DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.485e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.0747644

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1201 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	3179264	3L_3179264_SNP [dm3] 3L_3179264_SNP [dm6]	A	G	1.009e^-5	0.959	UTR_5_PRIME Girdin UPSTREAM CG14964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4812700	2L_4812700_SNP [dm3] 2L_4812700_SNP [dm6]	A	C	1.024e^-5	0.959	UPSTREAM CR45297 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h
X	14324269	X_14324269_SNP [dm3] X_14430236_SNP [dm6]	T	A	1.090e^-5	0.959	INTRON dpr8
3L	3178812	3L_3178812_INS [dm3] 3L_3178812_INS [dm6]	G	AAAAAA	1.234e^-5	0.959	UPSTREAM Girdin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3178846	3L_3178846_SNP [dm3] 3L_3178846_SNP [dm6]	T	A	1.234e^-5	0.959	UPSTREAM Girdin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	10088262	2R_10088262_SNP [dm3] 2R_14200757_SNP [dm6]	G	A	1.911e^-5	0.959	UTR_5_PRIME VGAT DOWNSTREAM Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3179317	3L_3179317_SNP [dm3] 3L_3179317_SNP [dm6]	C	T	2.266e^-5	0.959	UTR_5_PRIME Girdin UPSTREAM CG14964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5252796	X_5252796_SNP [dm3] X_5358763_SNP [dm6]	A	T	2.663e^-5	0.959	INTRON SK
X	5252912	X_5252912_SNP [dm3] X_5358879_SNP [dm6]	C	T	2.972e^-5	0.959	INTRON SK
X	5252914	X_5252914_SNP [dm3] X_5358881_SNP [dm6]	G	A	2.972e^-5	0.959	INTRON SK
X	7951688	X_7951688_SNP [dm3] X_8057655_SNP [dm6]	C	T	3.036e^-5	0.959	UPSTREAM fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	1870616	3L_1870616_SNP [dm3] 3L_1870616_SNP [dm6]	G	C	3.302e^-5	0.959	SYNONYMOUS_CODING CG13924 DOWNSTREAM dre4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17727386	X_17727386_SNP [dm3] X_17833353_SNP [dm6]	C	A	3.423e^-5	0.959	INTRON CG6398	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_sens
2L	8484977	2L_8484977_SNP [dm3] 2L_8484977_SNP [dm6]	C	G	3.576e^-5	0.959	SYNONYMOUS_CODING d UPSTREAM unsRNA:d-a	TF binding site mE1_TFBS_chinmo
2L	8485232	2L_8485232_SNP [dm3] 2L_8485232_SNP [dm6]	T	G	3.576e^-5	0.959	SYNONYMOUS_CODING d UPSTREAM unsRNA:d-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8485304	2L_8485304_SNP [dm3] 2L_8485304_SNP [dm6]	G	T	3.576e^-5	0.959	SYNONYMOUS_CODING d UPSTREAM unsRNA:d-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8485412	2L_8485412_SNP [dm3] 2L_8485412_SNP [dm6]	A	C	3.576e^-5	0.959	SYNONYMOUS_CODING d UPSTREAM unsRNA:d-a	TF binding site mE1_TFBS_chinmo
2L	8485526	2L_8485526_SNP [dm3] 2L_8485526_SNP [dm6]	C	T	3.576e^-5	0.959	UPSTREAM unsRNA:d-a INTRON d
2L	8485535	2L_8485535_SNP [dm3] 2L_8485535_SNP [dm6]	A	T	3.576e^-5	0.959	UPSTREAM unsRNA:d-a INTRON d
2L	8485546	2L_8485546_SNP [dm3] 2L_8485546_SNP [dm6]	G	T	3.576e^-5	0.959	UPSTREAM unsRNA:d-a INTRON d
2L	8485549	2L_8485549_SNP [dm3] 2L_8485549_SNP [dm6]	G	A	3.576e^-5	0.959	UPSTREAM unsRNA:d-a INTRON d
2L	8485561	2L_8485561_SNP [dm3] 2L_8485561_SNP [dm6]	C	A	3.576e^-5	0.959	UPSTREAM unsRNA:d-a INTRON d
2L	8485573	2L_8485573_SNP [dm3] 2L_8485573_SNP [dm6]	T	A	3.576e^-5	0.959	UPSTREAM unsRNA:d-a INTRON d
2L	8485592	2L_8485592_SNP [dm3] 2L_8485592_SNP [dm6]	T	C	3.576e^-5	0.959	UPSTREAM unsRNA:d-a INTRON d
2L	8485610	2L_8485610_SNP [dm3] 2L_8485610_SNP [dm6]	A	T	3.576e^-5	0.959	UPSTREAM unsRNA:d-a INTRON d
2L	8485629	2L_8485629_SNP [dm3] 2L_8485629_SNP [dm6]	C	T	3.576e^-5	0.959	UPSTREAM unsRNA:d-a INTRON d
2L	8485644	2L_8485644_SNP [dm3] 2L_8485644_SNP [dm6]	A	T	3.576e^-5	0.959	UPSTREAM unsRNA:d-a INTRON d
2L	8485649	2L_8485649_SNP [dm3] 2L_8485649_SNP [dm6]	C	A	3.576e^-5	0.959	UPSTREAM unsRNA:d-a INTRON d
2L	8485724	2L_8485724_SNP [dm3] 2L_8485724_SNP [dm6]	T	C	3.576e^-5	0.959	UPSTREAM unsRNA:d-a INTRON d
2L	8485991	2L_8485991_SNP [dm3] 2L_8485991_SNP [dm6]	T	A	3.576e^-5	0.959	DOWNSTREAM unsRNA:d-a INTRON d	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8486002	2L_8486002_DEL [dm3] 2L_8486002_DEL [dm6]	TC	T	3.576e^-5	0.959	DOWNSTREAM unsRNA:d-a INTRON d	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8486009	2L_8486009_SNP [dm3] 2L_8486009_SNP [dm6]	T	A	3.576e^-5	0.959	DOWNSTREAM unsRNA:d-a INTRON d	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8486126	2L_8486126_SNP [dm3] 2L_8486126_SNP [dm6]	C	T	3.576e^-5	0.959	SYNONYMOUS_CODING d DOWNSTREAM unsRNA:d-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8486177	2L_8486177_SNP [dm3] 2L_8486177_SNP [dm6]	T	C	3.576e^-5	0.959	SYNONYMOUS_CODING d DOWNSTREAM unsRNA:d-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3178662	3L_3178662_SNP [dm3] 3L_3178662_SNP [dm6]	C	A	3.754e^-5	0.959	UPSTREAM Girdin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18594882	3L_18594882_SNP [dm3] 3L_18601782_SNP [dm6]	T	G	4.002e^-5	0.959	NON_SYNONYMOUS_CODING CG4174 UTR_3_PRIME CG13380
2L	19112145	2L_19112145_SNP [dm3] 2L_19112145_SNP [dm6]	G	A	4.101e^-5	0.959	NON_SYNONYMOUS_CODING amd INTRON amd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9336699	3R_9336699_SNP [dm3] 3R_13510977_SNP [dm6]	G	C	4.637e^-5	0.959	INTERGENIC
3R	9336701	3R_9336701_SNP [dm3] 3R_13510979_SNP [dm6]	A	G	4.637e^-5	0.959	INTERGENIC
X	15888696	X_15888696_SNP [dm3] X_15994663_SNP [dm6]	A	G	4.901e^-5	0.959	INTRON exd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
4	222361	4_222361_SNP [dm3] 4_201735_SNP [dm6]	A	T	5.111e^-5	0.959	INTRON CG31998
3L	4111883	3L_4111883_SNP [dm3] 3L_4111883_SNP [dm6]	C	T	5.353e^-5	0.959	SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6249661	X_6249661_SNP [dm3] X_6355628_SNP [dm6]	C	T	5.378e^-5	0.959	INTRON kdn
2L	4223212	2L_4223212_SNP [dm3] 2L_4223212_SNP [dm6]	A	C	5.408e^-5	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4239899	2L_4239899_SNP [dm3] 2L_4239899_SNP [dm6]	C	T	5.422e^-5	0.959	DOWNSTREAM CR45720 INTERGENIC
3R	17882203	3R_17882203_INS [dm3] 3R_22056481_INS [dm6]	T	TAT	5.981e^-5	0.959	INTRON how
2R	3174379	2R_3174379_SNP [dm3] 2R_7286874_SNP [dm6]	C	A	5.997e^-5	0.959	INTRON pwn
3R	18684565	3R_18684565_SNP [dm3] 3R_22858843_SNP [dm6]	T	G	6.441e^-5	0.959	INTERGENIC
3R	18988897	3R_18988897_SNP [dm3] 3R_23163175_SNP [dm6]	T	A	6.568e^-5	0.959	INTERGENIC
2R	9961920	2R_9961920_SNP [dm3] 2R_14074415_SNP [dm6]	C	T	6.593e^-5	0.959	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	16450248	2L_16450248_SNP [dm3] 2L_16450248_SNP [dm6]	A	G	6.996e^-5	0.959	SYNONYMOUS_CODING Idgf2 UPSTREAM Idgf3
2R	14318431	2R_14318431_INS [dm3] 2R_18430926_INS [dm6]	A	AATTTGAGAA	7.354e^-5	0.959	UTR_3_PRIME CG30118 DOWNSTREAM CG12263 INTRON CG30118
2R	17856409	2R_17856409_SNP [dm3] 2R_21968904_SNP [dm6]	G	A	7.767e^-5	0.959	INTRON ppk9
X	5252892	X_5252892_SNP [dm3] X_5358859_SNP [dm6]	G	T	7.858e^-5	0.959	INTRON SK
2R	9199357	2R_9199357_SNP [dm3] 2R_13311852_SNP [dm6]	C	A	7.992e^-5	0.959	INTERGENIC
2L	4226977	2L_4226977_SNP [dm3] 2L_4226977_SNP [dm6]	A	C	8.195e^-5	0.959	UTR_5_PRIME CG3702 UPSTREAM RpL40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2L	4239948	2L_4239948_SNP [dm3] 2L_4239948_SNP [dm6]	A	G	8.302e^-5	0.959	DOWNSTREAM CR45720 INTERGENIC
X	7951007	X_7951007_SNP [dm3] X_8056974_SNP [dm6]	T	A	8.351e^-5	0.959	UPSTREAM fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	8486078	2L_8486078_SNP [dm3] 2L_8486078_SNP [dm6]	T	C	8.382e^-5	0.959	SYNONYMOUS_CODING d DOWNSTREAM unsRNA:d-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8486228	2L_8486228_SNP [dm3] 2L_8486228_SNP [dm6]	T	C	8.382e^-5	0.959	SYNONYMOUS_CODING d DOWNSTREAM unsRNA:d-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4222956	2L_4222956_SNP [dm3] 2L_4222956_SNP [dm6]	C	T	8.531e^-5	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	16229998	2R_16229998_SNP [dm3] 2R_20342493_SNP [dm6]	T	A	8.706e^-5	0.959	INTRON CG16739
2R	16230018	2R_16230018_SNP [dm3] 2R_20342513_SNP [dm6]	G	T	8.706e^-5	0.959	SPLICE_SITE_REGION CG16739 SYNONYMOUS_CODING CG16739
X	19414662	X_19414662_SNP [dm3] X_19520629_SNP [dm6]	C	A	8.706e^-5	0.959	INTRON l_1_G0156	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22583111	3R_22583111_SNP [dm3] 3R_26757389_SNP [dm6]	G	T	8.708e^-5	0.959	EXON CR45562
2L	8485611	2L_8485611_SNP [dm3] 2L_8485611_SNP [dm6]	A	T	8.813e^-5	0.959	UPSTREAM unsRNA:d-a INTRON d
3L	11304738	3L_11304738_SNP [dm3] 3L_11311638_SNP [dm6]	A	G	8.894e^-5	0.959	UPSTREAM CG7573 INTERGENIC
2R	16701450	2R_16701450_SNP [dm3] 2R_20813945_SNP [dm6]	G	C	8.944e^-5	0.959	INTERGENIC
2R	16701877	2R_16701877_SNP [dm3] 2R_20814372_SNP [dm6]	G	A	8.944e^-5	0.959	INTERGENIC
2L	18983860	2L_18983860_INS [dm3] 2L_18983860_INS [dm6]	T	TTGACTT	9.167e^-5	0.959	INTRON Swip-1
X	19414527	X_19414527_SNP [dm3] X_19520494_SNP [dm6]	C	A	9.266e^-5	0.959	INTRON l_1_G0156	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19389831	2R_19389831_SNP [dm3] 2R_23502308_SNP [dm6]	T	C	9.275e^-5	0.959	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_inv
3R	24115383	3R_24115383_SNP [dm3] 3R_28289661_SNP [dm6]	C	T	9.377e^-5	0.959	INTERGENIC
3R	24115387	3R_24115387_DEL [dm3] 3R_28289665_DEL [dm6]	TT	T	9.377e^-5	0.959	INTERGENIC
3R	24115395	3R_24115395_SNP [dm3] 3R_28289673_SNP [dm6]	A	T	9.377e^-5	0.959	INTERGENIC
2R	14427637	2R_14427637_SNP [dm3] 2R_18540132_SNP [dm6]	G	C	9.961e^-5	0.959	UTR_5_PRIME Rgk2 DOWNSTREAM Pepck & 1 other	TF binding site mE1_TFBS_chinmo
3L	9726588	3L_9726588_SNP [dm3] 3L_9733488_SNP [dm6]	G	A	1.004e^-4	0.959	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
X	2831946	X_2831946_SNP [dm3] X_2937913_SNP [dm6]	G	A	1.053e^-4	0.959	SYNONYMOUS_CODING CG3598 UPSTREAM CG14420 INTRON kirre
X	5253158	X_5253158_SNP [dm3] X_5359125_SNP [dm6]	T	C	1.070e^-4	0.959	INTRON SK
X	5253159	X_5253159_SNP [dm3] X_5359126_SNP [dm6]	G	A	1.070e^-4	0.959	INTRON SK
2L	20750617	2L_20750617_SNP [dm3] 2L_20750617_SNP [dm6]	G	A	1.070e^-4	0.959	UTR_3_PRIME Fs_2_Ket DOWNSTREAM CG9319	TF binding site mE1_TFBS_sens
2L	1111598	2L_1111598_SNP [dm3] 2L_1111598_SNP [dm6]	C	T	1.074e^-4	0.959	SYNONYMOUS_CODING CG14339
X	17728100	X_17728100_SNP [dm3] X_17834067_SNP [dm6]	C	T	1.086e^-4	0.959	INTRON CG6398	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	4099086	X_4099086_SNP [dm3] X_4205053_SNP [dm6]	C	T	1.086e^-4	0.959	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
X	8607067	X_8607067_SNP [dm3] X_8713034_SNP [dm6]	C	T	1.119e^-4	0.959	NON_SYNONYMOUS_CODING CG2004 DOWNSTREAM Hexo2
X	8607069	X_8607069_SNP [dm3] X_8713036_SNP [dm6]	T	C	1.119e^-4	0.959	SYNONYMOUS_CODING CG2004 DOWNSTREAM Hexo2
X	1146474	X_1146474_SNP [dm3] X_1252441_SNP [dm6]	A	C	1.126e^-4	0.959	INTRON Atf3
2L	3301249	2L_3301249_SNP [dm3] 2L_3301249_SNP [dm6]	T	G	1.143e^-4	0.959	NON_SYNONYMOUS_CODING CG9663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18597854	3L_18597854_SNP [dm3] 3L_18604754_SNP [dm6]	G	A	1.146e^-4	0.959	SYNONYMOUS_CODING CG18234 UPSTREAM CG18233 INTRON CG4174 & 1 other
3L	9719888	3L_9719888_SNP [dm3] 3L_9726788_SNP [dm6]	A	T	1.146e^-4	0.959	UPSTREAM Naa60 DOWNSTREAM defl INTERGENIC	TF binding site mE1_TFBS_HSA
3L	17929828	3L_17929828_SNP [dm3] 3L_17936728_SNP [dm6]	C	A	1.162e^-4	0.959	INTRON CG43174
2R	14087695	2R_14087695_SNP [dm3] 2R_18200190_SNP [dm6]	A	C	1.163e^-4	0.959	INTERGENIC
X	21231603	X_21231603_SNP [dm3] X_21360576_SNP [dm6]	C	T	1.163e^-4	0.959	INTRON Sep1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	15887848	X_15887848_SNP [dm3] X_15993815_SNP [dm6]	C	A	1.170e^-4	0.959	INTRON exd
X	15887867	X_15887867_SNP [dm3] X_15993834_SNP [dm6]	T	A	1.170e^-4	0.959	INTRON exd
X	15887905	X_15887905_SNP [dm3] X_15993872_SNP [dm6]	A	G	1.170e^-4	0.959	INTRON exd
X	15887907	X_15887907_SNP [dm3] X_15993874_SNP [dm6]	T	C	1.170e^-4	0.959	INTRON exd
X	15887911	X_15887911_SNP [dm3] X_15993878_SNP [dm6]	T	G	1.170e^-4	0.959	INTRON exd
X	15888744	X_15888744_SNP [dm3] X_15994711_SNP [dm6]	C	T	1.170e^-4	0.959	SYNONYMOUS_CODING exd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10253187	2L_10253187_SNP [dm3] 2L_10253187_SNP [dm6]	A	G	1.194e^-4	0.959	SYNONYMOUS_CODING Ror
3L	15051940	3L_15051940_SNP [dm3] 3L_15058840_SNP [dm6]	T	G	1.218e^-4	0.959	INTRON Sytbeta
2L	1988959	2L_1988959_SNP [dm3] 2L_1988959_SNP [dm6]	G	A	1.235e^-4	0.959	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC	TF binding site mE1_TFBS_cad
2L	1988963	2L_1988963_SNP [dm3] 2L_1988963_SNP [dm6]	G	A	1.235e^-4	0.959	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC	TF binding site mE1_TFBS_cad
2L	1989003	2L_1989003_SNP [dm3] 2L_1989003_SNP [dm6]	A	C	1.235e^-4	0.959	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC	TF binding site mE1_TFBS_cad
2L	1989010	2L_1989010_SNP [dm3] 2L_1989010_SNP [dm6]	A	G	1.235e^-4	0.959	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC	TF binding site mE1_TFBS_cad
3R	17394087	3R_17394087_SNP [dm3] 3R_21568365_SNP [dm6]	C	T	1.247e^-4	0.959	SYNONYMOUS_CODING CG15498
2L	6154041	2L_6154041_SNP [dm3] 2L_6154041_SNP [dm6]	A	T	1.262e^-4	0.959	DOWNSTREAM Muc26B INTRON CG31639	TF binding site mE1_TFBS_HSA
2L	6154281	2L_6154281_SNP [dm3] 2L_6154281_SNP [dm6]	G	A	1.262e^-4	0.959	DOWNSTREAM Muc26B INTRON CG31639	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5252908	X_5252908_SNP [dm3] X_5358875_SNP [dm6]	T	C	1.265e^-4	0.959	INTRON SK
3L	11120643	3L_11120643_SNP [dm3] 3L_11127543_SNP [dm6]	T	G	1.304e^-4	0.959	INTRON CG42575
2R	16062091	2R_16062091_SNP [dm3] 2R_20174586_SNP [dm6]	A	G	1.326e^-4	0.959	INTERGENIC
2R	16062112	2R_16062112_SNP [dm3] 2R_20174607_SNP [dm6]	C	T	1.326e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19347889	2R_19347889_SNP [dm3] 2R_23460366_SNP [dm6]	A	G	1.335e^-4	0.959	INTRON CG43795
3L	15128439	3L_15128439_DEL [dm3] 3L_15135339_DEL [dm6]	ATT	C	1.335e^-4	0.959	UPSTREAM scaRNA:MeU5-U42 INTRON CG12316
3L	15127704	3L_15127704_SNP [dm3] 3L_15134604_SNP [dm6]	T	C	1.363e^-4	0.959	INTRON CG12316 EXON scaRNA:MeU5-U42
3L	15128059	3L_15128059_SNP [dm3] 3L_15134959_SNP [dm6]	T	G	1.363e^-4	0.959	SYNONYMOUS_CODING CG12316 UPSTREAM scaRNA:MeU5-U42
3R	9335105	3R_9335105_SNP [dm3] 3R_13509383_SNP [dm6]	C	A	1.377e^-4	0.959	INTERGENIC
2L	3260094	2L_3260094_SNP [dm3] 2L_3260094_SNP [dm6]	A	G	1.420e^-4	0.959	DOWNSTREAM CR45337 INTERGENIC
3L	6058604	3L_6058604_SNP [dm3] 3L_6065504_SNP [dm6]	T	G	1.427e^-4	0.959	UPSTREAM CG42269 INTERGENIC
2L	8486250	2L_8486250_SNP [dm3] 2L_8486250_SNP [dm6]	C	T	1.441e^-4	0.959	SYNONYMOUS_CODING d DOWNSTREAM unsRNA:d-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1870253	3L_1870253_SNP [dm3] 3L_1870253_SNP [dm6]	G	C	1.503e^-4	0.959	SYNONYMOUS_CODING CG13924 DOWNSTREAM CG12025	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1870358	3L_1870358_SNP [dm3] 3L_1870358_SNP [dm6]	G	A	1.503e^-4	0.959	SYNONYMOUS_CODING CG13924 DOWNSTREAM CG12025	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9014870	3R_9014870_SNP [dm3] 3R_13189148_SNP [dm6]	A	G	1.503e^-4	0.959	SYNONYMOUS_CODING CG14380
3L	7573223	3L_7573223_SNP [dm3] 3L_7580123_SNP [dm6]	T	C	1.510e^-4	0.959	INTERGENIC
3L	7573249	3L_7573249_SNP [dm3] 3L_7580149_SNP [dm6]	T	G	1.510e^-4	0.959	INTERGENIC
3L	7573356	3L_7573356_DEL [dm3] 3L_7580256_DEL [dm6]	TAAGT	T	1.510e^-4	0.959	INTERGENIC
3L	7573361	3L_7573361_INS [dm3] 3L_7580261_INS [dm6]	G	GAAAGGCA	1.510e^-4	0.959	INTERGENIC
3L	7573363	3L_7573363_SNP [dm3] 3L_7580263_SNP [dm6]	C	T	1.510e^-4	0.959	INTERGENIC
X	4877667	X_4877667_SNP [dm3] X_4983634_SNP [dm6]	G	A	1.519e^-4	0.959	INTRON CR44833	regulatory region REDfly_CRMs
X	4877751	X_4877751_SNP [dm3] X_4983718_SNP [dm6]	A	G	1.519e^-4	0.959	INTRON CR44833	regulatory region REDfly_CRMs
2L	4439250	2L_4439250_SNP [dm3] 2L_4439250_SNP [dm6]	T	G	1.542e^-4	0.959	UTR_5_PRIME CG15431
3L	3173799	3L_3173799_SNP [dm3] 3L_3173799_SNP [dm6]	G	T	1.545e^-4	0.959	NON_SYNONYMOUS_CODING CG14964	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17756568	3R_17756568_SNP [dm3] 3R_21930846_SNP [dm6]	G	A	1.559e^-4	0.959	INTERGENIC
3R	593767	3R_593767_SNP [dm3] 3R_4768045_SNP [dm6]	A	G	1.593e^-4	0.959	SYNONYMOUS_CODING CG44098 INTRON atms & 1 other
3L	18599883	3L_18599883_SNP [dm3] 3L_18606783_SNP [dm6]	G	C	1.601e^-4	0.959	NON_SYNONYMOUS_CODING CG18233 UPSTREAM CG18231 INTRON CG4174 & 1 other
2L	8191697	2L_8191697_SNP [dm3] 2L_8191697_SNP [dm6]	A	G	1.642e^-4	0.959	SYNONYMOUS_CODING CG8475 UTR_3_PRIME CG8475 UPSTREAM CG34134	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4905271	3R_4905271_SNP [dm3] 3R_9079549_SNP [dm6]	C	A	1.642e^-4	0.959	INTRON pum
2L	21760437	2L_21760437_SNP [dm3] 2L_21760437_SNP [dm6]	C	A	1.648e^-4	0.959	INTRON CG1416
X	13479364	X_13479364_SNP [dm3] X_13585331_SNP [dm6]	T	A	1.649e^-4	0.959	INTRON Tango13
2L	11128912	2L_11128912_SNP [dm3] 2L_11128912_SNP [dm6]	C	G	1.681e^-4	0.959	NON_SYNONYMOUS_CODING Nup160 DOWNSTREAM RfC38
2L	8999996	2L_8999996_SNP [dm3] 2L_8999996_SNP [dm6]	C	T	1.681e^-4	0.959	DOWNSTREAM Try29F INTERGENIC
3L	18376308	3L_18376308_SNP [dm3] 3L_18383208_SNP [dm6]	C	G	1.688e^-4	0.959	INTERGENIC
3R	13470312	3R_13470312_SNP [dm3] 3R_17644590_SNP [dm6]	A	G	1.696e^-4	0.959	UPSTREAM CG43175 DOWNSTREAM tRNA:CR31568 INTRON CG43175
2L	714027	2L_714027_SNP [dm3] 2L_714027_SNP [dm6]	A	G	1.701e^-4	0.959	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8273657	3L_8273657_SNP [dm3] 3L_8280557_SNP [dm6]	A	G	1.717e^-4	0.959	SYNONYMOUS_CODING Dscam4
X	7732439	X_7732439_SNP [dm3] X_7838406_SNP [dm6]	G	T	1.717e^-4	0.959	INTRON CG1402
2R	16702805	2R_16702805_DEL [dm3] 2R_20815300_DEL [dm6]	ACTTAACTT	A	1.718e^-4	0.959	INTERGENIC
2R	16702836	2R_16702836_SNP [dm3] 2R_20815331_SNP [dm6]	T	A	1.718e^-4	0.959	INTERGENIC
2L	14530840	2L_14530840_SNP [dm3] 2L_14530840_SNP [dm6]	T	C	1.749e^-4	0.959	UPSTREAM tRNA:G3:35Bd DOWNSTREAM tRNA:G3:35Be INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2L	14531158	2L_14531158_DEL [dm3] 2L_14531158_DEL [dm6]	AGGGA	A	1.749e^-4	0.959	UPSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19192725	3L_19192725_SNP [dm3] 3L_19199625_SNP [dm6]	T	A	1.791e^-4	0.959	INTRON fz2
2R	19985170	2R_19985170_SNP [dm3] 2R_24097647_SNP [dm6]	G	T	1.812e^-4	0.959	INTRON gek	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16701445	2R_16701445_SNP [dm3] 2R_20813940_SNP [dm6]	A	C	1.820e^-4	0.959	INTERGENIC
2R	12360319	2R_12360319_SNP [dm3] 2R_16472814_SNP [dm6]	T	A	1.830e^-4	0.959	INTERGENIC
3R	25878703	3R_25878703_SNP [dm3] 3R_30052981_SNP [dm6]	C	T	1.834e^-4	0.959	SYNONYMOUS_CODING CG7946 UPSTREAM CG15528 DOWNSTREAM CR44046	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	4099096	X_4099096_SNP [dm3] X_4205063_SNP [dm6]	C	A	1.849e^-4	0.959	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
2L	10888521	2L_10888521_SNP [dm3] 2L_10888521_SNP [dm6]	A	G	1.849e^-4	0.959	SYNONYMOUS_CODING CG14071
3R	23778688	3R_23778688_SNP [dm3] 3R_27952966_SNP [dm6]	C	T	1.870e^-4	0.959	DOWNSTREAM Gp93 INTRON CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14651098	3L_14651098_SNP [dm3] 3L_14657998_SNP [dm6]	G	A	1.882e^-4	0.959	INTRON dlp
X	6249730	X_6249730_INS [dm3] X_6355697_INS [dm6]	T	TCTGGCCAACGCGT...	1.900e^-4	0.959	INTRON kdn
2R	10670298	2R_10670298_SNP [dm3] 2R_14782793_SNP [dm6]	C	T	1.925e^-4	0.959	INTRON kn
2R	19347904	2R_19347904_SNP [dm3] 2R_23460381_SNP [dm6]	G	C	1.925e^-4	0.959	INTRON CG43795
2R	19347906	2R_19347906_SNP [dm3] 2R_23460383_SNP [dm6]	A	G	1.925e^-4	0.959	INTRON CG43795
2L	2527226	2L_2527226_SNP [dm3] 2L_2527226_SNP [dm6]	T	C	1.951e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2527235	2L_2527235_SNP [dm3] 2L_2527235_SNP [dm6]	T	G	1.951e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2527260	2L_2527260_SNP [dm3] 2L_2527260_SNP [dm6]	C	T	1.951e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2527270	2L_2527270_SNP [dm3] 2L_2527270_SNP [dm6]	A	T	1.951e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_cad
3L	15052260	3L_15052260_SNP [dm3] 3L_15059160_SNP [dm6]	C	T	1.979e^-4	0.959	INTRON Sytbeta
2R	9917237	2R_9917237_SNP [dm3] 2R_14029732_SNP [dm6]	A	G	2.001e^-4	0.959	DOWNSTREAM CG18371 INTRON mam
3R	12616781	3R_12616781_SNP [dm3] 3R_16791059_SNP [dm6]	C	T	2.034e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2147069	3L_2147069_SNP [dm3] 3L_2147069_SNP [dm6]	T	C	2.035e^-4	0.959	INTRON zormin
3L	3178728	3L_3178728_SNP [dm3] 3L_3178728_SNP [dm6]	G	A	2.035e^-4	0.959	UPSTREAM Girdin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3179434	3L_3179434_SNP [dm3] 3L_3179434_SNP [dm6]	C	A	2.035e^-4	0.959	UPSTREAM CG14964 INTRON Girdin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
X	10872181	X_10872181_SNP [dm3] X_10978148_SNP [dm6]	G	A	2.048e^-4	0.959	INTRON CG42339
2R	14318278	2R_14318278_SNP [dm3] 2R_18430773_SNP [dm6]	T	C	2.061e^-4	0.959	UTR_3_PRIME CG30118 DOWNSTREAM CG12263
2R	15534452	2R_15534452_SNP [dm3] 2R_19646947_SNP [dm6]	A	T	2.061e^-4	0.959	SYNONYMOUS_CODING CG15905	TF binding site mE1_TFBS_cad
2R	15820114	2R_15820114_SNP [dm3] 2R_19932609_SNP [dm6]	A	C	2.073e^-4	0.959	INTERGENIC
3L	15229037	3L_15229037_SNP [dm3] 3L_15235937_SNP [dm6]	G	C	2.095e^-4	0.959	UTR_5_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	13728096	2R_13728096_SNP [dm3] 2R_17840591_SNP [dm6]	C	A	2.096e^-4	0.959	INTRON grh
3L	3046955	3L_3046955_SNP [dm3] 3L_3046955_SNP [dm6]	T	A	2.097e^-4	0.959	UPSTREAM Sk2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	3046973	3L_3046973_SNP [dm3] 3L_3046973_SNP [dm6]	T	G	2.097e^-4	0.959	UPSTREAM Sk2 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	3047597	3L_3047597_SNP [dm3] 3L_3047597_SNP [dm6]	T	G	2.097e^-4	0.959	SYNONYMOUS_CODING Sk2 UPSTREAM scramb2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3047709	3L_3047709_SNP [dm3] 3L_3047709_SNP [dm6]	C	A	2.097e^-4	0.959	SYNONYMOUS_CODING Sk2 UPSTREAM scramb2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3048476	3L_3048476_SNP [dm3] 3L_3048476_SNP [dm6]	T	C	2.097e^-4	0.959	INTRON Sk2
3L	3048605	3L_3048605_SNP [dm3] 3L_3048605_SNP [dm6]	T	G	2.097e^-4	0.959	INTRON Sk2	TF binding site mE1_TFBS_cad
3L	3668796	3L_3668796_SNP [dm3] 3L_3668796_SNP [dm6]	T	G	2.097e^-4	0.959	INTERGENIC
X	15421266	X_15421266_SNP [dm3] X_15527233_SNP [dm6]	A	C	2.120e^-4	0.959	INTRON Ac13E
3R	23331933	3R_23331933_DEL [dm3] 3R_27506211_DEL [dm6]	AGTCCAAC	A	2.172e^-4	0.959	INTERGENIC
3R	23331962	3R_23331962_SNP [dm3] 3R_27506240_SNP [dm6]	T	C	2.172e^-4	0.959	INTERGENIC
3R	23332060	3R_23332060_DEL [dm3] 3R_27506338_DEL [dm6]	CTTTGGTCAGCTCAGCTAAT...	C	2.172e^-4	0.959	INTERGENIC
3L	10133272	3L_10133272_SNP [dm3] 3L_10140172_SNP [dm6]	C	G	2.195e^-4	0.959	DOWNSTREAM dpr6 INTERGENIC
2R	18223468	2R_18223468_SNP [dm3] 2R_22335963_SNP [dm6]	G	A	2.197e^-4	0.959	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16697637	2R_16697637_SNP [dm3] 2R_20810132_SNP [dm6]	C	T	2.216e^-4	0.959	INTERGENIC
2R	16698542	2R_16698542_SNP [dm3] 2R_20811037_SNP [dm6]	C	T	2.216e^-4	0.959	INTERGENIC
2R	16698548	2R_16698548_SNP [dm3] 2R_20811043_SNP [dm6]	C	T	2.216e^-4	0.959	INTERGENIC
2R	16698550	2R_16698550_SNP [dm3] 2R_20811045_SNP [dm6]	A	G	2.216e^-4	0.959	INTERGENIC
2R	16700202	2R_16700202_SNP [dm3] 2R_20812697_SNP [dm6]	C	T	2.216e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16700236	2R_16700236_SNP [dm3] 2R_20812731_SNP [dm6]	T	C	2.216e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16700266	2R_16700266_SNP [dm3] 2R_20812761_SNP [dm6]	A	T	2.216e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16700869	2R_16700869_SNP [dm3] 2R_20813364_SNP [dm6]	T	C	2.216e^-4	0.959	INTERGENIC
2R	16703770	2R_16703770_SNP [dm3] 2R_20816265_SNP [dm6]	A	G	2.216e^-4	0.959	INTERGENIC
2R	16704614	2R_16704614_SNP [dm3] 2R_20817109_SNP [dm6]	C	T	2.216e^-4	0.959	INTERGENIC
2R	16704654	2R_16704654_SNP [dm3] 2R_20817149_SNP [dm6]	C	G	2.216e^-4	0.959	INTERGENIC
2R	16705624	2R_16705624_SNP [dm3] 2R_20818119_SNP [dm6]	T	C	2.216e^-4	0.959	INTERGENIC
2L	8485551	2L_8485551_SNP [dm3] 2L_8485551_SNP [dm6]	G	A	2.243e^-4	0.959	UPSTREAM unsRNA:d-a INTRON d
2L	4138545	2L_4138545_SNP [dm3] 2L_4138545_SNP [dm6]	T	A	2.284e^-4	0.959	INTERGENIC
2R	14793861	2R_14793861_SNP [dm3] 2R_18906356_SNP [dm6]	C	G	2.284e^-4	0.959	INTRON sano	TF binding site mE1_TFBS_cad
3R	21288878	3R_21288878_DEL [dm3] 3R_25463156_DEL [dm6]	TTGTTGTTGTT...	T	2.284e^-4	0.959	INTRON Fur1
3R	21288891	3R_21288891_SNP [dm3] 3R_25463169_SNP [dm6]	C	T	2.284e^-4	0.959	INTRON Fur1
X	15386254	X_15386254_SNP [dm3] X_15492221_SNP [dm6]	C	A	2.284e^-4	0.959	INTRON Gmap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9334638	3R_9334638_SNP [dm3] 3R_13508916_SNP [dm6]	A	T	2.286e^-4	0.959	INTERGENIC
2L	14530488	2L_14530488_INS [dm3] 2L_14530488_INS [dm6]	G	GCGTCGT	2.310e^-4	0.959	DOWNSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16698529	2R_16698529_INS [dm3] 2R_20811024_INS [dm6]	A	ACTGCAA	2.322e^-4	0.959	INTERGENIC
2R	16698728	2R_16698728_SNP [dm3] 2R_20811223_SNP [dm6]	C	G	2.322e^-4	0.959	INTERGENIC
X	8972832	X_8972832_SNP [dm3] X_9078799_SNP [dm6]	A	T	2.347e^-4	0.959	UPSTREAM CG44325 DOWNSTREAM CG7246 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3L	14686912	3L_14686912_SNP [dm3] 3L_14693812_SNP [dm6]	T	G	2.370e^-4	0.959	INTRON ome
2L	10888296	2L_10888296_SNP [dm3] 2L_10888296_SNP [dm6]	T	G	2.398e^-4	0.959	UTR_3_PRIME CG14071
2R	16702978	2R_16702978_SNP [dm3] 2R_20815473_SNP [dm6]	C	T	2.403e^-4	0.959	INTERGENIC
2R	14075954	2R_14075954_SNP [dm3] 2R_18188449_SNP [dm6]	T	C	2.408e^-4	0.959	UPSTREAM CG14500 DOWNSTREAM CG14499 INTRON CG33958
2L	13056247	2L_13056247_SNP [dm3] 2L_13056247_SNP [dm6]	G	A	2.459e^-4	0.959	INTRON CG9932
2L	10888255	2L_10888255_SNP [dm3] 2L_10888255_SNP [dm6]	A	T	2.463e^-4	0.959	DOWNSTREAM CG14071 INTRON CG14071
2L	4151475	2L_4151475_SNP [dm3] 2L_4151475_SNP [dm6]	G	A	2.463e^-4	0.959	DOWNSTREAM CG2955 INTERGENIC
2L	491866	2L_491866_SNP [dm3] 2L_491866_SNP [dm6]	C	A	2.464e^-4	0.959	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	491870	2L_491870_SNP [dm3] 2L_491870_SNP [dm6]	G	C	2.464e^-4	0.959	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15094934	2L_15094934_SNP [dm3] 2L_15094934_SNP [dm6]	T	C	2.466e^-4	0.959	SYNONYMOUS_CODING CG15270
2R	16705382	2R_16705382_SNP [dm3] 2R_20817877_SNP [dm6]	G	A	2.471e^-4	0.959	INTERGENIC
3L	1854102	3L_1854102_INS [dm3] 3L_1854102_INS [dm6]	G	GCTGGGCTTCG...	2.497e^-4	0.959	INTRON CG13936
3L	1854105	3L_1854105_SNP [dm3] 3L_1854105_SNP [dm6]	C	T	2.497e^-4	0.959	INTRON CG13936
3L	1854106	3L_1854106_SNP [dm3] 3L_1854106_SNP [dm6]	T	G	2.497e^-4	0.959	INTRON CG13936
3L	4111882	3L_4111882_SNP [dm3] 3L_4111882_SNP [dm6]	C	T	2.500e^-4	0.959	SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4111885	3L_4111885_SNP [dm3] 3L_4111885_SNP [dm6]	A	G	2.500e^-4	0.959	SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13778239	2R_13778239_SNP [dm3] 2R_17890734_SNP [dm6]	A	T	2.525e^-4	0.959	UPSTREAM PPO1 INTRON Elk
X	5229498	X_5229498_DEL [dm3] X_5335465_DEL [dm6]	GTGTGCGCCAG...	G	2.525e^-4	0.959	INTERGENIC
X	2831919	X_2831919_SNP [dm3] X_2937886_SNP [dm6]	A	G	2.542e^-4	0.959	SYNONYMOUS_CODING CG3598 UPSTREAM CG14420 INTRON kirre
3R	12662701	3R_12662701_SNP [dm3] 3R_16836979_SNP [dm6]	T	C	2.556e^-4	0.959	INTRON iab-8	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13068958	3L_13068958_SNP [dm3] 3L_13075858_SNP [dm6]	A	T	2.603e^-4	0.959	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da
2L	10888516	2L_10888516_SNP [dm3] 2L_10888516_SNP [dm6]	C	T	2.628e^-4	0.959	NON_SYNONYMOUS_CODING CG14071
2L	12133756	2L_12133756_SNP [dm3] 2L_12133756_SNP [dm6]	A	G	2.628e^-4	0.959	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16700971	2R_16700971_DEL [dm3] 2R_20813466_DEL [dm6]	ACGAGAGA	T	2.628e^-4	0.959	INTERGENIC
2R	16700994	2R_16700994_SNP [dm3] 2R_20813489_SNP [dm6]	T	C	2.628e^-4	0.959	INTERGENIC
X	12956550	X_12956550_SNP [dm3] X_13062517_SNP [dm6]	A	G	2.649e^-4	0.959	DOWNSTREAM mir-971 INTRON rad
3L	9726657	3L_9726657_INS [dm3] 3L_9733557_INS [dm6]	G	AA	2.667e^-4	0.959	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
3L	9726673	3L_9726673_SNP [dm3] 3L_9733573_SNP [dm6]	T	C	2.667e^-4	0.959	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
2L	5957769	2L_5957769_SNP [dm3] 2L_5957769_SNP [dm6]	C	G	2.672e^-4	0.959	UPSTREAM CG13998 DOWNSTREAM Vm26Ac & 1 other INTERGENIC
3L	3178137	3L_3178137_SNP [dm3] 3L_3178137_SNP [dm6]	C	A	2.711e^-4	0.959	UPSTREAM Girdin INTRON CG14964	TF binding site BDTNP1_TFBS_dl
3R	8093431	3R_8093431_SNP [dm3] 3R_12267709_SNP [dm6]	A	G	2.746e^-4	0.959	INTRON svp
2L	7521634	2L_7521634_SNP [dm3] 2L_7521634_SNP [dm6]	T	C	2.748e^-4	0.959	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	11717284	2R_11717284_SNP [dm3] 2R_15829779_SNP [dm6]	T	C	2.748e^-4	0.959	INTRON tun & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17727605	X_17727605_SNP [dm3] X_17833572_SNP [dm6]	G	A	2.749e^-4	0.959	INTRON CG6398	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	2477369	X_2477369_SNP [dm3] X_2583336_SNP [dm6]	T	C	2.753e^-4	0.959	SYNONYMOUS_CODING CG13759 DOWNSTREAM CG13760	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2477381	X_2477381_SNP [dm3] X_2583348_SNP [dm6]	T	C	2.753e^-4	0.959	SYNONYMOUS_CODING CG13759 DOWNSTREAM CG13760	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14273317	2R_14273317_SNP [dm3] 2R_18385812_SNP [dm6]	A	G	2.754e^-4	0.959	UPSTREAM CG15067 & 1 other DOWNSTREAM CG18107 INTERGENIC
3L	3177647	3L_3177647_SNP [dm3] 3L_3177647_SNP [dm6]	T	A	2.785e^-4	0.959	SYNONYMOUS_CODING CG14964
2L	5955986	2L_5955986_SNP [dm3] 2L_5955986_SNP [dm6]	G	T	2.793e^-4	0.959	SYNONYMOUS_CODING CG13999 DOWNSTREAM CG9044 & 1 other
2L	5955989	2L_5955989_SNP [dm3] 2L_5955989_SNP [dm6]	G	T	2.793e^-4	0.959	SYNONYMOUS_CODING CG13999 DOWNSTREAM CG9044 & 1 other
2L	5958205	2L_5958205_SNP [dm3] 2L_5958205_SNP [dm6]	A	T	2.793e^-4	0.959	SYNONYMOUS_CODING Vm26Ac DOWNSTREAM Vm26Ab	TF binding site mE1_TFBS_cad
2R	14080430	2R_14080430_SNP [dm3] 2R_18192925_SNP [dm6]	G	C	2.793e^-4	0.959	UPSTREAM CG33958 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	6253798	X_6253798_SNP [dm3] X_6359765_SNP [dm6]	C	A	2.793e^-4	0.959	SYNONYMOUS_CODING kdn	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
X	4877676	X_4877676_SNP [dm3] X_4983643_SNP [dm6]	G	A	2.800e^-4	0.959	INTRON CR44833	regulatory region REDfly_CRMs
X	8421538	X_8421538_SNP [dm3] X_8527505_SNP [dm6]	T	C	2.812e^-4	0.959	NON_SYNONYMOUS_CODING PIP82 INTRON Nrg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15094942	2L_15094942_SNP [dm3] 2L_15094942_SNP [dm6]	C	T	2.827e^-4	0.959	SYNONYMOUS_CODING CG15270
2R	10089703	2R_10089703_SNP [dm3] 2R_14202198_SNP [dm6]	C	A	2.904e^-4	0.959	SYNONYMOUS_CODING Sox15 UPSTREAM VGAT	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1988981	2L_1988981_SNP [dm3] 2L_1988981_SNP [dm6]	T	G	2.927e^-4	0.959	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC	TF binding site mE1_TFBS_cad
2L	1989157	2L_1989157_SNP [dm3] 2L_1989157_SNP [dm6]	A	T	2.927e^-4	0.959	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC
3R	23656203	3R_23656203_SNP [dm3] 3R_27830481_SNP [dm6]	T	C	2.948e^-4	0.959	INTRON CG34353
X	10576534	X_10576534_SNP [dm3] X_10682501_SNP [dm6]	A	G	2.949e^-4	0.959	INTRON X11Lbeta
X	9002284	X_9002284_SNP [dm3] X_9108251_SNP [dm6]	C	T	2.949e^-4	0.959	UTR_3_PRIME Arfrp1 UPSTREAM AP-1gamma	TF binding site BDTNP1_TFBS_dl
X	9002394	X_9002394_SNP [dm3] X_9108361_SNP [dm6]	T	C	2.949e^-4	0.959	UPSTREAM AP-1gamma DOWNSTREAM Arfrp1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5159066	2L_5159066_SNP [dm3] 2L_5159066_SNP [dm6]	A	C	2.959e^-4	0.959	SYNONYMOUS_CODING Msp300 DOWNSTREAM Msp300 INTRON Msp300
2R	5889010	2R_5889010_SNP [dm3] 2R_10001505_SNP [dm6]	T	A	2.979e^-4	0.959	INTRON Pka-R2
2R	17292040	2R_17292040_SNP [dm3] 2R_21404535_SNP [dm6]	T	G	2.989e^-4	0.959	INTRON Sdc
2R	14587777	2R_14587777_SNP [dm3] 2R_18700272_SNP [dm6]	G	A	3.002e^-4	0.959	SYNONYMOUS_CODING Sik3
2R	16701846	2R_16701846_SNP [dm3] 2R_20814341_SNP [dm6]	G	T	3.007e^-4	0.959	INTERGENIC
2L	4227045	2L_4227045_SNP [dm3] 2L_4227045_SNP [dm6]	A	C	3.008e^-4	0.959	UTR_5_PRIME CG3702 UPSTREAM RpL40 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2R	14844365	2R_14844365_SNP [dm3] 2R_18956860_SNP [dm6]	T	C	3.019e^-4	0.959	SYNONYMOUS_CODING sano	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14844371	2R_14844371_SNP [dm3] 2R_18956866_SNP [dm6]	T	C	3.019e^-4	0.959	SYNONYMOUS_CODING sano	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17954097	2R_17954097_SNP [dm3] 2R_22066592_SNP [dm6]	T	G	3.019e^-4	0.959	UPSTREAM Snp & 1 other INTRON Snp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7134885	3L_7134885_SNP [dm3] 3L_7141785_SNP [dm6]	T	C	3.026e^-4	0.959	SYNONYMOUS_CODING melt
3R	9335495	3R_9335495_SNP [dm3] 3R_13509773_SNP [dm6]	C	A	3.077e^-4	0.959	INTERGENIC
3L	14522910	3L_14522910_SNP [dm3] 3L_14529810_SNP [dm6]	T	C	3.085e^-4	0.959	INTRON bbg
3L	14522936	3L_14522936_SNP [dm3] 3L_14529836_SNP [dm6]	G	A	3.085e^-4	0.959	INTRON bbg
2R	10259136	2R_10259136_SNP [dm3] 2R_14371631_SNP [dm6]	C	T	3.117e^-4	0.959	NON_SYNONYMOUS_CODING Obp50b UTR_5_PRIME Obp50c UPSTREAM Obp50a
2R	13595164	2R_13595164_SNP [dm3] 2R_17707659_SNP [dm6]	T	C	3.117e^-4	0.959	SYNONYMOUS_CODING CG6424	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16051355	2R_16051355_DEL [dm3] 2R_20163850_DEL [dm6]	GTATA	G	3.117e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	10326595	3R_10326595_SNP [dm3] 3R_14500873_SNP [dm6]	C	T	3.133e^-4	0.959	INTRON CR44177
2R	19102543	2R_19102543_SNP [dm3] 2R_23215020_SNP [dm6]	C	A	3.136e^-4	0.959	INTERGENIC
2L	3301226	2L_3301226_SNP [dm3] 2L_3301226_SNP [dm6]	G	A	3.176e^-4	0.959	SYNONYMOUS_CODING CG9663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6064866	3L_6064866_SNP [dm3] 3L_6071766_SNP [dm6]	T	A	3.188e^-4	0.959	UPSTREAM CG6602 DOWNSTREAM CG42269 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	4227534	2L_4227534_SNP [dm3] 2L_4227534_SNP [dm6]	A	G	3.203e^-4	0.959	UPSTREAM RpL40 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2L	4227570	2L_4227570_SNP [dm3] 2L_4227570_SNP [dm6]	T	C	3.203e^-4	0.959	UPSTREAM RpL40 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2L	7514768	2L_7514768_SNP [dm3] 2L_7514768_SNP [dm6]	C	T	3.227e^-4	0.959	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	7514771	2L_7514771_SNP [dm3] 2L_7514771_SNP [dm6]	C	T	3.227e^-4	0.959	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	7514806	2L_7514806_SNP [dm3] 2L_7514806_SNP [dm6]	A	T	3.227e^-4	0.959	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	7514825	2L_7514825_SNP [dm3] 2L_7514825_SNP [dm6]	T	G	3.227e^-4	0.959	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
2L	7515722	2L_7515722_SNP [dm3] 2L_7515722_SNP [dm6]	G	T	3.227e^-4	0.959	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_D
X	18253095	X_18253095_SNP [dm3] X_18359062_SNP [dm6]	T	C	3.234e^-4	0.959	SPLICE_SITE_REGION CG6106 INTRON CG6106	TF binding site mE1_TFBS_HSA
3R	4905273	3R_4905273_SNP [dm3] 3R_9079551_SNP [dm6]	G	T	3.248e^-4	0.959	INTRON pum
3R	4905278	3R_4905278_SNP [dm3] 3R_9079556_SNP [dm6]	T	C	3.248e^-4	0.959	INTRON pum
3R	4905280	3R_4905280_SNP [dm3] 3R_9079558_SNP [dm6]	T	G	3.248e^-4	0.959	INTRON pum
3R	4905296	3R_4905296_SNP [dm3] 3R_9079574_SNP [dm6]	A	G	3.248e^-4	0.959	INTRON pum
2L	13905476	2L_13905476_SNP [dm3] 2L_13905476_SNP [dm6]	A	G	3.253e^-4	0.959	UPSTREAM Smg5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13905513	2L_13905513_DEL [dm3] 2L_13905513_DEL [dm6]	AA	A	3.253e^-4	0.959	UPSTREAM Ance & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5958773	2L_5958773_SNP [dm3] 2L_5958773_SNP [dm6]	G	A	3.253e^-4	0.959	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3668807	3L_3668807_SNP [dm3] 3L_3668807_SNP [dm6]	C	T	3.264e^-4	0.959	INTERGENIC
3R	14996979	3R_14996979_SNP [dm3] 3R_19171257_SNP [dm6]	T	C	3.295e^-4	0.959	DOWNSTREAM sqz INTERGENIC
3L	15127848	3L_15127848_SNP [dm3] 3L_15134748_SNP [dm6]	G	T	3.298e^-4	0.959	UPSTREAM scaRNA:MeU5-U42 INTRON CG12316
2L	8978749	2L_8978749_SNP [dm3] 2L_8978749_SNP [dm6]	A	G	3.309e^-4	0.959	SYNONYMOUS_CODING CG13101
2R	14416334	2R_14416334_SNP [dm3] 2R_18528829_SNP [dm6]	G	A	3.309e^-4	0.959	INTRON CG10924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14420258	2R_14420258_SNP [dm3] 2R_18532753_SNP [dm6]	C	T	3.309e^-4	0.959	SYNONYMOUS_CODING CG10924 UTR_5_PRIME CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	14420735	2R_14420735_SNP [dm3] 2R_18533230_SNP [dm6]	T	C	3.309e^-4	0.959	SYNONYMOUS_CODING CG10924	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14421260	2R_14421260_SNP [dm3] 2R_18533755_SNP [dm6]	T	G	3.309e^-4	0.959	SYNONYMOUS_CODING CG10924	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14422176	2R_14422176_SNP [dm3] 2R_18534671_SNP [dm6]	G	A	3.309e^-4	0.959	UTR_3_PRIME CG10924 DOWNSTREAM CG10924
2R	14422975	2R_14422975_SNP [dm3] 2R_18535470_SNP [dm6]	G	A	3.309e^-4	0.959	UTR_3_PRIME CG10924 DOWNSTREAM CG10924
2R	14422991	2R_14422991_SNP [dm3] 2R_18535486_SNP [dm6]	C	T	3.309e^-4	0.959	UTR_3_PRIME CG10924 DOWNSTREAM CG10924
2R	14422994	2R_14422994_SNP [dm3] 2R_18535489_SNP [dm6]	G	C	3.309e^-4	0.959	UTR_3_PRIME CG10924 DOWNSTREAM CG10924
2R	14423009	2R_14423009_DEL [dm3] 2R_18535504_DEL [dm6]	GG	G	3.309e^-4	0.959	UTR_3_PRIME CG10924 DOWNSTREAM CG10924
2R	14423033	2R_14423033_SNP [dm3] 2R_18535528_SNP [dm6]	T	A	3.309e^-4	0.959	UTR_3_PRIME CG10924 DOWNSTREAM CG10924
2R	14423061	2R_14423061_SNP [dm3] 2R_18535556_SNP [dm6]	A	G	3.309e^-4	0.959	UTR_3_PRIME CG10924 DOWNSTREAM CG10924
2R	14423296	2R_14423296_SNP [dm3] 2R_18535791_SNP [dm6]	C	T	3.309e^-4	0.959	UPSTREAM Pepck & 1 other DOWNSTREAM CG10924 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15815576	2R_15815576_SNP [dm3] 2R_19928071_SNP [dm6]	A	T	3.309e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	16705902	2R_16705902_SNP [dm3] 2R_20818397_SNP [dm6]	G	A	3.309e^-4	0.959	INTERGENIC
2R	16706234	2R_16706234_SNP [dm3] 2R_20818729_SNP [dm6]	G	A	3.309e^-4	0.959	INTERGENIC
2R	16950515	2R_16950515_SNP [dm3] 2R_21063010_SNP [dm6]	G	A	3.309e^-4	0.959	NON_SYNONYMOUS_CODING Cht8 DOWNSTREAM Cht12	TF binding site mE1_TFBS_chinmo
2R	17244282	2R_17244282_SNP [dm3] 2R_21356777_SNP [dm6]	G	A	3.309e^-4	0.959	SYNONYMOUS_CODING cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17244429	2R_17244429_SNP [dm3] 2R_21356924_SNP [dm6]	T	C	3.309e^-4	0.959	SYNONYMOUS_CODING cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3560255	2R_3560255_SNP [dm3] 2R_7672750_SNP [dm6]	T	C	3.309e^-4	0.959	DOWNSTREAM mRpL52 INTERGENIC	TF binding site mE1_TFBS_inv
3L	1841931	3L_1841931_SNP [dm3] 3L_1841931_SNP [dm6]	C	T	3.309e^-4	0.959	INTRON Cpr62Bc
3L	2565155	3L_2565155_SNP [dm3] 3L_2565155_SNP [dm6]	C	T	3.309e^-4	0.959	INTRON msn
X	13331142	X_13331142_DEL [dm3] X_13437109_DEL [dm6]	GCCTCTGC	G	3.309e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13331154	X_13331154_SNP [dm3] X_13437121_SNP [dm6]	C	T	3.309e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13331155	X_13331155_DEL [dm3] X_13437122_DEL [dm6]	TGCTTCGCCTGAAATA...	T	3.309e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15859782	2R_15859782_SNP [dm3] 2R_19972277_SNP [dm6]	C	T	3.312e^-4	0.959	INTERGENIC
2L	8979483	2L_8979483_SNP [dm3] 2L_8979483_SNP [dm6]	G	A	3.316e^-4	0.959	INTRON CG13101
2R	10816264	2R_10816264_SNP [dm3] 2R_14928759_SNP [dm6]	T	G	3.316e^-4	0.959	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14418974	2R_14418974_SNP [dm3] 2R_18531469_SNP [dm6]	C	G	3.316e^-4	0.959	UPSTREAM CG10924 INTRON CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14420249	2R_14420249_SNP [dm3] 2R_18532744_SNP [dm6]	A	C	3.316e^-4	0.959	SYNONYMOUS_CODING CG10924 UTR_5_PRIME CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	6321973	X_6321973_SNP [dm3] X_6427940_SNP [dm6]	G	T	3.319e^-4	0.959	INTRON CG42340
2R	16229964	2R_16229964_SNP [dm3] 2R_20342459_SNP [dm6]	A	T	3.329e^-4	0.959	INTRON CG16739
2R	16698500	2R_16698500_SNP [dm3] 2R_20810995_SNP [dm6]	A	G	3.333e^-4	0.959	INTERGENIC
2L	8633802	2L_8633802_SNP [dm3] 2L_8633802_SNP [dm6]	G	A	3.334e^-4	0.959	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8484746	2L_8484746_SNP [dm3] 2L_8484746_SNP [dm6]	T	C	3.358e^-4	0.959	UPSTREAM unsRNA:d-a INTRON d	TF binding site mE1_TFBS_chinmo
2L	8484799	2L_8484799_SNP [dm3] 2L_8484799_SNP [dm6]	C	T	3.358e^-4	0.959	UPSTREAM unsRNA:d-a INTRON d	TF binding site mE1_TFBS_chinmo
2L	8484818	2L_8484818_SNP [dm3] 2L_8484818_SNP [dm6]	G	T	3.358e^-4	0.959	SYNONYMOUS_CODING d UPSTREAM unsRNA:d-a	TF binding site mE1_TFBS_chinmo
2L	8485789	2L_8485789_SNP [dm3] 2L_8485789_SNP [dm6]	T	C	3.358e^-4	0.959	INTRON d EXON unsRNA:d-a	TF binding site mE1_TFBS_cad
2L	9627333	2L_9627333_SNP [dm3] 2L_9627333_SNP [dm6]	C	A	3.358e^-4	0.959	INTERGENIC
3L	15836111	3L_15836111_SNP [dm3] 3L_15843011_SNP [dm6]	A	T	3.366e^-4	0.959	DOWNSTREAM mir-263b INTRON CG32150
2L	1988997	2L_1988997_SNP [dm3] 2L_1988997_SNP [dm6]	G	A	3.390e^-4	0.959	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC	TF binding site mE1_TFBS_cad
3R	27175849	3R_27175849_DEL [dm3] 3R_31350127_DEL [dm6]	CC	C	3.394e^-4	0.959	INTRON CG34347
3L	8273645	3L_8273645_SNP [dm3] 3L_8280545_SNP [dm6]	C	A	3.400e^-4	0.959	SYNONYMOUS_CODING Dscam4
2R	16701740	2R_16701740_INS [dm3] 2R_20814235_INS [dm6]	C	CC	3.420e^-4	0.959	INTERGENIC
2L	3762574	2L_3762574_DEL [dm3] 2L_3762574_DEL [dm6]	TGAC	A	3.420e^-4	0.959	INTRON CG43707	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	16545015	X_16545015_DEL [dm3] X_16650982_DEL [dm6]	ATTCAAGATAAAATTAACCT...	A	3.424e^-4	0.959	UPSTREAM CG32573 & 1 other DOWNSTREAM mthl1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
X	16545096	X_16545096_DEL [dm3] X_16651063_DEL [dm6]	TTG	T	3.424e^-4	0.959	UPSTREAM CG32573 & 1 other DOWNSTREAM mthl1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	19206293	3L_19206293_SNP [dm3] 3L_19213193_SNP [dm6]	C	T	3.459e^-4	0.959	INTRON fz2
2L	14438780	2L_14438780_SNP [dm3] 2L_14438780_SNP [dm6]	C	T	3.485e^-4	0.959	INTERGENIC
2L	3259282	2L_3259282_SNP [dm3] 2L_3259282_SNP [dm6]	C	T	3.485e^-4	0.959	INTERGENIC
2L	6541095	2L_6541095_SNP [dm3] 2L_6541095_SNP [dm6]	A	G	3.485e^-4	0.959	INTRON eya	TF binding site mE1_TFBS_inv mE1_TFBS_Kr
2R	14395445	2R_14395445_SNP [dm3] 2R_18507940_SNP [dm6]	C	T	3.516e^-4	0.959	INTERGENIC
X	21435837	X_21435837_SNP [dm3] X_21564810_SNP [dm6]	A	T	3.533e^-4	0.959	INTERGENIC
2L	11750312	2L_11750312_SNP [dm3] 2L_11750312_SNP [dm6]	A	T	3.551e^-4	0.959	INTERGENIC
2L	11750362	2L_11750362_SNP [dm3] 2L_11750362_SNP [dm6]	T	C	3.551e^-4	0.959	INTERGENIC
2L	11750363	2L_11750363_DEL [dm3] 2L_11750363_DEL [dm6]	TATGCGC	T	3.551e^-4	0.959	INTERGENIC
2L	11750372	2L_11750372_SNP [dm3] 2L_11750372_SNP [dm6]	G	A	3.551e^-4	0.959	INTERGENIC
X	17727667	X_17727667_SNP [dm3] X_17833634_SNP [dm6]	T	C	3.554e^-4	0.959	INTRON CG6398	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	14571033	X_14571033_SNP [dm3] X_14677000_SNP [dm6]	A	G	3.574e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16956189	2R_16956189_SNP [dm3] 2R_21068684_SNP [dm6]	C	A	3.577e^-4	0.959	INTRON Cht9 EXON CR44703	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19578211	2R_19578211_SNP [dm3] 2R_23690688_SNP [dm6]	T	G	3.588e^-4	0.959	UTR_3_PRIME Pal2 & 1 other DOWNSTREAM CG30183 & 1 other
3R	15154301	3R_15154301_SNP [dm3] 3R_19328579_SNP [dm6]	A	G	3.610e^-4	0.959	INTERGENIC
2R	12478014	2R_12478014_SNP [dm3] 2R_16590509_SNP [dm6]	C	G	3.621e^-4	0.959	SYNONYMOUS_CODING CG8306	TF binding site mE1_TFBS_sens
2L	15051048	2L_15051048_SNP [dm3] 2L_15051048_SNP [dm6]	T	A	3.624e^-4	0.959	SYNONYMOUS_CODING ck	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	23200680	3R_23200680_SNP [dm3] 3R_27374958_SNP [dm6]	C	G	3.632e^-4	0.959	DOWNSTREAM side INTERGENIC
2R	17576276	2R_17576276_SNP [dm3] 2R_21688771_SNP [dm6]	T	C	3.641e^-4	0.959	UPSTREAM CG10307 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2R	17576277	2R_17576277_SNP [dm3] 2R_21688772_SNP [dm6]	C	T	3.641e^-4	0.959	UPSTREAM CG10307 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2R	16229981	2R_16229981_SNP [dm3] 2R_20342476_SNP [dm6]	T	A	3.651e^-4	0.959	INTRON CG16739
2L	17362757	2L_17362757_SNP [dm3] 2L_17362757_SNP [dm6]	C	G	3.653e^-4	0.959	UPSTREAM CG31804 INTERGENIC
3L	18006200	3L_18006200_DEL [dm3] 3L_18013100_DEL [dm6]	GGCCG	G	3.658e^-4	0.959	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4228231	2L_4228231_SNP [dm3] 2L_4228231_SNP [dm6]	G	A	3.661e^-4	0.959	SYNONYMOUS_CODING RpL40 UPSTREAM CR44608	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	20012144	X_20012144_SNP [dm3] X_20118111_SNP [dm6]	A	G	3.661e^-4	0.959	INTERGENIC
3L	1862565	3L_1862565_SNP [dm3] 3L_1862565_SNP [dm6]	A	G	3.678e^-4	0.959	UPSTREAM R DOWNSTREAM HBS1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	17710549	2L_17710549_SNP [dm3] 2L_17710549_SNP [dm6]	C	T	3.693e^-4	0.959	INTRON CadN	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11820060	2L_11820060_DEL [dm3] 2L_11820060_DEL [dm6]	ATT	A	3.734e^-4	0.959	INTRON Pde1c
2L	18540519	2L_18540519_SNP [dm3] 2L_18540519_SNP [dm6]	A	T	3.738e^-4	0.959	INTRON Pde11
2L	18540521	2L_18540521_SNP [dm3] 2L_18540521_SNP [dm6]	C	T	3.738e^-4	0.959	INTRON Pde11
2L	734294	2L_734294_SNP [dm3] 2L_734294_SNP [dm6]	A	G	3.738e^-4	0.959	INTERGENIC
2L	4138549	2L_4138549_SNP [dm3] 2L_4138549_SNP [dm6]	C	A	3.744e^-4	0.959	INTERGENIC
X	2782271	X_2782271_SNP [dm3] X_2888238_SNP [dm6]	C	G	3.749e^-4	0.959	INTRON kirre
2R	6954500	2R_6954500_INS [dm3] 2R_11066995_INS [dm6]	A	AA	3.756e^-4	0.959	INTRON luna
X	21436223	X_21436223_SNP [dm3] X_21565196_SNP [dm6]	C	T	3.758e^-4	0.959	INTERGENIC	transposable element FlyBase
2L	5319007	2L_5319007_SNP [dm3] 2L_5319007_SNP [dm6]	A	G	3.762e^-4	0.959	SYNONYMOUS_CODING Ncoa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5320942	2L_5320942_SNP [dm3] 2L_5320942_SNP [dm6]	C	T	3.762e^-4	0.959	SYNONYMOUS_CODING Ncoa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14935318	2L_14935318_SNP [dm3] 2L_14935318_SNP [dm6]	A	T	3.773e^-4	0.959	INTRON CG42313
X	8403433	X_8403433_SNP [dm3] X_8509400_SNP [dm6]	A	T	3.808e^-4	0.959	UPSTREAM CG33181 INTRON CG33181
3R	12328177	3R_12328177_SNP [dm3] 3R_16502455_SNP [dm6]	G	C	3.814e^-4	0.959	UPSTREAM CG42342 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17954055	2R_17954055_SNP [dm3] 2R_22066550_SNP [dm6]	A	G	3.816e^-4	0.959	UPSTREAM Snp & 1 other INTRON Snp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	2526126	2L_2526126_SNP [dm3] 2L_2526126_SNP [dm6]	C	A	3.821e^-4	0.959	INTERGENIC
3R	8118763	3R_8118763_SNP [dm3] 3R_12293041_SNP [dm6]	G	A	3.821e^-4	0.959	INTRON svp
2R	3174930	2R_3174930_SNP [dm3] 2R_7287425_SNP [dm6]	C	A	3.832e^-4	0.959	INTRON pwn
2L	13705071	2L_13705071_SNP [dm3] 2L_13705071_SNP [dm6]	A	T	3.835e^-4	0.959	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
3L	16697275	3L_16697275_SNP [dm3] 3L_16704175_SNP [dm6]	A	G	3.861e^-4	0.959	UPSTREAM CG9692 INTRON Lasp & 1 other
3L	23169522	3L_23169522_SNP [dm3] 3L_23176422_SNP [dm6]	G	A	3.861e^-4	0.959	INTRON CG34031	transposable element FlyBase
2L	18541810	2L_18541810_SNP [dm3] 2L_18541810_SNP [dm6]	G	C	3.883e^-4	0.959	INTRON Pde11	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13742787	2R_13742787_SNP [dm3] 2R_17855282_SNP [dm6]	T	G	3.952e^-4	0.959	UTR_5_PRIME olf186-F DOWNSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
3R	9052671	3R_9052671_SNP [dm3] 3R_13226949_SNP [dm6]	C	G	3.980e^-4	0.959	UTR_3_PRIME Ace INTRON Ace
3L	19576788	3L_19576788_SNP [dm3] 3L_19583688_SNP [dm6]	A	G	3.993e^-4	0.959	INTRON Shal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	19578260	3L_19578260_SNP [dm3] 3L_19585160_SNP [dm6]	G	A	3.993e^-4	0.959	UTR_3_PRIME CG9231 UPSTREAM Shal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	19579753	3L_19579753_SNP [dm3] 3L_19586653_SNP [dm6]	C	T	3.993e^-4	0.959	SYNONYMOUS_CODING CG9330 UPSTREAM CG9231	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_sens
X	8288450	X_8288450_SNP [dm3] X_8394417_SNP [dm6]	G	A	4.005e^-4	0.959	INTERGENIC
3R	23008077	3R_23008077_SNP [dm3] 3R_27182355_SNP [dm6]	A	C	4.006e^-4	0.959	INTRON Ser
2L	19696512	2L_19696512_SNP [dm3] 2L_19696512_SNP [dm6]	A	C	4.034e^-4	0.959	INTRON Lar
2L	3300912	2L_3300912_SNP [dm3] 2L_3300912_SNP [dm6]	T	G	4.035e^-4	0.959	INTRON CG9663
3L	5826900	3L_5826900_SNP [dm3] 3L_5833800_SNP [dm6]	G	T	4.067e^-4	0.959	INTRON vn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	17008777	3L_17008777_SNP [dm3] 3L_17015677_SNP [dm6]	G	A	4.074e^-4	0.959	UTR_5_PRIME CG6664 UPSTREAM CG7728 INTRON CG6664	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	19113474	2L_19113474_SNP [dm3] 2L_19113474_SNP [dm6]	C	T	4.088e^-4	0.959	SYNONYMOUS_CODING amd UPSTREAM CG10561	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	2760117	2R_2760117_SNP [dm3] 2R_6872612_SNP [dm6]	A	G	4.113e^-4	0.959	UTR_5_PRIME coro UPSTREAM CR44169 DOWNSTREAM CG9447	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14363314	X_14363314_SNP [dm3] X_14469281_SNP [dm6]	G	T	4.113e^-4	0.959	INTERGENIC
X	22078349	X_22078349_DEL [dm3] X_22676513_DEL [dm6]	CT	C	4.113e^-4	0.959	INTRON CR44997
2L	12133881	2L_12133881_SNP [dm3] 2L_12133881_SNP [dm6]	A	T	4.127e^-4	0.959	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	15537725	2R_15537725_SNP [dm3] 2R_19650220_SNP [dm6]	T	C	4.127e^-4	0.959	INTERGENIC
2R	15537737	2R_15537737_SNP [dm3] 2R_19650232_SNP [dm6]	C	T	4.127e^-4	0.959	INTERGENIC
3R	9335377	3R_9335377_SNP [dm3] 3R_13509655_SNP [dm6]	C	G	4.147e^-4	0.959	INTERGENIC
3R	6954126	3R_6954126_SNP [dm3] 3R_11128404_SNP [dm6]	G	A	4.157e^-4	0.959	UPSTREAM Ugt86Dd INTERGENIC
3R	6954193	3R_6954193_SNP [dm3] 3R_11128471_SNP [dm6]	A	G	4.157e^-4	0.959	UPSTREAM Ugt86Dd INTERGENIC
2R	13956596	2R_13956596_SNP [dm3] 2R_18069091_SNP [dm6]	G	C	4.181e^-4	0.959	INTRON CG34386
2R	19965266	2R_19965266_SNP [dm3] 2R_24077743_SNP [dm6]	C	T	4.181e^-4	0.959	UTR_3_PRIME Mlp60A DOWNSTREAM CG10339	TF binding site mE1_TFBS_cad
3R	19442819	3R_19442819_SNP [dm3] 3R_23617097_SNP [dm6]	T	G	4.186e^-4	0.959	INTRON CG31145
3R	24673311	3R_24673311_SNP [dm3] 3R_28847589_SNP [dm6]	C	T	4.186e^-4	0.959	INTRON spg
X	19443378	X_19443378_SNP [dm3] X_19549345_SNP [dm6]	A	G	4.204e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8981072	2L_8981072_SNP [dm3] 2L_8981072_SNP [dm6]	C	T	4.208e^-4	0.959	INTRON CG13101 & 1 other
2R	16700944	2R_16700944_SNP [dm3] 2R_20813439_SNP [dm6]	T	A	4.261e^-4	0.959	INTERGENIC
2R	16700951	2R_16700951_SNP [dm3] 2R_20813446_SNP [dm6]	A	G	4.261e^-4	0.959	INTERGENIC
3R	9016066	3R_9016066_SNP [dm3] 3R_13190344_SNP [dm6]	A	G	4.271e^-4	0.959	DOWNSTREAM CG14380 INTERGENIC
2L	1889111	2L_1889111_SNP [dm3] 2L_1889111_SNP [dm6]	T	G	4.274e^-4	0.959	INTRON CG7337
3L	1058843	3L_1058843_SNP [dm3] 3L_1058843_SNP [dm6]	T	C	4.274e^-4	0.959	INTRON bab1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6107871	2L_6107871_SNP [dm3] 2L_6107871_SNP [dm6]	G	A	4.288e^-4	0.959	INTRON stai
X	7732800	X_7732800_SNP [dm3] X_7838767_SNP [dm6]	T	C	4.346e^-4	0.959	SYNONYMOUS_CODING CG1402
2L	11514958	2L_11514958_SNP [dm3] 2L_11514958_SNP [dm6]	G	A	4.346e^-4	0.959	SYNONYMOUS_CODING CG6509	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16370769	2L_16370769_SNP [dm3] 2L_16370769_SNP [dm6]	A	T	4.346e^-4	0.959	INTERGENIC
2R	16770330	2R_16770330_INS [dm3] 2R_20882825_INS [dm6]	A	AGTGGTACTGATA...	4.346e^-4	0.959	DOWNSTREAM otp & 1 other INTERGENIC
2R	16701010	2R_16701010_SNP [dm3] 2R_20813505_SNP [dm6]	C	T	4.350e^-4	0.959	INTERGENIC
3R	9335131	3R_9335131_DEL [dm3] 3R_13509409_DEL [dm6]	TTA	C	4.364e^-4	0.959	INTERGENIC
3L	16351236	3L_16351236_INS [dm3] 3L_16358136_INS [dm6]	T	TCTTGAGATTACCGCGCAAA...	4.378e^-4	0.959	INTRON CG45057
2L	14530981	2L_14530981_DEL [dm3] 2L_14530981_DEL [dm6]	CCATCGATGCCGAATCGTC...	C	4.408e^-4	0.959	UPSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10685352	2R_10685352_SNP [dm3] 2R_14797847_SNP [dm6]	A	T	4.412e^-4	0.959	UPSTREAM kn INTRON kn
2R	6954479	2R_6954479_INS [dm3] 2R_11066974_INS [dm6]	T	TC	4.427e^-4	0.959	INTRON luna
2R	6954482	2R_6954482_DEL [dm3] 2R_11066977_DEL [dm6]	CT	C	4.427e^-4	0.959	INTRON luna
2L	6108350	2L_6108350_SNP [dm3] 2L_6108350_SNP [dm6]	T	C	4.429e^-4	0.959	INTRON stai
4	287965	4_287965_SNP [dm3] 4_267339_SNP [dm6]	C	G	4.429e^-4	0.959	DOWNSTREAM NfI INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10169818	2L_10169818_SNP [dm3] 2L_10169818_SNP [dm6]	A	G	4.440e^-4	0.959	INTRON CG44153
2L	15431703	2L_15431703_SNP [dm3] 2L_15431703_SNP [dm6]	C	T	4.463e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	24334043	3R_24334043_SNP [dm3] 3R_28508321_SNP [dm6]	C	T	4.491e^-4	0.959	INTRON Dhc98D	TF binding site mE1_TFBS_chinmo
X	13982454	X_13982454_SNP [dm3] X_14088421_SNP [dm6]	T	C	4.500e^-4	0.959	INTERGENIC
3R	26334624	3R_26334624_SNP [dm3] 3R_30508902_SNP [dm6]	T	G	4.505e^-4	0.959	NON_SYNONYMOUS_CODING CG34041 SPLICE_SITE_REGION CG34041 DOWNSTREAM CG15539 & 1 other	TF binding site mE1_TFBS_inv
X	8575763	X_8575763_SNP [dm3] X_8681730_SNP [dm6]	A	G	4.522e^-4	0.959	UTR_5_PRIME CG11284 DOWNSTREAM CG12772	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx
3R	19501760	3R_19501760_SNP [dm3] 3R_23676038_SNP [dm6]	C	T	4.534e^-4	0.959	INTERGENIC
2L	1988956	2L_1988956_INS [dm3] 2L_1988956_INS [dm6]	T	TT	4.538e^-4	0.959	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC	TF binding site mE1_TFBS_cad
3R	9225059	3R_9225059_SNP [dm3] 3R_13399337_SNP [dm6]	A	G	4.542e^-4	0.959	SYNONYMOUS_CODING CG9796 DOWNSTREAM CG14377	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8452340	2L_8452340_SNP [dm3] 2L_8452340_SNP [dm6]	G	A	4.562e^-4	0.959	UPSTREAM fu12 INTRON fu12
2L	8452349	2L_8452349_SNP [dm3] 2L_8452349_SNP [dm6]	A	T	4.562e^-4	0.959	UPSTREAM fu12 INTRON fu12
2L	9982761	2L_9982761_SNP [dm3] 2L_9982761_SNP [dm6]	G	A	4.562e^-4	0.959	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs
2R	16772319	2R_16772319_INS [dm3] 2R_20884814_INS [dm6]	G	GTG	4.562e^-4	0.959	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	818621	2L_818621_SNP [dm3] 2L_818621_SNP [dm6]	G	A	4.575e^-4	0.959	SYNONYMOUS_CODING CG3876 UPSTREAM CG15880 DOWNSTREAM Pex12	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	18531873	2R_18531873_SNP [dm3] 2R_22644368_SNP [dm6]	T	G	4.609e^-4	0.959	UPSTREAM Ugt58Fa DOWNSTREAM CG2852 INTERGENIC
3L	8354507	3L_8354507_DEL [dm3] 3L_8361407_DEL [dm6]	CATGTTCC	T	4.628e^-4	0.959	UPSTREAM Idh INTERGENIC
X	7494163	X_7494163_SNP [dm3] X_7600130_SNP [dm6]	A	T	4.631e^-4	0.959	INTERGENIC	regulatory region REDfly_CRMs
2L	1200263	2L_1200263_DEL [dm3] 2L_1200263_DEL [dm6]	CCACCAC	C	4.633e^-4	0.959	CODON_DELETION CG43349 UPSTREAM CG5139 & 1 other DOWNSTREAM CG43348
2R	1663989	2R_1663989_SNP [dm3] 2R_5776484_SNP [dm6]	G	A	4.646e^-4	0.959	NON_SYNONYMOUS_CODING ZnT41F
2L	1020680	2L_1020680_SNP [dm3] 2L_1020680_SNP [dm6]	G	C	4.653e^-4	0.959	INTRON IA-2
2L	3259769	2L_3259769_SNP [dm3] 2L_3259769_SNP [dm6]	T	C	4.658e^-4	0.959	INTERGENIC
2L	19698937	2L_19698937_SNP [dm3] 2L_19698937_SNP [dm6]	C	A	4.680e^-4	0.959	DOWNSTREAM scw INTRON Lar
X	14324326	X_14324326_SNP [dm3] X_14430293_SNP [dm6]	G	A	4.695e^-4	0.959	INTRON dpr8
2R	16704426	2R_16704426_SNP [dm3] 2R_20816921_SNP [dm6]	A	G	4.713e^-4	0.959	INTERGENIC
2R	16704441	2R_16704441_SNP [dm3] 2R_20816936_SNP [dm6]	A	T	4.713e^-4	0.959	INTERGENIC
2L	12668915	2L_12668915_SNP [dm3] 2L_12668915_SNP [dm6]	G	T	4.722e^-4	0.959	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16706228	2R_16706228_SNP [dm3] 2R_20818723_SNP [dm6]	G	T	4.722e^-4	0.959	INTERGENIC
2R	12968500	2R_12968500_SNP [dm3] 2R_17080995_SNP [dm6]	A	T	4.737e^-4	0.959	INTRON CG30460
2R	12968503	2R_12968503_SNP [dm3] 2R_17080998_SNP [dm6]	T	A	4.737e^-4	0.959	INTRON CG30460
2R	12968515	2R_12968515_SNP [dm3] 2R_17081010_SNP [dm6]	A	G	4.737e^-4	0.959	INTRON CG30460
2R	12968528	2R_12968528_SNP [dm3] 2R_17081023_SNP [dm6]	T	C	4.737e^-4	0.959	INTRON CG30460
2L	19696478	2L_19696478_SNP [dm3] 2L_19696478_SNP [dm6]	T	G	4.742e^-4	0.959	INTRON Lar
3L	16341560	3L_16341560_SNP [dm3] 3L_16348460_SNP [dm6]	G	A	4.774e^-4	0.959	SYNONYMOUS_CODING mRpS34 DOWNSTREAM CG33257 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	2147048	3L_2147048_SNP [dm3] 3L_2147048_SNP [dm6]	T	C	4.781e^-4	0.959	INTRON zormin
3R	23008074	3R_23008074_SNP [dm3] 3R_27182352_SNP [dm6]	C	T	4.787e^-4	0.959	INTRON Ser
3L	18932346	3L_18932346_SNP [dm3] 3L_18939246_SNP [dm6]	C	A	4.815e^-4	0.959	INTRON CG32204
2R	12971597	2R_12971597_INS [dm3] 2R_17084092_INS [dm6]	A	AC	4.834e^-4	0.959	INTRON CG30460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19997800	X_19997800_SNP [dm3] X_20103767_SNP [dm6]	C	T	4.834e^-4	0.959	INTERGENIC
2R	18223399	2R_18223399_SNP [dm3] 2R_22335894_SNP [dm6]	G	A	4.853e^-4	0.959	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3300205	2L_3300205_SNP [dm3] 2L_3300205_SNP [dm6]	C	G	4.862e^-4	0.959	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3176003	3L_3176003_SNP [dm3] 3L_3176003_SNP [dm6]	T	G	4.867e^-4	0.959	SYNONYMOUS_CODING CG14964	TF binding site mE1_TFBS_chinmo
2L	10429281	2L_10429281_SNP [dm3] 2L_10429281_SNP [dm6]	C	T	4.874e^-4	0.959	SYNONYMOUS_CODING CG5188 DOWNSTREAM KdelR & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	16697828	2R_16697828_SNP [dm3] 2R_20810323_SNP [dm6]	G	A	4.897e^-4	0.959	INTERGENIC
2R	16697840	2R_16697840_SNP [dm3] 2R_20810335_SNP [dm6]	C	A	4.897e^-4	0.959	INTERGENIC
X	3256041	X_3256041_SNP [dm3] X_3362008_SNP [dm6]	A	G	4.921e^-4	0.959	INTERGENIC
X	3256050	X_3256050_SNP [dm3] X_3362017_SNP [dm6]	A	G	4.921e^-4	0.959	INTERGENIC
3L	3011365	3L_3011365_SNP [dm3] 3L_3011365_SNP [dm6]	A	T	4.925e^-4	0.959	UTR_3_PRIME FMRFaR
X	8208525	X_8208525_SNP [dm3] X_8314492_SNP [dm6]	G	C	4.931e^-4	0.959	INTRON nAChRalpha3
2L	16705946	2L_16705946_SNP [dm3] 2L_16705946_SNP [dm6]	C	A	4.946e^-4	0.959	INTRON CG31808
2L	16450299	2L_16450299_SNP [dm3] 2L_16450299_SNP [dm6]	G	T	4.985e^-4	0.959	SYNONYMOUS_CODING Idgf2 UPSTREAM Idgf3
X	14570942	X_14570942_SNP [dm3] X_14676909_SNP [dm6]	A	C	5.008e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16084390	2L_16084390_SNP [dm3] 2L_16084390_SNP [dm6]	T	C	5.018e^-4	0.959	INTERGENIC
3L	16084771	3L_16084771_SNP [dm3] 3L_16091671_SNP [dm6]	A	G	5.025e^-4	0.959	SYNONYMOUS_CODING ClC-c
2L	1111538	2L_1111538_SNP [dm3] 2L_1111538_SNP [dm6]	G	A	5.029e^-4	0.959	SYNONYMOUS_CODING CG14339
2L	1177222	2L_1177222_SNP [dm3] 2L_1177222_SNP [dm6]	A	G	5.029e^-4	0.959	UPSTREAM CG4896 INTRON CG4887	TF binding site BDTNP1_TFBS_dl
3L	7573245	3L_7573245_SNP [dm3] 3L_7580145_SNP [dm6]	T	A	5.066e^-4	0.959	INTERGENIC
X	20885555	X_20885555_SNP [dm3] X_21014528_SNP [dm6]	A	T	5.113e^-4	0.959	INTERGENIC
2L	12133535	2L_12133535_SNP [dm3] 2L_12133535_SNP [dm6]	G	A	5.116e^-4	0.959	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12133536	2L_12133536_SNP [dm3] 2L_12133536_SNP [dm6]	G	A	5.116e^-4	0.959	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12133538	2L_12133538_SNP [dm3] 2L_12133538_SNP [dm6]	C	T	5.116e^-4	0.959	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12133541	2L_12133541_SNP [dm3] 2L_12133541_SNP [dm6]	C	T	5.116e^-4	0.959	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12133554	2L_12133554_SNP [dm3] 2L_12133554_SNP [dm6]	G	C	5.116e^-4	0.959	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12133563	2L_12133563_INS [dm3] 2L_12133563_INS [dm6]	T	TCATATCTTATTT...	5.116e^-4	0.959	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12133577	2L_12133577_SNP [dm3] 2L_12133577_SNP [dm6]	A	C	5.116e^-4	0.959	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12133633	2L_12133633_SNP [dm3] 2L_12133633_SNP [dm6]	G	A	5.116e^-4	0.959	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12133760	2L_12133760_SNP [dm3] 2L_12133760_SNP [dm6]	G	A	5.116e^-4	0.959	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12133869	2L_12133869_SNP [dm3] 2L_12133869_SNP [dm6]	T	C	5.116e^-4	0.959	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12133918	2L_12133918_DEL [dm3] 2L_12133918_DEL [dm6]	CATTGTGTC	C	5.116e^-4	0.959	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12133994	2L_12133994_SNP [dm3] 2L_12133994_SNP [dm6]	C	T	5.116e^-4	0.959	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12134104	2L_12134104_SNP [dm3] 2L_12134104_SNP [dm6]	A	C	5.116e^-4	0.959	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16963756	2L_16963756_SNP [dm3] 2L_16963756_SNP [dm6]	T	C	5.116e^-4	0.959	INTERGENIC
2L	3524737	2L_3524737_SNP [dm3] 2L_3524737_SNP [dm6]	A	T	5.116e^-4	0.959	UPSTREAM Sr-CIV & 1 other INTERGENIC
2L	4221892	2L_4221892_SNP [dm3] 2L_4221892_SNP [dm6]	T	C	5.116e^-4	0.959	UPSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	7920273	2L_7920273_SNP [dm3] 2L_7920273_SNP [dm6]	G	A	5.116e^-4	0.959	INTRON Snoo
2L	8986721	2L_8986721_SNP [dm3] 2L_8986721_SNP [dm6]	G	A	5.116e^-4	0.959	SYNONYMOUS_CODING rost
2R	16767375	2R_16767375_SNP [dm3] 2R_20879870_SNP [dm6]	T	C	5.116e^-4	0.959	UPSTREAM Cib2 DOWNSTREAM Ipk1 INTERGENIC
2R	2955936	2R_2955936_SNP [dm3] 2R_7068431_SNP [dm6]	C	A	5.116e^-4	0.959	UPSTREAM CG12836 INTRON CG12836	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9090515	2R_9090515_DEL [dm3] 2R_13203010_DEL [dm6]	TT	T	5.116e^-4	0.959	SPLICE_SITE_REGION lat & 1 other DOWNSTREAM Aats-val INTRON lat & 1 other	TF binding site mE1_TFBS_cad
2L	7514642	2L_7514642_SNP [dm3] 2L_7514642_SNP [dm6]	C	T	5.120e^-4	0.959	INTRON RapGAP1	TF binding site mE1_TFBS_cad
2L	7514938	2L_7514938_SNP [dm3] 2L_7514938_SNP [dm6]	C	T	5.120e^-4	0.959	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
2L	7515044	2L_7515044_DEL [dm3] 2L_7515044_DEL [dm6]	AA	A	5.120e^-4	0.959	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7515093	2L_7515093_SNP [dm3] 2L_7515093_SNP [dm6]	G	A	5.120e^-4	0.959	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7515506	2L_7515506_SNP [dm3] 2L_7515506_SNP [dm6]	C	T	5.120e^-4	0.959	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
2L	7515558	2L_7515558_SNP [dm3] 2L_7515558_SNP [dm6]	T	G	5.120e^-4	0.959	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
2L	7515843	2L_7515843_SNP [dm3] 2L_7515843_SNP [dm6]	G	A	5.120e^-4	0.959	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D
2L	7516089	2L_7516089_SNP [dm3] 2L_7516089_SNP [dm6]	A	T	5.120e^-4	0.959	INTRON RapGAP1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7517234	2L_7517234_SNP [dm3] 2L_7517234_SNP [dm6]	T	C	5.120e^-4	0.959	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7517281	2L_7517281_SNP [dm3] 2L_7517281_SNP [dm6]	A	G	5.120e^-4	0.959	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7521752	2L_7521752_SNP [dm3] 2L_7521752_SNP [dm6]	T	A	5.120e^-4	0.959	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	16700960	2R_16700960_SNP [dm3] 2R_20813455_SNP [dm6]	C	A	5.123e^-4	0.959	INTERGENIC
2R	16700962	2R_16700962_SNP [dm3] 2R_20813457_SNP [dm6]	G	A	5.123e^-4	0.959	INTERGENIC
3R	13850827	3R_13850827_SNP [dm3] 3R_18025105_SNP [dm6]	C	T	5.131e^-4	0.959	SYNONYMOUS_CODING CG7794	TF binding site mE1_TFBS_cad
3R	6958855	3R_6958855_SNP [dm3] 3R_11133133_SNP [dm6]	T	G	5.150e^-4	0.959	INTERGENIC
2L	1133655	2L_1133655_SNP [dm3] 2L_1133655_SNP [dm6]	C	G	5.156e^-4	0.959	NON_SYNONYMOUS_CODING Iris	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5321443	2L_5321443_SNP [dm3] 2L_5321443_SNP [dm6]	T	A	5.156e^-4	0.959	SYNONYMOUS_CODING Ncoa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8633112	2L_8633112_SNP [dm3] 2L_8633112_SNP [dm6]	C	T	5.173e^-4	0.959	INTRON Sema-1a
X	21437471	X_21437471_SNP [dm3] X_21566444_SNP [dm6]	T	C	5.181e^-4	0.959	INTERGENIC
2R	19578160	2R_19578160_SNP [dm3] 2R_23690637_SNP [dm6]	T	A	5.185e^-4	0.959	UTR_3_PRIME Pal2 & 1 other DOWNSTREAM CG30183 & 1 other
2R	19578162	2R_19578162_SNP [dm3] 2R_23690639_SNP [dm6]	T	C	5.185e^-4	0.959	UTR_3_PRIME Pal2 & 1 other DOWNSTREAM CG30183 & 1 other
3R	21755258	3R_21755258_SNP [dm3] 3R_25929536_SNP [dm6]	G	T	5.185e^-4	0.959	INTRON CCAP-R
3L	1571702	3L_1571702_SNP [dm3] 3L_1571702_SNP [dm6]	A	T	5.193e^-4	0.959	UPSTREAM CG12004 INTRON CG12004
2L	12134290	2L_12134290_SNP [dm3] 2L_12134290_SNP [dm6]	T	G	5.194e^-4	0.959	UPSTREAM rho-6 INTERGENIC
3L	14975396	3L_14975396_SNP [dm3] 3L_14982296_SNP [dm6]	G	A	5.198e^-4	0.959	NON_SYNONYMOUS_CODING CG3349 UPSTREAM CG5114
3L	3302724	3L_3302724_SNP [dm3] 3L_3302724_SNP [dm6]	T	A	5.198e^-4	0.959	UPSTREAM CG14968 & 1 other INTRON CG14968
2L	565858	2L_565858_SNP [dm3] 2L_565858_SNP [dm6]	T	C	5.226e^-4	0.959	SYNONYMOUS_CODING CG2794 DOWNSTREAM Nle	TF binding site mE1_TFBS_sens
3R	26585886	3R_26585886_SNP [dm3] 3R_30760164_SNP [dm6]	C	T	5.248e^-4	0.959	INTERGENIC
3R	26585918	3R_26585918_SNP [dm3] 3R_30760196_SNP [dm6]	A	T	5.248e^-4	0.959	INTERGENIC
3L	14229549	3L_14229549_SNP [dm3] 3L_14236449_SNP [dm6]	T	C	5.289e^-4	0.959	UPSTREAM CG7906 & 1 other INTERGENIC
3L	12310957	3L_12310957_SNP [dm3] 3L_12317857_SNP [dm6]	C	T	5.297e^-4	0.959	INTERGENIC
3L	3046249	3L_3046249_SNP [dm3] 3L_3046249_SNP [dm6]	T	C	5.297e^-4	0.959	UPSTREAM Sk2 INTRON scramb2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	3046252	3L_3046252_SNP [dm3] 3L_3046252_SNP [dm6]	G	T	5.297e^-4	0.959	UPSTREAM Sk2 INTRON scramb2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	3047027	3L_3047027_SNP [dm3] 3L_3047027_SNP [dm6]	C	T	5.297e^-4	0.959	UPSTREAM Sk2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	19534996	3L_19534996_SNP [dm3] 3L_19541896_SNP [dm6]	C	A	5.329e^-4	0.959	SYNONYMOUS_CODING CG9279	TF binding site mE1_TFBS_cad
2L	12088940	2L_12088940_INS [dm3] 2L_12088940_INS [dm6]	T	TACAATT	5.332e^-4	0.959	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10308137	X_10308137_SNP [dm3] X_10414104_SNP [dm6]	A	G	5.349e^-4	0.959	INTRON CG32683
2L	19118896	2L_19118896_SNP [dm3] 2L_19118896_SNP [dm6]	C	T	5.363e^-4	0.959	INTRON Ddc	regulatory region REDfly_CRMs
2L	19118914	2L_19118914_SNP [dm3] 2L_19118914_SNP [dm6]	T	G	5.363e^-4	0.959	INTRON Ddc	regulatory region REDfly_CRMs
2L	19118919	2L_19118919_INS [dm3] 2L_19118919_INS [dm6]	A	ACAATA	5.363e^-4	0.959	INTRON Ddc	regulatory region REDfly_CRMs
2L	19118942	2L_19118942_SNP [dm3] 2L_19118942_SNP [dm6]	T	G	5.363e^-4	0.959	INTRON Ddc	regulatory region REDfly_CRMs
2R	12187839	2R_12187839_DEL [dm3] 2R_16300334_DEL [dm6]	AAA	A	5.373e^-4	0.959	EXON CR45232
2R	16920474	2R_16920474_SNP [dm3] 2R_21032969_SNP [dm6]	A	G	5.373e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6346777	X_6346777_SNP [dm3] X_6452744_SNP [dm6]	T	A	5.373e^-4	0.959	INTRON CG42340
3L	855962	3L_855962_SNP [dm3] 3L_855962_SNP [dm6]	C	G	5.442e^-4	0.959	INTRON dpr20
3L	855963	3L_855963_SNP [dm3] 3L_855963_SNP [dm6]	A	C	5.442e^-4	0.959	INTRON dpr20
3L	855969	3L_855969_SNP [dm3] 3L_855969_SNP [dm6]	A	C	5.442e^-4	0.959	INTRON dpr20
2R	16056801	2R_16056801_SNP [dm3] 2R_20169296_SNP [dm6]	A	G	5.474e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26372609	3R_26372609_SNP [dm3] 3R_30546887_SNP [dm6]	T	A	5.474e^-4	0.959	UPSTREAM tmod INTRON tmod
2L	20846598	2L_20846598_SNP [dm3] 2L_20846598_SNP [dm6]	T	A	5.498e^-4	0.959	INTRON CG31676
2L	1111988	2L_1111988_SNP [dm3] 2L_1111988_SNP [dm6]	T	C	5.523e^-4	0.959	UPSTREAM CG14340 INTRON CG14339	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11184336	2L_11184336_SNP [dm3] 2L_11184336_SNP [dm6]	C	G	5.523e^-4	0.959	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	11184388	2L_11184388_SNP [dm3] 2L_11184388_SNP [dm6]	T	G	5.523e^-4	0.959	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	11184408	2L_11184408_SNP [dm3] 2L_11184408_SNP [dm6]	C	T	5.523e^-4	0.959	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	11184409	2L_11184409_SNP [dm3] 2L_11184409_SNP [dm6]	G	A	5.523e^-4	0.959	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	11514832	2L_11514832_SNP [dm3] 2L_11514832_SNP [dm6]	G	A	5.523e^-4	0.959	SYNONYMOUS_CODING CG6509	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12667199	2L_12667199_SNP [dm3] 2L_12667199_SNP [dm6]	T	C	5.523e^-4	0.959	DOWNSTREAM CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	12667205	2L_12667205_SNP [dm3] 2L_12667205_SNP [dm6]	A	G	5.523e^-4	0.959	DOWNSTREAM CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	12668399	2L_12668399_SNP [dm3] 2L_12668399_SNP [dm6]	G	A	5.523e^-4	0.959	SYNONYMOUS_CODING CG15485 INTRON pdm2
2L	12668946	2L_12668946_SNP [dm3] 2L_12668946_SNP [dm6]	A	G	5.523e^-4	0.959	NON_SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12668972	2L_12668972_SNP [dm3] 2L_12668972_SNP [dm6]	G	A	5.523e^-4	0.959	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1300626	2L_1300626_SNP [dm3] 2L_1300626_SNP [dm6]	T	A	5.523e^-4	0.959	INTERGENIC
2L	15594335	2L_15594335_SNP [dm3] 2L_15594335_SNP [dm6]	A	G	5.523e^-4	0.959	INTERGENIC
2L	19290183	2L_19290183_SNP [dm3] 2L_19290183_SNP [dm6]	A	G	5.523e^-4	0.959	INTERGENIC
2L	21017213	2L_21017213_SNP [dm3] 2L_21017213_SNP [dm6]	T	A	5.523e^-4	0.959	INTRON CG42238
2L	21866041	2L_21866041_SNP [dm3] 2L_21866041_SNP [dm6]	A	G	5.523e^-4	0.959	DOWNSTREAM CR44919 INTRON CR44917 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3757300	2L_3757300_SNP [dm3] 2L_3757300_SNP [dm6]	C	G	5.523e^-4	0.959	UTR_5_PRIME CG43707
2L	4221899	2L_4221899_SNP [dm3] 2L_4221899_SNP [dm6]	G	C	5.523e^-4	0.959	UPSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	4222154	2L_4222154_SNP [dm3] 2L_4222154_SNP [dm6]	T	A	5.523e^-4	0.959	UPSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	4345797	2L_4345797_SNP [dm3] 2L_4345797_SNP [dm6]	A	G	5.523e^-4	0.959	DOWNSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	4345874	2L_4345874_SNP [dm3] 2L_4345874_SNP [dm6]	G	A	5.523e^-4	0.959	DOWNSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	5159125	2L_5159125_SNP [dm3] 2L_5159125_SNP [dm6]	A	T	5.523e^-4	0.959	NON_SYNONYMOUS_CODING Msp300 DOWNSTREAM Msp300 INTRON Msp300
2L	5838508	2L_5838508_DEL [dm3] 2L_5838508_DEL [dm6]	ATGCGA	A	5.523e^-4	0.959	INTRON TrissinR
2L	6831094	2L_6831094_SNP [dm3] 2L_6831094_SNP [dm6]	T	A	5.523e^-4	0.959	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6831110	2L_6831110_SNP [dm3] 2L_6831110_SNP [dm6]	T	A	5.523e^-4	0.959	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6831163	2L_6831163_SNP [dm3] 2L_6831163_SNP [dm6]	A	G	5.523e^-4	0.959	SPLICE_SITE_REGION sens-2 INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7222168	2L_7222168_SNP [dm3] 2L_7222168_SNP [dm6]	T	C	5.523e^-4	0.959	SYNONYMOUS_CODING ico	TF binding site mE1_TFBS_sens
2R	10816116	2R_10816116_DEL [dm3] 2R_14928611_DEL [dm6]	TACAT	T	5.523e^-4	0.959	UPSTREAM CG10249 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2R	10816144	2R_10816144_SNP [dm3] 2R_14928639_SNP [dm6]	T	C	5.523e^-4	0.959	UPSTREAM CG10249 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2R	10816171	2R_10816171_SNP [dm3] 2R_14928666_SNP [dm6]	A	T	5.523e^-4	0.959	UPSTREAM CG10249 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2R	10816219	2R_10816219_SNP [dm3] 2R_14928714_SNP [dm6]	A	G	5.523e^-4	0.959	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10816225	2R_10816225_SNP [dm3] 2R_14928720_SNP [dm6]	C	T	5.523e^-4	0.959	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10816268	2R_10816268_SNP [dm3] 2R_14928763_SNP [dm6]	T	A	5.523e^-4	0.959	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	10816269	2R_10816269_DEL [dm3] 2R_14928764_DEL [dm6]	ATTTTGATATATATGATTT...	A	5.523e^-4	0.959	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	12814569	2R_12814569_SNP [dm3] 2R_16927064_SNP [dm6]	C	T	5.523e^-4	0.959	INTRON Pkc53E
2R	13417626	2R_13417626_SNP [dm3] 2R_17530121_SNP [dm6]	C	T	5.523e^-4	0.959	SYNONYMOUS_CODING Patronin INTRON Patronin
2R	13815947	2R_13815947_SNP [dm3] 2R_17928442_SNP [dm6]	A	C	5.523e^-4	0.959	INTERGENIC
2R	15083605	2R_15083605_SNP [dm3] 2R_19196100_SNP [dm6]	G	T	5.523e^-4	0.959	INTRON hppy
2R	16515353	2R_16515353_SNP [dm3] 2R_20627848_SNP [dm6]	C	A	5.523e^-4	0.959	NON_SYNONYMOUS_CODING CG16742 DOWNSTREAM Rcd6
2R	16685314	2R_16685314_SNP [dm3] 2R_20797809_SNP [dm6]	C	A	5.523e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16705987	2R_16705987_SNP [dm3] 2R_20818482_SNP [dm6]	C	A	5.523e^-4	0.959	INTERGENIC
2R	16767235	2R_16767235_SNP [dm3] 2R_20879730_SNP [dm6]	A	C	5.523e^-4	0.959	UPSTREAM Cib2 DOWNSTREAM Ipk1 INTERGENIC
2R	16767369	2R_16767369_SNP [dm3] 2R_20879864_SNP [dm6]	G	A	5.523e^-4	0.959	UPSTREAM Cib2 DOWNSTREAM Ipk1 INTERGENIC
2R	16767543	2R_16767543_SNP [dm3] 2R_20880038_SNP [dm6]	G	A	5.523e^-4	0.959	UTR_5_PRIME Cib2 DOWNSTREAM Ipk1
2R	16768742	2R_16768742_SNP [dm3] 2R_20881237_SNP [dm6]	C	T	5.523e^-4	0.959	INTRON Cib2
2R	16772405	2R_16772405_SNP [dm3] 2R_20884900_SNP [dm6]	A	C	5.523e^-4	0.959	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	16778305	2R_16778305_SNP [dm3] 2R_20890800_SNP [dm6]	T	G	5.523e^-4	0.959	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	16778675	2R_16778675_SNP [dm3] 2R_20891170_SNP [dm6]	G	T	5.523e^-4	0.959	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17239887	2R_17239887_SNP [dm3] 2R_21352382_SNP [dm6]	T	A	5.523e^-4	0.959	INTERGENIC
2R	17244417	2R_17244417_SNP [dm3] 2R_21356912_SNP [dm6]	G	C	5.523e^-4	0.959	SYNONYMOUS_CODING cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17854813	2R_17854813_SNP [dm3] 2R_21967308_SNP [dm6]	C	T	5.523e^-4	0.959	INTRON ppk9
2R	17923876	2R_17923876_SNP [dm3] 2R_22036371_SNP [dm6]	A	G	5.523e^-4	0.959	DOWNSTREAM CG9308 INTRON CG34370
2R	17926402	2R_17926402_DEL [dm3] 2R_22038897_DEL [dm6]	TAT	A	5.523e^-4	0.959	INTRON CG34370
2R	19367998	2R_19367998_SNP [dm3] 2R_23480475_SNP [dm6]	A	T	5.523e^-4	0.959	INTRON CG43795
2R	19500363	2R_19500363_SNP [dm3] 2R_23612840_SNP [dm6]	G	A	5.523e^-4	0.959	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	20185523	2R_20185523_SNP [dm3] 2R_24298000_SNP [dm6]	G	A	5.523e^-4	0.959	UTR_3_PRIME CG3394	TF binding site mE1_TFBS_chinmo
2R	20191181	2R_20191181_SNP [dm3] 2R_24303658_SNP [dm6]	T	G	5.523e^-4	0.959	INTERGENIC	regulatory region REDfly_CRMs
2R	20191205	2R_20191205_SNP [dm3] 2R_24303682_SNP [dm6]	T	A	5.523e^-4	0.959	INTERGENIC	regulatory region REDfly_CRMs
2R	20191309	2R_20191309_SNP [dm3] 2R_24303786_SNP [dm6]	A	G	5.523e^-4	0.959	INTERGENIC	regulatory region REDfly_CRMs
2R	20191400	2R_20191400_SNP [dm3] 2R_24303877_SNP [dm6]	G	A	5.523e^-4	0.959	INTERGENIC	regulatory region REDfly_CRMs
2R	20191952	2R_20191952_SNP [dm3] 2R_24304429_SNP [dm6]	C	T	5.523e^-4	0.959	INTERGENIC	regulatory region REDfly_CRMs
2R	3503108	2R_3503108_INS [dm3] 2R_7615603_INS [dm6]	C	CTGTG	5.523e^-4	0.959	INTRON CG1358
2R	3503142	2R_3503142_SNP [dm3] 2R_7615637_SNP [dm6]	A	G	5.523e^-4	0.959	INTRON CG1358
2R	6754158	2R_6754158_SNP [dm3] 2R_10866653_SNP [dm6]	A	G	5.523e^-4	0.959	INTRON CG30015
2R	8446677	2R_8446677_SNP [dm3] 2R_12559172_SNP [dm6]	C	T	5.523e^-4	0.959	INTRON fra
2R	8453085	2R_8453085_SNP [dm3] 2R_12565580_SNP [dm6]	C	T	5.523e^-4	0.959	UPSTREAM CG33775 & 1 other INTERGENIC
2R	8480075	2R_8480075_SNP [dm3] 2R_12592570_SNP [dm6]	T	C	5.523e^-4	0.959	UTR_5_PRIME Sin3A DOWNSTREAM CR45279 INTRON Sin3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8480461	2R_8480461_SNP [dm3] 2R_12592956_SNP [dm6]	C	T	5.523e^-4	0.959	UPSTREAM Amph & 1 other DOWNSTREAM CR45279 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9136664	2R_9136664_SNP [dm3] 2R_13249159_SNP [dm6]	T	A	5.523e^-4	0.959	SYNONYMOUS_CODING CG4712 DOWNSTREAM Mp20
2R	9136726	2R_9136726_SNP [dm3] 2R_13249221_SNP [dm6]	T	G	5.523e^-4	0.959	NON_SYNONYMOUS_CODING CG4712 DOWNSTREAM Mp20
2R	9157188	2R_9157188_SNP [dm3] 2R_13269683_SNP [dm6]	A	G	5.523e^-4	0.959	INTRON Dh31-R
2R	9157194	2R_9157194_SNP [dm3] 2R_13269689_SNP [dm6]	G	A	5.523e^-4	0.959	INTRON Dh31-R
2R	9569451	2R_9569451_SNP [dm3] 2R_13681946_SNP [dm6]	T	C	5.523e^-4	0.959	INTRON fas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9569455	2R_9569455_SNP [dm3] 2R_13681950_SNP [dm6]	A	G	5.523e^-4	0.959	INTRON fas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12884397	3L_12884397_SNP [dm3] 3L_12891297_SNP [dm6]	C	T	5.523e^-4	0.959	NON_SYNONYMOUS_CODING CG43894 DOWNSTREAM CG43894 INTRON CG43894
3L	3535731	3L_3535731_SNP [dm3] 3L_3535731_SNP [dm6]	G	C	5.523e^-4	0.959	INTRON Eip63E
3L	3535754	3L_3535754_SNP [dm3] 3L_3535754_SNP [dm6]	T	G	5.523e^-4	0.959	INTRON Eip63E
3L	8838651	3L_8838651_SNP [dm3] 3L_8845551_SNP [dm6]	A	G	5.523e^-4	0.959	INTRON dally
3R	17385928	3R_17385928_SNP [dm3] 3R_21560206_SNP [dm6]	A	C	5.523e^-4	0.959	INTERGENIC
X	15543605	X_15543605_SNP [dm3] X_15649572_SNP [dm6]	C	A	5.523e^-4	0.959	INTERGENIC
X	15543615	X_15543615_DEL [dm3] X_15649582_DEL [dm6]	AATA	C	5.523e^-4	0.959	INTERGENIC
X	20160546	X_20160546_SNP [dm3] X_20289519_SNP [dm6]	T	G	5.523e^-4	0.959	INTERGENIC
X	20160555	X_20160555_SNP [dm3] X_20289528_SNP [dm6]	C	T	5.523e^-4	0.959	INTERGENIC
X	20237272	X_20237272_SNP [dm3] X_20366245_SNP [dm6]	C	A	5.523e^-4	0.959	INTERGENIC
X	7482962	X_7482962_INS [dm3] X_7588929_INS [dm6]	G	GGAG	5.523e^-4	0.959	INTERGENIC	regulatory region REDfly_CRMs
X	7482991	X_7482991_INS [dm3] X_7588958_INS [dm6]	A	AA	5.523e^-4	0.959	INTERGENIC	regulatory region REDfly_CRMs
2L	9678909	2L_9678909_SNP [dm3] 2L_9678909_SNP [dm6]	T	C	5.545e^-4	0.959	INTERGENIC
2R	9412127	2R_9412127_SNP [dm3] 2R_13524622_SNP [dm6]	A	G	5.551e^-4	0.959	UPSTREAM CG13332 INTRON Vmat
X	3081645	X_3081645_SNP [dm3] X_3187612_SNP [dm6]	C	A	5.554e^-4	0.959	INTRON dnc
2L	2526184	2L_2526184_SNP [dm3] 2L_2526184_SNP [dm6]	T	G	5.556e^-4	0.959	INTERGENIC
3R	26576194	3R_26576194_SNP [dm3] 3R_30750472_SNP [dm6]	C	T	5.600e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14740040	3R_14740040_SNP [dm3] 3R_18914318_SNP [dm6]	C	T	5.601e^-4	0.959	UPSTREAM Xrp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	3531878	2R_3531878_SNP [dm3] 2R_7644373_SNP [dm6]	G	T	5.602e^-4	0.959	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
2L	1111193	2L_1111193_SNP [dm3] 2L_1111193_SNP [dm6]	T	G	5.603e^-4	0.959	INTRON CG14339
2R	18235192	2R_18235192_INS [dm3] 2R_22347687_INS [dm6]	G	ACA	5.614e^-4	0.959	UPSTREAM CG11298 INTRON Liprin-gamma
3R	3002511	3R_3002511_SNP [dm3] 3R_7176789_SNP [dm6]	T	G	5.630e^-4	0.959	INTRON sas
3L	12423014	3L_12423014_SNP [dm3] 3L_12429914_SNP [dm6]	G	A	5.648e^-4	0.959	INTRON toe
3L	1296728	3L_1296728_SNP [dm3] 3L_1296728_SNP [dm6]	A	G	5.648e^-4	0.959	SYNONYMOUS_CODING Rabex-5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1300827	3L_1300827_SNP [dm3] 3L_1300827_SNP [dm6]	A	T	5.648e^-4	0.959	DOWNSTREAM Rac1 & 1 other INTERGENIC
3L	1301308	3L_1301308_SNP [dm3] 3L_1301308_SNP [dm6]	T	A	5.648e^-4	0.959	UTR_3_PRIME Rac1 DOWNSTREAM scf
X	5229611	X_5229611_SNP [dm3] X_5335578_SNP [dm6]	C	T	5.648e^-4	0.959	INTERGENIC
X	5229614	X_5229614_SNP [dm3] X_5335581_SNP [dm6]	C	T	5.648e^-4	0.959	INTERGENIC
3L	7450702	3L_7450702_SNP [dm3] 3L_7457602_SNP [dm6]	C	T	5.678e^-4	0.959	SYNONYMOUS_CODING ppk26
3L	7450708	3L_7450708_SNP [dm3] 3L_7457608_SNP [dm6]	C	G	5.678e^-4	0.959	SYNONYMOUS_CODING ppk26
2L	1981578	2L_1981578_SNP [dm3] 2L_1981578_SNP [dm6]	G	A	5.704e^-4	0.959	NON_SYNONYMOUS_CODING CG15362 UPSTREAM CG15356 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
2L	1981673	2L_1981673_SNP [dm3] 2L_1981673_SNP [dm6]	C	G	5.704e^-4	0.959	NON_SYNONYMOUS_CODING CG15362 UPSTREAM CG15356 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
2L	3524811	2L_3524811_SNP [dm3] 2L_3524811_SNP [dm6]	A	T	5.704e^-4	0.959	UPSTREAM Sr-CIV & 1 other INTERGENIC
2L	3524823	2L_3524823_SNP [dm3] 2L_3524823_SNP [dm6]	A	C	5.704e^-4	0.959	UPSTREAM Sr-CIV & 1 other INTERGENIC
2L	3524825	2L_3524825_SNP [dm3] 2L_3524825_SNP [dm6]	T	A	5.704e^-4	0.959	UPSTREAM Sr-CIV & 1 other INTERGENIC
2L	7518247	2L_7518247_SNP [dm3] 2L_7518247_SNP [dm6]	G	A	5.704e^-4	0.959	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	7518269	2L_7518269_SNP [dm3] 2L_7518269_SNP [dm6]	C	T	5.704e^-4	0.959	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7518336	2L_7518336_SNP [dm3] 2L_7518336_SNP [dm6]	A	C	5.704e^-4	0.959	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7522417	2L_7522417_INS [dm3] 2L_7522417_INS [dm6]	T	TAT	5.704e^-4	0.959	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	10315761	2R_10315761_SNP [dm3] 2R_14428256_SNP [dm6]	A	G	5.704e^-4	0.959	SYNONYMOUS_CODING phyl	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_sens
2R	17239616	2R_17239616_SNP [dm3] 2R_21352111_SNP [dm6]	G	C	5.704e^-4	0.959	INTERGENIC
2R	2950581	2R_2950581_SNP [dm3] 2R_7063076_SNP [dm6]	G	T	5.704e^-4	0.959	SYNONYMOUS_CODING Tsp42Eq	insulator Insulator_Class_II.mE01
2R	2950757	2R_2950757_SNP [dm3] 2R_7063252_SNP [dm6]	G	A	5.704e^-4	0.959	SYNONYMOUS_CODING Tsp42Eq
2R	6347511	2R_6347511_SNP [dm3] 2R_10460006_SNP [dm6]	C	G	5.704e^-4	0.959	INTRON Galphao
2R	6875335	2R_6875335_SNP [dm3] 2R_10987830_SNP [dm6]	C	G	5.704e^-4	0.959	INTRON luna
2R	7470793	2R_7470793_SNP [dm3] 2R_11583288_SNP [dm6]	A	T	5.704e^-4	0.959	SYNONYMOUS_CODING tou UPSTREAM tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	9135702	2R_9135702_SNP [dm3] 2R_13248197_SNP [dm6]	T	A	5.704e^-4	0.959	DOWNSTREAM Mp20 & 1 other INTRON Mp20
2R	9137219	2R_9137219_SNP [dm3] 2R_13249714_SNP [dm6]	A	G	5.704e^-4	0.959	DOWNSTREAM Mp20 INTRON CG4712
3L	5338960	3L_5338960_SNP [dm3] 3L_5345860_SNP [dm6]	A	G	5.704e^-4	0.959	SYNONYMOUS_CODING lama
3L	5385037	3L_5385037_DEL [dm3] 3L_5391937_DEL [dm6]	TC	T	5.704e^-4	0.959	INTERGENIC
3L	5385043	3L_5385043_SNP [dm3] 3L_5391943_SNP [dm6]	T	G	5.704e^-4	0.959	INTERGENIC
3L	5385081	3L_5385081_SNP [dm3] 3L_5391981_SNP [dm6]	T	C	5.704e^-4	0.959	INTERGENIC
X	14016316	X_14016316_SNP [dm3] X_14122283_SNP [dm6]	T	A	5.704e^-4	0.959	INTERGENIC
X	4124400	X_4124400_SNP [dm3] X_4230367_SNP [dm6]	A	G	5.704e^-4	0.959	INTERGENIC
2L	16865279	2L_16865279_SNP [dm3] 2L_16865279_SNP [dm6]	A	T	5.709e^-4	0.959	INTERGENIC
2L	16865302	2L_16865302_SNP [dm3] 2L_16865302_SNP [dm6]	T	G	5.709e^-4	0.959	INTERGENIC
2L	16865307	2L_16865307_SNP [dm3] 2L_16865307_SNP [dm6]	G	A	5.709e^-4	0.959	INTERGENIC
2L	5957940	2L_5957940_DEL [dm3] 2L_5957940_DEL [dm6]	TTT	T	5.709e^-4	0.959	DOWNSTREAM Vm26Ac & 1 other INTERGENIC
2L	5958153	2L_5958153_SNP [dm3] 2L_5958153_SNP [dm6]	G	T	5.709e^-4	0.959	NON_SYNONYMOUS_CODING Vm26Ac DOWNSTREAM Vm26Ab	TF binding site mE1_TFBS_cad
2L	5958170	2L_5958170_SNP [dm3] 2L_5958170_SNP [dm6]	A	G	5.709e^-4	0.959	NON_SYNONYMOUS_CODING Vm26Ac DOWNSTREAM Vm26Ab	TF binding site mE1_TFBS_cad
2L	5958226	2L_5958226_SNP [dm3] 2L_5958226_SNP [dm6]	T	A	5.709e^-4	0.959	SYNONYMOUS_CODING Vm26Ac DOWNSTREAM Vm26Ab	TF binding site mE1_TFBS_cad
2L	5958247	2L_5958247_SNP [dm3] 2L_5958247_SNP [dm6]	G	A	5.709e^-4	0.959	SYNONYMOUS_CODING Vm26Ac DOWNSTREAM Vm26Ab	TF binding site mE1_TFBS_cad
2L	5958304	2L_5958304_SNP [dm3] 2L_5958304_SNP [dm6]	G	A	5.709e^-4	0.959	SYNONYMOUS_CODING Vm26Ac DOWNSTREAM Vm26Ab	TF binding site mE1_TFBS_cad
2L	5958469	2L_5958469_INS [dm3] 2L_5958469_INS [dm6]	T	TGAT	5.709e^-4	0.959	CODON_INSERTION Vm26Ac DOWNSTREAM Vm26Ab	TF binding site mE1_TFBS_cad
2L	6095148	2L_6095148_SNP [dm3] 2L_6095148_SNP [dm6]	A	G	5.724e^-4	0.959	SYNONYMOUS_CODING Kr-h1 UTR_3_PRIME CG45075	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13970379	2L_13970379_DEL [dm3] 2L_13970379_DEL [dm6]	ATAATAAT	A	5.731e^-4	0.959	UPSTREAM NimB5 & 1 other INTRON NimB5
2L	13970388	2L_13970388_SNP [dm3] 2L_13970388_SNP [dm6]	A	T	5.731e^-4	0.959	UPSTREAM NimB5 & 1 other INTRON NimB5
2L	9011251	2L_9011251_SNP [dm3] 2L_9011251_SNP [dm6]	A	G	5.731e^-4	0.959	UTR_3_PRIME CG9568 UPSTREAM CG13102
3L	16488148	3L_16488148_SNP [dm3] 3L_16495048_SNP [dm6]	G	A	5.780e^-4	0.959	UTR_5_PRIME CG42514 INTRON CG33158 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	6401479	2L_6401479_SNP [dm3] 2L_6401479_SNP [dm6]	T	C	5.797e^-4	0.959	INTRON CG42368
3L	1300257	3L_1300257_SNP [dm3] 3L_1300257_SNP [dm6]	G	A	5.804e^-4	0.959	UTR_3_PRIME scf DOWNSTREAM Rac1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1300351	3L_1300351_SNP [dm3] 3L_1300351_SNP [dm6]	C	G	5.804e^-4	0.959	UTR_3_PRIME scf DOWNSTREAM Rac1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7456049	3L_7456049_SNP [dm3] 3L_7462949_SNP [dm6]	C	T	5.804e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11687059	3L_11687059_INS [dm3] 3L_11693959_INS [dm6]	T	TATATAGTAAATAAACTATA...	5.812e^-4	0.959	UTR_3_PRIME CG11652 DOWNSTREAM CR43887	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	18594840	3L_18594840_SNP [dm3] 3L_18601740_SNP [dm6]	A	G	5.822e^-4	0.959	SYNONYMOUS_CODING CG4174 UTR_3_PRIME CG13380
3L	19578395	3L_19578395_SNP [dm3] 3L_19585295_SNP [dm6]	C	T	5.834e^-4	0.959	UTR_3_PRIME CG9231 UPSTREAM Shal & 1 other	TF binding site BDTNP1_TFBS_dl
2R	14418848	2R_14418848_SNP [dm3] 2R_18531343_SNP [dm6]	A	G	5.845e^-4	0.959	INTRON CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	14420948	2R_14420948_SNP [dm3] 2R_18533443_SNP [dm6]	C	A	5.845e^-4	0.959	SYNONYMOUS_CODING CG10924	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14420963	2R_14420963_SNP [dm3] 2R_18533458_SNP [dm6]	A	G	5.845e^-4	0.959	SYNONYMOUS_CODING CG10924	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14421050	2R_14421050_SNP [dm3] 2R_18533545_SNP [dm6]	A	T	5.845e^-4	0.959	SYNONYMOUS_CODING CG10924	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14423411	2R_14423411_DEL [dm3] 2R_18535906_DEL [dm6]	AACAAGAGTGGC...	A	5.845e^-4	0.959	UPSTREAM Pepck & 1 other DOWNSTREAM CG10924 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16989113	3R_16989113_SNP [dm3] 3R_21163391_SNP [dm6]	A	G	5.853e^-4	0.959	UPSTREAM CG5810 INTRON SNF4Agamma
3R	16989117	3R_16989117_SNP [dm3] 3R_21163395_SNP [dm6]	A	T	5.853e^-4	0.959	UPSTREAM CG5810 INTRON SNF4Agamma
3R	25618122	3R_25618122_SNP [dm3] 3R_29792400_SNP [dm6]	A	G	5.853e^-4	0.959	SYNONYMOUS_CODING kay	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2506693	3R_2506693_SNP [dm3] 3R_6680971_SNP [dm6]	G	C	5.893e^-4	0.959	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2L	1998866	2L_1998866_SNP [dm3] 2L_1998866_SNP [dm6]	G	A	5.902e^-4	0.959	INTRON CG33543
2L	10945711	2L_10945711_SNP [dm3] 2L_10945711_SNP [dm6]	G	A	5.906e^-4	0.959	INTRON dpr2
2L	1988592	2L_1988592_SNP [dm3] 2L_1988592_SNP [dm6]	G	A	5.924e^-4	0.959	SYNONYMOUS_CODING Npc2a UPSTREAM Got2 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5390199	3L_5390199_SNP [dm3] 3L_5397099_SNP [dm6]	C	A	5.982e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15533479	2R_15533479_SNP [dm3] 2R_19645974_SNP [dm6]	C	G	5.989e^-4	0.959	DOWNSTREAM CG15905 INTERGENIC
2R	15534742	2R_15534742_SNP [dm3] 2R_19647237_SNP [dm6]	C	G	5.989e^-4	0.959	NON_SYNONYMOUS_CODING CG15905	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15535102	2R_15535102_SNP [dm3] 2R_19647597_SNP [dm6]	C	T	5.989e^-4	0.959	UTR_5_PRIME CG15905	TF binding site mE1_TFBS_cad
2R	15535132	2R_15535132_SNP [dm3] 2R_19647627_SNP [dm6]	C	T	5.989e^-4	0.959	UTR_5_PRIME CG15905	TF binding site mE1_TFBS_cad
2R	15535139	2R_15535139_SNP [dm3] 2R_19647634_SNP [dm6]	C	G	5.989e^-4	0.959	UTR_5_PRIME CG15905	TF binding site mE1_TFBS_cad
2R	15535313	2R_15535313_SNP [dm3] 2R_19647808_SNP [dm6]	T	G	5.989e^-4	0.959	UPSTREAM CG15905 INTERGENIC	TF binding site mE1_TFBS_cad
2R	15535337	2R_15535337_SNP [dm3] 2R_19647832_SNP [dm6]	G	T	5.989e^-4	0.959	UPSTREAM CG15905 INTERGENIC
2R	15536789	2R_15536789_SNP [dm3] 2R_19649284_SNP [dm6]	G	A	5.989e^-4	0.959	INTERGENIC
2R	17875683	2R_17875683_SNP [dm3] 2R_21988178_SNP [dm6]	G	A	5.989e^-4	0.959	UTR_3_PRIME CG34370	TF binding site mE1_TFBS_cad
2R	7479483	2R_7479483_SNP [dm3] 2R_11591978_SNP [dm6]	T	A	5.989e^-4	0.959	UPSTREAM snoRNA:Psi28S-1180 INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7480881	2R_7480881_SNP [dm3] 2R_11593376_SNP [dm6]	G	T	5.989e^-4	0.959	UPSTREAM tou INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7481336	2R_7481336_SNP [dm3] 2R_11593831_SNP [dm6]	A	T	5.989e^-4	0.959	UPSTREAM tou INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	7482127	2R_7482127_SNP [dm3] 2R_11594622_SNP [dm6]	T	C	5.989e^-4	0.959	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2R	7482149	2R_7482149_SNP [dm3] 2R_11594644_SNP [dm6]	G	T	5.989e^-4	0.959	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2R	7482188	2R_7482188_SNP [dm3] 2R_11594683_SNP [dm6]	T	A	5.989e^-4	0.959	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2R	7482191	2R_7482191_SNP [dm3] 2R_11594686_SNP [dm6]	G	C	5.989e^-4	0.959	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2R	7482220	2R_7482220_SNP [dm3] 2R_11594715_SNP [dm6]	T	A	5.989e^-4	0.959	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2R	7482262	2R_7482262_SNP [dm3] 2R_11594757_SNP [dm6]	C	G	5.989e^-4	0.959	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	7277304	3L_7277304_SNP [dm3] 3L_7284204_SNP [dm6]	C	T	5.989e^-4	0.959	INTRON unc-13-4A
X	618873	X_618873_SNP [dm3] X_724840_SNP [dm6]	C	T	5.989e^-4	0.959	INTRON sdk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7513737	2L_7513737_SNP [dm3] 2L_7513737_SNP [dm6]	C	T	6.003e^-4	0.959	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6500100	2R_6500100_DEL [dm3] 2R_10612595_DEL [dm6]	TCTCCTGC	AA	6.006e^-4	0.959	INTRON psq
3L	9620465	3L_9620465_SNP [dm3] 3L_9627365_SNP [dm6]	A	G	6.016e^-4	0.959	UTR_3_PRIME Or67b DOWNSTREAM CG3335
3L	9620469	3L_9620469_SNP [dm3] 3L_9627369_SNP [dm6]	G	T	6.016e^-4	0.959	UTR_3_PRIME Or67b DOWNSTREAM CG3335
X	14905624	X_14905624_DEL [dm3] X_15011591_DEL [dm6]	AAG	TC	6.023e^-4	0.959	INTRON hiw	TF binding site mE1_TFBS_chinmo
2R	16434808	2R_16434808_SNP [dm3] 2R_20547303_SNP [dm6]	T	C	6.034e^-4	0.959	NON_SYNONYMOUS_CODING CG30148 DOWNSTREAM Obp57e
3R	5654799	3R_5654799_SNP [dm3] 3R_9829077_SNP [dm6]	T	C	6.034e^-4	0.959	INTRON Teh1
3L	4112250	3L_4112250_SNP [dm3] 3L_4112250_SNP [dm6]	C	G	6.038e^-4	0.959	NON_SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14871518	2L_14871518_SNP [dm3] 2L_14871518_SNP [dm6]	T	C	6.054e^-4	0.959	INTRON CG4480
2R	15325767	2R_15325767_SNP [dm3] 2R_19438262_SNP [dm6]	G	A	6.072e^-4	0.959	SYNONYMOUS_CODING Spt5
3R	18988907	3R_18988907_SNP [dm3] 3R_23163185_SNP [dm6]	G	A	6.072e^-4	0.959	INTERGENIC
3L	2580460	3L_2580460_SNP [dm3] 3L_2580460_SNP [dm6]	G	A	6.085e^-4	0.959	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10888518	2L_10888518_SNP [dm3] 2L_10888518_SNP [dm6]	C	A	6.087e^-4	0.959	SYNONYMOUS_CODING CG14071
2R	19644582	2R_19644582_SNP [dm3] 2R_23757059_SNP [dm6]	G	A	6.088e^-4	0.959	NON_SYNONYMOUS_CODING CG9850 INTRON CG9850
X	21429964	X_21429964_SNP [dm3] X_21558937_SNP [dm6]	C	T	6.116e^-4	0.959	INTERGENIC
2R	14075978	2R_14075978_SNP [dm3] 2R_18188473_SNP [dm6]	A	G	6.118e^-4	0.959	UPSTREAM CG14500 DOWNSTREAM CG14499 INTRON CG33958
2L	5159192	2L_5159192_SNP [dm3] 2L_5159192_SNP [dm6]	T	C	6.120e^-4	0.959	SYNONYMOUS_CODING Msp300 DOWNSTREAM Msp300 INTRON Msp300
3R	13975288	3R_13975288_SNP [dm3] 3R_18149566_SNP [dm6]	G	A	6.122e^-4	0.959	INTERGENIC
3L	20163749	3L_20163749_SNP [dm3] 3L_20170649_SNP [dm6]	G	A	6.140e^-4	0.959	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
3L	14109233	3L_14109233_DEL [dm3] 3L_14116133_DEL [dm6]	TT	T	6.148e^-4	0.959	INTRON Sox21b
X	7956868	X_7956868_SNP [dm3] X_8062835_SNP [dm6]	T	G	6.151e^-4	0.959	INTRON mys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4227059	2L_4227059_SNP [dm3] 2L_4227059_SNP [dm6]	C	A	6.169e^-4	0.959	START_GAINED CG3702 UTR_5_PRIME CG3702 UPSTREAM RpL40 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2R	3535665	2R_3535665_SNP [dm3] 2R_7648160_SNP [dm6]	C	T	6.218e^-4	0.959	DOWNSTREAM CG43340 INTRON CG43340
3L	1656535	3L_1656535_SNP [dm3] 3L_1656535_SNP [dm6]	C	A	6.218e^-4	0.959	SYNONYMOUS_CODING CG7971 INTRON CG7971	TF binding site mE1_TFBS_chinmo
2L	8286181	2L_8286181_SNP [dm3] 2L_8286181_SNP [dm6]	T	C	6.302e^-4	0.959	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	2526093	2L_2526093_SNP [dm3] 2L_2526093_SNP [dm6]	G	A	6.306e^-4	0.959	INTERGENIC
2L	2526207	2L_2526207_SNP [dm3] 2L_2526207_SNP [dm6]	T	C	6.306e^-4	0.959	INTERGENIC
2L	2526209	2L_2526209_SNP [dm3] 2L_2526209_SNP [dm6]	T	C	6.306e^-4	0.959	INTERGENIC
2L	2526218	2L_2526218_INS [dm3] 2L_2526218_INS [dm6]	T	TACACAAT	6.306e^-4	0.959	INTERGENIC
2R	10083046	2R_10083046_INS [dm3] 2R_14195541_INS [dm6]	C	CCTGAAACCCGAGGGCGAAT...	6.329e^-4	0.959	CODON_INSERTION CG30069	TF binding site BDTNP1_TFBS_twi
2R	16700937	2R_16700937_INS [dm3] 2R_20813432_INS [dm6]	T	TG	6.329e^-4	0.959	INTERGENIC
2L	14530522	2L_14530522_DEL [dm3] 2L_14530522_DEL [dm6]	CCCTTAAATATC...	C	6.340e^-4	0.959	DOWNSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	8841783	X_8841783_SNP [dm3] X_8947750_SNP [dm6]	A	G	6.343e^-4	0.959	INTRON rdgA
3L	1300964	3L_1300964_SNP [dm3] 3L_1300964_SNP [dm6]	T	G	6.351e^-4	0.959	UTR_3_PRIME Rac1 DOWNSTREAM Rac1 & 1 other
X	4789988	X_4789988_SNP [dm3] X_4895955_SNP [dm6]	A	T	6.351e^-4	0.959	INTRON CG42594	TF binding site mE1_TFBS_chinmo
X	5978342	X_5978342_SNP [dm3] X_6084309_SNP [dm6]	A	C	6.360e^-4	0.959	SYNONYMOUS_CODING Mipp2 UTR_3_PRIME raptor
2L	12485326	2L_12485326_SNP [dm3] 2L_12485326_SNP [dm6]	A	T	6.361e^-4	0.959	INTRON bun	TF binding site mE1_TFBS_Trl
2L	21904808	2L_21904808_SNP [dm3] 2L_21904808_SNP [dm6]	A	T	6.361e^-4	0.959	INTERGENIC
2L	557699	2L_557699_SNP [dm3] 2L_557699_SNP [dm6]	A	G	6.361e^-4	0.959	INTRON rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16467353	2R_16467353_SNP [dm3] 2R_20579848_SNP [dm6]	T	A	6.361e^-4	0.959	INTRON qsm
2R	16778920	2R_16778920_DEL [dm3] 2R_20891415_DEL [dm6]	GCACAGCCTGCCTGCCAAGC...	A	6.361e^-4	0.959	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17245337	2R_17245337_SNP [dm3] 2R_21357832_SNP [dm6]	A	G	6.361e^-4	0.959	INTRON cv-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17926389	2R_17926389_SNP [dm3] 2R_22038884_SNP [dm6]	T	C	6.361e^-4	0.959	INTRON CG34370
2R	4803460	2R_4803460_SNP [dm3] 2R_8915955_SNP [dm6]	T	G	6.361e^-4	0.959	SYNONYMOUS_CODING lin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12654828	3R_12654828_SNP [dm3] 3R_16829106_SNP [dm6]	G	A	6.361e^-4	0.959	UTR_5_PRIME abd-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3R	12654925	3R_12654925_SNP [dm3] 3R_16829203_SNP [dm6]	G	A	6.361e^-4	0.959	START_GAINED abd-A UTR_5_PRIME abd-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
X	3989641	X_3989641_SNP [dm3] X_4095608_SNP [dm6]	G	T	6.361e^-4	0.959	INTERGENIC
X	8972923	X_8972923_SNP [dm3] X_9078890_SNP [dm6]	C	T	6.362e^-4	0.959	UTR_3_PRIME CG7246 UPSTREAM CG44325	TF binding site mE1_TFBS_HSA
3L	23023063	3L_23023063_SNP [dm3] 3L_23029963_SNP [dm6]	G	C	6.365e^-4	0.959	INTRON nrm
X	7952006	X_7952006_SNP [dm3] X_8057973_SNP [dm6]	T	A	6.385e^-4	0.959	INTRON fs_1_h	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	7953814	X_7953814_SNP [dm3] X_8059781_SNP [dm6]	T	C	6.385e^-4	0.959	INTRON fs_1_h	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	9250710	2L_9250710_SNP [dm3] 2L_9250710_SNP [dm6]	T	G	6.426e^-4	0.959	DOWNSTREAM CR43734 & 2 others INTRON aust	TF binding site mE1_TFBS_HSA
2L	1989066	2L_1989066_SNP [dm3] 2L_1989066_SNP [dm6]	C	G	6.444e^-4	0.959	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC
2L	1980874	2L_1980874_SNP [dm3] 2L_1980874_SNP [dm6]	A	T	6.461e^-4	0.959	UPSTREAM CG15362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7514835	2L_7514835_SNP [dm3] 2L_7514835_SNP [dm6]	G	C	6.461e^-4	0.959	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
2R	16767091	2R_16767091_INS [dm3] 2R_20879586_INS [dm6]	T	TT	6.475e^-4	0.959	UPSTREAM Cib2 DOWNSTREAM Ipk1 INTERGENIC
2R	14422964	2R_14422964_SNP [dm3] 2R_18535459_SNP [dm6]	T	G	6.505e^-4	0.959	UTR_3_PRIME CG10924 DOWNSTREAM CG10924
2L	22321293	2L_22321293_SNP [dm3] 2L_22321293_SNP [dm6]	C	G	6.522e^-4	0.959	INTRON CG17018	transposable element FlyBase
2L	10164238	2L_10164238_SNP [dm3] 2L_10164238_SNP [dm6]	G	A	6.565e^-4	0.959	INTRON CG44153
2L	16585587	2L_16585587_SNP [dm3] 2L_16585587_SNP [dm6]	G	T	6.565e^-4	0.959	INTRON CG42389
2L	16585590	2L_16585590_SNP [dm3] 2L_16585590_SNP [dm6]	C	T	6.565e^-4	0.959	INTRON CG42389
2L	3762537	2L_3762537_SNP [dm3] 2L_3762537_SNP [dm6]	C	T	6.565e^-4	0.959	SYNONYMOUS_CODING CG43707	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	4955680	2L_4955680_SNP [dm3] 2L_4955680_SNP [dm6]	C	A	6.565e^-4	0.959	NON_SYNONYMOUS_CODING Marcal1 UPSTREAM Jon25Bi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	6012997	2L_6012997_SNP [dm3] 2L_6012997_SNP [dm6]	T	A	6.565e^-4	0.959	UPSTREAM CG9098 DOWNSTREAM H2.0 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	8802467	2L_8802467_SNP [dm3] 2L_8802467_SNP [dm6]	C	T	6.565e^-4	0.959	INTERGENIC
2L	906493	2L_906493_DEL [dm3] 2L_906493_DEL [dm6]	TATAT	T	6.565e^-4	0.959	INTERGENIC
2R	5624257	2R_5624257_SNP [dm3] 2R_9736752_SNP [dm6]	C	G	6.565e^-4	0.959	INTRON sqa
3R	4938018	3R_4938018_SNP [dm3] 3R_9112296_SNP [dm6]	C	A	6.570e^-4	0.959	INTRON pum
X	6476934	X_6476934_SNP [dm3] X_6582901_SNP [dm6]	A	C	6.570e^-4	0.959	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15731993	2R_15731993_SNP [dm3] 2R_19844488_SNP [dm6]	A	G	6.572e^-4	0.959	UPSTREAM CG44569 INTERGENIC
2R	15731994	2R_15731994_SNP [dm3] 2R_19844489_SNP [dm6]	G	A	6.572e^-4	0.959	UPSTREAM CG44569 INTERGENIC
X	21434151	X_21434151_SNP [dm3] X_21563124_SNP [dm6]	G	A	6.572e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_inv
X	21436049	X_21436049_SNP [dm3] X_21565022_SNP [dm6]	T	A	6.572e^-4	0.959	INTERGENIC
X	21436417	X_21436417_SNP [dm3] X_21565390_SNP [dm6]	G	T	6.572e^-4	0.959	INTERGENIC
X	21436450	X_21436450_SNP [dm3] X_21565423_SNP [dm6]	A	G	6.572e^-4	0.959	INTERGENIC
X	21436591	X_21436591_SNP [dm3] X_21565564_SNP [dm6]	A	C	6.572e^-4	0.959	INTERGENIC
3L	12158888	3L_12158888_SNP [dm3] 3L_12165788_SNP [dm6]	G	A	6.588e^-4	0.959	UTR_3_PRIME Rh7
3R	15161083	3R_15161083_SNP [dm3] 3R_19335361_SNP [dm6]	A	G	6.592e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6959612	3R_6959612_SNP [dm3] 3R_11133890_SNP [dm6]	A	C	6.592e^-4	0.959	INTERGENIC
X	4215166	X_4215166_SNP [dm3] X_4321133_SNP [dm6]	C	T	6.611e^-4	0.959	SYNONYMOUS_CODING CG2982 DOWNSTREAM mRpL33	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3648444	2L_3648444_SNP [dm3] 2L_3648444_SNP [dm6]	G	T	6.622e^-4	0.959	INTRON for	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9726569	3L_9726569_SNP [dm3] 3L_9733469_SNP [dm6]	T	C	6.632e^-4	0.959	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
2L	718765	2L_718765_SNP [dm3] 2L_718765_SNP [dm6]	C	T	6.646e^-4	0.959	INTERGENIC
2L	12152563	2L_12152563_SNP [dm3] 2L_12152563_SNP [dm6]	G	A	6.681e^-4	0.959	INTRON CG31760
3L	699691	3L_699691_SNP [dm3] 3L_699691_SNP [dm6]	A	G	6.689e^-4	0.959	UPSTREAM CG13894 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
2L	16358423	2L_16358423_INS [dm3] 2L_16358423_INS [dm6]	A	AA	6.720e^-4	0.959	INTERGENIC
2L	12484931	2L_12484931_SNP [dm3] 2L_12484931_SNP [dm6]	C	T	6.741e^-4	0.959	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6346996	2R_6346996_SNP [dm3] 2R_10459491_SNP [dm6]	A	T	6.744e^-4	0.959	UPSTREAM Cyp49a1 INTRON Galphao
2R	6347025	2R_6347025_INS [dm3] 2R_10459520_INS [dm6]	G	GC	6.744e^-4	0.959	UPSTREAM Cyp49a1 INTRON Galphao
2R	6347030	2R_6347030_SNP [dm3] 2R_10459525_SNP [dm6]	T	C	6.744e^-4	0.959	UPSTREAM Cyp49a1 INTRON Galphao
2R	6347034	2R_6347034_DEL [dm3] 2R_10459529_DEL [dm6]	AG	A	6.744e^-4	0.959	UPSTREAM Cyp49a1 INTRON Galphao
2R	6347047	2R_6347047_SNP [dm3] 2R_10459542_SNP [dm6]	C	T	6.744e^-4	0.959	UPSTREAM Cyp49a1 INTRON Galphao
2R	6595578	2R_6595578_SNP [dm3] 2R_10708073_SNP [dm6]	T	A	6.744e^-4	0.959	INTRON stan	TF binding site mE1_TFBS_cad
2R	6595613	2R_6595613_SNP [dm3] 2R_10708108_SNP [dm6]	A	T	6.744e^-4	0.959	INTRON stan	TF binding site mE1_TFBS_cad
X	8572001	X_8572001_SNP [dm3] X_8677968_SNP [dm6]	G	T	6.760e^-4	0.959	NON_SYNONYMOUS_CODING CG12772	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17078110	X_17078110_SNP [dm3] X_17184077_SNP [dm6]	T	A	6.760e^-4	0.959	UPSTREAM CR44026 INTRON baz
2L	3300910	2L_3300910_SNP [dm3] 2L_3300910_SNP [dm6]	T	G	6.768e^-4	0.959	INTRON CG9663
2R	14273366	2R_14273366_SNP [dm3] 2R_18385861_SNP [dm6]	T	A	6.771e^-4	0.959	UPSTREAM CG15067 & 1 other DOWNSTREAM CG18107 INTERGENIC
2R	12144016	2R_12144016_SNP [dm3] 2R_16256511_SNP [dm6]	T	C	6.786e^-4	0.959	INTRON CngA
2R	10957108	2R_10957108_SNP [dm3] 2R_15069603_SNP [dm6]	G	T	6.796e^-4	0.959	INTERGENIC
2L	11208850	2L_11208850_SNP [dm3] 2L_11208850_SNP [dm6]	C	T	6.800e^-4	0.959	INTERGENIC
X	9002342	X_9002342_SNP [dm3] X_9108309_SNP [dm6]	A	T	6.807e^-4	0.959	UTR_3_PRIME Arfrp1 UPSTREAM AP-1gamma	TF binding site BDTNP1_TFBS_dl
X	10867109	X_10867109_SNP [dm3] X_10973076_SNP [dm6]	A	C	6.817e^-4	0.959	INTRON CG42339
X	10867110	X_10867110_SNP [dm3] X_10973077_SNP [dm6]	A	T	6.817e^-4	0.959	INTRON CG42339
X	10867112	X_10867112_SNP [dm3] X_10973079_SNP [dm6]	C	T	6.817e^-4	0.959	INTRON CG42339
X	10867116	X_10867116_SNP [dm3] X_10973083_SNP [dm6]	T	C	6.817e^-4	0.959	INTRON CG42339
X	20160564	X_20160564_SNP [dm3] X_20289537_SNP [dm6]	G	C	6.845e^-4	0.959	INTERGENIC
2L	14433815	2L_14433815_SNP [dm3] 2L_14433815_SNP [dm6]	G	T	6.848e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10981141	2L_10981141_SNP [dm3] 2L_10981141_SNP [dm6]	T	A	6.849e^-4	0.959	INTRON SCAR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5321431	2L_5321431_SNP [dm3] 2L_5321431_SNP [dm6]	T	C	6.879e^-4	0.959	SYNONYMOUS_CODING Ncoa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10867348	X_10867348_SNP [dm3] X_10973315_SNP [dm6]	G	C	6.885e^-4	0.959	INTRON CG42339
3R	11143644	3R_11143644_SNP [dm3] 3R_15317922_SNP [dm6]	G	T	6.888e^-4	0.959	SYNONYMOUS_CODING CG14866 DOWNSTREAM CG6276	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11143645	3R_11143645_SNP [dm3] 3R_15317923_SNP [dm6]	G	C	6.888e^-4	0.959	NON_SYNONYMOUS_CODING CG14866 DOWNSTREAM CG6276	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11143657	3R_11143657_SNP [dm3] 3R_15317935_SNP [dm6]	A	G	6.888e^-4	0.959	NON_SYNONYMOUS_CODING CG14866 DOWNSTREAM CG6276	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16754675	3L_16754675_SNP [dm3] 3L_16761575_SNP [dm6]	T	C	6.909e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	7520327	2L_7520327_SNP [dm3] 2L_7520327_SNP [dm6]	A	T	6.955e^-4	0.959	DOWNSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8399193	2L_8399193_SNP [dm3] 2L_8399193_SNP [dm6]	G	T	6.955e^-4	0.959	NON_SYNONYMOUS_CODING CG13386
2R	10939732	2R_10939732_SNP [dm3] 2R_15052227_SNP [dm6]	C	G	6.955e^-4	0.959	INTERGENIC
2R	2917768	2R_2917768_SNP [dm3] 2R_7030263_SNP [dm6]	G	C	6.955e^-4	0.959	INTRON Tsp42Eg
2R	5307193	2R_5307193_SNP [dm3] 2R_9419688_SNP [dm6]	C	T	6.955e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26471757	3R_26471757_SNP [dm3] 3R_30646035_SNP [dm6]	A	C	6.957e^-4	0.959	UPSTREAM CG31013 DOWNSTREAM PH4alphaPV INTERGENIC
2L	18521268	2L_18521268_SNP [dm3] 2L_18521268_SNP [dm6]	C	G	6.968e^-4	0.959	INTRON CG10211
2R	16395022	2R_16395022_SNP [dm3] 2R_20507517_SNP [dm6]	C	G	7.002e^-4	0.959	UPSTREAM CR44646 DOWNSTREAM CR44645 INTERGENIC
3R	20833903	3R_20833903_DEL [dm3] 3R_25008181_DEL [dm6]	ACTAACTGA	A	7.004e^-4	0.959	INTRON tnc
X	13982435	X_13982435_SNP [dm3] X_14088402_SNP [dm6]	G	A	7.033e^-4	0.959	INTERGENIC
X	12587533	X_12587533_SNP [dm3] X_12693500_SNP [dm6]	A	G	7.049e^-4	0.959	INTRON Smr	TF binding site mE1_TFBS_inv
2L	7513583	2L_7513583_DEL [dm3] 2L_7513583_DEL [dm6]	AA	A	7.053e^-4	0.959	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21755325	3R_21755325_SNP [dm3] 3R_25929603_SNP [dm6]	C	G	7.061e^-4	0.959	INTRON CCAP-R
3R	21755437	3R_21755437_SNP [dm3] 3R_25929715_SNP [dm6]	C	A	7.061e^-4	0.959	INTRON CCAP-R
3R	21755502	3R_21755502_SNP [dm3] 3R_25929780_SNP [dm6]	G	A	7.061e^-4	0.959	INTRON CCAP-R
3L	23175942	3L_23175942_SNP [dm3] 3L_23182842_SNP [dm6]	C	T	7.066e^-4	0.959	DOWNSTREAM CR43967 INTRON CG34031
X	14909658	X_14909658_SNP [dm3] X_15015625_SNP [dm6]	A	T	7.086e^-4	0.959	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
3L	10411322	3L_10411322_SNP [dm3] 3L_10418222_SNP [dm6]	C	A	7.099e^-4	0.959	INTERGENIC
2L	1161301	2L_1161301_SNP [dm3] 2L_1161301_SNP [dm6]	T	A	7.103e^-4	0.959	NON_SYNONYMOUS_CODING CG5080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2631873	3R_2631873_SNP [dm3] 3R_6806151_SNP [dm6]	C	T	7.108e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6287105	3L_6287105_SNP [dm3] 3L_6294005_SNP [dm6]	A	T	7.145e^-4	0.959	INTERGENIC
2R	10685374	2R_10685374_SNP [dm3] 2R_14797869_SNP [dm6]	T	G	7.151e^-4	0.959	UPSTREAM kn INTRON kn
3L	16482989	3L_16482989_SNP [dm3] 3L_16489889_SNP [dm6]	T	A	7.166e^-4	0.959	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	19699202	2L_19699202_SNP [dm3] 2L_19699202_SNP [dm6]	C	T	7.170e^-4	0.959	DOWNSTREAM scw INTRON Lar	TF binding site BDTNP1_TFBS_da
3L	3575645	3L_3575645_SNP [dm3] 3L_3575645_SNP [dm6]	A	G	7.177e^-4	0.959	INTRON Eip63E
X	14385448	X_14385448_SNP [dm3] X_14491415_SNP [dm6]	C	T	7.207e^-4	0.959	INTERGENIC
X	6539195	X_6539195_SNP [dm3] X_6645162_SNP [dm6]	A	T	7.219e^-4	0.959	NON_SYNONYMOUS_CODING pigs
X	6539251	X_6539251_SNP [dm3] X_6645218_SNP [dm6]	G	T	7.219e^-4	0.959	SYNONYMOUS_CODING pigs
2L	8388322	2L_8388322_SNP [dm3] 2L_8388322_SNP [dm6]	A	T	7.231e^-4	0.959	UTR_3_PRIME CG13384 DOWNSTREAM CG42819	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19687528	3R_19687528_SNP [dm3] 3R_23861806_SNP [dm6]	A	G	7.238e^-4	0.959	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	19687547	3R_19687547_SNP [dm3] 3R_23861825_SNP [dm6]	G	A	7.238e^-4	0.959	SYNONYMOUS_CODING Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	3992081	2L_3992081_SNP [dm3] 2L_3992081_SNP [dm6]	A	T	7.250e^-4	0.959	UPSTREAM fred INTERGENIC	TF binding site mE1_TFBS_Trl
2L	6780081	2L_6780081_SNP [dm3] 2L_6780081_SNP [dm6]	T	C	7.251e^-4	0.959	SYNONYMOUS_CODING nrv1
3R	18490566	3R_18490566_SNP [dm3] 3R_22664844_SNP [dm6]	C	T	7.254e^-4	0.959	INTRON CG45058	TF binding site mE1_TFBS_chinmo
2R	17399374	2R_17399374_SNP [dm3] 2R_21511869_SNP [dm6]	G	A	7.258e^-4	0.959	SYNONYMOUS_CODING MESK2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3322052	3L_3322052_SNP [dm3] 3L_3322052_SNP [dm6]	G	T	7.266e^-4	0.959	UTR_3_PRIME CG42456 & 2 others DOWNSTREAM CG11526
3L	10300150	3L_10300150_SNP [dm3] 3L_10307050_SNP [dm6]	A	G	7.300e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	2665172	3L_2665172_SNP [dm3] 3L_2665172_SNP [dm6]	T	G	7.300e^-4	0.959	UTR_3_PRIME Fife INTRON Fife
3L	8555127	3L_8555127_SNP [dm3] 3L_8562027_SNP [dm6]	G	A	7.300e^-4	0.959	SYNONYMOUS_CODING rhea	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	8821132	3R_8821132_SNP [dm3] 3R_12995410_SNP [dm6]	G	A	7.300e^-4	0.959	UPSTREAM CG7488 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	8822193	3R_8822193_SNP [dm3] 3R_12996471_SNP [dm6]	C	A	7.300e^-4	0.959	NON_SYNONYMOUS_CODING CG7488 DOWNSTREAM CG17327 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8822216	3R_8822216_SNP [dm3] 3R_12996494_SNP [dm6]	T	C	7.300e^-4	0.959	SYNONYMOUS_CODING CG7488 DOWNSTREAM CG17327 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14555033	3L_14555033_SNP [dm3] 3L_14561933_SNP [dm6]	G	A	7.301e^-4	0.959	SYNONYMOUS_CODING CG34039 DOWNSTREAM CR44843
3L	1564675	3L_1564675_SNP [dm3] 3L_1564675_SNP [dm6]	C	T	7.313e^-4	0.959	UPSTREAM CG12003 INTRON CG7879
3L	3175838	3L_3175838_SNP [dm3] 3L_3175838_SNP [dm6]	C	T	7.339e^-4	0.959	SYNONYMOUS_CODING CG14964	TF binding site mE1_TFBS_chinmo
X	8288443	X_8288443_SNP [dm3] X_8394410_SNP [dm6]	A	C	7.348e^-4	0.959	INTERGENIC
2R	10685376	2R_10685376_SNP [dm3] 2R_14797871_SNP [dm6]	T	G	7.376e^-4	0.959	UPSTREAM kn INTRON kn
3R	18684468	3R_18684468_SNP [dm3] 3R_22858746_SNP [dm6]	A	G	7.384e^-4	0.959	INTERGENIC
3R	7133795	3R_7133795_SNP [dm3] 3R_11308073_SNP [dm6]	A	G	7.411e^-4	0.959	INTERGENIC
2R	9195555	2R_9195555_SNP [dm3] 2R_13308050_SNP [dm6]	A	T	7.471e^-4	0.959	INTERGENIC
X	20521149	X_20521149_SNP [dm3] X_20650122_SNP [dm6]	G	A	7.471e^-4	0.959	INTERGENIC
2L	1120994	2L_1120994_SNP [dm3] 2L_1120994_SNP [dm6]	G	C	7.492e^-4	0.959	INTRON Pino	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3301343	2L_3301343_SNP [dm3] 2L_3301343_SNP [dm6]	A	G	7.492e^-4	0.959	SYNONYMOUS_CODING CG9663	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	555036	2L_555036_SNP [dm3] 2L_555036_SNP [dm6]	C	T	7.492e^-4	0.959	SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad
2R	4820309	2R_4820309_SNP [dm3] 2R_8932804_SNP [dm6]	C	T	7.501e^-4	0.959	SYNONYMOUS_CODING PAN2 UPSTREAM CG13749	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15154117	3R_15154117_SNP [dm3] 3R_19328395_SNP [dm6]	T	C	7.501e^-4	0.959	UPSTREAM CR44175 INTERGENIC
X	14901091	X_14901091_SNP [dm3] X_15007058_SNP [dm6]	A	G	7.530e^-4	0.959	UTR_3_PRIME eag
2R	16703018	2R_16703018_SNP [dm3] 2R_20815513_SNP [dm6]	A	T	7.556e^-4	0.959	INTERGENIC
3R	6951895	3R_6951895_SNP [dm3] 3R_11126173_SNP [dm6]	C	A	7.571e^-4	0.959	DOWNSTREAM Ugt86Dd INTERGENIC
X	8746914	X_8746914_SNP [dm3] X_8852881_SNP [dm6]	G	A	7.575e^-4	0.959	UPSTREAM CG12075 INTRON CG12075
3L	13613054	3L_13613054_SNP [dm3] 3L_13619954_SNP [dm6]	A	G	7.590e^-4	0.959	UPSTREAM mir-289 INTRON bru-3
X	12439720	X_12439720_SNP [dm3] X_12545687_SNP [dm6]	G	A	7.593e^-4	0.959	INTRON CG43921	TF binding site mE1_TFBS_HSA
3L	3904147	3L_3904147_SNP [dm3] 3L_3904147_SNP [dm6]	C	T	7.602e^-4	0.959	SYNONYMOUS_CODING Sc2 UPSTREAM Ubi-p63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	3904237	3L_3904237_SNP [dm3] 3L_3904237_SNP [dm6]	C	T	7.602e^-4	0.959	SYNONYMOUS_CODING Sc2	TF binding site mE1_TFBS_sens
2L	4017066	2L_4017066_SNP [dm3] 2L_4017066_SNP [dm6]	G	A	7.626e^-4	0.959	INTERGENIC
2L	8811213	2L_8811213_SNP [dm3] 2L_8811213_SNP [dm6]	A	T	7.639e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	14633805	2L_14633805_SNP [dm3] 2L_14633805_SNP [dm6]	C	G	7.679e^-4	0.959	INTRON osp
2L	5023300	2L_5023300_SNP [dm3] 2L_5023300_SNP [dm6]	A	G	7.679e^-4	0.959	INTRON vkg
2L	5023301	2L_5023301_SNP [dm3] 2L_5023301_SNP [dm6]	G	A	7.679e^-4	0.959	INTRON vkg
3R	19763565	3R_19763565_SNP [dm3] 3R_23937843_SNP [dm6]	G	A	7.722e^-4	0.959	SYNONYMOUS_CODING Gdh	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	4125870	X_4125870_SNP [dm3] X_4231837_SNP [dm6]	T	G	7.723e^-4	0.959	INTERGENIC
2L	19720688	2L_19720688_SNP [dm3] 2L_19720688_SNP [dm6]	T	C	7.744e^-4	0.959	INTRON Lar
2L	2526729	2L_2526729_SNP [dm3] 2L_2526729_SNP [dm6]	A	C	7.765e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4242232	2L_4242232_SNP [dm3] 2L_4242232_SNP [dm6]	G	C	7.771e^-4	0.959	DOWNSTREAM CR44058 EXON CR44058
2L	5959004	2L_5959004_SNP [dm3] 2L_5959004_SNP [dm6]	C	T	7.771e^-4	0.959	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC	TF binding site mE1_TFBS_cad
2L	718541	2L_718541_SNP [dm3] 2L_718541_SNP [dm6]	C	A	7.771e^-4	0.959	INTERGENIC
X	20537928	X_20537928_SNP [dm3] X_20666901_SNP [dm6]	C	A	7.771e^-4	0.959	INTRON CG1835
2L	3301041	2L_3301041_SNP [dm3] 2L_3301041_SNP [dm6]	C	T	7.774e^-4	0.959	INTRON CG9663
2L	3301053	2L_3301053_SNP [dm3] 2L_3301053_SNP [dm6]	T	A	7.774e^-4	0.959	INTRON CG9663
2L	3301058	2L_3301058_SNP [dm3] 2L_3301058_SNP [dm6]	A	T	7.774e^-4	0.959	INTRON CG9663
3L	17244212	3L_17244212_SNP [dm3] 3L_17251112_SNP [dm6]	A	C	7.776e^-4	0.959	INTRON CR43870
3L	17244214	3L_17244214_SNP [dm3] 3L_17251114_SNP [dm6]	C	A	7.776e^-4	0.959	INTRON CR43870
3L	17244217	3L_17244217_SNP [dm3] 3L_17251117_SNP [dm6]	T	G	7.776e^-4	0.959	INTRON CR43870
3L	17244273	3L_17244273_SNP [dm3] 3L_17251173_SNP [dm6]	T	C	7.776e^-4	0.959	INTRON CR43870
2L	4814256	2L_4814256_SNP [dm3] 2L_4814256_SNP [dm6]	A	G	7.786e^-4	0.959	INTRON CG15629
2R	15327928	2R_15327928_SNP [dm3] 2R_19440423_SNP [dm6]	G	C	7.792e^-4	0.959	INTRON Spt5	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	12133253	2L_12133253_SNP [dm3] 2L_12133253_SNP [dm6]	A	G	7.794e^-4	0.959	SYNONYMOUS_CODING rho-6	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	16697663	2R_16697663_SNP [dm3] 2R_20810158_SNP [dm6]	T	A	7.809e^-4	0.959	INTERGENIC
3L	15836130	3L_15836130_SNP [dm3] 3L_15843030_SNP [dm6]	C	T	7.815e^-4	0.959	DOWNSTREAM mir-263b INTRON CG32150
3R	22253347	3R_22253347_SNP [dm3] 3R_26427625_SNP [dm6]	C	T	7.817e^-4	0.959	UPSTREAM CR43434 INTRON CR31084
X	21435039	X_21435039_SNP [dm3] X_21564012_SNP [dm6]	C	T	7.852e^-4	0.959	INTERGENIC
3L	8101853	3L_8101853_SNP [dm3] 3L_8108753_SNP [dm6]	T	C	7.854e^-4	0.959	UTR_3_PRIME Ect4 UPSTREAM fan DOWNSTREAM Ect4	TF binding site mE1_TFBS_bab1
2R	13512037	2R_13512037_SNP [dm3] 2R_17624532_SNP [dm6]	C	T	7.884e^-4	0.959	INTRON CG10936
2R	6595486	2R_6595486_SNP [dm3] 2R_10707981_SNP [dm6]	A	C	7.884e^-4	0.959	SYNONYMOUS_CODING stan
2R	13594783	2R_13594783_SNP [dm3] 2R_17707278_SNP [dm6]	C	T	7.898e^-4	0.959	SYNONYMOUS_CODING CG6424	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3R	26661591	3R_26661591_SNP [dm3] 3R_30835869_SNP [dm6]	T	A	7.898e^-4	0.959	INTRON CG15544
2L	14401312	2L_14401312_SNP [dm3] 2L_14401312_SNP [dm6]	T	A	7.906e^-4	0.959	INTRON elB
2L	9271976	2L_9271976_SNP [dm3] 2L_9271976_SNP [dm6]	G	T	7.906e^-4	0.959	UPSTREAM Ggamma30A INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
3R	20397744	3R_20397744_SNP [dm3] 3R_24572022_SNP [dm6]	G	T	7.929e^-4	0.959	UTR_5_PRIME CG13624 UPSTREAM CG13624 INTRON CG13624	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9404203	2L_9404203_SNP [dm3] 2L_9404203_SNP [dm6]	A	C	7.959e^-4	0.959	INTRON Shawl
2L	9404206	2L_9404206_SNP [dm3] 2L_9404206_SNP [dm6]	C	T	7.959e^-4	0.959	INTRON Shawl
3L	9620434	3L_9620434_SNP [dm3] 3L_9627334_SNP [dm6]	C	A	7.973e^-4	0.959	UTR_3_PRIME Or67b DOWNSTREAM CG3335
2L	16084551	2L_16084551_SNP [dm3] 2L_16084551_SNP [dm6]	T	G	7.982e^-4	0.959	INTERGENIC
2L	8985119	2L_8985119_SNP [dm3] 2L_8985119_SNP [dm6]	G	T	7.982e^-4	0.959	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8985141	2L_8985141_SNP [dm3] 2L_8985141_SNP [dm6]	T	C	7.982e^-4	0.959	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8985147	2L_8985147_SNP [dm3] 2L_8985147_SNP [dm6]	C	T	7.982e^-4	0.959	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	4905328	3R_4905328_SNP [dm3] 3R_9079606_SNP [dm6]	T	G	7.991e^-4	0.959	INTRON pum
3R	4905329	3R_4905329_SNP [dm3] 3R_9079607_SNP [dm6]	T	C	7.991e^-4	0.959	INTRON pum
2R	3531823	2R_3531823_SNP [dm3] 2R_7644318_SNP [dm6]	C	T	7.995e^-4	0.959	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
2L	4222913	2L_4222913_SNP [dm3] 2L_4222913_SNP [dm6]	A	T	7.999e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	1493284	3L_1493284_SNP [dm3] 3L_1493284_SNP [dm6]	A	C	8.026e^-4	0.959	INTRON CG12084	TF binding site mE1_TFBS_cad
2L	1300650	2L_1300650_SNP [dm3] 2L_1300650_SNP [dm6]	T	C	8.059e^-4	0.959	INTERGENIC
2L	21024705	2L_21024705_SNP [dm3] 2L_21024705_SNP [dm6]	G	T	8.059e^-4	0.959	INTRON CG42238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4221182	2L_4221182_SNP [dm3] 2L_4221182_SNP [dm6]	G	C	8.059e^-4	0.959	INTRON ft	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7963032	2L_7963032_SNP [dm3] 2L_7963032_SNP [dm6]	A	G	8.059e^-4	0.959	INTRON Snoo
2L	7963046	2L_7963046_SNP [dm3] 2L_7963046_SNP [dm6]	A	G	8.059e^-4	0.959	INTRON Snoo
2L	8484745	2L_8484745_SNP [dm3] 2L_8484745_SNP [dm6]	T	C	8.065e^-4	0.959	UPSTREAM unsRNA:d-a INTRON d	TF binding site mE1_TFBS_chinmo
2L	1015285	2L_1015285_SNP [dm3] 2L_1015285_SNP [dm6]	A	G	8.121e^-4	0.959	INTRON IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2673001	2R_2673001_SNP [dm3] 2R_6785496_SNP [dm6]	C	T	8.121e^-4	0.959	INTRON Epac
2L	1155783	2L_1155783_SNP [dm3] 2L_1155783_SNP [dm6]	A	G	8.131e^-4	0.959	SYNONYMOUS_CODING capt UTR_5_PRIME capt INTRON capt	TF binding site BDTNP1_TFBS_dl
2L	1155839	2L_1155839_SNP [dm3] 2L_1155839_SNP [dm6]	G	A	8.131e^-4	0.959	NON_SYNONYMOUS_CODING capt UTR_5_PRIME capt INTRON capt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	1156078	2L_1156078_SNP [dm3] 2L_1156078_SNP [dm6]	C	T	8.131e^-4	0.959	UTR_5_PRIME capt INTRON capt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	10315737	2R_10315737_SNP [dm3] 2R_14428232_SNP [dm6]	G	A	8.132e^-4	0.959	SYNONYMOUS_CODING phyl	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	10315770	2R_10315770_SNP [dm3] 2R_14428265_SNP [dm6]	A	T	8.132e^-4	0.959	NON_SYNONYMOUS_CODING phyl	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_sens
X	7959396	X_7959396_SNP [dm3] X_8065363_SNP [dm6]	T	C	8.132e^-4	0.959	INTRON mys
2L	1988868	2L_1988868_SNP [dm3] 2L_1988868_SNP [dm6]	G	A	8.206e^-4	0.959	UTR_3_PRIME Npc2a UPSTREAM CR42874	TF binding site mE1_TFBS_cad
2L	1988879	2L_1988879_SNP [dm3] 2L_1988879_SNP [dm6]	A	G	8.206e^-4	0.959	UTR_3_PRIME Npc2a UPSTREAM CR42874	TF binding site mE1_TFBS_cad

By genomic position
Variant impact
Gene name

ParaquatDA phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results