DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.252e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.06011

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.8982	0.0483

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2062 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	1402237	3L_1402237_SNP [dm3] 3L_1402237_SNP [dm6]	G	A	4.197e^-7	0.588	DOWNSTREAM tRNA:E4:62Ad & 2 others INTRON Ptp61F	TF binding site mE1_TFBS_HSA
3R	16020028	3R_16020028_SNP [dm3] 3R_20194306_SNP [dm6]	C	G	1.295e^-6	0.588	INTERGENIC
3L	1402125	3L_1402125_SNP [dm3] 3L_1402125_SNP [dm6]	C	A	1.402e^-6	0.588	DOWNSTREAM tRNA:E4:62Ad & 2 others INTRON Ptp61F	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	18914456	3L_18914456_SNP [dm3] 3L_18921356_SNP [dm6]	G	C	1.527e^-6	0.588	SYNONYMOUS_CODING CG3819	TF binding site mE1_TFBS_cad
3L	1402123	3L_1402123_SNP [dm3] 3L_1402123_SNP [dm6]	C	T	1.569e^-6	0.588	DOWNSTREAM tRNA:E4:62Ad & 2 others INTRON Ptp61F	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15137983	3R_15137983_SNP [dm3] 3R_19312261_SNP [dm6]	G	A	2.241e^-6	0.607	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13708418	2L_13708418_SNP [dm3] 2L_13708418_SNP [dm6]	T	C	2.315e^-6	0.607	UTR_5_PRIME CG7311 INTRON CG31814	TF binding site mE1_TFBS_inv
3L	13929147	3L_13929147_SNP [dm3] 3L_13936047_SNP [dm6]	T	C	2.591e^-6	0.607	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13867070	X_13867070_SNP [dm3] X_13973037_SNP [dm6]	C	T	3.841e^-6	0.696	INTRON mamo
3R	6930497	3R_6930497_SNP [dm3] 3R_11104775_SNP [dm6]	A	T	3.925e^-6	0.696	INTERGENIC
X	13867075	X_13867075_INS [dm3] X_13973042_INS [dm6]	A	AT	4.085e^-6	0.696	INTRON mamo
2L	2419105	2L_2419105_SNP [dm3] 2L_2419105_SNP [dm6]	T	C	5.046e^-6	0.788	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16020029	3R_16020029_DEL [dm3] 3R_20194307_DEL [dm6]	GCCATCA	G	5.958e^-6	0.815	INTERGENIC
3R	4820643	3R_4820643_SNP [dm3] 3R_8994921_SNP [dm6]	C	A	7.264e^-6	0.815	UTR_3_PRIME CG11975 DOWNSTREAM CG31100 & 1 other
3R	9340479	3R_9340479_DEL [dm3] 3R_13514757_DEL [dm6]	TG	C	7.281e^-6	0.815	INTERGENIC
3R	6926668	3R_6926668_SNP [dm3] 3R_11100946_SNP [dm6]	A	C	7.639e^-6	0.815	UPSTREAM CR45579 INTERGENIC
2R	18801389	2R_18801389_SNP [dm3] 2R_22913866_SNP [dm6]	A	T	8.470e^-6	0.815	INTRON nahoda
2L	7582875	2L_7582875_SNP [dm3] 2L_7582875_SNP [dm6]	C	T	8.582e^-6	0.815	INTRON Spn28B
2R	17452381	2R_17452381_DEL [dm3] 2R_21564876_DEL [dm6]	AGA	A	8.878e^-6	0.815	INTRON CG10440
2R	17452514	2R_17452514_SNP [dm3] 2R_21565009_SNP [dm6]	A	G	8.994e^-6	0.815	INTRON CG10440
2L	13708932	2L_13708932_SNP [dm3] 2L_13708932_SNP [dm6]	G	T	9.617e^-6	0.815	INTRON CG31814 & 1 other	TF binding site mE1_TFBS_inv
3R	6926659	3R_6926659_SNP [dm3] 3R_11100937_SNP [dm6]	A	C	9.772e^-6	0.815	UPSTREAM CR45579 INTERGENIC
3L	1402051	3L_1402051_DEL [dm3] 3L_1402051_DEL [dm6]	ATAATCTCTA	A	1.118e^-5	0.815	DOWNSTREAM tRNA:E4:62Ad & 2 others INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	13708423	2L_13708423_SNP [dm3] 2L_13708423_SNP [dm6]	G	A	1.133e^-5	0.815	UTR_5_PRIME CG7311 INTRON CG31814	TF binding site mE1_TFBS_inv
2L	2419042	2L_2419042_SNP [dm3] 2L_2419042_SNP [dm6]	G	T	1.154e^-5	0.815	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_sens
2L	11198371	2L_11198371_SNP [dm3] 2L_11198371_SNP [dm6]	T	A	1.208e^-5	0.815	INTRON Ca-beta
2L	1748623	2L_1748623_SNP [dm3] 2L_1748623_SNP [dm6]	G	C	1.214e^-5	0.815	INTRON CG17646
X	7882885	X_7882885_SNP [dm3] X_7988852_SNP [dm6]	T	C	1.218e^-5	0.815	INTERGENIC
2L	13082829	2L_13082829_SNP [dm3] 2L_13082829_SNP [dm6]	G	A	1.329e^-5	0.839	INTERGENIC
3L	11702544	3L_11702544_SNP [dm3] 3L_11709444_SNP [dm6]	A	G	1.536e^-5	0.839	UPSTREAM CG11658 INTRON Ccdc56 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4822941	3R_4822941_SNP [dm3] 3R_8997219_SNP [dm6]	T	A	1.553e^-5	0.839	UPSTREAM CG11977 INTRON CG31100
3R	6926647	3R_6926647_DEL [dm3] 3R_11100925_DEL [dm6]	TTAGAAA	G	1.605e^-5	0.839	UPSTREAM CR45579 INTERGENIC
2L	7582857	2L_7582857_SNP [dm3] 2L_7582857_SNP [dm6]	T	C	1.607e^-5	0.839	INTRON Spn28B
3R	23207486	3R_23207486_SNP [dm3] 3R_27381764_SNP [dm6]	C	T	1.610e^-5	0.839	UTR_3_PRIME side INTRON side
X	13867065	X_13867065_SNP [dm3] X_13973032_SNP [dm6]	C	T	1.656e^-5	0.839	INTRON mamo
2R	10034388	2R_10034388_SNP [dm3] 2R_14146883_SNP [dm6]	A	C	1.665e^-5	0.839	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	12148290	2R_12148290_SNP [dm3] 2R_16260785_SNP [dm6]	A	T	1.783e^-5	0.839	UPSTREAM CngA INTERGENIC
3R	4820292	3R_4820292_SNP [dm3] 3R_8994570_SNP [dm6]	T	C	1.794e^-5	0.839	SYNONYMOUS_CODING CG11975 DOWNSTREAM CG31100
X	13867079	X_13867079_DEL [dm3] X_13973046_DEL [dm6]	GGTGATCTCATA...	G	1.826e^-5	0.839	INTRON mamo
3L	18913471	3L_18913471_SNP [dm3] 3L_18920371_SNP [dm6]	A	G	1.832e^-5	0.839	UPSTREAM CG18223 DOWNSTREAM CG3819 INTERGENIC
2L	2424463	2L_2424463_INS [dm3] 2L_2424463_INS [dm6]	A	AA	1.835e^-5	0.839	UTR_3_PRIME CG9886 UPSTREAM CG44139
2R	17452459	2R_17452459_SNP [dm3] 2R_21564954_SNP [dm6]	C	T	1.907e^-5	0.839	INTRON CG10440
3R	10855776	3R_10855776_SNP [dm3] 3R_15030054_SNP [dm6]	C	A	1.925e^-5	0.839	INTERGENIC	TF binding site mE1_TFBS_inv
2L	2256587	2L_2256587_SNP [dm3] 2L_2256587_SNP [dm6]	C	T	2.067e^-5	0.848	INTERGENIC
3R	25946408	3R_25946408_SNP [dm3] 3R_30120686_SNP [dm6]	C	T	2.100e^-5	0.848	SYNONYMOUS_CODING sima UTR_3_PRIME sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18762021	2R_18762021_SNP [dm3] 2R_22874498_SNP [dm6]	A	G	2.130e^-5	0.848	UPSTREAM PIP5K59B DOWNSTREAM CR45469 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2424473	2L_2424473_SNP [dm3] 2L_2424473_SNP [dm6]	C	T	2.298e^-5	0.848	UTR_3_PRIME CG9886 UPSTREAM CG44139
2R	11833661	2R_11833661_SNP [dm3] 2R_15946156_SNP [dm6]	A	C	2.315e^-5	0.848	SYNONYMOUS_CODING Cyp4aa1 DOWNSTREAM mir-4919 & 1 other	TF binding site mE1_TFBS_sens
2R	18157692	2R_18157692_SNP [dm3] 2R_22270187_SNP [dm6]	A	C	2.334e^-5	0.848	UPSTREAM dve INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	25930610	3R_25930610_SNP [dm3] 3R_30104888_SNP [dm6]	A	G	2.335e^-5	0.848	INTRON sima
X	4793688	X_4793688_SNP [dm3] X_4899655_SNP [dm6]	G	C	2.335e^-5	0.848	INTRON CG42594	TF binding site mE1_TFBS_HSA
3R	23207459	3R_23207459_SNP [dm3] 3R_27381737_SNP [dm6]	T	C	2.378e^-5	0.848	UTR_3_PRIME side INTRON side
2L	11528870	2L_11528870_DEL [dm3] 2L_11528870_DEL [dm6]	TTT	T	2.411e^-5	0.848	UPSTREAM CG31705 DOWNSTREAM CG31706 INTERGENIC
3R	10966643	3R_10966643_SNP [dm3] 3R_15140921_SNP [dm6]	C	G	2.456e^-5	0.848	SYNONYMOUS_CODING CG3987 UPSTREAM CR45600 DOWNSTREAM GlyS	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16852742	2L_16852742_SNP [dm3] 2L_16852742_SNP [dm6]	T	C	2.488e^-5	0.848	UPSTREAM CG31810 DOWNSTREAM CG31809 INTERGENIC
X	7903375	X_7903375_SNP [dm3] X_8009342_SNP [dm6]	T	C	2.607e^-5	0.862	INTRON Tbh
3L	9940430	3L_9940430_SNP [dm3] 3L_9947330_SNP [dm6]	G	C	2.623e^-5	0.862	INTRON CG34356
3R	5376033	3R_5376033_SNP [dm3] 3R_9550311_SNP [dm6]	A	G	2.737e^-5	0.862	INTRON mura & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10829147	3L_10829147_SNP [dm3] 3L_10836047_SNP [dm6]	A	G	2.803e^-5	0.862	INTERGENIC
2L	3529530	2L_3529530_SNP [dm3] 2L_3529530_SNP [dm6]	T	A	2.882e^-5	0.862	SPLICE_SITE_REGION Spindly INTRON Spindly	TF binding site mE1_TFBS_sens
X	10446569	X_10446569_SNP [dm3] X_10552536_SNP [dm6]	G	C	2.925e^-5	0.862	INTRON spri
3R	18703549	3R_18703549_SNP [dm3] 3R_22877827_SNP [dm6]	A	G	2.928e^-5	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2522431	2L_2522431_SNP [dm3] 2L_2522431_SNP [dm6]	G	A	3.028e^-5	0.862	INTERGENIC
X	17250044	X_17250044_SNP [dm3] X_17356011_SNP [dm6]	C	T	3.035e^-5	0.862	INTERGENIC
2R	17452414	2R_17452414_SNP [dm3] 2R_21564909_SNP [dm6]	T	A	3.070e^-5	0.862	INTRON CG10440
2L	14372505	2L_14372505_SNP [dm3] 2L_14372505_SNP [dm6]	A	T	3.076e^-5	0.862	INTERGENIC
3L	14202312	3L_14202312_SNP [dm3] 3L_14209212_SNP [dm6]	C	T	3.081e^-5	0.862	INTRON nuf
2L	9855206	2L_9855206_SNP [dm3] 2L_9855206_SNP [dm6]	C	T	3.203e^-5	0.87	INTRON nAChRalpha6
X	4793963	X_4793963_SNP [dm3] X_4899930_SNP [dm6]	A	G	3.204e^-5	0.87	INTRON CG42594
2R	18157656	2R_18157656_SNP [dm3] 2R_22270151_SNP [dm6]	A	T	3.255e^-5	0.872	UPSTREAM dve INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	2354330	2R_2354330_SNP [dm3] 2R_6466825_SNP [dm6]	C	T	3.470e^-5	0.879	INTERGENIC	transposable element FlyBase
2L	17566265	2L_17566265_SNP [dm3] 2L_17566265_SNP [dm6]	G	C	3.549e^-5	0.879	UPSTREAM mir-124 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	18913570	3L_18913570_SNP [dm3] 3L_18920470_SNP [dm6]	A	T	3.724e^-5	0.879	UTR_3_PRIME CG3819 UPSTREAM CG18223 DOWNSTREAM CG3819
2L	10288766	2L_10288766_SNP [dm3] 2L_10288766_SNP [dm6]	A	C	3.759e^-5	0.879	NON_SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad
X	20838659	X_20838659_SNP [dm3] X_20967632_SNP [dm6]	A	G	3.776e^-5	0.879	INTERGENIC
3L	2591792	3L_2591792_SNP [dm3] 3L_2591792_SNP [dm6]	G	T	3.810e^-5	0.879	INTRON dos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	9589543	X_9589543_SNP [dm3] X_9695510_SNP [dm6]	C	T	3.848e^-5	0.879	INTRON btd	TF binding site BDTNP1_TFBS_dl
3R	6926656	3R_6926656_SNP [dm3] 3R_11100934_SNP [dm6]	C	G	3.885e^-5	0.879	UPSTREAM CR45579 INTERGENIC
2R	17836522	2R_17836522_DEL [dm3] 2R_21949017_DEL [dm6]	AGGAAAGGGTTCA...	A	3.986e^-5	0.879	INTERGENIC
2R	12286796	2R_12286796_SNP [dm3] 2R_16399291_SNP [dm6]	C	T	3.997e^-5	0.879	SYNONYMOUS_CODING Sema-2b	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18157671	2R_18157671_SNP [dm3] 2R_22270166_SNP [dm6]	T	A	4.089e^-5	0.879	UPSTREAM dve INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	9586639	X_9586639_SNP [dm3] X_9692606_SNP [dm6]	A	T	4.173e^-5	0.879	UPSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3R	23166521	3R_23166521_SNP [dm3] 3R_27340799_SNP [dm6]	C	G	4.189e^-5	0.879	NON_SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4496786	3L_4496786_SNP [dm3] 3L_4496786_SNP [dm6]	T	A	4.373e^-5	0.879	DOWNSTREAM CG13721 INTERGENIC	TF binding site mE1_TFBS_inv
3R	26219628	3R_26219628_SNP [dm3] 3R_30393906_SNP [dm6]	A	T	4.518e^-5	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	13442278	3R_13442278_SNP [dm3] 3R_17616556_SNP [dm6]	C	T	4.528e^-5	0.879	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
3R	15172277	3R_15172277_SNP [dm3] 3R_19346555_SNP [dm6]	C	A	4.540e^-5	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16031873	3R_16031873_SNP [dm3] 3R_20206151_SNP [dm6]	G	A	4.609e^-5	0.879	INTRON Nlg4
2L	3235361	2L_3235361_SNP [dm3] 2L_3235361_SNP [dm6]	T	C	4.618e^-5	0.879	INTERGENIC
X	9586373	X_9586373_DEL [dm3] X_9692340_DEL [dm6]	CAAAC	C	4.630e^-5	0.879	INTRON CR44016	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2757738	2L_2757738_DEL [dm3] 2L_2757738_DEL [dm6]	AT	A	4.651e^-5	0.879	UTR_3_PRIME Bacc DOWNSTREAM CR44772 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	3233789	2L_3233789_SNP [dm3] 2L_3233789_SNP [dm6]	C	T	4.655e^-5	0.879	INTERGENIC
X	16977067	X_16977067_SNP [dm3] X_17083034_SNP [dm6]	C	T	4.668e^-5	0.879	NON_SYNONYMOUS_CODING CG4955 INTRON CG8945
3L	2591249	3L_2591249_SNP [dm3] 3L_2591249_SNP [dm6]	T	C	4.839e^-5	0.879	UTR_5_PRIME dos INTRON dos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E
X	4793808	X_4793808_SNP [dm3] X_4899775_SNP [dm6]	T	C	4.894e^-5	0.879	INTRON CG42594
3R	13442613	3R_13442613_SNP [dm3] 3R_17616891_SNP [dm6]	C	G	4.914e^-5	0.879	UPSTREAM tRNA:V3b:90BC INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	11702080	3L_11702080_SNP [dm3] 3L_11708980_SNP [dm6]	T	C	4.943e^-5	0.879	UTR_5_PRIME Ccdc56 & 1 other UPSTREAM CG11658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1745855	2L_1745855_SNP [dm3] 2L_1745855_SNP [dm6]	C	T	5.027e^-5	0.879	SYNONYMOUS_CODING CG17646
2L	11881357	2L_11881357_SNP [dm3] 2L_11881357_SNP [dm6]	C	T	5.033e^-5	0.879	INTRON Pde1c	TF binding site mE1_TFBS_inv
3R	13443392	3R_13443392_SNP [dm3] 3R_17617670_SNP [dm6]	C	A	5.046e^-5	0.879	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	18575219	2R_18575219_SNP [dm3] 2R_22687714_SNP [dm6]	A	G	5.089e^-5	0.879	SYNONYMOUS_CODING ppa	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15281151	X_15281151_SNP [dm3] X_15387118_SNP [dm6]	T	C	5.109e^-5	0.879	UTR_3_PRIME Cngl
2L	11528876	2L_11528876_SNP [dm3] 2L_11528876_SNP [dm6]	A	G	5.183e^-5	0.879	UPSTREAM CG31705 DOWNSTREAM CG31706 INTERGENIC
X	9589558	X_9589558_DEL [dm3] X_9695525_DEL [dm6]	TA	T	5.194e^-5	0.879	INTRON btd	TF binding site BDTNP1_TFBS_dl
2L	15303441	2L_15303441_SNP [dm3] 2L_15303441_SNP [dm6]	C	T	5.226e^-5	0.879	INTERGENIC
3L	7024371	3L_7024371_SNP [dm3] 3L_7031271_SNP [dm6]	C	T	5.256e^-5	0.879	INTRON Mp
X	17252673	X_17252673_SNP [dm3] X_17358640_SNP [dm6]	C	A	5.287e^-5	0.879	INTERGENIC
3L	18913506	3L_18913506_DEL [dm3] 3L_18920406_DEL [dm6]	AAAAATAT	A	5.311e^-5	0.879	UPSTREAM CG18223 DOWNSTREAM CG3819 INTERGENIC
3L	12369478	3L_12369478_SNP [dm3] 3L_12376378_SNP [dm6]	T	G	5.373e^-5	0.879	INTRON Ncc69
2L	7582818	2L_7582818_SNP [dm3] 2L_7582818_SNP [dm6]	A	G	5.394e^-5	0.879	NON_SYNONYMOUS_CODING Spn28B
3R	25922807	3R_25922807_SNP [dm3] 3R_30097085_SNP [dm6]	G	C	5.408e^-5	0.879	INTRON sima	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	6930710	3R_6930710_SNP [dm3] 3R_11104988_SNP [dm6]	C	T	5.459e^-5	0.879	INTERGENIC
2L	11882120	2L_11882120_SNP [dm3] 2L_11882120_SNP [dm6]	G	T	5.501e^-5	0.879	INTRON Pde1c
2R	4178767	2R_4178767_SNP [dm3] 2R_8291262_SNP [dm6]	A	T	5.601e^-5	0.879	INTERGENIC
2L	10943655	2L_10943655_SNP [dm3] 2L_10943655_SNP [dm6]	A	T	5.658e^-5	0.879	UPSTREAM CR44492 & 1 other INTRON dpr2
2L	10956638	2L_10956638_SNP [dm3] 2L_10956638_SNP [dm6]	A	G	5.664e^-5	0.879	INTRON dpr2
2L	2424903	2L_2424903_SNP [dm3] 2L_2424903_SNP [dm6]	C	T	5.678e^-5	0.879	SYNONYMOUS_CODING CG44139 DOWNSTREAM CG9886
2L	1239419	2L_1239419_SNP [dm3] 2L_1239419_SNP [dm6]	A	C	5.761e^-5	0.879	UPSTREAM CG5397 INTERGENIC
2L	9855183	2L_9855183_SNP [dm3] 2L_9855183_SNP [dm6]	A	T	5.834e^-5	0.879	INTRON nAChRalpha6
2R	4438449	2R_4438449_SNP [dm3] 2R_8550944_SNP [dm6]	C	A	5.845e^-5	0.879	DOWNSTREAM CG12780 INTERGENIC
2L	11495990	2L_11495990_SNP [dm3] 2L_11495990_SNP [dm6]	A	T	5.860e^-5	0.879	DOWNSTREAM CG6488 INTERGENIC
3R	13443391	3R_13443391_SNP [dm3] 3R_17617669_SNP [dm6]	C	A	5.902e^-5	0.879	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	6930453	3R_6930453_DEL [dm3] 3R_11104731_DEL [dm6]	CC	C	5.915e^-5	0.879	INTERGENIC
3R	12628385	3R_12628385_SNP [dm3] 3R_16802663_SNP [dm6]	T	C	5.972e^-5	0.879	DOWNSTREAM CR45751 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	7047609	3R_7047609_SNP [dm3] 3R_11221887_SNP [dm6]	G	A	5.988e^-5	0.879	UPSTREAM RpL3 & 3 others DOWNSTREAM CR31144 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA
2L	13658949	2L_13658949_SNP [dm3] 2L_13658949_SNP [dm6]	A	T	6.024e^-5	0.879	INTERGENIC
X	13203950	X_13203950_SNP [dm3] X_13309917_SNP [dm6]	T	A	6.139e^-5	0.879	INTRON IP3K2
3L	1083500	3L_1083500_DEL [dm3] 3L_1083500_DEL [dm6]	AA	A	6.142e^-5	0.879	INTRON bab1	TF binding site BDTNP1_TFBS_dl
2L	12504432	2L_12504432_SNP [dm3] 2L_12504432_SNP [dm6]	A	G	6.145e^-5	0.879	UTR_5_PRIME bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3L	13980020	3L_13980020_SNP [dm3] 3L_13986920_SNP [dm6]	C	T	6.208e^-5	0.879	NON_SYNONYMOUS_CODING CG17362 UPSTREAM CG9040 INTRON CG17364
2R	17876730	2R_17876730_SNP [dm3] 2R_21989225_SNP [dm6]	G	A	6.223e^-5	0.879	SYNONYMOUS_CODING CG34370	TF binding site mE1_TFBS_cad
3R	13442957	3R_13442957_SNP [dm3] 3R_17617235_SNP [dm6]	G	A	6.252e^-5	0.879	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_zfh1
3L	16553942	3L_16553942_SNP [dm3] 3L_16560842_SNP [dm6]	C	A	6.327e^-5	0.879	INTERGENIC
2L	17534394	2L_17534394_SNP [dm3] 2L_17534394_SNP [dm6]	G	C	6.426e^-5	0.879	INTERGENIC
X	2896677	X_2896677_SNP [dm3] X_3002644_SNP [dm6]	C	G	6.428e^-5	0.879	INTRON kirre
2L	8492926	2L_8492926_SNP [dm3] 2L_8492926_SNP [dm6]	C	G	6.441e^-5	0.879	INTRON Dh31
X	2234194	X_2234194_SNP [dm3] X_2340161_SNP [dm6]	G	A	6.472e^-5	0.879	UTR_5_PRIME phl UPSTREAM phl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	13442827	3R_13442827_SNP [dm3] 3R_17617105_SNP [dm6]	G	A	6.703e^-5	0.879	UPSTREAM tRNA:V3b:90BC INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	9645260	2R_9645260_SNP [dm3] 2R_13757755_SNP [dm6]	C	A	6.705e^-5	0.879	NON_SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_sens
3R	8241764	3R_8241764_SNP [dm3] 3R_12416042_SNP [dm6]	T	C	6.743e^-5	0.879	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_sens
2R	17788613	2R_17788613_SNP [dm3] 2R_21901108_SNP [dm6]	G	T	6.744e^-5	0.879	INTRON Fili	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16618963	2R_16618963_SNP [dm3] 2R_20731458_SNP [dm6]	A	C	6.788e^-5	0.879	UPSTREAM CG13442 INTRON dpr
3R	5376183	3R_5376183_SNP [dm3] 3R_9550461_SNP [dm6]	G	T	6.838e^-5	0.879	INTRON mura & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	10112993	3R_10112993_SNP [dm3] 3R_14287271_SNP [dm6]	A	C	6.905e^-5	0.879	UPSTREAM trx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12867573	3L_12867573_SNP [dm3] 3L_12874473_SNP [dm6]	C	A	6.990e^-5	0.879	INTERGENIC
3R	13442897	3R_13442897_SNP [dm3] 3R_17617175_SNP [dm6]	A	G	7.072e^-5	0.879	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_zfh1
3R	12407309	3R_12407309_SNP [dm3] 3R_16581587_SNP [dm6]	G	C	7.083e^-5	0.879	INTRON Scp2
X	21094842	X_21094842_SNP [dm3] X_21223815_SNP [dm6]	G	C	7.125e^-5	0.879	INTRON CG32521	TF binding site mE1_TFBS_inv
2L	9810293	2L_9810293_SNP [dm3] 2L_9810293_SNP [dm6]	A	G	7.182e^-5	0.879	INTRON nAChRalpha6
3L	4251343	3L_4251343_SNP [dm3] 3L_4251343_SNP [dm6]	C	T	7.310e^-5	0.879	SYNONYMOUS_CODING ago	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	4823309	3R_4823309_SNP [dm3] 3R_8997587_SNP [dm6]	G	T	7.338e^-5	0.879	UPSTREAM CG11977 INTRON CG31100
X	7903792	X_7903792_SNP [dm3] X_8009759_SNP [dm6]	G	A	7.362e^-5	0.879	INTRON Tbh
X	7903822	X_7903822_SNP [dm3] X_8009789_SNP [dm6]	T	A	7.377e^-5	0.879	INTRON Tbh
3L	1400389	3L_1400389_SNP [dm3] 3L_1400389_SNP [dm6]	A	G	7.415e^-5	0.879	SPLICE_SITE_REGION CG32320 INTRON Ptp61F & 1 other
3R	13443337	3R_13443337_SNP [dm3] 3R_17617615_SNP [dm6]	G	C	7.419e^-5	0.879	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	14203755	3L_14203755_SNP [dm3] 3L_14210655_SNP [dm6]	C	A	7.478e^-5	0.879	INTRON nuf
2L	16185023	2L_16185023_SNP [dm3] 2L_16185023_SNP [dm6]	C	T	7.589e^-5	0.879	SYNONYMOUS_CODING Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9139678	3L_9139678_SNP [dm3] 3L_9146578_SNP [dm6]	G	A	7.648e^-5	0.879	UTR_3_PRIME Rdl DOWNSTREAM nwk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15960090	3R_15960090_SNP [dm3] 3R_20134368_SNP [dm6]	G	A	7.652e^-5	0.879	INTERGENIC
3R	15960217	3R_15960217_SNP [dm3] 3R_20134495_SNP [dm6]	C	G	7.652e^-5	0.879	INTERGENIC
3R	15960682	3R_15960682_SNP [dm3] 3R_20134960_SNP [dm6]	G	A	7.652e^-5	0.879	INTERGENIC
X	9584618	X_9584618_SNP [dm3] X_9690585_SNP [dm6]	C	T	7.742e^-5	0.879	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	4499503	2L_4499503_SNP [dm3] 2L_4499503_SNP [dm6]	G	A	7.745e^-5	0.879	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	7903376	X_7903376_SNP [dm3] X_8009343_SNP [dm6]	C	T	7.792e^-5	0.879	INTRON Tbh
X	7903357	X_7903357_SNP [dm3] X_8009324_SNP [dm6]	C	A	7.947e^-5	0.879	INTRON Tbh
2L	8492891	2L_8492891_SNP [dm3] 2L_8492891_SNP [dm6]	G	A	8.059e^-5	0.879	INTRON Dh31
2R	16730343	2R_16730343_SNP [dm3] 2R_20842838_SNP [dm6]	A	G	8.095e^-5	0.879	INTERGENIC
2R	17452494	2R_17452494_SNP [dm3] 2R_21564989_SNP [dm6]	G	A	8.246e^-5	0.879	INTRON CG10440
X	12344474	X_12344474_SNP [dm3] X_12450441_SNP [dm6]	A	G	8.257e^-5	0.879	INTRON Pkcdelta
3R	7047404	3R_7047404_DEL [dm3] 3R_11221682_DEL [dm6]	CACAAC	C	8.303e^-5	0.879	UPSTREAM RpL3 & 2 others DOWNSTREAM CR31144 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA
2L	13188975	2L_13188975_SNP [dm3] 2L_13188975_SNP [dm6]	C	T	8.307e^-5	0.879	NON_SYNONYMOUS_CODING CG16974	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7047974	3R_7047974_SNP [dm3] 3R_11222252_SNP [dm6]	T	C	8.338e^-5	0.879	SYNONYMOUS_CODING RpL3 UPSTREAM snoRNA:Me18S-C1096 & 2 others DOWNSTREAM CR31144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	25930990	3R_25930990_SNP [dm3] 3R_30105268_SNP [dm6]	G	A	8.465e^-5	0.879	INTRON sima
2R	17452581	2R_17452581_DEL [dm3] 2R_21565076_DEL [dm6]	TT	T	8.509e^-5	0.879	INTRON CG10440
2L	11495994	2L_11495994_SNP [dm3] 2L_11495994_SNP [dm6]	A	G	8.596e^-5	0.879	DOWNSTREAM CG6488 INTERGENIC
X	7903919	X_7903919_SNP [dm3] X_8009886_SNP [dm6]	G	A	8.640e^-5	0.879	INTRON Tbh
3R	785548	3R_785548_SNP [dm3] 3R_4959826_SNP [dm6]	C	A	8.955e^-5	0.879	INTRON CG2016	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1747308	2L_1747308_SNP [dm3] 2L_1747308_SNP [dm6]	G	T	9.008e^-5	0.879	INTRON CG17646
2L	11198388	2L_11198388_SNP [dm3] 2L_11198388_SNP [dm6]	C	T	9.064e^-5	0.879	INTRON Ca-beta
3R	10955290	3R_10955290_SNP [dm3] 3R_15129568_SNP [dm6]	C	T	9.089e^-5	0.879	INTRON CG42788
2L	2419753	2L_2419753_SNP [dm3] 2L_2419753_SNP [dm6]	A	G	9.163e^-5	0.879	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
3R	4327893	3R_4327893_SNP [dm3] 3R_8502171_SNP [dm6]	C	T	9.231e^-5	0.879	INTERGENIC
3R	11424928	3R_11424928_SNP [dm3] 3R_15599206_SNP [dm6]	A	C	9.233e^-5	0.879	INTERGENIC
2R	16775849	2R_16775849_SNP [dm3] 2R_20888344_SNP [dm6]	A	G	9.318e^-5	0.879	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	6748052	2R_6748052_SNP [dm3] 2R_10860547_SNP [dm6]	G	C	9.363e^-5	0.879	DOWNSTREAM CR44302 INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13443201	3R_13443201_DEL [dm3] 3R_17617479_DEL [dm6]	AC	A	9.373e^-5	0.879	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	11314076	3L_11314076_SNP [dm3] 3L_11320976_SNP [dm6]	T	G	9.418e^-5	0.879	SYNONYMOUS_CODING CG6168
2L	696806	2L_696806_SNP [dm3] 2L_696806_SNP [dm6]	G	C	9.423e^-5	0.879	INTRON ds	TF binding site mE1_TFBS_Trl
3R	12406762	3R_12406762_SNP [dm3] 3R_16581040_SNP [dm6]	T	C	9.470e^-5	0.879	INTRON Scp2
X	17248087	X_17248087_SNP [dm3] X_17354054_SNP [dm6]	T	C	9.473e^-5	0.879	INTERGENIC
2L	14286237	2L_14286237_SNP [dm3] 2L_14286237_SNP [dm6]	G	T	9.702e^-5	0.879	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_chinmo
3L	16171462	3L_16171462_SNP [dm3] 3L_16178362_SNP [dm6]	A	G	9.820e^-5	0.879	UPSTREAM CR45755 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14892907	2L_14892907_SNP [dm3] 2L_14892907_SNP [dm6]	G	T	9.839e^-5	0.879	INTERGENIC
X	15450923	X_15450923_SNP [dm3] X_15556890_SNP [dm6]	A	G	9.968e^-5	0.879	UPSTREAM CG42300 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	4398671	2R_4398671_SNP [dm3] 2R_8511166_SNP [dm6]	T	C	1.002e^-4	0.879	INTRON mtt
X	4793974	X_4793974_SNP [dm3] X_4899941_SNP [dm6]	C	T	1.008e^-4	0.879	INTRON CG42594
3R	4823841	3R_4823841_SNP [dm3] 3R_8998119_SNP [dm6]	C	T	1.016e^-4	0.879	SYNONYMOUS_CODING CG11977 INTRON CG31100
X	9585081	X_9585081_SNP [dm3] X_9691048_SNP [dm6]	T	A	1.016e^-4	0.879	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25934707	3R_25934707_DEL [dm3] 3R_30108985_DEL [dm6]	ATTTA	A	1.018e^-4	0.879	INTRON sima	TF binding site mE1_TFBS_cad
3L	2956985	3L_2956985_SNP [dm3] 3L_2956985_SNP [dm6]	C	T	1.021e^-4	0.879	INTRON Shab
2L	12360701	2L_12360701_SNP [dm3] 2L_12360701_SNP [dm6]	C	T	1.027e^-4	0.879	INTRON bru-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13392303	3R_13392303_DEL [dm3] 3R_17566581_DEL [dm6]	TCGGCCAAGCT...	T	1.029e^-4	0.879	INTRON Hmx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	18858881	3R_18858881_INS [dm3] 3R_23033159_INS [dm6]	G	GAAGCTGGTGAG...	1.042e^-4	0.879	DOWNSTREAM CG13833 INTERGENIC
X	7816116	X_7816116_SNP [dm3] X_7922083_SNP [dm6]	G	A	1.053e^-4	0.879	DOWNSTREAM CG10777 & 1 other INTERGENIC
2L	10656745	2L_10656745_SNP [dm3] 2L_10656745_SNP [dm6]	C	T	1.054e^-4	0.879	UPSTREAM CR45692 INTERGENIC
3L	14206001	3L_14206001_SNP [dm3] 3L_14212901_SNP [dm6]	A	G	1.055e^-4	0.879	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	2424906	2L_2424906_SNP [dm3] 2L_2424906_SNP [dm6]	A	T	1.062e^-4	0.879	SYNONYMOUS_CODING CG44139 DOWNSTREAM CG9886
X	11201076	X_11201076_SNP [dm3] X_11307043_SNP [dm6]	T	C	1.062e^-4	0.879	INTERGENIC
2L	3178302	2L_3178302_SNP [dm3] 2L_3178302_SNP [dm6]	G	A	1.066e^-4	0.879	INTRON CG34393	TF binding site mE1_TFBS_sens
X	17252360	X_17252360_DEL [dm3] X_17358327_DEL [dm6]	GCTGCGATGG	G	1.086e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_Trl
X	17116949	X_17116949_SNP [dm3] X_17222916_SNP [dm6]	A	T	1.090e^-4	0.879	DOWNSTREAM CG34327 & 1 other INTERGENIC
X	22336751	X_22336751_SNP [dm3] X_22934915_SNP [dm6]	T	G	1.095e^-4	0.879	INTERGENIC
3L	12616606	3L_12616606_SNP [dm3] 3L_12623506_SNP [dm6]	C	A	1.098e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	7166307	X_7166307_SNP [dm3] X_7272274_SNP [dm6]	T	C	1.104e^-4	0.879	INTRON CR44357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
X	9589889	X_9589889_SNP [dm3] X_9695856_SNP [dm6]	T	C	1.113e^-4	0.879	SYNONYMOUS_CODING btd	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	7047759	3R_7047759_SNP [dm3] 3R_11222037_SNP [dm6]	A	T	1.118e^-4	0.879	UPSTREAM snoRNA:Me18S-C1096 & 2 others DOWNSTREAM CR31144 INTRON RpL3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	9526622	2R_9526622_SNP [dm3] 2R_13639117_SNP [dm6]	A	C	1.122e^-4	0.879	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11815557	2R_11815557_SNP [dm3] 2R_15928052_SNP [dm6]	T	G	1.122e^-4	0.879	UTR_5_PRIME bdg INTRON bdg
2L	8013414	2L_8013414_SNP [dm3] 2L_8013414_SNP [dm6]	T	C	1.130e^-4	0.879	INTRON Tg
X	22213159	X_22213159_SNP [dm3] X_22811323_SNP [dm6]	A	G	1.132e^-4	0.879	SYNONYMOUS_CODING CG12446	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	20874152	X_20874152_INS [dm3] X_21003125_INS [dm6]	T	TT	1.135e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11702444	3L_11702444_SNP [dm3] 3L_11709344_SNP [dm6]	C	G	1.138e^-4	0.879	SYNONYMOUS_CODING Ccdc56 UTR_5_PRIME mtTFB1 UPSTREAM CG11658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13441992	3R_13441992_SNP [dm3] 3R_17616270_SNP [dm6]	C	A	1.141e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	4630663	3L_4630663_SNP [dm3] 3L_4630663_SNP [dm6]	T	G	1.144e^-4	0.879	INTRON axo
3R	14534645	3R_14534645_INS [dm3] 3R_18708923_INS [dm6]	A	AT	1.146e^-4	0.879	INTRON VAChT & 1 other
2L	11744315	2L_11744315_SNP [dm3] 2L_11744315_SNP [dm6]	T	C	1.147e^-4	0.879	UTR_3_PRIME Vha100-5 DOWNSTREAM Vha100-5 EXON CR44144
3R	22952376	3R_22952376_SNP [dm3] 3R_27126654_SNP [dm6]	G	T	1.153e^-4	0.879	INTRON CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15504374	2R_15504374_SNP [dm3] 2R_19616869_SNP [dm6]	A	T	1.155e^-4	0.879	INTRON sm
2R	10005281	2R_10005281_SNP [dm3] 2R_14117776_SNP [dm6]	G	C	1.161e^-4	0.879	INTRON Prosap
3R	23163549	3R_23163549_INS [dm3] 3R_27337827_INS [dm6]	A	ATA	1.163e^-4	0.879	INTERGENIC
3R	9710925	3R_9710925_SNP [dm3] 3R_13885203_SNP [dm6]	A	G	1.164e^-4	0.879	INTERGENIC
2R	15799277	2R_15799277_SNP [dm3] 2R_19911772_SNP [dm6]	T	C	1.182e^-4	0.879	UPSTREAM CR44573 INTERGENIC
3L	18696682	3L_18696682_SNP [dm3] 3L_18703582_SNP [dm6]	G	T	1.187e^-4	0.879	INTERGENIC
2R	19368944	2R_19368944_SNP [dm3] 2R_23481421_SNP [dm6]	C	T	1.189e^-4	0.879	INTRON CG43795
X	4793948	X_4793948_SNP [dm3] X_4899915_SNP [dm6]	G	A	1.189e^-4	0.879	INTRON CG42594
2L	4936358	2L_4936358_SNP [dm3] 2L_4936358_SNP [dm6]	G	A	1.192e^-4	0.879	START_GAINED hoe2 UTR_5_PRIME hoe2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14203876	3L_14203876_INS [dm3] 3L_14210776_INS [dm6]	T	TT	1.199e^-4	0.879	INTRON nuf
3R	14794692	3R_14794692_SNP [dm3] 3R_18968970_SNP [dm6]	G	T	1.203e^-4	0.879	INTRON CG42613 & 1 other
2L	11881427	2L_11881427_SNP [dm3] 2L_11881427_SNP [dm6]	A	G	1.207e^-4	0.879	INTRON Pde1c	TF binding site mE1_TFBS_inv
2L	487123	2L_487123_SNP [dm3] 2L_487123_SNP [dm6]	C	T	1.217e^-4	0.879	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	2797817	2L_2797817_INS [dm3] 2L_2797817_INS [dm6]	C	CT	1.218e^-4	0.879	UPSTREAM CR43821 INTRON Syt1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	9855203	2L_9855203_SNP [dm3] 2L_9855203_SNP [dm6]	T	G	1.222e^-4	0.879	INTRON nAChRalpha6
3R	24476268	3R_24476268_SNP [dm3] 3R_28650546_SNP [dm6]	G	A	1.227e^-4	0.879	UPSTREAM CG31050 INTERGENIC
2L	6793565	2L_6793565_SNP [dm3] 2L_6793565_SNP [dm6]	G	A	1.229e^-4	0.879	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	14205826	3L_14205826_DEL [dm3] 3L_14212726_DEL [dm6]	TTTTGTCTTTTGGCATTGTT...	T	1.231e^-4	0.879	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2L	11747315	2L_11747315_SNP [dm3] 2L_11747315_SNP [dm6]	A	G	1.233e^-4	0.879	INTERGENIC
2L	2419710	2L_2419710_DEL [dm3] 2L_2419710_DEL [dm6]	TG	A	1.234e^-4	0.879	INTRON CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11833777	2R_11833777_SNP [dm3] 2R_15946272_SNP [dm6]	C	T	1.235e^-4	0.879	SYNONYMOUS_CODING Cyp4aa1 DOWNSTREAM mir-4919 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4823314	3R_4823314_SNP [dm3] 3R_8997592_SNP [dm6]	T	A	1.257e^-4	0.879	UPSTREAM CG11977 INTRON CG31100
2L	3861576	2L_3861576_SNP [dm3] 2L_3861576_SNP [dm6]	C	T	1.272e^-4	0.879	INTRON CR44078	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	9629187	2R_9629187_SNP [dm3] 2R_13741682_SNP [dm6]	G	A	1.284e^-4	0.879	INTRON fas
3R	10433683	3R_10433683_SNP [dm3] 3R_14607961_SNP [dm6]	C	G	1.289e^-4	0.879	UTR_3_PRIME stumps
X	2662880	X_2662880_SNP [dm3] X_2768847_SNP [dm6]	T	A	1.294e^-4	0.879	INTRON kirre
X	22209741	X_22209741_INS [dm3] X_22807905_INS [dm6]	G	GCTCCCGAA	1.294e^-4	0.879	UPSTREAM CR45464 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9817670	3L_9817670_SNP [dm3] 3L_9824570_SNP [dm6]	G	A	1.294e^-4	0.879	SYNONYMOUS_CODING CG43897 UPSTREAM Ilp5
2L	918236	2L_918236_SNP [dm3] 2L_918236_SNP [dm6]	T	A	1.305e^-4	0.879	DOWNSTREAM GluRIIC INTERGENIC	TF binding site mE1_TFBS_cad
3R	9550751	3R_9550751_SNP [dm3] 3R_13725029_SNP [dm6]	T	A	1.308e^-4	0.879	INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2R	18760753	2R_18760753_SNP [dm3] 2R_22873230_SNP [dm6]	C	T	1.309e^-4	0.879	INTRON CG13532	TF binding site mE1_TFBS_chinmo
2R	9526621	2R_9526621_SNP [dm3] 2R_13639116_SNP [dm6]	C	A	1.317e^-4	0.879	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10607925	2L_10607925_SNP [dm3] 2L_10607925_SNP [dm6]	A	C	1.318e^-4	0.879	INTRON Trim9	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13258558	2L_13258558_SNP [dm3] 2L_13258558_SNP [dm6]	G	T	1.319e^-4	0.879	UTR_3_PRIME CG31851 DOWNSTREAM CG31730 & 1 other
2R	11815752	2R_11815752_SNP [dm3] 2R_15928247_SNP [dm6]	G	A	1.325e^-4	0.879	UTR_5_PRIME bdg INTRON bdg
X	6252878	X_6252878_SNP [dm3] X_6358845_SNP [dm6]	G	C	1.330e^-4	0.879	INTRON kdn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10686192	2R_10686192_DEL [dm3] 2R_14798687_DEL [dm6]	TT	T	1.333e^-4	0.879	UTR_5_PRIME kn INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	20271154	2R_20271154_SNP [dm3] 2R_24383631_SNP [dm6]	A	G	1.336e^-4	0.879	INTRON mAChR-A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6901210	3R_6901210_SNP [dm3] 3R_11075488_SNP [dm6]	T	C	1.341e^-4	0.879	INTERGENIC
2R	18932205	2R_18932205_SNP [dm3] 2R_23044682_SNP [dm6]	T	A	1.348e^-4	0.879	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	16843949	2R_16843949_SNP [dm3] 2R_20956444_SNP [dm6]	C	T	1.349e^-4	0.879	INTRON hbn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1083512	3L_1083512_SNP [dm3] 3L_1083512_SNP [dm6]	T	C	1.352e^-4	0.879	INTRON bab1	TF binding site BDTNP1_TFBS_dl
3R	12725223	3R_12725223_SNP [dm3] 3R_16899501_SNP [dm6]	C	A	1.358e^-4	0.879	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	7693651	X_7693651_SNP [dm3] X_7799618_SNP [dm6]	G	A	1.361e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13241894	3L_13241894_SNP [dm3] 3L_13248794_SNP [dm6]	A	G	1.364e^-4	0.879	UPSTREAM tRNA:D2:69F & 1 other INTRON caps
2L	14735067	2L_14735067_SNP [dm3] 2L_14735067_SNP [dm6]	T	A	1.368e^-4	0.879	UPSTREAM CG31835 INTERGENIC
3L	17688240	3L_17688240_SNP [dm3] 3L_17695140_SNP [dm6]	G	T	1.369e^-4	0.879	INTRON Ccn
3L	4496607	3L_4496607_INS [dm3] 3L_4496607_INS [dm6]	G	GGGTA	1.389e^-4	0.879	DOWNSTREAM CG13721 INTERGENIC
3R	9728125	3R_9728125_SNP [dm3] 3R_13902403_SNP [dm6]	C	T	1.392e^-4	0.879	SYNONYMOUS_CODING ems	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9726547	3R_9726547_SNP [dm3] 3R_13900825_SNP [dm6]	A	T	1.395e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13442868	3R_13442868_SNP [dm3] 3R_17617146_SNP [dm6]	G	T	1.395e^-4	0.879	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	18762108	2R_18762108_SNP [dm3] 2R_22874585_SNP [dm6]	C	T	1.396e^-4	0.879	UPSTREAM PIP5K59B DOWNSTREAM CG13532 EXON CR45469	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14985501	2R_14985501_SNP [dm3] 2R_19097996_SNP [dm6]	C	T	1.399e^-4	0.879	INTRON 5-HT1A
2R	17452575	2R_17452575_SNP [dm3] 2R_21565070_SNP [dm6]	C	T	1.412e^-4	0.879	INTRON CG10440
3L	670528	3L_670528_SNP [dm3] 3L_670528_SNP [dm6]	C	T	1.419e^-4	0.879	INTERGENIC
3R	1319424	3R_1319424_SNP [dm3] 3R_5493702_SNP [dm6]	G	C	1.425e^-4	0.879	INTRON CG31547	TF binding site mE1_TFBS_cad
2R	18760759	2R_18760759_SNP [dm3] 2R_22873236_SNP [dm6]	A	T	1.434e^-4	0.879	INTRON CG13532	TF binding site mE1_TFBS_chinmo
2R	1385699	2R_1385699_SNP [dm3] 2R_5498194_SNP [dm6]	A	C	1.437e^-4	0.879	INTRON CG30438	transposable element FlyBase
2L	922191	2L_922191_SNP [dm3] 2L_922191_SNP [dm6]	A	T	1.438e^-4	0.879	UPSTREAM CG4341 INTERGENIC
2R	12363734	2R_12363734_SNP [dm3] 2R_16476229_SNP [dm6]	C	T	1.439e^-4	0.879	INTERGENIC
2R	3432158	2R_3432158_SNP [dm3] 2R_7544653_SNP [dm6]	C	A	1.441e^-4	0.879	UPSTREAM Corin INTRON Corin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13129556	3L_13129556_SNP [dm3] 3L_13136456_SNP [dm6]	C	A	1.455e^-4	0.879	SPLICE_SITE_REGION CG33262 INTRON CG33262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1905193	2L_1905193_SNP [dm3] 2L_1905193_SNP [dm6]	C	T	1.461e^-4	0.879	INTRON CG7337
3L	8853169	3L_8853169_SNP [dm3] 3L_8860069_SNP [dm6]	C	T	1.465e^-4	0.879	INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	14772931	3L_14772931_SNP [dm3] 3L_14779831_SNP [dm6]	C	A	1.467e^-4	0.879	INTRON bmm
3R	9728038	3R_9728038_SNP [dm3] 3R_13902316_SNP [dm6]	T	G	1.478e^-4	0.879	NON_SYNONYMOUS_CODING ems	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12517262	3R_12517262_SNP [dm3] 3R_16691540_SNP [dm6]	A	G	1.481e^-4	0.879	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22829198	3R_22829198_SNP [dm3] 3R_27003476_SNP [dm6]	A	G	1.488e^-4	0.879	SYNONYMOUS_CODING CG6296 DOWNSTREAM CG31077 INTRON RYa-R
2L	2424603	2L_2424603_SNP [dm3] 2L_2424603_SNP [dm6]	G	A	1.490e^-4	0.879	UTR_3_PRIME CG9886 UPSTREAM CG44139
X	2662858	X_2662858_SNP [dm3] X_2768825_SNP [dm6]	G	A	1.491e^-4	0.879	INTRON kirre
3R	9340624	3R_9340624_SNP [dm3] 3R_13514902_SNP [dm6]	A	T	1.492e^-4	0.879	INTERGENIC
2L	4278907	2L_4278907_SNP [dm3] 2L_4278907_SNP [dm6]	A	G	1.500e^-4	0.879	NON_SYNONYMOUS_CODING Art2	TF binding site BDTNP1_TFBS_dl
X	10018304	X_10018304_SNP [dm3] X_10124271_SNP [dm6]	G	T	1.504e^-4	0.879	UPSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
3R	13442768	3R_13442768_SNP [dm3] 3R_17617046_SNP [dm6]	A	G	1.505e^-4	0.879	UPSTREAM tRNA:V3b:90BC INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	13442769	3R_13442769_SNP [dm3] 3R_17617047_SNP [dm6]	A	C	1.505e^-4	0.879	UPSTREAM tRNA:V3b:90BC INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	13442771	3R_13442771_SNP [dm3] 3R_17617049_SNP [dm6]	T	C	1.505e^-4	0.879	UPSTREAM tRNA:V3b:90BC INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	12388894	X_12388894_SNP [dm3] X_12494861_SNP [dm6]	C	T	1.513e^-4	0.879	SYNONYMOUS_CODING Mks1
2R	20270355	2R_20270355_SNP [dm3] 2R_24382832_SNP [dm6]	T	C	1.518e^-4	0.879	INTRON mAChR-A
2R	20270560	2R_20270560_SNP [dm3] 2R_24383037_SNP [dm6]	C	T	1.518e^-4	0.879	INTRON mAChR-A	TF binding site mE1_TFBS_chinmo
3R	6927359	3R_6927359_SNP [dm3] 3R_11101637_SNP [dm6]	C	T	1.522e^-4	0.879	EXON CR45579
3R	9312106	3R_9312106_SNP [dm3] 3R_13486384_SNP [dm6]	A	G	1.527e^-4	0.879	INTERGENIC
2L	13082901	2L_13082901_SNP [dm3] 2L_13082901_SNP [dm6]	T	A	1.528e^-4	0.879	INTERGENIC
3L	7173320	3L_7173320_SNP [dm3] 3L_7180220_SNP [dm6]	G	A	1.531e^-4	0.879	SYNONYMOUS_CODING Dscam2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12534212	2L_12534212_SNP [dm3] 2L_12534212_SNP [dm6]	A	G	1.537e^-4	0.879	INTRON bun
3R	9932392	3R_9932392_SNP [dm3] 3R_14106670_SNP [dm6]	C	T	1.543e^-4	0.879	NON_SYNONYMOUS_CODING CG12402	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13198724	2L_13198724_SNP [dm3] 2L_13198724_SNP [dm6]	G	T	1.543e^-4	0.879	SYNONYMOUS_CODING CG16972	TF binding site mE1_TFBS_cad
3R	25933266	3R_25933266_SNP [dm3] 3R_30107544_SNP [dm6]	A	T	1.547e^-4	0.879	INTRON sima
3L	12705243	3L_12705243_SNP [dm3] 3L_12712143_SNP [dm6]	A	T	1.552e^-4	0.879	INTERGENIC
2L	3528760	2L_3528760_SNP [dm3] 2L_3528760_SNP [dm6]	A	G	1.557e^-4	0.879	INTRON Spindly
3R	13481273	3R_13481273_SNP [dm3] 3R_17655551_SNP [dm6]	A	G	1.578e^-4	0.879	INTRON CG14322	TF binding site BDTNP1_TFBS_dl
2L	14372480	2L_14372480_SNP [dm3] 2L_14372480_SNP [dm6]	C	T	1.582e^-4	0.879	INTERGENIC
3R	10955682	3R_10955682_SNP [dm3] 3R_15129960_SNP [dm6]	G	T	1.585e^-4	0.879	DOWNSTREAM mir-2493 INTRON CG42788
2L	13257856	2L_13257856_SNP [dm3] 2L_13257856_SNP [dm6]	G	A	1.585e^-4	0.879	SYNONYMOUS_CODING CG31851 DOWNSTREAM CG31728
2L	7675045	2L_7675045_SNP [dm3] 2L_7675045_SNP [dm6]	G	A	1.588e^-4	0.879	UTR_5_PRIME Slob INTRON Myo28B1
2L	10257289	2L_10257289_SNP [dm3] 2L_10257289_SNP [dm6]	A	G	1.589e^-4	0.879	INTRON Pten
2R	16962570	2R_16962570_SNP [dm3] 2R_21075065_SNP [dm6]	G	A	1.600e^-4	0.879	UPSTREAM Treh INTRON Treh	TF binding site mE1_TFBS_Trl
2L	13935209	2L_13935209_INS [dm3] 2L_13935209_INS [dm6]	A	AAGT	1.603e^-4	0.879	UPSTREAM CG16885 INTRON Ance-3
2R	9526623	2R_9526623_INS [dm3] 2R_13639118_INS [dm6]	C	CCCCTGTTTTCC...	1.634e^-4	0.879	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22943123	3R_22943123_SNP [dm3] 3R_27117401_SNP [dm6]	A	G	1.634e^-4	0.879	SYNONYMOUS_CODING CG5880 UPSTREAM CG6066	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	7224373	2L_7224373_SNP [dm3] 2L_7224373_SNP [dm6]	C	A	1.635e^-4	0.879	UTR_3_PRIME Ndae1 INTRON Ndae1
3L	5686199	3L_5686199_SNP [dm3] 3L_5693099_SNP [dm6]	T	G	1.646e^-4	0.879	INTRON sif
3L	4496592	3L_4496592_DEL [dm3] 3L_4496592_DEL [dm6]	ACAAATTACGCA...	A	1.650e^-4	0.879	DOWNSTREAM CG13721 INTERGENIC
3L	14205850	3L_14205850_SNP [dm3] 3L_14212750_SNP [dm6]	T	A	1.654e^-4	0.879	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3R	12630554	3R_12630554_SNP [dm3] 3R_16804832_SNP [dm6]	A	G	1.656e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	11312994	X_11312994_SNP [dm3] X_11418961_SNP [dm6]	C	A	1.661e^-4	0.879	INTERGENIC
2R	20294596	2R_20294596_SNP [dm3] 2R_24407073_SNP [dm6]	A	C	1.665e^-4	0.879	SYNONYMOUS_CODING SerT	TF binding site mE1_TFBS_chinmo
3L	14203687	3L_14203687_SNP [dm3] 3L_14210587_SNP [dm6]	T	G	1.667e^-4	0.879	INTRON nuf
3L	16548909	3L_16548909_SNP [dm3] 3L_16555809_SNP [dm6]	T	A	1.667e^-4	0.879	INTERGENIC
2R	17458709	2R_17458709_SNP [dm3] 2R_21571204_SNP [dm6]	A	C	1.673e^-4	0.879	UTR_5_PRIME CG10440 INTRON CG10440	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	676520	2L_676520_SNP [dm3] 2L_676520_SNP [dm6]	C	G	1.673e^-4	0.879	INTRON ds
3R	5376062	3R_5376062_SNP [dm3] 3R_9550340_SNP [dm6]	C	A	1.675e^-4	0.879	INTRON mura & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7397105	2L_7397105_SNP [dm3] 2L_7397105_SNP [dm6]	C	T	1.689e^-4	0.879	INTRON CG5160
2R	15052893	2R_15052893_SNP [dm3] 2R_19165388_SNP [dm6]	A	G	1.692e^-4	0.879	START_GAINED CG10737 UTR_5_PRIME CG10737 INTRON CG10737
X	11312690	X_11312690_SNP [dm3] X_11418657_SNP [dm6]	A	G	1.695e^-4	0.879	INTERGENIC
2R	11834134	2R_11834134_SNP [dm3] 2R_15946629_SNP [dm6]	G	A	1.695e^-4	0.879	SYNONYMOUS_CODING Cyp4aa1 DOWNSTREAM mir-4919 & 1 other
3L	9818381	3L_9818381_SNP [dm3] 3L_9825281_SNP [dm6]	A	C	1.706e^-4	0.879	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	20273724	2R_20273724_SNP [dm3] 2R_24386201_SNP [dm6]	G	T	1.715e^-4	0.879	INTRON mAChR-A
2L	13082899	2L_13082899_SNP [dm3] 2L_13082899_SNP [dm6]	T	A	1.717e^-4	0.879	INTERGENIC
2R	11815579	2R_11815579_DEL [dm3] 2R_15928074_DEL [dm6]	ATTGGCAA	A	1.725e^-4	0.879	UTR_5_PRIME bdg INTRON bdg
2R	10492615	2R_10492615_SNP [dm3] 2R_14605110_SNP [dm6]	G	A	1.727e^-4	0.879	UPSTREAM tra2 DOWNSTREAM CG33469 INTRON CG12868	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	21189528	3L_21189528_SNP [dm3] 3L_21196428_SNP [dm6]	T	C	1.730e^-4	0.879	UPSTREAM CG34261 DOWNSTREAM CG33054 INTRON park	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	15159832	3R_15159832_SNP [dm3] 3R_19334110_SNP [dm6]	T	C	1.732e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16922427	2R_16922427_SNP [dm3] 2R_21034922_SNP [dm6]	C	T	1.736e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	1319421	3R_1319421_DEL [dm3] 3R_5493699_DEL [dm6]	AG	A	1.738e^-4	0.879	INTRON CG31547	TF binding site mE1_TFBS_cad
2R	4398795	2R_4398795_SNP [dm3] 2R_8511290_SNP [dm6]	C	T	1.738e^-4	0.879	INTRON mtt
3R	14802163	3R_14802163_SNP [dm3] 3R_18976441_SNP [dm6]	A	C	1.753e^-4	0.879	UTR_3_PRIME CG43732 & 1 other DOWNSTREAM CG42613
2L	3894069	2L_3894069_SNP [dm3] 2L_3894069_SNP [dm6]	T	C	1.753e^-4	0.879	INTRON capu
3R	15091368	3R_15091368_SNP [dm3] 3R_19265646_SNP [dm6]	T	A	1.754e^-4	0.879	INTERGENIC
2L	12388015	2L_12388015_SNP [dm3] 2L_12388015_SNP [dm6]	T	C	1.761e^-4	0.879	INTRON bru-2
3L	290190	3L_290190_SNP [dm3] 3L_290190_SNP [dm6]	T	C	1.766e^-4	0.879	SYNONYMOUS_CODING RhoGEF3
3R	18468194	3R_18468194_SNP [dm3] 3R_22642472_SNP [dm6]	C	A	1.766e^-4	0.879	INTRON CG45058
3R	7047662	3R_7047662_SNP [dm3] 3R_11221940_SNP [dm6]	T	A	1.771e^-4	0.879	UPSTREAM snoRNA:Me18S-C1096 & 2 others DOWNSTREAM CR31144 INTRON RpL3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA
3R	7047743	3R_7047743_SNP [dm3] 3R_11222021_SNP [dm6]	T	G	1.771e^-4	0.879	UPSTREAM snoRNA:Me18S-C1096 & 2 others DOWNSTREAM CR31144 INTRON RpL3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA
2L	16800564	2L_16800564_SNP [dm3] 2L_16800564_SNP [dm6]	T	A	1.775e^-4	0.879	INTRON Ugt36Bc
2R	4362495	2R_4362495_SNP [dm3] 2R_8474990_SNP [dm6]	G	A	1.776e^-4	0.879	UTR_3_PRIME mtt
X	2401204	X_2401204_SNP [dm3] X_2507171_SNP [dm6]	C	T	1.778e^-4	0.879	INTRON trol
2L	14732462	2L_14732462_SNP [dm3] 2L_14732462_SNP [dm6]	A	C	1.782e^-4	0.879	DOWNSTREAM CR44857 INTERGENIC
2R	18698182	2R_18698182_SNP [dm3] 2R_22810677_SNP [dm6]	T	A	1.782e^-4	0.879	INTRON stl	TF binding site BDTNP1_TFBS_twi
X	6781806	X_6781806_SNP [dm3] X_6887773_SNP [dm6]	A	G	1.785e^-4	0.879	INTERGENIC
X	15816138	X_15816138_SNP [dm3] X_15922105_SNP [dm6]	G	A	1.786e^-4	0.879	NON_SYNONYMOUS_CODING CG8916 UTR_5_PRIME CG8916
3R	25188971	3R_25188971_SNP [dm3] 3R_29363249_SNP [dm6]	G	A	1.787e^-4	0.879	INTERGENIC
2R	19369203	2R_19369203_SNP [dm3] 2R_23481680_SNP [dm6]	C	T	1.788e^-4	0.879	INTRON CG43795
2L	4499506	2L_4499506_SNP [dm3] 2L_4499506_SNP [dm6]	G	A	1.792e^-4	0.879	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	5523789	3L_5523789_SNP [dm3] 3L_5530689_SNP [dm6]	T	C	1.793e^-4	0.879	INTERGENIC
2L	14372544	2L_14372544_SNP [dm3] 2L_14372544_SNP [dm6]	T	C	1.795e^-4	0.879	INTERGENIC
3L	13980029	3L_13980029_SNP [dm3] 3L_13986929_SNP [dm6]	T	C	1.801e^-4	0.879	NON_SYNONYMOUS_CODING CG17362 UPSTREAM CG9040 INTRON CG17364
2L	11400454	2L_11400454_SNP [dm3] 2L_11400454_SNP [dm6]	G	T	1.806e^-4	0.879	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	9587340	X_9587340_SNP [dm3] X_9693307_SNP [dm6]	A	T	1.813e^-4	0.879	UPSTREAM CR44016 & 1 other INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11744317	2L_11744317_DEL [dm3] 2L_11744317_DEL [dm6]	TATGT	C	1.822e^-4	0.879	UTR_3_PRIME Vha100-5 DOWNSTREAM Vha100-5 EXON CR44144
2R	16775859	2R_16775859_SNP [dm3] 2R_20888354_SNP [dm6]	A	C	1.838e^-4	0.879	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	19487745	2R_19487745_SNP [dm3] 2R_23600222_SNP [dm6]	T	G	1.844e^-4	0.879	SYNONYMOUS_CODING CG42559 UTR_5_PRIME CG42560 UPSTREAM CG42560 DOWNSTREAM apt & 2 others
3R	13441996	3R_13441996_SNP [dm3] 3R_17616274_SNP [dm6]	G	A	1.855e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	13477603	2R_13477603_SNP [dm3] 2R_17590098_SNP [dm6]	G	A	1.856e^-4	0.879	SYNONYMOUS_CODING RhoGAP54D UPSTREAM icln	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	20294635	2R_20294635_SNP [dm3] 2R_24407112_SNP [dm6]	T	C	1.868e^-4	0.879	SYNONYMOUS_CODING SerT	TF binding site mE1_TFBS_chinmo
X	3271477	X_3271477_SNP [dm3] X_3377444_SNP [dm6]	G	C	1.878e^-4	0.879	INTRON dm & 1 other
X	2662877	X_2662877_SNP [dm3] X_2768844_SNP [dm6]	A	T	1.880e^-4	0.879	INTRON kirre
X	13506604	X_13506604_SNP [dm3] X_13612571_SNP [dm6]	G	A	1.887e^-4	0.879	NON_SYNONYMOUS_CODING BthD UPSTREAM Ndc80 DOWNSTREAM tth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	15011130	3L_15011130_SNP [dm3] 3L_15018030_SNP [dm6]	G	T	1.888e^-4	0.879	INTRON Sytbeta
X	8152075	X_8152075_SNP [dm3] X_8258042_SNP [dm6]	A	T	1.889e^-4	0.879	INTRON CG1632	TF binding site BDTNP1_TFBS_dl
3L	15786481	3L_15786481_SNP [dm3] 3L_15793381_SNP [dm6]	T	C	1.890e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	19598487	2L_19598487_SNP [dm3] 2L_19598487_SNP [dm6]	T	C	1.899e^-4	0.879	INTRON Lar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19369015	2R_19369015_SNP [dm3] 2R_23481492_SNP [dm6]	G	C	1.901e^-4	0.879	SYNONYMOUS_CODING CG43795
2L	17066102	2L_17066102_SNP [dm3] 2L_17066102_SNP [dm6]	G	A	1.905e^-4	0.879	INTERGENIC
2L	14767355	2L_14767355_SNP [dm3] 2L_14767355_SNP [dm6]	T	A	1.915e^-4	0.879	DOWNSTREAM CG4701 INTERGENIC
X	7746118	X_7746118_SNP [dm3] X_7852085_SNP [dm6]	C	T	1.924e^-4	0.879	DOWNSTREAM CG10920 INTERGENIC
3L	12867574	3L_12867574_SNP [dm3] 3L_12874474_SNP [dm6]	C	T	1.926e^-4	0.879	INTERGENIC
2L	16523501	2L_16523501_SNP [dm3] 2L_16523501_SNP [dm6]	G	T	1.938e^-4	0.879	INTRON CG5953	TF binding site BDTNP1_TFBS_dl
2L	3894065	2L_3894065_SNP [dm3] 2L_3894065_SNP [dm6]	C	T	1.950e^-4	0.879	INTRON capu
2L	16800556	2L_16800556_SNP [dm3] 2L_16800556_SNP [dm6]	T	A	1.970e^-4	0.879	INTRON Ugt36Bc
2L	13389486	2L_13389486_SNP [dm3] 2L_13389486_SNP [dm6]	C	T	1.972e^-4	0.879	SYNONYMOUS_CODING CG7099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16800573	2L_16800573_SNP [dm3] 2L_16800573_SNP [dm6]	A	T	1.977e^-4	0.879	INTRON Ugt36Bc	TF binding site mE1_TFBS_cad
3L	4528027	3L_4528027_SNP [dm3] 3L_4528027_SNP [dm6]	A	T	1.983e^-4	0.879	INTRON Tie
3L	12187728	3L_12187728_SNP [dm3] 3L_12194628_SNP [dm6]	A	C	1.989e^-4	0.879	UPSTREAM thoc6 INTERGENIC
3R	6925780	3R_6925780_SNP [dm3] 3R_11100058_SNP [dm6]	A	T	1.990e^-4	0.879	INTERGENIC
2R	17788317	2R_17788317_SNP [dm3] 2R_21900812_SNP [dm6]	T	G	1.992e^-4	0.879	INTRON Fili	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16622889	2R_16622889_SNP [dm3] 2R_20735384_SNP [dm6]	C	T	1.995e^-4	0.879	INTRON dpr
3L	12773772	3L_12773772_SNP [dm3] 3L_12780672_SNP [dm6]	C	A	2.000e^-4	0.879	NON_SYNONYMOUS_CODING CG10969 UPSTREAM CG17666
3R	3460573	3R_3460573_SNP [dm3] 3R_7634851_SNP [dm6]	T	A	2.004e^-4	0.879	INTRON CG34127
3L	1260221	3L_1260221_SNP [dm3] 3L_1260221_SNP [dm6]	T	A	2.005e^-4	0.879	INTRON CG9134
3R	12726076	3R_12726076_SNP [dm3] 3R_16900354_SNP [dm6]	G	A	2.005e^-4	0.879	UPSTREAM iab-8 INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	9872957	3L_9872957_SNP [dm3] 3L_9879857_SNP [dm6]	C	G	2.017e^-4	0.879	INTRON CG34382
2L	17566914	2L_17566914_SNP [dm3] 2L_17566914_SNP [dm6]	G	C	2.035e^-4	0.879	DOWNSTREAM mir-124 INTERGENIC
3L	8317679	3L_8317679_INS [dm3] 3L_8324579_INS [dm6]	G	GAGTATCTG	2.042e^-4	0.879	INTERGENIC
3L	6983382	3L_6983382_DEL [dm3] 3L_6990282_DEL [dm6]	TT	T	2.047e^-4	0.879	UPSTREAM bin INTERGENIC	TF binding site mE1_TFBS_Trl
2L	17324983	2L_17324983_SNP [dm3] 2L_17324983_SNP [dm6]	G	T	2.053e^-4	0.879	INTERGENIC
3L	5747353	3L_5747353_SNP [dm3] 3L_5754253_SNP [dm6]	T	A	2.055e^-4	0.879	UTR_5_PRIME Ubp64E INTRON Ubp64E	TF binding site mE1_TFBS_sens
2L	14732235	2L_14732235_SNP [dm3] 2L_14732235_SNP [dm6]	G	T	2.057e^-4	0.879	DOWNSTREAM CR44857 INTERGENIC
X	11312693	X_11312693_SNP [dm3] X_11418660_SNP [dm6]	T	A	2.066e^-4	0.879	INTERGENIC
3R	11424849	3R_11424849_DEL [dm3] 3R_15599127_DEL [dm6]	ATCAACATGAAATGAAAAAT...	A	2.088e^-4	0.879	INTERGENIC
2R	6671075	2R_6671075_INS [dm3] 2R_10783570_INS [dm6]	T	TTCA	2.092e^-4	0.879	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site mE1_TFBS_HSA
2L	14732351	2L_14732351_SNP [dm3] 2L_14732351_SNP [dm6]	A	T	2.097e^-4	0.879	DOWNSTREAM CR44857 INTERGENIC
2L	16523457	2L_16523457_SNP [dm3] 2L_16523457_SNP [dm6]	G	A	2.104e^-4	0.879	INTRON CG5953	TF binding site BDTNP1_TFBS_dl
3L	8887281	3L_8887281_SNP [dm3] 3L_8894181_SNP [dm6]	A	C	2.112e^-4	0.879	UTR_3_PRIME Mcm7 DOWNSTREAM TrpA1
2R	1302767	2R_1302767_SNP [dm3] 2R_5415262_SNP [dm6]	G	A	2.116e^-4	0.879	UPSTREAM laccase2 INTRON laccase2	TF binding site mE1_TFBS_kn
3R	6924185	3R_6924185_SNP [dm3] 3R_11098463_SNP [dm6]	T	C	2.120e^-4	0.879	INTERGENIC
3R	6926425	3R_6926425_SNP [dm3] 3R_11100703_SNP [dm6]	G	A	2.122e^-4	0.879	UPSTREAM CR45579 INTERGENIC
2L	6568344	2L_6568344_SNP [dm3] 2L_6568344_SNP [dm6]	A	T	2.122e^-4	0.879	DOWNSTREAM CG11319 INTERGENIC
2L	6344311	2L_6344311_SNP [dm3] 2L_6344311_SNP [dm6]	G	A	2.123e^-4	0.879	INTRON Cpr	TF binding site mE1_TFBS_HSA
2L	13389537	2L_13389537_SNP [dm3] 2L_13389537_SNP [dm6]	C	T	2.126e^-4	0.879	SYNONYMOUS_CODING CG7099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7616819	3L_7616819_SNP [dm3] 3L_7623719_SNP [dm6]	C	A	2.126e^-4	0.879	INTRON CG33275	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	5078311	X_5078311_INS [dm3] X_5184278_INS [dm6]	C	CC	2.128e^-4	0.879	INTRON rg & 1 other
3R	13935386	3R_13935386_SNP [dm3] 3R_18109664_SNP [dm6]	G	A	2.129e^-4	0.879	DOWNSTREAM tRNA:CR31242 & 1 other INTRON sr
2L	6568336	2L_6568336_SNP [dm3] 2L_6568336_SNP [dm6]	T	A	2.129e^-4	0.879	DOWNSTREAM CG11319 INTERGENIC
2R	18710364	2R_18710364_SNP [dm3] 2R_22822841_SNP [dm6]	G	T	2.130e^-4	0.879	DOWNSTREAM CG30271 INTRON CG42284
X	1020985	X_1020985_SNP [dm3] X_1126952_SNP [dm6]	G	T	2.133e^-4	0.879	INTRON CG3655
2L	11198395	2L_11198395_SNP [dm3] 2L_11198395_SNP [dm6]	C	A	2.136e^-4	0.879	INTRON Ca-beta
2R	16868890	2R_16868890_SNP [dm3] 2R_20981385_SNP [dm6]	G	A	2.136e^-4	0.879	SYNONYMOUS_CODING CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17221474	X_17221474_SNP [dm3] X_17327441_SNP [dm6]	T	G	2.136e^-4	0.879	INTERGENIC
3R	18129439	3R_18129439_SNP [dm3] 3R_22303717_SNP [dm6]	T	C	2.145e^-4	0.879	UTR_3_PRIME CG7084
3R	15957415	3R_15957415_SNP [dm3] 3R_20131693_SNP [dm6]	G	A	2.147e^-4	0.879	INTERGENIC
2R	16775846	2R_16775846_SNP [dm3] 2R_20888341_SNP [dm6]	G	A	2.160e^-4	0.879	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	16775779	2R_16775779_SNP [dm3] 2R_20888274_SNP [dm6]	A	G	2.165e^-4	0.879	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	16775769	2R_16775769_SNP [dm3] 2R_20888264_SNP [dm6]	A	G	2.181e^-4	0.879	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	16775776	2R_16775776_SNP [dm3] 2R_20888271_SNP [dm6]	T	G	2.181e^-4	0.879	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	16775802	2R_16775802_SNP [dm3] 2R_20888297_SNP [dm6]	G	C	2.181e^-4	0.879	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	16775803	2R_16775803_SNP [dm3] 2R_20888298_SNP [dm6]	G	A	2.181e^-4	0.879	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	16775804	2R_16775804_INS [dm3] 2R_20888299_INS [dm6]	A	AGAGT	2.181e^-4	0.879	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	16775812	2R_16775812_SNP [dm3] 2R_20888307_SNP [dm6]	A	C	2.181e^-4	0.879	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	16775821	2R_16775821_DEL [dm3] 2R_20888316_DEL [dm6]	AAGA	TCT	2.181e^-4	0.879	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	16775835	2R_16775835_SNP [dm3] 2R_20888330_SNP [dm6]	C	T	2.181e^-4	0.879	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	7321942	2R_7321942_SNP [dm3] 2R_11434437_SNP [dm6]	G	A	2.187e^-4	0.879	INTERGENIC
X	2662864	X_2662864_SNP [dm3] X_2768831_SNP [dm6]	A	G	2.204e^-4	0.879	INTRON kirre
X	11312713	X_11312713_SNP [dm3] X_11418680_SNP [dm6]	C	T	2.205e^-4	0.879	INTERGENIC
X	11312729	X_11312729_SNP [dm3] X_11418696_SNP [dm6]	A	G	2.205e^-4	0.879	INTERGENIC
3R	12428177	3R_12428177_INS [dm3] 3R_16602455_INS [dm6]	T	TTGGTGT	2.205e^-4	0.879	INTRON CG10345
3R	12724999	3R_12724999_SNP [dm3] 3R_16899277_SNP [dm6]	A	G	2.215e^-4	0.879	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4793924	X_4793924_SNP [dm3] X_4899891_SNP [dm6]	C	G	2.218e^-4	0.879	INTRON CG42594
2L	1274641	2L_1274641_SNP [dm3] 2L_1274641_SNP [dm6]	T	A	2.228e^-4	0.879	INTRON robo3
X	19954473	X_19954473_INS [dm3] X_20060440_INS [dm6]	G	GAC	2.228e^-4	0.879	INTRON Dop2R
3R	13442836	3R_13442836_DEL [dm3] 3R_17617114_DEL [dm6]	TTGTAAATTA	T	2.230e^-4	0.879	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	11198363	2L_11198363_SNP [dm3] 2L_11198363_SNP [dm6]	C	T	2.247e^-4	0.879	INTRON Ca-beta
3L	7131741	3L_7131741_SNP [dm3] 3L_7138641_SNP [dm6]	C	T	2.249e^-4	0.879	INTRON melt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2637274	3L_2637274_SNP [dm3] 3L_2637274_SNP [dm6]	G	A	2.249e^-4	0.879	NON_SYNONYMOUS_CODING MEP-1 UTR_3_PRIME CG42245	TF binding site mE1_TFBS_cad
2L	10191573	2L_10191573_DEL [dm3] 2L_10191573_DEL [dm6]	AA	T	2.258e^-4	0.879	UPSTREAM CG31874 INTRON Sur
2R	17414336	2R_17414336_DEL [dm3] 2R_21526831_DEL [dm6]	CGGCC	C	2.260e^-4	0.879	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	17254051	X_17254051_DEL [dm3] X_17360018_DEL [dm6]	CGTC	C	2.262e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6159384	X_6159384_SNP [dm3] X_6265351_SNP [dm6]	C	A	2.263e^-4	0.879	INTRON schlank	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12368255	3L_12368255_SNP [dm3] 3L_12375155_SNP [dm6]	T	A	2.272e^-4	0.879	INTRON Ncc69
3L	10481255	3L_10481255_SNP [dm3] 3L_10488155_SNP [dm6]	A	T	2.277e^-4	0.879	INTRON A2bp1
2R	8132152	2R_8132152_SNP [dm3] 2R_12244647_SNP [dm6]	G	T	2.278e^-4	0.879	NON_SYNONYMOUS_CODING CG43244
X	3261617	X_3261617_SNP [dm3] X_3367584_SNP [dm6]	T	C	2.279e^-4	0.879	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	17249881	X_17249881_SNP [dm3] X_17355848_SNP [dm6]	G	T	2.283e^-4	0.879	INTERGENIC
2L	2425046	2L_2425046_SNP [dm3] 2L_2425046_SNP [dm6]	C	T	2.284e^-4	0.879	DOWNSTREAM CG9886 & 1 other INTERGENIC
3L	1400280	3L_1400280_SNP [dm3] 3L_1400280_SNP [dm6]	G	T	2.287e^-4	0.879	SYNONYMOUS_CODING CG32320 INTRON Ptp61F
3L	1400446	3L_1400446_SNP [dm3] 3L_1400446_SNP [dm6]	G	A	2.287e^-4	0.879	SYNONYMOUS_CODING CG32320 UPSTREAM tRNA:E4:62Ad INTRON Ptp61F
3L	1400452	3L_1400452_SNP [dm3] 3L_1400452_SNP [dm6]	T	C	2.287e^-4	0.879	SYNONYMOUS_CODING CG32320 UPSTREAM tRNA:E4:62Ad INTRON Ptp61F
3L	1401292	3L_1401292_SNP [dm3] 3L_1401292_SNP [dm6]	T	A	2.287e^-4	0.879	NON_SYNONYMOUS_CODING CG32320 UPSTREAM tRNA:E4:62Ad & 1 other INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	14206581	3L_14206581_SNP [dm3] 3L_14213481_SNP [dm6]	T	C	2.289e^-4	0.879	INTRON nuf
2L	17128337	2L_17128337_SNP [dm3] 2L_17128337_SNP [dm6]	A	T	2.297e^-4	0.879	INTERGENIC
X	14153995	X_14153995_SNP [dm3] X_14259962_SNP [dm6]	G	T	2.301e^-4	0.879	INTERGENIC
3L	5472029	3L_5472029_SNP [dm3] 3L_5478929_SNP [dm6]	T	C	2.303e^-4	0.879	UPSTREAM CG4835 INTERGENIC
2R	11347214	2R_11347214_SNP [dm3] 2R_15459709_SNP [dm6]	C	G	2.303e^-4	0.879	INTRON CG43729
3L	1083495	3L_1083495_SNP [dm3] 3L_1083495_SNP [dm6]	T	A	2.315e^-4	0.879	INTRON bab1	TF binding site BDTNP1_TFBS_dl
2R	3430762	2R_3430762_SNP [dm3] 2R_7543257_SNP [dm6]	A	G	2.316e^-4	0.879	INTRON Corin
3L	12369459	3L_12369459_SNP [dm3] 3L_12376359_SNP [dm6]	A	T	2.322e^-4	0.879	INTRON Ncc69
3R	18894446	3R_18894446_SNP [dm3] 3R_23068724_SNP [dm6]	C	A	2.323e^-4	0.879	INTERGENIC
3R	9331793	3R_9331793_SNP [dm3] 3R_13506071_SNP [dm6]	G	A	2.326e^-4	0.879	INTERGENIC
3L	7143725	3L_7143725_SNP [dm3] 3L_7150625_SNP [dm6]	G	A	2.335e^-4	0.879	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25532794	3R_25532794_DEL [dm3] 3R_29707072_DEL [dm6]	AC	A	2.360e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25532797	3R_25532797_SNP [dm3] 3R_29707075_SNP [dm6]	C	A	2.360e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9340451	3R_9340451_INS [dm3] 3R_13514729_INS [dm6]	A	ACATA	2.362e^-4	0.879	INTERGENIC
3R	12406770	3R_12406770_SNP [dm3] 3R_16581048_SNP [dm6]	C	T	2.365e^-4	0.879	INTRON Scp2
2R	1327689	2R_1327689_SNP [dm3] 2R_5440184_SNP [dm6]	T	A	2.371e^-4	0.879	INTRON laccase2
2L	17566544	2L_17566544_SNP [dm3] 2L_17566544_SNP [dm6]	A	T	2.382e^-4	0.879	DOWNSTREAM mir-124 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15011115	3L_15011115_SNP [dm3] 3L_15018015_SNP [dm6]	A	T	2.384e^-4	0.879	INTRON Sytbeta
3L	15011127	3L_15011127_INS [dm3] 3L_15018027_INS [dm6]	T	TGTTATTTATTAT...	2.384e^-4	0.879	INTRON Sytbeta
3L	15011155	3L_15011155_SNP [dm3] 3L_15018055_SNP [dm6]	C	T	2.384e^-4	0.879	INTRON Sytbeta	TF binding site mE1_TFBS_cad
3L	14215448	3L_14215448_SNP [dm3] 3L_14222348_SNP [dm6]	T	C	2.387e^-4	0.879	INTRON nuf
2L	6793571	2L_6793571_SNP [dm3] 2L_6793571_SNP [dm6]	T	C	2.390e^-4	0.879	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	9739838	3R_9739838_SNP [dm3] 3R_13914116_SNP [dm6]	T	A	2.396e^-4	0.879	INTERGENIC
2L	2256621	2L_2256621_SNP [dm3] 2L_2256621_SNP [dm6]	T	C	2.398e^-4	0.879	INTERGENIC
2L	5855060	2L_5855060_SNP [dm3] 2L_5855060_SNP [dm6]	G	A	2.416e^-4	0.879	INTRON TrissinR	TF binding site mE1_TFBS_HSA
2R	10442980	2R_10442980_SNP [dm3] 2R_14555475_SNP [dm6]	A	T	2.423e^-4	0.879	INTRON ttv
3R	20520918	3R_20520918_SNP [dm3] 3R_24695196_SNP [dm6]	A	G	2.424e^-4	0.879	INTRON slo
2R	12455977	2R_12455977_SNP [dm3] 2R_16568472_SNP [dm6]	T	C	2.429e^-4	0.879	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
3R	11973200	3R_11973200_SNP [dm3] 3R_16147478_SNP [dm6]	T	C	2.434e^-4	0.879	UTR_5_PRIME CG5916 UPSTREAM CG5903	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens
2R	12330495	2R_12330495_SNP [dm3] 2R_16442990_SNP [dm6]	G	A	2.435e^-4	0.879	UPSTREAM CG4409 INTERGENIC
X	13506805	X_13506805_SNP [dm3] X_13612772_SNP [dm6]	G	A	2.440e^-4	0.879	UPSTREAM Ndc80 DOWNSTREAM tth INTRON BthD	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9818573	3L_9818573_SNP [dm3] 3L_9825473_SNP [dm6]	G	A	2.444e^-4	0.879	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8675403	3R_8675403_SNP [dm3] 3R_12849681_SNP [dm6]	A	G	2.445e^-4	0.879	UPSTREAM CR45587 DOWNSTREAM CR44234 INTERGENIC
2L	6793559	2L_6793559_SNP [dm3] 2L_6793559_SNP [dm6]	C	T	2.448e^-4	0.879	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6793581	2L_6793581_SNP [dm3] 2L_6793581_SNP [dm6]	A	C	2.448e^-4	0.879	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	7672623	2L_7672623_SNP [dm3] 2L_7672623_SNP [dm6]	C	T	2.449e^-4	0.879	INTRON Slob & 1 other
2R	20270116	2R_20270116_SNP [dm3] 2R_24382593_SNP [dm6]	C	T	2.450e^-4	0.879	INTRON mAChR-A	TF binding site mE1_TFBS_chinmo
3L	7639786	3L_7639786_SNP [dm3] 3L_7646686_SNP [dm6]	A	G	2.454e^-4	0.879	INTERGENIC
3R	10955291	3R_10955291_SNP [dm3] 3R_15129569_SNP [dm6]	A	G	2.459e^-4	0.879	INTRON CG42788
2R	19535317	2R_19535317_SNP [dm3] 2R_23647794_SNP [dm6]	G	A	2.459e^-4	0.879	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	4879836	2R_4879836_SNP [dm3] 2R_8992331_SNP [dm6]	A	T	2.460e^-4	0.879	DOWNSTREAM Np INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	13624709	2L_13624709_SNP [dm3] 2L_13624709_SNP [dm6]	A	T	2.463e^-4	0.879	INTRON kuz
2R	16667721	2R_16667721_SNP [dm3] 2R_20780216_SNP [dm6]	G	A	2.465e^-4	0.879	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC	TF binding site mE1_TFBS_sens
X	17040017	X_17040017_SNP [dm3] X_17145984_SNP [dm6]	G	A	2.489e^-4	0.879	UPSTREAM snoRNA:Psi18S-1854c & 3 others DOWNSTREAM snoRNA:Psi28S-1135d & 3 others INTRON RpS5a EXON snoRNA:Psi18S-1854a
2L	17389956	2L_17389956_SNP [dm3] 2L_17389956_SNP [dm6]	C	A	2.502e^-4	0.879	INTRON CLIP-190
2L	3529843	2L_3529843_SNP [dm3] 2L_3529843_SNP [dm6]	G	A	2.504e^-4	0.879	SYNONYMOUS_CODING Spindly UPSTREAM Che-13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
2L	13972004	2L_13972004_SNP [dm3] 2L_13972004_SNP [dm6]	A	G	2.505e^-4	0.879	UTR_3_PRIME NimB5 DOWNSTREAM He & 1 other
2L	14726241	2L_14726241_SNP [dm3] 2L_14726241_SNP [dm6]	A	G	2.509e^-4	0.879	SYNONYMOUS_CODING CG42685
2L	2419737	2L_2419737_SNP [dm3] 2L_2419737_SNP [dm6]	A	G	2.513e^-4	0.879	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
2L	16757216	2L_16757216_SNP [dm3] 2L_16757216_SNP [dm6]	G	A	2.520e^-4	0.879	SYNONYMOUS_CODING yellow-b DOWNSTREAM ppk17
3L	8853133	3L_8853133_SNP [dm3] 3L_8860033_SNP [dm6]	C	G	2.522e^-4	0.879	INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
X	2662875	X_2662875_SNP [dm3] X_2768842_SNP [dm6]	C	T	2.525e^-4	0.879	INTRON kirre
2L	14733257	2L_14733257_SNP [dm3] 2L_14733257_SNP [dm6]	A	C	2.527e^-4	0.879	UPSTREAM CR44857 INTERGENIC
3L	9916319	3L_9916319_SNP [dm3] 3L_9923219_SNP [dm6]	G	T	2.531e^-4	0.879	INTRON CG34356
2R	20290592	2R_20290592_SNP [dm3] 2R_24403069_SNP [dm6]	T	A	2.551e^-4	0.879	UTR_5_PRIME Rpn8 UPSTREAM slik	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
X	4998804	X_4998804_SNP [dm3] X_5104771_SNP [dm6]	G	T	2.562e^-4	0.879	INTRON rg & 1 other
3R	11244294	3R_11244294_SNP [dm3] 3R_15418572_SNP [dm6]	C	G	2.564e^-4	0.879	UPSTREAM mir-13a & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	11693042	2R_11693042_INS [dm3] 2R_15805537_INS [dm6]	C	CCATAC	2.564e^-4	0.879	INTRON tun & 1 other
2L	11881645	2L_11881645_SNP [dm3] 2L_11881645_SNP [dm6]	T	A	2.566e^-4	0.879	INTRON Pde1c	TF binding site mE1_TFBS_inv
3R	9552684	3R_9552684_SNP [dm3] 3R_13726962_SNP [dm6]	G	A	2.567e^-4	0.879	INTRON CG34383
2R	8132020	2R_8132020_SNP [dm3] 2R_12244515_SNP [dm6]	C	T	2.575e^-4	0.879	NON_SYNONYMOUS_CODING CG43244
3L	18906963	3L_18906963_SNP [dm3] 3L_18913863_SNP [dm6]	T	C	2.578e^-4	0.879	NON_SYNONYMOUS_CODING CG14077
3L	13929248	3L_13929248_SNP [dm3] 3L_13936148_SNP [dm6]	A	G	2.582e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_cad
X	7932104	X_7932104_SNP [dm3] X_8038071_SNP [dm6]	T	C	2.584e^-4	0.879	UTR_3_PRIME fs_1_h UPSTREAM CG2233 DOWNSTREAM fs_1_h
2R	16618967	2R_16618967_SNP [dm3] 2R_20731462_SNP [dm6]	T	G	2.600e^-4	0.879	UPSTREAM CG13442 INTRON dpr
2R	11833565	2R_11833565_SNP [dm3] 2R_15946060_SNP [dm6]	C	T	2.603e^-4	0.879	SYNONYMOUS_CODING Cyp4aa1 DOWNSTREAM mir-4919 & 1 other
3R	21856194	3R_21856194_SNP [dm3] 3R_26030472_SNP [dm6]	T	C	2.619e^-4	0.879	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	4496606	3L_4496606_SNP [dm3] 3L_4496606_SNP [dm6]	C	G	2.620e^-4	0.879	DOWNSTREAM CG13721 INTERGENIC
X	4793951	X_4793951_SNP [dm3] X_4899918_SNP [dm6]	G	A	2.620e^-4	0.879	INTRON CG42594
3L	10146795	3L_10146795_SNP [dm3] 3L_10153695_SNP [dm6]	G	A	2.624e^-4	0.879	SYNONYMOUS_CODING dpr10 DOWNSTREAM CG8072 INTRON dpr10
2L	6698838	2L_6698838_SNP [dm3] 2L_6698838_SNP [dm6]	T	C	2.626e^-4	0.879	INTRON Tsp
2L	17060431	2L_17060431_SNP [dm3] 2L_17060431_SNP [dm6]	C	T	2.637e^-4	0.879	INTERGENIC
X	12110326	X_12110326_DEL [dm3] X_12216293_DEL [dm6]	AAA	A	2.639e^-4	0.879	INTRON Ten-a
3R	25935986	3R_25935986_SNP [dm3] 3R_30110264_SNP [dm6]	A	C	2.656e^-4	0.879	NON_SYNONYMOUS_CODING sima INTRON sima	TF binding site mE1_TFBS_cad
X	9283746	X_9283746_SNP [dm3] X_9389713_SNP [dm6]	G	A	2.658e^-4	0.879	INTRON mgl
2L	9850429	2L_9850429_SNP [dm3] 2L_9850429_SNP [dm6]	C	T	2.660e^-4	0.879	INTRON nAChRalpha6
2L	3529392	2L_3529392_SNP [dm3] 2L_3529392_SNP [dm6]	T	C	2.662e^-4	0.879	SYNONYMOUS_CODING Spindly
2L	8492879	2L_8492879_INS [dm3] 2L_8492879_INS [dm6]	T	TGGT	2.675e^-4	0.879	INTRON Dh31
X	13464129	X_13464129_DEL [dm3] X_13570096_DEL [dm6]	GG	C	2.675e^-4	0.879	INTRON Tango13
3R	17676629	3R_17676629_SNP [dm3] 3R_21850907_SNP [dm6]	G	A	2.684e^-4	0.879	UTR_3_PRIME glec	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	22763324	3R_22763324_SNP [dm3] 3R_26937602_SNP [dm6]	T	C	2.689e^-4	0.879	INTRON sda
3R	14774476	3R_14774476_SNP [dm3] 3R_18948754_SNP [dm6]	G	A	2.693e^-4	0.879	INTRON CG42613
3R	15961615	3R_15961615_SNP [dm3] 3R_20135893_SNP [dm6]	T	A	2.694e^-4	0.879	INTERGENIC
2R	16775852	2R_16775852_SNP [dm3] 2R_20888347_SNP [dm6]	T	C	2.697e^-4	0.879	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	12616476	2L_12616476_SNP [dm3] 2L_12616476_SNP [dm6]	G	A	2.700e^-4	0.879	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	5983263	3R_5983263_SNP [dm3] 3R_10157541_SNP [dm6]	C	T	2.710e^-4	0.879	SYNONYMOUS_CODING Invadolysin	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14082659	X_14082659_SNP [dm3] X_14188626_SNP [dm6]	T	C	2.725e^-4	0.879	UPSTREAM CG11585 DOWNSTREAM CG12481 INTERGENIC
2L	4498096	2L_4498096_SNP [dm3] 2L_4498096_SNP [dm6]	G	A	2.739e^-4	0.879	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18047973	X_18047973_SNP [dm3] X_18153940_SNP [dm6]	T	G	2.759e^-4	0.879	INTERGENIC
X	21093150	X_21093150_DEL [dm3] X_21222123_DEL [dm6]	AATTCATATGATTTTTGGGC...	A	2.770e^-4	0.879	INTRON CG32521
3R	27501941	3R_27501941_SNP [dm3] 3R_31676219_SNP [dm6]	G	T	2.776e^-4	0.879	INTRON CG1815	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11885404	2R_11885404_SNP [dm3] 2R_15997899_SNP [dm6]	C	G	2.776e^-4	0.879	SYNONYMOUS_CODING ATPCL	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6556672	3L_6556672_SNP [dm3] 3L_6563572_SNP [dm6]	A	G	2.776e^-4	0.879	SYNONYMOUS_CODING jv INTRON CG18769	TF binding site mE1_TFBS_cad
X	6245041	X_6245041_SNP [dm3] X_6351008_SNP [dm6]	A	C	2.784e^-4	0.879	UPSTREAM CG3446 INTRON kdn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	6901204	3R_6901204_SNP [dm3] 3R_11075482_SNP [dm6]	A	T	2.786e^-4	0.879	INTERGENIC
2R	10332454	2R_10332454_SNP [dm3] 2R_14444949_SNP [dm6]	T	G	2.790e^-4	0.879	INTRON Oaz
3L	13146722	3L_13146722_SNP [dm3] 3L_13153622_SNP [dm6]	C	A	2.790e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	1156995	2L_1156995_SNP [dm3] 2L_1156995_SNP [dm6]	G	A	2.800e^-4	0.879	UPSTREAM capt INTRON capt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15011149	3L_15011149_SNP [dm3] 3L_15018049_SNP [dm6]	A	C	2.806e^-4	0.879	INTRON Sytbeta	TF binding site mE1_TFBS_cad
3L	17688233	3L_17688233_SNP [dm3] 3L_17695133_SNP [dm6]	C	T	2.817e^-4	0.879	INTRON Ccn
2R	16961775	2R_16961775_SNP [dm3] 2R_21074270_SNP [dm6]	C	T	2.817e^-4	0.879	INTRON Treh
3R	26866715	3R_26866715_SNP [dm3] 3R_31040993_SNP [dm6]	T	C	2.827e^-4	0.879	INTRON CanA1
3L	1600574	3L_1600574_SNP [dm3] 3L_1600574_SNP [dm6]	C	T	2.828e^-4	0.879	UTR_3_PRIME CG13917 DOWNSTREAM CG12104 & 1 other
3L	1260217	3L_1260217_SNP [dm3] 3L_1260217_SNP [dm6]	G	A	2.830e^-4	0.879	INTRON CG9134
2R	1764624	2R_1764624_SNP [dm3] 2R_5877119_SNP [dm6]	C	A	2.830e^-4	0.879	INTERGENIC
3L	10266288	3L_10266288_SNP [dm3] 3L_10273188_SNP [dm6]	G	A	2.833e^-4	0.879	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
3L	7846138	3L_7846138_SNP [dm3] 3L_7853038_SNP [dm6]	C	T	2.852e^-4	0.879	INTRON Pdp1
2R	11833749	2R_11833749_SNP [dm3] 2R_15946244_SNP [dm6]	G	C	2.855e^-4	0.879	NON_SYNONYMOUS_CODING Cyp4aa1 DOWNSTREAM mir-4919 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9962740	3L_9962740_SNP [dm3] 3L_9969640_SNP [dm6]	T	C	2.860e^-4	0.879	INTRON Nc
X	10812553	X_10812553_SNP [dm3] X_10918520_SNP [dm6]	G	A	2.863e^-4	0.879	SPLICE_SITE_REGION CG43901 INTRON CG43901	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
X	19975976	X_19975976_SNP [dm3] X_20081943_SNP [dm6]	G	A	2.865e^-4	0.879	INTERGENIC
2L	6313840	2L_6313840_SNP [dm3] 2L_6313840_SNP [dm6]	C	T	2.867e^-4	0.879	INTRON Ddr
2R	12356010	2R_12356010_SNP [dm3] 2R_16468505_SNP [dm6]	A	G	2.870e^-4	0.879	DOWNSTREAM CheB53a INTRON CheB53b
3R	9336926	3R_9336926_SNP [dm3] 3R_13511204_SNP [dm6]	A	G	2.874e^-4	0.879	INTERGENIC
3L	5932186	3L_5932186_SNP [dm3] 3L_5939086_SNP [dm6]	G	A	2.875e^-4	0.879	INTRON CG33993
3L	5932308	3L_5932308_SNP [dm3] 3L_5939208_SNP [dm6]	C	G	2.875e^-4	0.879	INTRON CG33993
X	8122337	X_8122337_DEL [dm3] X_8228304_DEL [dm6]	ATGAAATTA	A	2.878e^-4	0.879	INTRON sdt	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	12541965	2L_12541965_SNP [dm3] 2L_12541965_SNP [dm6]	G	C	2.897e^-4	0.879	INTRON bun
3R	12421891	3R_12421891_SNP [dm3] 3R_16596169_SNP [dm6]	T	C	2.898e^-4	0.879	SYNONYMOUS_CODING CG14892 DOWNSTREAM CG10345	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	10763167	2L_10763167_SNP [dm3] 2L_10763167_SNP [dm6]	G	A	2.900e^-4	0.879	INTRON CG6495	TF binding site mE1_TFBS_cad
X	9283975	X_9283975_SNP [dm3] X_9389942_SNP [dm6]	A	T	2.901e^-4	0.879	INTRON mgl
X	22040380	X_22040380_SNP [dm3] X_22638544_SNP [dm6]	G	A	2.905e^-4	0.879	INTERGENIC
2R	10857597	2R_10857597_SNP [dm3] 2R_14970092_SNP [dm6]	T	G	2.905e^-4	0.879	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	21297470	X_21297470_SNP [dm3] X_21426443_SNP [dm6]	G	T	2.911e^-4	0.879	INTRON CG42343
3R	12630559	3R_12630559_SNP [dm3] 3R_16804837_SNP [dm6]	G	A	2.914e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	3461377	3R_3461377_SNP [dm3] 3R_7635655_SNP [dm6]	A	G	2.921e^-4	0.879	INTRON CG34127
3L	18284510	3L_18284510_DEL [dm3] 3L_18291410_DEL [dm6]	TG	T	2.925e^-4	0.879	DOWNSTREAM CG5103 INTERGENIC
3R	15957431	3R_15957431_SNP [dm3] 3R_20131709_SNP [dm6]	G	A	2.933e^-4	0.879	INTERGENIC
2L	3861543	2L_3861543_SNP [dm3] 2L_3861543_SNP [dm6]	T	A	2.935e^-4	0.879	INTRON CR44078	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	12330608	2R_12330608_SNP [dm3] 2R_16443103_SNP [dm6]	A	T	2.943e^-4	0.879	UPSTREAM CG4409 INTERGENIC
2L	10449998	2L_10449998_SNP [dm3] 2L_10449998_SNP [dm6]	T	C	2.943e^-4	0.879	UTR_3_PRIME loh DOWNSTREAM ppk10
3R	25930739	3R_25930739_SNP [dm3] 3R_30105017_SNP [dm6]	C	T	2.949e^-4	0.879	INTRON sima
3L	5487171	3L_5487171_SNP [dm3] 3L_5494071_SNP [dm6]	T	A	2.950e^-4	0.879	EXON CR44520
3R	6902278	3R_6902278_SNP [dm3] 3R_11076556_SNP [dm6]	G	A	2.960e^-4	0.879	INTERGENIC
2L	17324984	2L_17324984_SNP [dm3] 2L_17324984_SNP [dm6]	T	C	2.961e^-4	0.879	INTERGENIC
2L	14717249	2L_14717249_SNP [dm3] 2L_14717249_SNP [dm6]	G	A	2.968e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_cad
2L	13228680	2L_13228680_SNP [dm3] 2L_13228680_SNP [dm6]	A	C	2.970e^-4	0.879	DOWNSTREAM CG16813 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16310981	2R_16310981_SNP [dm3] 2R_20423476_SNP [dm6]	T	C	2.970e^-4	0.879	UPSTREAM CG12484 INTERGENIC
3R	14431218	3R_14431218_SNP [dm3] 3R_18605496_SNP [dm6]	G	A	2.972e^-4	0.879	INTRON qin & 1 other
2L	14746010	2L_14746010_SNP [dm3] 2L_14746010_SNP [dm6]	G	T	2.973e^-4	0.879	UPSTREAM CG42587 & 1 other DOWNSTREAM CR45458 EXON CR45459
3R	6965713	3R_6965713_SNP [dm3] 3R_11139991_SNP [dm6]	C	A	2.973e^-4	0.879	DOWNSTREAM CG4706 INTERGENIC
2L	17566804	2L_17566804_SNP [dm3] 2L_17566804_SNP [dm6]	T	G	2.975e^-4	0.879	DOWNSTREAM mir-124 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15960028	3R_15960028_SNP [dm3] 3R_20134306_SNP [dm6]	G	A	2.977e^-4	0.879	INTERGENIC
3L	1352732	3L_1352732_SNP [dm3] 3L_1352732_SNP [dm6]	T	C	2.982e^-4	0.879	UTR_3_PRIME 312 DOWNSTREAM 312 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2R	8120570	2R_8120570_SNP [dm3] 2R_12233065_SNP [dm6]	A	T	2.993e^-4	0.879	DOWNSTREAM CR44313 INTERGENIC
3L	11703579	3L_11703579_SNP [dm3] 3L_11710479_SNP [dm6]	A	G	2.996e^-4	0.879	SYNONYMOUS_CODING mtTFB1 UTR_3_PRIME Ccdc56 DOWNSTREAM crim	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16417249	3L_16417249_SNP [dm3] 3L_16424149_SNP [dm6]	A	T	3.002e^-4	0.879	INTRON CG33158 & 1 other
3R	9338718	3R_9338718_SNP [dm3] 3R_13512996_SNP [dm6]	C	T	3.016e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	3328216	3R_3328216_SNP [dm3] 3R_7502494_SNP [dm6]	G	C	3.017e^-4	0.879	UPSTREAM CG1287 INTRON alpha-Est9
2L	7868989	2L_7868989_SNP [dm3] 2L_7868989_SNP [dm6]	G	A	3.028e^-4	0.879	INTRON Proc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15451881	X_15451881_SNP [dm3] X_15557848_SNP [dm6]	A	G	3.038e^-4	0.879	INTERGENIC
2R	7321865	2R_7321865_SNP [dm3] 2R_11434360_SNP [dm6]	G	A	3.039e^-4	0.879	INTERGENIC
2R	11366981	2R_11366981_DEL [dm3] 2R_15479476_DEL [dm6]	GCG	G	3.045e^-4	0.879	INTRON CG8180	TF binding site mE1_TFBS_HSA
X	21099104	X_21099104_SNP [dm3] X_21228077_SNP [dm6]	A	C	3.045e^-4	0.879	INTRON CG32521
X	7882904	X_7882904_SNP [dm3] X_7988871_SNP [dm6]	A	G	3.048e^-4	0.879	INTERGENIC
3R	13465176	3R_13465176_SNP [dm3] 3R_17639454_SNP [dm6]	A	G	3.052e^-4	0.879	INTRON CG43175 EXON CR45222
3R	14214676	3R_14214676_SNP [dm3] 3R_18388954_SNP [dm6]	G	A	3.055e^-4	0.879	SYNONYMOUS_CODING Vha100-4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	27556114	3R_27556114_SNP [dm3] 3R_31730392_SNP [dm6]	C	T	3.058e^-4	0.879	SYNONYMOUS_CODING ttk INTRON ttk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27565079	3R_27565079_DEL [dm3] 3R_31739357_DEL [dm6]	CT	A	3.058e^-4	0.879	UPSTREAM Ef1alpha100E INTRON Ef1alpha100E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	27575876	3R_27575876_SNP [dm3] 3R_31750154_SNP [dm6]	G	A	3.058e^-4	0.879	NON_SYNONYMOUS_CODING CG1910	TF binding site mE1_TFBS_sens
3R	27587549	3R_27587549_SNP [dm3] 3R_31761827_SNP [dm6]	C	T	3.058e^-4	0.879	UPSTREAM Smvt INTERGENIC
3R	27784891	3R_27784891_SNP [dm3] 3R_31959169_SNP [dm6]	G	A	3.058e^-4	0.879	INTRON heph
3R	27823743	3R_27823743_SNP [dm3] 3R_31998021_SNP [dm6]	G	T	3.060e^-4	0.879	INTRON heph
3R	16018836	3R_16018836_SNP [dm3] 3R_20193114_SNP [dm6]	G	A	3.065e^-4	0.879	INTERGENIC
2R	3422355	2R_3422355_SNP [dm3] 2R_7534850_SNP [dm6]	A	T	3.080e^-4	0.879	UPSTREAM Cyt-b5 INTRON Cyt-b5	TF binding site mE1_TFBS_cnc
3R	27640934	3R_27640934_SNP [dm3] 3R_31815212_SNP [dm6]	G	T	3.083e^-4	0.879	INTRON RhoGAP100F
2R	9612868	2R_9612868_SNP [dm3] 2R_13725363_SNP [dm6]	T	C	3.091e^-4	0.879	INTRON fas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19346173	X_19346173_SNP [dm3] X_19452140_SNP [dm6]	T	A	3.092e^-4	0.879	INTRON kek5
3L	4528969	3L_4528969_SNP [dm3] 3L_4528969_SNP [dm6]	A	C	3.092e^-4	0.879	INTRON Tie
4	389051	4_389051_DEL [dm3] 4_368425_DEL [dm6]	AA	A	3.094e^-4	0.879	INTRON Hcf
2R	16961809	2R_16961809_SNP [dm3] 2R_21074304_SNP [dm6]	G	T	3.104e^-4	0.879	INTRON Treh
3R	15962757	3R_15962757_SNP [dm3] 3R_20137035_SNP [dm6]	T	A	3.105e^-4	0.879	INTERGENIC
3L	12068825	3L_12068825_DEL [dm3] 3L_12075725_DEL [dm6]	CC	C	3.108e^-4	0.879	INTRON Sema-5c
3R	934529	3R_934529_SNP [dm3] 3R_5108807_SNP [dm6]	C	T	3.108e^-4	0.879	NON_SYNONYMOUS_CODING CG43131	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17355846	2L_17355846_SNP [dm3] 2L_17355846_SNP [dm6]	A	T	3.135e^-4	0.879	DOWNSTREAM CR44345 INTERGENIC
2R	11423994	2R_11423994_SNP [dm3] 2R_15536489_SNP [dm6]	G	T	3.135e^-4	0.879	SPLICE_SITE_REGION CG30471 INTRON CG30471
2R	16961937	2R_16961937_SNP [dm3] 2R_21074432_SNP [dm6]	G	A	3.139e^-4	0.879	INTRON Treh
X	12388741	X_12388741_SNP [dm3] X_12494708_SNP [dm6]	G	A	3.155e^-4	0.879	SYNONYMOUS_CODING Mks1
2L	9410676	2L_9410676_SNP [dm3] 2L_9410676_SNP [dm6]	A	T	3.162e^-4	0.879	INTRON Shawl
X	12021758	X_12021758_SNP [dm3] X_12127725_SNP [dm6]	C	G	3.162e^-4	0.879	UPSTREAM Ten-a INTRON Ten-a
X	7614807	X_7614807_SNP [dm3] X_7720774_SNP [dm6]	A	T	3.167e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	14082599	X_14082599_SNP [dm3] X_14188566_SNP [dm6]	G	T	3.168e^-4	0.879	UPSTREAM CG11585 DOWNSTREAM CG12481 INTERGENIC
2L	14705047	2L_14705047_SNP [dm3] 2L_14705047_SNP [dm6]	G	A	3.171e^-4	0.879	INTERGENIC
3L	10292357	3L_10292357_SNP [dm3] 3L_10299257_SNP [dm6]	T	C	3.173e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15956553	3R_15956553_SNP [dm3] 3R_20130831_SNP [dm6]	C	A	3.175e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14206034	3L_14206034_SNP [dm3] 3L_14212934_SNP [dm6]	A	T	3.189e^-4	0.879	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	9726526	3R_9726526_SNP [dm3] 3R_13900804_SNP [dm6]	A	G	3.196e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11970514	3R_11970514_SNP [dm3] 3R_16144792_SNP [dm6]	T	G	3.202e^-4	0.879	UTR_3_PRIME Sb DOWNSTREAM CG5903
2L	9674531	2L_9674531_SNP [dm3] 2L_9674531_SNP [dm6]	T	C	3.208e^-4	0.879	INTERGENIC
3R	26279913	3R_26279913_DEL [dm3] 3R_30454191_DEL [dm6]	AT	A	3.211e^-4	0.879	UPSTREAM aralar1 INTRON aralar1
3R	22687503	3R_22687503_SNP [dm3] 3R_26861781_SNP [dm6]	C	T	3.213e^-4	0.879	NON_SYNONYMOUS_CODING Lerp UPSTREAM mir-1012
2L	1239418	2L_1239418_SNP [dm3] 2L_1239418_SNP [dm6]	A	G	3.213e^-4	0.879	UPSTREAM CG5397 INTERGENIC
3R	14794570	3R_14794570_SNP [dm3] 3R_18968848_SNP [dm6]	A	G	3.215e^-4	0.879	INTRON CG42613 & 1 other
2L	10191576	2L_10191576_SNP [dm3] 2L_10191576_SNP [dm6]	T	G	3.220e^-4	0.879	UPSTREAM CG31874 INTRON Sur
2R	15061104	2R_15061104_SNP [dm3] 2R_19173599_SNP [dm6]	T	C	3.221e^-4	0.879	SYNONYMOUS_CODING CG10737
2L	11881455	2L_11881455_SNP [dm3] 2L_11881455_SNP [dm6]	A	G	3.221e^-4	0.879	INTRON Pde1c	TF binding site mE1_TFBS_inv
3L	21639483	3L_21639483_SNP [dm3] 3L_21646383_SNP [dm6]	G	T	3.223e^-4	0.879	INTRON CG43980
3L	433104	3L_433104_SNP [dm3] 3L_433104_SNP [dm6]	C	A	3.230e^-4	0.879	DOWNSTREAM CG13891 & 1 other INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	12355675	2R_12355675_SNP [dm3] 2R_16468170_SNP [dm6]	T	C	3.231e^-4	0.879	UPSTREAM CheB53b DOWNSTREAM CheB53a INTERGENIC
3R	27574087	3R_27574087_SNP [dm3] 3R_31748365_SNP [dm6]	C	A	3.237e^-4	0.879	UPSTREAM CG1910 & 1 other INTRON CG1910	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	1277524	3L_1277524_SNP [dm3] 3L_1277524_SNP [dm6]	C	T	3.250e^-4	0.879	INTRON CG32333
3L	8853126	3L_8853126_INS [dm3] 3L_8860026_INS [dm6]	T	TTTA	3.251e^-4	0.879	INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	6276396	2L_6276396_MNP [dm3] 2L_6276396_MNP [dm6]	GAT	AGG	3.265e^-4	0.879	INTRON Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16829515	3R_16829515_SNP [dm3] 3R_21003793_SNP [dm6]	T	C	3.268e^-4	0.879	INTRON Calx
3R	12439187	3R_12439187_SNP [dm3] 3R_16613465_SNP [dm6]	C	T	3.273e^-4	0.879	SYNONYMOUS_CODING CG10340 UPSTREAM CG12783	TF binding site mE1_TFBS_sens
3R	13966877	3R_13966877_SNP [dm3] 3R_18141155_SNP [dm6]	A	G	3.276e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13966889	3R_13966889_SNP [dm3] 3R_18141167_SNP [dm6]	T	A	3.276e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27569867	3R_27569867_SNP [dm3] 3R_31744145_SNP [dm6]	C	T	3.279e^-4	0.879	UTR_3_PRIME CG1890 UPSTREAM CG1896 DOWNSTREAM Ef1alpha100E	TF binding site BDTNP1_TFBS_dl
3L	1274797	3L_1274797_SNP [dm3] 3L_1274797_SNP [dm6]	C	A	3.280e^-4	0.879	DOWNSTREAM CG9134 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	10013105	3L_10013105_SNP [dm3] 3L_10020005_SNP [dm6]	C	G	3.280e^-4	0.879	INTRON dpr6
3R	3701718	3R_3701718_SNP [dm3] 3R_7875996_SNP [dm6]	T	G	3.284e^-4	0.879	INTRON CG17816
2R	11815615	2R_11815615_SNP [dm3] 2R_15928110_SNP [dm6]	T	A	3.288e^-4	0.879	START_GAINED bdg UTR_5_PRIME bdg INTRON bdg
2L	3138360	2L_3138360_SNP [dm3] 2L_3138360_SNP [dm6]	T	C	3.290e^-4	0.879	INTRON toc
3R	15358536	3R_15358536_SNP [dm3] 3R_19532814_SNP [dm6]	G	A	3.298e^-4	0.879	INTRON Dys
3L	13646673	3L_13646673_SNP [dm3] 3L_13653573_SNP [dm6]	G	A	3.300e^-4	0.879	INTRON bru-3	TF binding site mE1_TFBS_HSA
3R	21971441	3R_21971441_SNP [dm3] 3R_26145719_SNP [dm6]	C	T	3.305e^-4	0.879	INTERGENIC
2R	12711105	2R_12711105_SNP [dm3] 2R_16823600_SNP [dm6]	C	T	3.310e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	2985358	3L_2985358_SNP [dm3] 3L_2985358_SNP [dm6]	C	A	3.320e^-4	0.879	INTERGENIC
X	15566618	X_15566618_SNP [dm3] X_15672585_SNP [dm6]	C	T	3.327e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	446692	3L_446692_SNP [dm3] 3L_446692_SNP [dm6]	A	G	3.328e^-4	0.879	INTRON klar	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	18991429	2R_18991429_SNP [dm3] 2R_23103906_SNP [dm6]	T	G	3.349e^-4	0.879	UPSTREAM Gr59c DOWNSTREAM Gr59d INTERGENIC
2R	15159496	2R_15159496_SNP [dm3] 2R_19271991_SNP [dm6]	A	T	3.354e^-4	0.879	INTRON rib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
X	12104896	X_12104896_SNP [dm3] X_12210863_SNP [dm6]	A	G	3.358e^-4	0.879	INTRON Ten-a
2R	16659349	2R_16659349_SNP [dm3] 2R_20771844_SNP [dm6]	C	T	3.359e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	15784672	3L_15784672_SNP [dm3] 3L_15791572_SNP [dm6]	T	A	3.365e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	18892495	3R_18892495_SNP [dm3] 3R_23066773_SNP [dm6]	C	A	3.371e^-4	0.879	START_GAINED CG17111 UTR_5_PRIME CG17111
2R	897533	2R_897533_DEL [dm3] 2R_5010028_DEL [dm6]	CG	C	3.387e^-4	0.879	INTRON Ir41a
3L	1289557	3L_1289557_SNP [dm3] 3L_1289557_SNP [dm6]	G	A	3.389e^-4	0.879	INTRON CG32333	TF binding site mE1_TFBS_chinmo
3L	2011490	3L_2011490_SNP [dm3] 3L_2011490_SNP [dm6]	A	T	3.393e^-4	0.879	UPSTREAM CR44535 INTERGENIC
3R	13574267	3R_13574267_SNP [dm3] 3R_17748545_SNP [dm6]	G	A	3.404e^-4	0.879	INTERGENIC
3R	12439241	3R_12439241_SNP [dm3] 3R_16613519_SNP [dm6]	A	G	3.414e^-4	0.879	SYNONYMOUS_CODING CG10340 UPSTREAM CG12783	TF binding site mE1_TFBS_sens
3L	10010895	3L_10010895_SNP [dm3] 3L_10017795_SNP [dm6]	G	T	3.416e^-4	0.879	INTRON dpr6
2L	11974442	2L_11974442_SNP [dm3] 2L_11974442_SNP [dm6]	A	T	3.416e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11244968	3R_11244968_SNP [dm3] 3R_15419246_SNP [dm6]	C	T	3.436e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	22687498	3R_22687498_SNP [dm3] 3R_26861776_SNP [dm6]	C	A	3.441e^-4	0.879	SYNONYMOUS_CODING Lerp UPSTREAM mir-1012
3R	15957390	3R_15957390_SNP [dm3] 3R_20131668_SNP [dm6]	A	G	3.442e^-4	0.879	INTERGENIC
3L	23646333	3L_23646333_SNP [dm3] 3L_23653233_SNP [dm6]	T	A	3.448e^-4	0.879	INTRON AGO3	transposable element FlyBase
3L	11703578	3L_11703578_SNP [dm3] 3L_11710478_SNP [dm6]	T	C	3.455e^-4	0.879	NON_SYNONYMOUS_CODING mtTFB1 UTR_3_PRIME Ccdc56 DOWNSTREAM crim	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9742108	3R_9742108_SNP [dm3] 3R_13916386_SNP [dm6]	C	T	3.461e^-4	0.879	INTERGENIC
X	19241094	X_19241094_INS [dm3] X_19347061_INS [dm6]	T	TA	3.469e^-4	0.879	INTRON nAChRalpha7
2R	14354193	2R_14354193_SNP [dm3] 2R_18466688_SNP [dm6]	G	A	3.476e^-4	0.879	INTRON CG30116	TF binding site mE1_TFBS_chinmo
3L	821114	3L_821114_SNP [dm3] 3L_821114_SNP [dm6]	A	T	3.503e^-4	0.879	EXON CR43883	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18456133	X_18456133_SNP [dm3] X_18562100_SNP [dm6]	C	T	3.511e^-4	0.879	INTRON Bx	TF binding site mE1_TFBS_chinmo
2L	4936350	2L_4936350_SNP [dm3] 2L_4936350_SNP [dm6]	T	G	3.520e^-4	0.879	UTR_5_PRIME hoe2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6954530	3L_6954530_SNP [dm3] 3L_6961430_SNP [dm6]	T	A	3.522e^-4	0.879	INTRON sgl
3L	9814616	3L_9814616_SNP [dm3] 3L_9821516_SNP [dm6]	C	T	3.523e^-4	0.879	UPSTREAM CG43897 INTRON CG43897
3L	11353718	3L_11353718_SNP [dm3] 3L_11360618_SNP [dm6]	C	T	3.530e^-4	0.879	INTERGENIC
2R	20299156	2R_20299156_SNP [dm3] 2R_24411633_SNP [dm6]	G	A	3.532e^-4	0.879	UPSTREAM CG45069 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	962557	3L_962557_SNP [dm3] 3L_962557_SNP [dm6]	T	G	3.534e^-4	0.879	INTRON Glut1
3R	13653968	3R_13653968_SNP [dm3] 3R_17828246_SNP [dm6]	T	G	3.536e^-4	0.879	INTRON tinc	TF binding site mE1_TFBS_cad
X	22178186	X_22178186_INS [dm3] X_22776350_INS [dm6]	A	AA	3.542e^-4	0.879	INTRON CR44997	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14204344	3L_14204344_SNP [dm3] 3L_14211244_SNP [dm6]	G	A	3.544e^-4	0.879	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2R	18576763	2R_18576763_INS [dm3] 2R_22689258_INS [dm6]	T	TT	3.545e^-4	0.879	UPSTREAM CR44763 & 1 other EXON CR44762	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	8947163	2L_8947163_SNP [dm3] 2L_8947163_SNP [dm6]	T	A	3.554e^-4	0.879	UPSTREAM C1GalTA INTRON C1GalTA
X	13506744	X_13506744_SNP [dm3] X_13612711_SNP [dm6]	G	A	3.555e^-4	0.879	NON_SYNONYMOUS_CODING BthD SPLICE_SITE_REGION BthD UPSTREAM Ndc80 DOWNSTREAM tth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	9526618	2R_9526618_SNP [dm3] 2R_13639113_SNP [dm6]	C	T	3.561e^-4	0.879	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14550487	X_14550487_SNP [dm3] X_14656454_SNP [dm6]	A	C	3.564e^-4	0.879	INTERGENIC
2R	1220164	2R_1220164_SNP [dm3] 2R_5332659_SNP [dm6]	A	T	3.570e^-4	0.879	INTERGENIC
3R	12630412	3R_12630412_SNP [dm3] 3R_16804690_SNP [dm6]	A	T	3.576e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9331765	3R_9331765_SNP [dm3] 3R_13506043_SNP [dm6]	C	A	3.581e^-4	0.879	INTERGENIC
2L	2214588	2L_2214588_SNP [dm3] 2L_2214588_SNP [dm6]	C	T	3.582e^-4	0.879	NON_SYNONYMOUS_CODING CG34174 UPSTREAM Uch DOWNSTREAM CG10880	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	1357764	2R_1357764_SNP [dm3] 2R_5470259_SNP [dm6]	T	A	3.588e^-4	0.879	INTRON CG30440	transposable element FlyBase
X	12511001	X_12511001_SNP [dm3] X_12616968_SNP [dm6]	G	T	3.590e^-4	0.879	INTRON CG11085	TF binding site BDTNP1_TFBS_dl
X	6245040	X_6245040_SNP [dm3] X_6351007_SNP [dm6]	G	A	3.592e^-4	0.879	UPSTREAM CG3446 INTRON kdn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	25935548	3R_25935548_INS [dm3] 3R_30109826_INS [dm6]	G	GAT	3.596e^-4	0.879	INTRON sima	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2419744	2L_2419744_SNP [dm3] 2L_2419744_SNP [dm6]	T	G	3.597e^-4	0.879	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
3R	9726514	3R_9726514_DEL [dm3] 3R_13900792_DEL [dm6]	GTT	C	3.609e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5604044	2L_5604044_SNP [dm3] 2L_5604044_SNP [dm6]	C	A	3.633e^-4	0.879	INTRON CG14010
2L	16800484	2L_16800484_SNP [dm3] 2L_16800484_SNP [dm6]	A	G	3.635e^-4	0.879	NON_SYNONYMOUS_CODING Ugt36Bc
2R	7812306	2R_7812306_SNP [dm3] 2R_11924801_SNP [dm6]	T	C	3.649e^-4	0.879	INTERGENIC
2L	9605110	2L_9605110_SNP [dm3] 2L_9605110_SNP [dm6]	T	A	3.649e^-4	0.879	INTERGENIC	regulatory region REDfly_CRMs
2R	18932196	2R_18932196_DEL [dm3] 2R_23044673_DEL [dm6]	TATGT	T	3.657e^-4	0.879	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	18333596	X_18333596_SNP [dm3] X_18439563_SNP [dm6]	G	T	3.657e^-4	0.879	UPSTREAM CG43841 DOWNSTREAM CG32551 INTRON CG32548
3L	4251220	3L_4251220_SNP [dm3] 3L_4251220_SNP [dm6]	A	T	3.658e^-4	0.879	SYNONYMOUS_CODING ago	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	12286799	2R_12286799_SNP [dm3] 2R_16399294_SNP [dm6]	C	T	3.661e^-4	0.879	SYNONYMOUS_CODING Sema-2b	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17399395	2R_17399395_SNP [dm3] 2R_21511890_SNP [dm6]	A	G	3.667e^-4	0.879	SYNONYMOUS_CODING MESK2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10013140	3L_10013140_SNP [dm3] 3L_10020040_SNP [dm6]	T	A	3.669e^-4	0.879	INTRON dpr6
X	17117373	X_17117373_SNP [dm3] X_17223340_SNP [dm6]	T	A	3.670e^-4	0.879	SYNONYMOUS_CODING CG34327 DOWNSTREAM CG5172
2R	18569086	2R_18569086_SNP [dm3] 2R_22681581_SNP [dm6]	A	G	3.672e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11582631	3R_11582631_SNP [dm3] 3R_15756909_SNP [dm6]	G	T	3.676e^-4	0.879	INTERGENIC
3R	12726458	3R_12726458_SNP [dm3] 3R_16900736_SNP [dm6]	T	C	3.691e^-4	0.879	UPSTREAM iab-8 INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19535680	2R_19535680_SNP [dm3] 2R_23648157_SNP [dm6]	G	A	3.692e^-4	0.879	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4584370	2L_4584370_SNP [dm3] 2L_4584370_SNP [dm6]	T	C	3.695e^-4	0.879	INTRON dp
3L	4820083	3L_4820083_SNP [dm3] 3L_4820083_SNP [dm6]	A	G	3.695e^-4	0.879	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4820086	3L_4820086_SNP [dm3] 3L_4820086_SNP [dm6]	G	A	3.695e^-4	0.879	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4820206	3L_4820206_SNP [dm3] 3L_4820206_SNP [dm6]	A	G	3.695e^-4	0.879	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2419719	2L_2419719_SNP [dm3] 2L_2419719_SNP [dm6]	G	A	3.696e^-4	0.879	INTRON CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8240978	3R_8240978_SNP [dm3] 3R_12415256_SNP [dm6]	C	T	3.707e^-4	0.879	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_sens
2L	4278889	2L_4278889_SNP [dm3] 2L_4278889_SNP [dm6]	C	T	3.709e^-4	0.879	NON_SYNONYMOUS_CODING Art2	TF binding site BDTNP1_TFBS_dl
3L	440112	3L_440112_SNP [dm3] 3L_440112_SNP [dm6]	C	A	3.710e^-4	0.879	INTRON klar	TF binding site mE1_TFBS_sens
2L	922178	2L_922178_SNP [dm3] 2L_922178_SNP [dm6]	T	A	3.713e^-4	0.879	UPSTREAM CG4341 INTERGENIC
3R	14523254	3R_14523254_SNP [dm3] 3R_18697532_SNP [dm6]	A	T	3.714e^-4	0.879	INTERGENIC
X	7112006	X_7112006_SNP [dm3] X_7217973_SNP [dm6]	A	G	3.716e^-4	0.879	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da
X	7112008	X_7112008_SNP [dm3] X_7217975_SNP [dm6]	T	A	3.716e^-4	0.879	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da
2R	11268654	2R_11268654_SNP [dm3] 2R_15381149_SNP [dm6]	A	C	3.724e^-4	0.879	UPSTREAM SRPK & 1 other INTRON SRPK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17066079	2L_17066079_SNP [dm3] 2L_17066079_SNP [dm6]	C	A	3.726e^-4	0.879	INTERGENIC
X	7614826	X_7614826_SNP [dm3] X_7720793_SNP [dm6]	A	C	3.727e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	13328394	2R_13328394_SNP [dm3] 2R_17440889_SNP [dm6]	C	G	3.728e^-4	0.879	INTRON EDTP & 1 other
3L	18913594	3L_18913594_SNP [dm3] 3L_18920494_SNP [dm6]	C	A	3.735e^-4	0.879	UTR_3_PRIME CG3819 UPSTREAM CG18223 DOWNSTREAM CG3819
2R	7661234	2R_7661234_DEL [dm3] 2R_11773729_DEL [dm6]	ATGATATGAACA...	A	3.736e^-4	0.879	INTRON ths	TF binding site mE1_TFBS_sens
3L	21193852	3L_21193852_DEL [dm3] 3L_21200752_DEL [dm6]	CGACGTGCCGGGCGAAAGC...	C	3.743e^-4	0.879	UPSTREAM CG33056 INTRON CG33054 & 1 other
X	15255337	X_15255337_SNP [dm3] X_15361304_SNP [dm6]	C	A	3.746e^-4	0.879	UPSTREAM Pp1-13C INTRON acj6
2L	6470467	2L_6470467_SNP [dm3] 2L_6470467_SNP [dm6]	A	G	3.747e^-4	0.879	INTRON mmy
3L	7157764	3L_7157764_INS [dm3] 3L_7164664_INS [dm6]	A	AAAATGATCAGA...	3.759e^-4	0.879	INTRON Dscam2
X	13506696	X_13506696_SNP [dm3] X_13612663_SNP [dm6]	C	A	3.764e^-4	0.879	NON_SYNONYMOUS_CODING BthD UPSTREAM Ndc80 DOWNSTREAM tth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	15451192	X_15451192_SNP [dm3] X_15557159_SNP [dm6]	T	C	3.769e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_HSA
X	15451202	X_15451202_SNP [dm3] X_15557169_SNP [dm6]	G	A	3.769e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_HSA
X	15451204	X_15451204_SNP [dm3] X_15557171_SNP [dm6]	G	T	3.769e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	13603019	2R_13603019_SNP [dm3] 2R_17715514_SNP [dm6]	G	C	3.782e^-4	0.879	INTRON CG6424	TF binding site BDTNP1_TFBS_dl
X	11314267	X_11314267_SNP [dm3] X_11420234_SNP [dm6]	G	A	3.786e^-4	0.879	INTERGENIC
3R	25930113	3R_25930113_SNP [dm3] 3R_30104391_SNP [dm6]	G	A	3.788e^-4	0.879	SYNONYMOUS_CODING sima UTR_5_PRIME sima INTRON sima
3R	25933220	3R_25933220_SNP [dm3] 3R_30107498_SNP [dm6]	A	G	3.788e^-4	0.879	INTRON sima
3R	23207622	3R_23207622_SNP [dm3] 3R_27381900_SNP [dm6]	A	T	3.790e^-4	0.879	UTR_3_PRIME side INTRON side
2R	12460180	2R_12460180_SNP [dm3] 2R_16572675_SNP [dm6]	A	C	3.800e^-4	0.879	INTRON CG4927
X	17115482	X_17115482_SNP [dm3] X_17221449_SNP [dm6]	A	G	3.801e^-4	0.879	UTR_5_PRIME CG5172
2L	12616346	2L_12616346_SNP [dm3] 2L_12616346_SNP [dm6]	C	T	3.805e^-4	0.879	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	8441032	2L_8441032_SNP [dm3] 2L_8441032_SNP [dm6]	C	T	3.811e^-4	0.879	SYNONYMOUS_CODING mus201
2R	15799271	2R_15799271_SNP [dm3] 2R_19911766_SNP [dm6]	A	G	3.812e^-4	0.879	UPSTREAM CR44573 INTERGENIC
2R	1385661	2R_1385661_SNP [dm3] 2R_5498156_SNP [dm6]	T	C	3.816e^-4	0.879	INTRON CG30438	transposable element FlyBase
2L	10620255	2L_10620255_SNP [dm3] 2L_10620255_SNP [dm6]	T	C	3.819e^-4	0.879	INTRON Trim9
3L	2825393	3L_2825393_SNP [dm3] 3L_2825393_SNP [dm6]	C	T	3.826e^-4	0.879	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	12368268	3L_12368268_SNP [dm3] 3L_12375168_SNP [dm6]	G	A	3.828e^-4	0.879	INTRON Ncc69
2R	9269365	2R_9269365_SNP [dm3] 2R_13381860_SNP [dm6]	G	A	3.829e^-4	0.879	INTERGENIC
3L	16732496	3L_16732496_DEL [dm3] 3L_16739396_DEL [dm6]	ACAG	A	3.833e^-4	0.879	DOWNSTREAM CG9701 INTERGENIC
2R	18577002	2R_18577002_SNP [dm3] 2R_22689497_SNP [dm6]	T	A	3.837e^-4	0.879	UPSTREAM ppa & 1 other DOWNSTREAM CR44762 EXON CR44763	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	14804089	3R_14804089_SNP [dm3] 3R_18978367_SNP [dm6]	A	T	3.840e^-4	0.879	UTR_3_PRIME CG12269 DOWNSTREAM Smu1 & 1 other
3R	27501919	3R_27501919_INS [dm3] 3R_31676197_INS [dm6]	A	ACGA	3.844e^-4	0.879	INTRON CG1815	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8130497	2R_8130497_SNP [dm3] 2R_12242992_SNP [dm6]	C	T	3.844e^-4	0.879	INTRON CG43316
3R	13443584	3R_13443584_INS [dm3] 3R_17617862_INS [dm6]	A	AT	3.859e^-4	0.879	DOWNSTREAM tRNA:P:90Ca & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_zfh1
X	13506491	X_13506491_SNP [dm3] X_13612458_SNP [dm6]	A	G	3.861e^-4	0.879	SYNONYMOUS_CODING BthD UPSTREAM Ndc80 DOWNSTREAM tth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	12616492	2L_12616492_SNP [dm3] 2L_12616492_SNP [dm6]	C	A	3.863e^-4	0.879	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
X	9179570	X_9179570_SNP [dm3] X_9285537_SNP [dm6]	C	A	3.868e^-4	0.879	INTRON lz
3R	9298647	3R_9298647_SNP [dm3] 3R_13472925_SNP [dm6]	A	C	3.883e^-4	0.879	INTERGENIC
2R	19097092	2R_19097092_SNP [dm3] 2R_23209569_SNP [dm6]	A	G	3.894e^-4	0.879	DOWNSTREAM LS2 INTERGENIC	TF binding site mE1_TFBS_sens
2L	4498593	2L_4498593_SNP [dm3] 2L_4498593_SNP [dm6]	T	G	3.896e^-4	0.879	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12386851	3R_12386851_SNP [dm3] 3R_16561129_SNP [dm6]	T	A	3.899e^-4	0.879	INTRON CG42342
4	358998	4_358998_SNP [dm3] 4_338372_SNP [dm6]	A	C	3.899e^-4	0.879	INTRON PMCA
2R	19487801	2R_19487801_SNP [dm3] 2R_23600278_SNP [dm6]	A	T	3.905e^-4	0.879	UPSTREAM CG42560 DOWNSTREAM apt & 2 others INTRON CG42559 & 1 other
X	11312955	X_11312955_SNP [dm3] X_11418922_SNP [dm6]	A	T	3.911e^-4	0.879	INTERGENIC
3R	25946732	3R_25946732_SNP [dm3] 3R_30121010_SNP [dm6]	C	A	3.911e^-4	0.879	UTR_3_PRIME sima
2R	12469953	2R_12469953_SNP [dm3] 2R_16582448_SNP [dm6]	G	A	3.914e^-4	0.879	INTRON Cdk4 EXON CR44375	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	5633196	3L_5633196_SNP [dm3] 3L_5640096_SNP [dm6]	C	A	3.920e^-4	0.879	INTRON Blimp-1
3R	7047698	3R_7047698_SNP [dm3] 3R_11221976_SNP [dm6]	T	A	3.921e^-4	0.879	UPSTREAM snoRNA:Me18S-C1096 & 2 others DOWNSTREAM CR31144 INTRON RpL3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA
2L	2424590	2L_2424590_SNP [dm3] 2L_2424590_SNP [dm6]	G	A	3.922e^-4	0.879	UTR_3_PRIME CG9886 UPSTREAM CG44139
X	19773802	X_19773802_DEL [dm3] X_19879769_DEL [dm6]	AA	A	3.922e^-4	0.879	INTRON Hers
3R	4132095	3R_4132095_SNP [dm3] 3R_8306373_SNP [dm6]	C	T	3.923e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	494797	3L_494797_INS [dm3] 3L_494797_INS [dm6]	A	AA	3.928e^-4	0.879	INTRON klar
2L	5707192	2L_5707192_SNP [dm3] 2L_5707192_SNP [dm6]	C	A	3.932e^-4	0.879	INTRON CG7236	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11409735	3R_11409735_SNP [dm3] 3R_15584013_SNP [dm6]	G	A	3.933e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4132096	3R_4132096_SNP [dm3] 3R_8306374_SNP [dm6]	G	T	3.933e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	7224298	2L_7224298_SNP [dm3] 2L_7224298_SNP [dm6]	G	C	3.933e^-4	0.879	UTR_3_PRIME Ndae1 INTRON Ndae1
2R	13603037	2R_13603037_DEL [dm3] 2R_17715532_DEL [dm6]	ATTA	A	3.936e^-4	0.879	INTRON CG6424	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	926904	2L_926904_SNP [dm3] 2L_926904_SNP [dm6]	T	G	3.938e^-4	0.879	INTRON CG4341
3L	6547867	3L_6547867_DEL [dm3] 3L_6554767_DEL [dm6]	TT	T	3.947e^-4	0.879	INTRON CG18769
2L	9983874	2L_9983874_SNP [dm3] 2L_9983874_SNP [dm6]	A	C	3.948e^-4	0.879	UPSTREAM bib EXON CR13130	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	11974434	2L_11974434_SNP [dm3] 2L_11974434_SNP [dm6]	T	C	3.951e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9527886	2R_9527886_SNP [dm3] 2R_13640381_SNP [dm6]	T	C	3.951e^-4	0.879	INTRON fas
2R	20151028	2R_20151028_SNP [dm3] 2R_24263505_SNP [dm6]	A	G	3.956e^-4	0.879	INTRON CG3376	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	9527791	2R_9527791_SNP [dm3] 2R_13640286_SNP [dm6]	A	T	3.961e^-4	0.879	INTRON fas
3L	4820755	3L_4820755_SNP [dm3] 3L_4820755_SNP [dm6]	G	C	3.970e^-4	0.879	SYNONYMOUS_CODING Dhc64C
2R	16961827	2R_16961827_SNP [dm3] 2R_21074322_SNP [dm6]	C	G	3.974e^-4	0.879	INTRON Treh
4	321311	4_321311_DEL [dm3] 4_300685_DEL [dm6]	AAATAA	A	3.979e^-4	0.879	INTRON Syt7
3L	1289639	3L_1289639_SNP [dm3] 3L_1289639_SNP [dm6]	T	C	3.986e^-4	0.879	INTRON CG32333
3L	5523685	3L_5523685_SNP [dm3] 3L_5530585_SNP [dm6]	C	T	3.999e^-4	0.879	INTERGENIC
2R	15479810	2R_15479810_SNP [dm3] 2R_19592305_SNP [dm6]	T	G	4.006e^-4	0.879	INTRON sm
3L	16891461	3L_16891461_SNP [dm3] 3L_16898361_SNP [dm6]	T	A	4.012e^-4	0.879	INTRON Lmpt
3L	16891469	3L_16891469_SNP [dm3] 3L_16898369_SNP [dm6]	A	G	4.012e^-4	0.879	INTRON Lmpt
3L	16891472	3L_16891472_SNP [dm3] 3L_16898372_SNP [dm6]	A	T	4.012e^-4	0.879	INTRON Lmpt
3L	16732525	3L_16732525_DEL [dm3] 3L_16739425_DEL [dm6]	AGGT	A	4.018e^-4	0.879	DOWNSTREAM CG9701 INTERGENIC
2L	10280724	2L_10280724_SNP [dm3] 2L_10280724_SNP [dm6]	T	A	4.026e^-4	0.879	NON_SYNONYMOUS_CODING CG34043
3R	25230315	3R_25230315_SNP [dm3] 3R_29404593_SNP [dm6]	C	T	4.029e^-4	0.879	INTRON Ptp99A
3R	12630425	3R_12630425_SNP [dm3] 3R_16804703_SNP [dm6]	T	C	4.035e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13798428	2L_13798428_SNP [dm3] 2L_13798428_SNP [dm6]	T	C	4.037e^-4	0.879	SYNONYMOUS_CODING Sec71	TF binding site mE1_TFBS_cad
2L	13798440	2L_13798440_SNP [dm3] 2L_13798440_SNP [dm6]	T	C	4.037e^-4	0.879	SYNONYMOUS_CODING Sec71	TF binding site mE1_TFBS_cad
2L	3960324	2L_3960324_SNP [dm3] 2L_3960324_SNP [dm6]	G	T	4.044e^-4	0.879	INTRON fred
2L	9650896	2L_9650896_SNP [dm3] 2L_9650896_SNP [dm6]	C	T	4.047e^-4	0.879	SYNONYMOUS_CODING Apoltp
2L	7224374	2L_7224374_SNP [dm3] 2L_7224374_SNP [dm6]	A	T	4.057e^-4	0.879	UTR_3_PRIME Ndae1 INTRON Ndae1
2R	13328392	2R_13328392_SNP [dm3] 2R_17440887_SNP [dm6]	C	A	4.059e^-4	0.879	INTRON EDTP & 1 other
3R	18184958	3R_18184958_SNP [dm3] 3R_22359236_SNP [dm6]	C	A	4.063e^-4	0.879	INTRON Sar1
2R	10644282	2R_10644282_SNP [dm3] 2R_14756777_SNP [dm6]	A	G	4.063e^-4	0.879	UPSTREAM CG10151 DOWNSTREAM Trs31 INTRON CG12859	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12612506	2L_12612506_SNP [dm3] 2L_12612506_SNP [dm6]	T	G	4.065e^-4	0.879	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	9464344	3L_9464344_SNP [dm3] 3L_9471244_SNP [dm6]	C	A	4.071e^-4	0.879	NON_SYNONYMOUS_CODING CG44838 INTRON CG44838	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9810297	2L_9810297_SNP [dm3] 2L_9810297_SNP [dm6]	G	C	4.080e^-4	0.879	INTRON nAChRalpha6
3L	7639758	3L_7639758_SNP [dm3] 3L_7646658_SNP [dm6]	A	T	4.087e^-4	0.879	INTERGENIC
3R	9552678	3R_9552678_SNP [dm3] 3R_13726956_SNP [dm6]	T	A	4.091e^-4	0.879	INTRON CG34383
2R	10501149	2R_10501149_SNP [dm3] 2R_14613644_SNP [dm6]	C	G	4.093e^-4	0.879	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_sens
2R	11503981	2R_11503981_SNP [dm3] 2R_15616476_SNP [dm6]	G	A	4.104e^-4	0.879	INTRON CG42524
3R	9711019	3R_9711019_SNP [dm3] 3R_13885297_SNP [dm6]	C	G	4.123e^-4	0.879	INTERGENIC
3L	11514340	3L_11514340_SNP [dm3] 3L_11521240_SNP [dm6]	A	C	4.125e^-4	0.879	UTR_3_PRIME CG11714 UPSTREAM Fuca
X	7902335	X_7902335_SNP [dm3] X_8008302_SNP [dm6]	C	T	4.133e^-4	0.879	INTRON Tbh
2L	14723216	2L_14723216_SNP [dm3] 2L_14723216_SNP [dm6]	A	T	4.140e^-4	0.879	INTERGENIC
3R	24502598	3R_24502598_SNP [dm3] 3R_28676876_SNP [dm6]	A	C	4.144e^-4	0.879	INTRON CG9990
X	21846323	X_21846323_INS [dm3] X_22444487_INS [dm6]	A	AAA	4.144e^-4	0.879	UTR_5_PRIME CG14621 UPSTREAM CG14621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
X	21097972	X_21097972_SNP [dm3] X_21226945_SNP [dm6]	G	C	4.146e^-4	0.879	INTRON CG32521
3L	18622669	3L_18622669_SNP [dm3] 3L_18629569_SNP [dm6]	T	C	4.156e^-4	0.879	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10518662	2L_10518662_SNP [dm3] 2L_10518662_SNP [dm6]	G	A	4.157e^-4	0.879	SYNONYMOUS_CODING Lrr47
2L	8451044	2L_8451044_DEL [dm3] 2L_8451044_DEL [dm6]	TAATAATT	T	4.160e^-4	0.879	UTR_5_PRIME fu12 INTRON fu12
2R	15796240	2R_15796240_SNP [dm3] 2R_19908735_SNP [dm6]	T	C	4.161e^-4	0.879	INTERGENIC
X	9610424	X_9610424_SNP [dm3] X_9716391_SNP [dm6]	T	C	4.164e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	10644000	2R_10644000_SNP [dm3] 2R_14756495_SNP [dm6]	G	T	4.168e^-4	0.879	UPSTREAM CG12859 & 1 other DOWNSTREAM Trs31 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13229608	2L_13229608_SNP [dm3] 2L_13229608_SNP [dm6]	C	T	4.169e^-4	0.879	UPSTREAM CG16815 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2L	9408771	2L_9408771_SNP [dm3] 2L_9408771_SNP [dm6]	T	G	4.178e^-4	0.879	INTRON Shawl
3L	14524898	3L_14524898_SNP [dm3] 3L_14531798_SNP [dm6]	C	T	4.191e^-4	0.879	INTRON bbg
2L	14768133	2L_14768133_SNP [dm3] 2L_14768133_SNP [dm6]	C	T	4.194e^-4	0.879	DOWNSTREAM CG4701 INTERGENIC
2L	16036481	2L_16036481_SNP [dm3] 2L_16036481_SNP [dm6]	A	T	4.196e^-4	0.879	INTRON beat-Ic	TF binding site mE1_TFBS_cad
2L	2280072	2L_2280072_SNP [dm3] 2L_2280072_SNP [dm6]	G	A	4.197e^-4	0.879	UPSTREAM CR43753 INTERGENIC
3L	22513118	3L_22513118_SNP [dm3] 3L_22520018_SNP [dm6]	G	A	4.203e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7171522	3L_7171522_SNP [dm3] 3L_7178422_SNP [dm6]	A	G	4.210e^-4	0.879	INTRON Dscam2
3R	9739844	3R_9739844_SNP [dm3] 3R_13914122_SNP [dm6]	T	C	4.220e^-4	0.879	INTERGENIC
2L	12129823	2L_12129823_INS [dm3] 2L_12129823_INS [dm6]	T	TTAATTAAGCC...	4.225e^-4	0.879	UTR_3_PRIME CG17211 DOWNSTREAM rho-6
2R	1228860	2R_1228860_SNP [dm3] 2R_5341355_SNP [dm6]	A	T	4.227e^-4	0.879	UPSTREAM CG10465 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	7902682	X_7902682_SNP [dm3] X_8008649_SNP [dm6]	T	C	4.227e^-4	0.879	INTRON Tbh
X	9586139	X_9586139_INS [dm3] X_9692106_INS [dm6]	G	GGGGCAGAGG	4.227e^-4	0.879	EXON CR44016	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13968389	X_13968389_SNP [dm3] X_14074356_SNP [dm6]	C	G	4.236e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	7177404	3R_7177404_SNP [dm3] 3R_11351682_SNP [dm6]	C	T	4.240e^-4	0.879	INTRON pros & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	16775763	2R_16775763_SNP [dm3] 2R_20888258_SNP [dm6]	C	T	4.247e^-4	0.879	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	16775785	2R_16775785_SNP [dm3] 2R_20888280_SNP [dm6]	C	T	4.247e^-4	0.879	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	17588007	2L_17588007_SNP [dm3] 2L_17588007_SNP [dm6]	A	T	4.259e^-4	0.879	DOWNSTREAM CR44411 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17115774	2L_17115774_SNP [dm3] 2L_17115774_SNP [dm6]	G	A	4.264e^-4	0.879	INTERGENIC
3R	12018443	3R_12018443_SNP [dm3] 3R_16192721_SNP [dm6]	T	C	4.276e^-4	0.879	INTRON sra
2L	12110714	2L_12110714_SNP [dm3] 2L_12110714_SNP [dm6]	T	A	4.276e^-4	0.879	UPSTREAM Phae2 DOWNSTREAM Phae1 INTERGENIC	TF binding site mE1_TFBS_Trl
X	7932307	X_7932307_SNP [dm3] X_8038274_SNP [dm6]	C	A	4.292e^-4	0.879	UTR_3_PRIME fs_1_h UPSTREAM CG2233 DOWNSTREAM fs_1_h
X	7932311	X_7932311_SNP [dm3] X_8038278_SNP [dm6]	A	T	4.292e^-4	0.879	UTR_3_PRIME fs_1_h UPSTREAM CG2233 DOWNSTREAM fs_1_h
3L	5525049	3L_5525049_SNP [dm3] 3L_5531949_SNP [dm6]	T	G	4.296e^-4	0.879	INTERGENIC
X	17606567	X_17606567_DEL [dm3] X_17712534_DEL [dm6]	TAGAGG	A	4.297e^-4	0.879	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	8645616	2R_8645616_SNP [dm3] 2R_12758111_SNP [dm6]	G	A	4.301e^-4	0.879	SYNONYMOUS_CODING Dgkepsilon UPSTREAM ox DOWNSTREAM mRpL18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11582723	3R_11582723_SNP [dm3] 3R_15757001_SNP [dm6]	C	G	4.305e^-4	0.879	INTERGENIC
2L	13258775	2L_13258775_DEL [dm3] 2L_13258775_DEL [dm6]	GTATATG	G	4.311e^-4	0.879	DOWNSTREAM CG31730 & 1 other INTERGENIC
3R	12407480	3R_12407480_SNP [dm3] 3R_16581758_SNP [dm6]	T	A	4.324e^-4	0.879	INTRON Scp2
3R	6928040	3R_6928040_SNP [dm3] 3R_11102318_SNP [dm6]	C	T	4.336e^-4	0.879	DOWNSTREAM CR45579 INTERGENIC
3R	6929330	3R_6929330_SNP [dm3] 3R_11103608_SNP [dm6]	G	A	4.336e^-4	0.879	INTERGENIC
3L	5887370	3L_5887370_SNP [dm3] 3L_5894270_SNP [dm6]	A	G	4.337e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	20855390	3L_20855390_SNP [dm3] 3L_20862290_SNP [dm6]	G	C	4.345e^-4	0.879	INTRON CG32432
3L	18070150	3L_18070150_SNP [dm3] 3L_18077050_SNP [dm6]	A	G	4.346e^-4	0.879	UPSTREAM CR45392 INTERGENIC
3L	9095766	3L_9095766_SNP [dm3] 3L_9102666_SNP [dm6]	A	G	4.349e^-4	0.879	UTR_3_PRIME bol
3R	9550741	3R_9550741_SNP [dm3] 3R_13725019_SNP [dm6]	A	T	4.349e^-4	0.879	INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2L	4114275	2L_4114275_SNP [dm3] 2L_4114275_SNP [dm6]	G	A	4.351e^-4	0.879	UTR_3_PRIME ed
3R	4759893	3R_4759893_INS [dm3] 3R_8934171_INS [dm6]	A	ACATA	4.357e^-4	0.879	UPSTREAM osk DOWNSTREAM CR44020 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	19454237	2R_19454237_SNP [dm3] 2R_23566714_SNP [dm6]	T	C	4.359e^-4	0.879	INTRON apt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3894061	2L_3894061_INS [dm3] 2L_3894061_INS [dm6]	A	AA	4.365e^-4	0.879	INTRON capu
3L	8363440	3L_8363440_SNP [dm3] 3L_8370340_SNP [dm6]	T	G	4.368e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	21585986	3L_21585986_SNP [dm3] 3L_21592886_SNP [dm6]	C	T	4.371e^-4	0.879	INTRON TfAP-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16185315	2L_16185315_SNP [dm3] 2L_16185315_SNP [dm6]	A	C	4.372e^-4	0.879	SYNONYMOUS_CODING Ca-alpha1D	TF binding site mE1_TFBS_cad
2L	12616474	2L_12616474_SNP [dm3] 2L_12616474_SNP [dm6]	T	C	4.377e^-4	0.879	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	6344139	2L_6344139_SNP [dm3] 2L_6344139_SNP [dm6]	C	T	4.378e^-4	0.879	INTRON Cpr	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_h mE1_TFBS_HSA
2L	1421912	2L_1421912_SNP [dm3] 2L_1421912_SNP [dm6]	G	A	4.380e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	20532206	2R_20532206_SNP [dm3] 2R_24644683_SNP [dm6]	A	C	4.386e^-4	0.879	INTERGENIC
3R	12725009	3R_12725009_SNP [dm3] 3R_16899287_SNP [dm6]	A	T	4.391e^-4	0.879	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9110650	2R_9110650_SNP [dm3] 2R_13223145_SNP [dm6]	A	T	4.401e^-4	0.879	UPSTREAM Fsn & 1 other INTRON Dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
2R	18533278	2R_18533278_SNP [dm3] 2R_22645773_SNP [dm6]	G	T	4.403e^-4	0.879	DOWNSTREAM CG30195 INTRON CG2852	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7883041	X_7883041_SNP [dm3] X_7989008_SNP [dm6]	A	C	4.406e^-4	0.879	INTERGENIC
3L	11703438	3L_11703438_SNP [dm3] 3L_11710338_SNP [dm6]	T	C	4.411e^-4	0.879	SYNONYMOUS_CODING mtTFB1 UTR_3_PRIME Ccdc56 DOWNSTREAM crim	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13121240	3L_13121240_SNP [dm3] 3L_13128140_SNP [dm6]	G	A	4.412e^-4	0.879	INTERGENIC
2R	16770898	2R_16770898_SNP [dm3] 2R_20883393_SNP [dm6]	G	C	4.417e^-4	0.879	DOWNSTREAM otp & 1 other INTERGENIC
2L	17393677	2L_17393677_SNP [dm3] 2L_17393677_SNP [dm6]	T	G	4.444e^-4	0.879	INTRON CLIP-190
3R	23451429	3R_23451429_SNP [dm3] 3R_27625707_SNP [dm6]	A	G	4.453e^-4	0.879	SYNONYMOUS_CODING CG5612 INTRON Tusp
2L	6111785	2L_6111785_SNP [dm3] 2L_6111785_SNP [dm6]	A	T	4.461e^-4	0.879	INTRON stai
3R	9340408	3R_9340408_SNP [dm3] 3R_13514686_SNP [dm6]	A	T	4.461e^-4	0.879	INTERGENIC
X	20039568	X_20039568_SNP [dm3] X_20145535_SNP [dm6]	C	T	4.463e^-4	0.879	INTERGENIC
3L	9766385	3L_9766385_SNP [dm3] 3L_9773285_SNP [dm6]	G	C	4.473e^-4	0.879	UPSTREAM CG8177 INTRON CG8177
X	7614815	X_7614815_SNP [dm3] X_7720782_SNP [dm6]	A	G	4.474e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18052463	2R_18052463_SNP [dm3] 2R_22164958_SNP [dm6]	C	T	4.474e^-4	0.879	SYNONYMOUS_CODING a UPSTREAM CG34206
X	20879290	X_20879290_SNP [dm3] X_21008263_SNP [dm6]	G	T	4.475e^-4	0.879	INTERGENIC
3R	23469088	3R_23469088_SNP [dm3] 3R_27643366_SNP [dm6]	A	T	4.477e^-4	0.879	UPSTREAM mir-1001 INTRON tau
X	17511185	X_17511185_SNP [dm3] X_17617152_SNP [dm6]	C	T	4.481e^-4	0.879	INTERGENIC
2L	17566531	2L_17566531_SNP [dm3] 2L_17566531_SNP [dm6]	G	A	4.484e^-4	0.879	DOWNSTREAM mir-124 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2641281	3L_2641281_SNP [dm3] 3L_2641281_SNP [dm6]	T	G	4.487e^-4	0.879	UTR_3_PRIME CG42245 & 1 other DOWNSTREAM CG14949
X	6245018	X_6245018_SNP [dm3] X_6350985_SNP [dm6]	C	T	4.502e^-4	0.879	UPSTREAM CG3446 INTRON kdn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	12369456	3L_12369456_SNP [dm3] 3L_12376356_SNP [dm6]	T	G	4.504e^-4	0.879	INTRON Ncc69
2R	19445685	2R_19445685_SNP [dm3] 2R_23558162_SNP [dm6]	G	C	4.510e^-4	0.879	SYNONYMOUS_CODING ItgalphaPS5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14768734	2L_14768734_SNP [dm3] 2L_14768734_SNP [dm6]	T	G	4.535e^-4	0.879	INTERGENIC
2L	2540876	2L_2540876_SNP [dm3] 2L_2540876_SNP [dm6]	C	T	4.535e^-4	0.879	INTERGENIC
3R	12724236	3R_12724236_SNP [dm3] 3R_16898514_SNP [dm6]	C	T	4.549e^-4	0.879	DOWNSTREAM CR43617 INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	2419699	2L_2419699_SNP [dm3] 2L_2419699_SNP [dm6]	G	A	4.553e^-4	0.879	INTRON CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6917571	3R_6917571_SNP [dm3] 3R_11091849_SNP [dm6]	T	C	4.558e^-4	0.879	INTERGENIC
3L	9814617	3L_9814617_SNP [dm3] 3L_9821517_SNP [dm6]	A	G	4.566e^-4	0.879	UPSTREAM CG43897 INTRON CG43897
3L	1277413	3L_1277413_SNP [dm3] 3L_1277413_SNP [dm6]	G	A	4.574e^-4	0.879	INTRON CG32333
2L	12612516	2L_12612516_SNP [dm3] 2L_12612516_SNP [dm6]	A	C	4.576e^-4	0.879	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	6902276	3R_6902276_SNP [dm3] 3R_11076554_SNP [dm6]	T	A	4.586e^-4	0.879	INTERGENIC
3L	1705825	3L_1705825_SNP [dm3] 3L_1705825_SNP [dm6]	G	T	4.592e^-4	0.879	INTRON CG7991	TF binding site mE1_TFBS_HSA
X	9610264	X_9610264_DEL [dm3] X_9716231_DEL [dm6]	TT	T	4.593e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	7047788	3R_7047788_DEL [dm3] 3R_11222066_DEL [dm6]	CAA	C	4.597e^-4	0.879	UPSTREAM snoRNA:Me18S-C1096 & 2 others DOWNSTREAM CR31144 INTRON RpL3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	20276964	2R_20276964_SNP [dm3] 2R_24389441_SNP [dm6]	G	T	4.608e^-4	0.879	INTRON mAChR-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18834923	3L_18834923_SNP [dm3] 3L_18841823_SNP [dm6]	C	T	4.620e^-4	0.879	UPSTREAM Indy INTRON Indy EXON CR32027	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6734362	X_6734362_SNP [dm3] X_6840329_SNP [dm6]	G	T	4.640e^-4	0.879	INTRON CG14435
2L	4635277	2L_4635277_SNP [dm3] 2L_4635277_SNP [dm6]	A	G	4.640e^-4	0.879	UPSTREAM CR45452 INTERGENIC
3R	7047375	3R_7047375_SNP [dm3] 3R_11221653_SNP [dm6]	A	T	4.640e^-4	0.879	UPSTREAM RpL3 & 2 others DOWNSTREAM CR31144 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3R	7047391	3R_7047391_SNP [dm3] 3R_11221669_SNP [dm6]	C	A	4.640e^-4	0.879	UPSTREAM RpL3 & 2 others DOWNSTREAM CR31144 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3R	22842582	3R_22842582_SNP [dm3] 3R_27016860_SNP [dm6]	C	G	4.641e^-4	0.879	DOWNSTREAM CG17192 INTRON RYa-R
X	6300835	X_6300835_SNP [dm3] X_6406802_SNP [dm6]	C	G	4.643e^-4	0.879	INTERGENIC
X	7693924	X_7693924_SNP [dm3] X_7799891_SNP [dm6]	G	A	4.647e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10509584	2R_10509584_SNP [dm3] 2R_14622079_SNP [dm6]	T	C	4.649e^-4	0.879	UPSTREAM snoRNA:Me28S-C3227a & 5 others DOWNSTREAM snoRNA:Me18S-C1366 INTRON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	14799414	3R_14799414_SNP [dm3] 3R_18973692_SNP [dm6]	T	A	4.653e^-4	0.879	INTRON CG42613 & 1 other	TF binding site mE1_TFBS_Trl
3R	25942816	3R_25942816_DEL [dm3] 3R_30117094_DEL [dm6]	TAAGG	T	4.657e^-4	0.879	INTRON sima
3L	5525091	3L_5525091_SNP [dm3] 3L_5531991_SNP [dm6]	C	T	4.662e^-4	0.879	INTERGENIC
2R	14011887	2R_14011887_SNP [dm3] 2R_18124382_SNP [dm6]	G	A	4.665e^-4	0.879	UPSTREAM stau INTRON stau	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	12616528	2L_12616528_SNP [dm3] 2L_12616528_SNP [dm6]	C	T	4.668e^-4	0.879	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2R	12682717	2R_12682717_SNP [dm3] 2R_16795212_SNP [dm6]	A	T	4.670e^-4	0.879	INTRON CG15615
3R	13599607	3R_13599607_SNP [dm3] 3R_17773885_SNP [dm6]	G	T	4.671e^-4	0.879	SYNONYMOUS_CODING CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3R	13438554	3R_13438554_SNP [dm3] 3R_17612832_SNP [dm6]	T	C	4.673e^-4	0.879	UPSTREAM CG34281 & 1 other INTERGENIC
3R	13438742	3R_13438742_SNP [dm3] 3R_17613020_SNP [dm6]	T	C	4.673e^-4	0.879	NON_SYNONYMOUS_CODING CG34281 UPSTREAM CG14327
3R	13438743	3R_13438743_SNP [dm3] 3R_17613021_SNP [dm6]	G	A	4.673e^-4	0.879	SYNONYMOUS_CODING CG34281 UPSTREAM CG14327
3R	13438962	3R_13438962_SNP [dm3] 3R_17613240_SNP [dm6]	C	T	4.673e^-4	0.879	SYNONYMOUS_CODING CG34281 UPSTREAM CG14327
3R	13439249	3R_13439249_SNP [dm3] 3R_17613527_SNP [dm6]	C	T	4.673e^-4	0.879	UPSTREAM CG14327 DOWNSTREAM CG34281 INTERGENIC
3L	446689	3L_446689_SNP [dm3] 3L_446689_SNP [dm6]	T	A	4.676e^-4	0.879	INTRON klar	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12542470	2L_12542470_SNP [dm3] 2L_12542470_SNP [dm6]	T	G	4.678e^-4	0.879	UPSTREAM CR42746 INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	13234189	X_13234189_SNP [dm3] X_13340156_SNP [dm6]	A	T	4.678e^-4	0.879	UTR_3_PRIME CG15747
3L	12356459	3L_12356459_DEL [dm3] 3L_12363359_DEL [dm6]	GTTGG	G	4.678e^-4	0.879	INTERGENIC
3R	22030503	3R_22030503_DEL [dm3] 3R_26204781_DEL [dm6]	CACAA	C	4.680e^-4	0.879	INTRON CR44320
2R	9526610	2R_9526610_MNP [dm3] 2R_13639105_MNP [dm6]	AAC	CCT	4.681e^-4	0.879	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17588063	2L_17588063_SNP [dm3] 2L_17588063_SNP [dm6]	A	T	4.684e^-4	0.879	DOWNSTREAM CR44411 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3999208	X_3999208_SNP [dm3] X_4105175_SNP [dm6]	G	A	4.686e^-4	0.879	SYNONYMOUS_CODING brn UPSTREAM Xpac & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23207567	3R_23207567_SNP [dm3] 3R_27381845_SNP [dm6]	C	T	4.687e^-4	0.879	UTR_3_PRIME side INTRON side
3L	13930657	3L_13930657_SNP [dm3] 3L_13937557_SNP [dm6]	C	T	4.688e^-4	0.879	INTERGENIC
2R	15889552	2R_15889552_SNP [dm3] 2R_20002047_SNP [dm6]	A	T	4.695e^-4	0.879	INTERGENIC
2R	17793991	2R_17793991_SNP [dm3] 2R_21906486_SNP [dm6]	T	G	4.695e^-4	0.879	INTRON Fili
2R	19447141	2R_19447141_SNP [dm3] 2R_23559618_SNP [dm6]	C	T	4.697e^-4	0.879	NON_SYNONYMOUS_CODING ItgalphaPS5 UPSTREAM Pi3K59F	TF binding site mE1_TFBS_sens
3R	4375368	3R_4375368_SNP [dm3] 3R_8549646_SNP [dm6]	A	T	4.704e^-4	0.879	INTERGENIC
2R	10007632	2R_10007632_SNP [dm3] 2R_14120127_SNP [dm6]	T	A	4.706e^-4	0.879	INTRON Prosap	TF binding site mE1_TFBS_HSA
3L	7177168	3L_7177168_SNP [dm3] 3L_7184068_SNP [dm6]	T	C	4.706e^-4	0.879	INTRON Dscam2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15767689	3L_15767689_SNP [dm3] 3L_15774589_SNP [dm6]	A	G	4.722e^-4	0.879	INTERGENIC
3L	14205857	3L_14205857_SNP [dm3] 3L_14212757_SNP [dm6]	C	G	4.726e^-4	0.879	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3R	6191935	3R_6191935_SNP [dm3] 3R_10366213_SNP [dm6]	G	T	4.733e^-4	0.879	INTRON Rfx	TF binding site mE1_TFBS_cad
3R	14627285	3R_14627285_SNP [dm3] 3R_18801563_SNP [dm6]	C	T	4.737e^-4	0.879	UTR_3_PRIME CG18208
2L	14723220	2L_14723220_SNP [dm3] 2L_14723220_SNP [dm6]	T	A	4.737e^-4	0.879	INTERGENIC
X	7902574	X_7902574_SNP [dm3] X_8008541_SNP [dm6]	C	T	4.739e^-4	0.879	INTRON Tbh

By genomic position
Variant impact
Gene name

FP phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results