DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.743e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1917 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	15137983	3R_15137983_SNP [dm3] 3R_19312261_SNP [dm6]	G	A	1.950e^-6	0.888	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18914456	3L_18914456_SNP [dm3] 3L_18921356_SNP [dm6]	G	C	2.415e^-6	0.888	SYNONYMOUS_CODING CG3819	TF binding site mE1_TFBS_cad
3L	13929147	3L_13929147_SNP [dm3] 3L_13936047_SNP [dm6]	T	C	3.273e^-6	0.888	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2757738	2L_2757738_DEL [dm3] 2L_2757738_DEL [dm6]	AT	A	4.834e^-6	0.888	UTR_3_PRIME Bacc DOWNSTREAM CR44772 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	2424463	2L_2424463_INS [dm3] 2L_2424463_INS [dm6]	A	AA	5.112e^-6	0.888	UTR_3_PRIME CG9886 UPSTREAM CG44139
2R	12148290	2R_12148290_SNP [dm3] 2R_16260785_SNP [dm6]	A	T	5.146e^-6	0.888	UPSTREAM CngA INTERGENIC
3L	1402237	3L_1402237_SNP [dm3] 3L_1402237_SNP [dm6]	G	A	5.436e^-6	0.888	DOWNSTREAM tRNA:E4:62Ad & 2 others INTRON Ptp61F	TF binding site mE1_TFBS_HSA
2L	8492891	2L_8492891_SNP [dm3] 2L_8492891_SNP [dm6]	G	A	6.537e^-6	0.888	INTRON Dh31
2L	2424473	2L_2424473_SNP [dm3] 2L_2424473_SNP [dm6]	C	T	6.660e^-6	0.888	UTR_3_PRIME CG9886 UPSTREAM CG44139
2L	2419105	2L_2419105_SNP [dm3] 2L_2419105_SNP [dm6]	T	C	8.805e^-6	0.888	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6930497	3R_6930497_SNP [dm3] 3R_11104775_SNP [dm6]	A	T	9.078e^-6	0.888	INTERGENIC
2L	11198371	2L_11198371_SNP [dm3] 2L_11198371_SNP [dm6]	T	A	9.108e^-6	0.888	INTRON Ca-beta
3L	18913471	3L_18913471_SNP [dm3] 3L_18920371_SNP [dm6]	A	G	1.077e^-5	0.888	UPSTREAM CG18223 DOWNSTREAM CG3819 INTERGENIC
2L	13708418	2L_13708418_SNP [dm3] 2L_13708418_SNP [dm6]	T	C	1.143e^-5	0.888	UTR_5_PRIME CG7311 INTRON CG31814	TF binding site mE1_TFBS_inv
X	10446569	X_10446569_SNP [dm3] X_10552536_SNP [dm6]	G	C	1.188e^-5	0.888	INTRON spri
3R	24476268	3R_24476268_SNP [dm3] 3R_28650546_SNP [dm6]	G	A	1.246e^-5	0.888	UPSTREAM CG31050 INTERGENIC
3L	10829147	3L_10829147_SNP [dm3] 3L_10836047_SNP [dm6]	A	G	1.388e^-5	0.888	INTERGENIC
2L	13082829	2L_13082829_SNP [dm3] 2L_13082829_SNP [dm6]	G	A	1.420e^-5	0.888	INTERGENIC
3R	10966643	3R_10966643_SNP [dm3] 3R_15140921_SNP [dm6]	C	G	1.432e^-5	0.888	SYNONYMOUS_CODING CG3987 UPSTREAM CR45600 DOWNSTREAM GlyS	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16020028	3R_16020028_SNP [dm3] 3R_20194306_SNP [dm6]	C	G	1.535e^-5	0.888	INTERGENIC
3R	23166521	3R_23166521_SNP [dm3] 3R_27340799_SNP [dm6]	C	G	1.564e^-5	0.888	NON_SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10034388	2R_10034388_SNP [dm3] 2R_14146883_SNP [dm6]	A	C	1.590e^-5	0.888	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	2591792	3L_2591792_SNP [dm3] 3L_2591792_SNP [dm6]	G	T	1.601e^-5	0.888	INTRON dos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	14372505	2L_14372505_SNP [dm3] 2L_14372505_SNP [dm6]	A	T	1.602e^-5	0.888	INTERGENIC
2R	9526622	2R_9526622_SNP [dm3] 2R_13639117_SNP [dm6]	A	C	1.744e^-5	0.888	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8492926	2L_8492926_SNP [dm3] 2L_8492926_SNP [dm6]	C	G	1.997e^-5	0.888	INTRON Dh31
X	2662858	X_2662858_SNP [dm3] X_2768825_SNP [dm6]	G	A	2.094e^-5	0.888	INTRON kirre
2L	16185023	2L_16185023_SNP [dm3] 2L_16185023_SNP [dm6]	C	T	2.142e^-5	0.888	SYNONYMOUS_CODING Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1748623	2L_1748623_SNP [dm3] 2L_1748623_SNP [dm6]	G	C	2.259e^-5	0.888	INTRON CG17646
3R	13442613	3R_13442613_SNP [dm3] 3R_17616891_SNP [dm6]	C	G	2.314e^-5	0.888	UPSTREAM tRNA:V3b:90BC INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	6926668	3R_6926668_SNP [dm3] 3R_11100946_SNP [dm6]	A	C	2.359e^-5	0.888	UPSTREAM CR45579 INTERGENIC
2L	14735067	2L_14735067_SNP [dm3] 2L_14735067_SNP [dm6]	T	A	2.452e^-5	0.888	UPSTREAM CG31835 INTERGENIC
2L	2424603	2L_2424603_SNP [dm3] 2L_2424603_SNP [dm6]	G	A	2.482e^-5	0.888	UTR_3_PRIME CG9886 UPSTREAM CG44139
2R	17452514	2R_17452514_SNP [dm3] 2R_21565009_SNP [dm6]	A	G	2.495e^-5	0.888	INTRON CG10440
X	7816116	X_7816116_SNP [dm3] X_7922083_SNP [dm6]	G	A	2.527e^-5	0.888	DOWNSTREAM CG10777 & 1 other INTERGENIC
X	21094842	X_21094842_SNP [dm3] X_21223815_SNP [dm6]	G	C	2.554e^-5	0.888	INTRON CG32521	TF binding site mE1_TFBS_inv
3L	14202312	3L_14202312_SNP [dm3] 3L_14209212_SNP [dm6]	C	T	2.633e^-5	0.888	INTRON nuf
2R	4438449	2R_4438449_SNP [dm3] 2R_8550944_SNP [dm6]	C	A	2.678e^-5	0.888	DOWNSTREAM CG12780 INTERGENIC
2L	11882120	2L_11882120_SNP [dm3] 2L_11882120_SNP [dm6]	G	T	2.684e^-5	0.888	INTRON Pde1c
X	13867075	X_13867075_INS [dm3] X_13973042_INS [dm6]	A	AT	2.702e^-5	0.888	INTRON mamo
X	13867070	X_13867070_SNP [dm3] X_13973037_SNP [dm6]	C	T	2.757e^-5	0.888	INTRON mamo
3L	1402125	3L_1402125_SNP [dm3] 3L_1402125_SNP [dm6]	C	A	2.799e^-5	0.888	DOWNSTREAM tRNA:E4:62Ad & 2 others INTRON Ptp61F	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7582818	2L_7582818_SNP [dm3] 2L_7582818_SNP [dm6]	A	G	2.850e^-5	0.888	NON_SYNONYMOUS_CODING Spn28B
2L	4936358	2L_4936358_SNP [dm3] 2L_4936358_SNP [dm6]	G	A	2.914e^-5	0.888	START_GAINED hoe2 UTR_5_PRIME hoe2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18913570	3L_18913570_SNP [dm3] 3L_18920470_SNP [dm6]	A	T	3.083e^-5	0.888	UTR_3_PRIME CG3819 UPSTREAM CG18223 DOWNSTREAM CG3819
2R	9526621	2R_9526621_SNP [dm3] 2R_13639116_SNP [dm6]	C	A	3.095e^-5	0.888	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12867573	3L_12867573_SNP [dm3] 3L_12874473_SNP [dm6]	C	A	3.108e^-5	0.888	INTERGENIC
3R	9340479	3R_9340479_DEL [dm3] 3R_13514757_DEL [dm6]	TG	C	3.165e^-5	0.888	INTERGENIC
3L	1402123	3L_1402123_SNP [dm3] 3L_1402123_SNP [dm6]	C	T	3.257e^-5	0.888	DOWNSTREAM tRNA:E4:62Ad & 2 others INTRON Ptp61F	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2424903	2L_2424903_SNP [dm3] 2L_2424903_SNP [dm6]	C	T	3.268e^-5	0.888	SYNONYMOUS_CODING CG44139 DOWNSTREAM CG9886
2R	18698182	2R_18698182_SNP [dm3] 2R_22810677_SNP [dm6]	T	A	3.273e^-5	0.888	INTRON stl	TF binding site BDTNP1_TFBS_twi
3R	6926659	3R_6926659_SNP [dm3] 3R_11100937_SNP [dm6]	A	C	3.380e^-5	0.888	UPSTREAM CR45579 INTERGENIC
3R	13442278	3R_13442278_SNP [dm3] 3R_17616556_SNP [dm6]	C	T	3.383e^-5	0.888	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
3R	4822941	3R_4822941_SNP [dm3] 3R_8997219_SNP [dm6]	T	A	3.397e^-5	0.888	UPSTREAM CG11977 INTRON CG31100
X	2662864	X_2662864_SNP [dm3] X_2768831_SNP [dm6]	A	G	3.401e^-5	0.888	INTRON kirre
2R	18801389	2R_18801389_SNP [dm3] 2R_22913866_SNP [dm6]	A	T	3.424e^-5	0.888	INTRON nahoda
3R	4820643	3R_4820643_SNP [dm3] 3R_8994921_SNP [dm6]	C	A	3.466e^-5	0.888	UTR_3_PRIME CG11975 DOWNSTREAM CG31100 & 1 other
3L	1083500	3L_1083500_DEL [dm3] 3L_1083500_DEL [dm6]	AA	A	3.484e^-5	0.888	INTRON bab1	TF binding site BDTNP1_TFBS_dl
2L	11881357	2L_11881357_SNP [dm3] 2L_11881357_SNP [dm6]	C	T	3.488e^-5	0.888	INTRON Pde1c	TF binding site mE1_TFBS_inv
2R	16843949	2R_16843949_SNP [dm3] 2R_20956444_SNP [dm6]	C	T	3.502e^-5	0.888	INTRON hbn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	6930710	3R_6930710_SNP [dm3] 3R_11104988_SNP [dm6]	C	T	3.539e^-5	0.888	INTERGENIC
3R	8241764	3R_8241764_SNP [dm3] 3R_12416042_SNP [dm6]	T	C	3.577e^-5	0.888	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_sens
3R	13443392	3R_13443392_SNP [dm3] 3R_17617670_SNP [dm6]	C	A	3.660e^-5	0.888	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	2896677	X_2896677_SNP [dm3] X_3002644_SNP [dm6]	C	G	3.871e^-5	0.888	INTRON kirre
2R	17452381	2R_17452381_DEL [dm3] 2R_21564876_DEL [dm6]	AGA	A	3.927e^-5	0.888	INTRON CG10440
2L	676520	2L_676520_SNP [dm3] 2L_676520_SNP [dm6]	C	G	3.937e^-5	0.888	INTRON ds
2R	9526623	2R_9526623_INS [dm3] 2R_13639118_INS [dm6]	C	CCCCTGTTTTCC...	3.966e^-5	0.888	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18913506	3L_18913506_DEL [dm3] 3L_18920406_DEL [dm6]	AAAAATAT	A	4.089e^-5	0.888	UPSTREAM CG18223 DOWNSTREAM CG3819 INTERGENIC
2L	13708423	2L_13708423_SNP [dm3] 2L_13708423_SNP [dm6]	G	A	4.119e^-5	0.888	UTR_5_PRIME CG7311 INTRON CG31814	TF binding site mE1_TFBS_inv
3R	21856194	3R_21856194_SNP [dm3] 3R_26030472_SNP [dm6]	T	C	4.123e^-5	0.888	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	10191573	2L_10191573_DEL [dm3] 2L_10191573_DEL [dm6]	AA	T	4.224e^-5	0.888	UPSTREAM CG31874 INTRON Sur
3R	13443391	3R_13443391_SNP [dm3] 3R_17617669_SNP [dm6]	C	A	4.299e^-5	0.888	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	7024371	3L_7024371_SNP [dm3] 3L_7031271_SNP [dm6]	C	T	4.315e^-5	0.888	INTRON Mp
2L	2419042	2L_2419042_SNP [dm3] 2L_2419042_SNP [dm6]	G	T	4.367e^-5	0.888	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_sens
3R	14523254	3R_14523254_SNP [dm3] 3R_18697532_SNP [dm6]	A	T	4.408e^-5	0.888	INTERGENIC
3L	4630663	3L_4630663_SNP [dm3] 3L_4630663_SNP [dm6]	T	G	4.457e^-5	0.888	INTRON axo
3L	290190	3L_290190_SNP [dm3] 3L_290190_SNP [dm6]	T	C	4.589e^-5	0.888	SYNONYMOUS_CODING RhoGEF3
2L	10956638	2L_10956638_SNP [dm3] 2L_10956638_SNP [dm6]	A	G	4.591e^-5	0.888	INTRON dpr2
2L	3178302	2L_3178302_SNP [dm3] 2L_3178302_SNP [dm6]	G	A	4.618e^-5	0.888	INTRON CG34393	TF binding site mE1_TFBS_sens
X	2662880	X_2662880_SNP [dm3] X_2768847_SNP [dm6]	T	A	4.711e^-5	0.888	INTRON kirre
2R	10005281	2R_10005281_SNP [dm3] 2R_14117776_SNP [dm6]	G	C	4.712e^-5	0.888	INTRON Prosap
X	2662875	X_2662875_SNP [dm3] X_2768842_SNP [dm6]	C	T	4.753e^-5	0.888	INTRON kirre
X	5078311	X_5078311_INS [dm3] X_5184278_INS [dm6]	C	CC	4.755e^-5	0.888	INTRON rg & 1 other
3R	23207486	3R_23207486_SNP [dm3] 3R_27381764_SNP [dm6]	C	T	4.795e^-5	0.888	UTR_3_PRIME side INTRON side
2R	16659349	2R_16659349_SNP [dm3] 2R_20771844_SNP [dm6]	C	T	4.832e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	2662877	X_2662877_SNP [dm3] X_2768844_SNP [dm6]	A	T	4.856e^-5	0.888	INTRON kirre
2L	11198388	2L_11198388_SNP [dm3] 2L_11198388_SNP [dm6]	C	T	4.969e^-5	0.888	INTRON Ca-beta
2L	11528870	2L_11528870_DEL [dm3] 2L_11528870_DEL [dm6]	TTT	T	4.984e^-5	0.888	UPSTREAM CG31705 DOWNSTREAM CG31706 INTERGENIC
3L	4496786	3L_4496786_SNP [dm3] 3L_4496786_SNP [dm6]	T	A	5.107e^-5	0.888	DOWNSTREAM CG13721 INTERGENIC	TF binding site mE1_TFBS_inv
2R	18279183	2R_18279183_SNP [dm3] 2R_22391678_SNP [dm6]	T	C	5.117e^-5	0.888	SPLICE_SITE_REGION CG13506 INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7882885	X_7882885_SNP [dm3] X_7988852_SNP [dm6]	T	C	5.274e^-5	0.888	INTERGENIC
2R	18762021	2R_18762021_SNP [dm3] 2R_22874498_SNP [dm6]	A	G	5.325e^-5	0.888	UPSTREAM PIP5K59B DOWNSTREAM CR45469 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4793963	X_4793963_SNP [dm3] X_4899930_SNP [dm6]	A	G	5.366e^-5	0.888	INTRON CG42594
2L	17534394	2L_17534394_SNP [dm3] 2L_17534394_SNP [dm6]	G	C	5.470e^-5	0.888	INTERGENIC
3R	10955682	3R_10955682_SNP [dm3] 3R_15129960_SNP [dm6]	G	T	5.511e^-5	0.888	DOWNSTREAM mir-2493 INTRON CG42788
3R	10855776	3R_10855776_SNP [dm3] 3R_15030054_SNP [dm6]	C	A	5.542e^-5	0.888	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1083512	3L_1083512_SNP [dm3] 3L_1083512_SNP [dm6]	T	C	5.597e^-5	0.888	INTRON bab1	TF binding site BDTNP1_TFBS_dl
2L	14372544	2L_14372544_SNP [dm3] 2L_14372544_SNP [dm6]	T	C	5.660e^-5	0.888	INTERGENIC
2L	10191576	2L_10191576_SNP [dm3] 2L_10191576_SNP [dm6]	T	G	5.661e^-5	0.888	UPSTREAM CG31874 INTRON Sur
2R	11815557	2R_11815557_SNP [dm3] 2R_15928052_SNP [dm6]	T	G	5.710e^-5	0.888	UTR_5_PRIME bdg INTRON bdg
3R	23207459	3R_23207459_SNP [dm3] 3R_27381737_SNP [dm6]	T	C	5.749e^-5	0.888	UTR_3_PRIME side INTRON side
3R	4823841	3R_4823841_SNP [dm3] 3R_8998119_SNP [dm6]	C	T	5.768e^-5	0.888	SYNONYMOUS_CODING CG11977 INTRON CG31100
2R	19097092	2R_19097092_SNP [dm3] 2R_23209569_SNP [dm6]	A	G	5.793e^-5	0.888	DOWNSTREAM LS2 INTERGENIC	TF binding site mE1_TFBS_sens
3L	4051322	3L_4051322_SNP [dm3] 3L_4051322_SNP [dm6]	G	A	5.816e^-5	0.888	INTRON CG1136	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	9589543	X_9589543_SNP [dm3] X_9695510_SNP [dm6]	C	T	5.849e^-5	0.888	INTRON btd	TF binding site BDTNP1_TFBS_dl
3R	13441992	3R_13441992_SNP [dm3] 3R_17616270_SNP [dm6]	C	A	5.851e^-5	0.888	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	13442897	3R_13442897_SNP [dm3] 3R_17617175_SNP [dm6]	A	G	5.855e^-5	0.888	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_zfh1
3R	16020029	3R_16020029_DEL [dm3] 3R_20194307_DEL [dm6]	GCCATCA	G	5.902e^-5	0.888	INTERGENIC
3L	5686199	3L_5686199_SNP [dm3] 3L_5693099_SNP [dm6]	T	G	5.976e^-5	0.888	INTRON sif
2L	2425046	2L_2425046_SNP [dm3] 2L_2425046_SNP [dm6]	C	T	6.092e^-5	0.888	DOWNSTREAM CG9886 & 1 other INTERGENIC
3R	5376183	3R_5376183_SNP [dm3] 3R_9550461_SNP [dm6]	G	T	6.110e^-5	0.888	INTRON mura & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	12330495	2R_12330495_SNP [dm3] 2R_16442990_SNP [dm6]	G	A	6.124e^-5	0.888	UPSTREAM CG4409 INTERGENIC
2R	3175403	2R_3175403_SNP [dm3] 2R_7287898_SNP [dm6]	T	C	6.167e^-5	0.888	INTRON pwn
3R	6926647	3R_6926647_DEL [dm3] 3R_11100925_DEL [dm6]	TTAGAAA	G	6.175e^-5	0.888	UPSTREAM CR45579 INTERGENIC
2L	6793565	2L_6793565_SNP [dm3] 2L_6793565_SNP [dm6]	G	A	6.241e^-5	0.888	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	4178767	2R_4178767_SNP [dm3] 2R_8291262_SNP [dm6]	A	T	6.279e^-5	0.888	INTERGENIC
2R	4398671	2R_4398671_SNP [dm3] 2R_8511166_SNP [dm6]	T	C	6.290e^-5	0.888	INTRON mtt
3R	13443201	3R_13443201_DEL [dm3] 3R_17617479_DEL [dm6]	AC	A	6.310e^-5	0.888	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	10146873	3L_10146873_SNP [dm3] 3L_10153773_SNP [dm6]	A	G	6.335e^-5	0.888	DOWNSTREAM CG8072 INTRON dpr10
3L	9940430	3L_9940430_SNP [dm3] 3L_9947330_SNP [dm6]	G	C	6.388e^-5	0.888	INTRON CG34356
3R	15172277	3R_15172277_SNP [dm3] 3R_19346555_SNP [dm6]	C	A	6.400e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1402051	3L_1402051_DEL [dm3] 3L_1402051_DEL [dm6]	ATAATCTCTA	A	6.502e^-5	0.888	DOWNSTREAM tRNA:E4:62Ad & 2 others INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	3558355	X_3558355_SNP [dm3] X_3664322_SNP [dm6]	G	A	6.536e^-5	0.888	INTRON AstA-R1
X	12344474	X_12344474_SNP [dm3] X_12450441_SNP [dm6]	A	G	6.540e^-5	0.888	INTRON Pkcdelta
3L	12671321	3L_12671321_SNP [dm3] 3L_12678221_SNP [dm6]	T	C	6.550e^-5	0.888	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16618963	2R_16618963_SNP [dm3] 2R_20731458_SNP [dm6]	A	C	6.589e^-5	0.888	UPSTREAM CG13442 INTRON dpr
2R	11423994	2R_11423994_SNP [dm3] 2R_15536489_SNP [dm6]	G	T	6.656e^-5	0.888	SPLICE_SITE_REGION CG30471 INTRON CG30471
3R	20520918	3R_20520918_SNP [dm3] 3R_24695196_SNP [dm6]	A	G	6.666e^-5	0.888	INTRON slo
2L	1747308	2L_1747308_SNP [dm3] 2L_1747308_SNP [dm6]	G	T	6.670e^-5	0.888	INTRON CG17646
3R	15159832	3R_15159832_SNP [dm3] 3R_19334110_SNP [dm6]	T	C	6.772e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	785548	3R_785548_SNP [dm3] 3R_4959826_SNP [dm6]	C	A	6.884e^-5	0.888	INTRON CG2016	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17566265	2L_17566265_SNP [dm3] 2L_17566265_SNP [dm6]	G	C	6.896e^-5	0.888	UPSTREAM mir-124 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	2424590	2L_2424590_SNP [dm3] 2L_2424590_SNP [dm6]	G	A	6.900e^-5	0.888	UTR_3_PRIME CG9886 UPSTREAM CG44139
2L	10607925	2L_10607925_SNP [dm3] 2L_10607925_SNP [dm6]	A	C	6.946e^-5	0.888	INTRON Trim9	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17534548	2L_17534548_SNP [dm3] 2L_17534548_SNP [dm6]	A	T	6.990e^-5	0.888	INTERGENIC
2L	13299627	2L_13299627_SNP [dm3] 2L_13299627_SNP [dm6]	C	T	7.023e^-5	0.888	SYNONYMOUS_CODING CG31729	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2424906	2L_2424906_SNP [dm3] 2L_2424906_SNP [dm6]	A	T	7.061e^-5	0.888	SYNONYMOUS_CODING CG44139 DOWNSTREAM CG9886
X	21093150	X_21093150_DEL [dm3] X_21222123_DEL [dm6]	AATTCATATGATTTTTGGGC...	A	7.067e^-5	0.888	INTRON CG32521
2R	11815752	2R_11815752_SNP [dm3] 2R_15928247_SNP [dm6]	G	A	7.089e^-5	0.888	UTR_5_PRIME bdg INTRON bdg
2R	17788317	2R_17788317_SNP [dm3] 2R_21900812_SNP [dm6]	T	G	7.205e^-5	0.888	INTRON Fili	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9589558	X_9589558_DEL [dm3] X_9695525_DEL [dm6]	TA	T	7.227e^-5	0.888	INTRON btd	TF binding site BDTNP1_TFBS_dl
2R	11885404	2R_11885404_SNP [dm3] 2R_15997899_SNP [dm6]	C	G	7.259e^-5	0.888	SYNONYMOUS_CODING ATPCL	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16548909	3L_16548909_SNP [dm3] 3L_16555809_SNP [dm6]	T	A	7.264e^-5	0.888	INTERGENIC
2L	16800564	2L_16800564_SNP [dm3] 2L_16800564_SNP [dm6]	T	A	7.293e^-5	0.888	INTRON Ugt36Bc
2L	4499503	2L_4499503_SNP [dm3] 2L_4499503_SNP [dm6]	G	A	7.327e^-5	0.888	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	12406762	3R_12406762_SNP [dm3] 3R_16581040_SNP [dm6]	T	C	7.335e^-5	0.888	INTRON Scp2
2L	13257856	2L_13257856_SNP [dm3] 2L_13257856_SNP [dm6]	G	A	7.423e^-5	0.888	SYNONYMOUS_CODING CG31851 DOWNSTREAM CG31728
3R	15091368	3R_15091368_SNP [dm3] 3R_19265646_SNP [dm6]	T	A	7.446e^-5	0.888	INTERGENIC
3L	20872286	3L_20872286_INS [dm3] 3L_20879186_INS [dm6]	A	AA	7.487e^-5	0.888	INTRON CG32432
2R	16622889	2R_16622889_SNP [dm3] 2R_20735384_SNP [dm6]	C	T	7.524e^-5	0.888	INTRON dpr
2L	10288766	2L_10288766_SNP [dm3] 2L_10288766_SNP [dm6]	A	C	7.529e^-5	0.888	NON_SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad
3R	26866715	3R_26866715_SNP [dm3] 3R_31040993_SNP [dm6]	T	C	7.593e^-5	0.888	INTRON CanA1
2R	17452459	2R_17452459_SNP [dm3] 2R_21564954_SNP [dm6]	C	T	7.614e^-5	0.888	INTRON CG10440
2L	1745855	2L_1745855_SNP [dm3] 2L_1745855_SNP [dm6]	C	T	7.648e^-5	0.888	SYNONYMOUS_CODING CG17646
2L	14892907	2L_14892907_SNP [dm3] 2L_14892907_SNP [dm6]	G	T	7.649e^-5	0.888	INTERGENIC
X	8122337	X_8122337_DEL [dm3] X_8228304_DEL [dm6]	ATGAAATTA	A	7.678e^-5	0.888	INTRON sdt	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	16800556	2L_16800556_SNP [dm3] 2L_16800556_SNP [dm6]	T	A	7.691e^-5	0.888	INTRON Ugt36Bc
3L	14203755	3L_14203755_SNP [dm3] 3L_14210655_SNP [dm6]	C	A	7.890e^-5	0.888	INTRON nuf
3L	16553942	3L_16553942_SNP [dm3] 3L_16560842_SNP [dm6]	C	A	7.929e^-5	0.888	INTERGENIC
3R	5376033	3R_5376033_SNP [dm3] 3R_9550311_SNP [dm6]	A	G	7.989e^-5	0.888	INTRON mura & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18696682	3L_18696682_SNP [dm3] 3L_18703582_SNP [dm6]	G	T	7.995e^-5	0.888	INTERGENIC
X	4793688	X_4793688_SNP [dm3] X_4899655_SNP [dm6]	G	C	8.012e^-5	0.888	INTRON CG42594	TF binding site mE1_TFBS_HSA
2R	2354330	2R_2354330_SNP [dm3] 2R_6466825_SNP [dm6]	C	T	8.031e^-5	0.888	INTERGENIC	transposable element FlyBase
3L	12616606	3L_12616606_SNP [dm3] 3L_12623506_SNP [dm6]	C	A	8.061e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	15450923	X_15450923_SNP [dm3] X_15556890_SNP [dm6]	A	G	8.181e^-5	0.888	UPSTREAM CG42300 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16800573	2L_16800573_SNP [dm3] 2L_16800573_SNP [dm6]	A	T	8.197e^-5	0.888	INTRON Ugt36Bc	TF binding site mE1_TFBS_cad
2L	7675045	2L_7675045_SNP [dm3] 2L_7675045_SNP [dm6]	G	A	8.199e^-5	0.888	UTR_5_PRIME Slob INTRON Myo28B1
2L	2419753	2L_2419753_SNP [dm3] 2L_2419753_SNP [dm6]	A	G	8.239e^-5	0.888	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
3L	12369478	3L_12369478_SNP [dm3] 3L_12376378_SNP [dm6]	T	G	8.272e^-5	0.888	INTRON Ncc69
3L	12773772	3L_12773772_SNP [dm3] 3L_12780672_SNP [dm6]	C	A	8.299e^-5	0.888	NON_SYNONYMOUS_CODING CG10969 UPSTREAM CG17666
3L	2641281	3L_2641281_SNP [dm3] 3L_2641281_SNP [dm6]	T	G	8.371e^-5	0.888	UTR_3_PRIME CG42245 & 1 other DOWNSTREAM CG14949
3R	13442768	3R_13442768_SNP [dm3] 3R_17617046_SNP [dm6]	A	G	8.397e^-5	0.888	UPSTREAM tRNA:V3b:90BC INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	13442769	3R_13442769_SNP [dm3] 3R_17617047_SNP [dm6]	A	C	8.397e^-5	0.888	UPSTREAM tRNA:V3b:90BC INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	13442771	3R_13442771_SNP [dm3] 3R_17617049_SNP [dm6]	T	C	8.397e^-5	0.888	UPSTREAM tRNA:V3b:90BC INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	11400454	2L_11400454_SNP [dm3] 2L_11400454_SNP [dm6]	G	T	8.426e^-5	0.888	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	16977067	X_16977067_SNP [dm3] X_17083034_SNP [dm6]	C	T	8.504e^-5	0.888	NON_SYNONYMOUS_CODING CG4955 INTRON CG8945
3R	26219628	3R_26219628_SNP [dm3] 3R_30393906_SNP [dm6]	A	T	8.509e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15303441	2L_15303441_SNP [dm3] 2L_15303441_SNP [dm6]	C	T	8.528e^-5	0.888	INTERGENIC
2R	15822373	2R_15822373_SNP [dm3] 2R_19934868_SNP [dm6]	G	T	8.553e^-5	0.888	EXON CR44627
3R	13442957	3R_13442957_SNP [dm3] 3R_17617235_SNP [dm6]	G	A	8.668e^-5	0.888	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_zfh1
3R	18703549	3R_18703549_SNP [dm3] 3R_22877827_SNP [dm6]	A	G	8.709e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8492879	2L_8492879_INS [dm3] 2L_8492879_INS [dm6]	T	TGGT	8.852e^-5	0.888	INTRON Dh31
2L	10943655	2L_10943655_SNP [dm3] 2L_10943655_SNP [dm6]	A	T	8.855e^-5	0.888	UPSTREAM CR44492 & 1 other INTRON dpr2
3L	5523789	3L_5523789_SNP [dm3] 3L_5530689_SNP [dm6]	T	C	8.881e^-5	0.888	INTERGENIC
X	13867065	X_13867065_SNP [dm3] X_13973032_SNP [dm6]	C	T	8.911e^-5	0.888	INTRON mamo
3R	14802163	3R_14802163_SNP [dm3] 3R_18976441_SNP [dm6]	A	C	8.961e^-5	0.888	UTR_3_PRIME CG43732 & 1 other DOWNSTREAM CG42613
3L	4528969	3L_4528969_SNP [dm3] 3L_4528969_SNP [dm6]	A	C	9.017e^-5	0.888	INTRON Tie
3R	934529	3R_934529_SNP [dm3] 3R_5108807_SNP [dm6]	C	T	9.018e^-5	0.888	NON_SYNONYMOUS_CODING CG43131	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11833661	2R_11833661_SNP [dm3] 2R_15946156_SNP [dm6]	A	C	9.029e^-5	0.888	SYNONYMOUS_CODING Cyp4aa1 DOWNSTREAM mir-4919 & 1 other	TF binding site mE1_TFBS_sens
2L	13708932	2L_13708932_SNP [dm3] 2L_13708932_SNP [dm6]	G	T	9.110e^-5	0.888	INTRON CG31814 & 1 other	TF binding site mE1_TFBS_inv
3L	11702544	3L_11702544_SNP [dm3] 3L_11709444_SNP [dm6]	A	G	9.131e^-5	0.888	UPSTREAM CG11658 INTRON Ccdc56 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13443337	3R_13443337_SNP [dm3] 3R_17617615_SNP [dm6]	G	C	9.193e^-5	0.888	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	11198395	2L_11198395_SNP [dm3] 2L_11198395_SNP [dm6]	C	A	9.285e^-5	0.888	INTRON Ca-beta
2L	16185315	2L_16185315_SNP [dm3] 2L_16185315_SNP [dm6]	A	C	9.466e^-5	0.888	SYNONYMOUS_CODING Ca-alpha1D	TF binding site mE1_TFBS_cad
3R	5376062	3R_5376062_SNP [dm3] 3R_9550340_SNP [dm6]	C	A	9.554e^-5	0.888	INTRON mura & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7672623	2L_7672623_SNP [dm3] 2L_7672623_SNP [dm6]	C	T	9.711e^-5	0.888	INTRON Slob & 1 other
2L	14372480	2L_14372480_SNP [dm3] 2L_14372480_SNP [dm6]	C	T	9.799e^-5	0.888	INTERGENIC
X	9586639	X_9586639_SNP [dm3] X_9692606_SNP [dm6]	A	T	9.914e^-5	0.888	UPSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2L	7224373	2L_7224373_SNP [dm3] 2L_7224373_SNP [dm6]	C	A	9.943e^-5	0.888	UTR_3_PRIME Ndae1 INTRON Ndae1
2R	17836522	2R_17836522_DEL [dm3] 2R_21949017_DEL [dm6]	AGGAAAGGGTTCA...	A	9.996e^-5	0.888	INTERGENIC
3R	18129439	3R_18129439_SNP [dm3] 3R_22303717_SNP [dm6]	T	C	1.001e^-4	0.888	UTR_3_PRIME CG7084
X	4793808	X_4793808_SNP [dm3] X_4899775_SNP [dm6]	T	C	1.002e^-4	0.888	INTRON CG42594
2L	3960324	2L_3960324_SNP [dm3] 2L_3960324_SNP [dm6]	G	T	1.007e^-4	0.888	INTRON fred
3R	6926656	3R_6926656_SNP [dm3] 3R_11100934_SNP [dm6]	C	G	1.010e^-4	0.888	UPSTREAM CR45579 INTERGENIC
3L	1352732	3L_1352732_SNP [dm3] 3L_1352732_SNP [dm6]	T	C	1.011e^-4	0.888	UTR_3_PRIME 312 DOWNSTREAM 312 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	12406770	3R_12406770_SNP [dm3] 3R_16581048_SNP [dm6]	C	T	1.014e^-4	0.888	INTRON Scp2
3L	1277524	3L_1277524_SNP [dm3] 3L_1277524_SNP [dm6]	C	T	1.029e^-4	0.888	INTRON CG32333
2L	11528876	2L_11528876_SNP [dm3] 2L_11528876_SNP [dm6]	A	G	1.033e^-4	0.888	UPSTREAM CG31705 DOWNSTREAM CG31706 INTERGENIC
3R	10433683	3R_10433683_SNP [dm3] 3R_14607961_SNP [dm6]	C	G	1.040e^-4	0.888	UTR_3_PRIME stumps
X	9589889	X_9589889_SNP [dm3] X_9695856_SNP [dm6]	T	C	1.043e^-4	0.888	SYNONYMOUS_CODING btd	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	1357764	2R_1357764_SNP [dm3] 2R_5470259_SNP [dm6]	T	A	1.055e^-4	0.888	INTRON CG30440	transposable element FlyBase
3L	10292357	3L_10292357_SNP [dm3] 3L_10299257_SNP [dm6]	T	C	1.056e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18760753	2R_18760753_SNP [dm3] 2R_22873230_SNP [dm6]	C	T	1.064e^-4	0.888	INTRON CG13532	TF binding site mE1_TFBS_chinmo
3L	14205826	3L_14205826_DEL [dm3] 3L_14212726_DEL [dm6]	TTTTGTCTTTTGGCATTGTT...	T	1.067e^-4	0.888	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3R	13441996	3R_13441996_SNP [dm3] 3R_17616274_SNP [dm6]	G	A	1.073e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
X	9586373	X_9586373_DEL [dm3] X_9692340_DEL [dm6]	CAAAC	C	1.087e^-4	0.888	INTRON CR44016	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	13867079	X_13867079_DEL [dm3] X_13973046_DEL [dm6]	GGTGATCTCATA...	G	1.094e^-4	0.888	INTRON mamo
3R	4820292	3R_4820292_SNP [dm3] 3R_8994570_SNP [dm6]	T	C	1.096e^-4	0.888	SYNONYMOUS_CODING CG11975 DOWNSTREAM CG31100
X	8152075	X_8152075_SNP [dm3] X_8258042_SNP [dm6]	A	T	1.096e^-4	0.888	INTRON CG1632	TF binding site BDTNP1_TFBS_dl
2R	18052463	2R_18052463_SNP [dm3] 2R_22164958_SNP [dm6]	C	T	1.098e^-4	0.888	SYNONYMOUS_CODING a UPSTREAM CG34206
X	9587340	X_9587340_SNP [dm3] X_9693307_SNP [dm6]	A	T	1.101e^-4	0.888	UPSTREAM CR44016 & 1 other INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16891461	3L_16891461_SNP [dm3] 3L_16898361_SNP [dm6]	T	A	1.104e^-4	0.888	INTRON Lmpt
3L	16891469	3L_16891469_SNP [dm3] 3L_16898369_SNP [dm6]	A	G	1.104e^-4	0.888	INTRON Lmpt
3L	16891472	3L_16891472_SNP [dm3] 3L_16898372_SNP [dm6]	A	T	1.104e^-4	0.888	INTRON Lmpt
3L	12867574	3L_12867574_SNP [dm3] 3L_12874474_SNP [dm6]	C	T	1.111e^-4	0.888	INTERGENIC
2R	17452414	2R_17452414_SNP [dm3] 2R_21564909_SNP [dm6]	T	A	1.114e^-4	0.888	INTRON CG10440
X	13464129	X_13464129_DEL [dm3] X_13570096_DEL [dm6]	GG	C	1.114e^-4	0.888	INTRON Tango13
3L	16893617	3L_16893617_SNP [dm3] 3L_16900517_SNP [dm6]	A	G	1.115e^-4	0.888	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl
2L	13188975	2L_13188975_SNP [dm3] 2L_13188975_SNP [dm6]	C	T	1.120e^-4	0.888	NON_SYNONYMOUS_CODING CG16974	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4251343	3L_4251343_SNP [dm3] 3L_4251343_SNP [dm6]	C	T	1.131e^-4	0.888	SYNONYMOUS_CODING ago	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	2424676	2L_2424676_DEL [dm3] 2L_2424676_DEL [dm6]	AA	A	1.134e^-4	0.888	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
3L	670528	3L_670528_SNP [dm3] 3L_670528_SNP [dm6]	C	T	1.143e^-4	0.888	INTERGENIC
2L	16852742	2L_16852742_SNP [dm3] 2L_16852742_SNP [dm6]	T	C	1.144e^-4	0.888	UPSTREAM CG31810 DOWNSTREAM CG31809 INTERGENIC
3L	16452175	3L_16452175_SNP [dm3] 3L_16459075_SNP [dm6]	C	A	1.146e^-4	0.888	INTRON CG33158
3L	11170952	3L_11170952_SNP [dm3] 3L_11177852_SNP [dm6]	C	T	1.154e^-4	0.888	UTR_3_PRIME GlcAT-P DOWNSTREAM CG14142
3R	10955290	3R_10955290_SNP [dm3] 3R_15129568_SNP [dm6]	C	T	1.161e^-4	0.888	INTRON CG42788
2R	18760759	2R_18760759_SNP [dm3] 2R_22873236_SNP [dm6]	A	T	1.166e^-4	0.888	INTRON CG13532	TF binding site mE1_TFBS_chinmo
3R	9710925	3R_9710925_SNP [dm3] 3R_13885203_SNP [dm6]	A	G	1.167e^-4	0.888	INTERGENIC
2R	19487745	2R_19487745_SNP [dm3] 2R_23600222_SNP [dm6]	T	G	1.172e^-4	0.888	SYNONYMOUS_CODING CG42559 UTR_5_PRIME CG42560 UPSTREAM CG42560 DOWNSTREAM apt & 2 others
2L	12360701	2L_12360701_SNP [dm3] 2L_12360701_SNP [dm6]	C	T	1.175e^-4	0.888	INTRON bru-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8240978	3R_8240978_SNP [dm3] 3R_12415256_SNP [dm6]	C	T	1.180e^-4	0.888	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_sens
2L	1421912	2L_1421912_SNP [dm3] 2L_1421912_SNP [dm6]	G	A	1.185e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19535680	2R_19535680_SNP [dm3] 2R_23648157_SNP [dm6]	G	A	1.190e^-4	0.888	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17060431	2L_17060431_SNP [dm3] 2L_17060431_SNP [dm6]	C	T	1.193e^-4	0.888	INTERGENIC
X	4793974	X_4793974_SNP [dm3] X_4899941_SNP [dm6]	C	T	1.195e^-4	0.888	INTRON CG42594
3L	15767689	3L_15767689_SNP [dm3] 3L_15774589_SNP [dm6]	A	G	1.198e^-4	0.888	INTERGENIC
2L	19598487	2L_19598487_SNP [dm3] 2L_19598487_SNP [dm6]	T	C	1.202e^-4	0.888	INTRON Lar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1083495	3L_1083495_SNP [dm3] 3L_1083495_SNP [dm6]	T	A	1.206e^-4	0.888	INTRON bab1	TF binding site BDTNP1_TFBS_dl
2L	6793559	2L_6793559_SNP [dm3] 2L_6793559_SNP [dm6]	C	T	1.210e^-4	0.888	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6793581	2L_6793581_SNP [dm3] 2L_6793581_SNP [dm6]	A	C	1.210e^-4	0.888	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	19487801	2R_19487801_SNP [dm3] 2R_23600278_SNP [dm6]	A	T	1.211e^-4	0.888	UPSTREAM CG42560 DOWNSTREAM apt & 2 others INTRON CG42559 & 1 other
X	2234194	X_2234194_SNP [dm3] X_2340161_SNP [dm6]	G	A	1.220e^-4	0.888	UTR_5_PRIME phl UPSTREAM phl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	11974442	2L_11974442_SNP [dm3] 2L_11974442_SNP [dm6]	A	T	1.226e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16239336	3R_16239336_SNP [dm3] 3R_20413614_SNP [dm6]	A	G	1.228e^-4	0.888	INTRON Gfrl
2L	13389537	2L_13389537_SNP [dm3] 2L_13389537_SNP [dm6]	C	T	1.235e^-4	0.888	SYNONYMOUS_CODING CG7099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1655664	2L_1655664_SNP [dm3] 2L_1655664_SNP [dm6]	C	G	1.253e^-4	0.888	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
2R	16730343	2R_16730343_SNP [dm3] 2R_20842838_SNP [dm6]	A	G	1.257e^-4	0.888	INTERGENIC
3R	9550751	3R_9550751_SNP [dm3] 3R_13725029_SNP [dm6]	T	A	1.261e^-4	0.888	INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2L	6793571	2L_6793571_SNP [dm3] 2L_6793571_SNP [dm6]	T	C	1.264e^-4	0.888	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	2424634	2L_2424634_SNP [dm3] 2L_2424634_SNP [dm6]	C	T	1.266e^-4	0.888	UTR_3_PRIME CG9886 UPSTREAM CG44139
3L	12023299	3L_12023299_SNP [dm3] 3L_12030199_SNP [dm6]	C	G	1.267e^-4	0.888	INTRON rols	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6922903	2L_6922903_SNP [dm3] 2L_6922903_SNP [dm6]	C	T	1.269e^-4	0.888	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18698047	2R_18698047_SNP [dm3] 2R_22810542_SNP [dm6]	G	A	1.271e^-4	0.888	INTRON stl	TF binding site BDTNP1_TFBS_twi
3L	13930657	3L_13930657_SNP [dm3] 3L_13937557_SNP [dm6]	C	T	1.272e^-4	0.888	INTERGENIC
2L	8451044	2L_8451044_DEL [dm3] 2L_8451044_DEL [dm6]	TAATAATT	T	1.278e^-4	0.888	UTR_5_PRIME fu12 INTRON fu12
X	9283746	X_9283746_SNP [dm3] X_9389713_SNP [dm6]	G	A	1.284e^-4	0.888	INTRON mgl
X	22209741	X_22209741_INS [dm3] X_22807905_INS [dm6]	G	GCTCCCGAA	1.284e^-4	0.888	UPSTREAM CR45464 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18762108	2R_18762108_SNP [dm3] 2R_22874585_SNP [dm6]	C	T	1.288e^-4	0.888	UPSTREAM PIP5K59B DOWNSTREAM CG13532 EXON CR45469	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1277413	3L_1277413_SNP [dm3] 3L_1277413_SNP [dm6]	G	A	1.294e^-4	0.888	INTRON CG32333
3L	9043198	3L_9043198_SNP [dm3] 3L_9050098_SNP [dm6]	A	G	1.296e^-4	0.888	SYNONYMOUS_CODING Argk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5223965	3L_5223965_SNP [dm3] 3L_5230865_SNP [dm6]	G	A	1.304e^-4	0.888	INTRON shep
3R	9739838	3R_9739838_SNP [dm3] 3R_13914116_SNP [dm6]	T	A	1.304e^-4	0.888	INTERGENIC
2R	12469953	2R_12469953_SNP [dm3] 2R_16582448_SNP [dm6]	G	A	1.308e^-4	0.888	INTRON Cdk4 EXON CR44375	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	11744315	2L_11744315_SNP [dm3] 2L_11744315_SNP [dm6]	T	C	1.310e^-4	0.888	UTR_3_PRIME Vha100-5 DOWNSTREAM Vha100-5 EXON CR44144
2L	9810293	2L_9810293_SNP [dm3] 2L_9810293_SNP [dm6]	A	G	1.315e^-4	0.888	INTRON nAChRalpha6
3L	5525049	3L_5525049_SNP [dm3] 3L_5531949_SNP [dm6]	T	G	1.317e^-4	0.888	INTERGENIC
X	11201076	X_11201076_SNP [dm3] X_11307043_SNP [dm6]	T	C	1.319e^-4	0.888	INTERGENIC
X	20838659	X_20838659_SNP [dm3] X_20967632_SNP [dm6]	A	G	1.320e^-4	0.888	INTERGENIC
2L	5604044	2L_5604044_SNP [dm3] 2L_5604044_SNP [dm6]	C	A	1.322e^-4	0.888	INTRON CG14010
2L	14732462	2L_14732462_SNP [dm3] 2L_14732462_SNP [dm6]	A	C	1.330e^-4	0.89	DOWNSTREAM CR44857 INTERGENIC
2L	13935209	2L_13935209_INS [dm3] 2L_13935209_INS [dm6]	A	AAGT	1.347e^-4	0.899	UPSTREAM CG16885 INTRON Ance-3
2L	10656745	2L_10656745_SNP [dm3] 2L_10656745_SNP [dm6]	C	T	1.352e^-4	0.899	UPSTREAM CR45692 INTERGENIC
2R	14985501	2R_14985501_SNP [dm3] 2R_19097996_SNP [dm6]	C	T	1.376e^-4	0.908	INTRON 5-HT1A
X	7693651	X_7693651_SNP [dm3] X_7799618_SNP [dm6]	G	A	1.381e^-4	0.908	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10236685	2L_10236685_SNP [dm3] 2L_10236685_SNP [dm6]	C	A	1.393e^-4	0.908	INTRON mthl15	TF binding site BDTNP1_TFBS_twi
2L	487123	2L_487123_SNP [dm3] 2L_487123_SNP [dm6]	C	T	1.400e^-4	0.908	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	14534645	3R_14534645_INS [dm3] 3R_18708923_INS [dm6]	A	AT	1.406e^-4	0.908	INTRON VAChT & 1 other
2L	12125855	2L_12125855_SNP [dm3] 2L_12125855_SNP [dm6]	G	C	1.409e^-4	0.908	SYNONYMOUS_CODING CG17211
2L	3235361	2L_3235361_SNP [dm3] 2L_3235361_SNP [dm6]	T	C	1.425e^-4	0.908	INTERGENIC
2L	9983874	2L_9983874_SNP [dm3] 2L_9983874_SNP [dm6]	A	C	1.429e^-4	0.908	UPSTREAM bib EXON CR13130	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	9855203	2L_9855203_SNP [dm3] 2L_9855203_SNP [dm6]	T	G	1.429e^-4	0.908	INTRON nAChRalpha6
X	3261617	X_3261617_SNP [dm3] X_3367584_SNP [dm6]	T	C	1.435e^-4	0.908	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14206001	3L_14206001_SNP [dm3] 3L_14212901_SNP [dm6]	A	G	1.436e^-4	0.908	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	9855206	2L_9855206_SNP [dm3] 2L_9855206_SNP [dm6]	C	T	1.440e^-4	0.908	INTRON nAChRalpha6
2L	16800484	2L_16800484_SNP [dm3] 2L_16800484_SNP [dm6]	A	G	1.440e^-4	0.908	NON_SYNONYMOUS_CODING Ugt36Bc
2R	11423954	2R_11423954_SNP [dm3] 2R_15536449_SNP [dm6]	A	G	1.442e^-4	0.908	INTRON CG30471
X	19954473	X_19954473_INS [dm3] X_20060440_INS [dm6]	G	GAC	1.452e^-4	0.908	INTRON Dop2R
3L	16417249	3L_16417249_SNP [dm3] 3L_16424149_SNP [dm6]	A	T	1.455e^-4	0.908	INTRON CG33158 & 1 other
3L	2956985	3L_2956985_SNP [dm3] 3L_2956985_SNP [dm6]	C	T	1.460e^-4	0.908	INTRON Shab
X	18047973	X_18047973_SNP [dm3] X_18153940_SNP [dm6]	T	G	1.464e^-4	0.908	INTERGENIC
X	7903375	X_7903375_SNP [dm3] X_8009342_SNP [dm6]	T	C	1.466e^-4	0.908	INTRON Tbh
3L	1705363	3L_1705363_SNP [dm3] 3L_1705363_SNP [dm6]	G	A	1.475e^-4	0.908	INTRON CG7991
3L	14205850	3L_14205850_SNP [dm3] 3L_14212750_SNP [dm6]	T	A	1.477e^-4	0.908	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3L	13929248	3L_13929248_SNP [dm3] 3L_13936148_SNP [dm6]	A	G	1.477e^-4	0.908	INTERGENIC	TF binding site mE1_TFBS_cad
2L	7582875	2L_7582875_SNP [dm3] 2L_7582875_SNP [dm6]	C	T	1.491e^-4	0.908	INTRON Spn28B
3R	14431218	3R_14431218_SNP [dm3] 3R_18605496_SNP [dm6]	G	A	1.495e^-4	0.908	INTRON qin & 1 other
X	9584618	X_9584618_SNP [dm3] X_9690585_SNP [dm6]	C	T	1.502e^-4	0.908	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	9728038	3R_9728038_SNP [dm3] 3R_13902316_SNP [dm6]	T	G	1.503e^-4	0.908	NON_SYNONYMOUS_CODING ems	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5525091	3L_5525091_SNP [dm3] 3L_5531991_SNP [dm6]	C	T	1.506e^-4	0.908	INTERGENIC
3R	3460573	3R_3460573_SNP [dm3] 3R_7634851_SNP [dm6]	T	A	1.514e^-4	0.908	INTRON CG34127
2R	13477603	2R_13477603_SNP [dm3] 2R_17590098_SNP [dm6]	G	A	1.526e^-4	0.908	SYNONYMOUS_CODING RhoGAP54D UPSTREAM icln	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	3432158	2R_3432158_SNP [dm3] 2R_7544653_SNP [dm6]	C	A	1.531e^-4	0.908	UPSTREAM Corin INTRON Corin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4936350	2L_4936350_SNP [dm3] 2L_4936350_SNP [dm6]	T	G	1.532e^-4	0.908	UTR_5_PRIME hoe2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10958177	2L_10958177_SNP [dm3] 2L_10958177_SNP [dm6]	A	G	1.532e^-4	0.908	INTRON dpr2	TF binding site BDTNP1_TFBS_twi
3R	22943123	3R_22943123_SNP [dm3] 3R_27117401_SNP [dm6]	A	G	1.533e^-4	0.908	SYNONYMOUS_CODING CG5880 UPSTREAM CG6066	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	15052893	2R_15052893_SNP [dm3] 2R_19165388_SNP [dm6]	A	G	1.533e^-4	0.908	START_GAINED CG10737 UTR_5_PRIME CG10737 INTRON CG10737
3R	11973200	3R_11973200_SNP [dm3] 3R_16147478_SNP [dm6]	T	C	1.543e^-4	0.908	UTR_5_PRIME CG5916 UPSTREAM CG5903	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens
4	389051	4_389051_DEL [dm3] 4_368425_DEL [dm6]	AA	A	1.547e^-4	0.908	INTRON Hcf
3L	21189528	3L_21189528_SNP [dm3] 3L_21196428_SNP [dm6]	T	C	1.550e^-4	0.908	UPSTREAM CG34261 DOWNSTREAM CG33054 INTRON park	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	16667721	2R_16667721_SNP [dm3] 2R_20780216_SNP [dm6]	G	A	1.554e^-4	0.908	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC	TF binding site mE1_TFBS_sens
2R	10034531	2R_10034531_DEL [dm3] 2R_14147026_DEL [dm6]	TT	T	1.555e^-4	0.908	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	11424849	3R_11424849_DEL [dm3] 3R_15599127_DEL [dm6]	ATCAACATGAAATGAAAAAT...	A	1.568e^-4	0.913	INTERGENIC
3R	22952376	3R_22952376_SNP [dm3] 3R_27126654_SNP [dm6]	G	T	1.584e^-4	0.919	INTRON CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17115774	2L_17115774_SNP [dm3] 2L_17115774_SNP [dm6]	G	A	1.594e^-4	0.922	INTERGENIC
2R	16622908	2R_16622908_SNP [dm3] 2R_20735403_SNP [dm6]	G	T	1.624e^-4	0.932	INTRON dpr
2L	7224298	2L_7224298_SNP [dm3] 2L_7224298_SNP [dm6]	G	C	1.626e^-4	0.932	UTR_3_PRIME Ndae1 INTRON Ndae1
3R	23000337	3R_23000337_SNP [dm3] 3R_27174615_SNP [dm6]	T	A	1.627e^-4	0.932	SYNONYMOUS_CODING Ser	TF binding site mE1_TFBS_cad
2L	7582857	2L_7582857_SNP [dm3] 2L_7582857_SNP [dm6]	T	C	1.635e^-4	0.934	INTRON Spn28B
2R	9526618	2R_9526618_SNP [dm3] 2R_13639113_SNP [dm6]	C	T	1.639e^-4	0.934	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17250044	X_17250044_SNP [dm3] X_17356011_SNP [dm6]	C	T	1.648e^-4	0.935	INTERGENIC
2L	2419710	2L_2419710_DEL [dm3] 2L_2419710_DEL [dm6]	TG	A	1.660e^-4	0.935	INTRON CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26808899	3R_26808899_SNP [dm3] 3R_30983177_SNP [dm6]	C	A	1.662e^-4	0.935	INTRON 5-HT7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5523685	3L_5523685_SNP [dm3] 3L_5530585_SNP [dm6]	C	T	1.666e^-4	0.935	INTERGENIC
3L	3032130	3L_3032130_SNP [dm3] 3L_3032130_SNP [dm6]	C	T	1.667e^-4	0.935	INTERGENIC
2L	6344311	2L_6344311_SNP [dm3] 2L_6344311_SNP [dm6]	G	A	1.672e^-4	0.935	INTRON Cpr	TF binding site mE1_TFBS_HSA
3L	2591249	3L_2591249_SNP [dm3] 3L_2591249_SNP [dm6]	T	C	1.683e^-4	0.939	UTR_5_PRIME dos INTRON dos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E
2R	12330608	2R_12330608_SNP [dm3] 2R_16443103_SNP [dm6]	A	T	1.693e^-4	0.939	UPSTREAM CG4409 INTERGENIC
3L	18918163	3L_18918163_SNP [dm3] 3L_18925063_SNP [dm6]	T	C	1.693e^-4	0.939	UPSTREAM CG43049 INTRON CG32204
2R	11366981	2R_11366981_DEL [dm3] 2R_15479476_DEL [dm6]	GCG	G	1.723e^-4	0.945	INTRON CG8180	TF binding site mE1_TFBS_HSA
3L	14203876	3L_14203876_INS [dm3] 3L_14210776_INS [dm6]	T	TT	1.723e^-4	0.945	INTRON nuf
2R	11815579	2R_11815579_DEL [dm3] 2R_15928074_DEL [dm6]	ATTGGCAA	A	1.724e^-4	0.945	UTR_5_PRIME bdg INTRON bdg
3L	9916319	3L_9916319_SNP [dm3] 3L_9923219_SNP [dm6]	G	T	1.738e^-4	0.945	INTRON CG34356
2R	10034463	2R_10034463_INS [dm3] 2R_14146958_INS [dm6]	G	TA	1.743e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	9739844	3R_9739844_SNP [dm3] 3R_13914122_SNP [dm6]	T	C	1.763e^-4	0.945	INTERGENIC
3L	3791730	3L_3791730_SNP [dm3] 3L_3791730_SNP [dm6]	G	A	1.772e^-4	0.945	DOWNSTREAM CG32266 INTRON CG32264	TF binding site mE1_TFBS_HSA
3L	9814616	3L_9814616_SNP [dm3] 3L_9821516_SNP [dm6]	C	T	1.783e^-4	0.945	UPSTREAM CG43897 INTRON CG43897
2R	16659539	2R_16659539_SNP [dm3] 2R_20772034_SNP [dm6]	C	A	1.786e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	12388894	X_12388894_SNP [dm3] X_12494861_SNP [dm6]	C	T	1.790e^-4	0.945	SYNONYMOUS_CODING Mks1
3R	10112993	3R_10112993_SNP [dm3] 3R_14287271_SNP [dm6]	A	C	1.798e^-4	0.945	UPSTREAM trx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1742112	2L_1742112_SNP [dm3] 2L_1742112_SNP [dm6]	T	C	1.800e^-4	0.945	INTRON CG17646	TF binding site mE1_TFBS_chinmo
3R	25935548	3R_25935548_INS [dm3] 3R_30109826_INS [dm6]	G	GAT	1.802e^-4	0.945	INTRON sima	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13129556	3L_13129556_SNP [dm3] 3L_13136456_SNP [dm6]	C	A	1.803e^-4	0.945	SPLICE_SITE_REGION CG33262 INTRON CG33262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15236549	3L_15236549_SNP [dm3] 3L_15243449_SNP [dm6]	C	T	1.821e^-4	0.945	DOWNSTREAM Tollo INTERGENIC
2L	13259567	2L_13259567_SNP [dm3] 2L_13259567_SNP [dm6]	G	T	1.825e^-4	0.945	SYNONYMOUS_CODING CG31730 DOWNSTREAM CG31851
2L	2424716	2L_2424716_SNP [dm3] 2L_2424716_SNP [dm6]	A	C	1.826e^-4	0.945	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
2L	696806	2L_696806_SNP [dm3] 2L_696806_SNP [dm6]	G	C	1.828e^-4	0.945	INTRON ds	TF binding site mE1_TFBS_Trl
2L	3861576	2L_3861576_SNP [dm3] 2L_3861576_SNP [dm6]	C	T	1.829e^-4	0.945	INTRON CR44078	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	3837822	3L_3837822_SNP [dm3] 3L_3837822_SNP [dm6]	T	G	1.843e^-4	0.945	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13442827	3R_13442827_SNP [dm3] 3R_17617105_SNP [dm6]	G	A	1.843e^-4	0.945	UPSTREAM tRNA:V3b:90BC INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	18906963	3L_18906963_SNP [dm3] 3L_18913863_SNP [dm6]	T	C	1.848e^-4	0.945	NON_SYNONYMOUS_CODING CG14077
2R	18157692	2R_18157692_SNP [dm3] 2R_22270187_SNP [dm6]	A	C	1.854e^-4	0.945	UPSTREAM dve INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10956241	2L_10956241_SNP [dm3] 2L_10956241_SNP [dm6]	T	C	1.854e^-4	0.945	INTRON dpr2
2R	11693042	2R_11693042_INS [dm3] 2R_15805537_INS [dm6]	C	CCATAC	1.857e^-4	0.945	INTRON tun & 1 other
3L	5525069	3L_5525069_SNP [dm3] 3L_5531969_SNP [dm6]	A	G	1.882e^-4	0.945	INTERGENIC
3L	8317679	3L_8317679_INS [dm3] 3L_8324579_INS [dm6]	G	GAGTATCTG	1.884e^-4	0.945	INTERGENIC
X	11312994	X_11312994_SNP [dm3] X_11418961_SNP [dm6]	C	A	1.885e^-4	0.945	INTERGENIC
2L	14732351	2L_14732351_SNP [dm3] 2L_14732351_SNP [dm6]	A	T	1.889e^-4	0.945	DOWNSTREAM CR44857 INTERGENIC
3L	5223862	3L_5223862_SNP [dm3] 3L_5230762_SNP [dm6]	G	A	1.890e^-4	0.945	INTRON shep
2L	2256587	2L_2256587_SNP [dm3] 2L_2256587_SNP [dm6]	C	T	1.895e^-4	0.945	INTERGENIC
2L	2424610	2L_2424610_SNP [dm3] 2L_2424610_SNP [dm6]	C	T	1.898e^-4	0.945	UTR_3_PRIME CG9886 UPSTREAM CG44139
3L	13646673	3L_13646673_SNP [dm3] 3L_13653573_SNP [dm6]	G	A	1.898e^-4	0.945	INTRON bru-3	TF binding site mE1_TFBS_HSA
3L	11314076	3L_11314076_SNP [dm3] 3L_11320976_SNP [dm6]	T	G	1.902e^-4	0.945	SYNONYMOUS_CODING CG6168
3R	9728125	3R_9728125_SNP [dm3] 3R_13902403_SNP [dm6]	C	T	1.909e^-4	0.945	SYNONYMOUS_CODING ems	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14968644	3R_14968644_SNP [dm3] 3R_19142922_SNP [dm6]	T	C	1.910e^-4	0.945	INTRON Ppcs
2R	19369015	2R_19369015_SNP [dm3] 2R_23481492_SNP [dm6]	G	C	1.921e^-4	0.945	SYNONYMOUS_CODING CG43795
3R	12428177	3R_12428177_INS [dm3] 3R_16602455_INS [dm6]	T	TTGGTGT	1.926e^-4	0.945	INTRON CG10345
3L	4509511	3L_4509511_SNP [dm3] 3L_4509511_SNP [dm6]	T	C	1.933e^-4	0.945	INTERGENIC
2L	7213785	2L_7213785_SNP [dm3] 2L_7213785_SNP [dm6]	A	G	1.936e^-4	0.945	INTRON CG13784	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9983872	2L_9983872_SNP [dm3] 2L_9983872_SNP [dm6]	C	T	1.939e^-4	0.945	UPSTREAM bib EXON CR13130	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	22429095	3R_22429095_INS [dm3] 3R_26603373_INS [dm6]	T	TGAATT	1.940e^-4	0.945	UTR_3_PRIME scrib INTRON scrib
3R	22829198	3R_22829198_SNP [dm3] 3R_27003476_SNP [dm6]	A	G	1.951e^-4	0.945	SYNONYMOUS_CODING CG6296 DOWNSTREAM CG31077 INTRON RYa-R
X	4793948	X_4793948_SNP [dm3] X_4899915_SNP [dm6]	G	A	1.958e^-4	0.945	INTRON CG42594
2L	1905193	2L_1905193_SNP [dm3] 2L_1905193_SNP [dm6]	C	T	1.971e^-4	0.945	INTRON CG7337
2L	11833910	2L_11833910_SNP [dm3] 2L_11833910_SNP [dm6]	T	C	1.975e^-4	0.945	UPSTREAM CG45011 & 1 other INTRON Pde1c
2R	19369203	2R_19369203_SNP [dm3] 2R_23481680_SNP [dm6]	C	T	1.982e^-4	0.945	INTRON CG43795
2R	17452581	2R_17452581_DEL [dm3] 2R_21565076_DEL [dm6]	TT	T	1.984e^-4	0.945	INTRON CG10440
2R	9689492	2R_9689492_SNP [dm3] 2R_13801987_SNP [dm6]	T	C	1.989e^-4	0.945	INTRON Cpr50Cb
3R	22134668	3R_22134668_SNP [dm3] 3R_26308946_SNP [dm6]	T	G	1.994e^-4	0.945	INTERGENIC
2L	12541965	2L_12541965_SNP [dm3] 2L_12541965_SNP [dm6]	G	C	1.999e^-4	0.945	INTRON bun
3L	8685381	3L_8685381_SNP [dm3] 3L_8692281_SNP [dm6]	T	A	2.000e^-4	0.945	UPSTREAM CR44526 INTERGENIC	TF binding site mE1_TFBS_cad
X	11312690	X_11312690_SNP [dm3] X_11418657_SNP [dm6]	A	G	2.001e^-4	0.945	INTERGENIC
3R	12421891	3R_12421891_SNP [dm3] 3R_16596169_SNP [dm6]	T	C	2.019e^-4	0.945	SYNONYMOUS_CODING CG14892 DOWNSTREAM CG10345	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	2424787	2L_2424787_DEL [dm3] 2L_2424787_DEL [dm6]	GTGGACTGA	G	2.020e^-4	0.945	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
2L	6568344	2L_6568344_SNP [dm3] 2L_6568344_SNP [dm6]	A	T	2.022e^-4	0.945	DOWNSTREAM CG11319 INTERGENIC
2L	17128337	2L_17128337_SNP [dm3] 2L_17128337_SNP [dm6]	A	T	2.026e^-4	0.945	INTERGENIC
2R	10009183	2R_10009183_SNP [dm3] 2R_14121678_SNP [dm6]	C	G	2.029e^-4	0.945	INTRON Prosap	TF binding site mE1_TFBS_chinmo
3R	15404350	3R_15404350_SNP [dm3] 3R_19578628_SNP [dm6]	G	T	2.033e^-4	0.945	INTRON Dys
3L	385395	3L_385395_SNP [dm3] 3L_385395_SNP [dm6]	G	A	2.042e^-4	0.945	INTRON trh
2L	12504432	2L_12504432_SNP [dm3] 2L_12504432_SNP [dm6]	A	G	2.042e^-4	0.945	UTR_5_PRIME bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	17452494	2R_17452494_SNP [dm3] 2R_21564989_SNP [dm6]	G	A	2.044e^-4	0.945	INTRON CG10440
3R	6930453	3R_6930453_DEL [dm3] 3R_11104731_DEL [dm6]	CC	C	2.049e^-4	0.945	INTERGENIC
2R	19445685	2R_19445685_SNP [dm3] 2R_23558162_SNP [dm6]	G	C	2.055e^-4	0.945	SYNONYMOUS_CODING ItgalphaPS5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14732235	2L_14732235_SNP [dm3] 2L_14732235_SNP [dm6]	G	T	2.056e^-4	0.945	DOWNSTREAM CR44857 INTERGENIC
3R	12628385	3R_12628385_SNP [dm3] 3R_16802663_SNP [dm6]	T	C	2.057e^-4	0.945	DOWNSTREAM CR45751 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	13658949	2L_13658949_SNP [dm3] 2L_13658949_SNP [dm6]	A	T	2.079e^-4	0.945	INTERGENIC
3R	21901129	3R_21901129_SNP [dm3] 3R_26075407_SNP [dm6]	A	C	2.079e^-4	0.945	INTERGENIC
2L	5887941	2L_5887941_SNP [dm3] 2L_5887941_SNP [dm6]	T	G	2.083e^-4	0.945	UPSTREAM CR44578 INTRON CR44577
3L	3835936	3L_3835936_DEL [dm3] 3L_3835936_DEL [dm6]	AA	A	2.091e^-4	0.945	INTRON enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15504374	2R_15504374_SNP [dm3] 2R_19616869_SNP [dm6]	A	T	2.096e^-4	0.945	INTRON sm
2L	2522431	2L_2522431_SNP [dm3] 2L_2522431_SNP [dm6]	G	A	2.096e^-4	0.945	INTERGENIC
3L	11702080	3L_11702080_SNP [dm3] 3L_11708980_SNP [dm6]	T	C	2.097e^-4	0.945	UTR_5_PRIME Ccdc56 & 1 other UPSTREAM CG11658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5223870	3L_5223870_SNP [dm3] 3L_5230770_SNP [dm6]	T	C	2.116e^-4	0.945	INTRON shep
3R	15173532	3R_15173532_SNP [dm3] 3R_19347810_SNP [dm6]	A	G	2.121e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4823309	3R_4823309_SNP [dm3] 3R_8997587_SNP [dm6]	G	T	2.125e^-4	0.945	UPSTREAM CG11977 INTRON CG31100
2R	16310981	2R_16310981_SNP [dm3] 2R_20423476_SNP [dm6]	T	C	2.126e^-4	0.945	UPSTREAM CG12484 INTERGENIC
2R	16824783	2R_16824783_SNP [dm3] 2R_20937278_SNP [dm6]	A	G	2.159e^-4	0.945	DOWNSTREAM Rx INTERGENIC
2L	9656998	2L_9656998_SNP [dm3] 2L_9656998_SNP [dm6]	T	C	2.166e^-4	0.945	SYNONYMOUS_CODING CG33299 DOWNSTREAM Apoltp
X	7905797	X_7905797_SNP [dm3] X_8011764_SNP [dm6]	G	C	2.175e^-4	0.945	INTRON Tbh
2L	2424709	2L_2424709_SNP [dm3] 2L_2424709_SNP [dm6]	A	T	2.177e^-4	0.945	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
3L	7616648	3L_7616648_SNP [dm3] 3L_7623548_SNP [dm6]	C	A	2.178e^-4	0.945	INTRON CG33275	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9217371	2R_9217371_INS [dm3] 2R_13329866_INS [dm6]	A	ATA	2.179e^-4	0.945	UPSTREAM mir-184 EXON CR44206
2R	19535317	2R_19535317_SNP [dm3] 2R_23647794_SNP [dm6]	G	A	2.185e^-4	0.945	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	24476014	3R_24476014_SNP [dm3] 3R_28650292_SNP [dm6]	T	C	2.194e^-4	0.945	NON_SYNONYMOUS_CODING CG31050
3L	13929983	3L_13929983_SNP [dm3] 3L_13936883_SNP [dm6]	A	T	2.205e^-4	0.945	INTERGENIC
2L	14263888	2L_14263888_SNP [dm3] 2L_14263888_SNP [dm6]	G	A	2.205e^-4	0.945	SYNONYMOUS_CODING wb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	15822372	2R_15822372_SNP [dm3] 2R_19934867_SNP [dm6]	G	T	2.208e^-4	0.945	EXON CR44627
3L	18913594	3L_18913594_SNP [dm3] 3L_18920494_SNP [dm6]	C	A	2.215e^-4	0.945	UTR_3_PRIME CG3819 UPSTREAM CG18223 DOWNSTREAM CG3819
X	19975976	X_19975976_SNP [dm3] X_20081943_SNP [dm6]	G	A	2.216e^-4	0.945	INTERGENIC
3R	1319424	3R_1319424_SNP [dm3] 3R_5493702_SNP [dm6]	G	C	2.217e^-4	0.945	INTRON CG31547	TF binding site mE1_TFBS_cad
3L	2513759	3L_2513759_SNP [dm3] 3L_2513759_SNP [dm6]	T	C	2.226e^-4	0.945	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9073331	X_9073331_SNP [dm3] X_9179298_SNP [dm6]	T	G	2.230e^-4	0.945	UTR_3_PRIME mei-P26
2R	17788613	2R_17788613_SNP [dm3] 2R_21901108_SNP [dm6]	G	T	2.243e^-4	0.945	INTRON Fili	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11347214	2R_11347214_SNP [dm3] 2R_15459709_SNP [dm6]	C	G	2.252e^-4	0.945	INTRON CG43729
2R	16618967	2R_16618967_SNP [dm3] 2R_20731462_SNP [dm6]	T	G	2.262e^-4	0.945	UPSTREAM CG13442 INTRON dpr
2R	17414336	2R_17414336_DEL [dm3] 2R_21526831_DEL [dm6]	CGGCC	C	2.278e^-4	0.945	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	16523501	2L_16523501_SNP [dm3] 2L_16523501_SNP [dm6]	G	T	2.285e^-4	0.945	INTRON CG5953	TF binding site BDTNP1_TFBS_dl
3L	9814617	3L_9814617_SNP [dm3] 3L_9821517_SNP [dm6]	A	G	2.288e^-4	0.945	UPSTREAM CG43897 INTRON CG43897
2L	13389486	2L_13389486_SNP [dm3] 2L_13389486_SNP [dm6]	C	T	2.299e^-4	0.945	SYNONYMOUS_CODING CG7099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13935379	3L_13935379_SNP [dm3] 3L_13942279_SNP [dm6]	A	G	2.301e^-4	0.945	INTRON CG32137	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	1400389	3L_1400389_SNP [dm3] 3L_1400389_SNP [dm6]	A	G	2.303e^-4	0.945	SPLICE_SITE_REGION CG32320 INTRON Ptp61F & 1 other
3L	13929599	3L_13929599_SNP [dm3] 3L_13936499_SNP [dm6]	C	A	2.308e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_cad
3R	16239305	3R_16239305_SNP [dm3] 3R_20413583_SNP [dm6]	T	A	2.312e^-4	0.945	INTRON Gfrl
3R	3994543	3R_3994543_SNP [dm3] 3R_8168821_SNP [dm6]	C	T	2.312e^-4	0.945	INTRON grn
2R	4398795	2R_4398795_SNP [dm3] 2R_8511290_SNP [dm6]	C	T	2.320e^-4	0.945	INTRON mtt
3L	11353718	3L_11353718_SNP [dm3] 3L_11360618_SNP [dm6]	C	T	2.324e^-4	0.945	INTERGENIC
2R	20151028	2R_20151028_SNP [dm3] 2R_24263505_SNP [dm6]	A	G	2.327e^-4	0.945	INTRON CG3376	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	20271154	2R_20271154_SNP [dm3] 2R_24383631_SNP [dm6]	A	G	2.332e^-4	0.945	INTRON mAChR-A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12018443	3R_12018443_SNP [dm3] 3R_16192721_SNP [dm6]	T	C	2.341e^-4	0.945	INTRON sra
2L	10620490	2L_10620490_SNP [dm3] 2L_10620490_SNP [dm6]	C	G	2.346e^-4	0.945	SYNONYMOUS_CODING Trim9
3R	14523268	3R_14523268_SNP [dm3] 3R_18697546_SNP [dm6]	A	C	2.349e^-4	0.945	INTERGENIC
3R	13442120	3R_13442120_SNP [dm3] 3R_17616398_SNP [dm6]	A	C	2.351e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_zfh1
2L	2424776	2L_2424776_SNP [dm3] 2L_2424776_SNP [dm6]	A	G	2.354e^-4	0.945	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
2L	13341421	2L_13341421_SNP [dm3] 2L_13341421_SNP [dm6]	T	A	2.354e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	11974434	2L_11974434_SNP [dm3] 2L_11974434_SNP [dm6]	T	C	2.367e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14206581	3L_14206581_SNP [dm3] 3L_14213481_SNP [dm6]	T	C	2.368e^-4	0.945	INTRON nuf
2R	18157656	2R_18157656_SNP [dm3] 2R_22270151_SNP [dm6]	A	T	2.376e^-4	0.945	UPSTREAM dve INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7224374	2L_7224374_SNP [dm3] 2L_7224374_SNP [dm6]	A	T	2.377e^-4	0.945	UTR_3_PRIME Ndae1 INTRON Ndae1
2L	8327637	2L_8327637_SNP [dm3] 2L_8327637_SNP [dm6]	T	A	2.378e^-4	0.945	INTRON CG14275
X	19241094	X_19241094_INS [dm3] X_19347061_INS [dm6]	T	TA	2.386e^-4	0.945	INTRON nAChRalpha7
2L	3529530	2L_3529530_SNP [dm3] 2L_3529530_SNP [dm6]	T	A	2.389e^-4	0.945	SPLICE_SITE_REGION Spindly INTRON Spindly	TF binding site mE1_TFBS_sens
2L	2007818	2L_2007818_SNP [dm3] 2L_2007818_SNP [dm6]	A	G	2.401e^-4	0.945	UPSTREAM CG15353 & 1 other DOWNSTREAM CR45712 INTERGENIC
2R	15479810	2R_15479810_SNP [dm3] 2R_19592305_SNP [dm6]	T	G	2.403e^-4	0.945	INTRON sm
3L	5524355	3L_5524355_SNP [dm3] 3L_5531255_SNP [dm6]	C	T	2.403e^-4	0.945	INTERGENIC
3R	12724236	3R_12724236_SNP [dm3] 3R_16898514_SNP [dm6]	C	T	2.404e^-4	0.945	DOWNSTREAM CR43617 INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	2419737	2L_2419737_SNP [dm3] 2L_2419737_SNP [dm6]	A	G	2.411e^-4	0.945	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
X	7903822	X_7903822_SNP [dm3] X_8009789_SNP [dm6]	T	A	2.413e^-4	0.945	INTRON Tbh
2L	4499506	2L_4499506_SNP [dm3] 2L_4499506_SNP [dm6]	G	A	2.416e^-4	0.945	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	10023488	X_10023488_SNP [dm3] X_10129455_SNP [dm6]	C	A	2.419e^-4	0.945	INTRON CR44894 & 1 other
X	11312693	X_11312693_SNP [dm3] X_11418660_SNP [dm6]	T	A	2.419e^-4	0.945	INTERGENIC
2L	12053004	2L_12053004_SNP [dm3] 2L_12053004_SNP [dm6]	T	C	2.419e^-4	0.945	SYNONYMOUS_CODING JhI-21 DOWNSTREAM CG14945
3L	1588066	3L_1588066_SNP [dm3] 3L_1588066_SNP [dm6]	G	A	2.440e^-4	0.945	INTRON CG13917
2L	5707192	2L_5707192_SNP [dm3] 2L_5707192_SNP [dm6]	C	A	2.447e^-4	0.945	INTRON CG7236	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11744317	2L_11744317_DEL [dm3] 2L_11744317_DEL [dm6]	TATGT	C	2.447e^-4	0.945	UTR_3_PRIME Vha100-5 DOWNSTREAM Vha100-5 EXON CR44144
2L	11747315	2L_11747315_SNP [dm3] 2L_11747315_SNP [dm6]	A	G	2.455e^-4	0.945	INTERGENIC
2L	1287320	2L_1287320_SNP [dm3] 2L_1287320_SNP [dm6]	G	A	2.461e^-4	0.945	INTRON robo3
2R	18760831	2R_18760831_SNP [dm3] 2R_22873308_SNP [dm6]	T	C	2.470e^-4	0.945	SYNONYMOUS_CODING CG13532	TF binding site mE1_TFBS_chinmo
3L	4051300	3L_4051300_DEL [dm3] 3L_4051300_DEL [dm6]	CTCAGGCGC	C	2.480e^-4	0.945	INTRON CG1136	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	9870005	3L_9870005_SNP [dm3] 3L_9876905_SNP [dm6]	C	T	2.481e^-4	0.945	DOWNSTREAM CR45406 INTERGENIC
2L	8013414	2L_8013414_SNP [dm3] 2L_8013414_SNP [dm6]	T	C	2.487e^-4	0.945	INTRON Tg
2R	14275186	2R_14275186_SNP [dm3] 2R_18387681_SNP [dm6]	T	C	2.490e^-4	0.945	UPSTREAM IM3 DOWNSTREAM IM2 INTERGENIC
2L	14151210	2L_14151210_SNP [dm3] 2L_14151210_SNP [dm6]	G	A	2.490e^-4	0.945	INTRON CG17341
X	9585081	X_9585081_SNP [dm3] X_9691048_SNP [dm6]	T	A	2.491e^-4	0.945	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13562706	3R_13562706_SNP [dm3] 3R_17736984_SNP [dm6]	T	A	2.510e^-4	0.945	UTR_5_PRIME TyrRII
2R	17452575	2R_17452575_SNP [dm3] 2R_21565070_SNP [dm6]	C	T	2.514e^-4	0.945	INTRON CG10440
3L	1083549	3L_1083549_SNP [dm3] 3L_1083549_SNP [dm6]	T	C	2.516e^-4	0.945	INTRON bab1	TF binding site BDTNP1_TFBS_dl
2R	9526610	2R_9526610_MNP [dm3] 2R_13639105_MNP [dm6]	AAC	CCT	2.517e^-4	0.945	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9934888	2L_9934888_SNP [dm3] 2L_9934888_SNP [dm6]	T	C	2.525e^-4	0.945	UTR_3_PRIME CG31712
3L	4820755	3L_4820755_SNP [dm3] 3L_4820755_SNP [dm6]	G	C	2.528e^-4	0.945	SYNONYMOUS_CODING Dhc64C
X	2662919	X_2662919_DEL [dm3] X_2768886_DEL [dm6]	AAA	A	2.528e^-4	0.945	INTRON kirre
3R	24502598	3R_24502598_SNP [dm3] 3R_28676876_SNP [dm6]	A	C	2.532e^-4	0.945	INTRON CG9990
2L	2424711	2L_2424711_SNP [dm3] 2L_2424711_SNP [dm6]	A	T	2.532e^-4	0.945	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
2L	6514461	2L_6514461_DEL [dm3] 2L_6514461_DEL [dm6]	TCTATCATT	T	2.533e^-4	0.945	INTRON CG31637
X	7903376	X_7903376_SNP [dm3] X_8009343_SNP [dm6]	C	T	2.538e^-4	0.945	INTRON Tbh
X	2512088	X_2512088_SNP [dm3] X_2618055_SNP [dm6]	A	T	2.546e^-4	0.945	UTR_3_PRIME Tsp3A DOWNSTREAM Tsp3A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
3L	3838818	3L_3838818_SNP [dm3] 3L_3838818_SNP [dm6]	C	T	2.548e^-4	0.945	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16031873	3R_16031873_SNP [dm3] 3R_20206151_SNP [dm6]	G	A	2.551e^-4	0.945	INTRON Nlg4
3R	16239290	3R_16239290_SNP [dm3] 3R_20413568_SNP [dm6]	C	T	2.553e^-4	0.945	INTRON Gfrl
2L	2000406	2L_2000406_DEL [dm3] 2L_2000406_DEL [dm6]	TT	T	2.556e^-4	0.945	SPLICE_SITE_REGION CR43464 INTRON CG33543 & 1 other
3L	7131741	3L_7131741_SNP [dm3] 3L_7138641_SNP [dm6]	C	T	2.557e^-4	0.945	INTRON melt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15255337	X_15255337_SNP [dm3] X_15361304_SNP [dm6]	C	A	2.560e^-4	0.945	UPSTREAM Pp1-13C INTRON acj6
2L	2229083	2L_2229083_SNP [dm3] 2L_2229083_SNP [dm6]	A	T	2.563e^-4	0.945	INTRON rti
3L	6174109	3L_6174109_SNP [dm3] 3L_6181009_SNP [dm6]	A	G	2.570e^-4	0.945	SYNONYMOUS_CODING CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6174112	3L_6174112_SNP [dm3] 3L_6181012_SNP [dm6]	C	T	2.570e^-4	0.945	SYNONYMOUS_CODING CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7743525	2L_7743525_SNP [dm3] 2L_7743525_SNP [dm6]	T	C	2.570e^-4	0.945	DOWNSTREAM CG7214 INTERGENIC
2R	12286796	2R_12286796_SNP [dm3] 2R_16399291_SNP [dm6]	C	T	2.573e^-4	0.945	SYNONYMOUS_CODING Sema-2b	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9766385	3L_9766385_SNP [dm3] 3L_9773285_SNP [dm6]	G	C	2.578e^-4	0.945	UPSTREAM CG8177 INTRON CG8177
3L	6556672	3L_6556672_SNP [dm3] 3L_6563572_SNP [dm6]	A	G	2.579e^-4	0.945	SYNONYMOUS_CODING jv INTRON CG18769	TF binding site mE1_TFBS_cad
3L	6361969	3L_6361969_SNP [dm3] 3L_6368869_SNP [dm6]	G	A	2.579e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13535714	3L_13535714_SNP [dm3] 3L_13542614_SNP [dm6]	G	A	2.581e^-4	0.945	INTRON bru-3
X	7903792	X_7903792_SNP [dm3] X_8009759_SNP [dm6]	G	A	2.582e^-4	0.945	INTRON Tbh
2L	2424785	2L_2424785_SNP [dm3] 2L_2424785_SNP [dm6]	A	G	2.590e^-4	0.945	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
3L	13241894	3L_13241894_SNP [dm3] 3L_13248794_SNP [dm6]	A	G	2.601e^-4	0.945	UPSTREAM tRNA:D2:69F & 1 other INTRON caps
X	11111038	X_11111038_SNP [dm3] X_11217005_SNP [dm6]	A	G	2.606e^-4	0.945	INTERGENIC
2R	1385699	2R_1385699_SNP [dm3] 2R_5498194_SNP [dm6]	A	C	2.612e^-4	0.945	INTRON CG30438	transposable element FlyBase
3R	10955291	3R_10955291_SNP [dm3] 3R_15129569_SNP [dm6]	A	G	2.622e^-4	0.945	INTRON CG42788
3L	17028409	3L_17028409_SNP [dm3] 3L_17035309_SNP [dm6]	A	T	2.624e^-4	0.945	UPSTREAM beg INTERGENIC
3L	10146795	3L_10146795_SNP [dm3] 3L_10153695_SNP [dm6]	G	A	2.625e^-4	0.945	SYNONYMOUS_CODING dpr10 DOWNSTREAM CG8072 INTRON dpr10
3L	5376512	3L_5376512_SNP [dm3] 3L_5383412_SNP [dm6]	C	T	2.631e^-4	0.945	UPSTREAM Ir64a INTERGENIC
X	14510922	X_14510922_SNP [dm3] X_14616889_SNP [dm6]	C	T	2.637e^-4	0.945	INTRON NetA
3R	23849203	3R_23849203_SNP [dm3] 3R_28023481_SNP [dm6]	G	T	2.638e^-4	0.945	INTERGENIC
2R	18157671	2R_18157671_SNP [dm3] 2R_22270166_SNP [dm6]	T	A	2.642e^-4	0.945	UPSTREAM dve INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	12110326	X_12110326_DEL [dm3] X_12216293_DEL [dm6]	AAA	A	2.656e^-4	0.945	INTRON Ten-a
2L	8327634	2L_8327634_SNP [dm3] 2L_8327634_SNP [dm6]	A	G	2.674e^-4	0.945	INTRON CG14275
2L	11881645	2L_11881645_SNP [dm3] 2L_11881645_SNP [dm6]	T	A	2.678e^-4	0.945	INTRON Pde1c	TF binding site mE1_TFBS_inv
3L	8877016	3L_8877016_SNP [dm3] 3L_8883916_SNP [dm6]	A	G	2.680e^-4	0.945	INTRON dally
3L	3966356	3L_3966356_SNP [dm3] 3L_3966356_SNP [dm6]	T	C	2.681e^-4	0.945	INTERGENIC
2R	11815615	2R_11815615_SNP [dm3] 2R_15928110_SNP [dm6]	T	A	2.684e^-4	0.945	START_GAINED bdg UTR_5_PRIME bdg INTRON bdg
3L	14877249	3L_14877249_INS [dm3] 3L_14884149_INS [dm6]	A	AA	2.684e^-4	0.945	INTERGENIC
2L	13258558	2L_13258558_SNP [dm3] 2L_13258558_SNP [dm6]	G	T	2.688e^-4	0.945	UTR_3_PRIME CG31851 DOWNSTREAM CG31730 & 1 other
3L	5523671	3L_5523671_SNP [dm3] 3L_5530571_SNP [dm6]	C	T	2.692e^-4	0.945	INTERGENIC
2R	11833565	2R_11833565_SNP [dm3] 2R_15946060_SNP [dm6]	C	T	2.720e^-4	0.945	SYNONYMOUS_CODING Cyp4aa1 DOWNSTREAM mir-4919 & 1 other
2R	18576763	2R_18576763_INS [dm3] 2R_22689258_INS [dm6]	T	TT	2.722e^-4	0.945	UPSTREAM CR44763 & 1 other EXON CR44762	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4936064	2L_4936064_SNP [dm3] 2L_4936064_SNP [dm6]	T	A	2.723e^-4	0.945	INTRON hoe2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16757216	2L_16757216_SNP [dm3] 2L_16757216_SNP [dm6]	G	A	2.748e^-4	0.945	SYNONYMOUS_CODING yellow-b DOWNSTREAM ppk17
2L	12534212	2L_12534212_SNP [dm3] 2L_12534212_SNP [dm6]	A	G	2.757e^-4	0.945	INTRON bun
X	7932104	X_7932104_SNP [dm3] X_8038071_SNP [dm6]	T	C	2.757e^-4	0.945	UTR_3_PRIME fs_1_h UPSTREAM CG2233 DOWNSTREAM fs_1_h
3R	9552684	3R_9552684_SNP [dm3] 3R_13726962_SNP [dm6]	G	A	2.762e^-4	0.945	INTRON CG34383
2R	12363734	2R_12363734_SNP [dm3] 2R_16476229_SNP [dm6]	C	T	2.771e^-4	0.945	INTERGENIC
2R	10686192	2R_10686192_DEL [dm3] 2R_14798687_DEL [dm6]	TT	T	2.775e^-4	0.945	UTR_5_PRIME kn INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	5604088	2L_5604088_SNP [dm3] 2L_5604088_SNP [dm6]	C	A	2.775e^-4	0.945	INTRON CG14010
2R	17740189	2R_17740189_SNP [dm3] 2R_21852684_SNP [dm6]	T	C	2.784e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16523457	2L_16523457_SNP [dm3] 2L_16523457_SNP [dm6]	G	A	2.785e^-4	0.945	INTRON CG5953	TF binding site BDTNP1_TFBS_dl
X	21097972	X_21097972_SNP [dm3] X_21226945_SNP [dm6]	G	C	2.790e^-4	0.945	INTRON CG32521
2L	2229197	2L_2229197_SNP [dm3] 2L_2229197_SNP [dm6]	C	T	2.794e^-4	0.945	INTRON rti
2L	2229204	2L_2229204_SNP [dm3] 2L_2229204_SNP [dm6]	T	A	2.794e^-4	0.945	INTRON rti
X	9587474	X_9587474_SNP [dm3] X_9693441_SNP [dm6]	T	A	2.799e^-4	0.945	UPSTREAM btd INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9587478	X_9587478_DEL [dm3] X_9693445_DEL [dm6]	TA	T	2.799e^-4	0.945	UPSTREAM btd INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	22213159	X_22213159_SNP [dm3] X_22811323_SNP [dm6]	A	G	2.800e^-4	0.945	SYNONYMOUS_CODING CG12446	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	11423931	2R_11423931_SNP [dm3] 2R_15536426_SNP [dm6]	C	A	2.801e^-4	0.945	SPLICE_SITE_REGION CG30471 SYNONYMOUS_CODING CG30471
X	13430477	X_13430477_SNP [dm3] X_13536444_SNP [dm6]	A	C	2.807e^-4	0.945	DOWNSTREAM CG15756 INTERGENIC
2L	6554945	2L_6554945_SNP [dm3] 2L_6554945_SNP [dm6]	T	C	2.811e^-4	0.945	DOWNSTREAM Osm6 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	6748052	2R_6748052_SNP [dm3] 2R_10860547_SNP [dm6]	G	C	2.817e^-4	0.945	DOWNSTREAM CR44302 INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17252673	X_17252673_SNP [dm3] X_17358640_SNP [dm6]	C	A	2.820e^-4	0.945	INTERGENIC
3R	16019065	3R_16019065_DEL [dm3] 3R_20193343_DEL [dm6]	CA	G	2.826e^-4	0.945	INTERGENIC
3R	1319421	3R_1319421_DEL [dm3] 3R_5493699_DEL [dm6]	AG	A	2.833e^-4	0.945	INTRON CG31547	TF binding site mE1_TFBS_cad
3L	14206034	3L_14206034_SNP [dm3] 3L_14212934_SNP [dm6]	A	T	2.842e^-4	0.945	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	18070150	3L_18070150_SNP [dm3] 3L_18077050_SNP [dm6]	A	G	2.846e^-4	0.945	UPSTREAM CR45392 INTERGENIC
X	9179570	X_9179570_SNP [dm3] X_9285537_SNP [dm6]	C	A	2.852e^-4	0.945	INTRON lz
3R	12407309	3R_12407309_SNP [dm3] 3R_16581587_SNP [dm6]	G	C	2.854e^-4	0.945	INTRON Scp2
3L	6666562	3L_6666562_SNP [dm3] 3L_6673462_SNP [dm6]	A	G	2.858e^-4	0.945	INTERGENIC
2L	17567197	2L_17567197_SNP [dm3] 2L_17567197_SNP [dm6]	G	T	2.867e^-4	0.945	DOWNSTREAM mir-124 INTERGENIC
2L	12390171	2L_12390171_SNP [dm3] 2L_12390171_SNP [dm6]	T	G	2.871e^-4	0.945	INTRON bru-2
2L	922191	2L_922191_SNP [dm3] 2L_922191_SNP [dm6]	A	T	2.872e^-4	0.945	UPSTREAM CG4341 INTERGENIC
2L	14746010	2L_14746010_SNP [dm3] 2L_14746010_SNP [dm6]	G	T	2.883e^-4	0.945	UPSTREAM CG42587 & 1 other DOWNSTREAM CR45458 EXON CR45459
2L	13341297	2L_13341297_SNP [dm3] 2L_13341297_SNP [dm6]	G	T	2.884e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	13617667	X_13617667_SNP [dm3] X_13723634_SNP [dm6]	C	A	2.885e^-4	0.945	SYNONYMOUS_CODING mus101	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10042112	X_10042112_SNP [dm3] X_10148079_SNP [dm6]	T	G	2.900e^-4	0.945	INTRON CR44894 & 1 other
3R	16041453	3R_16041453_SNP [dm3] 3R_20215731_SNP [dm6]	G	A	2.901e^-4	0.945	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi
3R	18468194	3R_18468194_SNP [dm3] 3R_22642472_SNP [dm6]	C	A	2.908e^-4	0.945	INTRON CG45058
2R	15236689	2R_15236689_SNP [dm3] 2R_19349184_SNP [dm6]	T	G	2.912e^-4	0.945	INTRON Rgk1
2L	12542470	2L_12542470_SNP [dm3] 2L_12542470_SNP [dm6]	T	G	2.914e^-4	0.945	UPSTREAM CR42746 INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	18760834	2R_18760834_SNP [dm3] 2R_22873311_SNP [dm6]	G	C	2.916e^-4	0.945	SYNONYMOUS_CODING CG13532	TF binding site mE1_TFBS_chinmo
2R	12177468	2R_12177468_SNP [dm3] 2R_16289963_SNP [dm6]	T	A	2.916e^-4	0.945	SYNONYMOUS_CODING JhI-26 UPSTREAM CG30099 EXON CR43730
2L	14734601	2L_14734601_DEL [dm3] 2L_14734601_DEL [dm6]	GA	G	2.917e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_inv
3L	13980020	3L_13980020_SNP [dm3] 3L_13986920_SNP [dm6]	C	T	2.923e^-4	0.945	NON_SYNONYMOUS_CODING CG17362 UPSTREAM CG9040 INTRON CG17364
2L	3233789	2L_3233789_SNP [dm3] 2L_3233789_SNP [dm6]	C	T	2.924e^-4	0.945	INTERGENIC
3R	21855653	3R_21855653_SNP [dm3] 3R_26029931_SNP [dm6]	T	C	2.928e^-4	0.945	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3837804	3L_3837804_SNP [dm3] 3L_3837804_SNP [dm6]	A	C	2.943e^-4	0.945	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13820140	2R_13820140_DEL [dm3] 2R_17932635_DEL [dm6]	TCA	T	2.944e^-4	0.945	INTERGENIC
3L	15078081	3L_15078081_SNP [dm3] 3L_15084981_SNP [dm6]	G	T	2.944e^-4	0.945	INTRON cp309
2L	1274641	2L_1274641_SNP [dm3] 2L_1274641_SNP [dm6]	T	A	2.955e^-4	0.945	INTRON robo3
3R	14804089	3R_14804089_SNP [dm3] 3R_18978367_SNP [dm6]	A	T	2.962e^-4	0.945	UTR_3_PRIME CG12269 DOWNSTREAM Smu1 & 1 other
2L	14723220	2L_14723220_SNP [dm3] 2L_14723220_SNP [dm6]	T	A	2.979e^-4	0.945	INTERGENIC
3L	10113166	3L_10113166_SNP [dm3] 3L_10120066_SNP [dm6]	T	C	2.991e^-4	0.945	INTRON dpr6
2L	3894065	2L_3894065_SNP [dm3] 2L_3894065_SNP [dm6]	C	T	2.994e^-4	0.945	INTRON capu
X	18979396	X_18979396_SNP [dm3] X_19085363_SNP [dm6]	A	G	2.994e^-4	0.945	INTERGENIC
X	2662907	X_2662907_SNP [dm3] X_2768874_SNP [dm6]	C	T	3.001e^-4	0.945	INTRON kirre
3R	25922807	3R_25922807_SNP [dm3] 3R_30097085_SNP [dm6]	G	C	3.002e^-4	0.945	INTRON sima	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	8383905	3R_8383905_SNP [dm3] 3R_12558183_SNP [dm6]	T	C	3.002e^-4	0.945	INTRON Octbeta2R
X	9587466	X_9587466_SNP [dm3] X_9693433_SNP [dm6]	G	T	3.009e^-4	0.945	UPSTREAM btd INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8853169	3L_8853169_SNP [dm3] 3L_8860069_SNP [dm6]	C	T	3.026e^-4	0.945	INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	18761260	2R_18761260_SNP [dm3] 2R_22873737_SNP [dm6]	T	A	3.029e^-4	0.945	DOWNSTREAM CR45469 INTRON CG13532
2R	18761285	2R_18761285_SNP [dm3] 2R_22873762_SNP [dm6]	T	G	3.029e^-4	0.945	DOWNSTREAM CR45469 INTRON CG13532
X	10812553	X_10812553_SNP [dm3] X_10918520_SNP [dm6]	G	A	3.036e^-4	0.945	SPLICE_SITE_REGION CG43901 INTRON CG43901	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	9410676	2L_9410676_SNP [dm3] 2L_9410676_SNP [dm6]	A	T	3.038e^-4	0.945	INTRON Shawl
2L	17066102	2L_17066102_SNP [dm3] 2L_17066102_SNP [dm6]	G	A	3.038e^-4	0.945	INTERGENIC
2L	14717249	2L_14717249_SNP [dm3] 2L_14717249_SNP [dm6]	G	A	3.041e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18801285	2R_18801285_SNP [dm3] 2R_22913762_SNP [dm6]	A	T	3.042e^-4	0.945	SYNONYMOUS_CODING nahoda	TF binding site mE1_TFBS_sens
2L	1239419	2L_1239419_SNP [dm3] 2L_1239419_SNP [dm6]	A	C	3.043e^-4	0.945	UPSTREAM CG5397 INTERGENIC
3L	12343828	3L_12343828_SNP [dm3] 3L_12350728_SNP [dm6]	G	A	3.047e^-4	0.945	INTRON CrzR
3R	9552678	3R_9552678_SNP [dm3] 3R_13726956_SNP [dm6]	T	A	3.051e^-4	0.945	INTRON CG34383
3L	20876360	3L_20876360_SNP [dm3] 3L_20883260_SNP [dm6]	A	T	3.062e^-4	0.945	INTRON CG32432
3R	9739796	3R_9739796_SNP [dm3] 3R_13914074_SNP [dm6]	G	A	3.074e^-4	0.945	INTERGENIC
2L	11400375	2L_11400375_SNP [dm3] 2L_11400375_SNP [dm6]	A	C	3.081e^-4	0.945	INTERGENIC	regulatory region REDfly_CRMs
3R	15358536	3R_15358536_SNP [dm3] 3R_19532814_SNP [dm6]	G	A	3.085e^-4	0.945	INTRON Dys
2L	2424778	2L_2424778_SNP [dm3] 2L_2424778_SNP [dm6]	A	G	3.085e^-4	0.945	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
3R	9742108	3R_9742108_SNP [dm3] 3R_13916386_SNP [dm6]	C	T	3.088e^-4	0.945	INTERGENIC
3L	1854253	3L_1854253_SNP [dm3] 3L_1854253_SNP [dm6]	T	G	3.089e^-4	0.945	INTRON CG13936	insulator Insulator_Class_II.mE01
3L	4496607	3L_4496607_INS [dm3] 3L_4496607_INS [dm6]	G	GGGTA	3.104e^-4	0.945	DOWNSTREAM CG13721 INTERGENIC
2R	18801201	2R_18801201_SNP [dm3] 2R_22913678_SNP [dm6]	T	G	3.106e^-4	0.945	SYNONYMOUS_CODING nahoda	TF binding site mE1_TFBS_sens
3L	4496592	3L_4496592_DEL [dm3] 3L_4496592_DEL [dm6]	ACAAATTACGCA...	A	3.117e^-4	0.945	DOWNSTREAM CG13721 INTERGENIC
2L	17080252	2L_17080252_SNP [dm3] 2L_17080252_SNP [dm6]	A	G	3.121e^-4	0.945	INTERGENIC
3L	5524605	3L_5524605_SNP [dm3] 3L_5531505_SNP [dm6]	G	T	3.128e^-4	0.945	INTERGENIC
3R	13442868	3R_13442868_SNP [dm3] 3R_17617146_SNP [dm6]	G	T	3.141e^-4	0.945	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	13481273	3R_13481273_SNP [dm3] 3R_17655551_SNP [dm6]	A	G	3.142e^-4	0.945	INTRON CG14322	TF binding site BDTNP1_TFBS_dl
2R	12455977	2R_12455977_SNP [dm3] 2R_16568472_SNP [dm6]	T	C	3.146e^-4	0.945	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
3R	16041564	3R_16041564_SNP [dm3] 3R_20215842_SNP [dm6]	G	A	3.148e^-4	0.945	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi
3L	5223962	3L_5223962_SNP [dm3] 3L_5230862_SNP [dm6]	G	C	3.163e^-4	0.945	INTRON shep
2L	2419744	2L_2419744_SNP [dm3] 2L_2419744_SNP [dm6]	T	G	3.165e^-4	0.945	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
3R	9711019	3R_9711019_SNP [dm3] 3R_13885297_SNP [dm6]	C	G	3.175e^-4	0.945	INTERGENIC
X	10018304	X_10018304_SNP [dm3] X_10124271_SNP [dm6]	G	T	3.177e^-4	0.945	UPSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
2L	11833897	2L_11833897_SNP [dm3] 2L_11833897_SNP [dm6]	A	C	3.179e^-4	0.945	UPSTREAM CG45011 & 1 other INTRON Pde1c
2L	14733257	2L_14733257_SNP [dm3] 2L_14733257_SNP [dm6]	A	C	3.184e^-4	0.945	UPSTREAM CR44857 INTERGENIC
3R	9551474	3R_9551474_MNP [dm3] 3R_13725752_MNP [dm6]	CAA	TTG	3.190e^-4	0.945	INTRON CG34383
2L	13251412	2L_13251412_SNP [dm3] 2L_13251412_SNP [dm6]	T	C	3.191e^-4	0.945	UPSTREAM CG31728 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26808830	3R_26808830_SNP [dm3] 3R_30983108_SNP [dm6]	C	A	3.194e^-4	0.945	INTRON 5-HT7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	7047609	3R_7047609_SNP [dm3] 3R_11221887_SNP [dm6]	G	A	3.207e^-4	0.945	UPSTREAM RpL3 & 3 others DOWNSTREAM CR31144 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA
3L	2825393	3L_2825393_SNP [dm3] 3L_2825393_SNP [dm6]	C	T	3.207e^-4	0.945	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	21903452	2L_21903452_SNP [dm3] 2L_21903452_SNP [dm6]	C	G	3.208e^-4	0.945	SYNONYMOUS_CODING CG1421
X	14076400	X_14076400_SNP [dm3] X_14182367_SNP [dm6]	A	T	3.213e^-4	0.945	SYNONYMOUS_CODING CG11584	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9983870	2L_9983870_SNP [dm3] 2L_9983870_SNP [dm6]	C	T	3.214e^-4	0.945	UPSTREAM bib EXON CR13130	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	3894069	2L_3894069_SNP [dm3] 2L_3894069_SNP [dm6]	T	C	3.219e^-4	0.945	INTRON capu
3L	1260221	3L_1260221_SNP [dm3] 3L_1260221_SNP [dm6]	T	A	3.220e^-4	0.945	INTRON CG9134
3R	14925945	3R_14925945_SNP [dm3] 3R_19100223_SNP [dm6]	A	T	3.220e^-4	0.945	INTRON CG6040
2R	14340621	2R_14340621_SNP [dm3] 2R_18453116_SNP [dm6]	C	T	3.223e^-4	0.945	SYNONYMOUS_CODING CG17669 DOWNSTREAM CG5190	TF binding site mE1_TFBS_cad
3L	11514340	3L_11514340_SNP [dm3] 3L_11521240_SNP [dm6]	A	C	3.224e^-4	0.945	UTR_3_PRIME CG11714 UPSTREAM Fuca
X	6252878	X_6252878_SNP [dm3] X_6358845_SNP [dm6]	G	C	3.226e^-4	0.945	INTRON kdn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	446692	3L_446692_SNP [dm3] 3L_446692_SNP [dm6]	A	G	3.226e^-4	0.945	INTRON klar	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9855183	2L_9855183_SNP [dm3] 2L_9855183_SNP [dm6]	A	T	3.234e^-4	0.945	INTRON nAChRalpha6
2L	9377376	2L_9377376_SNP [dm3] 2L_9377376_SNP [dm6]	T	C	3.255e^-4	0.945	INTRON Shawl
3L	2791800	3L_2791800_SNP [dm3] 3L_2791800_SNP [dm6]	G	A	3.268e^-4	0.945	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14275155	2R_14275155_SNP [dm3] 2R_18387650_SNP [dm6]	A	G	3.275e^-4	0.945	UPSTREAM IM3 DOWNSTREAM IM2 INTERGENIC
2L	13427294	2L_13427294_SNP [dm3] 2L_13427294_SNP [dm6]	C	T	3.278e^-4	0.945	INTRON CG42784
2R	8197849	2R_8197849_SNP [dm3] 2R_12310344_SNP [dm6]	C	T	3.278e^-4	0.945	UTR_3_PRIME CG17739 UPSTREAM CG30203
2L	16268452	2L_16268452_SNP [dm3] 2L_16268452_SNP [dm6]	C	T	3.279e^-4	0.945	INTRON crp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14449333	3R_14449333_SNP [dm3] 3R_18623611_SNP [dm6]	C	A	3.281e^-4	0.945	INTRON qin
2L	1933308	2L_1933308_SNP [dm3] 2L_1933308_SNP [dm6]	G	T	3.284e^-4	0.945	INTRON CG7337
2R	12633534	2R_12633534_SNP [dm3] 2R_16746029_SNP [dm6]	T	C	3.284e^-4	0.945	SYNONYMOUS_CODING CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4034146	3L_4034146_DEL [dm3] 3L_4034146_DEL [dm6]	TA	T	3.285e^-4	0.945	DOWNSTREAM Gr64d INTRON Gr64d & 1 other EXON CR45042
2L	1309438	2L_1309438_SNP [dm3] 2L_1309438_SNP [dm6]	G	C	3.294e^-4	0.945	INTERGENIC
2R	6977143	2R_6977143_SNP [dm3] 2R_11089638_SNP [dm6]	G	A	3.294e^-4	0.945	INTRON luna	TF binding site BDTNP1_TFBS_twi
3R	27640934	3R_27640934_SNP [dm3] 3R_31815212_SNP [dm6]	G	T	3.297e^-4	0.945	INTRON RhoGAP100F
3R	5197775	3R_5197775_INS [dm3] 3R_9372053_INS [dm6]	C	CTTTTCCTCTTCC...	3.299e^-4	0.945	CODON_INSERTION FER UPSTREAM FER INTRON FER
3L	7143725	3L_7143725_SNP [dm3] 3L_7150625_SNP [dm6]	G	A	3.301e^-4	0.945	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6276391	2L_6276391_SNP [dm3] 2L_6276391_SNP [dm6]	T	C	3.301e^-4	0.945	INTRON Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17427085	2L_17427085_SNP [dm3] 2L_17427085_SNP [dm6]	C	T	3.311e^-4	0.946	INTRON Dif
2L	14735063	2L_14735063_SNP [dm3] 2L_14735063_SNP [dm6]	A	G	3.323e^-4	0.946	UPSTREAM CG31835 INTERGENIC
3L	10005870	3L_10005870_SNP [dm3] 3L_10012770_SNP [dm6]	T	A	3.352e^-4	0.946	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9068080	3L_9068080_SNP [dm3] 3L_9074980_SNP [dm6]	A	G	3.363e^-4	0.946	DOWNSTREAM CG4942 INTRON Tequila	TF binding site mE1_TFBS_cad
X	21297470	X_21297470_SNP [dm3] X_21426443_SNP [dm6]	G	T	3.365e^-4	0.946	INTRON CG42343
X	13203950	X_13203950_SNP [dm3] X_13309917_SNP [dm6]	T	A	3.366e^-4	0.946	INTRON IP3K2
3L	21193852	3L_21193852_DEL [dm3] 3L_21200752_DEL [dm6]	CGACGTGCCGGGCGAAAGC...	C	3.368e^-4	0.946	UPSTREAM CG33056 INTRON CG33054 & 1 other
X	3262772	X_3262772_SNP [dm3] X_3368739_SNP [dm6]	G	A	3.401e^-4	0.946	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	12964275	3R_12964275_SNP [dm3] 3R_17138553_SNP [dm6]	C	T	3.403e^-4	0.946	SYNONYMOUS_CODING CG5255 UPSTREAM CG5265
3L	4034174	3L_4034174_SNP [dm3] 3L_4034174_SNP [dm6]	C	T	3.407e^-4	0.946	SYNONYMOUS_CODING Gr64e UTR_3_PRIME Gr64d DOWNSTREAM Gr64d EXON CR45042
3R	9932392	3R_9932392_SNP [dm3] 3R_14106670_SNP [dm6]	C	T	3.413e^-4	0.946	NON_SYNONYMOUS_CODING CG12402	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9691708	2R_9691708_SNP [dm3] 2R_13804203_SNP [dm6]	A	C	3.417e^-4	0.946	INTRON Cpr50Cb	TF binding site mE1_TFBS_cad
2L	16800569	2L_16800569_SNP [dm3] 2L_16800569_SNP [dm6]	T	A	3.423e^-4	0.946	INTRON Ugt36Bc
2L	16800582	2L_16800582_SNP [dm3] 2L_16800582_SNP [dm6]	C	T	3.423e^-4	0.946	INTRON Ugt36Bc	TF binding site mE1_TFBS_cad
3L	14877052	3L_14877052_SNP [dm3] 3L_14883952_SNP [dm6]	C	G	3.436e^-4	0.946	INTERGENIC
2R	12283448	2R_12283448_SNP [dm3] 2R_16395943_SNP [dm6]	A	T	3.440e^-4	0.946	INTRON Sema-2b	TF binding site mE1_TFBS_inv
2R	16570854	2R_16570854_SNP [dm3] 2R_20683349_SNP [dm6]	A	T	3.453e^-4	0.946	INTERGENIC
3R	16239276	3R_16239276_SNP [dm3] 3R_20413554_SNP [dm6]	T	A	3.458e^-4	0.946	INTRON Gfrl
2R	9324156	2R_9324156_SNP [dm3] 2R_13436651_SNP [dm6]	T	C	3.458e^-4	0.946	SYNONYMOUS_CODING CG42321 INTRON CG42321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	22053349	X_22053349_SNP [dm3] X_22651513_SNP [dm6]	G	A	3.458e^-4	0.946	INTERGENIC	transposable element FlyBase
4	321693	4_321693_SNP [dm3] 4_301067_SNP [dm6]	C	T	3.464e^-4	0.946	INTRON Syt7
3L	7177066	3L_7177066_SNP [dm3] 3L_7183966_SNP [dm6]	T	A	3.466e^-4	0.946	INTRON Dscam2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20270355	2R_20270355_SNP [dm3] 2R_24382832_SNP [dm6]	T	C	3.469e^-4	0.946	INTRON mAChR-A
2R	20270560	2R_20270560_SNP [dm3] 2R_24383037_SNP [dm6]	C	T	3.469e^-4	0.946	INTRON mAChR-A	TF binding site mE1_TFBS_chinmo
3R	16018836	3R_16018836_SNP [dm3] 3R_20193114_SNP [dm6]	G	A	3.473e^-4	0.946	INTERGENIC
3L	4509562	3L_4509562_SNP [dm3] 3L_4509562_SNP [dm6]	T	G	3.478e^-4	0.946	INTERGENIC
3L	4251220	3L_4251220_SNP [dm3] 3L_4251220_SNP [dm6]	A	T	3.489e^-4	0.946	SYNONYMOUS_CODING ago	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	13966877	3R_13966877_SNP [dm3] 3R_18141155_SNP [dm6]	A	G	3.494e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13966889	3R_13966889_SNP [dm3] 3R_18141167_SNP [dm6]	T	A	3.494e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18113780	3L_18113780_SNP [dm3] 3L_18120680_SNP [dm6]	T	C	3.499e^-4	0.946	SYNONYMOUS_CODING CG7341 DOWNSTREAM CG42853	TF binding site mE1_TFBS_cad
X	8016816	X_8016816_SNP [dm3] X_8122783_SNP [dm6]	T	G	3.528e^-4	0.946	INTRON cyr
3L	4509559	3L_4509559_SNP [dm3] 3L_4509559_SNP [dm6]	G	A	3.538e^-4	0.946	INTERGENIC
3L	10013105	3L_10013105_SNP [dm3] 3L_10020005_SNP [dm6]	C	G	3.550e^-4	0.946	INTRON dpr6
2L	6276396	2L_6276396_MNP [dm3] 2L_6276396_MNP [dm6]	GAT	AGG	3.550e^-4	0.946	INTRON Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14624482	3R_14624482_SNP [dm3] 3R_18798760_SNP [dm6]	T	A	3.557e^-4	0.946	DOWNSTREAM CG18208 INTERGENIC
2L	11974449	2L_11974449_SNP [dm3] 2L_11974449_SNP [dm6]	A	G	3.561e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20514391	X_20514391_SNP [dm3] X_20643364_SNP [dm6]	T	C	3.564e^-4	0.946	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
3R	13443584	3R_13443584_INS [dm3] 3R_17617862_INS [dm6]	A	AT	3.571e^-4	0.946	DOWNSTREAM tRNA:P:90Ca & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_zfh1
2L	6568336	2L_6568336_SNP [dm3] 2L_6568336_SNP [dm6]	T	A	3.582e^-4	0.946	DOWNSTREAM CG11319 INTERGENIC
2L	2000416	2L_2000416_SNP [dm3] 2L_2000416_SNP [dm6]	C	T	3.584e^-4	0.946	SPLICE_SITE_REGION CR43464 INTRON CG33543 EXON CR43464
2R	1327745	2R_1327745_SNP [dm3] 2R_5440240_SNP [dm6]	T	C	3.587e^-4	0.946	INTRON laccase2
2R	18138977	2R_18138977_SNP [dm3] 2R_22251472_SNP [dm6]	A	C	3.590e^-4	0.946	INTRON dve	TF binding site mE1_TFBS_HSA
2R	18138980	2R_18138980_SNP [dm3] 2R_22251475_SNP [dm6]	T	C	3.590e^-4	0.946	INTRON dve
3R	18154940	3R_18154940_SNP [dm3] 3R_22329218_SNP [dm6]	T	C	3.607e^-4	0.946	UPSTREAM CG7080 INTERGENIC	TF binding site mE1_TFBS_cad
3L	15767684	3L_15767684_SNP [dm3] 3L_15774584_SNP [dm6]	T	C	3.609e^-4	0.946	INTERGENIC
3R	1700394	3R_1700394_SNP [dm3] 3R_5874672_SNP [dm6]	C	T	3.611e^-4	0.946	INTRON CG34113
2R	1327689	2R_1327689_SNP [dm3] 2R_5440184_SNP [dm6]	T	A	3.619e^-4	0.946	INTRON laccase2
3L	9139678	3L_9139678_SNP [dm3] 3L_9146578_SNP [dm6]	G	A	3.623e^-4	0.946	UTR_3_PRIME Rdl DOWNSTREAM nwk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6174106	3L_6174106_SNP [dm3] 3L_6181006_SNP [dm6]	T	C	3.623e^-4	0.946	SYNONYMOUS_CODING CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17876730	2R_17876730_SNP [dm3] 2R_21989225_SNP [dm6]	G	A	3.629e^-4	0.946	SYNONYMOUS_CODING CG34370	TF binding site mE1_TFBS_cad
2R	8934653	2R_8934653_SNP [dm3] 2R_13047148_SNP [dm6]	G	A	3.629e^-4	0.946	SYNONYMOUS_CODING CG13323
3R	6930647	3R_6930647_SNP [dm3] 3R_11104925_SNP [dm6]	C	G	3.648e^-4	0.946	INTERGENIC
3L	4496606	3L_4496606_SNP [dm3] 3L_4496606_SNP [dm6]	C	G	3.664e^-4	0.946	DOWNSTREAM CG13721 INTERGENIC
2L	11495990	2L_11495990_SNP [dm3] 2L_11495990_SNP [dm6]	A	T	3.675e^-4	0.946	DOWNSTREAM CG6488 INTERGENIC
2L	14768133	2L_14768133_SNP [dm3] 2L_14768133_SNP [dm6]	C	T	3.676e^-4	0.946	DOWNSTREAM CG4701 INTERGENIC
3L	7846138	3L_7846138_SNP [dm3] 3L_7853038_SNP [dm6]	C	T	3.682e^-4	0.946	INTRON Pdp1
2L	17705828	2L_17705828_SNP [dm3] 2L_17705828_SNP [dm6]	T	G	3.683e^-4	0.946	UTR_3_PRIME CG43231 INTRON CadN
2L	15462211	2L_15462211_SNP [dm3] 2L_15462211_SNP [dm6]	C	G	3.689e^-4	0.946	INTERGENIC
2L	8620018	2L_8620018_SNP [dm3] 2L_8620018_SNP [dm6]	G	A	3.699e^-4	0.946	UPSTREAM tRNA:CR31602 INTRON Sema-1a
X	7903357	X_7903357_SNP [dm3] X_8009324_SNP [dm6]	C	A	3.712e^-4	0.946	INTRON Tbh
2L	12166337	2L_12166337_SNP [dm3] 2L_12166337_SNP [dm6]	T	C	3.718e^-4	0.946	SYNONYMOUS_CODING ZnT33D UTR_3_PRIME ZnT33D INTRON CG31760
2L	17044340	2L_17044340_SNP [dm3] 2L_17044340_SNP [dm6]	T	C	3.719e^-4	0.946	INTERGENIC
3R	16239453	3R_16239453_SNP [dm3] 3R_20413731_SNP [dm6]	T	G	3.726e^-4	0.946	INTRON Gfrl
2R	18138978	2R_18138978_SNP [dm3] 2R_22251473_SNP [dm6]	G	T	3.735e^-4	0.946	INTRON dve
3R	6917571	3R_6917571_SNP [dm3] 3R_11091849_SNP [dm6]	T	C	3.738e^-4	0.946	INTERGENIC
3L	298077	3L_298077_SNP [dm3] 3L_298077_SNP [dm6]	A	T	3.743e^-4	0.946	SYNONYMOUS_CODING RhoGEF3 INTRON RhoGEF3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	5493612	2L_5493612_SNP [dm3] 2L_5493612_SNP [dm6]	C	T	3.747e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	7769480	X_7769480_SNP [dm3] X_7875447_SNP [dm6]	C	T	3.747e^-4	0.946	SYNONYMOUS_CODING Ir7c
3L	5487171	3L_5487171_SNP [dm3] 3L_5494071_SNP [dm6]	T	A	3.759e^-4	0.946	EXON CR44520
3L	19839121	3L_19839121_SNP [dm3] 3L_19846021_SNP [dm6]	A	T	3.760e^-4	0.946	INTRON Papss	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16417216	3L_16417216_SNP [dm3] 3L_16424116_SNP [dm6]	A	T	3.774e^-4	0.946	INTRON CG33158 & 1 other
3L	16417217	3L_16417217_SNP [dm3] 3L_16424117_SNP [dm6]	A	T	3.774e^-4	0.946	INTRON CG33158 & 1 other
3L	11933255	3L_11933255_SNP [dm3] 3L_11940155_SNP [dm6]	T	A	3.777e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9753845	3R_9753845_SNP [dm3] 3R_13928123_SNP [dm6]	G	A	3.795e^-4	0.946	INTERGENIC
3L	15784672	3L_15784672_SNP [dm3] 3L_15791572_SNP [dm6]	T	A	3.796e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9979161	2R_9979161_SNP [dm3] 2R_14091656_SNP [dm6]	C	T	3.806e^-4	0.946	SYNONYMOUS_CODING CG42288 DOWNSTREAM CG42287 INTRON Prosap
3R	22410745	3R_22410745_SNP [dm3] 3R_26585023_SNP [dm6]	A	G	3.807e^-4	0.946	NON_SYNONYMOUS_CODING scrib INTRON scrib	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9726547	3R_9726547_SNP [dm3] 3R_13900825_SNP [dm6]	A	T	3.809e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18905016	3L_18905016_SNP [dm3] 3L_18911916_SNP [dm6]	C	T	3.811e^-4	0.946	UPSTREAM Ir75d INTRON CG14077
X	2371333	X_2371333_INS [dm3] X_2477300_INS [dm6]	A	AAAGGA	3.817e^-4	0.946	UTR_3_PRIME trol INTRON trol	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21099104	X_21099104_SNP [dm3] X_21228077_SNP [dm6]	A	C	3.825e^-4	0.946	INTRON CG32521
X	13368305	X_13368305_SNP [dm3] X_13474272_SNP [dm6]	G	A	3.826e^-4	0.946	INTRON Neto
3L	12187728	3L_12187728_SNP [dm3] 3L_12194628_SNP [dm6]	A	C	3.834e^-4	0.946	UPSTREAM thoc6 INTERGENIC
3R	23451429	3R_23451429_SNP [dm3] 3R_27625707_SNP [dm6]	A	G	3.850e^-4	0.946	SYNONYMOUS_CODING CG5612 INTRON Tusp
3R	12203342	3R_12203342_SNP [dm3] 3R_16377620_SNP [dm6]	T	C	3.850e^-4	0.946	SYNONYMOUS_CODING ss	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4821080	3L_4821080_SNP [dm3] 3L_4821080_SNP [dm6]	A	T	3.852e^-4	0.946	INTRON Dhc64C
3L	4821094	3L_4821094_SNP [dm3] 3L_4821094_SNP [dm6]	A	T	3.852e^-4	0.946	INTRON Dhc64C
3L	18834923	3L_18834923_SNP [dm3] 3L_18841823_SNP [dm6]	C	T	3.863e^-4	0.946	UPSTREAM Indy INTRON Indy EXON CR32027	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17043916	2L_17043916_SNP [dm3] 2L_17043916_SNP [dm6]	C	G	3.865e^-4	0.946	UPSTREAM CR43802 INTERGENIC
2R	19491339	2R_19491339_SNP [dm3] 2R_23603816_SNP [dm6]	C	T	3.869e^-4	0.946	UTR_3_PRIME CG17664 DOWNSTREAM CG5398
2L	5825126	2L_5825126_DEL [dm3] 2L_5825126_DEL [dm6]	CATTTGTAAGCTTTCTTAAG...	C	3.873e^-4	0.946	UTR_5_PRIME TrissinR
2R	11833777	2R_11833777_SNP [dm3] 2R_15946272_SNP [dm6]	C	T	3.893e^-4	0.946	SYNONYMOUS_CODING Cyp4aa1 DOWNSTREAM mir-4919 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18593779	2R_18593779_SNP [dm3] 2R_22706274_SNP [dm6]	G	A	3.898e^-4	0.946	NON_SYNONYMOUS_CODING Obp58c UPSTREAM Obp58d DOWNSTREAM Obp58b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4820752	3L_4820752_SNP [dm3] 3L_4820752_SNP [dm6]	A	G	3.901e^-4	0.946	SYNONYMOUS_CODING Dhc64C
3L	16452276	3L_16452276_DEL [dm3] 3L_16459176_DEL [dm6]	GGAG	G	3.908e^-4	0.946	INTRON CG33158
2R	17420935	2R_17420935_INS [dm3] 2R_21533430_INS [dm6]	A	AGTGCGA	3.921e^-4	0.946	INTRON Egfr
2R	16190792	2R_16190792_SNP [dm3] 2R_20303287_SNP [dm6]	A	G	3.933e^-4	0.946	DOWNSTREAM CR44640 EXON CR44641
3R	14489999	3R_14489999_SNP [dm3] 3R_18664277_SNP [dm6]	T	C	3.936e^-4	0.946	UPSTREAM Cpsf73 INTRON Gos28	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	15451881	X_15451881_SNP [dm3] X_15557848_SNP [dm6]	A	G	3.940e^-4	0.946	INTERGENIC
3L	13835327	3L_13835327_SNP [dm3] 3L_13842227_SNP [dm6]	G	A	3.945e^-4	0.946	START_GAINED CG8757 UTR_5_PRIME CG8757 DOWNSTREAM CG8750	TF binding site mE1_TFBS_cad
X	17248087	X_17248087_SNP [dm3] X_17354054_SNP [dm6]	T	C	3.945e^-4	0.946	INTERGENIC
3L	2637274	3L_2637274_SNP [dm3] 3L_2637274_SNP [dm6]	G	A	3.948e^-4	0.946	NON_SYNONYMOUS_CODING MEP-1 UTR_3_PRIME CG42245	TF binding site mE1_TFBS_cad
2L	14726241	2L_14726241_SNP [dm3] 2L_14726241_SNP [dm6]	A	G	3.958e^-4	0.946	SYNONYMOUS_CODING CG42685
3R	24431363	3R_24431363_SNP [dm3] 3R_28605641_SNP [dm6]	G	A	3.960e^-4	0.946	UTR_3_PRIME Hrb98DE UPSTREAM CG9986 DOWNSTREAM Hrb98DE	TF binding site BDTNP1_TFBS_dl
2R	18533278	2R_18533278_SNP [dm3] 2R_22645773_SNP [dm6]	G	T	3.961e^-4	0.946	DOWNSTREAM CG30195 INTRON CG2852	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3861641	2L_3861641_SNP [dm3] 2L_3861641_SNP [dm6]	T	G	3.964e^-4	0.946	INTRON CR44078	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	3430762	2R_3430762_SNP [dm3] 2R_7543257_SNP [dm6]	A	G	3.967e^-4	0.946	INTRON Corin
3L	10013140	3L_10013140_SNP [dm3] 3L_10020040_SNP [dm6]	T	A	3.977e^-4	0.946	INTRON dpr6
2L	13624709	2L_13624709_SNP [dm3] 2L_13624709_SNP [dm6]	A	T	3.978e^-4	0.946	INTRON kuz
2R	16922427	2R_16922427_SNP [dm3] 2R_21034922_SNP [dm6]	C	T	3.981e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	23163549	3R_23163549_INS [dm3] 3R_27337827_INS [dm6]	A	ATA	4.003e^-4	0.946	INTERGENIC
2R	16167685	2R_16167685_SNP [dm3] 2R_20280180_SNP [dm6]	A	C	4.004e^-4	0.946	INTRON CG9090	TF binding site mE1_TFBS_cad
3L	15507020	3L_15507020_SNP [dm3] 3L_15513920_SNP [dm6]	G	A	4.006e^-4	0.946	DOWNSTREAM Eip71CD INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	4821047	3L_4821047_SNP [dm3] 3L_4821047_SNP [dm6]	G	T	4.011e^-4	0.946	SPLICE_SITE_REGION Dhc64C INTRON Dhc64C
2R	3422052	2R_3422052_SNP [dm3] 2R_7534547_SNP [dm6]	C	A	4.039e^-4	0.946	UPSTREAM Cyt-b5 INTRON Cyt-b5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
X	14681913	X_14681913_SNP [dm3] X_14787880_SNP [dm6]	C	T	4.055e^-4	0.946	UTR_3_PRIME rut EXON CR45522
3R	20125375	3R_20125375_SNP [dm3] 3R_24299653_SNP [dm6]	C	T	4.059e^-4	0.946	INTRON crb	TF binding site BDTNP1_TFBS_dl
3R	20125382	3R_20125382_SNP [dm3] 3R_24299660_SNP [dm6]	G	A	4.059e^-4	0.946	INTRON crb	TF binding site BDTNP1_TFBS_dl
2L	17553546	2L_17553546_SNP [dm3] 2L_17553546_SNP [dm6]	C	T	4.062e^-4	0.946	DOWNSTREAM CG7094 INTERGENIC
2R	20273724	2R_20273724_SNP [dm3] 2R_24386201_SNP [dm6]	G	T	4.068e^-4	0.946	INTRON mAChR-A
3L	12141399	3L_12141399_DEL [dm3] 3L_12148299_DEL [dm6]	AGTAAAATA	T	4.074e^-4	0.946	UPSTREAM eap INTRON Nrx-IV
2R	19499763	2R_19499763_SNP [dm3] 2R_23612240_SNP [dm6]	T	C	4.076e^-4	0.946	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	11312955	X_11312955_SNP [dm3] X_11418922_SNP [dm6]	A	T	4.079e^-4	0.946	INTERGENIC
3L	5224374	3L_5224374_SNP [dm3] 3L_5231274_SNP [dm6]	C	T	4.092e^-4	0.946	INTRON shep
2L	7397105	2L_7397105_SNP [dm3] 2L_7397105_SNP [dm6]	C	T	4.093e^-4	0.946	INTRON CG5160
3R	16238990	3R_16238990_SNP [dm3] 3R_20413268_SNP [dm6]	C	G	4.106e^-4	0.946	INTRON Gfrl
2R	19352323	2R_19352323_SNP [dm3] 2R_23464800_SNP [dm6]	T	A	4.106e^-4	0.946	INTRON CG43795
3R	25934707	3R_25934707_DEL [dm3] 3R_30108985_DEL [dm6]	ATTTA	A	4.117e^-4	0.946	INTRON sima	TF binding site mE1_TFBS_cad
3R	12725223	3R_12725223_SNP [dm3] 3R_16899501_SNP [dm6]	C	A	4.120e^-4	0.946	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	13343853	X_13343853_INS [dm3] X_13449820_INS [dm6]	T	TCTTT	4.128e^-4	0.946	INTRON Neto	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4793951	X_4793951_SNP [dm3] X_4899918_SNP [dm6]	G	A	4.135e^-4	0.946	INTRON CG42594
3L	16452272	3L_16452272_INS [dm3] 3L_16459172_INS [dm6]	A	AGA	4.138e^-4	0.946	INTRON CG33158
2L	17566544	2L_17566544_SNP [dm3] 2L_17566544_SNP [dm6]	A	T	4.158e^-4	0.946	DOWNSTREAM mir-124 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12021758	X_12021758_SNP [dm3] X_12127725_SNP [dm6]	C	G	4.165e^-4	0.946	UPSTREAM Ten-a INTRON Ten-a
3L	13945259	3L_13945259_SNP [dm3] 3L_13952159_SNP [dm6]	T	A	4.165e^-4	0.946	INTRON CG32137
3R	13442836	3R_13442836_DEL [dm3] 3R_17617114_DEL [dm6]	TTGTAAATTA	T	4.167e^-4	0.946	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	9610764	3R_9610764_SNP [dm3] 3R_13785042_SNP [dm6]	C	T	4.171e^-4	0.946	SYNONYMOUS_CODING Dip-B DOWNSTREAM CR45590	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13258775	2L_13258775_DEL [dm3] 2L_13258775_DEL [dm6]	GTATATG	G	4.173e^-4	0.946	DOWNSTREAM CG31730 & 1 other INTERGENIC
X	15265002	X_15265002_SNP [dm3] X_15370969_SNP [dm6]	G	A	4.176e^-4	0.946	INTRON acj6
2R	5151950	2R_5151950_SNP [dm3] 2R_9264445_SNP [dm6]	C	T	4.181e^-4	0.946	UPSTREAM CG34141 INTRON Pkn
X	6159384	X_6159384_SNP [dm3] X_6265351_SNP [dm6]	C	A	4.182e^-4	0.946	INTRON schlank	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7157764	3L_7157764_INS [dm3] 3L_7164664_INS [dm6]	A	AAAATGATCAGA...	4.184e^-4	0.946	INTRON Dscam2
2L	2797817	2L_2797817_INS [dm3] 2L_2797817_INS [dm6]	C	CT	4.185e^-4	0.946	UPSTREAM CR43821 INTRON Syt1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	7339080	2L_7339080_SNP [dm3] 2L_7339080_SNP [dm6]	G	A	4.191e^-4	0.946	INTRON Wnt6
3L	6980583	3L_6980583_SNP [dm3] 3L_6987483_SNP [dm6]	A	G	4.210e^-4	0.946	INTERGENIC
2L	12388015	2L_12388015_SNP [dm3] 2L_12388015_SNP [dm6]	T	C	4.222e^-4	0.946	INTRON bru-2
3L	5223765	3L_5223765_SNP [dm3] 3L_5230665_SNP [dm6]	A	T	4.231e^-4	0.946	INTRON shep
3R	15154191	3R_15154191_SNP [dm3] 3R_19328469_SNP [dm6]	T	A	4.237e^-4	0.946	UPSTREAM CR44175 INTERGENIC
2R	19447141	2R_19447141_SNP [dm3] 2R_23559618_SNP [dm6]	C	T	4.244e^-4	0.946	NON_SYNONYMOUS_CODING ItgalphaPS5 UPSTREAM Pi3K59F	TF binding site mE1_TFBS_sens
3L	10130997	3L_10130997_SNP [dm3] 3L_10137897_SNP [dm6]	G	T	4.263e^-4	0.946	INTRON dpr6
2L	6770049	2L_6770049_SNP [dm3] 2L_6770049_SNP [dm6]	T	C	4.277e^-4	0.946	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19487716	2R_19487716_SNP [dm3] 2R_23600193_SNP [dm6]	G	C	4.277e^-4	0.946	SYNONYMOUS_CODING CG42559 UTR_5_PRIME CG42560 UPSTREAM CG42560 DOWNSTREAM apt & 2 others
3R	11111720	3R_11111720_SNP [dm3] 3R_15285998_SNP [dm6]	G	T	4.278e^-4	0.946	UPSTREAM Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2424469	2L_2424469_SNP [dm3] 2L_2424469_SNP [dm6]	A	G	4.282e^-4	0.946	UTR_3_PRIME CG9886 UPSTREAM CG44139
3L	14204344	3L_14204344_SNP [dm3] 3L_14211244_SNP [dm6]	G	A	4.284e^-4	0.946	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	3883534	3L_3883534_SNP [dm3] 3L_3883534_SNP [dm6]	A	G	4.285e^-4	0.946	DOWNSTREAM CR43917 INTERGENIC
3L	12369459	3L_12369459_SNP [dm3] 3L_12376359_SNP [dm6]	A	T	4.286e^-4	0.946	INTRON Ncc69
2L	4319242	2L_4319242_SNP [dm3] 2L_4319242_SNP [dm6]	T	C	4.286e^-4	0.946	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_cad
3R	6925780	3R_6925780_SNP [dm3] 3R_11100058_SNP [dm6]	A	T	4.301e^-4	0.946	INTERGENIC
3R	16239256	3R_16239256_SNP [dm3] 3R_20413534_SNP [dm6]	G	A	4.307e^-4	0.946	INTRON Gfrl
2L	3201612	2L_3201612_SNP [dm3] 2L_3201612_SNP [dm6]	A	C	4.310e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17732336	2R_17732336_DEL [dm3] 2R_21844831_DEL [dm6]	GTG	G	4.315e^-4	0.946	INTERGENIC
X	4793924	X_4793924_SNP [dm3] X_4899891_SNP [dm6]	C	G	4.315e^-4	0.946	INTRON CG42594
2L	10298712	2L_10298712_SNP [dm3] 2L_10298712_SNP [dm6]	T	G	4.321e^-4	0.946	UPSTREAM CYLD DOWNSTREAM CR44968 INTRON CYLD	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	12388741	X_12388741_SNP [dm3] X_12494708_SNP [dm6]	G	A	4.326e^-4	0.946	SYNONYMOUS_CODING Mks1
3R	4319797	3R_4319797_SNP [dm3] 3R_8494075_SNP [dm6]	G	A	4.328e^-4	0.946	INTERGENIC
3R	13443468	3R_13443468_SNP [dm3] 3R_17617746_SNP [dm6]	T	C	4.335e^-4	0.946	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	9850429	2L_9850429_SNP [dm3] 2L_9850429_SNP [dm6]	C	T	4.335e^-4	0.946	INTRON nAChRalpha6
3R	25946408	3R_25946408_SNP [dm3] 3R_30120686_SNP [dm6]	C	T	4.338e^-4	0.946	SYNONYMOUS_CODING sima UTR_3_PRIME sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13464135	X_13464135_SNP [dm3] X_13570102_SNP [dm6]	T	C	4.340e^-4	0.946	INTRON Tango13
2R	11833749	2R_11833749_SNP [dm3] 2R_15946244_SNP [dm6]	G	C	4.354e^-4	0.946	NON_SYNONYMOUS_CODING Cyp4aa1 DOWNSTREAM mir-4919 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9753839	3R_9753839_SNP [dm3] 3R_13928117_SNP [dm6]	T	C	4.354e^-4	0.946	INTERGENIC
2R	10207856	2R_10207856_SNP [dm3] 2R_14320351_SNP [dm6]	T	G	4.362e^-4	0.946	INTRON Shroom
3R	24431700	3R_24431700_SNP [dm3] 3R_28605978_SNP [dm6]	A	T	4.363e^-4	0.946	UPSTREAM CG9986 DOWNSTREAM Hrb98DE INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11039150	3L_11039150_SNP [dm3] 3L_11046050_SNP [dm6]	A	T	4.394e^-4	0.946	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	9171630	2L_9171630_SNP [dm3] 2L_9171630_SNP [dm6]	A	T	4.410e^-4	0.946	INTRON tai
3R	9882863	3R_9882863_SNP [dm3] 3R_14057141_SNP [dm6]	C	G	4.427e^-4	0.946	START_GAINED foxo UTR_5_PRIME foxo UPSTREAM foxo INTRON foxo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	10266288	3L_10266288_SNP [dm3] 3L_10273188_SNP [dm6]	G	A	4.430e^-4	0.946	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
3R	4132095	3R_4132095_SNP [dm3] 3R_8306373_SNP [dm6]	C	T	4.432e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	11146311	3L_11146311_SNP [dm3] 3L_11153211_SNP [dm6]	A	C	4.432e^-4	0.946	INTRON CG32082
3L	3883537	3L_3883537_SNP [dm3] 3L_3883537_SNP [dm6]	C	T	4.442e^-4	0.946	DOWNSTREAM CR43917 INTERGENIC
2L	2424784	2L_2424784_SNP [dm3] 2L_2424784_SNP [dm6]	A	C	4.442e^-4	0.946	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
2L	631219	2L_631219_SNP [dm3] 2L_631219_SNP [dm6]	C	A	4.444e^-4	0.946	INTERGENIC
2R	16775849	2R_16775849_SNP [dm3] 2R_20888344_SNP [dm6]	A	G	4.449e^-4	0.946	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	4820968	3L_4820968_SNP [dm3] 3L_4820968_SNP [dm6]	T	G	4.451e^-4	0.946	SYNONYMOUS_CODING Dhc64C
2L	19926794	2L_19926794_INS [dm3] 2L_19926794_INS [dm6]	T	TAAATAAGTAGACT...	4.467e^-4	0.946	INTRON sick
X	3371318	X_3371318_INS [dm3] X_3477285_INS [dm6]	A	ATATGTA	4.479e^-4	0.946	UTR_3_PRIME CG10804 INTRON CR44999
3R	10955669	3R_10955669_SNP [dm3] 3R_15129947_SNP [dm6]	T	C	4.483e^-4	0.946	DOWNSTREAM mir-2493 INTRON CG42788
3L	821098	3L_821098_SNP [dm3] 3L_821098_SNP [dm6]	A	T	4.484e^-4	0.946	EXON CR43883	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9490423	2R_9490423_SNP [dm3] 2R_13602918_SNP [dm6]	A	T	4.487e^-4	0.946	INTERGENIC
3R	9772864	3R_9772864_SNP [dm3] 3R_13947142_SNP [dm6]	A	T	4.510e^-4	0.946	INTERGENIC
2R	17458709	2R_17458709_SNP [dm3] 2R_21571204_SNP [dm6]	A	C	4.514e^-4	0.946	UTR_5_PRIME CG10440 INTRON CG10440	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6150015	3L_6150015_DEL [dm3] 3L_6156915_DEL [dm6]	TAGTC	ACA	4.517e^-4	0.946	INTRON CG13297
X	3429785	X_3429785_SNP [dm3] X_3535752_SNP [dm6]	C	T	4.524e^-4	0.946	INTRON CG32791	TF binding site mE1_TFBS_inv
2R	16962570	2R_16962570_SNP [dm3] 2R_21075065_SNP [dm6]	G	A	4.525e^-4	0.946	UPSTREAM Treh INTRON Treh	TF binding site mE1_TFBS_Trl
X	3999208	X_3999208_SNP [dm3] X_4105175_SNP [dm6]	G	A	4.529e^-4	0.946	SYNONYMOUS_CODING brn UPSTREAM Xpac & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17106156	2L_17106156_SNP [dm3] 2L_17106156_SNP [dm6]	T	C	4.531e^-4	0.946	DOWNSTREAM CR45448 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18164657	2R_18164657_SNP [dm3] 2R_22277152_SNP [dm6]	T	A	4.532e^-4	0.946	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16041104	3R_16041104_SNP [dm3] 3R_20215382_SNP [dm6]	A	G	4.544e^-4	0.946	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi
2R	17059107	2R_17059107_SNP [dm3] 2R_21171602_SNP [dm6]	T	C	4.545e^-4	0.946	UPSTREAM LSm1 INTRON Xpd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	10129361	3R_10129361_SNP [dm3] 3R_14303639_SNP [dm6]	G	A	4.546e^-4	0.946	SYNONYMOUS_CODING CG3259 DOWNSTREAM su_Hw_	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4132096	3R_4132096_SNP [dm3] 3R_8306374_SNP [dm6]	G	T	4.550e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	12816540	3L_12816540_SNP [dm3] 3L_12823440_SNP [dm6]	G	A	4.552e^-4	0.946	NON_SYNONYMOUS_CODING CG42588
2L	13228680	2L_13228680_SNP [dm3] 2L_13228680_SNP [dm6]	A	C	4.555e^-4	0.946	DOWNSTREAM CG16813 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12705243	3L_12705243_SNP [dm3] 3L_12712143_SNP [dm6]	A	T	4.556e^-4	0.946	INTERGENIC
3R	9550741	3R_9550741_SNP [dm3] 3R_13725019_SNP [dm6]	A	T	4.562e^-4	0.946	INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
X	22045489	X_22045489_SNP [dm3] X_22643653_SNP [dm6]	C	T	4.566e^-4	0.946	INTERGENIC
2L	918236	2L_918236_SNP [dm3] 2L_918236_SNP [dm6]	T	A	4.568e^-4	0.946	DOWNSTREAM GluRIIC INTERGENIC	TF binding site mE1_TFBS_cad
2R	16659519	2R_16659519_SNP [dm3] 2R_20772014_SNP [dm6]	C	T	4.568e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10780405	3L_10780405_SNP [dm3] 3L_10787305_SNP [dm6]	T	G	4.569e^-4	0.946	INTERGENIC
2L	7447954	2L_7447954_SNP [dm3] 2L_7447954_SNP [dm6]	G	A	4.579e^-4	0.946	UTR_5_PRIME santa-maria INTRON santa-maria
3R	24471452	3R_24471452_INS [dm3] 3R_28645730_INS [dm6]	C	CTATGCCTATGCC...	4.585e^-4	0.946	INTERGENIC
3R	7047974	3R_7047974_SNP [dm3] 3R_11222252_SNP [dm6]	T	C	4.596e^-4	0.946	SYNONYMOUS_CODING RpL3 UPSTREAM snoRNA:Me18S-C1096 & 2 others DOWNSTREAM CR31144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	9882832	3R_9882832_SNP [dm3] 3R_14057110_SNP [dm6]	C	A	4.603e^-4	0.946	UTR_5_PRIME foxo UPSTREAM foxo INTRON foxo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	6926425	3R_6926425_SNP [dm3] 3R_11100703_SNP [dm6]	G	A	4.605e^-4	0.946	UPSTREAM CR45579 INTERGENIC
2L	4584370	2L_4584370_SNP [dm3] 2L_4584370_SNP [dm6]	T	C	4.607e^-4	0.946	INTRON dp
3R	5478817	3R_5478817_SNP [dm3] 3R_9653095_SNP [dm6]	T	C	4.620e^-4	0.946	NON_SYNONYMOUS_CODING CG43441 INTRON CG9492
2R	13603019	2R_13603019_SNP [dm3] 2R_17715514_SNP [dm6]	G	C	4.622e^-4	0.946	INTRON CG6424	TF binding site BDTNP1_TFBS_dl
X	12104896	X_12104896_SNP [dm3] X_12210863_SNP [dm6]	A	G	4.623e^-4	0.946	INTRON Ten-a
2L	13082901	2L_13082901_SNP [dm3] 2L_13082901_SNP [dm6]	T	A	4.630e^-4	0.946	INTERGENIC
3L	1260217	3L_1260217_SNP [dm3] 3L_1260217_SNP [dm6]	G	A	4.640e^-4	0.946	INTRON CG9134
2R	14820452	2R_14820452_SNP [dm3] 2R_18932947_SNP [dm6]	G	C	4.648e^-4	0.946	INTRON sano
2L	11881231	2L_11881231_SNP [dm3] 2L_11881231_SNP [dm6]	T	C	4.649e^-4	0.946	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7906489	2L_7906489_SNP [dm3] 2L_7906489_SNP [dm6]	T	A	4.650e^-4	0.946	INTRON Snoo
2L	10620255	2L_10620255_SNP [dm3] 2L_10620255_SNP [dm6]	T	C	4.659e^-4	0.946	INTRON Trim9
X	9610264	X_9610264_DEL [dm3] X_9716231_DEL [dm6]	TT	T	4.662e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	14713081	3R_14713081_SNP [dm3] 3R_18887359_SNP [dm6]	C	T	4.664e^-4	0.946	INTERGENIC
3R	20124521	3R_20124521_INS [dm3] 3R_24298799_INS [dm6]	A	ATG	4.665e^-4	0.946	INTRON crb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15519736	2L_15519736_SNP [dm3] 2L_15519736_SNP [dm6]	T	C	4.674e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	22253459	3R_22253459_SNP [dm3] 3R_26427737_SNP [dm6]	A	T	4.680e^-4	0.946	UPSTREAM CR43434 INTRON CR31084
3L	446689	3L_446689_SNP [dm3] 3L_446689_SNP [dm6]	T	A	4.705e^-4	0.946	INTRON klar	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8856142	3L_8856142_DEL [dm3] 3L_8863042_DEL [dm6]	TT	T	4.708e^-4	0.946	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	9326364	2R_9326364_SNP [dm3] 2R_13438859_SNP [dm6]	A	T	4.712e^-4	0.946	UTR_5_PRIME CG42321 DOWNSTREAM tRNA:CR30509 & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	12356459	3L_12356459_DEL [dm3] 3L_12363359_DEL [dm6]	GTTGG	G	4.713e^-4	0.946	INTERGENIC
3L	8887281	3L_8887281_SNP [dm3] 3L_8894181_SNP [dm6]	A	C	4.715e^-4	0.946	UTR_3_PRIME Mcm7 DOWNSTREAM TrpA1
2L	2426568	2L_2426568_SNP [dm3] 2L_2426568_SNP [dm6]	G	A	4.717e^-4	0.946	DOWNSTREAM CR44912 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
4	558605	4_558605_SNP [dm3] 4_537979_SNP [dm6]	C	T	4.718e^-4	0.946	UTR_3_PRIME zfh2 DOWNSTREAM Thd1 INTRON zfh2	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2R	12039778	2R_12039778_SNP [dm3] 2R_16152273_SNP [dm6]	A	T	4.720e^-4	0.946	INTRON lbk	transposable element FlyBase
3L	18891729	3L_18891729_SNP [dm3] 3L_18898629_SNP [dm6]	A	C	4.741e^-4	0.946	UPSTREAM RpL26 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
3L	821114	3L_821114_SNP [dm3] 3L_821114_SNP [dm6]	A	T	4.742e^-4	0.946	EXON CR43883	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4798185	3L_4798185_SNP [dm3] 3L_4798185_SNP [dm6]	A	C	4.746e^-4	0.946	INTERGENIC
2R	12148279	2R_12148279_SNP [dm3] 2R_16260774_SNP [dm6]	A	T	4.748e^-4	0.946	UPSTREAM CngA INTERGENIC
2L	12534190	2L_12534190_SNP [dm3] 2L_12534190_SNP [dm6]	T	G	4.748e^-4	0.946	INTRON bun
2L	1287271	2L_1287271_SNP [dm3] 2L_1287271_SNP [dm6]	T	C	4.752e^-4	0.946	INTRON robo3
3R	13392303	3R_13392303_DEL [dm3] 3R_17566581_DEL [dm6]	TCGGCCAAGCT...	T	4.752e^-4	0.946	INTRON Hmx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	16866487	2R_16866487_SNP [dm3] 2R_20978982_SNP [dm6]	C	T	4.758e^-4	0.946	UTR_5_PRIME CG9313 UPSTREAM CG15650 & 1 other
2L	1232615	2L_1232615_SNP [dm3] 2L_1232615_SNP [dm6]	A	C	4.758e^-4	0.946	INTERGENIC
2R	19499750	2R_19499750_SNP [dm3] 2R_23612227_SNP [dm6]	A	T	4.769e^-4	0.946	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	22763324	3R_22763324_SNP [dm3] 3R_26937602_SNP [dm6]	T	C	4.771e^-4	0.946	INTRON sda
2L	13082843	2L_13082843_SNP [dm3] 2L_13082843_SNP [dm6]	C	G	4.772e^-4	0.946	INTERGENIC
2R	20290592	2R_20290592_SNP [dm3] 2R_24403069_SNP [dm6]	T	A	4.774e^-4	0.946	UTR_5_PRIME Rpn8 UPSTREAM slik	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3L	8317961	3L_8317961_SNP [dm3] 3L_8324861_SNP [dm6]	G	A	4.778e^-4	0.946	UPSTREAM CG34461 INTERGENIC
2L	1749177	2L_1749177_SNP [dm3] 2L_1749177_SNP [dm6]	G	A	4.780e^-4	0.946	INTRON CG17646
X	10023742	X_10023742_SNP [dm3] X_10129709_SNP [dm6]	C	T	4.782e^-4	0.946	INTRON CR44894 & 1 other
3L	14215448	3L_14215448_SNP [dm3] 3L_14222348_SNP [dm6]	T	C	4.791e^-4	0.946	INTRON nuf
2L	17566804	2L_17566804_SNP [dm3] 2L_17566804_SNP [dm6]	T	G	4.794e^-4	0.946	DOWNSTREAM mir-124 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1933340	2L_1933340_SNP [dm3] 2L_1933340_SNP [dm6]	G	A	4.803e^-4	0.946	INTRON CG7337
2L	11495994	2L_11495994_SNP [dm3] 2L_11495994_SNP [dm6]	A	G	4.806e^-4	0.946	DOWNSTREAM CG6488 INTERGENIC
2R	13819914	2R_13819914_SNP [dm3] 2R_17932409_SNP [dm6]	A	T	4.810e^-4	0.946	INTERGENIC
3R	5478755	3R_5478755_SNP [dm3] 3R_9653033_SNP [dm6]	A	T	4.811e^-4	0.946	NON_SYNONYMOUS_CODING CG43441 INTRON CG9492
2R	20270116	2R_20270116_SNP [dm3] 2R_24382593_SNP [dm6]	C	T	4.814e^-4	0.946	INTRON mAChR-A	TF binding site mE1_TFBS_chinmo
3L	8853133	3L_8853133_SNP [dm3] 3L_8860033_SNP [dm6]	C	G	4.831e^-4	0.946	INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	27556114	3R_27556114_SNP [dm3] 3R_31730392_SNP [dm6]	C	T	4.867e^-4	0.946	SYNONYMOUS_CODING ttk INTRON ttk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27565079	3R_27565079_DEL [dm3] 3R_31739357_DEL [dm6]	CT	A	4.867e^-4	0.946	UPSTREAM Ef1alpha100E INTRON Ef1alpha100E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	27575876	3R_27575876_SNP [dm3] 3R_31750154_SNP [dm6]	G	A	4.867e^-4	0.946	NON_SYNONYMOUS_CODING CG1910	TF binding site mE1_TFBS_sens
3R	27587549	3R_27587549_SNP [dm3] 3R_31761827_SNP [dm6]	C	T	4.867e^-4	0.946	UPSTREAM Smvt INTERGENIC
3R	27784891	3R_27784891_SNP [dm3] 3R_31959169_SNP [dm6]	G	A	4.867e^-4	0.946	INTRON heph
3R	27574087	3R_27574087_SNP [dm3] 3R_31748365_SNP [dm6]	C	A	4.870e^-4	0.946	UPSTREAM CG1910 & 1 other INTRON CG1910	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	12612516	2L_12612516_SNP [dm3] 2L_12612516_SNP [dm6]	A	C	4.874e^-4	0.946	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	7906364	X_7906364_SNP [dm3] X_8012331_SNP [dm6]	A	T	4.888e^-4	0.946	INTRON Tbh
2L	2812861	2L_2812861_SNP [dm3] 2L_2812861_SNP [dm6]	T	C	4.892e^-4	0.946	SYNONYMOUS_CODING CG2964 DOWNSTREAM daw	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
3R	20115175	3R_20115175_SNP [dm3] 3R_24289453_SNP [dm6]	C	T	4.893e^-4	0.946	SPLICE_SITE_REGION CG34290 SYNONYMOUS_CODING CG34290 UPSTREAM CG6364 DOWNSTREAM CG6356	TF binding site mE1_TFBS_HSA
3R	27569867	3R_27569867_SNP [dm3] 3R_31744145_SNP [dm6]	C	T	4.897e^-4	0.946	UTR_3_PRIME CG1890 UPSTREAM CG1896 DOWNSTREAM Ef1alpha100E	TF binding site BDTNP1_TFBS_dl
X	6245040	X_6245040_SNP [dm3] X_6351007_SNP [dm6]	G	A	4.899e^-4	0.946	UPSTREAM CG3446 INTRON kdn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	2662911	X_2662911_SNP [dm3] X_2768878_SNP [dm6]	A	T	4.903e^-4	0.946	INTRON kirre
2R	13603037	2R_13603037_DEL [dm3] 2R_17715532_DEL [dm6]	ATTA	A	4.907e^-4	0.946	INTRON CG6424	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	25532794	3R_25532794_DEL [dm3] 3R_29707072_DEL [dm6]	AC	A	4.911e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25532797	3R_25532797_SNP [dm3] 3R_29707075_SNP [dm6]	C	A	4.911e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12422050	3R_12422050_SNP [dm3] 3R_16596328_SNP [dm6]	C	T	4.913e^-4	0.946	SYNONYMOUS_CODING CG14892 DOWNSTREAM CG10345	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	23006293	3R_23006293_SNP [dm3] 3R_27180571_SNP [dm6]	G	A	4.915e^-4	0.946	INTRON Ser	TF binding site mE1_TFBS_chinmo
X	9594843	X_9594843_SNP [dm3] X_9700810_SNP [dm6]	T	C	4.916e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10332454	2R_10332454_SNP [dm3] 2R_14444949_SNP [dm6]	T	G	4.922e^-4	0.946	INTRON Oaz
3L	12068825	3L_12068825_DEL [dm3] 3L_12075725_DEL [dm6]	CC	C	4.938e^-4	0.946	INTRON Sema-5c
2L	9605110	2L_9605110_SNP [dm3] 2L_9605110_SNP [dm6]	T	A	4.949e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs
2L	14731700	2L_14731700_SNP [dm3] 2L_14731700_SNP [dm6]	G	A	4.950e^-4	0.946	DOWNSTREAM CR44857 INTERGENIC
3L	5480302	3L_5480302_SNP [dm3] 3L_5487202_SNP [dm6]	T	A	4.953e^-4	0.946	INTERGENIC
3L	11146175	3L_11146175_SNP [dm3] 3L_11153075_SNP [dm6]	A	G	4.956e^-4	0.946	INTRON CG32082
3R	16041602	3R_16041602_SNP [dm3] 3R_20215880_SNP [dm6]	A	T	4.959e^-4	0.946	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi
2R	11503981	2R_11503981_SNP [dm3] 2R_15616476_SNP [dm6]	G	A	4.972e^-4	0.946	INTRON CG42524
3R	13935386	3R_13935386_SNP [dm3] 3R_18109664_SNP [dm6]	G	A	4.985e^-4	0.946	DOWNSTREAM tRNA:CR31242 & 1 other INTRON sr
X	4330154	X_4330154_SNP [dm3] X_4436121_SNP [dm6]	A	C	4.990e^-4	0.946	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	25930610	3R_25930610_SNP [dm3] 3R_30104888_SNP [dm6]	A	G	4.992e^-4	0.946	INTRON sima
X	9283975	X_9283975_SNP [dm3] X_9389942_SNP [dm6]	A	T	4.997e^-4	0.946	INTRON mgl
2R	20146609	2R_20146609_SNP [dm3] 2R_24259086_SNP [dm6]	G	A	5.009e^-4	0.946	INTRON CG3376
2L	12166442	2L_12166442_SNP [dm3] 2L_12166442_SNP [dm6]	C	T	5.012e^-4	0.946	SYNONYMOUS_CODING ZnT33D UTR_3_PRIME ZnT33D INTRON CG31760
3R	22268012	3R_22268012_SNP [dm3] 3R_26442290_SNP [dm6]	T	C	5.013e^-4	0.946	INTRON tx
X	7614807	X_7614807_SNP [dm3] X_7720774_SNP [dm6]	A	T	5.023e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13929476	3L_13929476_SNP [dm3] 3L_13936376_SNP [dm6]	A	T	5.044e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14723216	2L_14723216_SNP [dm3] 2L_14723216_SNP [dm6]	A	T	5.044e^-4	0.946	INTERGENIC
X	19164167	X_19164167_SNP [dm3] X_19270134_SNP [dm6]	T	C	5.068e^-4	0.946	SYNONYMOUS_CODING Vav	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_sens
3R	14449297	3R_14449297_SNP [dm3] 3R_18623575_SNP [dm6]	G	C	5.086e^-4	0.946	INTRON qin
2L	4136275	2L_4136275_SNP [dm3] 2L_4136275_SNP [dm6]	C	T	5.086e^-4	0.946	INTERGENIC
3L	13128298	3L_13128298_SNP [dm3] 3L_13135198_SNP [dm6]	T	C	5.090e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9943181	2R_9943181_SNP [dm3] 2R_14055676_SNP [dm6]	C	T	5.097e^-4	0.946	INTRON mam	TF binding site mE1_TFBS_cad
3L	6983382	3L_6983382_DEL [dm3] 3L_6990282_DEL [dm6]	TT	T	5.102e^-4	0.946	UPSTREAM bin INTERGENIC	TF binding site mE1_TFBS_Trl
3R	13438554	3R_13438554_SNP [dm3] 3R_17612832_SNP [dm6]	T	C	5.110e^-4	0.946	UPSTREAM CG34281 & 1 other INTERGENIC
3R	13438742	3R_13438742_SNP [dm3] 3R_17613020_SNP [dm6]	T	C	5.110e^-4	0.946	NON_SYNONYMOUS_CODING CG34281 UPSTREAM CG14327
3R	13438743	3R_13438743_SNP [dm3] 3R_17613021_SNP [dm6]	G	A	5.110e^-4	0.946	SYNONYMOUS_CODING CG34281 UPSTREAM CG14327
3R	13438962	3R_13438962_SNP [dm3] 3R_17613240_SNP [dm6]	C	T	5.110e^-4	0.946	SYNONYMOUS_CODING CG34281 UPSTREAM CG14327
3R	13439249	3R_13439249_SNP [dm3] 3R_17613527_SNP [dm6]	C	T	5.110e^-4	0.946	UPSTREAM CG14327 DOWNSTREAM CG34281 INTERGENIC
2L	4499539	2L_4499539_SNP [dm3] 2L_4499539_SNP [dm6]	C	A	5.117e^-4	0.946	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	4852921	3L_4852921_SNP [dm3] 3L_4852921_SNP [dm6]	C	G	5.120e^-4	0.946	UPSTREAM CG32237 INTERGENIC
X	18022544	X_18022544_SNP [dm3] X_18128511_SNP [dm6]	A	T	5.121e^-4	0.946	DOWNSTREAM mir-210 INTERGENIC
3L	14205795	3L_14205795_SNP [dm3] 3L_14212695_SNP [dm6]	T	A	5.141e^-4	0.946	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3L	9250087	3L_9250087_SNP [dm3] 3L_9256987_SNP [dm6]	T	G	5.149e^-4	0.946	INTRON GluRIB
2R	4879836	2R_4879836_SNP [dm3] 2R_8992331_SNP [dm6]	A	T	5.149e^-4	0.946	DOWNSTREAM Np INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	22410746	3R_22410746_SNP [dm3] 3R_26585024_SNP [dm6]	C	T	5.152e^-4	0.946	NON_SYNONYMOUS_CODING scrib INTRON scrib	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17566296	2L_17566296_SNP [dm3] 2L_17566296_SNP [dm6]	C	T	5.156e^-4	0.946	UPSTREAM mir-124 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7488033	2L_7488033_SNP [dm3] 2L_7488033_SNP [dm6]	A	C	5.165e^-4	0.946	INTRON Ziz
3L	962557	3L_962557_SNP [dm3] 3L_962557_SNP [dm6]	T	G	5.173e^-4	0.946	INTRON Glut1
2L	6732795	2L_6732795_SNP [dm3] 2L_6732795_SNP [dm6]	C	T	5.182e^-4	0.946	UPSTREAM TTLL3B DOWNSTREAM Liprin-alpha INTERGENIC
3L	4034177	3L_4034177_SNP [dm3] 3L_4034177_SNP [dm6]	G	A	5.185e^-4	0.946	SYNONYMOUS_CODING Gr64e UTR_3_PRIME Gr64d DOWNSTREAM Gr64d EXON CR45042
3L	1274797	3L_1274797_SNP [dm3] 3L_1274797_SNP [dm6]	C	A	5.191e^-4	0.946	DOWNSTREAM CG9134 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	10433448	3R_10433448_SNP [dm3] 3R_14607726_SNP [dm6]	C	A	5.194e^-4	0.946	UTR_3_PRIME stumps
3L	18325597	3L_18325597_SNP [dm3] 3L_18332497_SNP [dm6]	A	G	5.197e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	21290441	3R_21290441_SNP [dm3] 3R_25464719_SNP [dm6]	A	G	5.200e^-4	0.946	INTRON Fur1
2R	10013890	2R_10013890_SNP [dm3] 2R_14126385_SNP [dm6]	G	A	5.204e^-4	0.946	INTRON Prosap
3L	18782525	3L_18782525_SNP [dm3] 3L_18789425_SNP [dm6]	C	A	5.213e^-4	0.946	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl
4	358925	4_358925_SNP [dm3] 4_338299_SNP [dm6]	T	G	5.224e^-4	0.946	INTRON PMCA
3L	6618722	3L_6618722_SNP [dm3] 3L_6625622_SNP [dm6]	G	A	5.226e^-4	0.946	INTRON GluRIA
2L	8947163	2L_8947163_SNP [dm3] 2L_8947163_SNP [dm6]	T	A	5.227e^-4	0.946	UPSTREAM C1GalTA INTRON C1GalTA
2L	926904	2L_926904_SNP [dm3] 2L_926904_SNP [dm6]	T	G	5.238e^-4	0.946	INTRON CG4341
2R	16073571	2R_16073571_SNP [dm3] 2R_20186066_SNP [dm6]	A	G	5.239e^-4	0.946	INTERGENIC
3L	4034144	3L_4034144_SNP [dm3] 3L_4034144_SNP [dm6]	C	A	5.243e^-4	0.946	DOWNSTREAM Gr64d INTRON Gr64d & 1 other EXON CR45042
3L	4034149	3L_4034149_DEL [dm3] 3L_4034149_DEL [dm6]	ACG	A	5.243e^-4	0.946	DOWNSTREAM Gr64d INTRON Gr64d & 1 other EXON CR45042
3R	9553794	3R_9553794_SNP [dm3] 3R_13728072_SNP [dm6]	C	A	5.243e^-4	0.946	INTRON CG34383
2R	8356377	2R_8356377_SNP [dm3] 2R_12468872_SNP [dm6]	C	T	5.246e^-4	0.946	UPSTREAM dgt5 INTRON dgt5 & 1 other	TF binding site mE1_TFBS_HSA
3R	10129350	3R_10129350_SNP [dm3] 3R_14303628_SNP [dm6]	C	A	5.249e^-4	0.946	NON_SYNONYMOUS_CODING CG3259 DOWNSTREAM su_Hw_	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18932205	2R_18932205_SNP [dm3] 2R_23044682_SNP [dm6]	T	A	5.263e^-4	0.946	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	1600574	3L_1600574_SNP [dm3] 3L_1600574_SNP [dm6]	C	T	5.264e^-4	0.946	UTR_3_PRIME CG13917 DOWNSTREAM CG12104 & 1 other
3L	17045886	3L_17045886_SNP [dm3] 3L_17052786_SNP [dm6]	T	A	5.277e^-4	0.946	SYNONYMOUS_CODING rogdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5601565	3R_5601565_SNP [dm3] 3R_9775843_SNP [dm6]	G	A	5.282e^-4	0.946	SYNONYMOUS_CODING topi	TF binding site mE1_TFBS_chinmo
2L	13082899	2L_13082899_SNP [dm3] 2L_13082899_SNP [dm6]	T	A	5.294e^-4	0.946	INTERGENIC
2L	6732789	2L_6732789_SNP [dm3] 2L_6732789_SNP [dm6]	A	G	5.294e^-4	0.946	UPSTREAM TTLL3B DOWNSTREAM Liprin-alpha INTERGENIC
2R	14169800	2R_14169800_SNP [dm3] 2R_18282295_SNP [dm6]	A	G	5.300e^-4	0.946	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

Paraquat_Climbing phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results