DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.945e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1591 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	18092484	2R_18092484_SNP [dm3] 2R_22204979_SNP [dm6]	G	A	3.802e^-7	0.383	SYNONYMOUS_CODING CG3292
2R	19535680	2R_19535680_SNP [dm3] 2R_23648157_SNP [dm6]	G	A	5.813e^-7	0.383	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18092521	2R_18092521_SNP [dm3] 2R_22205016_SNP [dm6]	G	T	7.865e^-7	0.383	DOWNSTREAM CG3290 INTRON CG3292
3L	18580422	3L_18580422_SNP [dm3] 3L_18587322_SNP [dm6]	G	A	1.014e^-6	0.383	INTERGENIC
2R	18092508	2R_18092508_SNP [dm3] 2R_22205003_SNP [dm6]	T	G	1.022e^-6	0.383	SPLICE_SITE_REGION CG3292 SYNONYMOUS_CODING CG3292
2L	2527756	2L_2527756_SNP [dm3] 2L_2527756_SNP [dm6]	T	G	1.445e^-6	0.451	INTERGENIC
3L	10309822	3L_10309822_SNP [dm3] 3L_10316722_SNP [dm6]	A	C	2.122e^-6	0.568	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18092514	2R_18092514_SNP [dm3] 2R_22205009_SNP [dm6]	C	A	3.045e^-6	0.642	SPLICE_SITE_REGION CG3292 DOWNSTREAM CG3290 INTRON CG3292
3L	1046141	3L_1046141_SNP [dm3] 3L_1046141_SNP [dm6]	C	T	3.084e^-6	0.642	INTRON bab1
2L	3355667	2L_3355667_DEL [dm3] 2L_3355667_DEL [dm6]	TTCT	T	3.463e^-6	0.649	UPSTREAM E23 INTERGENIC	TF binding site mE1_TFBS_Trl
X	2516882	X_2516882_SNP [dm3] X_2622849_SNP [dm6]	G	A	4.197e^-6	0.65	SYNONYMOUS_CODING brv3 DOWNSTREAM Seipin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2536566	X_2536566_SNP [dm3] X_2642533_SNP [dm6]	A	G	4.297e^-6	0.65	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3259797	3L_3259797_SNP [dm3] 3L_3259797_SNP [dm6]	T	G	4.508e^-6	0.65	INTRON ckd
2R	18091233	2R_18091233_SNP [dm3] 2R_22203728_SNP [dm6]	A	T	4.974e^-6	0.666	UTR_3_PRIME CG3292 DOWNSTREAM CR45376
2L	3786563	2L_3786563_SNP [dm3] 2L_3786563_SNP [dm6]	G	C	5.520e^-6	0.69	UPSTREAM CG3921 DOWNSTREAM CG31960 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	9663453	2L_9663453_DEL [dm3] 2L_9663453_DEL [dm6]	CC	C	6.106e^-6	0.7	INTERGENIC
2R	18099434	2R_18099434_SNP [dm3] 2R_22211929_SNP [dm6]	C	T	6.345e^-6	0.7	SYNONYMOUS_CODING CG11291 UPSTREAM ari-2	TF binding site mE1_TFBS_sens
3L	18580449	3L_18580449_SNP [dm3] 3L_18587349_SNP [dm6]	A	T	6.882e^-6	0.717	INTERGENIC
3L	3694006	3L_3694006_SNP [dm3] 3L_3694006_SNP [dm6]	T	G	8.114e^-6	0.791	EXON CR43485
2L	12419457	2L_12419457_SNP [dm3] 2L_12419457_SNP [dm6]	T	G	8.441e^-6	0.791	INTRON vir-1
2R	16310981	2R_16310981_SNP [dm3] 2R_20423476_SNP [dm6]	T	C	1.044e^-5	0.932	UPSTREAM CG12484 INTERGENIC
2R	1356376	2R_1356376_SNP [dm3] 2R_5468871_SNP [dm6]	T	C	1.220e^-5	1	INTRON CG30440
3L	3706261	3L_3706261_SNP [dm3] 3L_3706261_SNP [dm6]	A	C	1.287e^-5	1	INTERGENIC
3L	18580404	3L_18580404_DEL [dm3] 3L_18587304_DEL [dm6]	TTTCCTGGT	T	1.379e^-5	1	INTERGENIC
2R	18042418	2R_18042418_SNP [dm3] 2R_22154913_SNP [dm6]	T	A	1.437e^-5	1	INTRON a	TF binding site BDTNP1_TFBS_da
3L	1469433	3L_1469433_SNP [dm3] 3L_1469433_SNP [dm6]	T	A	1.612e^-5	1	DOWNSTREAM rho INTRON Ptp61F
2R	18090768	2R_18090768_SNP [dm3] 2R_22203263_SNP [dm6]	C	A	1.637e^-5	1	UPSTREAM Swim DOWNSTREAM CG3292 & 1 other INTERGENIC
2R	18095929	2R_18095929_SNP [dm3] 2R_22208424_SNP [dm6]	C	T	1.727e^-5	1	UPSTREAM CG3290 DOWNSTREAM CG3264 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9663560	2L_9663560_SNP [dm3] 2L_9663560_SNP [dm6]	G	T	1.810e^-5	1	INTERGENIC
3R	19178496	3R_19178496_SNP [dm3] 3R_23352774_SNP [dm6]	A	G	2.039e^-5	1	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23165564	3R_23165564_SNP [dm3] 3R_27339842_SNP [dm6]	G	A	2.219e^-5	1	UPSTREAM CG42534 INTERGENIC
3L	297694	3L_297694_SNP [dm3] 3L_297694_SNP [dm6]	C	T	2.253e^-5	1	UPSTREAM RhoGEF3 INTRON RhoGEF3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	298038	3L_298038_SNP [dm3] 3L_298038_SNP [dm6]	A	C	2.253e^-5	1	NON_SYNONYMOUS_CODING RhoGEF3 INTRON RhoGEF3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18378411	3R_18378411_SNP [dm3] 3R_22552689_SNP [dm6]	A	G	2.271e^-5	1	UPSTREAM bond & 1 other INTRON bond
X	19241123	X_19241123_SNP [dm3] X_19347090_SNP [dm6]	C	T	2.301e^-5	1	INTRON nAChRalpha7
3L	3706392	3L_3706392_SNP [dm3] 3L_3706392_SNP [dm6]	G	A	2.311e^-5	1	INTERGENIC
2L	3859876	2L_3859876_DEL [dm3] 2L_3859876_DEL [dm6]	TT	T	2.341e^-5	1	INTERGENIC
2R	8901136	2R_8901136_SNP [dm3] 2R_13013631_SNP [dm6]	T	C	2.369e^-5	1	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	26028905	3R_26028905_SNP [dm3] 3R_30203183_SNP [dm6]	C	T	2.598e^-5	1	UPSTREAM CG9743 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	8877016	3L_8877016_SNP [dm3] 3L_8883916_SNP [dm6]	A	G	2.715e^-5	1	INTRON dally
X	10812271	X_10812271_SNP [dm3] X_10918238_SNP [dm6]	C	A	2.723e^-5	1	SYNONYMOUS_CODING CG43901	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18095710	2R_18095710_SNP [dm3] 2R_22208205_SNP [dm6]	A	T	2.747e^-5	1	UPSTREAM CG3290 DOWNSTREAM CG3264 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23165421	3R_23165421_SNP [dm3] 3R_27339699_SNP [dm6]	C	T	2.866e^-5	1	UPSTREAM CG42534 INTERGENIC
2R	18092535	2R_18092535_SNP [dm3] 2R_22205030_SNP [dm6]	C	G	2.885e^-5	1	DOWNSTREAM CG3290 INTRON CG3292
2R	18092541	2R_18092541_SNP [dm3] 2R_22205036_SNP [dm6]	T	C	2.885e^-5	1	DOWNSTREAM CG3290 INTRON CG3292
2R	18095939	2R_18095939_SNP [dm3] 2R_22208434_SNP [dm6]	G	A	3.073e^-5	1	UPSTREAM CG3290 DOWNSTREAM CG3264 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26028916	3R_26028916_INS [dm3] 3R_30203194_INS [dm6]	C	CTCCCC	3.200e^-5	1	UPSTREAM CG9743 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	5231259	2L_5231259_SNP [dm3] 2L_5231259_SNP [dm6]	T	C	3.245e^-5	1	INTRON tkv	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	290190	3L_290190_SNP [dm3] 3L_290190_SNP [dm6]	T	C	3.262e^-5	1	SYNONYMOUS_CODING RhoGEF3
3R	25910123	3R_25910123_SNP [dm3] 3R_30084401_SNP [dm6]	T	C	3.293e^-5	1	INTRON sima	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1277524	3L_1277524_SNP [dm3] 3L_1277524_SNP [dm6]	C	T	3.421e^-5	1	INTRON CG32333
3L	13945259	3L_13945259_SNP [dm3] 3L_13952159_SNP [dm6]	T	A	3.432e^-5	1	INTRON CG32137
3L	305503	3L_305503_SNP [dm3] 3L_305503_SNP [dm6]	A	T	3.483e^-5	1	UTR_3_PRIME fwd DOWNSTREAM fwd & 1 other
3L	3955550	3L_3955550_SNP [dm3] 3L_3955550_SNP [dm6]	C	T	3.504e^-5	1	UTR_3_PRIME CG12605
2R	18098500	2R_18098500_SNP [dm3] 2R_22210995_SNP [dm6]	T	A	3.573e^-5	1	UPSTREAM CG11291 & 1 other INTERGENIC
3L	10309840	3L_10309840_SNP [dm3] 3L_10316740_SNP [dm6]	A	G	3.704e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4297737	3L_4297737_SNP [dm3] 3L_4297737_SNP [dm6]	C	A	3.789e^-5	1	INTRON dyl
3R	23190890	3R_23190890_SNP [dm3] 3R_27365168_SNP [dm6]	G	C	4.184e^-5	1	INTRON CG42534
2L	9620486	2L_9620486_SNP [dm3] 2L_9620486_SNP [dm6]	G	A	4.216e^-5	1	INTRON GlcAT-S
2L	6045631	2L_6045631_SNP [dm3] 2L_6045631_SNP [dm6]	T	G	4.392e^-5	1	UPSTREAM ade2 DOWNSTREAM mir-966 & 1 other INTRON ade2 EXON mir-966	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9689492	2R_9689492_SNP [dm3] 2R_13801987_SNP [dm6]	T	C	4.609e^-5	1	INTRON Cpr50Cb
2R	19535238	2R_19535238_SNP [dm3] 2R_23647715_SNP [dm6]	G	A	4.649e^-5	1	SYNONYMOUS_CODING retn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	9424086	3L_9424086_SNP [dm3] 3L_9430986_SNP [dm6]	T	A	4.829e^-5	1	SYNONYMOUS_CODING MTF-1 UTR_5_PRIME MTF-1 INTRON MTF-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9663400	2L_9663400_SNP [dm3] 2L_9663400_SNP [dm6]	A	T	4.832e^-5	1	INTERGENIC
2L	12161241	2L_12161241_SNP [dm3] 2L_12161241_SNP [dm6]	G	A	4.877e^-5	1	SPLICE_SITE_REGION CG31760 UPSTREAM CG31861 INTRON CG31760
X	9501872	X_9501872_SNP [dm3] X_9607839_SNP [dm6]	A	G	4.996e^-5	1	SYNONYMOUS_CODING Aats-lys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	9665883	2L_9665883_SNP [dm3] 2L_9665883_SNP [dm6]	T	C	5.198e^-5	1	INTERGENIC
2L	8043395	2L_8043395_SNP [dm3] 2L_8043395_SNP [dm6]	G	A	5.238e^-5	1	UPSTREAM CG7466 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18098498	2R_18098498_SNP [dm3] 2R_22210993_SNP [dm6]	G	T	5.314e^-5	1	UPSTREAM CG11291 & 1 other INTERGENIC
3L	8252533	3L_8252533_SNP [dm3] 3L_8259433_SNP [dm6]	C	A	5.443e^-5	1	INTRON Dscam4
3L	9335730	3L_9335730_SNP [dm3] 3L_9342630_SNP [dm6]	T	C	5.532e^-5	1	SYNONYMOUS_CODING PGRP-LC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19178520	3R_19178520_SNP [dm3] 3R_23352798_SNP [dm6]	A	G	5.597e^-5	1	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10018367	X_10018367_SNP [dm3] X_10124334_SNP [dm6]	A	T	5.607e^-5	1	UPSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
2R	18099723	2R_18099723_SNP [dm3] 2R_22212218_SNP [dm6]	C	T	5.757e^-5	1	UPSTREAM ari-2 INTRON CG11291	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	2670266	2L_2670266_SNP [dm3] 2L_2670266_SNP [dm6]	G	A	5.812e^-5	1	SYNONYMOUS_CODING Gr23a UPSTREAM Gr23a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	1277641	3L_1277641_SNP [dm3] 3L_1277641_SNP [dm6]	C	T	5.813e^-5	1	INTRON CG32333
2L	8490609	2L_8490609_SNP [dm3] 2L_8490609_SNP [dm6]	T	G	5.843e^-5	1	UPSTREAM CG43400 DOWNSTREAM CG13088 INTERGENIC
3R	26520251	3R_26520251_SNP [dm3] 3R_30694529_SNP [dm6]	T	C	5.885e^-5	1	SYNONYMOUS_CODING CG12069
X	14709319	X_14709319_SNP [dm3] X_14815286_SNP [dm6]	T	A	5.926e^-5	1	INTRON rut
X	19218874	X_19218874_SNP [dm3] X_19324841_SNP [dm6]	T	C	5.959e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2L	3355408	2L_3355408_SNP [dm3] 2L_3355408_SNP [dm6]	C	T	6.051e^-5	1	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6094041	3L_6094041_SNP [dm3] 3L_6100941_SNP [dm6]	C	A	6.088e^-5	1	SYNONYMOUS_CODING Ets65A
3L	10934675	3L_10934675_SNP [dm3] 3L_10941575_SNP [dm6]	T	A	6.096e^-5	1	INTERGENIC
3R	6239321	3R_6239321_SNP [dm3] 3R_10413599_SNP [dm6]	C	T	6.134e^-5	1	SYNONYMOUS_CODING Rrp46 UPSTREAM Irp-1B DOWNSTREAM CG6345	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	18592817	2R_18592817_SNP [dm3] 2R_22705312_SNP [dm6]	C	T	6.142e^-5	1	UPSTREAM CG30259 DOWNSTREAM Obp58c INTRON Obp58b
3L	4090499	3L_4090499_SNP [dm3] 3L_4090499_SNP [dm6]	A	G	6.265e^-5	1	SYNONYMOUS_CODING CG14989	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6791627	3R_6791627_SNP [dm3] 3R_10965905_SNP [dm6]	T	G	6.266e^-5	1	INTERGENIC
2L	12137519	2L_12137519_SNP [dm3] 2L_12137519_SNP [dm6]	T	C	6.276e^-5	1	UPSTREAM Gr33a INTERGENIC
2L	10956638	2L_10956638_SNP [dm3] 2L_10956638_SNP [dm6]	A	G	6.304e^-5	1	INTRON dpr2
3L	4035087	3L_4035087_SNP [dm3] 3L_4035087_SNP [dm6]	A	C	6.314e^-5	1	SYNONYMOUS_CODING Gr64e UTR_3_PRIME Gr64d UPSTREAM CR45042 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2R	10425822	2R_10425822_SNP [dm3] 2R_14538317_SNP [dm6]	T	C	6.331e^-5	1	INTRON ttv
3L	4035084	3L_4035084_SNP [dm3] 3L_4035084_SNP [dm6]	C	A	6.345e^-5	1	SYNONYMOUS_CODING Gr64e UTR_3_PRIME Gr64d UPSTREAM CR45042 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2L	9663517	2L_9663517_SNP [dm3] 2L_9663517_SNP [dm6]	C	T	6.378e^-5	1	INTERGENIC
3L	8877086	3L_8877086_SNP [dm3] 3L_8883986_SNP [dm6]	A	C	6.410e^-5	1	INTRON dally
3L	22840756	3L_22840756_DEL [dm3] 3L_22847656_DEL [dm6]	GCCTTTGCTTGAAG...	G	6.443e^-5	1	DOWNSTREAM tRNA:CR32460 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7963144	2R_7963144_SNP [dm3] 2R_12075639_SNP [dm6]	T	C	6.500e^-5	1	INTRON CG8888
2L	9663345	2L_9663345_INS [dm3] 2L_9663345_INS [dm6]	A	AA	6.518e^-5	1	INTERGENIC
X	10608750	X_10608750_SNP [dm3] X_10714717_SNP [dm6]	G	T	6.616e^-5	1	SYNONYMOUS_CODING CG32676	TF binding site mE1_TFBS_chinmo
3L	8702117	3L_8702117_SNP [dm3] 3L_8709017_SNP [dm6]	C	T	6.618e^-5	1	INTERGENIC	regulatory region REDfly_CRMs
3R	11411679	3R_11411679_SNP [dm3] 3R_15585957_SNP [dm6]	A	T	6.706e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	6941598	3R_6941598_SNP [dm3] 3R_11115876_SNP [dm6]	T	A	6.708e^-5	1	UPSTREAM CG6629 INTERGENIC
2L	3466748	2L_3466748_SNP [dm3] 2L_3466748_SNP [dm6]	T	C	6.745e^-5	1	UPSTREAM msl-2 DOWNSTREAM CG3238 INTRON Pdsw	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2986530	3L_2986530_SNP [dm3] 3L_2986530_SNP [dm6]	G	T	6.747e^-5	1	INTERGENIC
3L	7228298	3L_7228298_SNP [dm3] 3L_7235198_SNP [dm6]	G	A	6.763e^-5	1	NON_SYNONYMOUS_CODING CG14826	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21875044	X_21875044_SNP [dm3] X_22473208_SNP [dm6]	G	C	6.865e^-5	1	UPSTREAM CG14618 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	1142057	2L_1142057_SNP [dm3] 2L_1142057_SNP [dm6]	A	T	6.908e^-5	1	UPSTREAM CR45717 DOWNSTREAM CG4577 INTERGENIC
2L	9663427	2L_9663427_SNP [dm3] 2L_9663427_SNP [dm6]	T	A	6.925e^-5	1	INTERGENIC
3L	9558534	3L_9558534_SNP [dm3] 3L_9565434_SNP [dm6]	A	C	7.087e^-5	1	INTRON CG42673
2R	16772537	2R_16772537_SNP [dm3] 2R_20885032_SNP [dm6]	G	A	7.152e^-5	1	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	1445227	3L_1445227_SNP [dm3] 3L_1445227_SNP [dm6]	A	G	7.459e^-5	1	INTRON Ptp61F	TF binding site mE1_TFBS_sens
3L	7025908	3L_7025908_SNP [dm3] 3L_7032808_SNP [dm6]	G	T	7.526e^-5	1	INTRON Mp
2L	9788156	2L_9788156_SNP [dm3] 2L_9788156_SNP [dm6]	C	T	7.677e^-5	1	SYNONYMOUS_CODING IP3K1 EXON CR18854	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1046130	3L_1046130_SNP [dm3] 3L_1046130_SNP [dm6]	C	T	7.727e^-5	1	INTRON bab1
2L	2529967	2L_2529967_SNP [dm3] 2L_2529967_SNP [dm6]	T	G	7.743e^-5	1	INTERGENIC
2L	19277190	2L_19277190_SNP [dm3] 2L_19277190_SNP [dm6]	C	T	7.756e^-5	1	INTERGENIC
2R	12440859	2R_12440859_SNP [dm3] 2R_16553354_SNP [dm6]	T	A	7.784e^-5	1	INTRON Syn2	TF binding site BDTNP1_TFBS_twi
3L	20287653	3L_20287653_SNP [dm3] 3L_20294553_SNP [dm6]	T	C	7.820e^-5	1	INTRON gogo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	1432610	2L_1432610_SNP [dm3] 2L_1432610_SNP [dm6]	T	C	8.046e^-5	1	UPSTREAM snRNA:U3:22A INTERGENIC
2L	17193577	2L_17193577_SNP [dm3] 2L_17193577_SNP [dm6]	A	G	8.087e^-5	1	SYNONYMOUS_CODING beat-IIIc
2L	9663415	2L_9663415_INS [dm3] 2L_9663415_INS [dm6]	T	TT	8.392e^-5	1	INTERGENIC
2R	16790819	2R_16790819_SNP [dm3] 2R_20903314_SNP [dm6]	A	G	8.595e^-5	1	UTR_5_PRIME otp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6604535	3L_6604535_SNP [dm3] 3L_6611435_SNP [dm6]	A	G	8.642e^-5	1	INTRON CG8398
3L	6604537	3L_6604537_SNP [dm3] 3L_6611437_SNP [dm6]	A	T	8.642e^-5	1	INTRON CG8398
X	4985799	X_4985799_SNP [dm3] X_5091766_SNP [dm6]	A	T	8.691e^-5	1	INTRON rg & 1 other
2L	10288766	2L_10288766_SNP [dm3] 2L_10288766_SNP [dm6]	A	C	8.756e^-5	1	NON_SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad
X	16848893	X_16848893_SNP [dm3] X_16954860_SNP [dm6]	T	G	8.857e^-5	1	SYNONYMOUS_CODING RhoGAP15B
2R	15244961	2R_15244961_SNP [dm3] 2R_19357456_SNP [dm6]	T	G	9.175e^-5	1	UPSTREAM Rgk1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16519569	2R_16519569_SNP [dm3] 2R_20632064_SNP [dm6]	C	A	9.187e^-5	1	INTRON Rcd6	TF binding site mE1_TFBS_chinmo
2R	16310082	2R_16310082_SNP [dm3] 2R_20422577_SNP [dm6]	G	A	9.214e^-5	1	INTERGENIC
2R	16310085	2R_16310085_SNP [dm3] 2R_20422580_SNP [dm6]	T	A	9.214e^-5	1	INTERGENIC
3L	22840814	3L_22840814_SNP [dm3] 3L_22847714_SNP [dm6]	T	G	9.403e^-5	1	DOWNSTREAM tRNA:CR32460 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	2457569	3L_2457569_SNP [dm3] 3L_2457569_SNP [dm6]	T	A	9.431e^-5	1	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19291430	2L_19291430_SNP [dm3] 2L_19291430_SNP [dm6]	C	T	9.476e^-5	1	INTERGENIC
2R	7941487	2R_7941487_SNP [dm3] 2R_12053982_SNP [dm6]	C	T	9.536e^-5	1	UTR_3_PRIME CG44314 INTRON CG44314	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9665010	2L_9665010_SNP [dm3] 2L_9665010_SNP [dm6]	C	A	9.630e^-5	1	INTERGENIC
2R	17087676	2R_17087676_INS [dm3] 2R_21200171_INS [dm6]	G	GG	9.659e^-5	1	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	10815934	X_10815934_SNP [dm3] X_10921901_SNP [dm6]	C	G	9.716e^-5	1	UTR_3_PRIME CG43901 DOWNSTREAM CG43901	TF binding site BDTNP1_TFBS_dl
3L	2387346	3L_2387346_SNP [dm3] 3L_2387346_SNP [dm6]	T	C	9.857e^-5	1	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	21104991	3R_21104991_SNP [dm3] 3R_25279269_SNP [dm6]	A	G	9.976e^-5	1	SYNONYMOUS_CODING CG10514	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10368189	2R_10368189_SNP [dm3] 2R_14480684_SNP [dm6]	G	C	1.001e^-4	1	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
X	16049124	X_16049124_DEL [dm3] X_16155091_DEL [dm6]	TT	T	1.012e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	8901109	2R_8901109_SNP [dm3] 2R_13013604_SNP [dm6]	T	A	1.026e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Trl
X	13310085	X_13310085_SNP [dm3] X_13416052_SNP [dm6]	T	C	1.032e^-4	1	SYNONYMOUS_CODING Set2	TF binding site mE1_TFBS_HSA
2L	8129681	2L_8129681_SNP [dm3] 2L_8129681_SNP [dm6]	A	T	1.033e^-4	1	INTRON CG8668
2R	18090772	2R_18090772_DEL [dm3] 2R_22203267_DEL [dm6]	AA	A	1.035e^-4	1	UPSTREAM Swim DOWNSTREAM CG3292 & 1 other INTERGENIC
X	8935866	X_8935866_SNP [dm3] X_9041833_SNP [dm6]	T	C	1.038e^-4	1	UPSTREAM CG42388 INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	12611885	2R_12611885_SNP [dm3] 2R_16724380_SNP [dm6]	C	A	1.045e^-4	1	INTRON CG30463
3L	13929147	3L_13929147_SNP [dm3] 3L_13936047_SNP [dm6]	T	C	1.049e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18042601	2R_18042601_SNP [dm3] 2R_22155096_SNP [dm6]	G	A	1.051e^-4	1	INTRON a	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	11627119	3L_11627119_SNP [dm3] 3L_11634019_SNP [dm6]	A	T	1.054e^-4	1	UPSTREAM CR45158 INTRON CG32091
3R	6821125	3R_6821125_SNP [dm3] 3R_10995403_SNP [dm6]	G	C	1.072e^-4	1	INTRON CG34114
X	7957822	X_7957822_DEL [dm3] X_8063789_DEL [dm6]	ACTTAACATCTAGTGCTAAA...	A	1.081e^-4	1	SPLICE_SITE_REGION mys INTRON mys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10512568	2R_10512568_SNP [dm3] 2R_14625063_SNP [dm6]	T	A	1.089e^-4	1	DOWNSTREAM snoRNA:Me28S-G2703c & 2 others INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	6240113	3R_6240113_SNP [dm3] 3R_10414391_SNP [dm6]	A	C	1.092e^-4	1	NON_SYNONYMOUS_CODING CG6345 DOWNSTREAM Rrp46	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	5432218	3R_5432218_SNP [dm3] 3R_9606496_SNP [dm6]	T	C	1.094e^-4	1	INTRON CG8312
3L	17013720	3L_17013720_SNP [dm3] 3L_17020620_SNP [dm6]	G	T	1.096e^-4	1	SYNONYMOUS_CODING CG6652 DOWNSTREAM CG7728	TF binding site mE1_TFBS_cad
2R	14809650	2R_14809650_SNP [dm3] 2R_18922145_SNP [dm6]	C	A	1.099e^-4	1	INTRON sano
2L	4493741	2L_4493741_SNP [dm3] 2L_4493741_SNP [dm6]	G	A	1.100e^-4	1	INTRON dp	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	12385389	3L_12385389_SNP [dm3] 3L_12392289_SNP [dm6]	T	A	1.100e^-4	1	UPSTREAM Ncc69 INTERGENIC
2L	16773457	2L_16773457_INS [dm3] 2L_16773457_INS [dm6]	A	ATA	1.111e^-4	1	INTRON Mhc	TF binding site BDTNP1_TFBS_twi
2L	9663485	2L_9663485_SNP [dm3] 2L_9663485_SNP [dm6]	G	A	1.118e^-4	1	INTERGENIC
3L	6079982	3L_6079982_SNP [dm3] 3L_6086882_SNP [dm6]	C	A	1.136e^-4	1	INTRON CG13293
3L	14930132	3L_14930132_SNP [dm3] 3L_14937032_SNP [dm6]	A	T	1.140e^-4	1	INTRON DCX-EMAP
2R	16772546	2R_16772546_SNP [dm3] 2R_20885041_SNP [dm6]	A	T	1.143e^-4	1	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
X	10813723	X_10813723_SNP [dm3] X_10919690_SNP [dm6]	G	A	1.154e^-4	1	INTRON CG43901
3R	2693081	3R_2693081_SNP [dm3] 3R_6867359_SNP [dm6]	G	A	1.155e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3L	6146690	3L_6146690_SNP [dm3] 3L_6153590_SNP [dm6]	C	T	1.179e^-4	1	UPSTREAM Acp65Aa INTERGENIC
3L	7283923	3L_7283923_SNP [dm3] 3L_7290823_SNP [dm6]	G	A	1.181e^-4	1	INTRON unc-13-4A
2L	3859752	2L_3859752_SNP [dm3] 2L_3859752_SNP [dm6]	G	A	1.185e^-4	1	INTERGENIC
X	2536387	X_2536387_SNP [dm3] X_2642354_SNP [dm6]	A	T	1.209e^-4	1	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	1134989	3L_1134989_SNP [dm3] 3L_1134989_SNP [dm6]	G	T	1.242e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	17088669	2R_17088669_SNP [dm3] 2R_21201164_SNP [dm6]	A	G	1.247e^-4	1	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	17088695	2R_17088695_SNP [dm3] 2R_21201190_SNP [dm6]	G	A	1.247e^-4	1	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	16753467	3L_16753467_SNP [dm3] 3L_16760367_SNP [dm6]	G	C	1.252e^-4	1	INTERGENIC
X	11275858	X_11275858_SNP [dm3] X_11381825_SNP [dm6]	C	G	1.261e^-4	1	INTRON dlg1
2L	13946297	2L_13946297_SNP [dm3] 2L_13946297_SNP [dm6]	C	T	1.263e^-4	1	INTRON Ance-3 & 1 other
X	14709290	X_14709290_SNP [dm3] X_14815257_SNP [dm6]	T	G	1.264e^-4	1	INTRON rut
2R	18841780	2R_18841780_SNP [dm3] 2R_22954257_SNP [dm6]	G	A	1.272e^-4	1	UPSTREAM CR32835 INTERGENIC
3L	12459386	3L_12459386_SNP [dm3] 3L_12466286_SNP [dm6]	T	A	1.296e^-4	1	INTRON eyg
2R	18091432	2R_18091432_SNP [dm3] 2R_22203927_SNP [dm6]	G	A	1.308e^-4	1	DOWNSTREAM CR45376 INTRON CG3292
3L	7024691	3L_7024691_SNP [dm3] 3L_7031591_SNP [dm6]	C	T	1.327e^-4	1	INTRON Mp
2L	7073835	2L_7073835_SNP [dm3] 2L_7073835_SNP [dm6]	A	G	1.342e^-4	1	INTRON Pvf2
2R	19523227	2R_19523227_DEL [dm3] 2R_23635704_DEL [dm6]	ACC	A	1.352e^-4	1	INTRON retn	TF binding site mE1_TFBS_cad
3L	9808623	3L_9808623_SNP [dm3] 3L_9815523_SNP [dm6]	T	G	1.357e^-4	1	UPSTREAM CG43897 INTRON CG43897
2L	3974833	2L_3974833_SNP [dm3] 2L_3974833_SNP [dm6]	T	G	1.358e^-4	1	INTRON fred
3L	11630178	3L_11630178_SNP [dm3] 3L_11637078_SNP [dm6]	T	C	1.363e^-4	1	INTRON CG32091
2R	17087699	2R_17087699_DEL [dm3] 2R_21200194_DEL [dm6]	TT	T	1.368e^-4	1	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	4034174	3L_4034174_SNP [dm3] 3L_4034174_SNP [dm6]	C	T	1.369e^-4	1	SYNONYMOUS_CODING Gr64e UTR_3_PRIME Gr64d DOWNSTREAM Gr64d EXON CR45042
X	13617616	X_13617616_SNP [dm3] X_13723583_SNP [dm6]	A	G	1.377e^-4	1	SYNONYMOUS_CODING mus101	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5942024	2R_5942024_SNP [dm3] 2R_10054519_SNP [dm6]	C	T	1.385e^-4	1	NON_SYNONYMOUS_CODING Def INTRON magu	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	25894886	3R_25894886_SNP [dm3] 3R_30069164_SNP [dm6]	C	T	1.390e^-4	1	INTRON sima
2R	15245045	2R_15245045_SNP [dm3] 2R_19357540_SNP [dm6]	A	G	1.395e^-4	1	UTR_5_PRIME CG11961 UPSTREAM CG11961	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
4	1133900	4_1133900_DEL [dm3] 4_1113274_DEL [dm6]	AAA	A	1.405e^-4	1	UTR_3_PRIME sv & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3L	3696230	3L_3696230_SNP [dm3] 3L_3696230_SNP [dm6]	A	C	1.409e^-4	1	INTERGENIC
X	3791539	X_3791539_SNP [dm3] X_3897506_SNP [dm6]	G	T	1.418e^-4	1	INTRON CG42541
3R	14992766	3R_14992766_SNP [dm3] 3R_19167044_SNP [dm6]	A	G	1.429e^-4	1	INTRON sqz
3L	6527988	3L_6527988_SNP [dm3] 3L_6534888_SNP [dm6]	T	A	1.433e^-4	1	INTRON sfl
3R	6560362	3R_6560362_DEL [dm3] 3R_10734640_DEL [dm6]	GTCCC	G	1.435e^-4	1	DOWNSTREAM tomboy20 INTERGENIC
X	7957788	X_7957788_DEL [dm3] X_8063755_DEL [dm6]	CCA	T	1.444e^-4	1	INTRON mys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7024371	3L_7024371_SNP [dm3] 3L_7031271_SNP [dm6]	C	T	1.447e^-4	1	INTRON Mp
X	8967371	X_8967371_SNP [dm3] X_9073338_SNP [dm6]	C	G	1.450e^-4	1	INTRON CG44325
2L	4409567	2L_4409567_SNP [dm3] 2L_4409567_SNP [dm6]	G	C	1.463e^-4	1	INTRON CG15431
2R	3157100	2R_3157100_SNP [dm3] 2R_7269595_SNP [dm6]	T	C	1.465e^-4	1	INTERGENIC
2R	16794315	2R_16794315_SNP [dm3] 2R_20906810_SNP [dm6]	C	G	1.471e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
3L	5214339	3L_5214339_SNP [dm3] 3L_5221239_SNP [dm6]	T	C	1.472e^-4	1	INTRON shep
X	20463624	X_20463624_SNP [dm3] X_20592597_SNP [dm6]	G	A	1.476e^-4	1	SYNONYMOUS_CODING RunxA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4366570	2R_4366570_SNP [dm3] 2R_8479065_SNP [dm6]	T	C	1.478e^-4	1	INTRON mtt
3R	4309566	3R_4309566_SNP [dm3] 3R_8483844_SNP [dm6]	G	T	1.480e^-4	1	INTERGENIC
3L	481433	3L_481433_SNP [dm3] 3L_481433_SNP [dm6]	C	A	1.482e^-4	1	INTRON klar
X	9589558	X_9589558_DEL [dm3] X_9695525_DEL [dm6]	TA	T	1.502e^-4	1	INTRON btd	TF binding site BDTNP1_TFBS_dl
2L	6101991	2L_6101991_SNP [dm3] 2L_6101991_SNP [dm6]	G	A	1.519e^-4	1	INTRON stai
2R	7903810	2R_7903810_SNP [dm3] 2R_12016305_SNP [dm6]	G	C	1.522e^-4	1	DOWNSTREAM CR44306 INTRON otk	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
2R	4366065	2R_4366065_SNP [dm3] 2R_8478560_SNP [dm6]	A	G	1.522e^-4	1	INTRON mtt
2R	4366478	2R_4366478_SNP [dm3] 2R_8478973_SNP [dm6]	C	T	1.522e^-4	1	INTRON mtt
3L	5371904	3L_5371904_SNP [dm3] 3L_5378804_SNP [dm6]	C	T	1.538e^-4	1	SYNONYMOUS_CODING Ir64a DOWNSTREAM CR45743
2R	17085473	2R_17085473_SNP [dm3] 2R_21197968_SNP [dm6]	A	C	1.539e^-4	1	INTRON Lapsyn
X	2538020	X_2538020_SNP [dm3] X_2643987_SNP [dm6]	T	C	1.540e^-4	1	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	19481122	X_19481122_SNP [dm3] X_19587089_SNP [dm6]	A	G	1.541e^-4	1	DOWNSTREAM CG14219 & 1 other INTERGENIC
X	9215158	X_9215158_SNP [dm3] X_9321125_SNP [dm6]	G	A	1.546e^-4	1	SYNONYMOUS_CODING c12.2	TF binding site mE1_TFBS_cad
2L	14072720	2L_14072720_SNP [dm3] 2L_14072720_SNP [dm6]	C	A	1.547e^-4	1	INTRON nAChRalpha5
2L	14849427	2L_14849427_SNP [dm3] 2L_14849427_SNP [dm6]	T	G	1.559e^-4	1	UPSTREAM CG15279 INTRON CG15279
X	18022858	X_18022858_SNP [dm3] X_18128825_SNP [dm6]	C	T	1.561e^-4	1	DOWNSTREAM mir-210 & 1 other INTERGENIC
3L	18580470	3L_18580470_SNP [dm3] 3L_18587370_SNP [dm6]	T	A	1.562e^-4	1	INTERGENIC
2R	9542375	2R_9542375_SNP [dm3] 2R_13654870_SNP [dm6]	C	T	1.569e^-4	1	INTRON fas
X	10812553	X_10812553_SNP [dm3] X_10918520_SNP [dm6]	G	A	1.574e^-4	1	SPLICE_SITE_REGION CG43901 INTRON CG43901	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	14308543	3R_14308543_SNP [dm3] 3R_18482821_SNP [dm6]	C	T	1.576e^-4	1	INTRON fru
2L	19223221	2L_19223221_SNP [dm3] 2L_19223221_SNP [dm6]	C	G	1.579e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11629267	3L_11629267_SNP [dm3] 3L_11636167_SNP [dm6]	C	G	1.582e^-4	1	INTRON CG32091
2L	9663423	2L_9663423_SNP [dm3] 2L_9663423_SNP [dm6]	T	C	1.583e^-4	1	INTERGENIC
2L	3859870	2L_3859870_SNP [dm3] 2L_3859870_SNP [dm6]	T	C	1.593e^-4	1	INTERGENIC
3L	14559120	3L_14559120_SNP [dm3] 3L_14566020_SNP [dm6]	G	T	1.596e^-4	1	INTERGENIC
2R	10030248	2R_10030248_SNP [dm3] 2R_14142743_SNP [dm6]	G	A	1.597e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk
3L	8739671	3L_8739671_INS [dm3] 3L_8746571_INS [dm6]	A	ATGTA	1.613e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
X	9215131	X_9215131_SNP [dm3] X_9321098_SNP [dm6]	C	T	1.634e^-4	1	SYNONYMOUS_CODING c12.2	TF binding site mE1_TFBS_cad
2L	4575057	2L_4575057_SNP [dm3] 2L_4575057_SNP [dm6]	A	T	1.656e^-4	1	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21971441	3R_21971441_SNP [dm3] 3R_26145719_SNP [dm6]	C	T	1.664e^-4	1	INTERGENIC
2R	16772420	2R_16772420_DEL [dm3] 2R_20884915_DEL [dm6]	TCAAATACT	T	1.676e^-4	1	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	16772432	2R_16772432_DEL [dm3] 2R_20884927_DEL [dm6]	TG	T	1.676e^-4	1	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	16772437	2R_16772437_DEL [dm3] 2R_20884932_DEL [dm6]	TC	T	1.676e^-4	1	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	16772439	2R_16772439_INS [dm3] 2R_20884934_INS [dm6]	T	TGA	1.676e^-4	1	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	16772581	2R_16772581_SNP [dm3] 2R_20885076_SNP [dm6]	A	G	1.676e^-4	1	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	4306798	3R_4306798_SNP [dm3] 3R_8481076_SNP [dm6]	C	G	1.689e^-4	1	INTERGENIC
3L	752059	3L_752059_SNP [dm3] 3L_752059_SNP [dm6]	C	T	1.704e^-4	1	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	16159557	X_16159557_SNP [dm3] X_16265524_SNP [dm6]	G	A	1.706e^-4	1	SYNONYMOUS_CODING CG12507
2R	15244962	2R_15244962_SNP [dm3] 2R_19357457_SNP [dm6]	C	A	1.711e^-4	1	UPSTREAM Rgk1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4060393	X_4060393_SNP [dm3] X_4166360_SNP [dm6]	C	T	1.735e^-4	1	INTRON Fas2
X	6852068	X_6852068_SNP [dm3] X_6958035_SNP [dm6]	C	T	1.739e^-4	1	UTR_3_PRIME CG32732 INTRON CG14431
3L	3693744	3L_3693744_SNP [dm3] 3L_3693744_SNP [dm6]	G	C	1.744e^-4	1	DOWNSTREAM CR43485 INTERGENIC
3R	26978876	3R_26978876_SNP [dm3] 3R_31153154_SNP [dm6]	T	C	1.744e^-4	1	SYNONYMOUS_CODING Gycbeta100B
3L	18018687	3L_18018687_INS [dm3] 3L_18025587_INS [dm6]	T	TT	1.754e^-4	1	INTRON Eip75B
3L	7726767	3L_7726767_SNP [dm3] 3L_7733667_SNP [dm6]	A	C	1.758e^-4	1	INTRON CG32373 & 1 other
2R	14099073	2R_14099073_SNP [dm3] 2R_18211568_SNP [dm6]	T	C	1.774e^-4	1	DOWNSTREAM CR45147 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	7024484	3L_7024484_SNP [dm3] 3L_7031384_SNP [dm6]	A	C	1.775e^-4	1	INTRON Mp
2R	16772441	2R_16772441_DEL [dm3] 2R_20884936_DEL [dm6]	ATTTTCTT	A	1.782e^-4	1	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	9407815	2L_9407815_SNP [dm3] 2L_9407815_SNP [dm6]	G	A	1.788e^-4	1	INTRON Shawl
X	6824909	X_6824909_SNP [dm3] X_6930876_SNP [dm6]	C	T	1.796e^-4	1	INTRON CG14431
2L	9663430	2L_9663430_SNP [dm3] 2L_9663430_SNP [dm6]	G	A	1.803e^-4	1	INTERGENIC
2L	9665020	2L_9665020_SNP [dm3] 2L_9665020_SNP [dm6]	T	G	1.810e^-4	1	INTERGENIC
2R	17092353	2R_17092353_SNP [dm3] 2R_21204848_SNP [dm6]	C	T	1.815e^-4	1	SYNONYMOUS_CODING Glycogenin INTRON CG44245
X	8296207	X_8296207_SNP [dm3] X_8402174_SNP [dm6]	A	G	1.818e^-4	1	SYNONYMOUS_CODING CG10555	TF binding site mE1_TFBS_chinmo
2L	16755697	2L_16755697_SNP [dm3] 2L_16755697_SNP [dm6]	A	T	1.822e^-4	1	UTR_5_PRIME yellow-b
3R	26988267	3R_26988267_SNP [dm3] 3R_31162545_SNP [dm6]	T	G	1.828e^-4	1	INTRON Gycbeta100B & 1 other
2R	16772565	2R_16772565_SNP [dm3] 2R_20885060_SNP [dm6]	G	T	1.838e^-4	1	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	14840685	3L_14840685_SNP [dm3] 3L_14847585_SNP [dm6]	T	C	1.840e^-4	1	INTRON CG17839
2L	21916504	2L_21916504_SNP [dm3] 2L_21916504_SNP [dm6]	T	C	1.843e^-4	1	NON_SYNONYMOUS_CODING CG11634
X	12243443	X_12243443_INS [dm3] X_12349410_INS [dm6]	G	GG	1.843e^-4	1	INTERGENIC
2R	7328207	2R_7328207_SNP [dm3] 2R_11440702_SNP [dm6]	T	A	1.844e^-4	1	INTRON CG7777
2R	4398671	2R_4398671_SNP [dm3] 2R_8511166_SNP [dm6]	T	C	1.850e^-4	1	INTRON mtt
2L	9665695	2L_9665695_SNP [dm3] 2L_9665695_SNP [dm6]	C	A	1.852e^-4	1	INTERGENIC
3L	750449	3L_750449_SNP [dm3] 3L_750449_SNP [dm6]	G	T	1.864e^-4	1	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
2L	3355255	2L_3355255_SNP [dm3] 2L_3355255_SNP [dm6]	G	A	1.872e^-4	1	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	6604421	3L_6604421_SNP [dm3] 3L_6611321_SNP [dm6]	T	A	1.872e^-4	1	INTRON CG8398
3R	14992649	3R_14992649_SNP [dm3] 3R_19166927_SNP [dm6]	A	G	1.880e^-4	1	INTRON sqz	TF binding site BDTNP1_TFBS_dl
3L	10303118	3L_10303118_SNP [dm3] 3L_10310018_SNP [dm6]	C	G	1.883e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15584724	3L_15584724_SNP [dm3] 3L_15591624_SNP [dm6]	G	A	1.895e^-4	1	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
3L	19515108	3L_19515108_SNP [dm3] 3L_19522008_SNP [dm6]	C	T	1.897e^-4	1	INTRON Cpr76Bc
3L	292086	3L_292086_SNP [dm3] 3L_292086_SNP [dm6]	G	T	1.914e^-4	1	UPSTREAM RhoGEF3 INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu
2R	20926401	2R_20926401_SNP [dm3] 2R_25038878_SNP [dm6]	C	T	1.922e^-4	1	INTRON Nplp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_eve mE1_TFBS_HSA
X	16848887	X_16848887_SNP [dm3] X_16954854_SNP [dm6]	C	T	1.923e^-4	1	SYNONYMOUS_CODING RhoGAP15B
3L	3257374	3L_3257374_DEL [dm3] 3L_3257374_DEL [dm6]	AT	A	1.925e^-4	1	UPSTREAM ckd INTERGENIC
X	10018369	X_10018369_SNP [dm3] X_10124336_SNP [dm6]	A	G	1.929e^-4	1	UPSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
2R	10619227	2R_10619227_INS [dm3] 2R_14731722_INS [dm6]	T	TACAATAT	1.934e^-4	1	INTERGENIC
X	10812052	X_10812052_SNP [dm3] X_10918019_SNP [dm6]	A	G	1.968e^-4	1	SYNONYMOUS_CODING CG43901	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20446178	X_20446178_SNP [dm3] X_20575151_SNP [dm6]	C	A	1.981e^-4	1	DOWNSTREAM CG42580 INTERGENIC
3L	3023211	3L_3023211_SNP [dm3] 3L_3023211_SNP [dm6]	C	A	1.994e^-4	1	DOWNSTREAM aly INTERGENIC
X	9830051	X_9830051_SNP [dm3] X_9936018_SNP [dm6]	C	G	2.009e^-4	1	INTERGENIC
2R	15245456	2R_15245456_SNP [dm3] 2R_19357951_SNP [dm6]	A	T	2.011e^-4	1	UPSTREAM CG11961 INTRON CG11961	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	15245458	2R_15245458_DEL [dm3] 2R_19357953_DEL [dm6]	ATAC	A	2.011e^-4	1	UPSTREAM CG11961 INTRON CG11961	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	16772568	2R_16772568_SNP [dm3] 2R_20885063_SNP [dm6]	C	G	2.034e^-4	1	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	288701	3L_288701_SNP [dm3] 3L_288701_SNP [dm6]	G	A	2.036e^-4	1	INTRON RhoGEF3	TF binding site mE1_TFBS_chinmo
3L	291799	3L_291799_SNP [dm3] 3L_291799_SNP [dm6]	G	C	2.036e^-4	1	UPSTREAM RhoGEF3 INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	293693	3L_293693_SNP [dm3] 3L_293693_SNP [dm6]	C	T	2.036e^-4	1	INTRON RhoGEF3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3937100	3L_3937100_SNP [dm3] 3L_3937100_SNP [dm6]	C	T	2.040e^-4	1	SYNONYMOUS_CODING CG10866	TF binding site mE1_TFBS_cad
2R	16793857	2R_16793857_SNP [dm3] 2R_20906352_SNP [dm6]	G	A	2.043e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
X	13617565	X_13617565_SNP [dm3] X_13723532_SNP [dm6]	A	G	2.065e^-4	1	SYNONYMOUS_CODING mus101	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10424575	2R_10424575_SNP [dm3] 2R_14537070_SNP [dm6]	A	T	2.066e^-4	1	INTRON ttv
2R	17087729	2R_17087729_SNP [dm3] 2R_21200224_SNP [dm6]	A	C	2.073e^-4	1	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	13090983	2R_13090983_SNP [dm3] 2R_17203478_SNP [dm6]	G	A	2.075e^-4	1	INTERGENIC
3L	7804535	3L_7804535_SNP [dm3] 3L_7811435_SNP [dm6]	T	C	2.086e^-4	1	DOWNSTREAM Pdp1 INTERGENIC
3R	21975691	3R_21975691_SNP [dm3] 3R_26149969_SNP [dm6]	T	C	2.086e^-4	1	INTERGENIC
3L	6146587	3L_6146587_SNP [dm3] 3L_6153487_SNP [dm6]	T	G	2.086e^-4	1	UPSTREAM Acp65Aa INTERGENIC
2L	9407985	2L_9407985_SNP [dm3] 2L_9407985_SNP [dm6]	A	G	2.089e^-4	1	INTRON Shawl
3R	14308433	3R_14308433_SNP [dm3] 3R_18482711_SNP [dm6]	T	A	2.091e^-4	1	INTRON fru
3L	5505066	3L_5505066_SNP [dm3] 3L_5511966_SNP [dm6]	T	G	2.098e^-4	1	DOWNSTREAM Lkr INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
2R	12660221	2R_12660221_SNP [dm3] 2R_16772716_SNP [dm6]	T	C	2.100e^-4	1	UPSTREAM unc-104 DOWNSTREAM Sod2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	18647965	2R_18647965_SNP [dm3] 2R_22760460_SNP [dm6]	C	T	2.109e^-4	1	NON_SYNONYMOUS_CODING CG42260 INTRON CG42260	TF binding site mE1_TFBS_cad
2L	7211501	2L_7211501_SNP [dm3] 2L_7211501_SNP [dm6]	T	C	2.109e^-4	1	INTRON CG13784	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	20532206	2R_20532206_SNP [dm3] 2R_24644683_SNP [dm6]	A	C	2.112e^-4	1	INTERGENIC
X	13475138	X_13475138_SNP [dm3] X_13581105_SNP [dm6]	G	T	2.112e^-4	1	INTRON Tango13	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	8543017	3L_8543017_SNP [dm3] 3L_8549917_SNP [dm6]	C	T	2.119e^-4	1	INTRON rhea	TF binding site BDTNP1_TFBS_twi
3L	1277413	3L_1277413_SNP [dm3] 3L_1277413_SNP [dm6]	G	A	2.119e^-4	1	INTRON CG32333
3R	21730910	3R_21730910_SNP [dm3] 3R_25905188_SNP [dm6]	C	T	2.128e^-4	1	DOWNSTREAM CR43259 INTRON CR43259
3L	706492	3L_706492_SNP [dm3] 3L_706492_SNP [dm6]	C	T	2.129e^-4	1	SYNONYMOUS_CODING CG13895 DOWNSTREAM CR44514	TF binding site mE1_TFBS_sens
3R	13724913	3R_13724913_SNP [dm3] 3R_17899191_SNP [dm6]	C	A	2.134e^-4	1	INTRON Rim
2L	3982523	2L_3982523_SNP [dm3] 2L_3982523_SNP [dm6]	G	A	2.137e^-4	1	INTRON fred
2R	8820475	2R_8820475_SNP [dm3] 2R_12932970_SNP [dm6]	A	C	2.147e^-4	1	NON_SYNONYMOUS_CODING CG17019	TF binding site mE1_TFBS_chinmo
3L	7641263	3L_7641263_SNP [dm3] 3L_7648163_SNP [dm6]	C	T	2.149e^-4	1	INTERGENIC
2R	17086782	2R_17086782_SNP [dm3] 2R_21199277_SNP [dm6]	A	G	2.150e^-4	1	UTR_3_PRIME Lapsyn	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	17087222	2R_17087222_SNP [dm3] 2R_21199717_SNP [dm6]	A	T	2.150e^-4	1	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	17087609	2R_17087609_INS [dm3] 2R_21200104_INS [dm6]	T	TGT	2.150e^-4	1	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	10223841	2R_10223841_DEL [dm3] 2R_14336336_DEL [dm6]	TACTT	T	2.152e^-4	1	INTRON Shroom
3L	760350	3L_760350_SNP [dm3] 3L_760350_SNP [dm6]	A	C	2.157e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12578843	2R_12578843_SNP [dm3] 2R_16691338_SNP [dm6]	C	T	2.164e^-4	1	UPSTREAM CG5210 INTRON CG30463 & 1 other
3R	14003910	3R_14003910_SNP [dm3] 3R_18178188_SNP [dm6]	C	A	2.166e^-4	1	UTR_3_PRIME PP2A-B' DOWNSTREAM PP2A-B' INTRON PP2A-B'
2L	8129697	2L_8129697_SNP [dm3] 2L_8129697_SNP [dm6]	A	G	2.167e^-4	1	INTRON CG8668
2R	14658920	2R_14658920_SNP [dm3] 2R_18771415_SNP [dm6]	A	T	2.173e^-4	1	UPSTREAM Mctp INTRON Mctp
2R	14355061	2R_14355061_SNP [dm3] 2R_18467556_SNP [dm6]	A	T	2.174e^-4	1	INTRON CG30116	TF binding site mE1_TFBS_chinmo
3L	7024633	3L_7024633_SNP [dm3] 3L_7031533_SNP [dm6]	C	A	2.184e^-4	1	INTRON Mp
2R	17401941	2R_17401941_SNP [dm3] 2R_21514436_SNP [dm6]	C	T	2.192e^-4	1	UTR_3_PRIME MESK2 DOWNSTREAM MESK2 INTRON MESK2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	20463894	X_20463894_SNP [dm3] X_20592867_SNP [dm6]	C	T	2.193e^-4	1	SYNONYMOUS_CODING RunxA	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10656745	2L_10656745_SNP [dm3] 2L_10656745_SNP [dm6]	C	T	2.199e^-4	1	UPSTREAM CR45692 INTERGENIC
X	20602353	X_20602353_SNP [dm3] X_20731326_SNP [dm6]	C	T	2.204e^-4	1	INTERGENIC
3L	7640030	3L_7640030_SNP [dm3] 3L_7646930_SNP [dm6]	G	A	2.205e^-4	1	INTERGENIC
3L	7947541	3L_7947541_DEL [dm3] 3L_7954441_DEL [dm6]	GG	G	2.210e^-4	1	INTERGENIC
2L	6045668	2L_6045668_SNP [dm3] 2L_6045668_SNP [dm6]	T	C	2.213e^-4	1	UPSTREAM ade2 DOWNSTREAM mir-966 & 2 others INTRON ade2 EXON mir-966	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17288330	3R_17288330_SNP [dm3] 3R_21462608_SNP [dm6]	A	G	2.216e^-4	1	INTERGENIC
X	3557051	X_3557051_SNP [dm3] X_3663018_SNP [dm6]	A	G	2.218e^-4	1	INTRON AstA-R1	transposable element FlyBase
3L	3695858	3L_3695858_SNP [dm3] 3L_3695858_SNP [dm6]	A	T	2.221e^-4	1	INTERGENIC
3R	14992692	3R_14992692_DEL [dm3] 3R_19166970_DEL [dm6]	CC	C	2.225e^-4	1	INTRON sqz	TF binding site BDTNP1_TFBS_dl
3R	21105636	3R_21105636_SNP [dm3] 3R_25279914_SNP [dm6]	T	A	2.230e^-4	1	UPSTREAM CG10514 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21999719	3R_21999719_SNP [dm3] 3R_26173997_SNP [dm6]	A	T	2.236e^-4	1	INTRON CG31323
3R	14308551	3R_14308551_SNP [dm3] 3R_18482829_SNP [dm6]	G	A	2.238e^-4	1	INTRON fru
3L	4979994	3L_4979994_SNP [dm3] 3L_4979994_SNP [dm6]	C	T	2.239e^-4	1	UPSTREAM CR45685 DOWNSTREAM CG17030 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10601984	3L_10601984_SNP [dm3] 3L_10608884_SNP [dm6]	A	T	2.240e^-4	1	INTERGENIC
2R	9688328	2R_9688328_SNP [dm3] 2R_13800823_SNP [dm6]	C	T	2.243e^-4	1	INTRON Cpr50Cb
2L	8129633	2L_8129633_SNP [dm3] 2L_8129633_SNP [dm6]	C	A	2.247e^-4	1	INTRON CG8668
3L	15039584	3L_15039584_SNP [dm3] 3L_15046484_SNP [dm6]	A	T	2.248e^-4	1	INTRON Sytbeta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	20158069	2R_20158069_SNP [dm3] 2R_24270546_SNP [dm6]	C	T	2.254e^-4	1	INTERGENIC
3R	26022634	3R_26022634_SNP [dm3] 3R_30196912_SNP [dm6]	G	C	2.254e^-4	1	SYNONYMOUS_CODING CG9743 UPSTREAM CG15531	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22159318	3R_22159318_SNP [dm3] 3R_26333596_SNP [dm6]	A	G	2.256e^-4	1	INTRON CG33970
3R	17288309	3R_17288309_SNP [dm3] 3R_21462587_SNP [dm6]	A	G	2.263e^-4	1	INTERGENIC
3R	24495773	3R_24495773_SNP [dm3] 3R_28670051_SNP [dm6]	A	G	2.273e^-4	1	NON_SYNONYMOUS_CODING CG33346 UPSTREAM CG9989
2R	17128398	2R_17128398_SNP [dm3] 2R_21240893_SNP [dm6]	A	G	2.281e^-4	1	INTRON ASPP	TF binding site mE1_TFBS_sens
2L	9788360	2L_9788360_SNP [dm3] 2L_9788360_SNP [dm6]	T	C	2.295e^-4	1	UTR_3_PRIME IP3K1 EXON CR18854	TF binding site mE1_TFBS_cad
3R	11586355	3R_11586355_SNP [dm3] 3R_15760633_SNP [dm6]	T	C	2.297e^-4	1	INTERGENIC
3R	25742725	3R_25742725_SNP [dm3] 3R_29917003_SNP [dm6]	C	T	2.303e^-4	1	SYNONYMOUS_CODING trp UTR_3_PRIME trp
2R	9959979	2R_9959979_SNP [dm3] 2R_14072474_SNP [dm6]	G	T	2.317e^-4	1	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	7337006	2L_7337006_SNP [dm3] 2L_7337006_SNP [dm6]	A	G	2.318e^-4	1	INTRON Wnt6
X	14709321	X_14709321_SNP [dm3] X_14815288_SNP [dm6]	G	C	2.328e^-4	1	INTRON rut
2L	10236685	2L_10236685_SNP [dm3] 2L_10236685_SNP [dm6]	C	A	2.329e^-4	1	INTRON mthl15	TF binding site BDTNP1_TFBS_twi
2L	2546174	2L_2546174_SNP [dm3] 2L_2546174_SNP [dm6]	A	T	2.329e^-4	1	INTERGENIC
2R	3733917	2R_3733917_SNP [dm3] 2R_7846412_SNP [dm6]	T	A	2.333e^-4	1	INTRON Dgk
2L	9562194	2L_9562194_SNP [dm3] 2L_9562194_SNP [dm6]	T	C	2.335e^-4	1	INTRON jp
3R	14916033	3R_14916033_SNP [dm3] 3R_19090311_SNP [dm6]	A	G	2.346e^-4	1	INTRON cdi
3L	1899303	3L_1899303_SNP [dm3] 3L_1899303_SNP [dm6]	A	G	2.350e^-4	1	INTRON CG1887	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	20532174	2R_20532174_SNP [dm3] 2R_24644651_SNP [dm6]	G	A	2.353e^-4	1	INTERGENIC
2R	16794332	2R_16794332_SNP [dm3] 2R_20906827_SNP [dm6]	T	C	2.357e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2L	5618622	2L_5618622_SNP [dm3] 2L_5618622_SNP [dm6]	T	C	2.362e^-4	1	UPSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19535317	2R_19535317_SNP [dm3] 2R_23647794_SNP [dm6]	G	A	2.363e^-4	1	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	18624893	2R_18624893_SNP [dm3] 2R_22737388_SNP [dm6]	C	T	2.383e^-4	1	UPSTREAM jbug INTRON jbug
3R	12780349	3R_12780349_SNP [dm3] 3R_16954627_SNP [dm6]	C	A	2.389e^-4	1	INTRON Abd-B	TF binding site mE1_TFBS_cad
2L	8129675	2L_8129675_MNP [dm3] 2L_8129675_MNP [dm6]	AGA	TTT	2.390e^-4	1	INTRON CG8668
3L	5683500	3L_5683500_SNP [dm3] 3L_5690400_SNP [dm6]	C	T	2.391e^-4	1	INTRON sif
2R	16794477	2R_16794477_SNP [dm3] 2R_20906972_SNP [dm6]	T	A	2.421e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	8995102	2L_8995102_SNP [dm3] 2L_8995102_SNP [dm6]	G	T	2.435e^-4	1	SYNONYMOUS_CODING CG17906 UTR_3_PRIME alien DOWNSTREAM alien	TF binding site mE1_TFBS_sens
2L	12042277	2L_12042277_SNP [dm3] 2L_12042277_SNP [dm6]	T	C	2.448e^-4	1	INTRON CG6785	TF binding site mE1_TFBS_chinmo
3R	14308546	3R_14308546_SNP [dm3] 3R_18482824_SNP [dm6]	A	T	2.462e^-4	1	INTRON fru
X	10608732	X_10608732_SNP [dm3] X_10714699_SNP [dm6]	G	A	2.474e^-4	1	SYNONYMOUS_CODING CG32676	TF binding site mE1_TFBS_chinmo
2R	12623792	2R_12623792_SNP [dm3] 2R_16736287_SNP [dm6]	G	A	2.514e^-4	1	DOWNSTREAM CG43104 INTERGENIC
3R	25730356	3R_25730356_SNP [dm3] 3R_29904634_SNP [dm6]	T	A	2.516e^-4	1	UPSTREAM CG15517 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3L	4874212	3L_4874212_SNP [dm3] 3L_4874212_SNP [dm6]	T	C	2.517e^-4	1	INTRON CG17150
3L	3693729	3L_3693729_SNP [dm3] 3L_3693729_SNP [dm6]	T	G	2.524e^-4	1	DOWNSTREAM CR43485 INTERGENIC
3L	11373304	3L_11373304_SNP [dm3] 3L_11380204_SNP [dm6]	T	C	2.533e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2828141	2L_2828141_SNP [dm3] 2L_2828141_SNP [dm6]	T	A	2.538e^-4	1	INTRON Duox
2R	13493842	2R_13493842_SNP [dm3] 2R_17606337_SNP [dm6]	G	A	2.549e^-4	1	SYNONYMOUS_CODING CG10936
X	16049118	X_16049118_SNP [dm3] X_16155085_SNP [dm6]	T	A	2.552e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	9663445	2L_9663445_SNP [dm3] 2L_9663445_SNP [dm6]	C	T	2.556e^-4	1	INTERGENIC
2R	10260984	2R_10260984_SNP [dm3] 2R_14373479_SNP [dm6]	T	C	2.557e^-4	1	NON_SYNONYMOUS_CODING Obp50d DOWNSTREAM CG34185 & 3 others
2R	7886452	2R_7886452_SNP [dm3] 2R_11998947_SNP [dm6]	A	C	2.557e^-4	1	INTERGENIC
3L	7947794	3L_7947794_SNP [dm3] 3L_7954694_SNP [dm6]	A	T	2.572e^-4	1	INTERGENIC
X	10477889	X_10477889_SNP [dm3] X_10583856_SNP [dm6]	T	C	2.574e^-4	1	INTRON spri	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3598758	3L_3598758_DEL [dm3] 3L_3598758_DEL [dm6]	GG	G	2.600e^-4	1	INTRON Eip63E	TF binding site mE1_TFBS_cad
2L	3859806	2L_3859806_SNP [dm3] 2L_3859806_SNP [dm6]	A	G	2.627e^-4	1	INTERGENIC
2R	17007478	2R_17007478_SNP [dm3] 2R_21119973_SNP [dm6]	A	G	2.633e^-4	1	SYNONYMOUS_CODING CG9394 INTRON ktub	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10004842	X_10004842_INS [dm3] X_10110809_INS [dm6]	A	AA	2.647e^-4	1	INTRON RhoU
2L	3351683	2L_3351683_SNP [dm3] 2L_3351683_SNP [dm6]	T	C	2.650e^-4	1	INTRON E23
2R	19445685	2R_19445685_SNP [dm3] 2R_23558162_SNP [dm6]	G	C	2.672e^-4	1	SYNONYMOUS_CODING ItgalphaPS5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25141390	3R_25141390_SNP [dm3] 3R_29315668_SNP [dm6]	G	C	2.675e^-4	1	UTR_3_PRIME Cnx99A DOWNSTREAM Cnx99A
3R	21999759	3R_21999759_SNP [dm3] 3R_26174037_SNP [dm6]	T	A	2.676e^-4	1	INTRON CG31323
3L	23862404	3L_23862404_SNP [dm3] 3L_23869304_SNP [dm6]	A	T	2.678e^-4	1	INTRON CG40470	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	6800842	3L_6800842_SNP [dm3] 3L_6807742_SNP [dm6]	C	A	2.687e^-4	1	INTERGENIC
X	9589543	X_9589543_SNP [dm3] X_9695510_SNP [dm6]	C	T	2.692e^-4	1	INTRON btd	TF binding site BDTNP1_TFBS_dl
3R	2689103	3R_2689103_SNP [dm3] 3R_6863381_SNP [dm6]	T	A	2.693e^-4	1	UPSTREAM ftz INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	2610081	X_2610081_SNP [dm3] X_2716048_SNP [dm6]	G	A	2.698e^-4	1	NON_SYNONYMOUS_CODING CG2694	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1418786	3L_1418786_SNP [dm3] 3L_1418786_SNP [dm6]	G	C	2.709e^-4	1	DOWNSTREAM FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
2R	17978041	2R_17978041_SNP [dm3] 2R_22090536_SNP [dm6]	A	C	2.710e^-4	1	NON_SYNONYMOUS_CODING CG43393 DOWNSTREAM CG44163 & 1 other
2R	16794307	2R_16794307_SNP [dm3] 2R_20906802_SNP [dm6]	T	A	2.746e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
3R	23160586	3R_23160586_INS [dm3] 3R_27334864_INS [dm6]	G	GTGGA	2.758e^-4	1	INTERGENIC
3R	2721900	3R_2721900_SNP [dm3] 3R_6896178_SNP [dm6]	C	T	2.765e^-4	1	UPSTREAM CR44932 DOWNSTREAM Antp INTERGENIC
2L	2553128	2L_2553128_SNP [dm3] 2L_2553128_SNP [dm6]	C	A	2.777e^-4	1	UPSTREAM CG3515 INTERGENIC
3L	5683631	3L_5683631_SNP [dm3] 3L_5690531_SNP [dm6]	G	T	2.783e^-4	1	UPSTREAM sif INTRON sif	TF binding site mE1_TFBS_cad
2L	8129684	2L_8129684_SNP [dm3] 2L_8129684_SNP [dm6]	T	A	2.789e^-4	1	INTRON CG8668
3L	4034177	3L_4034177_SNP [dm3] 3L_4034177_SNP [dm6]	G	A	2.795e^-4	1	SYNONYMOUS_CODING Gr64e UTR_3_PRIME Gr64d DOWNSTREAM Gr64d EXON CR45042
2L	3861576	2L_3861576_SNP [dm3] 2L_3861576_SNP [dm6]	C	T	2.796e^-4	1	INTRON CR44078	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
X	7943668	X_7943668_SNP [dm3] X_8049635_SNP [dm6]	G	A	2.803e^-4	1	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
2R	16311233	2R_16311233_INS [dm3] 2R_20423728_INS [dm6]	T	TT	2.816e^-4	1	UPSTREAM CG12484 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	16690149	3L_16690149_SNP [dm3] 3L_16697049_SNP [dm6]	G	A	2.824e^-4	1	INTRON CR45179 & 2 others
2L	2691565	2L_2691565_SNP [dm3] 2L_2691565_SNP [dm6]	G	C	2.826e^-4	1	INTRON CG31690
3R	22827457	3R_22827457_SNP [dm3] 3R_27001735_SNP [dm6]	G	C	2.854e^-4	1	SYNONYMOUS_CODING CG31077 INTRON RYa-R	TF binding site mE1_TFBS_sens
X	7951804	X_7951804_SNP [dm3] X_8057771_SNP [dm6]	A	T	2.855e^-4	1	INTRON fs_1_h	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12622118	3L_12622118_DEL [dm3] 3L_12629018_DEL [dm6]	AG	A	2.865e^-4	1	INTRON CR32111
2R	13118470	2R_13118470_INS [dm3] 2R_17230965_INS [dm6]	C	CC	2.873e^-4	1	INTRON mbl
X	19566051	X_19566051_SNP [dm3] X_19672018_SNP [dm6]	A	C	2.883e^-4	1	SYNONYMOUS_CODING Zw DOWNSTREAM et	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3703184	3L_3703184_SNP [dm3] 3L_3703184_SNP [dm6]	G	T	2.884e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
X	13509126	X_13509126_DEL [dm3] X_13615093_DEL [dm6]	TGCTGGT	T	2.904e^-4	1	CODON_DELETION tth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	7901487	2R_7901487_SNP [dm3] 2R_12013982_SNP [dm6]	C	T	2.906e^-4	1	SPLICE_SITE_REGION otk INTRON otk
3L	14558955	3L_14558955_SNP [dm3] 3L_14565855_SNP [dm6]	G	A	2.906e^-4	1	INTERGENIC
2R	10207701	2R_10207701_INS [dm3] 2R_14320196_INS [dm6]	T	TTT	2.909e^-4	1	INTRON Shroom
3L	16287714	3L_16287714_INS [dm3] 3L_16294614_INS [dm6]	GGA	CCTAATGCCTAATT...	2.921e^-4	1	DOWNSTREAM CG4962 INTERGENIC
X	20463759	X_20463759_SNP [dm3] X_20592732_SNP [dm6]	C	A	2.928e^-4	1	SYNONYMOUS_CODING RunxA	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6240091	3R_6240091_SNP [dm3] 3R_10414369_SNP [dm6]	G	C	2.943e^-4	1	NON_SYNONYMOUS_CODING CG6345 DOWNSTREAM Rrp46	TF binding site mE1_TFBS_cad
3L	11630195	3L_11630195_SNP [dm3] 3L_11637095_SNP [dm6]	G	C	2.945e^-4	1	INTRON CG32091
3L	14559636	3L_14559636_SNP [dm3] 3L_14566536_SNP [dm6]	G	A	2.946e^-4	1	UPSTREAM CG42758 INTERGENIC
3L	14559726	3L_14559726_SNP [dm3] 3L_14566626_SNP [dm6]	T	C	2.946e^-4	1	UPSTREAM CG42758 INTERGENIC
X	2536461	X_2536461_SNP [dm3] X_2642428_SNP [dm6]	A	T	2.969e^-4	1	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	9796243	2R_9796243_SNP [dm3] 2R_13908738_SNP [dm6]	C	T	2.969e^-4	1	INTRON shot
3R	22065006	3R_22065006_SNP [dm3] 3R_26239284_SNP [dm6]	C	T	2.970e^-4	1	INTRON CR42745
2R	18643473	2R_18643473_SNP [dm3] 2R_22755968_SNP [dm6]	G	T	2.982e^-4	1	UPSTREAM CR30267 DOWNSTREAM CG13526 INTRON CG42260	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11567729	3L_11567729_SNP [dm3] 3L_11574629_SNP [dm6]	G	A	2.984e^-4	1	UTR_5_PRIME CG33490 DOWNSTREAM CG33489
3L	5683418	3L_5683418_SNP [dm3] 3L_5690318_SNP [dm6]	A	G	2.986e^-4	1	INTRON sif
X	19998119	X_19998119_SNP [dm3] X_20104086_SNP [dm6]	A	C	2.989e^-4	1	INTERGENIC
3L	9430419	3L_9430419_SNP [dm3] 3L_9437319_SNP [dm6]	C	T	2.990e^-4	1	SYNONYMOUS_CODING MTF-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7024504	3L_7024504_SNP [dm3] 3L_7031404_SNP [dm6]	G	A	2.997e^-4	1	INTRON Mp
2L	5425713	2L_5425713_SNP [dm3] 2L_5425713_SNP [dm6]	C	A	3.005e^-4	1	INTERGENIC
3L	2412956	3L_2412956_SNP [dm3] 3L_2412956_SNP [dm6]	T	C	3.006e^-4	1	UPSTREAM CG45186 INTRON CG45186
2L	4493659	2L_4493659_SNP [dm3] 2L_4493659_SNP [dm6]	T	C	3.029e^-4	1	SYNONYMOUS_CODING dp INTRON dp
2L	7749039	2L_7749039_SNP [dm3] 2L_7749039_SNP [dm6]	A	T	3.033e^-4	1	INTERGENIC
2R	16311013	2R_16311013_SNP [dm3] 2R_20423508_SNP [dm6]	C	A	3.035e^-4	1	UPSTREAM CG12484 INTERGENIC
3L	10418541	3L_10418541_SNP [dm3] 3L_10425441_SNP [dm6]	A	G	3.041e^-4	1	INTERGENIC
3R	932739	3R_932739_SNP [dm3] 3R_5107017_SNP [dm6]	C	A	3.041e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22009508	3R_22009508_SNP [dm3] 3R_26183786_SNP [dm6]	T	C	3.068e^-4	1	INTRON CG31323
3R	21973529	3R_21973529_SNP [dm3] 3R_26147807_SNP [dm6]	A	C	3.073e^-4	1	INTERGENIC
3L	13901883	3L_13901883_SNP [dm3] 3L_13908783_SNP [dm6]	A	G	3.079e^-4	1	SYNONYMOUS_CODING Rgl	TF binding site mE1_TFBS_sens
2L	18504468	2L_18504468_SNP [dm3] 2L_18504468_SNP [dm6]	A	T	3.085e^-4	1	UPSTREAM kon INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22842582	3R_22842582_SNP [dm3] 3R_27016860_SNP [dm6]	C	G	3.096e^-4	1	DOWNSTREAM CG17192 INTRON RYa-R
X	19247063	X_19247063_SNP [dm3] X_19353030_SNP [dm6]	A	G	3.106e^-4	1	UPSTREAM kek5 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	9606269	X_9606269_DEL [dm3] X_9712236_DEL [dm6]	TATACATCCGT...	T	3.107e^-4	1	INTERGENIC
3R	14992890	3R_14992890_SNP [dm3] 3R_19167168_SNP [dm6]	A	T	3.114e^-4	1	INTRON sqz
3R	14992939	3R_14992939_SNP [dm3] 3R_19167217_SNP [dm6]	C	T	3.114e^-4	1	INTRON sqz
3R	6523372	3R_6523372_SNP [dm3] 3R_10697650_SNP [dm6]	A	G	3.114e^-4	1	UTR_5_PRIME CG14683 INTRON pug	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	7947800	3L_7947800_SNP [dm3] 3L_7954700_SNP [dm6]	T	A	3.115e^-4	1	INTERGENIC
2L	516184	2L_516184_SNP [dm3] 2L_516184_SNP [dm6]	C	T	3.118e^-4	1	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	18156079	X_18156079_SNP [dm3] X_18262046_SNP [dm6]	T	C	3.124e^-4	1	INTERGENIC
2L	516220	2L_516220_SNP [dm3] 2L_516220_SNP [dm6]	C	T	3.147e^-4	1	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9132185	2L_9132185_INS [dm3] 2L_9132185_INS [dm6]	ATG	GACAA	3.147e^-4	1	INTRON CG32982
3R	12496079	3R_12496079_SNP [dm3] 3R_16670357_SNP [dm6]	C	T	3.153e^-4	1	INTRON Ubx
3L	23275428	3L_23275428_SNP [dm3] 3L_23282328_SNP [dm6]	G	A	3.159e^-4	1	INTRON nAChRalpha4	transposable element FlyBase
2R	12148290	2R_12148290_SNP [dm3] 2R_16260785_SNP [dm6]	A	T	3.163e^-4	1	UPSTREAM CngA INTERGENIC
2L	13332057	2L_13332057_DEL [dm3] 2L_13332057_DEL [dm6]	GCACCTG	G	3.168e^-4	1	UPSTREAM CG43778 INTERGENIC
3L	953414	3L_953414_SNP [dm3] 3L_953414_SNP [dm6]	T	C	3.178e^-4	1	INTRON Glut1
2L	18143956	2L_18143956_SNP [dm3] 2L_18143956_SNP [dm6]	A	G	3.180e^-4	1	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Stat92E
X	8935873	X_8935873_DEL [dm3] X_9041840_DEL [dm6]	AA	A	3.182e^-4	1	UPSTREAM CG42388 INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2975082	3L_2975082_SNP [dm3] 3L_2975082_SNP [dm6]	A	G	3.202e^-4	1	DOWNSTREAM CR44530 INTERGENIC
2R	3064805	2R_3064805_SNP [dm3] 2R_7177300_SNP [dm6]	C	T	3.207e^-4	1	SYNONYMOUS_CODING CG11060 INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7215861	3L_7215861_SNP [dm3] 3L_7222761_SNP [dm6]	A	T	3.218e^-4	1	EXON CR45410
2R	7901486	2R_7901486_SNP [dm3] 2R_12013981_SNP [dm6]	A	T	3.221e^-4	1	INTRON otk
3L	7641627	3L_7641627_SNP [dm3] 3L_7648527_SNP [dm6]	C	A	3.237e^-4	1	INTERGENIC
2L	3909754	2L_3909754_SNP [dm3] 2L_3909754_SNP [dm6]	C	T	3.239e^-4	1	INTRON fred
2R	16538402	2R_16538402_SNP [dm3] 2R_20650897_SNP [dm6]	A	G	3.240e^-4	1	INTRON Lrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	6246653	2R_6246653_SNP [dm3] 2R_10359148_SNP [dm6]	A	G	3.246e^-4	1	INTRON CG42732	TF binding site BDTNP1_TFBS_twi
2L	9407925	2L_9407925_DEL [dm3] 2L_9407925_DEL [dm6]	TAAGATATCTT...	T	3.255e^-4	1	INTRON Shawl
3L	6093977	3L_6093977_SNP [dm3] 3L_6100877_SNP [dm6]	G	T	3.259e^-4	1	INTRON Ets65A
3R	21730909	3R_21730909_SNP [dm3] 3R_25905187_SNP [dm6]	C	T	3.265e^-4	1	DOWNSTREAM CR43259 INTRON CR43259
X	3557170	X_3557170_SNP [dm3] X_3663137_SNP [dm6]	G	C	3.272e^-4	1	INTRON AstA-R1	transposable element FlyBase
X	8183193	X_8183193_SNP [dm3] X_8289160_SNP [dm6]	G	C	3.280e^-4	1	INTRON nAChRalpha3
2L	4991310	2L_4991310_SNP [dm3] 2L_4991310_SNP [dm6]	C	A	3.291e^-4	1	INTRON CG34126	TF binding site mE1_TFBS_sens
3L	4978928	3L_4978928_SNP [dm3] 3L_4978928_SNP [dm6]	G	T	3.298e^-4	1	INTRON Con	TF binding site BDTNP1_TFBS_da
2L	1746794	2L_1746794_DEL [dm3] 2L_1746794_DEL [dm6]	AA	A	3.305e^-4	1	INTRON CG17646
2R	3724317	2R_3724317_SNP [dm3] 2R_7836812_SNP [dm6]	C	T	3.308e^-4	1	NON_SYNONYMOUS_CODING Dgk UTR_3_PRIME Dgk
3L	5501782	3L_5501782_SNP [dm3] 3L_5508682_SNP [dm6]	C	A	3.314e^-4	1	INTRON CG34342
2L	18714015	2L_18714015_SNP [dm3] 2L_18714015_SNP [dm6]	T	A	3.315e^-4	1	UPSTREAM Irk3 DOWNSTREAM CG10348 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	13929916	3L_13929916_DEL [dm3] 3L_13936816_DEL [dm6]	GG	G	3.331e^-4	1	INTERGENIC
2L	11092178	2L_11092178_SNP [dm3] 2L_11092178_SNP [dm6]	C	T	3.346e^-4	1	INTRON CG4705
2R	9315613	2R_9315613_INS [dm3] 2R_13428108_INS [dm6]	G	GAAATACAAGG...	3.348e^-4	1	INTRON CG42321	TF binding site BDTNP1_TFBS_twi
3R	25909190	3R_25909190_SNP [dm3] 3R_30083468_SNP [dm6]	A	G	3.349e^-4	1	INTRON sima
3R	11244688	3R_11244688_SNP [dm3] 3R_15418966_SNP [dm6]	C	T	3.352e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	15479810	2R_15479810_SNP [dm3] 2R_19592305_SNP [dm6]	T	G	3.354e^-4	1	INTRON sm
3L	481562	3L_481562_SNP [dm3] 3L_481562_SNP [dm6]	A	T	3.357e^-4	1	INTRON klar
2L	12137494	2L_12137494_SNP [dm3] 2L_12137494_SNP [dm6]	A	T	3.357e^-4	1	UPSTREAM Gr33a INTERGENIC
2R	10223163	2R_10223163_SNP [dm3] 2R_14335658_SNP [dm6]	A	T	3.365e^-4	1	INTRON Shroom	TF binding site mE1_TFBS_cad
2L	2544735	2L_2544735_SNP [dm3] 2L_2544735_SNP [dm6]	T	A	3.370e^-4	1	INTERGENIC
X	20463651	X_20463651_SNP [dm3] X_20592624_SNP [dm6]	G	A	3.371e^-4	1	SYNONYMOUS_CODING RunxA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5502698	3L_5502698_SNP [dm3] 3L_5509598_SNP [dm6]	A	C	3.376e^-4	1	INTRON CG34342	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11953859	3L_11953859_SNP [dm3] 3L_11960759_SNP [dm6]	A	T	3.377e^-4	1	SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
2R	16399843	2R_16399843_SNP [dm3] 2R_20512338_SNP [dm6]	G	T	3.381e^-4	1	DOWNSTREAM CR44648 & 2 others INTERGENIC
2R	20146475	2R_20146475_SNP [dm3] 2R_24258952_SNP [dm6]	A	G	3.388e^-4	1	INTRON CG3376
X	7943550	X_7943550_SNP [dm3] X_8049517_SNP [dm6]	T	C	3.394e^-4	1	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
2R	10368297	2R_10368297_SNP [dm3] 2R_14480792_SNP [dm6]	C	T	3.407e^-4	1	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	14308525	3R_14308525_SNP [dm3] 3R_18482803_SNP [dm6]	T	G	3.425e^-4	1	INTRON fru
2R	10366565	2R_10366565_SNP [dm3] 2R_14479060_SNP [dm6]	T	A	3.441e^-4	1	INTERGENIC
2L	10382900	2L_10382900_SNP [dm3] 2L_10382900_SNP [dm6]	T	A	3.445e^-4	1	DOWNSTREAM gny INTRON CG5096
3L	6265687	3L_6265687_SNP [dm3] 3L_6272587_SNP [dm6]	A	G	3.452e^-4	1	INTERGENIC
X	4985806	X_4985806_SNP [dm3] X_5091773_SNP [dm6]	A	C	3.452e^-4	1	INTRON rg & 1 other
2R	17106293	2R_17106293_SNP [dm3] 2R_21218788_SNP [dm6]	A	T	3.456e^-4	1	UTR_3_PRIME ASPP	TF binding site mE1_TFBS_cad
3L	760355	3L_760355_SNP [dm3] 3L_760355_SNP [dm6]	T	C	3.461e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7405022	2L_7405022_SNP [dm3] 2L_7405022_SNP [dm6]	T	A	3.468e^-4	1	UPSTREAM CG5177 DOWNSTREAM CG5171 INTERGENIC
3L	5683628	3L_5683628_SNP [dm3] 3L_5690528_SNP [dm6]	A	C	3.474e^-4	1	UPSTREAM sif INTRON sif	TF binding site mE1_TFBS_cad
2L	12161236	2L_12161236_SNP [dm3] 2L_12161236_SNP [dm6]	C	T	3.476e^-4	1	UPSTREAM CG31861 INTRON CG31760
X	13309856	X_13309856_SNP [dm3] X_13415823_SNP [dm6]	A	G	3.479e^-4	1	NON_SYNONYMOUS_CODING Set2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22832435	3R_22832435_SNP [dm3] 3R_27006713_SNP [dm6]	T	C	3.485e^-4	1	SYNONYMOUS_CODING CG6295 INTRON RYa-R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4851974	3R_4851974_SNP [dm3] 3R_9026252_SNP [dm6]	C	T	3.488e^-4	1	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	21330528	3L_21330528_INS [dm3] 3L_21337428_INS [dm6]	C	CATC	3.497e^-4	1	DOWNSTREAM CG7324 INTRON CG7338	TF binding site mE1_TFBS_cad
3L	13929248	3L_13929248_SNP [dm3] 3L_13936148_SNP [dm6]	A	G	3.501e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	4034144	3L_4034144_SNP [dm3] 3L_4034144_SNP [dm6]	C	A	3.512e^-4	1	DOWNSTREAM Gr64d INTRON Gr64d & 1 other EXON CR45042
3L	4034149	3L_4034149_DEL [dm3] 3L_4034149_DEL [dm6]	ACG	A	3.512e^-4	1	DOWNSTREAM Gr64d INTRON Gr64d & 1 other EXON CR45042
3L	7221445	3L_7221445_SNP [dm3] 3L_7228345_SNP [dm6]	G	T	3.517e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	3422119	2R_3422119_DEL [dm3] 2R_7534614_DEL [dm6]	TTTACGTGTTTATTC...	A	3.521e^-4	1	UPSTREAM Cyt-b5 INTRON Cyt-b5	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	14308465	3R_14308465_SNP [dm3] 3R_18482743_SNP [dm6]	T	G	3.524e^-4	1	INTRON fru
3R	18909477	3R_18909477_SNP [dm3] 3R_23083755_SNP [dm6]	G	T	3.532e^-4	1	INTRON CG13830	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8821497	2R_8821497_SNP [dm3] 2R_12933992_SNP [dm6]	T	C	3.537e^-4	1	UTR_5_PRIME CG17019 DOWNSTREAM CG13322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	9690016	2R_9690016_SNP [dm3] 2R_13802511_SNP [dm6]	A	G	3.549e^-4	1	INTRON Cpr50Cb
2L	6866250	2L_6866250_SNP [dm3] 2L_6866250_SNP [dm6]	T	C	3.560e^-4	1	INTRON Nha1
2L	5636498	2L_5636498_SNP [dm3] 2L_5636498_SNP [dm6]	G	C	3.577e^-4	1	INTRON CG31646
2L	516157	2L_516157_SNP [dm3] 2L_516157_SNP [dm6]	A	T	3.584e^-4	1	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	2754014	3R_2754014_SNP [dm3] 3R_6928292_SNP [dm6]	G	T	3.601e^-4	1	INTRON Antp
2R	15244344	2R_15244344_SNP [dm3] 2R_19356839_SNP [dm6]	A	T	3.603e^-4	1	UPSTREAM Rgk1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	7462537	3L_7462537_SNP [dm3] 3L_7469437_SNP [dm6]	T	A	3.610e^-4	1	DOWNSTREAM CG8543 & 3 others INTERGENIC
2L	11092228	2L_11092228_SNP [dm3] 2L_11092228_SNP [dm6]	A	T	3.615e^-4	1	SYNONYMOUS_CODING CG4705
2R	7901483	2R_7901483_SNP [dm3] 2R_12013978_SNP [dm6]	C	A	3.617e^-4	1	INTRON otk
2R	17401341	2R_17401341_SNP [dm3] 2R_21513836_SNP [dm6]	T	C	3.621e^-4	1	DOWNSTREAM MESK2 INTRON MESK2	TF binding site mE1_TFBS_Trl
3L	6245949	3L_6245949_SNP [dm3] 3L_6252849_SNP [dm6]	T	C	3.625e^-4	1	INTRON Best2
3L	12622121	3L_12622121_DEL [dm3] 3L_12629021_DEL [dm6]	AAAAG	A	3.625e^-4	1	INTRON CR32111
3L	12622134	3L_12622134_DEL [dm3] 3L_12629034_DEL [dm6]	GCCAGA	G	3.625e^-4	1	INTRON CR32111
3L	16287685	3L_16287685_SNP [dm3] 3L_16294585_SNP [dm6]	C	T	3.645e^-4	1	DOWNSTREAM CG4962 INTERGENIC
X	13309854	X_13309854_SNP [dm3] X_13415821_SNP [dm6]	G	A	3.657e^-4	1	SYNONYMOUS_CODING Set2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7958061	X_7958061_SNP [dm3] X_8064028_SNP [dm6]	G	C	3.661e^-4	1	NON_SYNONYMOUS_CODING mys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25743674	3R_25743674_SNP [dm3] 3R_29917952_SNP [dm6]	G	A	3.663e^-4	1	SYNONYMOUS_CODING trp UTR_3_PRIME trp
3L	17042758	3L_17042758_SNP [dm3] 3L_17049658_SNP [dm6]	G	A	3.669e^-4	1	UTR_5_PRIME rogdi
3L	13916089	3L_13916089_SNP [dm3] 3L_13922989_SNP [dm6]	C	A	3.670e^-4	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	19095477	2R_19095477_SNP [dm3] 2R_23207954_SNP [dm6]	A	T	3.680e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_Kr
3L	706498	3L_706498_SNP [dm3] 3L_706498_SNP [dm6]	G	C	3.689e^-4	1	NON_SYNONYMOUS_CODING CG13895 DOWNSTREAM CR44514	TF binding site mE1_TFBS_sens
3R	21999503	3R_21999503_SNP [dm3] 3R_26173781_SNP [dm6]	A	C	3.698e^-4	1	INTRON CG31323
X	3250367	X_3250367_SNP [dm3] X_3356334_SNP [dm6]	T	A	3.702e^-4	1	INTERGENIC
X	16134199	X_16134199_SNP [dm3] X_16240166_SNP [dm6]	G	A	3.705e^-4	1	INTERGENIC
3L	6093921	3L_6093921_SNP [dm3] 3L_6100821_SNP [dm6]	A	G	3.707e^-4	1	INTRON Ets65A
3L	9966134	3L_9966134_SNP [dm3] 3L_9973034_SNP [dm6]	A	T	3.709e^-4	1	START_GAINED vnc UTR_5_PRIME vnc UPSTREAM CG6674 INTRON vnc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
X	10478193	X_10478193_SNP [dm3] X_10584160_SNP [dm6]	G	A	3.711e^-4	1	INTRON spri	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
X	7500650	X_7500650_SNP [dm3] X_7606617_SNP [dm6]	C	T	3.711e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	4985812	X_4985812_SNP [dm3] X_5091779_SNP [dm6]	G	A	3.716e^-4	1	INTRON rg & 1 other
X	9476888	X_9476888_SNP [dm3] X_9582855_SNP [dm6]	A	G	3.723e^-4	1	UPSTREAM CR45540 INTERGENIC
X	11812857	X_11812857_SNP [dm3] X_11918824_SNP [dm6]	T	A	3.736e^-4	1	UPSTREAM CR32661 DOWNSTREAM CR43157 INTERGENIC
X	12780592	X_12780592_SNP [dm3] X_12886559_SNP [dm6]	G	C	3.752e^-4	1	INTRON Pde9
2R	18648107	2R_18648107_SNP [dm3] 2R_22760602_SNP [dm6]	C	T	3.758e^-4	1	INTRON CG42260	TF binding site mE1_TFBS_cad
X	16407563	X_16407563_SNP [dm3] X_16513530_SNP [dm6]	A	G	3.766e^-4	1	INTRON para
2R	9686993	2R_9686993_SNP [dm3] 2R_13799488_SNP [dm6]	G	T	3.766e^-4	1	INTRON Cpr50Cb
2R	16399865	2R_16399865_SNP [dm3] 2R_20512360_SNP [dm6]	C	T	3.779e^-4	1	DOWNSTREAM CR44648 & 2 others INTERGENIC
2L	7023061	2L_7023061_SNP [dm3] 2L_7023061_SNP [dm6]	T	G	3.782e^-4	1	DOWNSTREAM Pcp INTRON ade3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	19179918	3R_19179918_SNP [dm3] 3R_23354196_SNP [dm6]	C	G	3.788e^-4	1	NON_SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_sens
X	20403964	X_20403964_SNP [dm3] X_20532937_SNP [dm6]	G	A	3.791e^-4	1	INTERGENIC
2R	16352627	2R_16352627_SNP [dm3] 2R_20465122_SNP [dm6]	A	C	3.802e^-4	1	INTRON CG12484
2L	17048602	2L_17048602_SNP [dm3] 2L_17048602_SNP [dm6]	T	A	3.805e^-4	1	UPSTREAM CG15136 INTERGENIC
3R	7166194	3R_7166194_SNP [dm3] 3R_11340472_SNP [dm6]	A	G	3.822e^-4	1	INTRON pros	TF binding site BDTNP1_TFBS_dl
2L	14056872	2L_14056872_SNP [dm3] 2L_14056872_SNP [dm6]	T	G	3.840e^-4	1	INTRON nAChRalpha5
X	9476541	X_9476541_SNP [dm3] X_9582508_SNP [dm6]	A	C	3.845e^-4	1	UPSTREAM CR45540 INTERGENIC
2R	16759910	2R_16759910_INS [dm3] 2R_20872405_INS [dm6]	T	TGCCCTTT	3.854e^-4	1	INTRON Ipk1
3L	839306	3L_839306_SNP [dm3] 3L_839306_SNP [dm6]	G	A	3.858e^-4	1	SYNONYMOUS_CODING CG13887 UTR_3_PRIME CG13887 DOWNSTREAM CG13902
X	8375339	X_8375339_SNP [dm3] X_8481306_SNP [dm6]	A	C	3.868e^-4	1	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
2L	13203107	2L_13203107_SNP [dm3] 2L_13203107_SNP [dm6]	A	G	3.875e^-4	1	UTR_5_PRIME CG16972 UPSTREAM Pect	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu
3L	12773772	3L_12773772_SNP [dm3] 3L_12780672_SNP [dm6]	C	A	3.878e^-4	1	NON_SYNONYMOUS_CODING CG10969 UPSTREAM CG17666
3L	14830778	3L_14830778_SNP [dm3] 3L_14837678_SNP [dm6]	A	T	3.894e^-4	1	INTRON CG17839
2R	16772567	2R_16772567_SNP [dm3] 2R_20885062_SNP [dm6]	G	T	3.910e^-4	1	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
X	17381353	X_17381353_SNP [dm3] X_17487320_SNP [dm6]	T	G	3.910e^-4	1	INTRON CG43658	TF binding site mE1_TFBS_inv
2L	1432875	2L_1432875_SNP [dm3] 2L_1432875_SNP [dm6]	C	T	3.912e^-4	1	EXON snRNA:U3:22A
3L	1022628	3L_1022628_SNP [dm3] 3L_1022628_SNP [dm6]	C	T	3.932e^-4	1	INTRON trio
3R	10954080	3R_10954080_SNP [dm3] 3R_15128358_SNP [dm6]	T	G	3.933e^-4	1	INTRON CG42788
3L	16755397	3L_16755397_SNP [dm3] 3L_16762297_SNP [dm6]	C	A	3.944e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	9043484	3L_9043484_SNP [dm3] 3L_9050384_SNP [dm6]	A	G	3.946e^-4	1	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_cad
X	19219007	X_19219007_SNP [dm3] X_19324974_SNP [dm6]	C	G	3.947e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	7161087	3L_7161087_SNP [dm3] 3L_7167987_SNP [dm6]	T	C	3.951e^-4	1	SYNONYMOUS_CODING Dscam2	TF binding site mE1_TFBS_chinmo
3R	19179252	3R_19179252_SNP [dm3] 3R_23353530_SNP [dm6]	T	C	3.951e^-4	1	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14907995	3L_14907995_SNP [dm3] 3L_14914895_SNP [dm6]	G	C	3.959e^-4	1	INTRON DCX-EMAP
X	8375354	X_8375354_SNP [dm3] X_8481321_SNP [dm6]	A	C	3.962e^-4	1	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
2L	607184	2L_607184_SNP [dm3] 2L_607184_SNP [dm6]	A	T	3.963e^-4	1	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	607185	2L_607185_SNP [dm3] 2L_607185_SNP [dm6]	C	T	3.963e^-4	1	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18587034	3L_18587034_SNP [dm3] 3L_18593934_SNP [dm6]	C	T	3.964e^-4	1	UPSTREAM term INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3354879	2L_3354879_SNP [dm3] 2L_3354879_SNP [dm6]	A	T	3.970e^-4	1	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	10425892	2R_10425892_SNP [dm3] 2R_14538387_SNP [dm6]	G	T	3.975e^-4	1	INTRON ttv
3R	14992970	3R_14992970_SNP [dm3] 3R_19167248_SNP [dm6]	C	G	3.979e^-4	1	INTRON sqz
X	2536506	X_2536506_SNP [dm3] X_2642473_SNP [dm6]	C	T	3.992e^-4	1	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	5502687	3L_5502687_SNP [dm3] 3L_5509587_SNP [dm6]	G	C	3.997e^-4	1	INTRON CG34342	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12128483	2R_12128483_SNP [dm3] 2R_16240978_SNP [dm6]	G	A	4.001e^-4	1	UTR_3_PRIME CG15708 UPSTREAM krimp
X	19656850	X_19656850_SNP [dm3] X_19762817_SNP [dm6]	T	G	4.006e^-4	1	UTR_5_PRIME CG12702 UPSTREAM CG12702 INTRON CG12702	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12440919	2R_12440919_SNP [dm3] 2R_16553414_SNP [dm6]	T	C	4.012e^-4	1	INTRON Syn2	TF binding site BDTNP1_TFBS_twi
2L	12042268	2L_12042268_DEL [dm3] 2L_12042268_DEL [dm6]	TTGTA	CC	4.015e^-4	1	INTRON CG6785	TF binding site mE1_TFBS_chinmo
2L	10646204	2L_10646204_SNP [dm3] 2L_10646204_SNP [dm6]	G	C	4.032e^-4	1	UPSTREAM CG17097 DOWNSTREAM CG18284 INTERGENIC
3R	21999646	3R_21999646_SNP [dm3] 3R_26173924_SNP [dm6]	A	C	4.035e^-4	1	INTRON CG31323
3L	17042741	3L_17042741_SNP [dm3] 3L_17049641_SNP [dm6]	G	A	4.055e^-4	1	UTR_5_PRIME rogdi
2L	6516817	2L_6516817_SNP [dm3] 2L_6516817_SNP [dm6]	C	A	4.060e^-4	1	INTRON CG31637
2L	11151628	2L_11151628_SNP [dm3] 2L_11151628_SNP [dm6]	T	A	4.063e^-4	1	UTR_3_PRIME CG6287	TF binding site mE1_TFBS_cad
X	16941616	X_16941616_SNP [dm3] X_17047583_SNP [dm6]	G	T	4.066e^-4	1	INTRON CG45002
X	10004838	X_10004838_INS [dm3] X_10110805_INS [dm6]	G	GAAAA	4.082e^-4	1	INTRON RhoU
2R	18042878	2R_18042878_SNP [dm3] 2R_22155373_SNP [dm6]	G	A	4.088e^-4	1	INTRON a	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4980015	3L_4980015_SNP [dm3] 3L_4980015_SNP [dm6]	G	A	4.110e^-4	1	UTR_3_PRIME CG17030 UPSTREAM CR45685 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16757677	2R_16757677_SNP [dm3] 2R_20870172_SNP [dm6]	C	A	4.125e^-4	1	UPSTREAM IM4 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	21730121	3R_21730121_DEL [dm3] 3R_25904399_DEL [dm6]	CC	C	4.137e^-4	1	DOWNSTREAM CG31089 EXON CR43259
2R	13118399	2R_13118399_SNP [dm3] 2R_17230894_SNP [dm6]	G	A	4.150e^-4	1	INTRON mbl
2R	15243067	2R_15243067_SNP [dm3] 2R_19355562_SNP [dm6]	T	C	4.156e^-4	1	INTRON Rgk1
2R	5951262	2R_5951262_SNP [dm3] 2R_10063757_SNP [dm6]	G	T	4.158e^-4	1	NON_SYNONYMOUS_CODING CG2292 DOWNSTREAM magu
3R	14992527	3R_14992527_SNP [dm3] 3R_19166805_SNP [dm6]	T	G	4.158e^-4	1	INTRON sqz	TF binding site BDTNP1_TFBS_dl
3L	3696850	3L_3696850_SNP [dm3] 3L_3696850_SNP [dm6]	T	C	4.168e^-4	1	INTERGENIC
3R	14308624	3R_14308624_SNP [dm3] 3R_18482902_SNP [dm6]	G	T	4.169e^-4	1	INTRON fru
X	19656858	X_19656858_SNP [dm3] X_19762825_SNP [dm6]	C	G	4.170e^-4	1	UTR_5_PRIME CG12702 UPSTREAM CG12702 INTRON CG12702	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4356054	2L_4356054_SNP [dm3] 2L_4356054_SNP [dm6]	A	G	4.184e^-4	1	INTERGENIC
2L	6100846	2L_6100846_SNP [dm3] 2L_6100846_SNP [dm6]	C	T	4.185e^-4	1	INTRON stai	TF binding site BDTNP1_TFBS_dl
2R	18050553	2R_18050553_SNP [dm3] 2R_22163048_SNP [dm6]	C	T	4.196e^-4	1	SYNONYMOUS_CODING a DOWNSTREAM CG34206	TF binding site mE1_TFBS_cad
3R	11136970	3R_11136970_SNP [dm3] 3R_15311248_SNP [dm6]	C	T	4.204e^-4	1	UPSTREAM Tm2 INTRON Tm2	regulatory region REDfly_CRMs
3R	9726662	3R_9726662_SNP [dm3] 3R_13900940_SNP [dm6]	T	C	4.211e^-4	1	UPSTREAM ems INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15245457	2R_15245457_SNP [dm3] 2R_19357952_SNP [dm6]	A	T	4.213e^-4	1	UPSTREAM CG11961 INTRON CG11961	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	3792130	3L_3792130_SNP [dm3] 3L_3792130_SNP [dm6]	A	T	4.222e^-4	1	DOWNSTREAM CG32266 INTRON CG32264
2R	19838111	2R_19838111_SNP [dm3] 2R_23950588_SNP [dm6]	G	A	4.231e^-4	1	UPSTREAM fzr2 INTRON CG2970	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	910098	3L_910098_SNP [dm3] 3L_910098_SNP [dm6]	G	T	4.234e^-4	1	SYNONYMOUS_CODING nerfin-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	7899957	2R_7899957_SNP [dm3] 2R_12012452_SNP [dm6]	G	C	4.237e^-4	1	INTRON otk
3L	14773783	3L_14773783_SNP [dm3] 3L_14780683_SNP [dm6]	C	A	4.237e^-4	1	INTRON bmm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2R	16265436	2R_16265436_SNP [dm3] 2R_20377931_SNP [dm6]	C	T	4.243e^-4	1	INTERGENIC
3L	4980012	3L_4980012_SNP [dm3] 3L_4980012_SNP [dm6]	T	A	4.255e^-4	1	UTR_3_PRIME CG17030 UPSTREAM CR45685 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4980030	3L_4980030_SNP [dm3] 3L_4980030_SNP [dm6]	G	A	4.255e^-4	1	UTR_3_PRIME CG17030 UPSTREAM CR45685 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14308549	3R_14308549_SNP [dm3] 3R_18482827_SNP [dm6]	G	A	4.258e^-4	1	INTRON fru
X	3262772	X_3262772_SNP [dm3] X_3368739_SNP [dm6]	G	A	4.264e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	17117298	2R_17117298_SNP [dm3] 2R_21229793_SNP [dm6]	G	A	4.278e^-4	1	INTRON ASPP	TF binding site mE1_TFBS_HSA
2L	19968245	2L_19968245_SNP [dm3] 2L_19968245_SNP [dm6]	T	C	4.278e^-4	1	UPSTREAM Hf DOWNSTREAM CG43861 INTERGENIC
X	8745173	X_8745173_SNP [dm3] X_8851140_SNP [dm6]	C	T	4.282e^-4	1	INTRON CG12075
3L	18087990	3L_18087990_INS [dm3] 3L_18094890_INS [dm6]	G	AA	4.282e^-4	1	INTRON CG13698
3L	18087995	3L_18087995_SNP [dm3] 3L_18094895_SNP [dm6]	G	A	4.282e^-4	1	INTRON CG13698
X	8375346	X_8375346_SNP [dm3] X_8481313_SNP [dm6]	A	G	4.302e^-4	1	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3L	18426907	3L_18426907_DEL [dm3] 3L_18433807_DEL [dm6]	CATTCGGCGTCTCTTAAC...	C	4.306e^-4	1	INTERGENIC
2R	17117854	2R_17117854_SNP [dm3] 2R_21230349_SNP [dm6]	G	T	4.307e^-4	1	INTRON ASPP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7250316	3R_7250316_SNP [dm3] 3R_11424594_SNP [dm6]	T	G	4.311e^-4	1	NON_SYNONYMOUS_CODING CG5270	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25744967	3R_25744967_SNP [dm3] 3R_29919245_SNP [dm6]	T	A	4.330e^-4	1	INTRON trp
2R	20300734	2R_20300734_SNP [dm3] 2R_24413211_SNP [dm6]	C	A	4.335e^-4	1	SYNONYMOUS_CODING CG45068 UTR_5_PRIME CG45069	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	22010741	3R_22010741_INS [dm3] 3R_26185019_INS [dm6]	T	TT	4.372e^-4	1	UTR_3_PRIME CG31323 UPSTREAM CG31086 DOWNSTREAM CG31323	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22010743	3R_22010743_DEL [dm3] 3R_26185021_DEL [dm6]	GCTC	G	4.372e^-4	1	UTR_3_PRIME CG31323 UPSTREAM CG31086 DOWNSTREAM CG31323	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12137532	2L_12137532_SNP [dm3] 2L_12137532_SNP [dm6]	T	C	4.405e^-4	1	UPSTREAM Gr33a INTERGENIC
3R	3136722	3R_3136722_SNP [dm3] 3R_7311000_SNP [dm6]	T	C	4.410e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	8486873	2L_8486873_SNP [dm3] 2L_8486873_SNP [dm6]	G	A	4.419e^-4	1	SYNONYMOUS_CODING d DOWNSTREAM unsRNA:d-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13837063	3L_13837063_SNP [dm3] 3L_13843963_SNP [dm6]	C	T	4.420e^-4	1	UPSTREAM CG8750 INTRON Tsp68C
3L	15062303	3L_15062303_SNP [dm3] 3L_15069203_SNP [dm6]	G	T	4.425e^-4	1	NON_SYNONYMOUS_CODING cp309	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	20402045	X_20402045_SNP [dm3] X_20531018_SNP [dm6]	T	A	4.431e^-4	1	INTERGENIC
3R	932762	3R_932762_SNP [dm3] 3R_5107040_SNP [dm6]	C	T	4.440e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16780420	2L_16780420_SNP [dm3] 2L_16780420_SNP [dm6]	C	T	4.446e^-4	1	INTRON Mhc
2R	18541543	2R_18541543_SNP [dm3] 2R_22654038_SNP [dm6]	A	G	4.446e^-4	1	SYNONYMOUS_CODING Cyp6d2 DOWNSTREAM nsr & 1 other	TF binding site mE1_TFBS_cad
3L	953429	3L_953429_SNP [dm3] 3L_953429_SNP [dm6]	A	G	4.457e^-4	1	INTRON Glut1
2L	2554467	2L_2554467_SNP [dm3] 2L_2554467_SNP [dm6]	C	T	4.460e^-4	1	INTERGENIC
2L	7598429	2L_7598429_SNP [dm3] 2L_7598429_SNP [dm6]	T	G	4.462e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	7598431	2L_7598431_SNP [dm3] 2L_7598431_SNP [dm6]	A	C	4.462e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	24095761	3R_24095761_SNP [dm3] 3R_28270039_SNP [dm6]	T	C	4.463e^-4	1	INTERGENIC
3L	16219900	3L_16219900_SNP [dm3] 3L_16226800_SNP [dm6]	G	A	4.472e^-4	1	SYNONYMOUS_CODING l_3_72Dn
3R	14992525	3R_14992525_SNP [dm3] 3R_19166803_SNP [dm6]	T	G	4.479e^-4	1	INTRON sqz	TF binding site BDTNP1_TFBS_dl
2L	15965398	2L_15965398_SNP [dm3] 2L_15965398_SNP [dm6]	T	G	4.495e^-4	1	INTERGENIC
2R	10206836	2R_10206836_SNP [dm3] 2R_14319331_SNP [dm6]	T	C	4.505e^-4	1	INTRON Shroom
3L	11408176	3L_11408176_SNP [dm3] 3L_11415076_SNP [dm6]	A	G	4.512e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12622130	3L_12622130_SNP [dm3] 3L_12629030_SNP [dm6]	C	T	4.522e^-4	1	INTRON CR32111
X	8375352	X_8375352_SNP [dm3] X_8481319_SNP [dm6]	A	T	4.532e^-4	1	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3L	13096359	3L_13096359_SNP [dm3] 3L_13103259_SNP [dm6]	A	T	4.534e^-4	1	INTERGENIC
2L	11092085	2L_11092085_SNP [dm3] 2L_11092085_SNP [dm6]	A	C	4.537e^-4	1	SYNONYMOUS_CODING CG4705
3L	7591459	3L_7591459_SNP [dm3] 3L_7598359_SNP [dm6]	G	A	4.538e^-4	1	INTRON CG33275
2R	17358236	2R_17358236_SNP [dm3] 2R_21470731_SNP [dm6]	T	C	4.540e^-4	1	INTRON Sdc
2R	16791826	2R_16791826_SNP [dm3] 2R_20904321_SNP [dm6]	G	A	4.548e^-4	1	UPSTREAM otp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9287577	2L_9287577_SNP [dm3] 2L_9287577_SNP [dm6]	C	A	4.553e^-4	1	INTRON Ggamma30A
X	11067993	X_11067993_SNP [dm3] X_11173960_SNP [dm6]	A	C	4.556e^-4	1	INTERGENIC
3L	7000743	3L_7000743_SNP [dm3] 3L_7007643_SNP [dm6]	C	G	4.562e^-4	1	INTRON Mp
X	8503888	X_8503888_SNP [dm3] X_8609855_SNP [dm6]	G	A	4.566e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	7640244	3L_7640244_SNP [dm3] 3L_7647144_SNP [dm6]	C	T	4.571e^-4	1	INTERGENIC
3L	16647550	3L_16647550_SNP [dm3] 3L_16654450_SNP [dm6]	A	T	4.578e^-4	1	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
3R	22833054	3R_22833054_SNP [dm3] 3R_27007332_SNP [dm6]	T	C	4.580e^-4	1	UPSTREAM CG6295 INTRON RYa-R
2R	8820554	2R_8820554_SNP [dm3] 2R_12933049_SNP [dm6]	T	C	4.581e^-4	1	SYNONYMOUS_CODING CG17019	TF binding site mE1_TFBS_chinmo
3L	4107131	3L_4107131_SNP [dm3] 3L_4107131_SNP [dm6]	T	G	4.597e^-4	1	DOWNSTREAM CR45670 & 1 other INTERGENIC
3L	4979987	3L_4979987_SNP [dm3] 3L_4979987_SNP [dm6]	C	T	4.605e^-4	1	UPSTREAM CR45685 DOWNSTREAM CG17030 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10418583	3L_10418583_SNP [dm3] 3L_10425483_SNP [dm6]	A	G	4.616e^-4	1	INTERGENIC
X	20602314	X_20602314_SNP [dm3] X_20731287_SNP [dm6]	A	G	4.621e^-4	1	INTERGENIC
2L	2529955	2L_2529955_SNP [dm3] 2L_2529955_SNP [dm6]	C	G	4.627e^-4	1	INTERGENIC
2R	7885038	2R_7885038_SNP [dm3] 2R_11997533_SNP [dm6]	T	C	4.637e^-4	1	INTERGENIC
3L	8549937	3L_8549937_SNP [dm3] 3L_8556837_SNP [dm6]	C	T	4.640e^-4	1	INTRON rhea	TF binding site BDTNP1_TFBS_dl
X	14709236	X_14709236_SNP [dm3] X_14815203_SNP [dm6]	G	T	4.643e^-4	1	INTRON rut
X	7943718	X_7943718_SNP [dm3] X_8049685_SNP [dm6]	G	T	4.650e^-4	1	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
2L	5618608	2L_5618608_SNP [dm3] 2L_5618608_SNP [dm6]	A	T	4.651e^-4	1	UPSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5618610	2L_5618610_SNP [dm3] 2L_5618610_SNP [dm6]	A	G	4.651e^-4	1	UPSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5618623	2L_5618623_SNP [dm3] 2L_5618623_SNP [dm6]	G	T	4.651e^-4	1	UPSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9979161	2R_9979161_SNP [dm3] 2R_14091656_SNP [dm6]	C	T	4.653e^-4	1	SYNONYMOUS_CODING CG42288 DOWNSTREAM CG42287 INTRON Prosap
2R	15272744	2R_15272744_SNP [dm3] 2R_19385239_SNP [dm6]	G	T	4.665e^-4	1	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
3L	2230414	3L_2230414_SNP [dm3] 3L_2230414_SNP [dm6]	T	C	4.678e^-4	1	NON_SYNONYMOUS_CODING Oseg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9006889	3R_9006889_SNP [dm3] 3R_13181167_SNP [dm6]	C	T	4.684e^-4	1	UPSTREAM CG8138 INTERGENIC
2R	12394685	2R_12394685_SNP [dm3] 2R_16507180_SNP [dm6]	G	A	4.691e^-4	1	INTRON Sema-2a
3L	2898184	3L_2898184_SNP [dm3] 3L_2898184_SNP [dm6]	T	G	4.692e^-4	1	INTRON Shab
3L	10563891	3L_10563891_SNP [dm3] 3L_10570791_SNP [dm6]	T	G	4.695e^-4	1	INTRON A2bp1
X	9906061	X_9906061_SNP [dm3] X_10012028_SNP [dm6]	G	A	4.716e^-4	1	SYNONYMOUS_CODING CG2990	TF binding site mE1_TFBS_sens
3R	22766223	3R_22766223_SNP [dm3] 3R_26940501_SNP [dm6]	G	A	4.722e^-4	1	INTRON sda
3R	6544144	3R_6544144_SNP [dm3] 3R_10718422_SNP [dm6]	G	A	4.731e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	7016867	2L_7016867_SNP [dm3] 2L_7016867_SNP [dm6]	G	A	4.734e^-4	1	SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_chinmo
2L	15148526	2L_15148526_SNP [dm3] 2L_15148526_SNP [dm6]	T	C	4.736e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18647838	2R_18647838_SNP [dm3] 2R_22760333_SNP [dm6]	C	T	4.741e^-4	1	NON_SYNONYMOUS_CODING CG42260 INTRON CG42260	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4035078	3L_4035078_SNP [dm3] 3L_4035078_SNP [dm6]	A	G	4.742e^-4	1	SYNONYMOUS_CODING Gr64e UTR_3_PRIME Gr64d UPSTREAM CR45042 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
3L	6146679	3L_6146679_SNP [dm3] 3L_6153579_SNP [dm6]	G	A	4.744e^-4	1	UPSTREAM Acp65Aa INTERGENIC
3L	12385398	3L_12385398_SNP [dm3] 3L_12392298_SNP [dm6]	A	T	4.757e^-4	1	UPSTREAM Ncc69 INTERGENIC
2R	13105777	2R_13105777_SNP [dm3] 2R_17218272_SNP [dm6]	T	C	4.757e^-4	1	INTRON mbl
2L	9663171	2L_9663171_SNP [dm3] 2L_9663171_SNP [dm6]	A	G	4.761e^-4	1	INTERGENIC
2L	3860245	2L_3860245_SNP [dm3] 2L_3860245_SNP [dm6]	G	A	4.765e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8129673	2L_8129673_SNP [dm3] 2L_8129673_SNP [dm6]	A	T	4.766e^-4	1	INTRON CG8668
3R	7675961	3R_7675961_SNP [dm3] 3R_11850239_SNP [dm6]	G	A	4.772e^-4	1	INTRON CG6959
2L	7743118	2L_7743118_SNP [dm3] 2L_7743118_SNP [dm6]	T	G	4.775e^-4	1	DOWNSTREAM CG7214 INTERGENIC
3R	13466221	3R_13466221_SNP [dm3] 3R_17640499_SNP [dm6]	T	G	4.776e^-4	1	DOWNSTREAM CR45222 INTRON CG43175
3L	7024497	3L_7024497_SNP [dm3] 3L_7031397_SNP [dm6]	G	A	4.778e^-4	1	INTRON Mp
3L	14242994	3L_14242994_SNP [dm3] 3L_14249894_SNP [dm6]	T	C	4.780e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12243455	X_12243455_SNP [dm3] X_12349422_SNP [dm6]	T	G	4.783e^-4	1	INTERGENIC
2R	1356306	2R_1356306_SNP [dm3] 2R_5468801_SNP [dm6]	C	A	4.805e^-4	1	INTRON CG30440
2L	11193570	2L_11193570_SNP [dm3] 2L_11193570_SNP [dm6]	T	C	4.808e^-4	1	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da
2L	20051826	2L_20051826_SNP [dm3] 2L_20051826_SNP [dm6]	T	C	4.811e^-4	1	INTRON sNPF
2L	2549297	2L_2549297_SNP [dm3] 2L_2549297_SNP [dm6]	G	A	4.813e^-4	1	INTERGENIC
3R	14308618	3R_14308618_SNP [dm3] 3R_18482896_SNP [dm6]	G	T	4.820e^-4	1	INTRON fru
3L	22849409	3L_22849409_SNP [dm3] 3L_22856309_SNP [dm6]	A	T	4.826e^-4	1	UPSTREAM CG32459 INTERGENIC
3R	26007139	3R_26007139_SNP [dm3] 3R_30181417_SNP [dm6]	C	A	4.837e^-4	1	UTR_3_PRIME Bet5
3R	6538176	3R_6538176_INS [dm3] 3R_10712454_INS [dm6]	A	AA	4.846e^-4	1	INTERGENIC
3L	13916721	3L_13916721_SNP [dm3] 3L_13923621_SNP [dm6]	T	A	4.846e^-4	1	INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	16773005	2R_16773005_SNP [dm3] 2R_20885500_SNP [dm6]	A	C	4.847e^-4	1	INTRON otp
X	14811164	X_14811164_SNP [dm3] X_14917131_SNP [dm6]	A	T	4.854e^-4	1	SYNONYMOUS_CODING Eo INTRON Flo2
3L	4034139	3L_4034139_SNP [dm3] 3L_4034139_SNP [dm6]	T	A	4.877e^-4	1	DOWNSTREAM Gr64d INTRON Gr64d & 1 other EXON CR45042
3L	7180580	3L_7180580_SNP [dm3] 3L_7187480_SNP [dm6]	C	T	4.877e^-4	1	INTRON Dscam2
2L	9665704	2L_9665704_SNP [dm3] 2L_9665704_SNP [dm6]	G	A	4.882e^-4	1	INTERGENIC
X	9215347	X_9215347_SNP [dm3] X_9321314_SNP [dm6]	G	A	4.889e^-4	1	SYNONYMOUS_CODING c12.2	TF binding site mE1_TFBS_cad
3L	13455903	3L_13455903_SNP [dm3] 3L_13462803_SNP [dm6]	C	A	4.894e^-4	1	INTRON CG10738
X	16435887	X_16435887_SNP [dm3] X_16541854_SNP [dm6]	A	G	4.910e^-4	1	DOWNSTREAM CG9902 INTERGENIC	transposable element FlyBase
2L	2908514	2L_2908514_SNP [dm3] 2L_2908514_SNP [dm6]	C	T	4.910e^-4	1	INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9215154	X_9215154_SNP [dm3] X_9321121_SNP [dm6]	C	G	4.914e^-4	1	NON_SYNONYMOUS_CODING c12.2	TF binding site mE1_TFBS_cad
3L	13837092	3L_13837092_SNP [dm3] 3L_13843992_SNP [dm6]	T	C	4.916e^-4	1	UPSTREAM CG8750 INTRON Tsp68C
2R	10631374	2R_10631374_SNP [dm3] 2R_14743869_SNP [dm6]	G	A	4.924e^-4	1	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18996463	2L_18996463_SNP [dm3] 2L_18996463_SNP [dm6]	T	C	4.932e^-4	1	UPSTREAM CG10650 & 1 other INTERGENIC
X	16997477	X_16997477_SNP [dm3] X_17103444_SNP [dm6]	A	C	4.935e^-4	1	INTRON CG4991
2L	9124590	2L_9124590_SNP [dm3] 2L_9124590_SNP [dm6]	G	T	4.937e^-4	1	DOWNSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16916682	2R_16916682_SNP [dm3] 2R_21029177_SNP [dm6]	T	A	4.945e^-4	1	DOWNSTREAM CR45148 INTERGENIC
X	8375351	X_8375351_SNP [dm3] X_8481318_SNP [dm6]	A	T	4.945e^-4	1	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	9056816	X_9056816_SNP [dm3] X_9162783_SNP [dm6]	G	A	4.947e^-4	1	SYNONYMOUS_CODING CG44532 UPSTREAM Zpr1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_ttk
3L	7024678	3L_7024678_SNP [dm3] 3L_7031578_SNP [dm6]	C	T	4.947e^-4	1	INTRON Mp
3L	5994336	3L_5994336_SNP [dm3] 3L_6001236_SNP [dm6]	C	G	4.956e^-4	1	INTRON PVRAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	3356271	2R_3356271_SNP [dm3] 2R_7468766_SNP [dm6]	T	C	4.963e^-4	1	INTRON Aldh-III
3L	7466315	3L_7466315_SNP [dm3] 3L_7473215_SNP [dm6]	C	T	4.963e^-4	1	DOWNSTREAM CG8541 INTERGENIC
3L	10303095	3L_10303095_SNP [dm3] 3L_10309995_SNP [dm6]	T	A	4.965e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15039979	3L_15039979_SNP [dm3] 3L_15046879_SNP [dm6]	A	G	4.966e^-4	1	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl
3L	15039982	3L_15039982_INS [dm3] 3L_15046882_INS [dm6]	T	TGACAT	4.966e^-4	1	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	7776405	2L_7776405_SNP [dm3] 2L_7776405_SNP [dm6]	C	T	4.976e^-4	1	SYNONYMOUS_CODING CG7179	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1364862	2R_1364862_SNP [dm3] 2R_5477357_SNP [dm6]	G	A	4.988e^-4	1	INTRON CG30440	transposable element FlyBase
X	8375345	X_8375345_SNP [dm3] X_8481312_SNP [dm6]	C	T	4.997e^-4	1	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3L	7616819	3L_7616819_SNP [dm3] 3L_7623719_SNP [dm6]	C	A	5.013e^-4	1	INTRON CG33275	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11091907	2L_11091907_SNP [dm3] 2L_11091907_SNP [dm6]	G	T	5.018e^-4	1	DOWNSTREAM CG16854 INTRON CG4705
3R	6930710	3R_6930710_SNP [dm3] 3R_11104988_SNP [dm6]	C	T	5.027e^-4	1	INTERGENIC
3L	10418791	3L_10418791_SNP [dm3] 3L_10425691_SNP [dm6]	C	A	5.033e^-4	1	INTERGENIC
2R	10691016	2R_10691016_SNP [dm3] 2R_14803511_SNP [dm6]	T	C	5.051e^-4	1	INTRON kn	regulatory region REDfly_CRMs
2L	3356924	2L_3356924_SNP [dm3] 2L_3356924_SNP [dm6]	C	A	5.058e^-4	1	UPSTREAM CG8838 INTERGENIC
3L	14246747	3L_14246747_SNP [dm3] 3L_14253647_SNP [dm6]	G	A	5.072e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	16131743	3R_16131743_SNP [dm3] 3R_20306021_SNP [dm6]	G	A	5.086e^-4	1	DOWNSTREAM CG4362 INTERGENIC	transposable element FlyBase
3R	21987437	3R_21987437_SNP [dm3] 3R_26161715_SNP [dm6]	G	C	5.097e^-4	1	INTERGENIC
3R	8349477	3R_8349477_SNP [dm3] 3R_12523755_SNP [dm6]	C	T	5.110e^-4	1	INTRON Octbeta3R
2R	15245556	2R_15245556_SNP [dm3] 2R_19358051_SNP [dm6]	C	G	5.117e^-4	1	UPSTREAM CG11961 INTRON CG11961	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
X	2619828	X_2619828_SNP [dm3] X_2725795_SNP [dm6]	C	T	5.130e^-4	1	SYNONYMOUS_CODING fs_1_Ya UPSTREAM CG2709	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15042745	3L_15042745_SNP [dm3] 3L_15049645_SNP [dm6]	G	A	5.130e^-4	1	UTR_3_PRIME CG18581 UPSTREAM CG43678 DOWNSTREAM CG12310 INTRON Sytbeta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6002812	3L_6002812_SNP [dm3] 3L_6009712_SNP [dm6]	A	G	5.136e^-4	1	SYNONYMOUS_CODING alphaKap4 INTRON PVRAP
2L	2902851	2L_2902851_SNP [dm3] 2L_2902851_SNP [dm6]	C	T	5.140e^-4	1	INTRON lilli	TF binding site mE1_TFBS_chinmo
2R	15245580	2R_15245580_DEL [dm3] 2R_19358075_DEL [dm6]	TTATG	C	5.141e^-4	1	UPSTREAM CG11961 INTRON CG11961	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	5683503	3L_5683503_SNP [dm3] 3L_5690403_SNP [dm6]	A	G	5.150e^-4	1	INTRON sif
2L	4350209	2L_4350209_SNP [dm3] 2L_4350209_SNP [dm6]	G	C	5.151e^-4	1	UPSTREAM CR44700 DOWNSTREAM CR44699 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	5900874	2R_5900874_SNP [dm3] 2R_10013369_SNP [dm6]	T	G	5.153e^-4	1	INTRON Pka-R2
3L	6984893	3L_6984893_SNP [dm3] 3L_6991793_SNP [dm6]	G	A	5.166e^-4	1	SYNONYMOUS_CODING bin
2R	15272743	2R_15272743_SNP [dm3] 2R_19385238_SNP [dm6]	C	A	5.167e^-4	1	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
2R	10874190	2R_10874190_SNP [dm3] 2R_14986685_SNP [dm6]	C	G	5.168e^-4	1	DOWNSTREAM CG7639 INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
X	14709225	X_14709225_SNP [dm3] X_14815192_SNP [dm6]	T	C	5.177e^-4	1	INTRON rut
2R	18099746	2R_18099746_SNP [dm3] 2R_22212241_SNP [dm6]	T	C	5.178e^-4	1	SYNONYMOUS_CODING CG11291 UPSTREAM ari-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	13493662	2R_13493662_SNP [dm3] 2R_17606157_SNP [dm6]	T	A	5.185e^-4	1	SPLICE_SITE_REGION CG10936 INTRON CG10936
2R	20031638	2R_20031638_SNP [dm3] 2R_24144115_SNP [dm6]	G	A	5.189e^-4	1	INTRON Dat
3L	7452775	3L_7452775_SNP [dm3] 3L_7459675_SNP [dm6]	A	C	5.191e^-4	1	INTERGENIC
X	19224666	X_19224666_SNP [dm3] X_19330633_SNP [dm6]	G	A	5.205e^-4	1	INTRON nAChRalpha7	transposable element FlyBase
3R	24405343	3R_24405343_SNP [dm3] 3R_28579621_SNP [dm6]	C	A	5.208e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	17115329	X_17115329_SNP [dm3] X_17221296_SNP [dm6]	C	T	5.210e^-4	1	UPSTREAM CG5172 INTERGENIC
3L	4034146	3L_4034146_DEL [dm3] 3L_4034146_DEL [dm6]	TA	T	5.213e^-4	1	DOWNSTREAM Gr64d INTRON Gr64d & 1 other EXON CR45042
3L	14517114	3L_14517114_SNP [dm3] 3L_14524014_SNP [dm6]	T	C	5.215e^-4	1	INTRON bbg
2R	18093431	2R_18093431_SNP [dm3] 2R_22205926_SNP [dm6]	A	G	5.222e^-4	1	UPSTREAM CG3292 DOWNSTREAM CG3290 INTERGENIC
X	19414846	X_19414846_SNP [dm3] X_19520813_SNP [dm6]	G	T	5.222e^-4	1	SYNONYMOUS_CODING l_1_G0156	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	24495726	3R_24495726_SNP [dm3] 3R_28670004_SNP [dm6]	C	T	5.237e^-4	1	SYNONYMOUS_CODING CG33346 UPSTREAM CG9989
2L	12464233	2L_12464233_SNP [dm3] 2L_12464233_SNP [dm6]	A	T	5.241e^-4	1	INTRON bun
3L	7474748	3L_7474748_SNP [dm3] 3L_7481648_SNP [dm6]	A	C	5.250e^-4	1	INTERGENIC
2R	10423045	2R_10423045_SNP [dm3] 2R_14535540_SNP [dm6]	C	T	5.257e^-4	1	INTRON ttv
2L	1746019	2L_1746019_SNP [dm3] 2L_1746019_SNP [dm6]	A	G	5.261e^-4	1	NON_SYNONYMOUS_CODING CG17646
X	19656929	X_19656929_SNP [dm3] X_19762896_SNP [dm6]	C	T	5.263e^-4	1	UPSTREAM CG12702 INTRON CG12702	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	8744862	X_8744862_SNP [dm3] X_8850829_SNP [dm6]	A	C	5.266e^-4	1	INTRON CG12075
2L	9663528	2L_9663528_SNP [dm3] 2L_9663528_SNP [dm6]	A	C	5.273e^-4	1	INTERGENIC
2R	20300344	2R_20300344_SNP [dm3] 2R_24412821_SNP [dm6]	C	T	5.279e^-4	1	SYNONYMOUS_CODING CG45068 UTR_5_PRIME CG45069	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13624709	2L_13624709_SNP [dm3] 2L_13624709_SNP [dm6]	A	T	5.284e^-4	1	INTRON kuz
2R	9526623	2R_9526623_INS [dm3] 2R_13639118_INS [dm6]	C	CCCCTGTTTTCC...	5.286e^-4	1	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20919665	2R_20919665_SNP [dm3] 2R_25032142_SNP [dm6]	T	A	5.294e^-4	1	UPSTREAM Nplp1 DOWNSTREAM uzip INTERGENIC
3L	18913506	3L_18913506_DEL [dm3] 3L_18920406_DEL [dm6]	AAAAATAT	A	5.301e^-4	1	UPSTREAM CG18223 DOWNSTREAM CG3819 INTERGENIC
X	14509435	X_14509435_SNP [dm3] X_14615402_SNP [dm6]	T	C	5.303e^-4	1	INTRON NetA
3L	19946826	3L_19946826_SNP [dm3] 3L_19953726_SNP [dm6]	G	T	5.304e^-4	1	UPSTREAM CG33710 & 1 other DOWNSTREAM CG42654 & 1 other INTRON Ac76E
2L	16954347	2L_16954347_SNP [dm3] 2L_16954347_SNP [dm6]	G	T	5.312e^-4	1	INTERGENIC
2R	6844419	2R_6844419_DEL [dm3] 2R_10956914_DEL [dm6]	TT	T	5.312e^-4	1	INTERGENIC
2L	6341425	2L_6341425_SNP [dm3] 2L_6341425_SNP [dm6]	C	T	5.319e^-4	1	UPSTREAM Cpr INTRON Cpr
2L	6341427	2L_6341427_DEL [dm3] 2L_6341427_DEL [dm6]	TTAAAATCTTT...	T	5.319e^-4	1	UPSTREAM Cpr INTRON Cpr
3L	12596092	3L_12596092_SNP [dm3] 3L_12602992_SNP [dm6]	T	C	5.329e^-4	1	INTERGENIC
2L	3974275	2L_3974275_SNP [dm3] 2L_3974275_SNP [dm6]	T	G	5.331e^-4	1	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2873618	2L_2873618_SNP [dm3] 2L_2873618_SNP [dm6]	C	A	5.334e^-4	1	INTRON CG31694	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23793766	3R_23793766_SNP [dm3] 3R_27968044_SNP [dm6]	G	A	5.349e^-4	1	INTRON betaTub97EF
3L	4344565	3L_4344565_DEL [dm3] 3L_4344565_DEL [dm6]	GTATG	G	5.353e^-4	1	INTRON Cip4
2L	2546201	2L_2546201_SNP [dm3] 2L_2546201_SNP [dm6]	T	A	5.355e^-4	1	INTERGENIC
2R	17117834	2R_17117834_SNP [dm3] 2R_21230329_SNP [dm6]	A	G	5.361e^-4	1	INTRON ASPP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	953484	3L_953484_SNP [dm3] 3L_953484_SNP [dm6]	A	G	5.361e^-4	1	INTRON Glut1
3L	20248451	3L_20248451_SNP [dm3] 3L_20255351_SNP [dm6]	G	A	5.387e^-4	1	INTRON rdgC
3R	25730365	3R_25730365_SNP [dm3] 3R_29904643_SNP [dm6]	C	T	5.387e^-4	1	UPSTREAM CG15517 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3L	20865023	3L_20865023_SNP [dm3] 3L_20871923_SNP [dm6]	A	G	5.396e^-4	1	INTRON CG32432
3R	11279896	3R_11279896_SNP [dm3] 3R_15454174_SNP [dm6]	A	T	5.398e^-4	1	INTRON AdamTS-A
3L	13928833	3L_13928833_SNP [dm3] 3L_13935733_SNP [dm6]	C	G	5.398e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	4624839	X_4624839_SNP [dm3] X_4730806_SNP [dm6]	C	T	5.399e^-4	1	INTERGENIC
2L	6794771	2L_6794771_DEL [dm3] 2L_6794771_DEL [dm6]	GGGCG	G	5.403e^-4	1	UPSTREAM nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12440890	2R_12440890_SNP [dm3] 2R_16553385_SNP [dm6]	G	A	5.403e^-4	1	INTRON Syn2	TF binding site BDTNP1_TFBS_twi
3L	14830798	3L_14830798_SNP [dm3] 3L_14837698_SNP [dm6]	A	T	5.409e^-4	1	INTRON CG17839
2L	11494870	2L_11494870_SNP [dm3] 2L_11494870_SNP [dm6]	C	A	5.413e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	996753	3L_996753_SNP [dm3] 3L_996753_SNP [dm6]	T	C	5.430e^-4	1	UTR_3_PRIME trio DOWNSTREAM trio	TF binding site mE1_TFBS_HSA
3L	1853207	3L_1853207_SNP [dm3] 3L_1853207_SNP [dm6]	G	A	5.443e^-4	1	INTRON CG13936
3L	13455886	3L_13455886_SNP [dm3] 3L_13462786_SNP [dm6]	T	G	5.446e^-4	1	INTRON CG10738
3L	13455900	3L_13455900_SNP [dm3] 3L_13462800_SNP [dm6]	T	C	5.446e^-4	1	INTRON CG10738
2L	10515686	2L_10515686_SNP [dm3] 2L_10515686_SNP [dm6]	A	G	5.465e^-4	1	INTRON Fatp & 1 other
3L	4081763	3L_4081763_SNP [dm3] 3L_4081763_SNP [dm6]	T	C	5.466e^-4	1	INTRON Gad1
2L	8441032	2L_8441032_SNP [dm3] 2L_8441032_SNP [dm6]	C	T	5.472e^-4	1	SYNONYMOUS_CODING mus201
3L	21545334	3L_21545334_SNP [dm3] 3L_21552234_SNP [dm6]	A	C	5.478e^-4	1	SYNONYMOUS_CODING Wnk
3R	26002243	3R_26002243_SNP [dm3] 3R_30176521_SNP [dm6]	A	G	5.479e^-4	1	NON_SYNONYMOUS_CODING CG1983
2L	7200972	2L_7200972_SNP [dm3] 2L_7200972_SNP [dm6]	G	A	5.490e^-4	1	INTRON CG4502
2L	4995106	2L_4995106_SNP [dm3] 2L_4995106_SNP [dm6]	G	A	5.494e^-4	1	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4995145	2L_4995145_INS [dm3] 2L_4995145_INS [dm6]	G	GG	5.494e^-4	1	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13385322	3L_13385322_SNP [dm3] 3L_13392222_SNP [dm6]	A	G	5.510e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26520000	3R_26520000_SNP [dm3] 3R_30694278_SNP [dm6]	G	A	5.511e^-4	1	SYNONYMOUS_CODING CG12069
X	3202506	X_3202506_SNP [dm3] X_3308473_SNP [dm6]	T	C	5.523e^-4	1	INTRON dnc
3L	3880549	3L_3880549_DEL [dm3] 3L_3880549_DEL [dm6]	TT	T	5.525e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	19247136	X_19247136_SNP [dm3] X_19353103_SNP [dm6]	A	T	5.539e^-4	1	UPSTREAM kek5 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	1046417	3L_1046417_SNP [dm3] 3L_1046417_SNP [dm6]	C	G	5.545e^-4	1	INTRON bab1
2R	20414260	2R_20414260_SNP [dm3] 2R_24526737_SNP [dm6]	G	C	5.561e^-4	1	NON_SYNONYMOUS_CODING Brca2 UPSTREAM CG4612	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	13063694	2L_13063694_SNP [dm3] 2L_13063694_SNP [dm6]	A	T	5.566e^-4	1	INTERGENIC
3L	995740	3L_995740_SNP [dm3] 3L_995740_SNP [dm6]	A	G	5.569e^-4	1	DOWNSTREAM trio & 1 other INTERGENIC
2R	9086829	2R_9086829_SNP [dm3] 2R_13199324_SNP [dm6]	T	C	5.572e^-4	1	UPSTREAM Kdm4B INTRON Aats-val	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9086832	2R_9086832_SNP [dm3] 2R_13199327_SNP [dm6]	A	C	5.572e^-4	1	UPSTREAM Kdm4B INTRON Aats-val	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	8375349	X_8375349_SNP [dm3] X_8481316_SNP [dm6]	A	T	5.588e^-4	1	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375355	X_8375355_SNP [dm3] X_8481322_SNP [dm6]	C	T	5.588e^-4	1	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375360	X_8375360_DEL [dm3] X_8481327_DEL [dm6]	CAATA	C	5.588e^-4	1	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3L	15942324	3L_15942324_SNP [dm3] 3L_15949224_SNP [dm6]	C	A	5.595e^-4	1	INTRON Pka-C3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2756172	3L_2756172_SNP [dm3] 3L_2756172_SNP [dm6]	G	A	5.622e^-4	1	INTRON Mrtf	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2635271	2L_2635271_DEL [dm3] 2L_2635271_DEL [dm6]	AA	A	5.634e^-4	1	INTERGENIC
3R	18931964	3R_18931964_SNP [dm3] 3R_23106242_SNP [dm6]	C	T	5.637e^-4	1	INTRON CG13830
X	19656942	X_19656942_SNP [dm3] X_19762909_SNP [dm6]	A	C	5.639e^-4	1	UPSTREAM CG12702 INTRON CG12702	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	3332345	2R_3332345_SNP [dm3] 2R_7444840_SNP [dm6]	C	A	5.645e^-4	1	UTR_5_PRIME CG30503 UTR_3_PRIME kappaB-Ras UPSTREAM CG30503
2R	9686449	2R_9686449_SNP [dm3] 2R_13798944_SNP [dm6]	G	A	5.649e^-4	1	INTRON Cpr50Cb
3L	9794631	3L_9794631_SNP [dm3] 3L_9801531_SNP [dm6]	A	G	5.655e^-4	1	UTR_3_PRIME Ilp3 INTRON CG32052	TF binding site mE1_TFBS_cad
3L	7639923	3L_7639923_DEL [dm3] 3L_7646823_DEL [dm6]	AA	A	5.656e^-4	1	INTERGENIC
2R	13385678	2R_13385678_SNP [dm3] 2R_17498173_SNP [dm6]	G	A	5.657e^-4	1	INTERGENIC
2R	6748052	2R_6748052_SNP [dm3] 2R_10860547_SNP [dm6]	G	C	5.663e^-4	1	DOWNSTREAM CR44302 INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5916409	3L_5916409_SNP [dm3] 3L_5923309_SNP [dm6]	G	A	5.671e^-4	1	UPSTREAM Vap-33B INTRON CG32407	TF binding site mE1_TFBS_cad
2L	5435683	2L_5435683_SNP [dm3] 2L_5435683_SNP [dm6]	C	T	5.675e^-4	1	EXON CR31647
2L	5435684	2L_5435684_SNP [dm3] 2L_5435684_SNP [dm6]	T	C	5.675e^-4	1	EXON CR31647
3L	9808607	3L_9808607_SNP [dm3] 3L_9815507_SNP [dm6]	T	C	5.684e^-4	1	UPSTREAM CG43897 INTRON CG43897
3R	14308524	3R_14308524_SNP [dm3] 3R_18482802_SNP [dm6]	G	T	5.692e^-4	1	INTRON fru
2L	15856819	2L_15856819_SNP [dm3] 2L_15856819_SNP [dm6]	T	C	5.697e^-4	1	DOWNSTREAM Tektin-A INTERGENIC
3R	14992632	3R_14992632_SNP [dm3] 3R_19166910_SNP [dm6]	G	A	5.698e^-4	1	INTRON sqz	TF binding site BDTNP1_TFBS_dl
2L	16023450	2L_16023450_SNP [dm3] 2L_16023450_SNP [dm6]	G	A	5.699e^-4	1	INTRON beat-Ic
3L	9591316	3L_9591316_SNP [dm3] 3L_9598216_SNP [dm6]	T	C	5.702e^-4	1	UPSTREAM CG3222 DOWNSTREAM CG14177 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10686192	2R_10686192_DEL [dm3] 2R_14798687_DEL [dm6]	TT	T	5.704e^-4	1	UTR_5_PRIME kn INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	9051995	2L_9051995_SNP [dm3] 2L_9051995_SNP [dm6]	T	A	5.708e^-4	1	UTR_3_PRIME CG31708
3R	21105007	3R_21105007_SNP [dm3] 3R_25279285_SNP [dm6]	C	T	5.708e^-4	1	NON_SYNONYMOUS_CODING CG10514	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14246743	3L_14246743_SNP [dm3] 3L_14253643_SNP [dm6]	T	C	5.711e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	17288152	3R_17288152_SNP [dm3] 3R_21462430_SNP [dm6]	C	T	5.716e^-4	1	INTERGENIC
3L	13005664	3L_13005664_SNP [dm3] 3L_13012564_SNP [dm6]	T	C	5.720e^-4	1	SYNONYMOUS_CODING MICAL-like UPSTREAM CG11261
2L	8291010	2L_8291010_SNP [dm3] 2L_8291010_SNP [dm6]	G	T	5.722e^-4	1	DOWNSTREAM tRNA:K5:29A INTRON Btk29A	TF binding site BDTNP1_TFBS_twi
3L	3712343	3L_3712343_SNP [dm3] 3L_3712343_SNP [dm6]	T	A	5.726e^-4	1	INTERGENIC
3R	6537388	3R_6537388_SNP [dm3] 3R_10711666_SNP [dm6]	G	A	5.735e^-4	1	UPSTREAM CG14689 INTERGENIC
2R	9337391	2R_9337391_SNP [dm3] 2R_13449886_SNP [dm6]	A	T	5.739e^-4	1	UPSTREAM cnn & 1 other INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	9686632	2R_9686632_SNP [dm3] 2R_13799127_SNP [dm6]	C	T	5.740e^-4	1	INTRON Cpr50Cb
2L	9407954	2L_9407954_DEL [dm3] 2L_9407954_DEL [dm6]	TAGCTTAAAATTATTTAAAA...	G	5.758e^-4	1	INTRON Shawl
X	20602304	X_20602304_SNP [dm3] X_20731277_SNP [dm6]	T	G	5.760e^-4	1	INTERGENIC
X	17674691	X_17674691_SNP [dm3] X_17780658_SNP [dm6]	A	G	5.770e^-4	1	INTERGENIC
2R	10690994	2R_10690994_SNP [dm3] 2R_14803489_SNP [dm6]	G	A	5.778e^-4	1	INTRON kn	regulatory region REDfly_CRMs
2R	10691005	2R_10691005_SNP [dm3] 2R_14803500_SNP [dm6]	C	T	5.778e^-4	1	INTRON kn	regulatory region REDfly_CRMs
2R	10691008	2R_10691008_SNP [dm3] 2R_14803503_SNP [dm6]	A	G	5.778e^-4	1	INTRON kn	regulatory region REDfly_CRMs
3L	13228897	3L_13228897_SNP [dm3] 3L_13235797_SNP [dm6]	C	A	5.788e^-4	1	INTRON caps
3L	14427866	3L_14427866_SNP [dm3] 3L_14434766_SNP [dm6]	A	G	5.793e^-4	1	INTRON bbg
3L	13096384	3L_13096384_SNP [dm3] 3L_13103284_SNP [dm6]	G	A	5.798e^-4	1	INTERGENIC
2L	10693972	2L_10693972_SNP [dm3] 2L_10693972_SNP [dm6]	T	C	5.799e^-4	1	NON_SYNONYMOUS_CODING CG17108	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	17738976	2R_17738976_SNP [dm3] 2R_21851471_SNP [dm6]	C	T	5.805e^-4	1	INTERGENIC
2L	12437000	2L_12437000_INS [dm3] 2L_12437000_INS [dm6]	A	AATGAACGAA	5.807e^-4	1	INTRON Elf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	12437002	2L_12437002_MNP [dm3] 2L_12437002_MNP [dm6]	ACC	GGT	5.807e^-4	1	INTRON Elf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	7957009	X_7957009_SNP [dm3] X_8062976_SNP [dm6]	C	T	5.814e^-4	1	INTRON mys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10578915	3R_10578915_SNP [dm3] 3R_14753193_SNP [dm6]	C	T	5.818e^-4	1	SYNONYMOUS_CODING CG7362 INTRON jvl	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10866938	3L_10866938_SNP [dm3] 3L_10873838_SNP [dm6]	A	T	5.819e^-4	1	INTRON tna	TF binding site mE1_TFBS_cad
3L	757352	3L_757352_SNP [dm3] 3L_757352_SNP [dm6]	G	T	5.822e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11798881	3L_11798881_DEL [dm3] 3L_11805781_DEL [dm6]	AG	A	5.824e^-4	1	INTRON CG42255
3L	7282073	3L_7282073_SNP [dm3] 3L_7288973_SNP [dm6]	T	A	5.832e^-4	1	INTRON unc-13-4A
X	4795684	X_4795684_SNP [dm3] X_4901651_SNP [dm6]	C	T	5.845e^-4	1	INTRON CG42594
X	6818665	X_6818665_INS [dm3] X_6924632_INS [dm6]	T	TGAT	5.856e^-4	1	INTRON CG14431
3R	13534435	3R_13534435_SNP [dm3] 3R_17708713_SNP [dm6]	G	A	5.857e^-4	1	INTRON osa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	20300409	2R_20300409_SNP [dm3] 2R_24412886_SNP [dm6]	G	T	5.868e^-4	1	NON_SYNONYMOUS_CODING CG45068 UTR_5_PRIME CG45069	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6560355	3R_6560355_SNP [dm3] 3R_10734633_SNP [dm6]	C	A	5.869e^-4	1	DOWNSTREAM tomboy20 INTERGENIC
3L	14741923	3L_14741923_SNP [dm3] 3L_14748823_SNP [dm6]	T	C	5.872e^-4	1	SYNONYMOUS_CODING CG42507 UTR_3_PRIME Trl DOWNSTREAM ome	TF binding site mE1_TFBS_chinmo
2R	11042471	2R_11042471_SNP [dm3] 2R_15154966_SNP [dm6]	A	G	5.874e^-4	1	UPSTREAM igl INTERGENIC
3L	9523278	3L_9523278_SNP [dm3] 3L_9530178_SNP [dm6]	G	A	5.880e^-4	1	SYNONYMOUS_CODING Or67a
3L	19948660	3L_19948660_SNP [dm3] 3L_19955560_SNP [dm6]	T	G	5.885e^-4	1	INTRON Ac76E & 1 other
3R	2644726	3R_2644726_SNP [dm3] 3R_6819004_SNP [dm6]	G	T	5.892e^-4	1	UPSTREAM tRNA:K5:84ABd DOWNSTREAM tRNA:CR31485:Psi INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11780913	3L_11780913_SNP [dm3] 3L_11787813_SNP [dm6]	C	T	5.895e^-4	1	NON_SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21973014	3R_21973014_SNP [dm3] 3R_26147292_SNP [dm6]	T	A	5.918e^-4	1	INTERGENIC
X	14686212	X_14686212_SNP [dm3] X_14792179_SNP [dm6]	A	G	5.927e^-4	1	SYNONYMOUS_CODING rut INTRON rut	TF binding site mE1_TFBS_chinmo
X	16848875	X_16848875_SNP [dm3] X_16954842_SNP [dm6]	G	A	5.930e^-4	1	SYNONYMOUS_CODING RhoGAP15B
2R	14172082	2R_14172082_SNP [dm3] 2R_18284577_SNP [dm6]	A	C	5.941e^-4	1	DOWNSTREAM sbb INTRON sbb	TF binding site mE1_TFBS_cad
2R	14172087	2R_14172087_SNP [dm3] 2R_18284582_SNP [dm6]	G	A	5.941e^-4	1	DOWNSTREAM sbb INTRON sbb	TF binding site mE1_TFBS_cad
2R	14172091	2R_14172091_INS [dm3] 2R_18284586_INS [dm6]	TC	ATGCT	5.941e^-4	1	DOWNSTREAM sbb INTRON sbb	TF binding site mE1_TFBS_cad
2R	16311397	2R_16311397_SNP [dm3] 2R_20423892_SNP [dm6]	G	T	5.947e^-4	1	UPSTREAM CG12484 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	5029392	X_5029392_SNP [dm3] X_5135359_SNP [dm6]	C	A	5.965e^-4	1	INTRON rg & 1 other
3R	14348110	3R_14348110_SNP [dm3] 3R_18522388_SNP [dm6]	A	T	5.973e^-4	1	INTRON fru	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15875737	2L_15875737_SNP [dm3] 2L_15875737_SNP [dm6]	G	C	5.976e^-4	1	INTERGENIC
3L	10130295	3L_10130295_SNP [dm3] 3L_10137195_SNP [dm6]	C	G	5.981e^-4	1	INTRON dpr6
X	20602346	X_20602346_SNP [dm3] X_20731319_SNP [dm6]	C	A	5.984e^-4	1	INTERGENIC
3L	18696660	3L_18696660_DEL [dm3] 3L_18703560_DEL [dm6]	AA	A	6.000e^-4	1	INTERGENIC
2R	20031640	2R_20031640_SNP [dm3] 2R_24144117_SNP [dm6]	C	G	6.003e^-4	1	INTRON Dat
3L	8719955	3L_8719955_DEL [dm3] 3L_8726855_DEL [dm6]	CC	C	6.016e^-4	1	DOWNSTREAM CG6511 INTRON Cp18	TF binding site mE1_TFBS_cad
X	6576525	X_6576525_SNP [dm3] X_6682492_SNP [dm6]	G	T	6.017e^-4	1	DOWNSTREAM l_1_G0255 INTRON CG4095	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9723986	2R_9723986_SNP [dm3] 2R_13836481_SNP [dm6]	A	G	6.018e^-4	1	UTR_5_PRIME CG6347
2L	13711120	2L_13711120_SNP [dm3] 2L_13711120_SNP [dm6]	C	T	6.034e^-4	1	DOWNSTREAM CG7311 INTRON CG31814
3L	3939446	3L_3939446_SNP [dm3] 3L_3939446_SNP [dm6]	C	T	6.035e^-4	1	INTRON CG12766	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2552780	2L_2552780_DEL [dm3] 2L_2552780_DEL [dm6]	AA	A	6.038e^-4	1	UTR_5_PRIME CG3515
2R	17130023	2R_17130023_SNP [dm3] 2R_21242518_SNP [dm6]	A	C	6.040e^-4	1	INTRON ASPP
2L	9408771	2L_9408771_SNP [dm3] 2L_9408771_SNP [dm6]	T	G	6.067e^-4	1	INTRON Shawl
3R	2637198	3R_2637198_SNP [dm3] 3R_6811476_SNP [dm6]	G	A	6.071e^-4	1	INTRON CR42651	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2R	20214999	2R_20214999_SNP [dm3] 2R_24327476_SNP [dm6]	A	C	6.072e^-4	1	INTRON CR44810
2R	18090290	2R_18090290_SNP [dm3] 2R_22202785_SNP [dm6]	A	G	6.109e^-4	1	UPSTREAM Swim DOWNSTREAM CG3292 EXON CR45376
3L	23852385	3L_23852385_SNP [dm3] 3L_23859285_SNP [dm6]	G	A	6.110e^-4	1	INTRON CG40470
2R	10366370	2R_10366370_SNP [dm3] 2R_14478865_SNP [dm6]	T	C	6.113e^-4	1	DOWNSTREAM CR44462 INTERGENIC	TF binding site mE1_TFBS_cad
3L	14773749	3L_14773749_INS [dm3] 3L_14780649_INS [dm6]	A	ACATA	6.118e^-4	1	INTRON bmm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3L	1706947	3L_1706947_SNP [dm3] 3L_1706947_SNP [dm6]	T	C	6.122e^-4	1	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9983320	X_9983320_SNP [dm3] X_10089287_SNP [dm6]	T	G	6.123e^-4	1	INTRON RhoU	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2580035	3L_2580035_INS [dm3] 3L_2580035_INS [dm6]	G	GAG	6.125e^-4	1	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10181008	3R_10181008_SNP [dm3] 3R_14355286_SNP [dm6]	G	T	6.126e^-4	1	INTRON NK7.1
X	14541200	X_14541200_SNP [dm3] X_14647167_SNP [dm6]	G	A	6.128e^-4	1	INTRON NetA	TF binding site BDTNP1_TFBS_twi
2R	19839664	2R_19839664_SNP [dm3] 2R_23952141_SNP [dm6]	T	G	6.134e^-4	1	DOWNSTREAM CG3803 & 1 other INTRON CG2970
2L	11092246	2L_11092246_SNP [dm3] 2L_11092246_SNP [dm6]	C	T	6.140e^-4	1	SYNONYMOUS_CODING CG4705
2L	5158907	2L_5158907_SNP [dm3] 2L_5158907_SNP [dm6]	G	T	6.142e^-4	1	NON_SYNONYMOUS_CODING Msp300 DOWNSTREAM Msp300 INTRON Msp300
3L	6661421	3L_6661421_SNP [dm3] 3L_6668321_SNP [dm6]	G	T	6.144e^-4	1	UPSTREAM CG32395 INTERGENIC	TF binding site mE1_TFBS_HSA
X	2385544	X_2385544_SNP [dm3] X_2491511_SNP [dm6]	C	T	6.153e^-4	1	SYNONYMOUS_CODING trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4075869	3L_4075869_SNP [dm3] 3L_4075869_SNP [dm6]	G	A	6.161e^-4	1	SYNONYMOUS_CODING Gad1
3L	13455940	3L_13455940_SNP [dm3] 3L_13462840_SNP [dm6]	C	T	6.161e^-4	1	INTRON CG10738
2L	12057178	2L_12057178_INS [dm3] 2L_12057178_INS [dm6]	T	TC	6.167e^-4	1	UPSTREAM CG34164 INTRON RpL7-like & 1 other	TF binding site mE1_TFBS_sens
2R	7885748	2R_7885748_SNP [dm3] 2R_11998243_SNP [dm6]	T	C	6.172e^-4	1	INTERGENIC
3R	22842669	3R_22842669_SNP [dm3] 3R_27016947_SNP [dm6]	C	T	6.180e^-4	1	DOWNSTREAM CG17192 INTRON RYa-R
X	6006392	X_6006392_SNP [dm3] X_6112359_SNP [dm6]	T	C	6.183e^-4	1	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3698711	3L_3698711_DEL [dm3] 3L_3698711_DEL [dm6]	TT	T	6.184e^-4	1	INTERGENIC
2R	16915903	2R_16915903_SNP [dm3] 2R_21028398_SNP [dm6]	C	T	6.189e^-4	1	DOWNSTREAM CR45148 INTERGENIC
2L	21927523	2L_21927523_SNP [dm3] 2L_21927523_SNP [dm6]	T	C	6.200e^-4	1	INTERGENIC	transposable element FlyBase
3L	13097398	3L_13097398_SNP [dm3] 3L_13104298_SNP [dm6]	A	G	6.214e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1745957	2L_1745957_SNP [dm3] 2L_1745957_SNP [dm6]	T	C	6.220e^-4	1	SYNONYMOUS_CODING CG17646
3R	25529804	3R_25529804_SNP [dm3] 3R_29704082_SNP [dm6]	C	A	6.223e^-4	1	INTERGENIC
3L	758799	3L_758799_SNP [dm3] 3L_758799_SNP [dm6]	A	C	6.228e^-4	1	INTERGENIC
3L	797694	3L_797694_SNP [dm3] 3L_797694_SNP [dm6]	G	A	6.230e^-4	1	INTERGENIC
3L	6093919	3L_6093919_SNP [dm3] 3L_6100819_SNP [dm6]	T	C	6.232e^-4	1	INTRON Ets65A
3L	14246787	3L_14246787_SNP [dm3] 3L_14253687_SNP [dm6]	A	C	6.257e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	7799414	3L_7799414_DEL [dm3] 3L_7806314_DEL [dm6]	GATT	G	6.258e^-4	1	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2893148	3L_2893148_DEL [dm3] 3L_2893148_DEL [dm6]	AGATTTTCAG	A	6.259e^-4	1	UPSTREAM spz5 INTERGENIC
3L	13365769	3L_13365769_SNP [dm3] 3L_13372669_SNP [dm6]	T	C	6.259e^-4	1	INTERGENIC
2L	9052001	2L_9052001_SNP [dm3] 2L_9052001_SNP [dm6]	A	C	6.267e^-4	1	UTR_3_PRIME CG31708
3L	1275609	3L_1275609_SNP [dm3] 3L_1275609_SNP [dm6]	A	G	6.270e^-4	1	UPSTREAM CG32333 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	1275612	3L_1275612_DEL [dm3] 3L_1275612_DEL [dm6]	CC	T	6.270e^-4	1	UPSTREAM CG32333 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	16773448	2L_16773448_SNP [dm3] 2L_16773448_SNP [dm6]	C	G	6.272e^-4	1	INTRON Mhc	TF binding site BDTNP1_TFBS_twi
3L	1686358	3L_1686358_SNP [dm3] 3L_1686358_SNP [dm6]	T	A	6.280e^-4	1	INTRON CG7991
2L	9662918	2L_9662918_SNP [dm3] 2L_9662918_SNP [dm6]	C	G	6.284e^-4	1	INTERGENIC
2R	20724986	2R_20724986_SNP [dm3] 2R_24837463_SNP [dm6]	C	A	6.302e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13168245	3L_13168245_SNP [dm3] 3L_13175145_SNP [dm6]	G	A	6.309e^-4	1	NON_SYNONYMOUS_CODING snky	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15272771	2R_15272771_SNP [dm3] 2R_19385266_SNP [dm6]	A	T	6.315e^-4	1	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
2R	15272753	2R_15272753_SNP [dm3] 2R_19385248_SNP [dm6]	T	A	6.316e^-4	1	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
2R	18337326	2R_18337326_SNP [dm3] 2R_22449821_SNP [dm6]	A	T	6.316e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16930671	2R_16930671_SNP [dm3] 2R_21043166_SNP [dm6]	A	G	6.319e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3693721	3L_3693721_SNP [dm3] 3L_3693721_SNP [dm6]	T	G	6.321e^-4	1	DOWNSTREAM CR43485 INTERGENIC
3R	20713150	3R_20713150_SNP [dm3] 3R_24887428_SNP [dm6]	A	G	6.325e^-4	1	INTRON CG31121
3L	20044936	3L_20044936_SNP [dm3] 3L_20051836_SNP [dm6]	G	T	6.349e^-4	1	INTERGENIC
2R	8414784	2R_8414784_SNP [dm3] 2R_12527279_SNP [dm6]	A	G	6.350e^-4	1	INTERGENIC
2R	8820131	2R_8820131_SNP [dm3] 2R_12932626_SNP [dm6]	A	G	6.369e^-4	1	SYNONYMOUS_CODING CG17019	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6921453	3R_6921453_SNP [dm3] 3R_11095731_SNP [dm6]	G	A	6.374e^-4	1	INTERGENIC
3L	2016127	3L_2016127_DEL [dm3] 3L_2016127_DEL [dm6]	GTTCTACTCATAATTCAGGA...	G	6.384e^-4	1	INTERGENIC
3L	13377120	3L_13377120_DEL [dm3] 3L_13384020_DEL [dm6]	TT	T	6.388e^-4	1	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3R	9006618	3R_9006618_SNP [dm3] 3R_13180896_SNP [dm6]	A	T	6.389e^-4	1	UPSTREAM CG8138 INTERGENIC
2R	3569803	2R_3569803_SNP [dm3] 2R_7682298_SNP [dm6]	T	G	6.395e^-4	1	UPSTREAM CG1399 INTRON CG1399
X	19503318	X_19503318_SNP [dm3] X_19609285_SNP [dm6]	T	C	6.400e^-4	1	UPSTREAM CG14207 INTRON CG14207	TF binding site BDTNP1_TFBS_twi
X	16149008	X_16149008_SNP [dm3] X_16254975_SNP [dm6]	A	C	6.402e^-4	1	UPSTREAM snRNA:U5:14B DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20031643	2R_20031643_SNP [dm3] 2R_24144120_SNP [dm6]	T	G	6.403e^-4	1	INTRON Dat

By genomic position
Variant impact
Gene name

Climbing_Control phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results