DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.765e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.06702

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1885 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	17347546	2R_17347546_SNP [dm3] 2R_21460041_SNP [dm6]	G	A	3.757e^-6	0.894	INTRON Sdc
2L	18438982	2L_18438982_SNP [dm3] 2L_18438982_SNP [dm6]	G	A	4.417e^-6	0.894	INTERGENIC
3R	22279691	3R_22279691_SNP [dm3] 3R_26453969_SNP [dm6]	C	T	4.524e^-6	0.894	UPSTREAM CG43117 INTRON CG5447
2R	13782100	2R_13782100_SNP [dm3] 2R_17894595_SNP [dm6]	A	T	4.584e^-6	0.894	UPSTREAM CG14491 & 1 other INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	723422	3L_723422_DEL [dm3] 3L_723422_DEL [dm6]	AGT	TC	5.102e^-6	0.894	INTERGENIC
2L	15835955	2L_15835955_SNP [dm3] 2L_15835955_SNP [dm6]	G	A	5.366e^-6	0.894	UPSTREAM CG18518 DOWNSTREAM CR31822 INTERGENIC
2L	15835953	2L_15835953_SNP [dm3] 2L_15835953_SNP [dm6]	C	T	5.534e^-6	0.894	UPSTREAM CG18518 DOWNSTREAM CR31822 INTERGENIC
2L	15835967	2L_15835967_SNP [dm3] 2L_15835967_SNP [dm6]	A	C	5.534e^-6	0.894	UPSTREAM CG18518 DOWNSTREAM CR31822 INTERGENIC
2L	1094208	2L_1094208_SNP [dm3] 2L_1094208_SNP [dm6]	G	T	5.548e^-6	0.894	INTRON CG4629
2L	12133058	2L_12133058_SNP [dm3] 2L_12133058_SNP [dm6]	G	C	6.164e^-6	0.894	INTRON rho-6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15835962	2L_15835962_SNP [dm3] 2L_15835962_SNP [dm6]	T	C	6.543e^-6	0.894	UPSTREAM CG18518 DOWNSTREAM CR31822 INTERGENIC
2L	7671355	2L_7671355_SNP [dm3] 2L_7671355_SNP [dm6]	G	C	7.639e^-6	0.894	INTRON Slob & 1 other
2L	15837656	2L_15837656_DEL [dm3] 2L_15837656_DEL [dm6]	CTGTGGAGA	C	7.688e^-6	0.894	UPSTREAM CR31822 INTERGENIC
2L	16797261	2L_16797261_SNP [dm3] 2L_16797261_SNP [dm6]	G	T	8.258e^-6	0.894	NON_SYNONYMOUS_CODING Ugt36Bb	TF binding site mE1_TFBS_sens
2L	1094117	2L_1094117_SNP [dm3] 2L_1094117_SNP [dm6]	C	T	8.552e^-6	0.894	INTRON CG4629
2L	7673232	2L_7673232_SNP [dm3] 2L_7673232_SNP [dm6]	A	G	9.219e^-6	0.894	INTRON Slob & 1 other
3L	1866267	3L_1866267_SNP [dm3] 3L_1866267_SNP [dm6]	T	A	9.588e^-6	0.894	INTRON CG12025	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	3408950	3R_3408950_SNP [dm3] 3R_7583228_SNP [dm6]	A	C	1.003e^-5	0.894	INTRON CG34127
2L	2612034	2L_2612034_SNP [dm3] 2L_2612034_SNP [dm6]	G	C	1.038e^-5	0.894	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4661225	2R_4661225_SNP [dm3] 2R_8773720_SNP [dm6]	A	T	1.188e^-5	0.894	INTERGENIC
X	17025680	X_17025680_SNP [dm3] X_17131647_SNP [dm6]	G	T	1.206e^-5	0.894	INTRON CG5004
2R	1179199	2R_1179199_SNP [dm3] 2R_5291694_SNP [dm6]	C	A	1.217e^-5	0.894	INTRON d4	transposable element FlyBase
2L	9272908	2L_9272908_SNP [dm3] 2L_9272908_SNP [dm6]	G	A	1.294e^-5	0.894	INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
2L	9272983	2L_9272983_SNP [dm3] 2L_9272983_SNP [dm6]	T	A	1.294e^-5	0.894	INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
2L	2612016	2L_2612016_SNP [dm3] 2L_2612016_SNP [dm6]	A	G	1.311e^-5	0.894	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2612033	2L_2612033_SNP [dm3] 2L_2612033_SNP [dm6]	T	A	1.311e^-5	0.894	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2611942	2L_2611942_SNP [dm3] 2L_2611942_SNP [dm6]	A	T	1.361e^-5	0.894	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7671459	2L_7671459_SNP [dm3] 2L_7671459_SNP [dm6]	T	C	1.409e^-5	0.894	INTRON Slob & 1 other
3L	9248790	3L_9248790_SNP [dm3] 3L_9255690_SNP [dm6]	T	A	1.481e^-5	0.894	INTRON GluRIB
3L	9248812	3L_9248812_SNP [dm3] 3L_9255712_SNP [dm6]	A	G	1.481e^-5	0.894	INTRON GluRIB
2R	8308944	2R_8308944_SNP [dm3] 2R_12421439_SNP [dm6]	G	A	1.534e^-5	0.894	SYNONYMOUS_CODING CG8834	TF binding site mE1_TFBS_cad
3L	1866320	3L_1866320_SNP [dm3] 3L_1866320_SNP [dm6]	T	C	1.718e^-5	0.894	INTRON CG12025	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	13370427	3L_13370427_SNP [dm3] 3L_13377327_SNP [dm6]	C	T	1.741e^-5	0.894	UPSTREAM CG14111 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	17347548	2R_17347548_SNP [dm3] 2R_21460043_SNP [dm6]	T	G	1.808e^-5	0.894	INTRON Sdc
X	3984887	X_3984887_SNP [dm3] X_4090854_SNP [dm6]	T	A	1.815e^-5	0.894	UTR_3_PRIME CG43689 DOWNSTREAM CG43689	TF binding site mE1_TFBS_cad
2L	2612017	2L_2612017_SNP [dm3] 2L_2612017_SNP [dm6]	A	C	1.818e^-5	0.894	DOWNSTREAM CG15395 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20146803	2L_20146803_SNP [dm3] 2L_20146803_SNP [dm6]	T	A	1.829e^-5	0.894	INTERGENIC
3L	10822338	3L_10822338_SNP [dm3] 3L_10829238_SNP [dm6]	T	G	1.848e^-5	0.894	INTERGENIC
2R	8309297	2R_8309297_SNP [dm3] 2R_12421792_SNP [dm6]	G	A	1.864e^-5	0.894	INTRON CG8834	TF binding site mE1_TFBS_cad
3L	2938083	3L_2938083_SNP [dm3] 3L_2938083_SNP [dm6]	C	T	1.939e^-5	0.907	INTRON Shab
2R	4161144	2R_4161144_SNP [dm3] 2R_8273639_SNP [dm6]	A	T	2.088e^-5	0.927	INTERGENIC
2R	8308950	2R_8308950_SNP [dm3] 2R_12421445_SNP [dm6]	G	A	2.166e^-5	0.927	SYNONYMOUS_CODING CG8834	TF binding site mE1_TFBS_cad
3L	13370514	3L_13370514_SNP [dm3] 3L_13377414_SNP [dm6]	G	A	2.178e^-5	0.927	UPSTREAM CG14111 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	1094207	2L_1094207_SNP [dm3] 2L_1094207_SNP [dm6]	T	A	2.181e^-5	0.927	INTRON CG4629
3L	2937979	3L_2937979_SNP [dm3] 3L_2937979_SNP [dm6]	C	T	2.557e^-5	0.966	INTRON Shab
2R	15390051	2R_15390051_SNP [dm3] 2R_19502546_SNP [dm6]	A	G	2.685e^-5	0.966	UPSTREAM CG11007 INTERGENIC
2L	7671918	2L_7671918_SNP [dm3] 2L_7671918_SNP [dm6]	T	C	2.766e^-5	0.966	INTRON Slob & 1 other
2L	734294	2L_734294_SNP [dm3] 2L_734294_SNP [dm6]	A	G	2.810e^-5	0.966	INTERGENIC
2R	9558416	2R_9558416_SNP [dm3] 2R_13670911_SNP [dm6]	T	C	2.824e^-5	0.966	SYNONYMOUS_CODING CG18368 DOWNSTREAM CR45031 INTRON fas
2R	5523689	2R_5523689_SNP [dm3] 2R_9636184_SNP [dm6]	C	A	2.839e^-5	0.966	DOWNSTREAM CR44070 INTRON Mmp2
2L	7779244	2L_7779244_SNP [dm3] 2L_7779244_SNP [dm6]	C	G	2.871e^-5	0.966	UPSTREAM Uro INTERGENIC
2L	9271018	2L_9271018_INS [dm3] 2L_9271018_INS [dm6]	T	TT	3.069e^-5	0.966	INTRON Ggamma30A	TF binding site mE1_TFBS_HSA
2L	1365901	2L_1365901_SNP [dm3] 2L_1365901_SNP [dm6]	T	C	3.070e^-5	0.966	INTERGENIC
3L	1867021	3L_1867021_SNP [dm3] 3L_1867021_SNP [dm6]	T	G	3.118e^-5	0.966	INTRON CG12025	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	13282598	3L_13282598_SNP [dm3] 3L_13289498_SNP [dm6]	G	T	3.141e^-5	0.966	INTERGENIC
2L	3670683	2L_3670683_SNP [dm3] 2L_3670683_SNP [dm6]	G	A	3.239e^-5	0.966	UPSTREAM Sfp24Bb & 1 other INTRON CG34340
2L	12134290	2L_12134290_SNP [dm3] 2L_12134290_SNP [dm6]	T	G	3.373e^-5	0.966	UPSTREAM rho-6 INTERGENIC
2R	19404101	2R_19404101_SNP [dm3] 2R_23516578_SNP [dm6]	C	G	3.438e^-5	0.966	INTERGENIC
X	14378295	X_14378295_SNP [dm3] X_14484262_SNP [dm6]	C	T	3.447e^-5	0.966	INTERGENIC
3L	9225504	3L_9225504_SNP [dm3] 3L_9232404_SNP [dm6]	A	G	3.473e^-5	0.966	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1093321	2L_1093321_SNP [dm3] 2L_1093321_SNP [dm6]	A	G	3.500e^-5	0.966	INTRON CG4629
3L	1866871	3L_1866871_SNP [dm3] 3L_1866871_SNP [dm6]	T	A	3.519e^-5	0.966	INTRON CG12025	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1093320	2L_1093320_SNP [dm3] 2L_1093320_SNP [dm6]	C	T	3.531e^-5	0.966	INTRON CG4629
2R	19144240	2R_19144240_SNP [dm3] 2R_23256717_SNP [dm6]	G	A	3.554e^-5	0.966	INTERGENIC
X	10058312	X_10058312_SNP [dm3] X_10164279_SNP [dm6]	A	G	3.594e^-5	0.966	INTRON CR44894 & 1 other
2R	3921028	2R_3921028_SNP [dm3] 2R_8033523_SNP [dm6]	T	C	3.773e^-5	0.966	INTRON Optix
2L	7654316	2L_7654316_SNP [dm3] 2L_7654316_SNP [dm6]	C	G	3.852e^-5	0.966	INTRON Slob
2L	7654319	2L_7654319_INS [dm3] 2L_7654319_INS [dm6]	C	GATAAGT	3.852e^-5	0.966	INTRON Slob
2L	7654322	2L_7654322_SNP [dm3] 2L_7654322_SNP [dm6]	C	A	3.852e^-5	0.966	INTRON Slob
2L	12134104	2L_12134104_SNP [dm3] 2L_12134104_SNP [dm6]	A	C	3.889e^-5	0.966	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6732478	2R_6732478_SNP [dm3] 2R_10844973_SNP [dm6]	T	A	4.046e^-5	0.966	UPSTREAM CG30015 INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15835782	2L_15835782_SNP [dm3] 2L_15835782_SNP [dm6]	A	G	4.175e^-5	0.966	UPSTREAM CG18518 DOWNSTREAM CR31822 INTERGENIC
2L	7671257	2L_7671257_SNP [dm3] 2L_7671257_SNP [dm6]	A	G	4.278e^-5	0.966	INTRON Slob & 1 other
2L	20229722	2L_20229722_SNP [dm3] 2L_20229722_SNP [dm6]	C	T	4.350e^-5	0.966	INTERGENIC
2R	6773704	2R_6773704_SNP [dm3] 2R_10886199_SNP [dm6]	G	A	4.381e^-5	0.966	UPSTREAM CG30020 DOWNSTREAM mir-1008 INTRON CG18004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	16805633	2L_16805633_SNP [dm3] 2L_16805633_SNP [dm6]	T	G	4.430e^-5	0.966	INTRON CG13280 & 1 other
2L	7780034	2L_7780034_SNP [dm3] 2L_7780034_SNP [dm6]	T	C	4.496e^-5	0.966	UPSTREAM Uro INTERGENIC
2L	15837667	2L_15837667_SNP [dm3] 2L_15837667_SNP [dm6]	A	G	4.543e^-5	0.966	UPSTREAM CR31822 INTERGENIC
2L	15837669	2L_15837669_DEL [dm3] 2L_15837669_DEL [dm6]	AT	A	4.543e^-5	0.966	UPSTREAM CR31822 INTERGENIC
2L	16802836	2L_16802836_SNP [dm3] 2L_16802836_SNP [dm6]	G	A	4.557e^-5	0.966	SYNONYMOUS_CODING CG13280	TF binding site mE1_TFBS_chinmo
3L	13367397	3L_13367397_DEL [dm3] 3L_13374297_DEL [dm6]	ACAGGTTTTTCCCACTTTTG...	A	4.638e^-5	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7671796	2L_7671796_SNP [dm3] 2L_7671796_SNP [dm6]	G	A	4.667e^-5	0.966	INTRON Slob & 1 other
2R	15383318	2R_15383318_SNP [dm3] 2R_19495813_SNP [dm6]	A	G	4.667e^-5	0.966	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22456463	3R_22456463_SNP [dm3] 3R_26630741_SNP [dm6]	C	G	4.764e^-5	0.966	SYNONYMOUS_CODING TwdlJ	TF binding site mE1_TFBS_chinmo
3R	13425689	3R_13425689_SNP [dm3] 3R_17599967_SNP [dm6]	T	G	4.774e^-5	0.966	INTERGENIC
2R	19144239	2R_19144239_SNP [dm3] 2R_23256716_SNP [dm6]	A	C	4.804e^-5	0.966	INTERGENIC
2R	15383819	2R_15383819_SNP [dm3] 2R_19496314_SNP [dm6]	A	T	5.022e^-5	0.966	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17077478	2L_17077478_SNP [dm3] 2L_17077478_SNP [dm6]	T	A	5.048e^-5	0.966	INTERGENIC
2R	15389964	2R_15389964_SNP [dm3] 2R_19502459_SNP [dm6]	T	C	5.049e^-5	0.966	UPSTREAM CG11007 INTERGENIC
2L	13543760	2L_13543760_SNP [dm3] 2L_13543760_SNP [dm6]	G	A	5.235e^-5	0.966	DOWNSTREAM CG16853 INTRON B4	transposable element FlyBase
2R	10539113	2R_10539113_SNP [dm3] 2R_14651608_SNP [dm6]	A	G	5.326e^-5	0.966	INTERGENIC
2R	8307699	2R_8307699_SNP [dm3] 2R_12420194_SNP [dm6]	T	C	5.333e^-5	0.966	UPSTREAM CG42782 DOWNSTREAM CG8834 INTRON CG8834
2R	8309803	2R_8309803_SNP [dm3] 2R_12422298_SNP [dm6]	A	C	5.333e^-5	0.966	UPSTREAM CG8520 INTRON CG8834	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15835747	2L_15835747_SNP [dm3] 2L_15835747_SNP [dm6]	G	A	5.344e^-5	0.966	UPSTREAM CG18518 DOWNSTREAM CR31822 INTERGENIC
3L	13367367	3L_13367367_SNP [dm3] 3L_13374267_SNP [dm6]	A	C	5.357e^-5	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6011825	2L_6011825_SNP [dm3] 2L_6011825_SNP [dm6]	G	A	5.402e^-5	0.966	SYNONYMOUS_CODING CG9098 START_GAINED CG9098 UTR_5_PRIME CG9098 UPSTREAM CG9098	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6773710	2R_6773710_SNP [dm3] 2R_10886205_SNP [dm6]	T	C	5.459e^-5	0.966	UPSTREAM CG30020 DOWNSTREAM mir-1008 INTRON CG18004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	513391	3L_513391_SNP [dm3] 3L_513391_SNP [dm6]	T	A	5.496e^-5	0.966	INTRON klar
2R	8282022	2R_8282022_SNP [dm3] 2R_12394517_SNP [dm6]	G	T	5.510e^-5	0.966	NON_SYNONYMOUS_CODING Or49a SPLICE_SITE_REGION Or49a UPSTREAM CG30048
2L	1789815	2L_1789815_SNP [dm3] 2L_1789815_SNP [dm6]	C	T	5.535e^-5	0.966	NON_SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7780044	2L_7780044_SNP [dm3] 2L_7780044_SNP [dm6]	G	A	5.626e^-5	0.966	UPSTREAM Uro INTERGENIC
3L	13382889	3L_13382889_SNP [dm3] 3L_13389789_SNP [dm6]	G	A	5.661e^-5	0.966	SYNONYMOUS_CODING Poc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	5238151	2R_5238151_SNP [dm3] 2R_9350646_SNP [dm6]	G	A	5.707e^-5	0.966	INTRON CG13954 & 1 other
2L	12134218	2L_12134218_SNP [dm3] 2L_12134218_SNP [dm6]	G	A	5.726e^-5	0.966	UPSTREAM rho-6 INTERGENIC
2R	19240952	2R_19240952_SNP [dm3] 2R_23353429_SNP [dm6]	A	C	5.737e^-5	0.966	UPSTREAM CG30409 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10706453	2R_10706453_SNP [dm3] 2R_14818948_SNP [dm6]	C	T	5.738e^-5	0.966	INTRON CG10202	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10539130	2R_10539130_SNP [dm3] 2R_14651625_SNP [dm6]	C	T	5.752e^-5	0.966	INTERGENIC
3L	13282692	3L_13282692_SNP [dm3] 3L_13289592_SNP [dm6]	T	C	5.851e^-5	0.966	INTERGENIC
X	2602978	X_2602978_SNP [dm3] X_2708945_SNP [dm6]	C	A	5.893e^-5	0.966	UTR_5_PRIME CG2681	TF binding site mE1_TFBS_chinmo
3L	14155142	3L_14155142_SNP [dm3] 3L_14162042_SNP [dm6]	A	T	5.990e^-5	0.966	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	12134208	2L_12134208_DEL [dm3] 2L_12134208_DEL [dm6]	ACAAAA	A	6.053e^-5	0.966	UPSTREAM rho-6 INTERGENIC
2L	1790540	2L_1790540_SNP [dm3] 2L_1790540_SNP [dm6]	C	T	6.061e^-5	0.966	UPSTREAM Gr22d DOWNSTREAM Gr22c INTERGENIC
2L	16798047	2L_16798047_SNP [dm3] 2L_16798047_SNP [dm6]	A	T	6.109e^-5	0.966	NON_SYNONYMOUS_CODING Ugt36Bb UPSTREAM Ugt36Bc
3L	13370164	3L_13370164_SNP [dm3] 3L_13377064_SNP [dm6]	T	C	6.341e^-5	0.966	UPSTREAM CG14111 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15835673	2L_15835673_SNP [dm3] 2L_15835673_SNP [dm6]	A	G	6.440e^-5	0.966	UPSTREAM CG18518 INTERGENIC
3L	14889722	3L_14889722_SNP [dm3] 3L_14896622_SNP [dm6]	G	A	6.679e^-5	0.966	INTERGENIC
3R	10036003	3R_10036003_SNP [dm3] 3R_14210281_SNP [dm6]	C	T	6.773e^-5	0.966	INTRON Dop1R1
2L	1790863	2L_1790863_SNP [dm3] 2L_1790863_SNP [dm6]	C	T	6.795e^-5	0.966	NON_SYNONYMOUS_CODING Gr22c UPSTREAM Gr22d
3R	3625637	3R_3625637_SNP [dm3] 3R_7799915_SNP [dm6]	G	A	6.824e^-5	0.966	SYNONYMOUS_CODING CG3014
2L	3322948	2L_3322948_SNP [dm3] 2L_3322948_SNP [dm6]	G	T	6.852e^-5	0.966	NON_SYNONYMOUS_CODING CG8837	TF binding site mE1_TFBS_cad
2R	10445660	2R_10445660_SNP [dm3] 2R_14558155_SNP [dm6]	C	T	6.867e^-5	0.966	INTRON ttv
3L	13369279	3L_13369279_SNP [dm3] 3L_13376179_SNP [dm6]	C	T	6.894e^-5	0.966	INTERGENIC
3L	13370474	3L_13370474_SNP [dm3] 3L_13377374_SNP [dm6]	C	A	6.894e^-5	0.966	UPSTREAM CG14111 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	1866799	3L_1866799_INS [dm3] 3L_1866799_INS [dm6]	C	CAGGGTG	6.981e^-5	0.966	INTRON CG12025	TF binding site mE1_TFBS_cad
3L	1866818	3L_1866818_SNP [dm3] 3L_1866818_SNP [dm6]	A	G	6.981e^-5	0.966	INTRON CG12025	TF binding site mE1_TFBS_cad
2R	16756126	2R_16756126_SNP [dm3] 2R_20868621_SNP [dm6]	T	G	6.999e^-5	0.966	UTR_3_PRIME IM4 DOWNSTREAM IM4
3R	22416656	3R_22416656_SNP [dm3] 3R_26590934_SNP [dm6]	G	C	7.384e^-5	0.966	INTRON scrib
X	4765505	X_4765505_INS [dm3] X_4871472_INS [dm6]	A	ATT	7.498e^-5	0.966	INTRON CG42594
2R	16706850	2R_16706850_SNP [dm3] 2R_20819345_SNP [dm6]	A	C	7.526e^-5	0.966	INTERGENIC
2L	22065380	2L_22065380_SNP [dm3] 2L_22065380_SNP [dm6]	C	T	7.535e^-5	0.966	UPSTREAM CG42597 INTERGENIC
3L	13545548	3L_13545548_SNP [dm3] 3L_13552448_SNP [dm6]	A	T	7.554e^-5	0.966	INTRON bru-3
2L	11924209	2L_11924209_SNP [dm3] 2L_11924209_SNP [dm6]	G	T	7.570e^-5	0.966	INTRON Pde1c
2R	2076969	2R_2076969_SNP [dm3] 2R_6189464_SNP [dm6]	T	G	7.618e^-5	0.966	UPSTREAM tRNA:N5:42Ad DOWNSTREAM tRNA:N5:42Ae INTRON Ptr	TF binding site BDTNP1_TFBS_dl
2L	8078848	2L_8078848_SNP [dm3] 2L_8078848_SNP [dm6]	A	G	7.649e^-5	0.966	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_sens
2R	19991045	2R_19991045_SNP [dm3] 2R_24103522_SNP [dm6]	A	T	7.677e^-5	0.966	NON_SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15834564	2L_15834564_SNP [dm3] 2L_15834564_SNP [dm6]	T	G	7.722e^-5	0.966	UPSTREAM CR45368 DOWNSTREAM CG18518 INTERGENIC
3L	7112802	3L_7112802_SNP [dm3] 3L_7119702_SNP [dm6]	C	T	7.783e^-5	0.966	INTRON form3	TF binding site mE1_TFBS_cad
2L	12133315	2L_12133315_INS [dm3] 2L_12133315_INS [dm6]	C	CGGCACTGGCACC...	7.791e^-5	0.966	CODON_INSERTION rho-6	insulator Insulator_Class_II.mE01 Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	17021547	2R_17021547_SNP [dm3] 2R_21134042_SNP [dm6]	A	G	7.890e^-5	0.966	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5252762	2R_5252762_SNP [dm3] 2R_9365257_SNP [dm6]	C	T	7.901e^-5	0.966	INTRON CG13954
2L	2598924	2L_2598924_SNP [dm3] 2L_2598924_SNP [dm6]	C	T	7.966e^-5	0.966	EXON CR44790
2R	6773728	2R_6773728_SNP [dm3] 2R_10886223_SNP [dm6]	A	G	7.966e^-5	0.966	SYNONYMOUS_CODING CG18004 UPSTREAM CG30020 DOWNSTREAM mir-1008	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	17085238	2R_17085238_SNP [dm3] 2R_21197733_SNP [dm6]	G	T	8.058e^-5	0.966	SYNONYMOUS_CODING Lapsyn
3R	22456340	3R_22456340_SNP [dm3] 3R_26630618_SNP [dm6]	T	C	8.167e^-5	0.966	SYNONYMOUS_CODING TwdlJ	TF binding site mE1_TFBS_chinmo
2R	15382028	2R_15382028_SNP [dm3] 2R_19494523_SNP [dm6]	C	T	8.587e^-5	0.966	UTR_3_PRIME hpo DOWNSTREAM Rep
3R	23286169	3R_23286169_SNP [dm3] 3R_27460447_SNP [dm6]	C	A	8.611e^-5	0.966	INTERGENIC
3R	12248331	3R_12248331_SNP [dm3] 3R_16422609_SNP [dm6]	A	C	8.760e^-5	0.966	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
2L	19380710	2L_19380710_SNP [dm3] 2L_19380710_SNP [dm6]	T	A	8.791e^-5	0.966	UPSTREAM CG17350 INTERGENIC
2L	12163227	2L_12163227_INS [dm3] 2L_12163227_INS [dm6]	T	TAAGAAATT	8.792e^-5	0.966	DOWNSTREAM CG31861 INTRON CG31760
2L	15730925	2L_15730925_INS [dm3] 2L_15730925_INS [dm6]	A	AA	8.842e^-5	0.966	INTRON CycE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	1866710	3L_1866710_SNP [dm3] 3L_1866710_SNP [dm6]	C	A	8.941e^-5	0.966	INTRON CG12025	TF binding site mE1_TFBS_cad
2L	16797649	2L_16797649_SNP [dm3] 2L_16797649_SNP [dm6]	G	A	9.121e^-5	0.966	SYNONYMOUS_CODING Ugt36Bb	TF binding site mE1_TFBS_sens
2L	7671885	2L_7671885_DEL [dm3] 2L_7671885_DEL [dm6]	AGAA	A	9.149e^-5	0.966	INTRON Slob & 1 other
2L	19822209	2L_19822209_SNP [dm3] 2L_19822209_SNP [dm6]	C	A	9.151e^-5	0.966	INTRON sick
2R	16216724	2R_16216724_SNP [dm3] 2R_20329219_SNP [dm6]	G	A	9.292e^-5	0.966	INTRON CG8929	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12135120	2L_12135120_SNP [dm3] 2L_12135120_SNP [dm6]	T	C	9.327e^-5	0.966	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	19380713	2L_19380713_SNP [dm3] 2L_19380713_SNP [dm6]	C	T	9.352e^-5	0.966	UPSTREAM CG17350 INTERGENIC
X	22047973	X_22047973_SNP [dm3] X_22646137_SNP [dm6]	A	C	9.360e^-5	0.966	INTERGENIC
2L	12463472	2L_12463472_SNP [dm3] 2L_12463472_SNP [dm6]	A	C	9.415e^-5	0.966	INTRON bun
2L	8765550	2L_8765550_SNP [dm3] 2L_8765550_SNP [dm6]	A	G	9.537e^-5	0.966	SYNONYMOUS_CODING CG9463
3L	13368285	3L_13368285_SNP [dm3] 3L_13375185_SNP [dm6]	C	T	9.603e^-5	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20454745	X_20454745_SNP [dm3] X_20583718_SNP [dm6]	A	G	9.653e^-5	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16707664	2R_16707664_SNP [dm3] 2R_20820159_SNP [dm6]	C	T	9.674e^-5	0.966	INTERGENIC
3R	25238388	3R_25238388_SNP [dm3] 3R_29412666_SNP [dm6]	C	A	9.707e^-5	0.966	INTRON Ptp99A
2R	5523226	2R_5523226_SNP [dm3] 2R_9635721_SNP [dm6]	C	G	9.769e^-5	0.966	INTRON Mmp2
3L	18129962	3L_18129962_SNP [dm3] 3L_18136862_SNP [dm6]	A	G	9.774e^-5	0.966	UPSTREAM CR44669 INTERGENIC
2R	16707485	2R_16707485_SNP [dm3] 2R_20819980_SNP [dm6]	G	A	9.786e^-5	0.966	INTERGENIC
2R	5524269	2R_5524269_SNP [dm3] 2R_9636764_SNP [dm6]	G	C	9.886e^-5	0.966	DOWNSTREAM CR44070 INTRON Mmp2
2L	7278345	2L_7278345_SNP [dm3] 2L_7278345_SNP [dm6]	C	A	9.894e^-5	0.966	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6095115	3L_6095115_SNP [dm3] 3L_6102015_SNP [dm6]	A	G	9.979e^-5	0.966	INTRON Ets65A
X	7706764	X_7706764_SNP [dm3] X_7812731_SNP [dm6]	A	G	9.979e^-5	0.966	INTERGENIC
2L	10012772	2L_10012772_SNP [dm3] 2L_10012772_SNP [dm6]	T	G	1.009e^-4	0.966	UTR_3_PRIME Trp1 DOWNSTREAM Trp1 & 1 other
2L	7668325	2L_7668325_SNP [dm3] 2L_7668325_SNP [dm6]	A	G	1.012e^-4	0.966	INTRON Slob & 1 other
3R	12248315	3R_12248315_SNP [dm3] 3R_16422593_SNP [dm6]	C	T	1.033e^-4	0.966	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
3R	18656599	3R_18656599_SNP [dm3] 3R_22830877_SNP [dm6]	C	A	1.040e^-4	0.966	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15382091	2R_15382091_SNP [dm3] 2R_19494586_SNP [dm6]	T	A	1.065e^-4	0.966	UTR_3_PRIME hpo DOWNSTREAM Rep	TF binding site mE1_TFBS_cad
2R	6773118	2R_6773118_SNP [dm3] 2R_10885613_SNP [dm6]	A	G	1.069e^-4	0.966	SYNONYMOUS_CODING CG18004 DOWNSTREAM CG18003 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7671158	2L_7671158_SNP [dm3] 2L_7671158_SNP [dm6]	A	T	1.071e^-4	0.966	INTRON Slob & 1 other
3L	13368224	3L_13368224_SNP [dm3] 3L_13375124_SNP [dm6]	A	G	1.086e^-4	0.966	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	7960921	3R_7960921_SNP [dm3] 3R_12135199_SNP [dm6]	C	G	1.088e^-4	0.966	INTERGENIC
2R	5253290	2R_5253290_SNP [dm3] 2R_9365785_SNP [dm6]	G	C	1.092e^-4	0.966	INTRON CG13954	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9755266	3R_9755266_SNP [dm3] 3R_13929544_SNP [dm6]	T	A	1.093e^-4	0.966	INTERGENIC
2L	7674753	2L_7674753_SNP [dm3] 2L_7674753_SNP [dm6]	C	G	1.106e^-4	0.966	UTR_5_PRIME Slob INTRON Myo28B1
2R	14534075	2R_14534075_SNP [dm3] 2R_18646570_SNP [dm6]	A	G	1.107e^-4	0.966	INTRON SP2637
2R	14534088	2R_14534088_SNP [dm3] 2R_18646583_SNP [dm6]	T	C	1.107e^-4	0.966	INTRON SP2637
2L	18885287	2L_18885287_SNP [dm3] 2L_18885287_SNP [dm6]	T	C	1.108e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	5451070	2R_5451070_SNP [dm3] 2R_9563565_SNP [dm6]	A	C	1.120e^-4	0.966	NON_SYNONYMOUS_CODING CG1809 EXON CR45281	TF binding site mE1_TFBS_cad
3R	3625721	3R_3625721_SNP [dm3] 3R_7799999_SNP [dm6]	T	C	1.121e^-4	0.966	INTRON CG3014
3R	3414129	3R_3414129_SNP [dm3] 3R_7588407_SNP [dm6]	G	C	1.122e^-4	0.966	INTRON CG34127
3R	24066366	3R_24066366_SNP [dm3] 3R_28240644_SNP [dm6]	A	T	1.126e^-4	0.966	DOWNSTREAM CG34354 INTERGENIC
2L	7671433	2L_7671433_DEL [dm3] 2L_7671433_DEL [dm6]	CC	C	1.134e^-4	0.966	INTRON Slob & 1 other
3L	1588825	3L_1588825_DEL [dm3] 3L_1588825_DEL [dm6]	AA	A	1.135e^-4	0.966	UTR_5_PRIME CG13917 INTRON CG13917
2L	7779788	2L_7779788_DEL [dm3] 2L_7779788_DEL [dm6]	TTGCA	T	1.136e^-4	0.966	UPSTREAM Uro INTERGENIC
3R	22248537	3R_22248537_SNP [dm3] 3R_26422815_SNP [dm6]	T	A	1.139e^-4	0.966	INTERGENIC
3L	6620482	3L_6620482_SNP [dm3] 3L_6627382_SNP [dm6]	G	A	1.147e^-4	0.966	INTRON GluRIA
2L	4275308	2L_4275308_SNP [dm3] 2L_4275308_SNP [dm6]	A	G	1.147e^-4	0.966	INTERGENIC
2R	16459156	2R_16459156_SNP [dm3] 2R_20571651_SNP [dm6]	T	C	1.148e^-4	0.966	INTRON qsm
3L	7812578	3L_7812578_SNP [dm3] 3L_7819478_SNP [dm6]	A	T	1.149e^-4	0.966	INTRON Pdp1
X	16902175	X_16902175_SNP [dm3] X_17008142_SNP [dm6]	C	T	1.150e^-4	0.966	INTRON CG45002
3R	25319958	3R_25319958_SNP [dm3] 3R_29494236_SNP [dm6]	T	C	1.161e^-4	0.966	UTR_3_PRIME Diedel UPSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	16902151	X_16902151_SNP [dm3] X_17008118_SNP [dm6]	G	A	1.173e^-4	0.966	INTRON CG45002
3R	26382257	3R_26382257_SNP [dm3] 3R_30556535_SNP [dm6]	T	G	1.175e^-4	0.966	UTR_3_PRIME CG34155 INTRON tmod	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	8079064	2L_8079064_SNP [dm3] 2L_8079064_SNP [dm6]	A	T	1.176e^-4	0.966	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_sens
2L	8079070	2L_8079070_SNP [dm3] 2L_8079070_SNP [dm6]	G	A	1.176e^-4	0.966	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_sens
2L	8079076	2L_8079076_SNP [dm3] 2L_8079076_SNP [dm6]	G	T	1.176e^-4	0.966	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_sens
3L	10364116	3L_10364116_INS [dm3] 3L_10371016_INS [dm6]	T	TG	1.177e^-4	0.966	INTERGENIC
3L	10364122	3L_10364122_INS [dm3] 3L_10371022_INS [dm6]	T	TT	1.177e^-4	0.966	INTERGENIC
3L	10364125	3L_10364125_SNP [dm3] 3L_10371025_SNP [dm6]	A	G	1.177e^-4	0.966	INTERGENIC
3L	10364130	3L_10364130_SNP [dm3] 3L_10371030_SNP [dm6]	A	C	1.177e^-4	0.966	INTERGENIC
3R	26464893	3R_26464893_DEL [dm3] 3R_30639171_DEL [dm6]	TGAAATTGTT	T	1.189e^-4	0.966	INTERGENIC
3R	26464924	3R_26464924_SNP [dm3] 3R_30639202_SNP [dm6]	A	T	1.189e^-4	0.966	INTERGENIC
2L	11852990	2L_11852990_SNP [dm3] 2L_11852990_SNP [dm6]	G	A	1.191e^-4	0.966	UPSTREAM CG42751 DOWNSTREAM Mal-B2 INTRON Pde1c
3L	17923659	3L_17923659_SNP [dm3] 3L_17930559_SNP [dm6]	C	A	1.191e^-4	0.966	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	20232328	2L_20232328_SNP [dm3] 2L_20232328_SNP [dm6]	T	C	1.195e^-4	0.966	INTERGENIC
X	16923541	X_16923541_DEL [dm3] X_17029508_DEL [dm6]	ACACA	A	1.195e^-4	0.966	INTRON CG45002
3L	20923256	3L_20923256_SNP [dm3] 3L_20930156_SNP [dm6]	T	C	1.197e^-4	0.966	DOWNSTREAM CG10589 INTRON fng
2L	1365894	2L_1365894_SNP [dm3] 2L_1365894_SNP [dm6]	C	T	1.197e^-4	0.966	INTERGENIC
X	10282263	X_10282263_DEL [dm3] X_10388230_DEL [dm6]	GGGCACTTAGCCG...	G	1.208e^-4	0.966	INTRON flw
2L	20748143	2L_20748143_SNP [dm3] 2L_20748143_SNP [dm6]	C	A	1.210e^-4	0.966	UTR_3_PRIME Fs_2_Ket INTRON Fs_2_Ket
2L	7674660	2L_7674660_SNP [dm3] 2L_7674660_SNP [dm6]	C	G	1.216e^-4	0.966	UTR_5_PRIME Slob INTRON Myo28B1
3R	27209656	3R_27209656_SNP [dm3] 3R_31383934_SNP [dm6]	T	G	1.217e^-4	0.966	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_Trl
3L	1866884	3L_1866884_SNP [dm3] 3L_1866884_SNP [dm6]	T	G	1.232e^-4	0.966	INTRON CG12025	TF binding site BDTNP1_TFBS_twi
2L	7676018	2L_7676018_SNP [dm3] 2L_7676018_SNP [dm6]	T	C	1.233e^-4	0.966	UPSTREAM Slob INTRON Myo28B1
X	13931251	X_13931251_SNP [dm3] X_14037218_SNP [dm6]	C	T	1.235e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	26483217	3R_26483217_SNP [dm3] 3R_30657495_SNP [dm6]	A	T	1.236e^-4	0.966	INTERGENIC
2L	20229987	2L_20229987_SNP [dm3] 2L_20229987_SNP [dm6]	C	T	1.249e^-4	0.966	INTERGENIC
X	8095878	X_8095878_SNP [dm3] X_8201845_SNP [dm6]	A	G	1.253e^-4	0.966	INTRON sdt
3L	2937917	3L_2937917_SNP [dm3] 3L_2937917_SNP [dm6]	C	T	1.253e^-4	0.966	INTRON Shab
X	3728730	X_3728730_SNP [dm3] X_3834697_SNP [dm6]	G	A	1.266e^-4	0.966	INTRON ec	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10707559	2R_10707559_SNP [dm3] 2R_14820054_SNP [dm6]	G	A	1.270e^-4	0.966	UPSTREAM CG10202 INTERGENIC
2R	10707565	2R_10707565_SNP [dm3] 2R_14820060_SNP [dm6]	G	A	1.270e^-4	0.966	UPSTREAM CG10202 INTERGENIC
2L	1980948	2L_1980948_SNP [dm3] 2L_1980948_SNP [dm6]	G	T	1.280e^-4	0.966	UPSTREAM CG15362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13282604	3L_13282604_SNP [dm3] 3L_13289504_SNP [dm6]	G	A	1.282e^-4	0.966	INTERGENIC
2L	16772410	2L_16772410_SNP [dm3] 2L_16772410_SNP [dm6]	T	A	1.300e^-4	0.966	INTRON Mhc
3L	2092298	3L_2092298_SNP [dm3] 3L_2092298_SNP [dm6]	G	T	1.309e^-4	0.966	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8322654	2R_8322654_INS [dm3] 2R_12435149_INS [dm6]	A	ACAA	1.318e^-4	0.966	CODON_INSERTION DUBAI UPSTREAM CG30051	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	9025238	3L_9025238_SNP [dm3] 3L_9032138_SNP [dm6]	G	T	1.320e^-4	0.966	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9025240	3L_9025240_SNP [dm3] 3L_9032140_SNP [dm6]	T	A	1.320e^-4	0.966	INTERGENIC	TF binding site mE1_TFBS_cad
3R	16764992	3R_16764992_SNP [dm3] 3R_20939270_SNP [dm6]	T	C	1.325e^-4	0.966	INTRON CG31191
3L	10372990	3L_10372990_SNP [dm3] 3L_10379890_SNP [dm6]	A	T	1.339e^-4	0.966	INTERGENIC
X	5334174	X_5334174_SNP [dm3] X_5440141_SNP [dm6]	T	G	1.354e^-4	0.966	INTERGENIC
2L	5073439	2L_5073439_SNP [dm3] 2L_5073439_SNP [dm6]	A	G	1.359e^-4	0.966	UTR_3_PRIME pgant5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9837062	3L_9837062_SNP [dm3] 3L_9843962_SNP [dm6]	A	G	1.360e^-4	0.966	SYNONYMOUS_CODING RasGAP1	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_HSA mE1_TFBS_sens
3R	9755267	3R_9755267_SNP [dm3] 3R_13929545_SNP [dm6]	T	A	1.371e^-4	0.966	INTERGENIC
2L	22063027	2L_22063027_SNP [dm3] 2L_22063027_SNP [dm6]	C	T	1.378e^-4	0.966	INTERGENIC
2R	5524334	2R_5524334_SNP [dm3] 2R_9636829_SNP [dm6]	A	G	1.385e^-4	0.966	DOWNSTREAM CR44070 INTRON Mmp2
2L	15951148	2L_15951148_SNP [dm3] 2L_15951148_SNP [dm6]	A	T	1.391e^-4	0.966	INTRON beat-Ib
3L	11921095	3L_11921095_SNP [dm3] 3L_11927995_SNP [dm6]	G	A	1.396e^-4	0.966	UTR_5_PRIME byn INTRON CG44837	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7670024	2L_7670024_SNP [dm3] 2L_7670024_SNP [dm6]	C	G	1.420e^-4	0.966	INTRON Slob & 1 other
2L	12134200	2L_12134200_SNP [dm3] 2L_12134200_SNP [dm6]	A	T	1.420e^-4	0.966	UPSTREAM rho-6 INTERGENIC
2R	15383279	2R_15383279_SNP [dm3] 2R_19495774_SNP [dm6]	C	G	1.423e^-4	0.966	SYNONYMOUS_CODING hpo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22440536	3R_22440536_SNP [dm3] 3R_26614814_SNP [dm6]	C	T	1.426e^-4	0.966	INTERGENIC
2R	12686719	2R_12686719_SNP [dm3] 2R_16799214_SNP [dm6]	G	A	1.445e^-4	0.966	INTERGENIC
2L	13183141	2L_13183141_SNP [dm3] 2L_13183141_SNP [dm6]	T	C	1.458e^-4	0.966	SYNONYMOUS_CODING CG5287 UPSTREAM CG5458 & 1 other DOWNSTREAM CG16974	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11049617	3L_11049617_DEL [dm3] 3L_11056517_DEL [dm6]	TCTTTTCTTT	T	1.461e^-4	0.966	UPSTREAM CG7888 INTRON CG7888
2L	16797655	2L_16797655_SNP [dm3] 2L_16797655_SNP [dm6]	A	T	1.466e^-4	0.966	SYNONYMOUS_CODING Ugt36Bb	TF binding site mE1_TFBS_sens
X	6701978	X_6701978_SNP [dm3] X_6807945_SNP [dm6]	G	A	1.468e^-4	0.966	SYNONYMOUS_CODING pod1 INTRON pod1
2L	21894737	2L_21894737_SNP [dm3] 2L_21894737_SNP [dm6]	C	T	1.470e^-4	0.966	EXON CR43762	TF binding site mE1_TFBS_cad
2L	8079081	2L_8079081_SNP [dm3] 2L_8079081_SNP [dm6]	A	G	1.478e^-4	0.966	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_sens
2L	16865339	2L_16865339_SNP [dm3] 2L_16865339_SNP [dm6]	C	A	1.479e^-4	0.966	INTERGENIC
2L	16772406	2L_16772406_SNP [dm3] 2L_16772406_SNP [dm6]	A	G	1.493e^-4	0.966	INTRON Mhc
3R	26934173	3R_26934173_SNP [dm3] 3R_31108451_SNP [dm6]	A	G	1.495e^-4	0.966	NON_SYNONYMOUS_CODING CG11318	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7667386	2L_7667386_SNP [dm3] 2L_7667386_SNP [dm6]	G	A	1.496e^-4	0.966	INTRON Slob & 1 other
3L	21556999	3L_21556999_SNP [dm3] 3L_21563899_SNP [dm6]	C	T	1.497e^-4	0.966	INTERGENIC
2R	5253386	2R_5253386_SNP [dm3] 2R_9365881_SNP [dm6]	G	A	1.502e^-4	0.966	INTRON CG13954	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12586521	3L_12586521_SNP [dm3] 3L_12593421_SNP [dm6]	G	A	1.502e^-4	0.966	INTRON ara	TF binding site mE1_TFBS_HSA
2R	12715779	2R_12715779_SNP [dm3] 2R_16828274_SNP [dm6]	G	A	1.506e^-4	0.966	UPSTREAM CR43650 DOWNSTREAM CG34460 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12716021	2R_12716021_DEL [dm3] 2R_16828516_DEL [dm6]	CA	C	1.506e^-4	0.966	UPSTREAM CR43650 DOWNSTREAM CG34460 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	3429196	X_3429196_SNP [dm3] X_3535163_SNP [dm6]	A	G	1.527e^-4	0.966	INTRON CG32791	TF binding site mE1_TFBS_inv
X	18696669	X_18696669_SNP [dm3] X_18802636_SNP [dm6]	T	C	1.528e^-4	0.966	INTRON Pk17E	TF binding site mE1_TFBS_sens
2L	923936	2L_923936_SNP [dm3] 2L_923936_SNP [dm6]	C	T	1.529e^-4	0.966	INTRON CG4341	TF binding site mE1_TFBS_chinmo
2L	16801686	2L_16801686_INS [dm3] 2L_16801686_INS [dm6]	C	CGCC	1.531e^-4	0.966	DOWNSTREAM CG13280 & 1 other INTERGENIC
2R	20136554	2R_20136554_SNP [dm3] 2R_24249031_SNP [dm6]	T	G	1.531e^-4	0.966	DOWNSTREAM Ir60a INTRON nord	TF binding site mE1_TFBS_chinmo
X	10308692	X_10308692_SNP [dm3] X_10414659_SNP [dm6]	A	G	1.546e^-4	0.966	INTRON CG32683
X	7758853	X_7758853_SNP [dm3] X_7864820_SNP [dm6]	T	A	1.548e^-4	0.966	DOWNSTREAM Ir7b INTERGENIC
3L	9025274	3L_9025274_SNP [dm3] 3L_9032174_SNP [dm6]	T	A	1.551e^-4	0.966	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17714535	2R_17714535_SNP [dm3] 2R_21827030_SNP [dm6]	T	C	1.556e^-4	0.966	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2214170	3L_2214170_SNP [dm3] 3L_2214170_SNP [dm6]	C	T	1.556e^-4	0.966	INTERGENIC
2R	14229533	2R_14229533_SNP [dm3] 2R_18342028_SNP [dm6]	T	A	1.559e^-4	0.966	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14229534	2R_14229534_SNP [dm3] 2R_18342029_SNP [dm6]	A	C	1.559e^-4	0.966	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12135216	2L_12135216_SNP [dm3] 2L_12135216_SNP [dm6]	T	A	1.578e^-4	0.966	INTERGENIC
2R	6644889	2R_6644889_SNP [dm3] 2R_10757384_SNP [dm6]	G	A	1.579e^-4	0.966	NON_SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11784209	3R_11784209_SNP [dm3] 3R_15958487_SNP [dm6]	A	G	1.582e^-4	0.966	INTRON Sap47
2R	14186405	2R_14186405_SNP [dm3] 2R_18298900_SNP [dm6]	T	A	1.584e^-4	0.966	UTR_3_PRIME CG18539 UPSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_twi
3L	12505807	3L_12505807_SNP [dm3] 3L_12512707_SNP [dm6]	A	C	1.584e^-4	0.966	SYNONYMOUS_CODING sti	TF binding site mE1_TFBS_sens
2R	4251866	2R_4251866_INS [dm3] 2R_8364361_INS [dm6]	A	AGA	1.588e^-4	0.966	UTR_5_PRIME swif UTR_3_PRIME cola INTRON pdm3
3L	10804494	3L_10804494_SNP [dm3] 3L_10811394_SNP [dm6]	G	A	1.591e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	21740545	2L_21740545_SNP [dm3] 2L_21740545_SNP [dm6]	A	G	1.592e^-4	0.966	UTR_3_PRIME step DOWNSTREAM step
X	14369297	X_14369297_SNP [dm3] X_14475264_SNP [dm6]	A	G	1.601e^-4	0.966	SYNONYMOUS_CODING CG9411	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4239797	3R_4239797_SNP [dm3] 3R_8414075_SNP [dm6]	T	A	1.620e^-4	0.966	INTRON CG45263
X	18407946	X_18407946_SNP [dm3] X_18513913_SNP [dm6]	A	G	1.638e^-4	0.966	INTRON CG6470	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16798406	2L_16798406_SNP [dm3] 2L_16798406_SNP [dm6]	C	T	1.643e^-4	0.966	UPSTREAM Ugt36Bc DOWNSTREAM Ugt36Bb INTERGENIC
2R	19404028	2R_19404028_SNP [dm3] 2R_23516505_SNP [dm6]	C	A	1.644e^-4	0.966	INTERGENIC
2L	7675466	2L_7675466_SNP [dm3] 2L_7675466_SNP [dm6]	C	T	1.647e^-4	0.966	UPSTREAM Slob INTRON Myo28B1
2L	22000957	2L_22000957_SNP [dm3] 2L_22000957_SNP [dm6]	T	C	1.658e^-4	0.966	UPSTREAM CR44916 INTERGENIC
2R	5408603	2R_5408603_SNP [dm3] 2R_9521098_SNP [dm6]	G	A	1.662e^-4	0.966	INTRON brp	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	20213799	2L_20213799_SNP [dm3] 2L_20213799_SNP [dm6]	T	A	1.663e^-4	0.966	INTERGENIC	transposable element FlyBase
3R	18656258	3R_18656258_SNP [dm3] 3R_22830536_SNP [dm6]	C	A	1.672e^-4	0.966	INTERGENIC
2L	11191010	2L_11191010_SNP [dm3] 2L_11191010_SNP [dm6]	G	C	1.672e^-4	0.966	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7675328	2L_7675328_SNP [dm3] 2L_7675328_SNP [dm6]	T	C	1.682e^-4	0.966	UPSTREAM Slob INTRON Myo28B1
2L	13767338	2L_13767338_SNP [dm3] 2L_13767338_SNP [dm6]	A	G	1.684e^-4	0.966	INTRON TM9SF4
2L	13767916	2L_13767916_SNP [dm3] 2L_13767916_SNP [dm6]	A	T	1.684e^-4	0.966	INTRON TM9SF4
2L	16802842	2L_16802842_SNP [dm3] 2L_16802842_SNP [dm6]	A	G	1.717e^-4	0.966	SYNONYMOUS_CODING CG13280	TF binding site mE1_TFBS_chinmo
3L	13368883	3L_13368883_SNP [dm3] 3L_13375783_SNP [dm6]	A	G	1.721e^-4	0.966	INTERGENIC	TF binding site mE1_TFBS_HSA
X	5479500	X_5479500_SNP [dm3] X_5585467_SNP [dm6]	T	C	1.722e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15038680	3L_15038680_SNP [dm3] 3L_15045580_SNP [dm6]	G	A	1.723e^-4	0.966	INTRON Sytbeta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	5979219	X_5979219_SNP [dm3] X_6085186_SNP [dm6]	A	G	1.726e^-4	0.966	NON_SYNONYMOUS_CODING raptor INTRON Mipp2	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16800494	2L_16800494_SNP [dm3] 2L_16800494_SNP [dm6]	G	A	1.728e^-4	0.966	SYNONYMOUS_CODING Ugt36Bc
X	22046457	X_22046457_SNP [dm3] X_22644621_SNP [dm6]	G	A	1.732e^-4	0.966	INTERGENIC
2L	20223522	2L_20223522_SNP [dm3] 2L_20223522_SNP [dm6]	T	G	1.733e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11124627	3L_11124627_SNP [dm3] 3L_11131527_SNP [dm6]	T	G	1.736e^-4	0.966	DOWNSTREAM CG32074 & 1 other INTRON CG42575
2L	20169578	2L_20169578_SNP [dm3] 2L_20169578_SNP [dm6]	T	A	1.742e^-4	0.966	INTERGENIC	transposable element FlyBase
2L	20213788	2L_20213788_SNP [dm3] 2L_20213788_SNP [dm6]	A	C	1.748e^-4	0.966	INTERGENIC	transposable element FlyBase
2L	15730961	2L_15730961_DEL [dm3] 2L_15730961_DEL [dm6]	AATAGTAGTTCATA...	A	1.765e^-4	0.966	INTRON CycE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	7670728	2L_7670728_SNP [dm3] 2L_7670728_SNP [dm6]	G	C	1.765e^-4	0.966	INTRON Slob & 1 other
2R	6772080	2R_6772080_SNP [dm3] 2R_10884575_SNP [dm6]	G	C	1.768e^-4	0.966	NON_SYNONYMOUS_CODING CG18003 UPSTREAM CG18004 & 1 other
2L	5135959	2L_5135959_SNP [dm3] 2L_5135959_SNP [dm6]	C	G	1.769e^-4	0.966	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	13491726	3R_13491726_SNP [dm3] 3R_17666004_SNP [dm6]	C	T	1.769e^-4	0.966	INTRON CG14322	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	10364143	3L_10364143_SNP [dm3] 3L_10371043_SNP [dm6]	T	A	1.772e^-4	0.966	INTERGENIC
3R	22248530	3R_22248530_SNP [dm3] 3R_26422808_SNP [dm6]	C	G	1.772e^-4	0.966	INTERGENIC
X	22046589	X_22046589_SNP [dm3] X_22644753_SNP [dm6]	C	A	1.785e^-4	0.966	INTERGENIC
2R	10720283	2R_10720283_SNP [dm3] 2R_14832778_SNP [dm6]	T	A	1.787e^-4	0.966	UPSTREAM CG10205 INTERGENIC
3L	7693079	3L_7693079_SNP [dm3] 3L_7699979_SNP [dm6]	T	C	1.787e^-4	0.966	SYNONYMOUS_CODING Ank2 INTRON CG32373
2R	7838147	2R_7838147_SNP [dm3] 2R_11950642_SNP [dm6]	C	G	1.817e^-4	0.966	INTRON CG13188
3R	20648093	3R_20648093_SNP [dm3] 3R_24822371_SNP [dm6]	T	A	1.831e^-4	0.966	DOWNSTREAM niki & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	12134331	2R_12134331_SNP [dm3] 2R_16246826_SNP [dm6]	G	C	1.832e^-4	0.966	NON_SYNONYMOUS_CODING CngA
2R	6175914	2R_6175914_SNP [dm3] 2R_10288409_SNP [dm6]	A	C	1.842e^-4	0.966	INTRON CAP
3R	3406144	3R_3406144_SNP [dm3] 3R_7580422_SNP [dm6]	A	T	1.850e^-4	0.966	INTRON CG34127
2L	20235150	2L_20235150_SNP [dm3] 2L_20235150_SNP [dm6]	G	A	1.855e^-4	0.966	INTERGENIC
2L	20204684	2L_20204684_SNP [dm3] 2L_20204684_SNP [dm6]	A	G	1.857e^-4	0.966	INTERGENIC	transposable element FlyBase
3R	10059225	3R_10059225_SNP [dm3] 3R_14233503_SNP [dm6]	A	C	1.862e^-4	0.966	INTERGENIC
3R	23398962	3R_23398962_SNP [dm3] 3R_27573240_SNP [dm6]	C	A	1.872e^-4	0.966	INTRON wdb
3L	17753591	3L_17753591_SNP [dm3] 3L_17760491_SNP [dm6]	G	C	1.881e^-4	0.966	NON_SYNONYMOUS_CODING CG32181 DOWNSTREAM CG32182 INTRON Adgf-A & 1 other
2R	5336229	2R_5336229_SNP [dm3] 2R_9448724_SNP [dm6]	C	G	1.886e^-4	0.966	INTRON Camta	TF binding site mE1_TFBS_HSA
2R	7838156	2R_7838156_SNP [dm3] 2R_11950651_SNP [dm6]	G	A	1.895e^-4	0.966	INTRON CG13188
3L	12086774	3L_12086774_SNP [dm3] 3L_12093674_SNP [dm6]	C	A	1.915e^-4	0.966	INTERGENIC
2L	11853470	2L_11853470_SNP [dm3] 2L_11853470_SNP [dm6]	C	T	1.916e^-4	0.966	UTR_5_PRIME CG42751 DOWNSTREAM Mal-B2 INTRON Pde1c
2R	17389183	2R_17389183_SNP [dm3] 2R_21501678_SNP [dm6]	T	G	1.917e^-4	0.966	UTR_5_PRIME TAF1C-like UPSTREAM MESK2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
X	10058329	X_10058329_SNP [dm3] X_10164296_SNP [dm6]	T	G	1.919e^-4	0.966	INTRON CR44894 & 1 other
X	10058331	X_10058331_SNP [dm3] X_10164298_SNP [dm6]	G	A	1.919e^-4	0.966	INTRON CR44894 & 1 other
3L	12086858	3L_12086858_INS [dm3] 3L_12093758_INS [dm6]	C	CCA	1.920e^-4	0.966	INTERGENIC
3L	18326323	3L_18326323_SNP [dm3] 3L_18333223_SNP [dm6]	G	A	1.922e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	26281699	3R_26281699_SNP [dm3] 3R_30455977_SNP [dm6]	C	A	1.936e^-4	0.966	UPSTREAM aralar1 DOWNSTREAM CG2224 INTERGENIC
2L	9611692	2L_9611692_SNP [dm3] 2L_9611692_SNP [dm6]	G	C	1.937e^-4	0.966	NON_SYNONYMOUS_CODING gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9090616	X_9090616_SNP [dm3] X_9196583_SNP [dm6]	T	C	1.945e^-4	0.966	UPSTREAM CG12118 DOWNSTREAM su_r_ INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13282691	3L_13282691_SNP [dm3] 3L_13289591_SNP [dm6]	A	G	1.947e^-4	0.966	INTERGENIC
3L	566601	3L_566601_SNP [dm3] 3L_566601_SNP [dm6]	G	A	1.949e^-4	0.966	INTRON hipk
2R	12134272	2R_12134272_SNP [dm3] 2R_16246767_SNP [dm6]	A	G	1.951e^-4	0.966	SYNONYMOUS_CODING CngA
2L	3314226	2L_3314226_SNP [dm3] 2L_3314226_SNP [dm6]	A	G	1.951e^-4	0.966	INTRON CG3277
3L	3613411	3L_3613411_SNP [dm3] 3L_3613411_SNP [dm6]	T	C	1.965e^-4	0.966	INTRON CG10359
2L	14957232	2L_14957232_SNP [dm3] 2L_14957232_SNP [dm6]	C	T	1.969e^-4	0.966	INTRON CG42313
3R	6361716	3R_6361716_SNP [dm3] 3R_10535994_SNP [dm6]	C	T	1.969e^-4	0.966	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19272485	2L_19272485_DEL [dm3] 2L_19272485_DEL [dm6]	AG	A	1.969e^-4	0.966	INTRON CR44190
2L	19272491	2L_19272491_SNP [dm3] 2L_19272491_SNP [dm6]	G	C	1.969e^-4	0.966	INTRON CR44190
2L	19272502	2L_19272502_SNP [dm3] 2L_19272502_SNP [dm6]	G	C	1.969e^-4	0.966	INTRON CR44190
3R	16651015	3R_16651015_SNP [dm3] 3R_20825293_SNP [dm6]	A	T	1.976e^-4	0.966	SYNONYMOUS_CODING AdSS	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	22048257	X_22048257_SNP [dm3] X_22646421_SNP [dm6]	G	C	1.979e^-4	0.966	INTERGENIC
3L	7214463	3L_7214463_SNP [dm3] 3L_7221363_SNP [dm6]	C	T	1.988e^-4	0.966	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7672483	2L_7672483_SNP [dm3] 2L_7672483_SNP [dm6]	C	G	2.016e^-4	0.966	INTRON Slob & 1 other
3L	12082505	3L_12082505_SNP [dm3] 3L_12089405_SNP [dm6]	G	C	2.017e^-4	0.966	DOWNSTREAM CG17154 INTERGENIC	TF binding site mE1_TFBS_inv
3L	9248290	3L_9248290_SNP [dm3] 3L_9255190_SNP [dm6]	G	T	2.024e^-4	0.966	INTRON GluRIB
2L	20203599	2L_20203599_SNP [dm3] 2L_20203599_SNP [dm6]	C	G	2.034e^-4	0.966	INTERGENIC	transposable element FlyBase
2R	1089662	2R_1089662_SNP [dm3] 2R_5202157_SNP [dm6]	A	G	2.038e^-4	0.966	INTRON Nipped-A
3R	22248531	3R_22248531_SNP [dm3] 3R_26422809_SNP [dm6]	C	A	2.049e^-4	0.966	INTERGENIC
3R	3626152	3R_3626152_SNP [dm3] 3R_7800430_SNP [dm6]	A	T	2.051e^-4	0.966	INTRON CG3014
3L	2936119	3L_2936119_SNP [dm3] 3L_2936119_SNP [dm6]	G	A	2.055e^-4	0.966	INTRON Shab
3L	24228725	3L_24228725_SNP [dm3] 3L_24235625_SNP [dm6]	C	A	2.059e^-4	0.966	INTRON Snap25
3R	7141239	3R_7141239_SNP [dm3] 3R_11315517_SNP [dm6]	G	T	2.059e^-4	0.966	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14662233	3L_14662233_SNP [dm3] 3L_14669133_SNP [dm6]	A	G	2.067e^-4	0.966	INTRON dlp
3L	9246308	3L_9246308_SNP [dm3] 3L_9253208_SNP [dm6]	G	A	2.067e^-4	0.966	INTRON GluRIB
2L	20224377	2L_20224377_SNP [dm3] 2L_20224377_SNP [dm6]	G	T	2.073e^-4	0.966	INTERGENIC
3R	4239806	3R_4239806_SNP [dm3] 3R_8414084_SNP [dm6]	C	G	2.076e^-4	0.966	INTRON CG45263
3R	19174764	3R_19174764_SNP [dm3] 3R_23349042_SNP [dm6]	T	C	2.109e^-4	0.966	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1866893	3L_1866893_SNP [dm3] 3L_1866893_SNP [dm6]	T	G	2.121e^-4	0.966	INTRON CG12025	TF binding site BDTNP1_TFBS_twi
3R	13429279	3R_13429279_SNP [dm3] 3R_17603557_SNP [dm6]	T	A	2.122e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18656274	3R_18656274_SNP [dm3] 3R_22830552_SNP [dm6]	A	T	2.128e^-4	0.966	INTERGENIC
2R	17387345	2R_17387345_SNP [dm3] 2R_21499840_SNP [dm6]	T	C	2.131e^-4	0.966	NON_SYNONYMOUS_CODING TAF1C-like	TF binding site mE1_TFBS_sens
2L	12753422	2L_12753422_SNP [dm3] 2L_12753422_SNP [dm6]	T	C	2.140e^-4	0.966	INTERGENIC
X	4938645	X_4938645_SNP [dm3] X_5044612_SNP [dm6]	G	A	2.143e^-4	0.966	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	20171447	2L_20171447_SNP [dm3] 2L_20171447_SNP [dm6]	A	T	2.148e^-4	0.966	INTERGENIC	transposable element FlyBase
2L	20232032	2L_20232032_SNP [dm3] 2L_20232032_SNP [dm6]	C	G	2.148e^-4	0.966	INTERGENIC
2L	20234835	2L_20234835_SNP [dm3] 2L_20234835_SNP [dm6]	T	A	2.148e^-4	0.966	INTERGENIC
2L	11910667	2L_11910667_SNP [dm3] 2L_11910667_SNP [dm6]	G	C	2.191e^-4	0.966	INTRON Pde1c
3L	16755495	3L_16755495_SNP [dm3] 3L_16762395_SNP [dm6]	A	T	2.194e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	3670687	2L_3670687_SNP [dm3] 2L_3670687_SNP [dm6]	C	T	2.200e^-4	0.966	UPSTREAM Sfp24Bb & 1 other INTRON CG34340
2L	3670689	2L_3670689_SNP [dm3] 2L_3670689_SNP [dm6]	A	G	2.200e^-4	0.966	UPSTREAM Sfp24Bb & 1 other INTRON CG34340
2L	3670690	2L_3670690_SNP [dm3] 2L_3670690_SNP [dm6]	T	A	2.200e^-4	0.966	UPSTREAM Sfp24Bb & 1 other INTRON CG34340
X	21125165	X_21125165_SNP [dm3] X_21254138_SNP [dm6]	A	G	2.202e^-4	0.966	INTRON CG32521
X	22155632	X_22155632_SNP [dm3] X_22753796_SNP [dm6]	T	A	2.206e^-4	0.966	INTRON CR44997	transposable element FlyBase
2R	14555761	2R_14555761_SNP [dm3] 2R_18668256_SNP [dm6]	T	C	2.213e^-4	0.966	NON_SYNONYMOUS_CODING edl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13429265	3R_13429265_DEL [dm3] 3R_17603543_DEL [dm6]	AG	A	2.214e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16865279	2L_16865279_SNP [dm3] 2L_16865279_SNP [dm6]	A	T	2.214e^-4	0.966	INTERGENIC
X	16511565	X_16511565_SNP [dm3] X_16617532_SNP [dm6]	T	C	2.222e^-4	0.966	INTRON CG9782
3L	20051600	3L_20051600_SNP [dm3] 3L_20058500_SNP [dm6]	G	A	2.231e^-4	0.966	DOWNSTREAM sNPF-R INTERGENIC
3R	22429960	3R_22429960_SNP [dm3] 3R_26604238_SNP [dm6]	C	A	2.232e^-4	0.966	DOWNSTREAM scrib INTERGENIC
3L	3443881	3L_3443881_SNP [dm3] 3L_3443881_SNP [dm6]	C	G	2.234e^-4	0.966	INTRON eIF5B
2R	17352372	2R_17352372_SNP [dm3] 2R_21464867_SNP [dm6]	T	C	2.242e^-4	0.966	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3L	11391887	3L_11391887_SNP [dm3] 3L_11398787_SNP [dm6]	C	A	2.244e^-4	0.966	DOWNSTREAM CG44362 INTERGENIC
3L	24229681	3L_24229681_SNP [dm3] 3L_24236581_SNP [dm6]	A	T	2.244e^-4	0.966	INTRON Snap25
2L	7675436	2L_7675436_SNP [dm3] 2L_7675436_SNP [dm6]	A	C	2.247e^-4	0.966	UPSTREAM Slob INTRON Myo28B1
3R	22429974	3R_22429974_SNP [dm3] 3R_26604252_SNP [dm6]	A	T	2.248e^-4	0.966	DOWNSTREAM scrib INTERGENIC
2R	5238727	2R_5238727_INS [dm3] 2R_9351222_INS [dm6]	T	TA	2.248e^-4	0.966	INTRON CG13954 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1660158	2R_1660158_SNP [dm3] 2R_5772653_SNP [dm6]	A	T	2.251e^-4	0.966	UTR_3_PRIME Gp210 DOWNSTREAM Gp210	TF binding site BDTNP1_TFBS_dl
3R	12366161	3R_12366161_SNP [dm3] 3R_16540439_SNP [dm6]	A	C	2.253e^-4	0.966	INTRON CG42342
2L	9274932	2L_9274932_SNP [dm3] 2L_9274932_SNP [dm6]	G	C	2.265e^-4	0.966	INTRON Ggamma30A
2L	9612014	2L_9612014_SNP [dm3] 2L_9612014_SNP [dm6]	G	A	2.266e^-4	0.966	NON_SYNONYMOUS_CODING gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	11012506	3R_11012506_SNP [dm3] 3R_15186784_SNP [dm6]	C	A	2.268e^-4	0.966	SYNONYMOUS_CODING Gyc88E
2L	20146428	2L_20146428_SNP [dm3] 2L_20146428_SNP [dm6]	A	G	2.279e^-4	0.966	INTERGENIC
3R	22034438	3R_22034438_SNP [dm3] 3R_26208716_SNP [dm6]	T	C	2.281e^-4	0.966	INTRON CR44320
2L	21844401	2L_21844401_SNP [dm3] 2L_21844401_SNP [dm6]	C	T	2.285e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23817745	3R_23817745_SNP [dm3] 3R_27992023_SNP [dm6]	A	T	2.290e^-4	0.966	INTERGENIC
2L	19931936	2L_19931936_SNP [dm3] 2L_19931936_SNP [dm6]	T	C	2.292e^-4	0.966	INTRON sick
3R	19174857	3R_19174857_SNP [dm3] 3R_23349135_SNP [dm6]	A	T	2.295e^-4	0.966	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15837440	2L_15837440_SNP [dm3] 2L_15837440_SNP [dm6]	C	T	2.304e^-4	0.966	EXON CR31822
2L	15837445	2L_15837445_SNP [dm3] 2L_15837445_SNP [dm6]	T	G	2.304e^-4	0.966	UPSTREAM CR31822 INTERGENIC
2R	5524704	2R_5524704_SNP [dm3] 2R_9637199_SNP [dm6]	C	T	2.327e^-4	0.966	INTRON Mmp2 EXON CR44070
2R	14414578	2R_14414578_SNP [dm3] 2R_18527073_SNP [dm6]	T	C	2.335e^-4	0.966	UPSTREAM CG10924 DOWNSTREAM CG43066 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19828650	2L_19828650_SNP [dm3] 2L_19828650_SNP [dm6]	A	G	2.344e^-4	0.966	SYNONYMOUS_CODING sick UTR_5_PRIME sick INTRON sick	TF binding site mE1_TFBS_cad
2L	12781135	2L_12781135_SNP [dm3] 2L_12781135_SNP [dm6]	G	T	2.345e^-4	0.966	INTERGENIC
2R	4171853	2R_4171853_SNP [dm3] 2R_8284348_SNP [dm6]	T	A	2.346e^-4	0.966	INTERGENIC
3R	12242821	3R_12242821_SNP [dm3] 3R_16417099_SNP [dm6]	A	G	2.347e^-4	0.966	INTERGENIC	regulatory region REDfly_CRMs
3L	16726378	3L_16726378_SNP [dm3] 3L_16733278_SNP [dm6]	C	T	2.361e^-4	0.966	UPSTREAM CG9701 INTERGENIC
2L	1785430	2L_1785430_SNP [dm3] 2L_1785430_SNP [dm6]	T	A	2.362e^-4	0.966	DOWNSTREAM Gr22e INTERGENIC
3R	13423075	3R_13423075_SNP [dm3] 3R_17597353_SNP [dm6]	T	C	2.363e^-4	0.966	DOWNSTREAM CG7606 INTERGENIC
X	18696678	X_18696678_INS [dm3] X_18802645_INS [dm6]	A	AA	2.364e^-4	0.966	INTRON Pk17E	TF binding site mE1_TFBS_sens
2R	12030531	2R_12030531_SNP [dm3] 2R_16143026_SNP [dm6]	C	G	2.364e^-4	0.966	UPSTREAM Aats-cys DOWNSTREAM CG30094 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	22063032	2L_22063032_SNP [dm3] 2L_22063032_SNP [dm6]	C	A	2.371e^-4	0.966	INTERGENIC
2R	7050524	2R_7050524_SNP [dm3] 2R_11163019_SNP [dm6]	G	A	2.384e^-4	0.966	INTRON shn & 1 other
2L	19513384	2L_19513384_SNP [dm3] 2L_19513384_SNP [dm6]	G	A	2.384e^-4	0.966	SYNONYMOUS_CODING CG10186	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	24234632	3L_24234632_SNP [dm3] 3L_24241532_SNP [dm6]	A	G	2.387e^-4	0.966	INTRON Snap25
2L	13548110	2L_13548110_INS [dm3] 2L_13548110_INS [dm6]	G	GCGTGTG	2.400e^-4	0.966	UPSTREAM B4 INTRON B4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	16865166	2R_16865166_SNP [dm3] 2R_20977661_SNP [dm6]	C	T	2.407e^-4	0.966	UTR_3_PRIME CG15650 DOWNSTREAM CG34115 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	7292871	3L_7292871_DEL [dm3] 3L_7299771_DEL [dm6]	CCA	C	2.413e^-4	0.966	INTRON unc-13-4A
3R	18679541	3R_18679541_INS [dm3] 3R_22853819_INS [dm6]	G	GT	2.414e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
X	12134805	X_12134805_SNP [dm3] X_12240772_SNP [dm6]	A	C	2.430e^-4	0.966	INTRON Ten-a
2R	11309725	2R_11309725_SNP [dm3] 2R_15422220_SNP [dm6]	G	A	2.440e^-4	0.966	DOWNSTREAM CG30472 INTRON CG43729	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2518018	3R_2518018_SNP [dm3] 3R_6692296_SNP [dm6]	A	C	2.443e^-4	0.966	UPSTREAM Ccp84Ad & 1 other INTERGENIC
3L	5868684	3L_5868684_SNP [dm3] 3L_5875584_SNP [dm6]	G	A	2.444e^-4	0.966	DOWNSTREAM CG18586 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10372993	3L_10372993_SNP [dm3] 3L_10379893_SNP [dm6]	A	G	2.453e^-4	0.966	INTERGENIC
2R	565996	2R_565996_SNP [dm3] 2R_4678491_SNP [dm6]	G	A	2.454e^-4	0.966	INTERGENIC	transposable element FlyBase
2L	15950346	2L_15950346_SNP [dm3] 2L_15950346_SNP [dm6]	T	C	2.457e^-4	0.966	INTRON beat-Ib
X	19968069	X_19968069_SNP [dm3] X_20074036_SNP [dm6]	G	A	2.460e^-4	0.966	INTERGENIC
2L	11329366	2L_11329366_SNP [dm3] 2L_11329366_SNP [dm6]	A	T	2.462e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	20203997	2L_20203997_SNP [dm3] 2L_20203997_SNP [dm6]	G	T	2.472e^-4	0.966	INTERGENIC	transposable element FlyBase
2R	8290563	2R_8290563_SNP [dm3] 2R_12403058_SNP [dm6]	A	G	2.487e^-4	0.966	INTRON Cpr49Ae	TF binding site mE1_TFBS_sens
X	22047938	X_22047938_SNP [dm3] X_22646102_SNP [dm6]	T	C	2.489e^-4	0.966	INTERGENIC
2R	17387293	2R_17387293_SNP [dm3] 2R_21499788_SNP [dm6]	C	T	2.491e^-4	0.966	SYNONYMOUS_CODING TAF1C-like	TF binding site mE1_TFBS_sens
2R	6800014	2R_6800014_DEL [dm3] 2R_10912509_DEL [dm6]	TCG	T	2.497e^-4	0.966	INTERGENIC
2R	10633506	2R_10633506_SNP [dm3] 2R_14746001_SNP [dm6]	C	T	2.497e^-4	0.966	SYNONYMOUS_CODING Dro UPSTREAM CG12858
2L	11882670	2L_11882670_SNP [dm3] 2L_11882670_SNP [dm6]	A	T	2.503e^-4	0.966	INTRON Pde1c
2R	7903690	2R_7903690_SNP [dm3] 2R_12016185_SNP [dm6]	T	C	2.503e^-4	0.966	DOWNSTREAM CR44306 INTRON otk	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
2R	13394823	2R_13394823_SNP [dm3] 2R_17507318_SNP [dm6]	C	T	2.511e^-4	0.966	UTR_3_PRIME CG43164 INTRON CG43164	TF binding site mE1_TFBS_cad
2L	1365944	2L_1365944_SNP [dm3] 2L_1365944_SNP [dm6]	G	A	2.512e^-4	0.966	INTERGENIC
2L	9298259	2L_9298259_SNP [dm3] 2L_9298259_SNP [dm6]	T	C	2.516e^-4	0.966	UTR_3_PRIME Ggamma30A
2R	14229503	2R_14229503_SNP [dm3] 2R_18341998_SNP [dm6]	A	T	2.518e^-4	0.966	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12248329	3R_12248329_SNP [dm3] 3R_16422607_SNP [dm6]	G	T	2.519e^-4	0.966	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
2L	4307627	2L_4307627_SNP [dm3] 2L_4307627_SNP [dm6]	T	C	2.526e^-4	0.966	SYNONYMOUS_CODING tutl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	18874413	2R_18874413_SNP [dm3] 2R_22986890_SNP [dm6]	A	C	2.533e^-4	0.966	UPSTREAM CG9897 DOWNSTREAM CR42742 INTRON twi
3R	13429301	3R_13429301_SNP [dm3] 3R_17603579_SNP [dm6]	T	A	2.535e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7283526	2L_7283526_SNP [dm3] 2L_7283526_SNP [dm6]	G	C	2.556e^-4	0.966	INTERGENIC
3L	7782090	3L_7782090_SNP [dm3] 3L_7788990_SNP [dm6]	G	A	2.573e^-4	0.966	INTRON CG32369
3L	7806620	3L_7806620_DEL [dm3] 3L_7813520_DEL [dm6]	TCTTTTTA	T	2.576e^-4	0.966	UTR_3_PRIME Pdp1 DOWNSTREAM Pdp1
2L	5258193	2L_5258193_SNP [dm3] 2L_5258193_SNP [dm6]	T	A	2.594e^-4	0.966	UPSTREAM CR44744 INTRON tkv
3L	10638117	3L_10638117_SNP [dm3] 3L_10645017_SNP [dm6]	T	A	2.601e^-4	0.966	DOWNSTREAM CG14153 INTRON CG32066
2L	1091372	2L_1091372_SNP [dm3] 2L_1091372_SNP [dm6]	T	C	2.605e^-4	0.966	INTRON CG4629
2L	7667098	2L_7667098_SNP [dm3] 2L_7667098_SNP [dm6]	C	T	2.607e^-4	0.966	INTRON Slob & 1 other
2L	10190110	2L_10190110_SNP [dm3] 2L_10190110_SNP [dm6]	C	T	2.608e^-4	0.966	NON_SYNONYMOUS_CODING CG31874 INTRON Sur	TF binding site mE1_TFBS_cad
X	22047781	X_22047781_SNP [dm3] X_22645945_SNP [dm6]	A	T	2.617e^-4	0.966	INTERGENIC	transposable element FlyBase
X	14157069	X_14157069_SNP [dm3] X_14263036_SNP [dm6]	A	G	2.622e^-4	0.966	INTRON CG1461
3R	3695948	3R_3695948_SNP [dm3] 3R_7870226_SNP [dm6]	A	G	2.627e^-4	0.966	SPLICE_SITE_REGION CG17816 INTRON CG17816
3L	2927577	3L_2927577_SNP [dm3] 3L_2927577_SNP [dm6]	C	T	2.629e^-4	0.966	INTRON Shab
2L	16575179	2L_16575179_SNP [dm3] 2L_16575179_SNP [dm6]	G	A	2.650e^-4	0.966	INTRON CG42389
2R	6147551	2R_6147551_SNP [dm3] 2R_10260046_SNP [dm6]	C	G	2.666e^-4	0.966	SYNONYMOUS_CODING CG12911 INTRON CG12911	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11590337	2R_11590337_SNP [dm3] 2R_15702832_SNP [dm6]	G	T	2.677e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7283550	2L_7283550_SNP [dm3] 2L_7283550_SNP [dm6]	G	C	2.680e^-4	0.966	INTERGENIC
X	22156541	X_22156541_SNP [dm3] X_22754705_SNP [dm6]	C	A	2.695e^-4	0.966	INTRON CR44997	transposable element FlyBase
2L	11148351	2L_11148351_SNP [dm3] 2L_11148351_SNP [dm6]	C	G	2.713e^-4	0.966	INTRON Gyc32E
3L	11334761	3L_11334761_SNP [dm3] 3L_11341661_SNP [dm6]	C	A	2.713e^-4	0.966	UPSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	12024890	X_12024890_SNP [dm3] X_12130857_SNP [dm6]	C	G	2.714e^-4	0.966	INTRON Ten-a
3R	19563521	3R_19563521_SNP [dm3] 3R_23737799_SNP [dm6]	A	G	2.715e^-4	0.966	INTRON Hmgcr
3R	25319921	3R_25319921_SNP [dm3] 3R_29494199_SNP [dm6]	C	T	2.717e^-4	0.966	SYNONYMOUS_CODING Diedel UPSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	25319961	3R_25319961_DEL [dm3] 3R_29494239_DEL [dm6]	CATAAA	C	2.717e^-4	0.966	UTR_3_PRIME Diedel UPSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	25319968	3R_25319968_DEL [dm3] 3R_29494246_DEL [dm6]	AATAAAGAGAAGCTT...	A	2.717e^-4	0.966	UTR_3_PRIME Diedel UPSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	25319986	3R_25319986_SNP [dm3] 3R_29494264_SNP [dm6]	T	A	2.717e^-4	0.966	UTR_3_PRIME Diedel UPSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	25319989	3R_25319989_DEL [dm3] 3R_29494267_DEL [dm6]	CATCCAGAAATTACTAAT...	C	2.717e^-4	0.966	UPSTREAM CG2310 & 1 other DOWNSTREAM Diedel INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	11616474	X_11616474_SNP [dm3] X_11722441_SNP [dm6]	G	A	2.720e^-4	0.966	INTRON Tango10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3793678	X_3793678_SNP [dm3] X_3899645_SNP [dm6]	A	G	2.724e^-4	0.966	INTRON CG42541
X	14789867	X_14789867_SNP [dm3] X_14895834_SNP [dm6]	T	G	2.728e^-4	0.966	SYNONYMOUS_CODING CG9514 INTRON Flo2
2L	12204811	2L_12204811_SNP [dm3] 2L_12204811_SNP [dm6]	C	A	2.730e^-4	0.966	INTRON aret
2L	18229217	2L_18229217_DEL [dm3] 2L_18229217_DEL [dm6]	GG	G	2.740e^-4	0.966	INTRON CG42750
2L	12424536	2L_12424536_SNP [dm3] 2L_12424536_SNP [dm6]	C	G	2.743e^-4	0.966	UPSTREAM CG6405 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
X	5610059	X_5610059_INS [dm3] X_5716026_INS [dm6]	A	AGTCGAA	2.744e^-4	0.966	UPSTREAM CG33080 INTRON CG33080
3L	14150519	3L_14150519_SNP [dm3] 3L_14157419_SNP [dm6]	T	A	2.744e^-4	0.966	INTERGENIC	regulatory region REDfly_CRMs
2L	12134409	2L_12134409_INS [dm3] 2L_12134409_INS [dm6]	T	CA	2.748e^-4	0.966	UPSTREAM rho-6 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	22295576	3R_22295576_SNP [dm3] 3R_26469854_SNP [dm6]	C	T	2.750e^-4	0.966	UTR_3_PRIME CG5455 DOWNSTREAM plum
2L	20245355	2L_20245355_SNP [dm3] 2L_20245355_SNP [dm6]	C	T	2.752e^-4	0.966	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13394932	2R_13394932_SNP [dm3] 2R_17507427_SNP [dm6]	C	A	2.753e^-4	0.966	UTR_3_PRIME CG43164 INTRON CG43164	TF binding site mE1_TFBS_cad
X	19968090	X_19968090_SNP [dm3] X_20074057_SNP [dm6]	G	C	2.766e^-4	0.966	INTERGENIC
3R	21594406	3R_21594406_SNP [dm3] 3R_25768684_SNP [dm6]	A	G	2.776e^-4	0.966	INTERGENIC
X	12134771	X_12134771_SNP [dm3] X_12240738_SNP [dm6]	T	A	2.777e^-4	0.966	INTRON Ten-a
X	12134785	X_12134785_SNP [dm3] X_12240752_SNP [dm6]	C	A	2.777e^-4	0.966	INTRON Ten-a
3L	14662356	3L_14662356_SNP [dm3] 3L_14669256_SNP [dm6]	C	T	2.786e^-4	0.966	INTRON dlp
X	22047836	X_22047836_SNP [dm3] X_22646000_SNP [dm6]	T	A	2.789e^-4	0.966	INTERGENIC
2L	9474805	2L_9474805_SNP [dm3] 2L_9474805_SNP [dm6]	T	C	2.790e^-4	0.966	INTERGENIC
3L	10625884	3L_10625884_SNP [dm3] 3L_10632784_SNP [dm6]	A	T	2.790e^-4	0.966	SYNONYMOUS_CODING hay INTRON CG34001	TF binding site mE1_TFBS_sens
2R	11310079	2R_11310079_SNP [dm3] 2R_15422574_SNP [dm6]	A	T	2.803e^-4	0.966	DOWNSTREAM CG30472 INTRON CG43729	TF binding site mE1_TFBS_chinmo
2L	12379370	2L_12379370_SNP [dm3] 2L_12379370_SNP [dm6]	C	T	2.805e^-4	0.966	INTRON bru-2
3L	18129931	3L_18129931_SNP [dm3] 3L_18136831_SNP [dm6]	C	T	2.805e^-4	0.966	UPSTREAM CR44669 INTERGENIC
2L	15832631	2L_15832631_SNP [dm3] 2L_15832631_SNP [dm6]	C	A	2.807e^-4	0.966	INTERGENIC
2L	20222495	2L_20222495_DEL [dm3] 2L_20222495_DEL [dm6]	TC	T	2.809e^-4	0.966	INTERGENIC	transposable element FlyBase
3L	18763635	3L_18763635_SNP [dm3] 3L_18770535_SNP [dm6]	G	A	2.809e^-4	0.966	INTRON ftz-f1
3L	14662348	3L_14662348_SNP [dm3] 3L_14669248_SNP [dm6]	C	T	2.813e^-4	0.966	INTRON dlp
3L	19502527	3L_19502527_SNP [dm3] 3L_19509427_SNP [dm6]	A	G	2.820e^-4	0.966	INTERGENIC
2R	9176252	2R_9176252_SNP [dm3] 2R_13288747_SNP [dm6]	C	T	2.837e^-4	0.966	INTRON Dh31-R
2L	1929519	2L_1929519_SNP [dm3] 2L_1929519_SNP [dm6]	C	T	2.853e^-4	0.966	INTRON CG7337
3R	9031133	3R_9031133_SNP [dm3] 3R_13205411_SNP [dm6]	G	T	2.857e^-4	0.966	INTERGENIC
X	12584927	X_12584927_SNP [dm3] X_12690894_SNP [dm6]	A	G	2.857e^-4	0.966	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9882815	3L_9882815_SNP [dm3] 3L_9889715_SNP [dm6]	C	T	2.868e^-4	0.966	SYNONYMOUS_CODING CalpB	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26185568	3R_26185568_SNP [dm3] 3R_30359846_SNP [dm6]	C	A	2.878e^-4	0.966	INTRON hdc	TF binding site mE1_TFBS_chinmo
2L	4426170	2L_4426170_INS [dm3] 2L_4426170_INS [dm6]	C	ACGGATG	2.880e^-4	0.966	INTRON CG15431
3L	9582917	3L_9582917_SNP [dm3] 3L_9589817_SNP [dm6]	A	T	2.885e^-4	0.966	INTRON CG42673
2L	12781404	2L_12781404_SNP [dm3] 2L_12781404_SNP [dm6]	T	C	2.887e^-4	0.966	INTERGENIC
2L	16410036	2L_16410036_SNP [dm3] 2L_16410036_SNP [dm6]	G	C	2.890e^-4	0.966	INTRON CG5888
3R	23757588	3R_23757588_SNP [dm3] 3R_27931866_SNP [dm6]	A	C	2.895e^-4	0.966	NON_SYNONYMOUS_CODING mino	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	866886	X_866886_SNP [dm3] X_972853_SNP [dm6]	T	C	2.897e^-4	0.966	INTERGENIC
X	22046003	X_22046003_SNP [dm3] X_22644167_SNP [dm6]	T	A	2.901e^-4	0.966	INTERGENIC
2L	21844412	2L_21844412_SNP [dm3] 2L_21844412_SNP [dm6]	G	T	2.903e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22046531	X_22046531_SNP [dm3] X_22644695_SNP [dm6]	C	A	2.911e^-4	0.966	INTERGENIC
2L	14957517	2L_14957517_SNP [dm3] 2L_14957517_SNP [dm6]	C	A	2.915e^-4	0.966	INTRON CG42313
3L	18571986	3L_18571986_SNP [dm3] 3L_18578886_SNP [dm6]	C	T	2.932e^-4	0.966	INTERGENIC
3L	13367204	3L_13367204_SNP [dm3] 3L_13374104_SNP [dm6]	A	G	2.934e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10308649	X_10308649_SNP [dm3] X_10414616_SNP [dm6]	C	T	2.943e^-4	0.966	INTRON CG32683
2R	19240968	2R_19240968_SNP [dm3] 2R_23353445_SNP [dm6]	C	T	2.947e^-4	0.966	UPSTREAM CG30409 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20165604	2L_20165604_SNP [dm3] 2L_20165604_SNP [dm6]	T	C	2.952e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4938630	X_4938630_SNP [dm3] X_5044597_SNP [dm6]	G	T	2.953e^-4	0.966	INTRON CR44833	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	4938638	X_4938638_SNP [dm3] X_5044605_SNP [dm6]	A	T	2.953e^-4	0.966	INTRON CR44833	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	4938639	X_4938639_SNP [dm3] X_5044606_SNP [dm6]	A	C	2.953e^-4	0.966	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	4938665	X_4938665_SNP [dm3] X_5044632_SNP [dm6]	C	T	2.953e^-4	0.966	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	14145724	3R_14145724_SNP [dm3] 3R_18320002_SNP [dm6]	A	C	2.969e^-4	0.966	INTRON CG31235
2R	16277480	2R_16277480_SNP [dm3] 2R_20389975_SNP [dm6]	G	T	2.970e^-4	0.966	INTERGENIC
2L	1785424	2L_1785424_SNP [dm3] 2L_1785424_SNP [dm6]	A	G	2.984e^-4	0.966	DOWNSTREAM Gr22e INTERGENIC
2R	16277479	2R_16277479_SNP [dm3] 2R_20389974_SNP [dm6]	A	G	2.991e^-4	0.966	INTERGENIC
3L	8273573	3L_8273573_SNP [dm3] 3L_8280473_SNP [dm6]	A	T	2.996e^-4	0.966	INTRON Dscam4
2L	9948113	2L_9948113_SNP [dm3] 2L_9948113_SNP [dm6]	A	T	3.004e^-4	0.966	UPSTREAM CG5853 INTERGENIC	TF binding site mE1_TFBS_inv
2L	15837626	2L_15837626_SNP [dm3] 2L_15837626_SNP [dm6]	C	A	3.026e^-4	0.966	UPSTREAM CR31822 INTERGENIC
3L	11390943	3L_11390943_SNP [dm3] 3L_11397843_SNP [dm6]	C	G	3.038e^-4	0.966	NON_SYNONYMOUS_CODING CG44362
2L	9948012	2L_9948012_SNP [dm3] 2L_9948012_SNP [dm6]	T	C	3.045e^-4	0.966	UPSTREAM CG5853 INTERGENIC
2R	10707907	2R_10707907_SNP [dm3] 2R_14820402_SNP [dm6]	T	G	3.046e^-4	0.966	UPSTREAM CG10202 INTERGENIC	TF binding site mE1_TFBS_Kr
3R	16811401	3R_16811401_SNP [dm3] 3R_20985679_SNP [dm6]	C	T	3.066e^-4	0.966	UPSTREAM Calx DOWNSTREAM CG43446 INTRON Calx
2L	15832611	2L_15832611_SNP [dm3] 2L_15832611_SNP [dm6]	C	A	3.072e^-4	0.966	INTERGENIC
2R	6572817	2R_6572817_SNP [dm3] 2R_10685312_SNP [dm6]	A	G	3.080e^-4	0.966	INTRON stan
3R	22427692	3R_22427692_SNP [dm3] 3R_26601970_SNP [dm6]	G	T	3.083e^-4	0.966	NON_SYNONYMOUS_CODING scrib INTRON scrib	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25702292	3R_25702292_SNP [dm3] 3R_29876570_SNP [dm6]	T	G	3.085e^-4	0.966	UPSTREAM CG31038 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_Trl
2R	12823232	2R_12823232_SNP [dm3] 2R_16935727_SNP [dm6]	G	A	3.088e^-4	0.966	INTRON Pkc53E
X	10307490	X_10307490_SNP [dm3] X_10413457_SNP [dm6]	A	T	3.088e^-4	0.966	SYNONYMOUS_CODING CG32683	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21062660	3L_21062660_SNP [dm3] 3L_21069560_SNP [dm6]	G	C	3.104e^-4	0.966	INTRON siz	TF binding site mE1_TFBS_D
2L	3010231	2L_3010231_SNP [dm3] 2L_3010231_SNP [dm6]	A	G	3.112e^-4	0.966	INTRON CG17265
3R	21178015	3R_21178015_SNP [dm3] 3R_25352293_SNP [dm6]	G	A	3.135e^-4	0.966	INTRON Fur1
3R	7950996	3R_7950996_SNP [dm3] 3R_12125274_SNP [dm6]	T	A	3.150e^-4	0.966	INTRON CG4702
3L	3338225	3L_3338225_SNP [dm3] 3L_3338225_SNP [dm6]	T	A	3.155e^-4	0.966	INTRON kst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25807306	3R_25807306_SNP [dm3] 3R_29981584_SNP [dm6]	G	C	3.163e^-4	0.966	INTERGENIC
2L	20233169	2L_20233169_SNP [dm3] 2L_20233169_SNP [dm6]	A	G	3.166e^-4	0.966	INTERGENIC
2R	17738039	2R_17738039_SNP [dm3] 2R_21850534_SNP [dm6]	A	T	3.172e^-4	0.966	INTERGENIC
2R	17738040	2R_17738040_SNP [dm3] 2R_21850535_SNP [dm6]	G	T	3.172e^-4	0.966	INTERGENIC
X	10308718	X_10308718_SNP [dm3] X_10414685_SNP [dm6]	G	A	3.178e^-4	0.966	INTRON CG32683
2R	6764274	2R_6764274_SNP [dm3] 2R_10876769_SNP [dm6]	G	A	3.180e^-4	0.966	SYNONYMOUS_CODING nclb DOWNSTREAM Taf5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11124727	3L_11124727_SNP [dm3] 3L_11131627_SNP [dm6]	T	A	3.181e^-4	0.966	DOWNSTREAM CG32074 & 1 other INTRON CG42575
2R	10207424	2R_10207424_SNP [dm3] 2R_14319919_SNP [dm6]	A	T	3.188e^-4	0.966	INTRON Shroom
X	13349715	X_13349715_SNP [dm3] X_13455682_SNP [dm6]	A	G	3.192e^-4	0.966	DOWNSTREAM CG34324 INTRON Neto
3R	19162698	3R_19162698_SNP [dm3] 3R_23336976_SNP [dm6]	G	A	3.193e^-4	0.966	INTRON pnt	TF binding site mE1_TFBS_inv
2R	5524275	2R_5524275_SNP [dm3] 2R_9636770_SNP [dm6]	G	T	3.197e^-4	0.966	DOWNSTREAM CR44070 INTRON Mmp2
2R	21005107	2R_21005107_DEL [dm3] 2R_25117584_DEL [dm6]	GATTTTTTG	G	3.199e^-4	0.966	INTRON lov
2L	3694085	2L_3694085_SNP [dm3] 2L_3694085_SNP [dm6]	A	C	3.210e^-4	0.966	UPSTREAM CG3513 & 1 other DOWNSTREAM CR43364 & 2 others INTERGENIC
X	21125406	X_21125406_SNP [dm3] X_21254379_SNP [dm6]	A	T	3.233e^-4	0.966	INTRON CG32521
3L	1489098	3L_1489098_SNP [dm3] 3L_1489098_SNP [dm6]	C	T	3.233e^-4	0.966	DOWNSTREAM CR43701 & 1 other INTRON stet	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7960714	3R_7960714_SNP [dm3] 3R_12134992_SNP [dm6]	C	T	3.234e^-4	0.966	INTERGENIC
3R	16639483	3R_16639483_SNP [dm3] 3R_20813761_SNP [dm6]	G	T	3.249e^-4	0.966	NON_SYNONYMOUS_CODING Fancd2
2L	20142313	2L_20142313_SNP [dm3] 2L_20142313_SNP [dm6]	G	C	3.260e^-4	0.966	INTERGENIC
2R	2077864	2R_2077864_SNP [dm3] 2R_6190359_SNP [dm6]	C	T	3.261e^-4	0.966	UPSTREAM tRNA:N5:42Ad & 1 other INTRON Ptr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
X	3091011	X_3091011_SNP [dm3] X_3196978_SNP [dm6]	T	C	3.262e^-4	0.966	INTRON dnc
2R	10707594	2R_10707594_SNP [dm3] 2R_14820089_SNP [dm6]	C	A	3.269e^-4	0.966	UPSTREAM CG10202 INTERGENIC
2R	10707795	2R_10707795_SNP [dm3] 2R_14820290_SNP [dm6]	G	A	3.269e^-4	0.966	UPSTREAM CG10202 INTERGENIC	TF binding site mE1_TFBS_Kr
2R	10707908	2R_10707908_SNP [dm3] 2R_14820403_SNP [dm6]	C	T	3.269e^-4	0.966	UPSTREAM CG10202 INTERGENIC	TF binding site mE1_TFBS_Kr
2L	15733661	2L_15733661_SNP [dm3] 2L_15733661_SNP [dm6]	G	T	3.269e^-4	0.966	INTRON CycE	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18687905	3L_18687905_SNP [dm3] 3L_18694805_SNP [dm6]	A	G	3.270e^-4	0.966	SYNONYMOUS_CODING CG6893 UPSTREAM CR43987
3L	13621920	3L_13621920_SNP [dm3] 3L_13628820_SNP [dm6]	C	G	3.274e^-4	0.966	INTRON bru-3
2R	12410063	2R_12410063_SNP [dm3] 2R_16522558_SNP [dm6]	C	T	3.277e^-4	0.966	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl
2R	15015922	2R_15015922_SNP [dm3] 2R_19128417_SNP [dm6]	C	T	3.312e^-4	0.966	UPSTREAM CG15117 INTRON CG15117
2L	16078609	2L_16078609_SNP [dm3] 2L_16078609_SNP [dm6]	G	A	3.315e^-4	0.966	INTRON beat-Ia
X	2775850	X_2775850_SNP [dm3] X_2881817_SNP [dm6]	G	A	3.326e^-4	0.966	DOWNSTREAM CG14418 INTRON kirre
3R	3269757	3R_3269757_SNP [dm3] 3R_7444035_SNP [dm6]	A	G	3.331e^-4	0.966	INTERGENIC
2L	7290191	2L_7290191_DEL [dm3] 2L_7290191_DEL [dm6]	TAT	T	3.336e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19563527	3R_19563527_SNP [dm3] 3R_23737805_SNP [dm6]	C	A	3.344e^-4	0.966	INTRON Hmgcr
2L	12135088	2L_12135088_SNP [dm3] 2L_12135088_SNP [dm6]	A	T	3.352e^-4	0.966	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	4135985	2L_4135985_SNP [dm3] 2L_4135985_SNP [dm6]	G	A	3.365e^-4	0.966	INTERGENIC
3R	13025874	3R_13025874_SNP [dm3] 3R_17200152_SNP [dm6]	G	T	3.377e^-4	0.966	INTRON Mur89F
2R	6539151	2R_6539151_SNP [dm3] 2R_10651646_SNP [dm6]	G	T	3.379e^-4	0.966	INTERGENIC
2L	16797811	2L_16797811_SNP [dm3] 2L_16797811_SNP [dm6]	T	C	3.385e^-4	0.966	SYNONYMOUS_CODING Ugt36Bb	TF binding site mE1_TFBS_sens
X	22047925	X_22047925_SNP [dm3] X_22646089_SNP [dm6]	C	T	3.386e^-4	0.966	INTERGENIC
2R	12475045	2R_12475045_SNP [dm3] 2R_16587540_SNP [dm6]	G	T	3.390e^-4	0.966	DOWNSTREAM RpLP2 INTRON CG8311	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7105503	3L_7105503_SNP [dm3] 3L_7112403_SNP [dm6]	C	T	3.396e^-4	0.966	INTRON form3
3R	25328960	3R_25328960_SNP [dm3] 3R_29503238_SNP [dm6]	C	T	3.403e^-4	0.966	UTR_5_PRIME Trc8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16022212	X_16022212_SNP [dm3] X_16128179_SNP [dm6]	T	G	3.407e^-4	0.966	INTRON disco-r
2L	12781139	2L_12781139_SNP [dm3] 2L_12781139_SNP [dm6]	T	G	3.409e^-4	0.966	INTERGENIC
X	21861423	X_21861423_INS [dm3] X_22459587_INS [dm6]	T	TT	3.411e^-4	0.966	INTRON CG14619	transposable element FlyBase
X	18722459	X_18722459_INS [dm3] X_18828426_INS [dm6]	A	AGCTGTAA	3.412e^-4	0.966	UTR_3_PRIME CG42450
2R	8298547	2R_8298547_SNP [dm3] 2R_12411042_SNP [dm6]	T	C	3.418e^-4	0.966	NON_SYNONYMOUS_CODING CG33627 DOWNSTREAM CG33626
X	8273128	X_8273128_SNP [dm3] X_8379095_SNP [dm6]	A	C	3.429e^-4	0.966	INTERGENIC
X	16902145	X_16902145_SNP [dm3] X_17008112_SNP [dm6]	G	C	3.444e^-4	0.966	INTRON CG45002
3L	8578189	3L_8578189_SNP [dm3] 3L_8585089_SNP [dm6]	C	T	3.449e^-4	0.966	UPSTREAM CG43078 INTRON CG43078
3R	7184560	3R_7184560_SNP [dm3] 3R_11358838_SNP [dm6]	G	A	3.454e^-4	0.966	INTRON pros
2L	16865302	2L_16865302_SNP [dm3] 2L_16865302_SNP [dm6]	T	G	3.471e^-4	0.966	INTERGENIC
2R	14700414	2R_14700414_SNP [dm3] 2R_18812909_SNP [dm6]	C	T	3.472e^-4	0.966	INTRON CG15096
3L	13373574	3L_13373574_SNP [dm3] 3L_13380474_SNP [dm6]	C	T	3.478e^-4	0.966	UTR_3_PRIME CG14107 DOWNSTREAM CG14111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16027858	3R_16027858_SNP [dm3] 3R_20202136_SNP [dm6]	C	T	3.480e^-4	0.966	INTERGENIC
2R	14414558	2R_14414558_SNP [dm3] 2R_18527053_SNP [dm6]	A	T	3.480e^-4	0.966	UPSTREAM CG10924 DOWNSTREAM CG43066 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	13711420	X_13711420_SNP [dm3] X_13817387_SNP [dm6]	A	G	3.481e^-4	0.966	INTRON Clic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17102767	2R_17102767_SNP [dm3] 2R_21215262_SNP [dm6]	T	C	3.492e^-4	0.966	UPSTREAM CG4302 DOWNSTREAM CG15661 INTERGENIC
X	19964820	X_19964820_SNP [dm3] X_20070787_SNP [dm6]	G	A	3.494e^-4	0.966	INTERGENIC
3R	24065608	3R_24065608_SNP [dm3] 3R_28239886_SNP [dm6]	G	T	3.494e^-4	0.966	UTR_3_PRIME CG34354 DOWNSTREAM CG34354
3R	24065609	3R_24065609_SNP [dm3] 3R_28239887_SNP [dm6]	T	G	3.494e^-4	0.966	UTR_3_PRIME CG34354 DOWNSTREAM CG34354
2L	1792099	2L_1792099_SNP [dm3] 2L_1792099_SNP [dm6]	C	G	3.499e^-4	0.966	SYNONYMOUS_CODING Gr22b UPSTREAM Gr22c	regulatory region REDfly_CRMs
X	4938708	X_4938708_SNP [dm3] X_5044675_SNP [dm6]	C	A	3.504e^-4	0.966	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	7284662	2L_7284662_SNP [dm3] 2L_7284662_SNP [dm6]	A	G	3.515e^-4	0.966	INTERGENIC
2L	7778845	2L_7778845_SNP [dm3] 2L_7778845_SNP [dm6]	C	T	3.519e^-4	0.966	UPSTREAM CG7179 INTERGENIC
3R	6456544	3R_6456544_SNP [dm3] 3R_10630822_SNP [dm6]	T	G	3.521e^-4	0.966	INTRON hth	TF binding site mE1_TFBS_cad
2L	12133535	2L_12133535_SNP [dm3] 2L_12133535_SNP [dm6]	G	A	3.525e^-4	0.966	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	10281384	X_10281384_SNP [dm3] X_10387351_SNP [dm6]	G	T	3.527e^-4	0.966	INTRON flw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11898957	X_11898957_SNP [dm3] X_12004924_SNP [dm6]	C	T	3.529e^-4	0.966	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	17077500	2L_17077500_SNP [dm3] 2L_17077500_SNP [dm6]	A	G	3.531e^-4	0.966	INTERGENIC
3R	9719155	3R_9719155_SNP [dm3] 3R_13893433_SNP [dm6]	C	T	3.533e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10226271	X_10226271_SNP [dm3] X_10332238_SNP [dm6]	G	T	3.534e^-4	0.966	UPSTREAM CG15306 INTERGENIC
2R	17940442	2R_17940442_SNP [dm3] 2R_22052937_SNP [dm6]	C	A	3.535e^-4	0.966	INTERGENIC
2L	16800497	2L_16800497_SNP [dm3] 2L_16800497_SNP [dm6]	T	C	3.550e^-4	0.966	SYNONYMOUS_CODING Ugt36Bc
2L	18953753	2L_18953753_SNP [dm3] 2L_18953753_SNP [dm6]	G	T	3.561e^-4	0.966	UTR_5_PRIME CG10621 UPSTREAM CR44741 INTRON CG10621	TF binding site mE1_TFBS_cad
2L	12567174	2L_12567174_SNP [dm3] 2L_12567174_SNP [dm6]	A	G	3.566e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16022163	X_16022163_SNP [dm3] X_16128130_SNP [dm6]	A	C	3.572e^-4	0.966	INTRON disco-r
X	16022175	X_16022175_SNP [dm3] X_16128142_SNP [dm6]	C	T	3.572e^-4	0.966	INTRON disco-r
X	6727878	X_6727878_SNP [dm3] X_6833845_SNP [dm6]	C	T	3.575e^-4	0.966	INTRON nonC
X	15584937	X_15584937_SNP [dm3] X_15690904_SNP [dm6]	T	C	3.575e^-4	0.966	NON_SYNONYMOUS_CODING CG43132 UPSTREAM CR45523	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	16598227	2L_16598227_SNP [dm3] 2L_16598227_SNP [dm6]	G	T	3.579e^-4	0.966	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	3301053	X_3301053_INS [dm3] X_3407020_INS [dm6]	A	AAA	3.585e^-4	0.966	INTRON CR44999 & 1 other
2L	5584634	2L_5584634_SNP [dm3] 2L_5584634_SNP [dm6]	C	T	3.587e^-4	0.966	INTERGENIC
3R	24577238	3R_24577238_SNP [dm3] 3R_28751516_SNP [dm6]	T	A	3.589e^-4	0.966	SYNONYMOUS_CODING CG10000
X	7105263	X_7105263_SNP [dm3] X_7211230_SNP [dm6]	C	A	3.613e^-4	0.966	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	8095823	X_8095823_SNP [dm3] X_8201790_SNP [dm6]	A	C	3.649e^-4	0.966	INTRON sdt
3L	13419717	3L_13419717_SNP [dm3] 3L_13426617_SNP [dm6]	G	T	3.655e^-4	0.966	NON_SYNONYMOUS_CODING CG14105 UPSTREAM CG14106
3L	3598724	3L_3598724_DEL [dm3] 3L_3598724_DEL [dm6]	CT	C	3.655e^-4	0.966	INTRON Eip63E	TF binding site mE1_TFBS_cad
2R	11037961	2R_11037961_SNP [dm3] 2R_15150456_SNP [dm6]	A	T	3.663e^-4	0.966	DOWNSTREAM CG7544 INTERGENIC
2L	12781136	2L_12781136_SNP [dm3] 2L_12781136_SNP [dm6]	A	G	3.672e^-4	0.966	INTERGENIC
3L	15089954	3L_15089954_SNP [dm3] 3L_15096854_SNP [dm6]	A	C	3.677e^-4	0.966	SYNONYMOUS_CODING Aats-gly	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2390769	2L_2390769_SNP [dm3] 2L_2390769_SNP [dm6]	A	C	3.680e^-4	0.966	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2L	6118068	2L_6118068_SNP [dm3] 2L_6118068_SNP [dm6]	A	T	3.685e^-4	0.966	UPSTREAM CG31642 INTRON stai
2L	20224034	2L_20224034_INS [dm3] 2L_20224034_INS [dm6]	T	TC	3.685e^-4	0.966	INTERGENIC
2L	20234237	2L_20234237_DEL [dm3] 2L_20234237_DEL [dm6]	TT	T	3.685e^-4	0.966	INTERGENIC
3R	26463994	3R_26463994_SNP [dm3] 3R_30638272_SNP [dm6]	G	T	3.691e^-4	0.966	INTERGENIC
2L	20233180	2L_20233180_SNP [dm3] 2L_20233180_SNP [dm6]	T	A	3.692e^-4	0.966	INTERGENIC
3L	9582874	3L_9582874_SNP [dm3] 3L_9589774_SNP [dm6]	T	A	3.706e^-4	0.966	INTRON CG42673
2L	20551484	2L_20551484_SNP [dm3] 2L_20551484_SNP [dm6]	T	C	3.710e^-4	0.966	INTERGENIC
2L	12567172	2L_12567172_SNP [dm3] 2L_12567172_SNP [dm6]	C	T	3.710e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13340857	X_13340857_DEL [dm3] X_13446824_DEL [dm6]	TA	T	3.715e^-4	0.966	INTRON Neto	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20222456	2L_20222456_INS [dm3] 2L_20222456_INS [dm6]	A	AGA	3.721e^-4	0.966	INTERGENIC	transposable element FlyBase
2L	6118069	2L_6118069_SNP [dm3] 2L_6118069_SNP [dm6]	A	G	3.722e^-4	0.966	UPSTREAM CG31642 INTRON stai
2L	6118070	2L_6118070_DEL [dm3] 2L_6118070_DEL [dm6]	GT	G	3.722e^-4	0.966	UPSTREAM CG31642 INTRON stai
2R	10160334	2R_10160334_SNP [dm3] 2R_14272829_SNP [dm6]	C	T	3.731e^-4	0.966	SYNONYMOUS_CODING conv
2R	4560768	2R_4560768_SNP [dm3] 2R_8673263_SNP [dm6]	T	A	3.738e^-4	0.966	INTRON Acsl
2R	15918429	2R_15918429_SNP [dm3] 2R_20030924_SNP [dm6]	G	T	3.740e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19968123	X_19968123_SNP [dm3] X_20074090_SNP [dm6]	T	G	3.742e^-4	0.966	INTERGENIC
2R	5494844	2R_5494844_SNP [dm3] 2R_9607339_SNP [dm6]	G	T	3.743e^-4	0.966	UTR_5_PRIME GstT2 DOWNSTREAM CG12926 & 1 other
2R	1186717	2R_1186717_SNP [dm3] 2R_5299212_SNP [dm6]	T	G	3.750e^-4	0.966	INTERGENIC
2R	14715878	2R_14715878_SNP [dm3] 2R_18828373_SNP [dm6]	T	C	3.750e^-4	0.966	INTRON CG15097
2L	15730910	2L_15730910_DEL [dm3] 2L_15730910_DEL [dm6]	AGTAGACAATC...	A	3.750e^-4	0.966	INTRON CycE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	9837314	3L_9837314_SNP [dm3] 3L_9844214_SNP [dm6]	G	A	3.765e^-4	0.966	SYNONYMOUS_CODING RasGAP1	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_HSA
3R	22503130	3R_22503130_INS [dm3] 3R_26677408_INS [dm6]	C	CC	3.771e^-4	0.966	INTRON beat-VII
2L	21024990	2L_21024990_SNP [dm3] 2L_21024990_SNP [dm6]	G	A	3.775e^-4	0.966	INTRON CG42238	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	18656611	3R_18656611_SNP [dm3] 3R_22830889_SNP [dm6]	T	C	3.786e^-4	0.966	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10210238	2R_10210238_SNP [dm3] 2R_14322733_SNP [dm6]	A	C	3.794e^-4	0.966	INTRON Shroom	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	20230589	2L_20230589_DEL [dm3] 2L_20230589_DEL [dm6]	AA	A	3.795e^-4	0.966	INTERGENIC
X	2412147	X_2412147_SNP [dm3] X_2518114_SNP [dm6]	C	T	3.795e^-4	0.966	UTR_5_PRIME trol INTRON trol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13427407	3R_13427407_SNP [dm3] 3R_17601685_SNP [dm6]	T	C	3.811e^-4	0.966	INTERGENIC
2L	5584062	2L_5584062_SNP [dm3] 2L_5584062_SNP [dm6]	A	G	3.815e^-4	0.966	INTERGENIC
3L	16059776	3L_16059776_SNP [dm3] 3L_16066676_SNP [dm6]	T	C	3.816e^-4	0.966	SYNONYMOUS_CODING Mbs UTR_3_PRIME Mbs
2R	13798330	2R_13798330_SNP [dm3] 2R_17910825_SNP [dm6]	C	T	3.822e^-4	0.966	INTRON Elk
2R	16708203	2R_16708203_SNP [dm3] 2R_20820698_SNP [dm6]	C	G	3.829e^-4	0.966	DOWNSTREAM insc INTERGENIC
3R	7958293	3R_7958293_SNP [dm3] 3R_12132571_SNP [dm6]	T	A	3.831e^-4	0.966	INTERGENIC
2L	20546987	2L_20546987_SNP [dm3] 2L_20546987_SNP [dm6]	A	G	3.839e^-4	0.966	INTERGENIC
2L	12133756	2L_12133756_SNP [dm3] 2L_12133756_SNP [dm6]	A	G	3.854e^-4	0.966	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	6730918	2R_6730918_SNP [dm3] 2R_10843413_SNP [dm6]	T	C	3.858e^-4	0.966	SYNONYMOUS_CODING CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	1868790	3L_1868790_SNP [dm3] 3L_1868790_SNP [dm6]	A	C	3.864e^-4	0.966	UTR_3_PRIME CG12025 DOWNSTREAM CG12025
2R	17061403	2R_17061403_SNP [dm3] 2R_21173898_SNP [dm6]	G	A	3.875e^-4	0.966	SYNONYMOUS_CODING Xpd	TF binding site mE1_TFBS_cad
2L	20528103	2L_20528103_SNP [dm3] 2L_20528103_SNP [dm6]	C	T	3.878e^-4	0.966	INTERGENIC
X	2769540	X_2769540_SNP [dm3] X_2875507_SNP [dm6]	C	T	3.886e^-4	0.966	UTR_3_PRIME CG14417 INTRON kirre
2R	1351589	2R_1351589_SNP [dm3] 2R_5464084_SNP [dm6]	G	A	3.887e^-4	0.966	INTERGENIC	transposable element FlyBase
X	16022144	X_16022144_INS [dm3] X_16128111_INS [dm6]	A	ACGTAAAA	3.896e^-4	0.966	INTRON disco-r
2R	12251797	2R_12251797_SNP [dm3] 2R_16364292_SNP [dm6]	A	C	3.897e^-4	0.966	UTR_5_PRIME CG15711 DOWNSTREAM CG6262
2L	15176639	2L_15176639_SNP [dm3] 2L_15176639_SNP [dm6]	G	A	3.902e^-4	0.966	INTRON CG4168
3L	7524906	3L_7524906_SNP [dm3] 3L_7531806_SNP [dm6]	A	T	3.903e^-4	0.966	UPSTREAM lqf INTRON lqf
X	8421538	X_8421538_SNP [dm3] X_8527505_SNP [dm6]	T	C	3.911e^-4	0.966	NON_SYNONYMOUS_CODING PIP82 INTRON Nrg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1866960	3L_1866960_SNP [dm3] 3L_1866960_SNP [dm6]	G	A	3.914e^-4	0.966	INTRON CG12025	TF binding site BDTNP1_TFBS_twi
2L	5584926	2L_5584926_SNP [dm3] 2L_5584926_SNP [dm6]	T	C	3.916e^-4	0.966	INTERGENIC
3R	13871627	3R_13871627_SNP [dm3] 3R_18045905_SNP [dm6]	A	G	3.921e^-4	0.966	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_sens
X	6091320	X_6091320_SNP [dm3] X_6197287_SNP [dm6]	A	G	3.924e^-4	0.966	SYNONYMOUS_CODING CG32751 UPSTREAM CG32750
2L	16943335	2L_16943335_SNP [dm3] 2L_16943335_SNP [dm6]	T	G	3.927e^-4	0.966	INTERGENIC
3R	19172897	3R_19172897_DEL [dm3] 3R_23347175_DEL [dm6]	GT	G	3.928e^-4	0.966	UPSTREAM DNApol-epsilon INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	12134377	2L_12134377_SNP [dm3] 2L_12134377_SNP [dm6]	A	G	3.929e^-4	0.966	UPSTREAM rho-6 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	3557484	2L_3557484_SNP [dm3] 2L_3557484_SNP [dm6]	C	G	3.934e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	1168259	2R_1168259_SNP [dm3] 2R_5280754_SNP [dm6]	G	A	3.934e^-4	0.966	INTRON d4	transposable element FlyBase
2L	3964524	2L_3964524_SNP [dm3] 2L_3964524_SNP [dm6]	G	A	3.942e^-4	0.966	INTRON fred
2R	5189210	2R_5189210_SNP [dm3] 2R_9301705_SNP [dm6]	G	A	3.943e^-4	0.966	UTR_3_PRIME Drep-2
3L	1871936	3L_1871936_SNP [dm3] 3L_1871936_SNP [dm6]	A	G	3.947e^-4	0.966	DOWNSTREAM CG13924 INTRON dre4
2L	21024805	2L_21024805_SNP [dm3] 2L_21024805_SNP [dm6]	T	A	3.958e^-4	0.966	INTRON CG42238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	9540575	2R_9540575_SNP [dm3] 2R_13653070_SNP [dm6]	G	C	3.963e^-4	0.966	INTRON fas	TF binding site BDTNP1_TFBS_twi
X	19964630	X_19964630_SNP [dm3] X_20070597_SNP [dm6]	G	A	3.964e^-4	0.966	INTERGENIC
3L	10703733	3L_10703733_DEL [dm3] 3L_10710633_DEL [dm6]	AA	A	3.970e^-4	0.966	INTERGENIC
2L	18231648	2L_18231648_SNP [dm3] 2L_18231648_SNP [dm6]	C	T	3.976e^-4	0.966	INTRON CG42750
2L	6118023	2L_6118023_SNP [dm3] 2L_6118023_SNP [dm6]	G	T	3.976e^-4	0.966	UPSTREAM CG31642 INTRON stai
2L	18423038	2L_18423038_SNP [dm3] 2L_18423038_SNP [dm6]	G	C	3.977e^-4	0.966	INTERGENIC
3R	8683394	3R_8683394_SNP [dm3] 3R_12857672_SNP [dm6]	G	A	3.978e^-4	0.966	UPSTREAM CG10126 INTRON CG10126
2L	5618676	2L_5618676_SNP [dm3] 2L_5618676_SNP [dm6]	C	G	3.978e^-4	0.966	UPSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15278829	2R_15278829_SNP [dm3] 2R_19391324_SNP [dm6]	C	A	3.982e^-4	0.966	NON_SYNONYMOUS_CODING CG11257 DOWNSTREAM SdhA	TF binding site mE1_TFBS_sens
2L	5584311	2L_5584311_SNP [dm3] 2L_5584311_SNP [dm6]	C	T	3.996e^-4	0.966	INTERGENIC
2R	18595084	2R_18595084_SNP [dm3] 2R_22707579_SNP [dm6]	T	C	4.000e^-4	0.966	SYNONYMOUS_CODING Obp58d UPSTREAM Obp58c & 1 other DOWNSTREAM CR43735
3L	9086462	3L_9086462_SNP [dm3] 3L_9093362_SNP [dm6]	C	T	4.004e^-4	0.966	INTRON CG32032
2R	6147473	2R_6147473_SNP [dm3] 2R_10259968_SNP [dm6]	A	T	4.006e^-4	0.966	INTRON CG12911	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6147566	2R_6147566_SNP [dm3] 2R_10260061_SNP [dm6]	C	T	4.006e^-4	0.966	SYNONYMOUS_CODING CG12911 INTRON CG12911	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18679681	3R_18679681_SNP [dm3] 3R_22853959_SNP [dm6]	G	A	4.008e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13782927	2R_13782927_SNP [dm3] 2R_17895422_SNP [dm6]	C	T	4.015e^-4	0.966	SYNONYMOUS_CODING CG14491 INTRON Elk	TF binding site BDTNP1_TFBS_twi
2L	19817762	2L_19817762_SNP [dm3] 2L_19817762_SNP [dm6]	A	T	4.019e^-4	0.966	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2R	8372237	2R_8372237_SNP [dm3] 2R_12484732_SNP [dm6]	C	A	4.021e^-4	0.966	NON_SYNONYMOUS_CODING Dh44-R2
3L	5099636	3L_5099636_SNP [dm3] 3L_5099636_SNP [dm6]	T	C	4.024e^-4	0.966	EXON CR34047
X	8979861	X_8979861_INS [dm3] X_9085828_INS [dm6]	C	CTCAC	4.037e^-4	0.966	UTR_3_PRIME APC4 UPSTREAM CG32708	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	8313070	2R_8313070_SNP [dm3] 2R_12425565_SNP [dm6]	T	C	4.039e^-4	0.966	UTR_5_PRIME CG8525 UPSTREAM CG8525 DOWNSTREAM CG8520	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14747705	3L_14747705_SNP [dm3] 3L_14754605_SNP [dm6]	G	T	4.039e^-4	0.966	INTRON Trl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2R	7077533	2R_7077533_SNP [dm3] 2R_11190028_SNP [dm6]	T	C	4.043e^-4	0.966	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	21497142	3R_21497142_SNP [dm3] 3R_25671420_SNP [dm6]	T	A	4.050e^-4	0.966	INTRON Lgr3
3L	1866923	3L_1866923_SNP [dm3] 3L_1866923_SNP [dm6]	T	C	4.051e^-4	0.966	INTRON CG12025	TF binding site BDTNP1_TFBS_twi
2L	6118307	2L_6118307_SNP [dm3] 2L_6118307_SNP [dm6]	A	C	4.054e^-4	0.966	UPSTREAM CG31642 INTRON stai
X	3351938	X_3351938_SNP [dm3] X_3457905_SNP [dm6]	C	T	4.056e^-4	0.966	INTRON CR44999
3L	24240990	3L_24240990_SNP [dm3] 3L_24247890_SNP [dm6]	C	A	4.060e^-4	0.966	INTRON Snap25
2R	6732910	2R_6732910_SNP [dm3] 2R_10845405_SNP [dm6]	C	T	4.073e^-4	0.966	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25511106	3R_25511106_SNP [dm3] 3R_29685384_SNP [dm6]	T	C	4.076e^-4	0.966	DOWNSTREAM Obp99c INTRON Gycalpha99B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19961291	X_19961291_SNP [dm3] X_20067258_SNP [dm6]	A	G	4.076e^-4	0.966	INTERGENIC
X	13349699	X_13349699_SNP [dm3] X_13455666_SNP [dm6]	C	G	4.093e^-4	0.966	DOWNSTREAM CG34324 INTRON Neto
3L	8800690	3L_8800690_INS [dm3] 3L_8807590_INS [dm6]	G	TC	4.093e^-4	0.966	UPSTREAM CG32024 & 2 others INTERGENIC
X	11369139	X_11369139_SNP [dm3] X_11475106_SNP [dm6]	T	A	4.099e^-4	0.966	INTRON CG43155
3L	17882415	3L_17882415_SNP [dm3] 3L_17889315_SNP [dm6]	T	C	4.105e^-4	0.966	INTRON CG7402
2R	6147755	2R_6147755_SNP [dm3] 2R_10260250_SNP [dm6]	T	G	4.107e^-4	0.966	NON_SYNONYMOUS_CODING CG12911 INTRON CG12911	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	19921853	2L_19921853_SNP [dm3] 2L_19921853_SNP [dm6]	G	A	4.116e^-4	0.966	INTRON sick EXON CR43828
2L	19922081	2L_19922081_SNP [dm3] 2L_19922081_SNP [dm6]	G	C	4.116e^-4	0.966	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
2L	19922331	2L_19922331_SNP [dm3] 2L_19922331_SNP [dm6]	C	T	4.116e^-4	0.966	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
2L	21105076	2L_21105076_SNP [dm3] 2L_21105076_SNP [dm6]	G	A	4.129e^-4	0.966	UPSTREAM CR43809 DOWNSTREAM CG9257 INTRON Nhe2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17580000	3L_17580000_SNP [dm3] 3L_17586900_SNP [dm6]	T	A	4.138e^-4	0.966	INTRON Eip74EF
2R	6771014	2R_6771014_SNP [dm3] 2R_10883509_SNP [dm6]	T	C	4.141e^-4	0.966	UPSTREAM CG18003 DOWNSTREAM Pex6 INTERGENIC
X	13820450	X_13820450_SNP [dm3] X_13926417_SNP [dm6]	G	A	4.150e^-4	0.966	INTRON mamo
2L	11075466	2L_11075466_DEL [dm3] 2L_11075466_DEL [dm6]	CA	C	4.160e^-4	0.966	UPSTREAM CG43725 & 1 other DOWNSTREAM AstC INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	22156741	X_22156741_SNP [dm3] X_22754905_SNP [dm6]	T	C	4.168e^-4	0.966	INTRON CR44997	transposable element FlyBase
2L	11681831	2L_11681831_SNP [dm3] 2L_11681831_SNP [dm6]	G	A	4.181e^-4	0.966	INTERGENIC
2L	5542682	2L_5542682_DEL [dm3] 2L_5542682_DEL [dm6]	GAG	TT	4.188e^-4	0.966	UPSTREAM Lam & 1 other INTRON Lam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	10173710	X_10173710_SNP [dm3] X_10279677_SNP [dm6]	T	G	4.191e^-4	0.966	INTRON alpha-Man-I
2L	8143732	2L_8143732_SNP [dm3] 2L_8143732_SNP [dm6]	T	G	4.193e^-4	0.966	NON_SYNONYMOUS_CODING CG42762 DOWNSTREAM CG42763 INTRON CG8552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5976100	X_5976100_SNP [dm3] X_6082067_SNP [dm6]	A	T	4.194e^-4	0.966	UPSTREAM CG4660 DOWNSTREAM raptor & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19922326	2L_19922326_SNP [dm3] 2L_19922326_SNP [dm6]	C	T	4.195e^-4	0.966	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
2L	6781883	2L_6781883_SNP [dm3] 2L_6781883_SNP [dm6]	T	C	4.196e^-4	0.966	INTRON nrv1
2L	5578351	2L_5578351_SNP [dm3] 2L_5578351_SNP [dm6]	G	A	4.206e^-4	0.966	INTERGENIC
2L	5578353	2L_5578353_SNP [dm3] 2L_5578353_SNP [dm6]	A	G	4.206e^-4	0.966	INTERGENIC
3L	13234417	3L_13234417_SNP [dm3] 3L_13241317_SNP [dm6]	A	G	4.211e^-4	0.966	INTRON caps
2L	21947690	2L_21947690_INS [dm3] 2L_21947690_INS [dm6]	G	GA	4.221e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16022149	X_16022149_SNP [dm3] X_16128116_SNP [dm6]	T	A	4.223e^-4	0.966	INTRON disco-r
X	22251946	X_22251946_SNP [dm3] X_22850110_SNP [dm6]	C	T	4.226e^-4	0.966	INTRON fog & 1 other
3L	9248767	3L_9248767_SNP [dm3] 3L_9255667_SNP [dm6]	A	T	4.229e^-4	0.966	INTRON GluRIB
2R	2054047	2R_2054047_SNP [dm3] 2R_6166542_SNP [dm6]	T	G	4.246e^-4	0.966	DOWNSTREAM tRNA:K2:42Aa & 1 other INTRON EcR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4306024	X_4306024_SNP [dm3] X_4411991_SNP [dm6]	G	A	4.250e^-4	0.966	UPSTREAM bi INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
X	4306948	X_4306948_INS [dm3] X_4412915_INS [dm6]	A	AA	4.250e^-4	0.966	UTR_5_PRIME bi UPSTREAM bi INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16705902	2R_16705902_SNP [dm3] 2R_20818397_SNP [dm6]	G	A	4.257e^-4	0.966	INTERGENIC
2R	16706234	2R_16706234_SNP [dm3] 2R_20818729_SNP [dm6]	G	A	4.257e^-4	0.966	INTERGENIC
3R	5213788	3R_5213788_SNP [dm3] 3R_9388066_SNP [dm6]	A	T	4.262e^-4	0.966	INTRON FER
X	5610060	X_5610060_DEL [dm3] X_5716027_DEL [dm6]	ATTTAT	A	4.264e^-4	0.966	UPSTREAM CG33080 INTRON CG33080
3R	3548958	3R_3548958_SNP [dm3] 3R_7723236_SNP [dm6]	C	A	4.269e^-4	0.966	INTRON CG2616
2L	9874384	2L_9874384_SNP [dm3] 2L_9874384_SNP [dm6]	G	T	4.270e^-4	0.966	INTRON nAChRalpha6
3L	705373	3L_705373_SNP [dm3] 3L_705373_SNP [dm6]	C	T	4.273e^-4	0.966	DOWNSTREAM CG13895 EXON CR44514
2R	16705987	2R_16705987_SNP [dm3] 2R_20818482_SNP [dm6]	C	A	4.274e^-4	0.966	INTERGENIC
X	7706782	X_7706782_SNP [dm3] X_7812749_SNP [dm6]	G	T	4.278e^-4	0.966	INTERGENIC
3L	6276834	3L_6276834_SNP [dm3] 3L_6283734_SNP [dm6]	G	A	4.284e^-4	0.966	INTERGENIC
3R	7140107	3R_7140107_SNP [dm3] 3R_11314385_SNP [dm6]	A	C	4.286e^-4	0.966	INTERGENIC
2R	16616856	2R_16616856_DEL [dm3] 2R_20729351_DEL [dm6]	GACGGGCGTGGCAGAGTGG...	G	4.289e^-4	0.966	INTRON dpr & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6489144	X_6489144_SNP [dm3] X_6595111_SNP [dm6]	T	A	4.298e^-4	0.966	SYNONYMOUS_CODING Pat1	TF binding site mE1_TFBS_HSA
X	9090609	X_9090609_SNP [dm3] X_9196576_SNP [dm6]	A	T	4.302e^-4	0.966	UPSTREAM CG12118 DOWNSTREAM su_r_ INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12950168	2L_12950168_SNP [dm3] 2L_12950168_SNP [dm6]	T	C	4.302e^-4	0.966	INTERGENIC
2L	9213179	2L_9213179_SNP [dm3] 2L_9213179_SNP [dm6]	G	C	4.303e^-4	0.966	INTRON tai
2L	7580502	2L_7580502_SNP [dm3] 2L_7580502_SNP [dm6]	T	G	4.313e^-4	0.966	INTERGENIC
2L	1785888	2L_1785888_SNP [dm3] 2L_1785888_SNP [dm6]	A	C	4.327e^-4	0.966	DOWNSTREAM Gr22e INTERGENIC
2L	1785984	2L_1785984_DEL [dm3] 2L_1785984_DEL [dm6]	TTTTATAA	T	4.327e^-4	0.966	DOWNSTREAM Gr22e INTERGENIC
2L	1786123	2L_1786123_DEL [dm3] 2L_1786123_DEL [dm6]	GACATCCAATCGTTT...	C	4.327e^-4	0.966	DOWNSTREAM Gr22e INTERGENIC
2L	3713492	2L_3713492_SNP [dm3] 2L_3713492_SNP [dm6]	G	A	4.327e^-4	0.966	UTR_5_PRIME CG2818 UPSTREAM CG31955 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	20928677	3R_20928677_SNP [dm3] 3R_25102955_SNP [dm6]	C	G	4.331e^-4	0.966	NON_SYNONYMOUS_CODING CG45095 DOWNSTREAM CG33095 & 2 others
2R	7077540	2R_7077540_SNP [dm3] 2R_11190035_SNP [dm6]	T	C	4.355e^-4	0.966	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	10308579	X_10308579_SNP [dm3] X_10414546_SNP [dm6]	T	C	4.358e^-4	0.966	INTRON CG32683
X	22045489	X_22045489_SNP [dm3] X_22643653_SNP [dm6]	C	T	4.367e^-4	0.966	INTERGENIC
X	17128475	X_17128475_SNP [dm3] X_17234442_SNP [dm6]	G	A	4.376e^-4	0.966	INTRON f	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12080787	3L_12080787_SNP [dm3] 3L_12087687_SNP [dm6]	G	A	4.392e^-4	0.966	UPSTREAM CG17154 INTERGENIC
X	4247326	X_4247326_INS [dm3] X_4353293_INS [dm6]	C	CAAGCCTTGATTAATGATGC...	4.394e^-4	0.966	INTRON norpA
3L	4484576	3L_4484576_SNP [dm3] 3L_4484576_SNP [dm6]	A	G	4.395e^-4	0.966	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	9927652	2L_9927652_SNP [dm3] 2L_9927652_SNP [dm6]	A	T	4.398e^-4	0.966	SYNONYMOUS_CODING CG42366	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16834778	2R_16834778_SNP [dm3] 2R_20947273_SNP [dm6]	C	T	4.407e^-4	0.966	DOWNSTREAM Act57B INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	16838903	2R_16838903_SNP [dm3] 2R_20951398_SNP [dm6]	C	A	4.407e^-4	0.966	DOWNSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18230006	2L_18230006_SNP [dm3] 2L_18230006_SNP [dm6]	C	T	4.411e^-4	0.966	INTRON CG42750
2R	4939165	2R_4939165_SNP [dm3] 2R_9051660_SNP [dm6]	G	C	4.412e^-4	0.966	INTRON CG13743
3L	14160582	3L_14160582_DEL [dm3] 3L_14167482_DEL [dm6]	TCACT	T	4.421e^-4	0.966	INTERGENIC	regulatory region REDfly_CRMs
X	6810650	X_6810650_SNP [dm3] X_6916617_SNP [dm6]	G	A	4.423e^-4	0.966	INTRON CG14431
2L	16935971	2L_16935971_SNP [dm3] 2L_16935971_SNP [dm6]	T	C	4.425e^-4	0.966	INTERGENIC
3L	20276987	3L_20276987_SNP [dm3] 3L_20283887_SNP [dm6]	G	A	4.428e^-4	0.966	INTRON gogo	transposable element FlyBase
3R	13217605	3R_13217605_SNP [dm3] 3R_17391883_SNP [dm6]	C	A	4.435e^-4	0.966	SPLICE_SITE_REGION CR44160 UTR_5_PRIME sds22 UPSTREAM Brf EXON CR44160	TF binding site mE1_TFBS_HSA
2R	17714502	2R_17714502_SNP [dm3] 2R_21826997_SNP [dm6]	G	T	4.439e^-4	0.966	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10609610	2L_10609610_SNP [dm3] 2L_10609610_SNP [dm6]	A	G	4.444e^-4	0.966	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20551497	2L_20551497_SNP [dm3] 2L_20551497_SNP [dm6]	C	T	4.448e^-4	0.966	INTERGENIC
2L	6108196	2L_6108196_SNP [dm3] 2L_6108196_SNP [dm6]	C	G	4.455e^-4	0.966	INTRON stai
2L	7675857	2L_7675857_SNP [dm3] 2L_7675857_SNP [dm6]	C	A	4.456e^-4	0.966	UPSTREAM Slob INTRON Myo28B1
2L	3314239	2L_3314239_SNP [dm3] 2L_3314239_SNP [dm6]	C	G	4.457e^-4	0.966	INTRON CG3277
3R	22072970	3R_22072970_SNP [dm3] 3R_26247248_SNP [dm6]	G	C	4.458e^-4	0.966	INTRON CR42745
3R	10993555	3R_10993555_SNP [dm3] 3R_15167833_SNP [dm6]	G	A	4.463e^-4	0.966	INTRON Gyc88E
2R	19046069	2R_19046069_SNP [dm3] 2R_23158546_SNP [dm6]	G	A	4.472e^-4	0.966	UPSTREAM CG13545 INTRON CG9899
2R	2143549	2R_2143549_SNP [dm3] 2R_6256044_SNP [dm6]	G	A	4.476e^-4	0.966	DOWNSTREAM Pld INTERGENIC	transposable element FlyBase
2L	6118299	2L_6118299_SNP [dm3] 2L_6118299_SNP [dm6]	T	A	4.481e^-4	0.966	UPSTREAM CG31642 INTRON stai
X	7706767	X_7706767_SNP [dm3] X_7812734_SNP [dm6]	T	G	4.483e^-4	0.966	INTERGENIC
X	11616449	X_11616449_SNP [dm3] X_11722416_SNP [dm6]	A	G	4.499e^-4	0.966	SPLICE_SITE_REGION Tango10 INTRON Tango10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6679547	3R_6679547_SNP [dm3] 3R_10853825_SNP [dm6]	C	T	4.501e^-4	0.966	SYNONYMOUS_CODING CG6567 UPSTREAM CG4511 DOWNSTREAM CG4565	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	19143892	2R_19143892_DEL [dm3] 2R_23256369_DEL [dm6]	ACATATATG	A	4.502e^-4	0.966	INTERGENIC
3L	2271086	3L_2271086_SNP [dm3] 3L_2271086_SNP [dm6]	G	T	4.512e^-4	0.966	SYNONYMOUS_CODING yellow-g
2L	1844777	2L_1844777_SNP [dm3] 2L_1844777_SNP [dm6]	A	C	4.521e^-4	0.966	INTRON wry
3L	16217145	3L_16217145_SNP [dm3] 3L_16224045_SNP [dm6]	G	A	4.521e^-4	0.966	INTERGENIC
2L	7666726	2L_7666726_SNP [dm3] 2L_7666726_SNP [dm6]	G	C	4.528e^-4	0.966	INTRON Slob & 1 other
2R	17578654	2R_17578654_SNP [dm3] 2R_21691149_SNP [dm6]	G	A	4.530e^-4	0.966	UPSTREAM CG42496 & 3 others DOWNSTREAM CG10307 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	15455787	X_15455787_SNP [dm3] X_15561754_SNP [dm6]	T	C	4.532e^-4	0.966	INTERGENIC
X	19968080	X_19968080_SNP [dm3] X_20074047_SNP [dm6]	A	G	4.536e^-4	0.966	INTERGENIC
X	21122998	X_21122998_SNP [dm3] X_21251971_SNP [dm6]	A	G	4.543e^-4	0.966	UPSTREAM CG1722 INTRON CG32521
2R	88691	2R_88691_SNP [dm3] 2R_4201186_SNP [dm6]	G	T	4.543e^-4	0.966	INTERGENIC
3R	2504007	3R_2504007_SNP [dm3] 3R_6678285_SNP [dm6]	G	A	4.552e^-4	0.966	NON_SYNONYMOUS_CODING lab	regulatory region FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11521530	2L_11521530_SNP [dm3] 2L_11521530_SNP [dm6]	T	G	4.553e^-4	0.966	UPSTREAM CG14930 DOWNSTREAM CG43153 & 1 other INTERGENIC
3L	7277357	3L_7277357_DEL [dm3] 3L_7284257_DEL [dm6]	TG	T	4.555e^-4	0.966	INTRON unc-13-4A
X	22047926	X_22047926_SNP [dm3] X_22646090_SNP [dm6]	T	C	4.563e^-4	0.966	INTERGENIC
X	15274810	X_15274810_SNP [dm3] X_15380777_SNP [dm6]	A	T	4.564e^-4	0.966	UTR_3_PRIME CG9164
2R	15381887	2R_15381887_SNP [dm3] 2R_19494382_SNP [dm6]	G	A	4.566e^-4	0.966	UTR_3_PRIME hpo DOWNSTREAM Rep
3L	13372239	3L_13372239_SNP [dm3] 3L_13379139_SNP [dm6]	C	G	4.573e^-4	0.966	UTR_3_PRIME SNCF INTRON CG14111	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5253138	2R_5253138_SNP [dm3] 2R_9365633_SNP [dm6]	G	A	4.584e^-4	0.966	INTRON CG13954	TF binding site mE1_TFBS_chinmo
2L	1788059	2L_1788059_SNP [dm3] 2L_1788059_SNP [dm6]	T	C	4.589e^-4	0.966	INTERGENIC
2L	19822185	2L_19822185_DEL [dm3] 2L_19822185_DEL [dm6]	CC	C	4.589e^-4	0.966	INTRON sick
2R	5550001	2R_5550001_SNP [dm3] 2R_9662496_SNP [dm6]	G	A	4.591e^-4	0.966	INTRON Mmp2
2R	19682578	2R_19682578_SNP [dm3] 2R_23795055_SNP [dm6]	A	T	4.598e^-4	0.966	INTRON CG9850
2L	12379046	2L_12379046_SNP [dm3] 2L_12379046_SNP [dm6]	C	A	4.598e^-4	0.966	INTRON bru-2
2L	12379049	2L_12379049_SNP [dm3] 2L_12379049_SNP [dm6]	T	A	4.598e^-4	0.966	INTRON bru-2
2L	12379050	2L_12379050_SNP [dm3] 2L_12379050_SNP [dm6]	C	A	4.598e^-4	0.966	INTRON bru-2
2R	8986545	2R_8986545_SNP [dm3] 2R_13099040_SNP [dm6]	G	T	4.605e^-4	0.966	INTERGENIC
2L	5097254	2L_5097254_SNP [dm3] 2L_5097254_SNP [dm6]	A	G	4.607e^-4	0.966	INTRON CG4230	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11051798	3L_11051798_SNP [dm3] 3L_11058698_SNP [dm6]	A	T	4.617e^-4	0.966	SPLICE_SITE_REGION CG7888 DOWNSTREAM CG6321 INTRON CG7888	TF binding site mE1_TFBS_cad
2R	8281686	2R_8281686_SNP [dm3] 2R_12394181_SNP [dm6]	T	C	4.631e^-4	0.966	SYNONYMOUS_CODING Or49a UPSTREAM CG30048
2L	873155	2L_873155_SNP [dm3] 2L_873155_SNP [dm6]	G	A	4.632e^-4	0.966	NON_SYNONYMOUS_CODING PNUTS	TF binding site mE1_TFBS_sens
2R	17738061	2R_17738061_MNP [dm3] 2R_21850556_MNP [dm6]	TGT	GAG	4.634e^-4	0.966	INTERGENIC
2L	1785564	2L_1785564_SNP [dm3] 2L_1785564_SNP [dm6]	G	A	4.635e^-4	0.966	DOWNSTREAM Gr22e INTERGENIC
2L	19921664	2L_19921664_SNP [dm3] 2L_19921664_SNP [dm6]	G	A	4.642e^-4	0.966	INTRON sick EXON CR43828
2R	15885596	2R_15885596_SNP [dm3] 2R_19998091_SNP [dm6]	T	A	4.643e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	3339240	3L_3339240_SNP [dm3] 3L_3339240_SNP [dm6]	A	T	4.644e^-4	0.966	INTRON kst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	16871276	2L_16871276_SNP [dm3] 2L_16871276_SNP [dm6]	C	T	4.645e^-4	0.966	INTRON CR31781
2L	13693807	2L_13693807_SNP [dm3] 2L_13693807_SNP [dm6]	T	C	4.652e^-4	0.966	INTRON CG31814
2L	1789954	2L_1789954_SNP [dm3] 2L_1789954_SNP [dm6]	G	C	4.654e^-4	0.966	SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11758271	2R_11758271_DEL [dm3] 2R_15870766_DEL [dm6]	TTGAGT	T	4.655e^-4	0.966	UTR_3_PRIME sli
2L	1637018	2L_1637018_SNP [dm3] 2L_1637018_SNP [dm6]	C	G	4.684e^-4	0.966	INTERGENIC
2L	1637020	2L_1637020_SNP [dm3] 2L_1637020_SNP [dm6]	T	A	4.684e^-4	0.966	INTERGENIC
2L	1637021	2L_1637021_INS [dm3] 2L_1637021_INS [dm6]	G	GGT	4.684e^-4	0.966	INTERGENIC
2R	15222362	2R_15222362_SNP [dm3] 2R_19334857_SNP [dm6]	T	G	4.684e^-4	0.966	INTRON Rgk1 & 1 other
2R	3798804	2R_3798804_SNP [dm3] 2R_7911299_SNP [dm6]	T	A	4.690e^-4	0.966	INTRON CG30377
2L	9271516	2L_9271516_SNP [dm3] 2L_9271516_SNP [dm6]	T	A	4.700e^-4	0.966	UPSTREAM Ggamma30A INTRON Ggamma30A
2L	9927045	2L_9927045_SNP [dm3] 2L_9927045_SNP [dm6]	T	A	4.701e^-4	0.966	INTRON CG42366	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9927049	2L_9927049_SNP [dm3] 2L_9927049_SNP [dm6]	A	G	4.701e^-4	0.966	INTRON CG42366	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12388961	3R_12388961_SNP [dm3] 3R_16563239_SNP [dm6]	C	G	4.708e^-4	0.966	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	18252362	2L_18252362_SNP [dm3] 2L_18252362_SNP [dm6]	G	A	4.710e^-4	0.966	SYNONYMOUS_CODING CG43406 DOWNSTREAM CG43406 INTRON CG42750
3R	20919915	3R_20919915_SNP [dm3] 3R_25094193_SNP [dm6]	A	T	4.723e^-4	0.966	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	12348652	3L_12348652_SNP [dm3] 3L_12355552_SNP [dm6]	A	G	4.725e^-4	0.966	INTERGENIC
3R	13429275	3R_13429275_SNP [dm3] 3R_17603553_SNP [dm6]	T	A	4.725e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18676633	2R_18676633_SNP [dm3] 2R_22789128_SNP [dm6]	C	G	4.732e^-4	0.966	INTRON CG42260
2L	4136139	2L_4136139_SNP [dm3] 2L_4136139_SNP [dm6]	G	A	4.739e^-4	0.966	INTERGENIC
3L	2927572	3L_2927572_SNP [dm3] 3L_2927572_SNP [dm6]	T	A	4.745e^-4	0.966	INTRON Shab
X	19433395	X_19433395_SNP [dm3] X_19539362_SNP [dm6]	C	T	4.759e^-4	0.966	INTRON CG32532
X	4306840	X_4306840_SNP [dm3] X_4412807_SNP [dm6]	G	A	4.762e^-4	0.966	UPSTREAM bi INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	7675712	2L_7675712_SNP [dm3] 2L_7675712_SNP [dm6]	C	T	4.770e^-4	0.966	UPSTREAM Slob INTRON Myo28B1
3R	14917216	3R_14917216_SNP [dm3] 3R_19091494_SNP [dm6]	A	C	4.778e^-4	0.966	INTRON cdi	TF binding site mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5509240	2R_5509240_SNP [dm3] 2R_9621735_SNP [dm6]	G	A	4.783e^-4	0.966	UPSTREAM mir-307a DOWNSTREAM mir-307b INTRON Mmp2
2R	3493542	2R_3493542_SNP [dm3] 2R_7606037_SNP [dm6]	T	G	4.793e^-4	0.966	NON_SYNONYMOUS_CODING CG1358	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20146663	2L_20146663_SNP [dm3] 2L_20146663_SNP [dm6]	A	G	4.794e^-4	0.966	INTERGENIC
2L	6705065	2L_6705065_SNP [dm3] 2L_6705065_SNP [dm6]	G	T	4.802e^-4	0.966	INTRON Tsp	TF binding site mE1_TFBS_hkb
2L	12950160	2L_12950160_SNP [dm3] 2L_12950160_SNP [dm6]	A	T	4.805e^-4	0.966	INTERGENIC
2R	17098380	2R_17098380_DEL [dm3] 2R_21210875_DEL [dm6]	ACA	A	4.810e^-4	0.966	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
2L	6118056	2L_6118056_SNP [dm3] 2L_6118056_SNP [dm6]	C	T	4.810e^-4	0.966	UPSTREAM CG31642 INTRON stai
3L	15533212	3L_15533212_SNP [dm3] 3L_15540112_SNP [dm6]	A	G	4.817e^-4	0.966	INTRON CrebA
2L	16865307	2L_16865307_SNP [dm3] 2L_16865307_SNP [dm6]	G	A	4.822e^-4	0.966	INTERGENIC
2L	7779689	2L_7779689_SNP [dm3] 2L_7779689_SNP [dm6]	A	T	4.822e^-4	0.966	UPSTREAM Uro INTERGENIC
2L	15601563	2L_15601563_SNP [dm3] 2L_15601563_SNP [dm6]	C	T	4.822e^-4	0.966	INTERGENIC
2L	6118329	2L_6118329_DEL [dm3] 2L_6118329_DEL [dm6]	TAATTGT	T	4.827e^-4	0.966	UPSTREAM CG31642 INTRON stai
2L	7670414	2L_7670414_SNP [dm3] 2L_7670414_SNP [dm6]	G	A	4.831e^-4	0.966	INTRON Slob & 1 other
2R	9658063	2R_9658063_SNP [dm3] 2R_13770558_SNP [dm6]	A	G	4.840e^-4	0.966	INTRON Cpr50Ca	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25892486	3R_25892486_INS [dm3] 3R_30066764_INS [dm6]	A	AA	4.844e^-4	0.966	INTRON sima
X	19960743	X_19960743_SNP [dm3] X_20066710_SNP [dm6]	A	T	4.848e^-4	0.966	INTERGENIC
X	5702304	X_5702304_SNP [dm3] X_5808271_SNP [dm6]	T	C	4.849e^-4	0.966	UPSTREAM Prosbeta2R1 INTERGENIC
2R	1350526	2R_1350526_SNP [dm3] 2R_5463021_SNP [dm6]	C	T	4.853e^-4	0.966	INTERGENIC
2L	19513366	2L_19513366_SNP [dm3] 2L_19513366_SNP [dm6]	C	T	4.855e^-4	0.966	SYNONYMOUS_CODING CG10186	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	12753449	2L_12753449_SNP [dm3] 2L_12753449_SNP [dm6]	A	T	4.867e^-4	0.966	INTERGENIC
2L	4709708	2L_4709708_DEL [dm3] 2L_4709708_DEL [dm6]	TCAGGATTACTTT...	T	4.868e^-4	0.966	INTRON CG34351	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8151897	3L_8151897_SNP [dm3] 3L_8158797_SNP [dm6]	G	A	4.874e^-4	0.966	UTR_5_PRIME CG42445 DOWNSTREAM CG43886
2L	3713521	2L_3713521_SNP [dm3] 2L_3713521_SNP [dm6]	C	A	4.885e^-4	0.966	START_GAINED CG2818 UTR_5_PRIME CG2818 UPSTREAM CG31955 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18326146	3L_18326146_SNP [dm3] 3L_18333046_SNP [dm6]	G	A	4.888e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	6314359	3R_6314359_SNP [dm3] 3R_10488637_SNP [dm6]	A	G	4.892e^-4	0.966	EXON CR45576
2L	8695949	2L_8695949_SNP [dm3] 2L_8695949_SNP [dm6]	G	C	4.894e^-4	0.966	INTRON Hnf4
2R	17347287	2R_17347287_SNP [dm3] 2R_21459782_SNP [dm6]	C	T	4.898e^-4	0.966	INTRON Sdc
2L	12163211	2L_12163211_INS [dm3] 2L_12163211_INS [dm6]	T	TTT	4.910e^-4	0.966	DOWNSTREAM CG31861 INTRON CG31760
X	15701100	X_15701100_INS [dm3] X_15807067_INS [dm6]	T	TTGTC	4.917e^-4	0.966	DOWNSTREAM CR44384 INTRON sd
X	15701102	X_15701102_MNP [dm3] X_15807069_MNP [dm6]	AAAA	GTCT	4.917e^-4	0.966	DOWNSTREAM CR44384 INTRON sd
3R	22821899	3R_22821899_SNP [dm3] 3R_26996177_SNP [dm6]	G	A	4.918e^-4	0.966	SYNONYMOUS_CODING TwdlC UPSTREAM RYa-R	TF binding site mE1_TFBS_chinmo
2R	7077530	2R_7077530_SNP [dm3] 2R_11190025_SNP [dm6]	G	C	4.925e^-4	0.966	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	16461469	3L_16461469_SNP [dm3] 3L_16468369_SNP [dm6]	T	A	4.927e^-4	0.966	INTRON CG33158
2R	13418208	2R_13418208_SNP [dm3] 2R_17530703_SNP [dm6]	C	T	4.929e^-4	0.966	INTRON Patronin	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	16651177	3R_16651177_SNP [dm3] 3R_20825455_SNP [dm6]	G	A	4.932e^-4	0.966	SYNONYMOUS_CODING AdSS	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16651198	3R_16651198_SNP [dm3] 3R_20825476_SNP [dm6]	C	T	4.932e^-4	0.966	SYNONYMOUS_CODING AdSS	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18232149	2L_18232149_SNP [dm3] 2L_18232149_SNP [dm6]	A	G	4.937e^-4	0.966	INTRON CG42750
2R	17393753	2R_17393753_SNP [dm3] 2R_21506248_SNP [dm6]	G	A	4.948e^-4	0.966	START_GAINED MESK2 UTR_5_PRIME MESK2 INTRON MESK2
2L	1844745	2L_1844745_DEL [dm3] 2L_1844745_DEL [dm6]	ATGAGCCTTAGTGCGGGATT...	A	4.957e^-4	0.966	INTRON wry
2L	12134392	2L_12134392_SNP [dm3] 2L_12134392_SNP [dm6]	A	T	4.964e^-4	0.966	UPSTREAM rho-6 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	12134395	2L_12134395_SNP [dm3] 2L_12134395_SNP [dm6]	C	T	4.964e^-4	0.966	UPSTREAM rho-6 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	18045366	2L_18045366_SNP [dm3] 2L_18045366_SNP [dm6]	G	T	4.966e^-4	0.966	INTRON rdo
2L	18045431	2L_18045431_SNP [dm3] 2L_18045431_SNP [dm6]	G	A	4.966e^-4	0.966	INTRON rdo
3L	8728549	3L_8728549_SNP [dm3] 3L_8735449_SNP [dm6]	G	T	4.967e^-4	0.966	INTRON Prm
3L	11048907	3L_11048907_SNP [dm3] 3L_11055807_SNP [dm6]	G	A	4.969e^-4	0.966	UTR_5_PRIME CG7888 INTRON CG7888
3R	9136003	3R_9136003_SNP [dm3] 3R_13310281_SNP [dm6]	C	T	4.972e^-4	0.966	SYNONYMOUS_CODING CG32473
2L	6118327	2L_6118327_SNP [dm3] 2L_6118327_SNP [dm6]	T	C	4.973e^-4	0.966	UPSTREAM CG31642 INTRON stai
2R	3656257	2R_3656257_SNP [dm3] 2R_7768752_SNP [dm6]	G	A	4.983e^-4	0.966	INTRON CG30497 & 1 other
2L	7260483	2L_7260483_SNP [dm3] 2L_7260483_SNP [dm6]	G	A	4.985e^-4	0.966	INTRON Wnt4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4136146	2L_4136146_SNP [dm3] 2L_4136146_SNP [dm6]	A	T	4.987e^-4	0.966	INTERGENIC
3R	9561831	3R_9561831_SNP [dm3] 3R_13736109_SNP [dm6]	T	C	4.991e^-4	0.966	INTRON CG34383
2L	1791864	2L_1791864_SNP [dm3] 2L_1791864_SNP [dm6]	C	A	4.998e^-4	0.966	UPSTREAM Gr22c DOWNSTREAM Gr22b INTERGENIC	regulatory region REDfly_CRMs
2L	1791866	2L_1791866_DEL [dm3] 2L_1791866_DEL [dm6]	GATATA	G	4.998e^-4	0.966	UPSTREAM Gr22c DOWNSTREAM Gr22b INTERGENIC	regulatory region REDfly_CRMs
2L	15733346	2L_15733346_SNP [dm3] 2L_15733346_SNP [dm6]	A	T	5.003e^-4	0.966	INTRON CycE	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	19537711	X_19537711_INS [dm3] X_19643678_INS [dm6]	G	GGG	5.005e^-4	0.966	UPSTREAM Sec61gamma & 1 other DOWNSTREAM Arp10 INTRON Sec61gamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18418105	2L_18418105_SNP [dm3] 2L_18418105_SNP [dm6]	T	G	5.008e^-4	0.966	INTERGENIC
2L	17681346	2L_17681346_SNP [dm3] 2L_17681346_SNP [dm6]	C	T	5.011e^-4	0.966	INTRON CadN
2L	12751172	2L_12751172_SNP [dm3] 2L_12751172_SNP [dm6]	A	T	5.014e^-4	0.966	INTERGENIC
2R	6771052	2R_6771052_SNP [dm3] 2R_10883547_SNP [dm6]	T	C	5.019e^-4	0.966	UTR_5_PRIME CG18003 DOWNSTREAM Pex6	TF binding site mE1_TFBS_chinmo
3R	19169946	3R_19169946_SNP [dm3] 3R_23344224_SNP [dm6]	G	A	5.019e^-4	0.966	INTRON pnt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19174578	3R_19174578_SNP [dm3] 3R_23348856_SNP [dm6]	C	G	5.020e^-4	0.966	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2905291	3L_2905291_SNP [dm3] 3L_2905291_SNP [dm6]	C	T	5.021e^-4	0.966	INTRON Shab
2R	12123105	2R_12123105_SNP [dm3] 2R_16235600_SNP [dm6]	T	A	5.022e^-4	0.966	UPSTREAM CG7786 INTERGENIC
3L	9640444	3L_9640444_SNP [dm3] 3L_9647344_SNP [dm6]	G	C	5.036e^-4	0.966	INTRON fry & 1 other
3R	14486305	3R_14486305_SNP [dm3] 3R_18660583_SNP [dm6]	C	T	5.037e^-4	0.966	SYNONYMOUS_CODING CstF-64 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	14528994	3R_14528994_SNP [dm3] 3R_18703272_SNP [dm6]	A	T	5.037e^-4	0.966	INTERGENIC
3R	14528998	3R_14528998_SNP [dm3] 3R_18703276_SNP [dm6]	T	C	5.037e^-4	0.966	INTERGENIC
3R	17682180	3R_17682180_INS [dm3] 3R_21856458_INS [dm6]	A	AA	5.037e^-4	0.966	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	18376647	3R_18376647_SNP [dm3] 3R_22550925_SNP [dm6]	G	A	5.037e^-4	0.966	INTRON CR44062 & 1 other
3R	20201147	3R_20201147_SNP [dm3] 3R_24375425_SNP [dm6]	T	G	5.037e^-4	0.966	INTRON CG17781
3R	9748518	3R_9748518_SNP [dm3] 3R_13922796_SNP [dm6]	T	C	5.046e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20213789	2L_20213789_SNP [dm3] 2L_20213789_SNP [dm6]	A	C	5.046e^-4	0.966	INTERGENIC	transposable element FlyBase
2L	6781879	2L_6781879_SNP [dm3] 2L_6781879_SNP [dm6]	T	G	5.058e^-4	0.966	INTRON nrv1
2R	4159492	2R_4159492_SNP [dm3] 2R_8271987_SNP [dm6]	T	C	5.060e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13421164	3R_13421164_SNP [dm3] 3R_17595442_SNP [dm6]	C	A	5.060e^-4	0.966	NON_SYNONYMOUS_CODING Sgs5 DOWNSTREAM CG7587
3R	10813888	3R_10813888_SNP [dm3] 3R_14988166_SNP [dm6]	C	A	5.063e^-4	0.966	INTERGENIC
3R	26011724	3R_26011724_SNP [dm3] 3R_30186002_SNP [dm6]	A	C	5.063e^-4	0.966	NON_SYNONYMOUS_CODING CG9747
3R	3974612	3R_3974612_SNP [dm3] 3R_8148890_SNP [dm6]	T	C	5.067e^-4	0.966	UTR_3_PRIME grn
2R	10211594	2R_10211594_SNP [dm3] 2R_14324089_SNP [dm6]	G	C	5.070e^-4	0.966	INTRON Shroom
2L	12981245	2L_12981245_SNP [dm3] 2L_12981245_SNP [dm6]	T	A	5.074e^-4	0.966	UTR_3_PRIME Vha68-3
3R	25502956	3R_25502956_SNP [dm3] 3R_29677234_SNP [dm6]	G	A	5.075e^-4	0.966	SYNONYMOUS_CODING Cap-D2
2L	10741251	2L_10741251_SNP [dm3] 2L_10741251_SNP [dm6]	A	G	5.075e^-4	0.966	SYNONYMOUS_CODING CG6729 UPSTREAM mir-4970 DOWNSTREAM CG12299	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12086607	3L_12086607_SNP [dm3] 3L_12093507_SNP [dm6]	C	G	5.086e^-4	0.966	INTERGENIC
2L	6781912	2L_6781912_DEL [dm3] 2L_6781912_DEL [dm6]	GG	G	5.090e^-4	0.966	INTRON nrv1
X	14150210	X_14150210_SNP [dm3] X_14256177_SNP [dm6]	G	A	5.115e^-4	0.966	NON_SYNONYMOUS_CODING mud DOWNSTREAM mud INTRON mud	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10634363	2R_10634363_SNP [dm3] 2R_14746858_SNP [dm6]	G	A	5.131e^-4	0.966	UPSTREAM AttA DOWNSTREAM Dro INTERGENIC
2L	9271603	2L_9271603_SNP [dm3] 2L_9271603_SNP [dm6]	T	A	5.135e^-4	0.966	UPSTREAM Ggamma30A INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
3L	7967327	3L_7967327_SNP [dm3] 3L_7974227_SNP [dm6]	G	C	5.145e^-4	0.966	INTRON CG8042	TF binding site mE1_TFBS_inv
3L	2091851	3L_2091851_SNP [dm3] 3L_2091851_SNP [dm6]	G	A	5.147e^-4	0.966	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20292370	3R_20292370_SNP [dm3] 3R_24466648_SNP [dm6]	T	C	5.151e^-4	0.966	INTERGENIC
3R	20292376	3R_20292376_SNP [dm3] 3R_24466654_SNP [dm6]	T	C	5.151e^-4	0.966	INTERGENIC
3L	14477407	3L_14477407_SNP [dm3] 3L_14484307_SNP [dm6]	G	A	5.158e^-4	0.966	INTRON bbg
3L	14477408	3L_14477408_SNP [dm3] 3L_14484308_SNP [dm6]	C	G	5.158e^-4	0.966	INTRON bbg
2L	16404257	2L_16404257_SNP [dm3] 2L_16404257_SNP [dm6]	C	G	5.159e^-4	0.966	INTRON CG5888
3R	18113333	3R_18113333_SNP [dm3] 3R_22287611_SNP [dm6]	G	A	5.169e^-4	0.966	INTRON SKIP
3R	18113350	3R_18113350_SNP [dm3] 3R_22287628_SNP [dm6]	G	C	5.169e^-4	0.966	INTRON SKIP
3L	2145923	3L_2145923_SNP [dm3] 3L_2145923_SNP [dm6]	G	A	5.171e^-4	0.966	INTRON zormin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12030557	2R_12030557_SNP [dm3] 2R_16143052_SNP [dm6]	A	T	5.174e^-4	0.966	UPSTREAM Aats-cys DOWNSTREAM CG30094 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17337210	3R_17337210_SNP [dm3] 3R_21511488_SNP [dm6]	C	A	5.179e^-4	0.966	INTRON C15
X	17808225	X_17808225_SNP [dm3] X_17914192_SNP [dm6]	A	C	5.186e^-4	0.966	INTRON CG6847
X	19960742	X_19960742_SNP [dm3] X_20066709_SNP [dm6]	T	C	5.190e^-4	0.966	INTERGENIC
2L	7675435	2L_7675435_SNP [dm3] 2L_7675435_SNP [dm6]	T	G	5.190e^-4	0.966	UPSTREAM Slob INTRON Myo28B1
3L	12086707	3L_12086707_SNP [dm3] 3L_12093607_SNP [dm6]	C	T	5.192e^-4	0.966	INTERGENIC
X	15437740	X_15437740_SNP [dm3] X_15543707_SNP [dm6]	C	T	5.196e^-4	0.966	INTRON Ac13E
2L	20146624	2L_20146624_SNP [dm3] 2L_20146624_SNP [dm6]	C	A	5.198e^-4	0.966	INTERGENIC
2L	20231504	2L_20231504_SNP [dm3] 2L_20231504_SNP [dm6]	G	A	5.198e^-4	0.966	INTERGENIC
2R	6555570	2R_6555570_SNP [dm3] 2R_10668065_SNP [dm6]	G	T	5.205e^-4	0.966	INTERGENIC
2L	1791862	2L_1791862_SNP [dm3] 2L_1791862_SNP [dm6]	T	G	5.209e^-4	0.966	UPSTREAM Gr22c DOWNSTREAM Gr22b INTERGENIC	regulatory region REDfly_CRMs
3R	6302274	3R_6302274_SNP [dm3] 3R_10476552_SNP [dm6]	G	T	5.210e^-4	0.966	INTERGENIC
3L	10777764	3L_10777764_SNP [dm3] 3L_10784664_SNP [dm6]	A	T	5.222e^-4	0.966	INTRON CR44544
3L	18155007	3L_18155007_SNP [dm3] 3L_18161907_SNP [dm6]	G	T	5.223e^-4	0.966	INTRON CG13699
3L	18155008	3L_18155008_SNP [dm3] 3L_18161908_SNP [dm6]	C	T	5.223e^-4	0.966	INTRON CG13699
3R	14529013	3R_14529013_SNP [dm3] 3R_18703291_SNP [dm6]	T	C	5.223e^-4	0.966	INTERGENIC
3R	18656188	3R_18656188_SNP [dm3] 3R_22830466_SNP [dm6]	C	G	5.229e^-4	0.966	INTERGENIC
3L	876541	3L_876541_SNP [dm3] 3L_876541_SNP [dm6]	T	C	5.234e^-4	0.966	DOWNSTREAM CG13907 INTRON CG32479

By genomic position
Variant impact
Gene name

FBS phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results