SNP [dm6]	G	A	7.377e^-4	0.828	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC	TF binding site mE1_TFBS_cad
3R	16878221	3R_16878221_SNP [dm3] 3R_21052499_SNP [dm6]	A	T	7.377e^-4	0.828	DOWNSTREAM Mvl INTRON Mvl
3L	23782270	3L_23782270_SNP [dm3] 3L_23789170_SNP [dm6]	C	G	7.471e^-4	0.828	INTERGENIC	transposable element FlyBase
3L	3593809	3L_3593809_SNP [dm3] 3L_3593809_SNP [dm6]	G	A	7.471e^-4	0.828	UPSTREAM snRNA:U7 INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8682797	3R_8682797_SNP [dm3] 3R_12857075_SNP [dm6]	C	G	7.471e^-4	0.828	INTRON CG10126
2L	18887066	2L_18887066_SNP [dm3] 2L_18887066_SNP [dm6]	T	C	8.020e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13088093	2R_13088093_SNP [dm3] 2R_17200588_SNP [dm6]	G	T	8.020e^-4	0.828	INTERGENIC
2R	13088095	2R_13088095_SNP [dm3] 2R_17200590_SNP [dm6]	C	T	8.020e^-4	0.828	INTERGENIC
2R	14020633	2R_14020633_SNP [dm3] 2R_18133128_SNP [dm6]	G	A	8.020e^-4	0.828	INTRON Hsf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	4448225	2R_4448225_INS [dm3] 2R_8560720_INS [dm6]	T	TTT	8.020e^-4	0.828	INTERGENIC
2R	4460187	2R_4460187_SNP [dm3] 2R_8572682_SNP [dm6]	C	G	8.020e^-4	0.828	DOWNSTREAM Cyp6a13 & 1 other INTERGENIC
2R	4511754	2R_4511754_SNP [dm3] 2R_8624249_SNP [dm6]	C	T	8.020e^-4	0.828	UTR_3_PRIME Cirl DOWNSTREAM Cirl
3L	11035939	3L_11035939_SNP [dm3] 3L_11042839_SNP [dm6]	T	G	8.020e^-4	0.828	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
3L	12818411	3L_12818411_SNP [dm3] 3L_12825311_SNP [dm6]	G	C	8.020e^-4	0.828	UTR_3_PRIME CG10960 DOWNSTREAM CG42588
3L	14203586	3L_14203586_SNP [dm3] 3L_14210486_SNP [dm6]	T	C	8.020e^-4	0.828	INTRON nuf
3L	14203596	3L_14203596_SNP [dm3] 3L_14210496_SNP [dm6]	T	C	8.020e^-4	0.828	INTRON nuf
3L	19139636	3L_19139636_SNP [dm3] 3L_19146536_SNP [dm6]	A	T	8.020e^-4	0.828	INTRON fz2	TF binding site mE1_TFBS_cad
3L	2878159	3L_2878159_SNP [dm3] 3L_2878159_SNP [dm6]	A	G	8.020e^-4	0.828	INTRON CG43444	TF binding site BDTNP1_TFBS_dl
3L	3396351	3L_3396351_SNP [dm3] 3L_3396351_SNP [dm6]	G	C	8.020e^-4	0.828	INTERGENIC
3L	6902465	3L_6902465_SNP [dm3] 3L_6909365_SNP [dm6]	A	T	8.020e^-4	0.828	INTERGENIC
3L	6954899	3L_6954899_SNP [dm3] 3L_6961799_SNP [dm6]	C	G	8.020e^-4	0.828	INTRON sgl
3L	7747035	3L_7747035_SNP [dm3] 3L_7753935_SNP [dm6]	T	A	8.020e^-4	0.828	UPSTREAM CG7409 INTRON CG32373
X	12375607	X_12375607_INS [dm3] X_12481574_INS [dm6]	A	AG	8.020e^-4	0.828	INTERGENIC
X	18353288	X_18353288_SNP [dm3] X_18459255_SNP [dm6]	T	C	8.020e^-4	0.828	UTR_3_PRIME CG43843 INTRON CG32547
X	2102440	X_2102440_SNP [dm3] X_2208407_SNP [dm6]	A	G	8.020e^-4	0.828	SYNONYMOUS_CODING msta INTRON msta	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8339929	X_8339929_SNP [dm3] X_8445896_SNP [dm6]	A	C	8.020e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20473608	2R_20473608_SNP [dm3] 2R_24586085_SNP [dm6]	C	T	8.242e^-4	0.828	INTRON pio
3L	14473808	3L_14473808_SNP [dm3] 3L_14480708_SNP [dm6]	G	T	8.242e^-4	0.828	INTRON bbg
3R	13477731	3R_13477731_DEL [dm3] 3R_17652009_DEL [dm6]	TT	T	8.242e^-4	0.828	DOWNSTREAM CR45223 INTRON CG14322
2L	11447746	2L_11447746_SNP [dm3] 2L_11447746_SNP [dm6]	C	A	8.335e^-4	0.828	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15846556	2L_15846556_SNP [dm3] 2L_15846556_SNP [dm6]	G	A	8.335e^-4	0.828	UPSTREAM CR43763 INTERGENIC
2R	16900981	2R_16900981_SNP [dm3] 2R_21013476_SNP [dm6]	C	A	8.335e^-4	0.828	INTRON CG9346
3L	17673115	3L_17673115_SNP [dm3] 3L_17680015_SNP [dm6]	A	G	8.335e^-4	0.828	INTRON CG34251
3L	3453567	3L_3453567_SNP [dm3] 3L_3453567_SNP [dm6]	A	G	8.335e^-4	0.828	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6875338	3L_6875338_SNP [dm3] 3L_6882238_SNP [dm6]	A	G	8.335e^-4	0.828	INTERGENIC
3L	7621669	3L_7621669_SNP [dm3] 3L_7628569_SNP [dm6]	C	T	8.335e^-4	0.828	INTRON CG33275
3L	9620434	3L_9620434_SNP [dm3] 3L_9627334_SNP [dm6]	C	A	8.335e^-4	0.828	UTR_3_PRIME Or67b DOWNSTREAM CG3335
3R	15183399	3R_15183399_SNP [dm3] 3R_19357677_SNP [dm6]	T	A	8.335e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc
3R	17934779	3R_17934779_SNP [dm3] 3R_22109057_SNP [dm6]	A	G	8.335e^-4	0.828	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10551974	2L_10551974_SNP [dm3] 2L_10551974_SNP [dm6]	C	G	8.530e^-4	0.828	INTRON Trim9	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2738390	2L_2738390_SNP [dm3] 2L_2738390_SNP [dm6]	G	A	8.530e^-4	0.828	SPLICE_SITE_REGION CG31689 DOWNSTREAM mir-4914 INTRON CG31689	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12953521	2R_12953521_SNP [dm3] 2R_17066016_SNP [dm6]	A	G	8.530e^-4	0.828	UTR_3_PRIME CG6967 & 1 other DOWNSTREAM CG30460
2R	12953527	2R_12953527_SNP [dm3] 2R_17066022_SNP [dm6]	A	T	8.530e^-4	0.828	UTR_3_PRIME CG6967 & 1 other DOWNSTREAM CG30460
3L	6875397	3L_6875397_SNP [dm3] 3L_6882297_SNP [dm6]	T	C	8.530e^-4	0.828	INTERGENIC
3R	3342745	3R_3342745_SNP [dm3] 3R_7517023_SNP [dm6]	T	G	8.530e^-4	0.828	INTERGENIC
X	12355297	X_12355297_SNP [dm3] X_12461264_SNP [dm6]	C	A	8.530e^-4	0.828	INTRON Rab40
X	20406976	X_20406976_SNP [dm3] X_20535949_SNP [dm6]	T	C	8.530e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	2112235	X_2112235_SNP [dm3] X_2218202_SNP [dm6]	A	T	8.530e^-4	0.828	INTRON Vinc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	12953538	2R_12953538_SNP [dm3] 2R_17066033_SNP [dm6]	T	C	8.674e^-4	0.828	UTR_3_PRIME CG6967 & 1 other DOWNSTREAM CG30460
3L	1213455	3L_1213455_SNP [dm3] 3L_1213455_SNP [dm6]	T	A	8.674e^-4	0.828	DOWNSTREAM LysE INTRON mwh
3L	1213462	3L_1213462_SNP [dm3] 3L_1213462_SNP [dm6]	T	G	8.674e^-4	0.828	DOWNSTREAM LysE INTRON mwh
3L	5013430	3L_5013430_SNP [dm3] 3L_5013430_SNP [dm6]	G	A	8.674e^-4	0.828	INTRON Con
3R	15183283	3R_15183283_DEL [dm3] 3R_19357561_DEL [dm6]	AAA	A	8.674e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc
2L	20419213	2L_20419213_SNP [dm3] 2L_20419213_SNP [dm6]	T	C	8.735e^-4	0.828	UPSTREAM snoRNA:Psi18S-640c & 4 others DOWNSTREAM snoRNA:Psi18S-525a & 4 others INTRON Arpc2 EXON snoRNA:Psi18S-525d
3L	10547277	3L_10547277_SNP [dm3] 3L_10554177_SNP [dm6]	A	T	8.735e^-4	0.828	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	10547288	3L_10547288_SNP [dm3] 3L_10554188_SNP [dm6]	A	T	8.735e^-4	0.828	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	10547290	3L_10547290_SNP [dm3] 3L_10554190_SNP [dm6]	T	G	8.735e^-4	0.828	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	10547291	3L_10547291_SNP [dm3] 3L_10554191_SNP [dm6]	A	C	8.735e^-4	0.828	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	11436837	3L_11436837_SNP [dm3] 3L_11443737_SNP [dm6]	A	C	8.735e^-4	0.828	DOWNSTREAM CR44549 INTERGENIC
3L	14221490	3L_14221490_SNP [dm3] 3L_14228390_SNP [dm6]	T	C	8.735e^-4	0.828	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_sna
3L	24073528	3L_24073528_SNP [dm3] 3L_24080428_SNP [dm6]	G	T	8.735e^-4	0.828	INTRON Snap25
3L	9501991	3L_9501991_SNP [dm3] 3L_9508891_SNP [dm6]	C	G	8.735e^-4	0.828	DOWNSTREAM RpS9 INTRON CG3408	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12627240	X_12627240_SNP [dm3] X_12733207_SNP [dm6]	A	T	8.735e^-4	0.828	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_kn
X	2233226	X_2233226_DEL [dm3] X_2339193_DEL [dm6]	GCGCGATTAGGAG...	G	8.735e^-4	0.828	INTRON phl
2R	19112078	2R_19112078_SNP [dm3] 2R_23224555_SNP [dm6]	A	C	8.992e^-4	0.828	INTERGENIC
2R	6282255	2R_6282255_SNP [dm3] 2R_10394750_SNP [dm6]	T	C	8.992e^-4	0.828	INTRON CG42732	TF binding site BDTNP1_TFBS_twi
3L	10268859	3L_10268859_SNP [dm3] 3L_10275759_SNP [dm6]	C	A	8.992e^-4	0.828	INTERGENIC
3L	10268866	3L_10268866_SNP [dm3] 3L_10275766_SNP [dm6]	T	G	8.992e^-4	0.828	INTERGENIC
3L	14426571	3L_14426571_SNP [dm3] 3L_14433471_SNP [dm6]	T	G	8.992e^-4	0.828	INTRON bbg
X	12962652	X_12962652_SNP [dm3] X_13068619_SNP [dm6]	A	T	8.992e^-4	0.828	INTRON rad
X	16789507	X_16789507_DEL [dm3] X_16895474_DEL [dm6]	TT	T	8.992e^-4	0.828	DOWNSTREAM CG33252 INTERGENIC
X	16789512	X_16789512_SNP [dm3] X_16895479_SNP [dm6]	A	C	8.992e^-4	0.828	DOWNSTREAM CG33252 INTERGENIC
X	17505786	X_17505786_SNP [dm3] X_17611753_SNP [dm6]	T	C	8.992e^-4	0.828	INTERGENIC
X	17923304	X_17923304_SNP [dm3] X_18029271_SNP [dm6]	C	T	8.992e^-4	0.828	INTRON Sh
X	2101789	X_2101789_SNP [dm3] X_2207756_SNP [dm6]	C	T	8.992e^-4	0.828	SYNONYMOUS_CODING msta INTRON msta	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16011977	2L_16011977_DEL [dm3] 2L_16011977_DEL [dm6]	TTAC	T	9.011e^-4	0.828	INTRON beat-Ic
2R	10000920	2R_10000920_SNP [dm3] 2R_14113415_SNP [dm6]	A	G	9.011e^-4	0.828	INTRON Prosap	TF binding site mE1_TFBS_bab1
2R	1028527	2R_1028527_SNP [dm3] 2R_5141022_SNP [dm6]	T	C	9.011e^-4	0.828	INTERGENIC
3L	1213497	3L_1213497_SNP [dm3] 3L_1213497_SNP [dm6]	A	T	9.011e^-4	0.828	DOWNSTREAM LysE INTRON mwh
3L	1213512	3L_1213512_SNP [dm3] 3L_1213512_SNP [dm6]	G	T	9.011e^-4	0.828	DOWNSTREAM LysE INTRON mwh
3L	1213515	3L_1213515_SNP [dm3] 3L_1213515_SNP [dm6]	C	T	9.011e^-4	0.828	DOWNSTREAM LysE INTRON mwh
3L	15626419	3L_15626419_SNP [dm3] 3L_15633319_SNP [dm6]	T	A	9.011e^-4	0.828	UPSTREAM comm3 INTRON comm3
3L	7047119	3L_7047119_SNP [dm3] 3L_7054019_SNP [dm6]	C	G	9.011e^-4	0.828	DOWNSTREAM Mp INTERGENIC
3R	10221367	3R_10221367_SNP [dm3] 3R_14395645_SNP [dm6]	A	G	9.011e^-4	0.828	SYNONYMOUS_CODING cv-c DOWNSTREAM mir-2281	TF binding site mE1_TFBS_cad
3R	11982358	3R_11982358_SNP [dm3] 3R_16156636_SNP [dm6]	A	G	9.011e^-4	0.828	INTRON CG6006
3R	14629014	3R_14629014_SNP [dm3] 3R_18803292_SNP [dm6]	T	A	9.011e^-4	0.828	UTR_3_PRIME CG18208
3R	22255633	3R_22255633_SNP [dm3] 3R_26429911_SNP [dm6]	T	A	9.011e^-4	0.828	DOWNSTREAM CR43434 INTERGENIC
3R	8945304	3R_8945304_SNP [dm3] 3R_13119582_SNP [dm6]	A	G	9.011e^-4	0.828	INTRON timeout
3R	9536899	3R_9536899_SNP [dm3] 3R_13711177_SNP [dm6]	G	A	9.011e^-4	0.828	UPSTREAM primo-1 INTRON primo-2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9548986	3R_9548986_INS [dm3] 3R_13723264_INS [dm6]	C	CC	9.011e^-4	0.828	INTRON CG34383
3L	15509126	3L_15509126_SNP [dm3] 3L_15516026_SNP [dm6]	G	A	9.072e^-4	0.828	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	4597673	2L_4597673_SNP [dm3] 2L_4597673_SNP [dm6]	T	C	9.436e^-4	0.828	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8165868	2L_8165868_SNP [dm3] 2L_8165868_SNP [dm6]	A	G	9.436e^-4	0.828	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	17723947	2R_17723947_SNP [dm3] 2R_21836442_SNP [dm6]	A	T	9.436e^-4	0.828	UPSTREAM CG4377 INTERGENIC
3L	14221461	3L_14221461_SNP [dm3] 3L_14228361_SNP [dm6]	C	A	9.733e^-4	0.828	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_sna
3L	14221462	3L_14221462_SNP [dm3] 3L_14228362_SNP [dm6]	A	T	9.733e^-4	0.828	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_sna
3R	13009301	3R_13009301_SNP [dm3] 3R_17183579_SNP [dm6]	G	A	9.733e^-4	0.828	INTRON Mur89F
X	20773358	X_20773358_SNP [dm3] X_20902331_SNP [dm6]	T	C	9.733e^-4	0.828	INTRON shakB
2L	10536647	2L_10536647_SNP [dm3] 2L_10536647_SNP [dm6]	G	A	9.747e^-4	0.828	DOWNSTREAM CG18302 INTERGENIC
3L	10861700	3L_10861700_SNP [dm3] 3L_10868600_SNP [dm6]	A	C	9.747e^-4	0.828	INTRON tna
2L	16138056	2L_16138056_SNP [dm3] 2L_16138056_SNP [dm6]	T	A	9.988e^-4	0.828	INTERGENIC
2R	19224650	2R_19224650_INS [dm3] 2R_23337127_INS [dm6]	A	ATAA	9.988e^-4	0.828	INTERGENIC
2R	2909482	2R_2909482_SNP [dm3] 2R_7021977_SNP [dm6]	A	T	9.988e^-4	0.828	INTERGENIC
3L	14473824	3L_14473824_SNP [dm3] 3L_14480724_SNP [dm6]	T	A	9.988e^-4	0.828	INTRON bbg
3L	14473826	3L_14473826_SNP [dm3] 3L_14480726_SNP [dm6]	G	A	9.988e^-4	0.828	INTRON bbg
3L	14473829	3L_14473829_SNP [dm3] 3L_14480729_SNP [dm6]	T	A	9.988e^-4	0.828	INTRON bbg
X	12436971	X_12436971_INS [dm3] X_12542938_INS [dm6]	C	CCGGAGTC	9.988e^-4	0.828	INTRON CG43921
X	14842374	X_14842374_INS [dm3] X_14948341_INS [dm6]	A	ACATAGTCCATAAGGTA...	9.988e^-4	0.828	INTRON pdgy	TF binding site mE1_TFBS_HSA
X	16225094	X_16225094_INS [dm3] X_16331061_INS [dm6]	A	ATTATTT	9.988e^-4	0.828	UPSTREAM CG9919 DOWNSTREAM CG9921 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16225097	X_16225097_SNP [dm3] X_16331064_SNP [dm6]	C	A	9.988e^-4	0.828	UPSTREAM CG9919 DOWNSTREAM CG9921 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

RPL32C phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results