DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.534e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.01583

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	8.5755	0.0137

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1867 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	17014404	X_17014404_SNP [dm3] X_17120371_SNP [dm6]	A	G	6.512e^-7	0.83	INTRON CG5004
2R	16532876	2R_16532876_SNP [dm3] 2R_20645371_SNP [dm6]	G	A	8.859e^-7	0.83	SPLICE_SITE_REGION DMAP1 UPSTREAM Lrt INTRON DMAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	10873423	X_10873423_SNP [dm3] X_10979390_SNP [dm6]	T	C	1.819e^-6	0.96	INTRON CG42339
2L	5811554	2L_5811554_DEL [dm3] 2L_5811554_DEL [dm6]	AA	A	3.144e^-6	0.96	UPSTREAM CG43307 DOWNSTREAM CR44576 INTERGENIC
3L	521489	3L_521489_INS [dm3] 3L_521489_INS [dm6]	T	TT	3.833e^-6	0.96	INTRON klar
2R	15385771	2R_15385771_SNP [dm3] 2R_19498266_SNP [dm6]	A	C	5.215e^-6	0.96	SYNONYMOUS_CODING CG15120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10548553	2L_10548553_SNP [dm3] 2L_10548553_SNP [dm6]	G	A	5.873e^-6	0.96	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18841081	X_18841081_SNP [dm3] X_18947048_SNP [dm6]	C	T	6.129e^-6	0.96	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12011510	3R_12011510_SNP [dm3] 3R_16185788_SNP [dm6]	T	C	6.983e^-6	0.96	SYNONYMOUS_CODING CG8927 DOWNSTREAM Bin1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	18841099	X_18841099_SNP [dm3] X_18947066_SNP [dm6]	A	G	7.108e^-6	0.96	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11242370	3R_11242370_SNP [dm3] 3R_15416648_SNP [dm6]	C	T	7.560e^-6	0.96	UTR_3_PRIME Atx2 DOWNSTREAM Atx2 & 2 others
2R	9934186	2R_9934186_SNP [dm3] 2R_14046681_SNP [dm6]	A	G	7.894e^-6	0.96	INTRON mam
X	10873406	X_10873406_SNP [dm3] X_10979373_SNP [dm6]	C	T	8.035e^-6	0.96	INTRON CG42339
3L	19218515	3L_19218515_SNP [dm3] 3L_19225415_SNP [dm6]	T	C	8.845e^-6	0.96	INTRON fz2
2L	12253694	2L_12253694_SNP [dm3] 2L_12253694_SNP [dm6]	C	T	9.808e^-6	0.96	INTRON aret
X	10873320	X_10873320_SNP [dm3] X_10979287_SNP [dm6]	G	C	1.053e^-5	0.96	INTRON CG42339
3R	15919371	3R_15919371_SNP [dm3] 3R_20093649_SNP [dm6]	G	C	1.090e^-5	0.96	INTERGENIC
3L	559571	3L_559571_SNP [dm3] 3L_559571_SNP [dm6]	G	A	1.163e^-5	0.96	INTRON hipk
X	5954122	X_5954122_SNP [dm3] X_6060089_SNP [dm6]	C	A	1.184e^-5	0.96	SYNONYMOUS_CODING CG5921	TF binding site mE1_TFBS_chinmo
2L	8661955	2L_8661955_SNP [dm3] 2L_8661955_SNP [dm6]	A	G	1.501e^-5	0.96	INTRON Sema-1a
2R	6083531	2R_6083531_SNP [dm3] 2R_10196026_SNP [dm6]	G	T	1.539e^-5	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	13895798	3R_13895798_SNP [dm3] 3R_18070076_SNP [dm6]	G	C	1.596e^-5	0.96	INTERGENIC
X	10873449	X_10873449_SNP [dm3] X_10979416_SNP [dm6]	T	A	1.621e^-5	0.96	INTRON CG42339
3L	9359250	3L_9359250_SNP [dm3] 3L_9366150_SNP [dm6]	G	A	1.696e^-5	0.96	SYNONYMOUS_CODING Klp67A DOWNSTREAM CG4447	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15895689	2L_15895689_SNP [dm3] 2L_15895689_SNP [dm6]	G	T	1.780e^-5	0.96	UTR_5_PRIME CG31735
X	17007525	X_17007525_MNP [dm3] X_17113492_MNP [dm6]	ACTT	GGCG	1.842e^-5	0.96	INTRON CG5004
X	17007530	X_17007530_INS [dm3] X_17113497_INS [dm6]	T	GC	1.842e^-5	0.96	INTRON CG5004
3L	13332818	3L_13332818_SNP [dm3] 3L_13339718_SNP [dm6]	A	G	1.846e^-5	0.96	INTERGENIC
3L	19669710	3L_19669710_SNP [dm3] 3L_19676610_SNP [dm6]	G	T	1.853e^-5	0.96	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8101988	2L_8101988_SNP [dm3] 2L_8101988_SNP [dm6]	T	G	1.957e^-5	0.96	INTRON Bsg	TF binding site mE1_TFBS_sbb
3R	7098298	3R_7098298_DEL [dm3] 3R_11272576_DEL [dm6]	TCCTTGGTTTGGGT...	T	2.028e^-5	0.96	INTRON CR31386
2L	5811596	2L_5811596_SNP [dm3] 2L_5811596_SNP [dm6]	C	T	2.029e^-5	0.96	NON_SYNONYMOUS_CODING CG43307 DOWNSTREAM CR44576
X	17007533	X_17007533_MNP [dm3] X_17113500_MNP [dm6]	GCAT	TAGG	2.083e^-5	0.96	INTRON CG5004
X	17007538	X_17007538_SNP [dm3] X_17113505_SNP [dm6]	T	A	2.083e^-5	0.96	INTRON CG5004
2L	12110705	2L_12110705_MNP [dm3] 2L_12110705_MNP [dm6]	ACC	GTT	2.129e^-5	0.96	UPSTREAM Phae2 DOWNSTREAM Phae1 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	13333912	3L_13333912_SNP [dm3] 3L_13340812_SNP [dm6]	G	T	2.148e^-5	0.96	INTERGENIC
X	17007544	X_17007544_INS [dm3] X_17113511_INS [dm6]	T	TT	2.316e^-5	0.96	INTRON CG5004
2R	10527544	2R_10527544_SNP [dm3] 2R_14640039_SNP [dm6]	G	A	2.339e^-5	0.96	DOWNSTREAM CG12862 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	10548570	2L_10548570_SNP [dm3] 2L_10548570_SNP [dm6]	A	G	2.374e^-5	0.96	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12849679	2L_12849679_INS [dm3] 2L_12849679_INS [dm6]	T	TGCCATT	2.445e^-5	0.96	INTERGENIC
X	4006391	X_4006391_SNP [dm3] X_4112358_SNP [dm6]	T	A	2.544e^-5	0.96	SYNONYMOUS_CODING Nsun2	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	14830590	3L_14830590_SNP [dm3] 3L_14837490_SNP [dm6]	G	A	2.617e^-5	0.96	INTRON CG17839
2R	16158624	2R_16158624_SNP [dm3] 2R_20271119_SNP [dm6]	T	G	2.622e^-5	0.96	DOWNSTREAM CG10444 & 1 other INTERGENIC
3L	7631469	3L_7631469_SNP [dm3] 3L_7638369_SNP [dm6]	A	T	2.703e^-5	0.96	NON_SYNONYMOUS_CODING CG33275
2R	17982565	2R_17982565_SNP [dm3] 2R_22095060_SNP [dm6]	A	C	2.811e^-5	0.96	INTRON CG11073
2L	561970	2L_561970_SNP [dm3] 2L_561970_SNP [dm6]	T	C	2.820e^-5	0.96	SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
2L	2339075	2L_2339075_SNP [dm3] 2L_2339075_SNP [dm6]	T	C	2.823e^-5	0.96	SYNONYMOUS_CODING eys INTRON CG9967
2L	14315440	2L_14315440_SNP [dm3] 2L_14315440_SNP [dm6]	A	T	2.915e^-5	0.96	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	3543206	3L_3543206_SNP [dm3] 3L_3543206_SNP [dm6]	T	A	3.020e^-5	0.96	UPSTREAM Eip63E INTRON Eip63E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	14066824	2L_14066824_SNP [dm3] 2L_14066824_SNP [dm6]	T	A	3.135e^-5	0.96	INTRON nAChRalpha5
2R	20137954	2R_20137954_SNP [dm3] 2R_24250431_SNP [dm6]	C	T	3.223e^-5	0.96	SYNONYMOUS_CODING Ir60a UPSTREAM snoRNA:Me18S-A1597 INTRON nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10883003	3L_10883003_SNP [dm3] 3L_10889903_SNP [dm6]	T	C	3.230e^-5	0.96	UPSTREAM Cpr67Fa1 INTERGENIC
2L	10548577	2L_10548577_SNP [dm3] 2L_10548577_SNP [dm6]	C	T	3.415e^-5	0.96	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3542717	3L_3542717_SNP [dm3] 3L_3542717_SNP [dm6]	C	T	3.496e^-5	0.96	UPSTREAM Eip63E INTRON Eip63E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	12369802	3L_12369802_SNP [dm3] 3L_12376702_SNP [dm6]	C	A	3.580e^-5	0.96	INTRON Ncc69
2R	15385928	2R_15385928_SNP [dm3] 2R_19498423_SNP [dm6]	T	G	3.670e^-5	0.96	INTRON CG15120	TF binding site mE1_TFBS_cad
X	14858957	X_14858957_SNP [dm3] X_14964924_SNP [dm6]	G	A	3.709e^-5	0.96	INTRON eag
3L	9546282	3L_9546282_SNP [dm3] 3L_9553182_SNP [dm6]	A	T	3.794e^-5	0.96	UTR_5_PRIME CG42673
X	14860759	X_14860759_SNP [dm3] X_14966726_SNP [dm6]	C	A	3.953e^-5	0.96	INTRON eag
X	17014621	X_17014621_SNP [dm3] X_17120588_SNP [dm6]	G	A	3.956e^-5	0.96	INTRON CG5004
2L	7078028	2L_7078028_SNP [dm3] 2L_7078028_SNP [dm6]	T	C	4.134e^-5	0.96	DOWNSTREAM CR44611 INTRON Pvf2
3L	12897737	3L_12897737_SNP [dm3] 3L_12904637_SNP [dm6]	T	C	4.149e^-5	0.96	UPSTREAM CG32117 INTERGENIC
2L	10548524	2L_10548524_INS [dm3] 2L_10548524_INS [dm6]	A	AG	4.180e^-5	0.96	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9359040	3L_9359040_SNP [dm3] 3L_9365940_SNP [dm6]	A	G	4.198e^-5	0.96	SYNONYMOUS_CODING Klp67A DOWNSTREAM CG4447	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14860763	X_14860763_SNP [dm3] X_14966730_SNP [dm6]	A	C	4.287e^-5	0.96	INTRON eag
X	5820058	X_5820058_SNP [dm3] X_5926025_SNP [dm6]	C	A	4.298e^-5	0.96	INTRON CG3726
3R	17527798	3R_17527798_SNP [dm3] 3R_21702076_SNP [dm6]	T	C	4.317e^-5	0.96	INTRON CG31176
X	10396239	X_10396239_SNP [dm3] X_10502206_SNP [dm6]	G	A	4.335e^-5	0.96	INTRON spri	TF binding site mE1_TFBS_inv
3R	13895629	3R_13895629_SNP [dm3] 3R_18069907_SNP [dm6]	C	T	4.377e^-5	0.96	INTERGENIC
2L	67830	2L_67830_SNP [dm3] 2L_67830_SNP [dm6]	T	G	4.389e^-5	0.96	INTRON dbr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	3543152	3L_3543152_SNP [dm3] 3L_3543152_SNP [dm6]	G	A	4.392e^-5	0.96	UPSTREAM Eip63E INTRON Eip63E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	16768035	2R_16768035_SNP [dm3] 2R_20880530_SNP [dm6]	G	A	4.481e^-5	0.96	INTRON Cib2
2L	2339048	2L_2339048_SNP [dm3] 2L_2339048_SNP [dm6]	A	G	4.489e^-5	0.96	SYNONYMOUS_CODING eys INTRON CG9967
3L	18319082	3L_18319082_SNP [dm3] 3L_18325982_SNP [dm6]	A	G	4.678e^-5	0.96	INTERGENIC
3L	5373501	3L_5373501_SNP [dm3] 3L_5380401_SNP [dm6]	G	T	4.678e^-5	0.96	SYNONYMOUS_CODING Ir64a
2L	9951369	2L_9951369_SNP [dm3] 2L_9951369_SNP [dm6]	C	G	4.745e^-5	0.96	UPSTREAM mir-87 DOWNSTREAM CG13126 INTERGENIC
X	10110203	X_10110203_SNP [dm3] X_10216170_SNP [dm6]	T	G	4.766e^-5	0.96	UTR_3_PRIME l_1_G0230 INTRON CG2962	TF binding site BDTNP1_TFBS_sna
3L	10636005	3L_10636005_SNP [dm3] 3L_10642905_SNP [dm6]	A	T	4.849e^-5	0.96	UTR_3_PRIME CG14154 UPSTREAM CG14153 INTRON CG32066
3R	14765182	3R_14765182_SNP [dm3] 3R_18939460_SNP [dm6]	A	G	4.915e^-5	0.96	INTRON CG42613
3L	9359713	3L_9359713_SNP [dm3] 3L_9366613_SNP [dm6]	G	A	5.090e^-5	0.96	SYNONYMOUS_CODING Klp67A UPSTREAM CG4452	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12617248	2R_12617248_SNP [dm3] 2R_16729743_SNP [dm6]	A	C	5.106e^-5	0.96	INTRON CG30463
3R	7117238	3R_7117238_SNP [dm3] 3R_11291516_SNP [dm6]	T	A	5.185e^-5	0.96	INTRON CR31386
3R	4222188	3R_4222188_SNP [dm3] 3R_8396466_SNP [dm6]	T	C	5.313e^-5	0.96	INTRON CG45263
2L	13712206	2L_13712206_SNP [dm3] 2L_13712206_SNP [dm6]	T	C	5.315e^-5	0.96	INTRON CG31814
2L	9612734	2L_9612734_SNP [dm3] 2L_9612734_SNP [dm6]	G	C	5.322e^-5	0.96	UPSTREAM Trx-2 DOWNSTREAM gcm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	2633038	3L_2633038_SNP [dm3] 3L_2633038_SNP [dm6]	G	A	5.392e^-5	0.96	INTRON MEP-1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	13059674	2R_13059674_SNP [dm3] 2R_17172169_SNP [dm6]	T	C	5.451e^-5	0.96	INTERGENIC
2R	18964316	2R_18964316_SNP [dm3] 2R_23076793_SNP [dm6]	T	G	5.562e^-5	0.96	NON_SYNONYMOUS_CODING Art7 UTR_3_PRIME CG3085	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14829694	3L_14829694_SNP [dm3] 3L_14836594_SNP [dm6]	T	A	5.633e^-5	0.96	INTRON CG17839
3L	748416	3L_748416_SNP [dm3] 3L_748416_SNP [dm6]	T	C	5.692e^-5	0.96	UPSTREAM emc INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	19950779	3R_19950779_SNP [dm3] 3R_24125057_SNP [dm6]	C	T	5.722e^-5	0.96	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3899654	2L_3899654_SNP [dm3] 2L_3899654_SNP [dm6]	G	C	5.727e^-5	0.96	INTRON capu
2L	17344458	2L_17344458_SNP [dm3] 2L_17344458_SNP [dm6]	C	A	5.738e^-5	0.96	INTERGENIC
3L	19218496	3L_19218496_SNP [dm3] 3L_19225396_SNP [dm6]	T	G	5.761e^-5	0.96	INTRON fz2
2R	5395913	2R_5395913_SNP [dm3] 2R_9508408_SNP [dm6]	T	A	5.779e^-5	0.96	INTRON brp
3L	3543195	3L_3543195_SNP [dm3] 3L_3543195_SNP [dm6]	T	A	5.814e^-5	0.96	UPSTREAM Eip63E INTRON Eip63E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	18130346	3L_18130346_SNP [dm3] 3L_18137246_SNP [dm6]	T	A	5.862e^-5	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	17007539	X_17007539_SNP [dm3] X_17113506_SNP [dm6]	G	T	5.893e^-5	0.96	INTRON CG5004
3R	18449737	3R_18449737_SNP [dm3] 3R_22624015_SNP [dm6]	A	T	5.988e^-5	0.96	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	10948396	2R_10948396_SNP [dm3] 2R_15060891_SNP [dm6]	A	C	6.004e^-5	0.96	INTERGENIC
3R	6739065	3R_6739065_SNP [dm3] 3R_10913343_SNP [dm6]	G	T	6.011e^-5	0.96	INTERGENIC
X	19253800	X_19253800_SNP [dm3] X_19359767_SNP [dm6]	C	T	6.161e^-5	0.96	INTRON kek5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	19218559	3L_19218559_SNP [dm3] 3L_19225459_SNP [dm6]	C	T	6.196e^-5	0.96	INTRON fz2
3L	8047877	3L_8047877_SNP [dm3] 3L_8054777_SNP [dm6]	C	T	6.197e^-5	0.96	SYNONYMOUS_CODING bip1 DOWNSTREAM nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7101991	3R_7101991_SNP [dm3] 3R_11276269_SNP [dm6]	C	T	6.289e^-5	0.96	INTRON CR31386
2L	13746003	2L_13746003_SNP [dm3] 2L_13746003_SNP [dm6]	G	A	6.339e^-5	0.96	UPSTREAM TM9SF4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10949488	2R_10949488_SNP [dm3] 2R_15061983_SNP [dm6]	A	C	6.450e^-5	0.96	INTERGENIC
X	18049231	X_18049231_SNP [dm3] X_18155198_SNP [dm6]	T	C	6.528e^-5	0.96	UPSTREAM Frq1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	18318930	3L_18318930_SNP [dm3] 3L_18325830_SNP [dm6]	A	G	6.637e^-5	0.96	INTERGENIC
3L	18319064	3L_18319064_SNP [dm3] 3L_18325964_SNP [dm6]	A	C	6.984e^-5	0.96	INTERGENIC
2L	10548584	2L_10548584_SNP [dm3] 2L_10548584_SNP [dm6]	C	G	7.009e^-5	0.96	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8439675	X_8439675_SNP [dm3] X_8545642_SNP [dm6]	T	C	7.107e^-5	0.96	SYNONYMOUS_CODING Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9951483	2L_9951483_SNP [dm3] 2L_9951483_SNP [dm6]	T	A	7.170e^-5	0.96	UPSTREAM mir-87 DOWNSTREAM CG13126 INTERGENIC
3R	4671743	3R_4671743_SNP [dm3] 3R_8846021_SNP [dm6]	C	T	7.177e^-5	0.96	UTR_5_PRIME pyd INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3L	10636067	3L_10636067_SNP [dm3] 3L_10642967_SNP [dm6]	G	C	7.314e^-5	0.96	UTR_3_PRIME CG14154 UPSTREAM CG14153 INTRON CG32066
3L	12897731	3L_12897731_SNP [dm3] 3L_12904631_SNP [dm6]	C	T	7.384e^-5	0.96	UPSTREAM CG32117 INTERGENIC
X	5820050	X_5820050_SNP [dm3] X_5926017_SNP [dm6]	G	T	7.387e^-5	0.96	INTRON CG3726
2R	9433914	2R_9433914_SNP [dm3] 2R_13546409_SNP [dm6]	C	A	7.426e^-5	0.96	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
X	12614544	X_12614544_SNP [dm3] X_12720511_SNP [dm6]	C	T	7.444e^-5	0.96	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	5810910	2L_5810910_SNP [dm3] 2L_5810910_SNP [dm6]	T	C	7.582e^-5	0.96	UPSTREAM CG43307 DOWNSTREAM CR44575 & 1 other INTERGENIC
2R	17483013	2R_17483013_SNP [dm3] 2R_21595508_SNP [dm6]	T	C	7.661e^-5	0.96	INTERGENIC
X	18048479	X_18048479_SNP [dm3] X_18154446_SNP [dm6]	T	A	7.706e^-5	0.96	UPSTREAM Frq1 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	20130960	2R_20130960_SNP [dm3] 2R_24243437_SNP [dm6]	C	T	7.710e^-5	0.96	UTR_5_PRIME nord	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11247925	3R_11247925_SNP [dm3] 3R_15422203_SNP [dm6]	T	C	7.746e^-5	0.96	SYNONYMOUS_CODING CG6118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17344451	2L_17344451_SNP [dm3] 2L_17344451_SNP [dm6]	C	T	7.876e^-5	0.96	INTERGENIC
2L	12110714	2L_12110714_SNP [dm3] 2L_12110714_SNP [dm6]	T	A	7.902e^-5	0.96	UPSTREAM Phae2 DOWNSTREAM Phae1 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	10951546	2R_10951546_SNP [dm3] 2R_15064041_SNP [dm6]	T	G	7.963e^-5	0.96	INTERGENIC
3R	14870500	3R_14870500_SNP [dm3] 3R_19044778_SNP [dm6]	T	G	7.979e^-5	0.96	DOWNSTREAM cdi & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	18318995	3L_18318995_SNP [dm3] 3L_18325895_SNP [dm6]	C	T	7.990e^-5	0.96	INTERGENIC
X	4003414	X_4003414_SNP [dm3] X_4109381_SNP [dm6]	G	A	8.032e^-5	0.96	INTRON cib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3L	18318868	3L_18318868_SNP [dm3] 3L_18325768_SNP [dm6]	A	T	8.041e^-5	0.96	INTERGENIC
3L	4174288	3L_4174288_SNP [dm3] 3L_4174288_SNP [dm6]	G	T	8.166e^-5	0.96	SYNONYMOUS_CODING CG18675 DOWNSTREAM Ero1L & 1 other	TF binding site mE1_TFBS_sens
2L	14306464	2L_14306464_SNP [dm3] 2L_14306464_SNP [dm6]	C	G	8.183e^-5	0.96	INTRON wb	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
X	10873489	X_10873489_SNP [dm3] X_10979456_SNP [dm6]	C	T	8.320e^-5	0.96	INTRON CG42339
2L	12634792	2L_12634792_DEL [dm3] 2L_12634792_DEL [dm6]	ACATTAGGTACTATCA...	A	8.524e^-5	0.96	INTRON Ref2
2R	16878168	2R_16878168_SNP [dm3] 2R_20990663_SNP [dm6]	T	C	8.586e^-5	0.96	INTRON CG3216	TF binding site mE1_TFBS_inv
2L	8101986	2L_8101986_SNP [dm3] 2L_8101986_SNP [dm6]	T	G	8.592e^-5	0.96	INTRON Bsg	TF binding site mE1_TFBS_sbb
2R	14434029	2R_14434029_SNP [dm3] 2R_18546524_SNP [dm6]	G	T	8.607e^-5	0.96	INTRON Rgk2	TF binding site mE1_TFBS_cad
2R	16878160	2R_16878160_SNP [dm3] 2R_20990655_SNP [dm6]	T	G	8.705e^-5	0.96	INTRON CG3216	TF binding site mE1_TFBS_inv
X	22332766	X_22332766_SNP [dm3] X_22930930_SNP [dm6]	G	A	8.740e^-5	0.96	INTERGENIC	transposable element FlyBase
X	10928243	X_10928243_SNP [dm3] X_11034210_SNP [dm6]	T	C	8.826e^-5	0.96	INTRON CG42339
3R	860522	3R_860522_SNP [dm3] 3R_5034800_SNP [dm6]	G	C	8.848e^-5	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	9331626	X_9331626_SNP [dm3] X_9437593_SNP [dm6]	T	G	8.942e^-5	0.96	INTRON mgl
3R	9946305	3R_9946305_SNP [dm3] 3R_14120583_SNP [dm6]	A	C	9.012e^-5	0.96	INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10752423	3L_10752423_SNP [dm3] 3L_10759323_SNP [dm6]	G	T	9.080e^-5	0.96	INTERGENIC
3L	14829770	3L_14829770_SNP [dm3] 3L_14836670_SNP [dm6]	G	T	9.302e^-5	0.96	INTRON CG17839
2R	16768080	2R_16768080_SNP [dm3] 2R_20880575_SNP [dm6]	C	A	9.356e^-5	0.96	INTRON Cib2
2R	10527546	2R_10527546_DEL [dm3] 2R_14640041_DEL [dm6]	AGGAACAC	A	9.473e^-5	0.96	DOWNSTREAM CG12862 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	14863733	X_14863733_SNP [dm3] X_14969700_SNP [dm6]	T	A	9.504e^-5	0.96	INTRON eag
X	12286013	X_12286013_DEL [dm3] X_12391980_DEL [dm6]	CG	C	9.589e^-5	0.96	INTERGENIC
X	12286017	X_12286017_SNP [dm3] X_12391984_SNP [dm6]	A	T	9.589e^-5	0.96	INTERGENIC
X	12286018	X_12286018_SNP [dm3] X_12391985_SNP [dm6]	A	T	9.589e^-5	0.96	INTERGENIC
X	12286024	X_12286024_SNP [dm3] X_12391991_SNP [dm6]	A	G	9.589e^-5	0.96	INTERGENIC
X	12286025	X_12286025_SNP [dm3] X_12391992_SNP [dm6]	C	A	9.589e^-5	0.96	INTERGENIC
2L	4040993	2L_4040993_INS [dm3] 2L_4040993_INS [dm6]	C	CACCCC	9.610e^-5	0.96	INTRON ed
3R	19950758	3R_19950758_SNP [dm3] 3R_24125036_SNP [dm6]	G	A	9.662e^-5	0.96	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17390404	2R_17390404_SNP [dm3] 2R_21502899_SNP [dm6]	T	A	9.675e^-5	0.96	INTRON MESK2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14421839	2R_14421839_SNP [dm3] 2R_18534334_SNP [dm6]	C	T	9.697e^-5	0.96	SYNONYMOUS_CODING CG10924	TF binding site mE1_TFBS_chinmo
2L	5462768	2L_5462768_SNP [dm3] 2L_5462768_SNP [dm6]	A	G	9.808e^-5	0.96	INTRON mid
3L	18319074	3L_18319074_SNP [dm3] 3L_18325974_SNP [dm6]	T	G	9.875e^-5	0.96	INTERGENIC
3L	17337805	3L_17337805_SNP [dm3] 3L_17344705_SNP [dm6]	A	T	1.002e^-4	0.96	UPSTREAM brv2 DOWNSTREAM Mip INTERGENIC
2L	12851975	2L_12851975_SNP [dm3] 2L_12851975_SNP [dm6]	T	C	1.023e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_inv
2L	10259756	2L_10259756_SNP [dm3] 2L_10259756_SNP [dm6]	C	A	1.026e^-4	0.96	START_GAINED Pten UTR_5_PRIME Pten INTRON Pten	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_Kr
3L	12897612	3L_12897612_SNP [dm3] 3L_12904512_SNP [dm6]	G	A	1.029e^-4	0.96	UPSTREAM CG32117 INTERGENIC
3L	5240012	3L_5240012_SNP [dm3] 3L_5246912_SNP [dm6]	T	C	1.036e^-4	0.96	INTRON shep
2R	4679025	2R_4679025_SNP [dm3] 2R_8791520_SNP [dm6]	T	A	1.055e^-4	0.96	INTERGENIC
X	10110214	X_10110214_SNP [dm3] X_10216181_SNP [dm6]	G	A	1.055e^-4	0.96	UTR_3_PRIME l_1_G0230 INTRON CG2962
3R	7186261	3R_7186261_SNP [dm3] 3R_11360539_SNP [dm6]	G	A	1.059e^-4	0.96	INTRON pros	regulatory region REDfly_CRMs
2R	10948882	2R_10948882_SNP [dm3] 2R_15061377_SNP [dm6]	G	A	1.062e^-4	0.96	INTERGENIC
3R	15920143	3R_15920143_SNP [dm3] 3R_20094421_SNP [dm6]	G	C	1.063e^-4	0.96	INTERGENIC
3L	4185927	3L_4185927_SNP [dm3] 3L_4185927_SNP [dm6]	G	C	1.064e^-4	0.96	DOWNSTREAM VhaM9.7-c INTRON CG18675 & 1 other
3L	18318934	3L_18318934_SNP [dm3] 3L_18325834_SNP [dm6]	T	G	1.065e^-4	0.96	INTERGENIC
3R	22449905	3R_22449905_SNP [dm3] 3R_26624183_SNP [dm6]	A	C	1.104e^-4	0.96	UPSTREAM TwdlB DOWNSTREAM TwdlL INTERGENIC
2R	7605864	2R_7605864_SNP [dm3] 2R_11718359_SNP [dm6]	T	C	1.117e^-4	0.96	INTRON pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3542652	3L_3542652_SNP [dm3] 3L_3542652_SNP [dm6]	T	C	1.126e^-4	0.96	UPSTREAM Eip63E INTRON Eip63E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	11830958	X_11830958_SNP [dm3] X_11936925_SNP [dm6]	A	G	1.129e^-4	0.96	INTRON cac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11675840	2R_11675840_DEL [dm3] 2R_15788335_DEL [dm6]	ATGTTGGCCAAA...	A	1.130e^-4	0.96	INTRON Zasp52
2L	3494235	2L_3494235_SNP [dm3] 2L_3494235_SNP [dm6]	G	A	1.133e^-4	0.96	UTR_3_PRIME tim
3L	750433	3L_750433_SNP [dm3] 3L_750433_SNP [dm6]	G	C	1.140e^-4	0.96	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
3R	6901210	3R_6901210_SNP [dm3] 3R_11075488_SNP [dm6]	T	C	1.147e^-4	0.96	INTERGENIC
3L	3543219	3L_3543219_SNP [dm3] 3L_3543219_SNP [dm6]	C	A	1.154e^-4	0.96	UPSTREAM Eip63E INTRON Eip63E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	6023026	3L_6023026_SNP [dm3] 3L_6029926_SNP [dm6]	A	G	1.160e^-4	0.96	INTERGENIC
2L	8662102	2L_8662102_SNP [dm3] 2L_8662102_SNP [dm6]	A	G	1.168e^-4	0.96	INTRON Sema-1a
X	18479515	X_18479515_SNP [dm3] X_18585482_SNP [dm6]	C	G	1.179e^-4	0.96	DOWNSTREAM CR43492 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10594117	X_10594117_DEL [dm3] X_10700084_DEL [dm6]	AACACCAGACGCAGCA...	A	1.181e^-4	0.96		TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6740800	2R_6740800_SNP [dm3] 2R_10853295_SNP [dm6]	T	C	1.182e^-4	0.96	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20841833	3R_20841833_SNP [dm3] 3R_25016111_SNP [dm6]	C	T	1.201e^-4	0.96	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad
X	20563396	X_20563396_DEL [dm3] X_20692369_DEL [dm6]	ACATTAAGTTA...	A	1.203e^-4	0.96	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10395116	X_10395116_INS [dm3] X_10501083_INS [dm6]	A	ACA	1.216e^-4	0.96	INTRON spri
2R	16768041	2R_16768041_SNP [dm3] 2R_20880536_SNP [dm6]	G	T	1.221e^-4	0.96	INTRON Cib2
3L	9973121	3L_9973121_SNP [dm3] 3L_9980021_SNP [dm6]	A	C	1.222e^-4	0.96	INTRON dpr6
3L	750582	3L_750582_SNP [dm3] 3L_750582_SNP [dm6]	T	C	1.227e^-4	0.96	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco
3L	13513292	3L_13513292_INS [dm3] 3L_13520192_INS [dm6]	C	CTCAGTTTGATGGC...	1.231e^-4	0.96	UPSTREAM CG10710 INTERGENIC
3L	3543121	3L_3543121_SNP [dm3] 3L_3543121_SNP [dm6]	C	G	1.240e^-4	0.96	UPSTREAM Eip63E INTRON Eip63E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	15895610	2L_15895610_SNP [dm3] 2L_15895610_SNP [dm6]	A	C	1.242e^-4	0.96	UTR_5_PRIME CG31735
3L	10250805	3L_10250805_SNP [dm3] 3L_10257705_SNP [dm6]	G	A	1.244e^-4	0.96	INTERGENIC
2R	16783240	2R_16783240_SNP [dm3] 2R_20895735_SNP [dm6]	A	G	1.251e^-4	0.96	SYNONYMOUS_CODING otp
3R	20396264	3R_20396264_SNP [dm3] 3R_24570542_SNP [dm6]	G	T	1.251e^-4	0.96	INTRON CG13624
3R	22868787	3R_22868787_SNP [dm3] 3R_27043065_SNP [dm6]	G	A	1.264e^-4	0.96	INTRON RYa-R
3L	7242386	3L_7242386_SNP [dm3] 3L_7249286_SNP [dm6]	A	C	1.264e^-4	0.96	UTR_5_PRIME Cdc27 DOWNSTREAM MED4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
X	12190274	X_12190274_SNP [dm3] X_12296241_SNP [dm6]	C	T	1.272e^-4	0.96	INTRON Ten-a
X	10396236	X_10396236_DEL [dm3] X_10502203_DEL [dm6]	AA	A	1.273e^-4	0.96	INTRON spri	TF binding site mE1_TFBS_inv
2R	19257729	2R_19257729_SNP [dm3] 2R_23370206_SNP [dm6]	G	T	1.276e^-4	0.96	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_sens
3R	19223420	3R_19223420_SNP [dm3] 3R_23397698_SNP [dm6]	A	T	1.301e^-4	0.96	INTERGENIC
3L	15206951	3L_15206951_SNP [dm3] 3L_15213851_SNP [dm6]	A	C	1.306e^-4	0.96	INTERGENIC
2L	15435019	2L_15435019_SNP [dm3] 2L_15435019_SNP [dm6]	C	T	1.307e^-4	0.96	UTR_3_PRIME CG4161 UPSTREAM CR44861
X	14696503	X_14696503_SNP [dm3] X_14802470_SNP [dm6]	G	A	1.312e^-4	0.96	INTRON rut
3L	11890612	3L_11890612_SNP [dm3] 3L_11897512_SNP [dm6]	T	C	1.312e^-4	0.96	INTRON CG44837
3L	18318996	3L_18318996_INS [dm3] 3L_18325896_INS [dm6]	G	GA	1.316e^-4	0.96	INTERGENIC
X	18899484	X_18899484_SNP [dm3] X_19005451_SNP [dm6]	A	T	1.316e^-4	0.96	INTRON CG43759
3L	16758062	3L_16758062_SNP [dm3] 3L_16764962_SNP [dm6]	A	T	1.318e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9214611	3L_9214611_SNP [dm3] 3L_9221511_SNP [dm6]	T	A	1.321e^-4	0.96	UPSTREAM CR45408 INTERGENIC
2L	10548595	2L_10548595_DEL [dm3] 2L_10548595_DEL [dm6]	CTTTC	C	1.323e^-4	0.96	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3639625	3L_3639625_SNP [dm3] 3L_3639625_SNP [dm6]	T	C	1.335e^-4	0.96	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7464972	2R_7464972_SNP [dm3] 2R_11577467_SNP [dm6]	T	C	1.336e^-4	0.96	DOWNSTREAM tou INTERGENIC
2L	5811925	2L_5811925_SNP [dm3] 2L_5811925_SNP [dm6]	G	T	1.343e^-4	0.96	UTR_3_PRIME CG43307
3R	15555684	3R_15555684_SNP [dm3] 3R_19729962_SNP [dm6]	G	A	1.360e^-4	0.96	UPSTREAM GluClalpha INTERGENIC
2R	10959870	2R_10959870_SNP [dm3] 2R_15072365_SNP [dm6]	A	G	1.367e^-4	0.96	INTERGENIC
3L	745799	3L_745799_SNP [dm3] 3L_745799_SNP [dm6]	T	A	1.367e^-4	0.96	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	745800	3L_745800_SNP [dm3] 3L_745800_SNP [dm6]	A	G	1.367e^-4	0.96	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15060169	2R_15060169_SNP [dm3] 2R_19172664_SNP [dm6]	A	T	1.384e^-4	0.96	INTRON CG10737
3L	5244062	3L_5244062_SNP [dm3] 3L_5250962_SNP [dm6]	G	T	1.384e^-4	0.96	INTRON shep
2R	20137894	2R_20137894_SNP [dm3] 2R_24250371_SNP [dm6]	A	T	1.388e^-4	0.96	UPSTREAM snoRNA:Me18S-A1597 INTRON nord & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3543025	3L_3543025_SNP [dm3] 3L_3543025_SNP [dm6]	T	G	1.388e^-4	0.96	UPSTREAM Eip63E INTRON Eip63E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	18319092	3L_18319092_SNP [dm3] 3L_18325992_SNP [dm6]	A	C	1.392e^-4	0.96	INTERGENIC
X	3241590	X_3241590_SNP [dm3] X_3347557_SNP [dm6]	A	T	1.394e^-4	0.96	INTRON CR44886	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3241591	X_3241591_SNP [dm3] X_3347558_SNP [dm6]	T	G	1.394e^-4	0.96	INTRON CR44886	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21388300	3L_21388300_DEL [dm3] 3L_21395200_DEL [dm6]	TGTCTCGAGAAAAAAATTCT...	T	1.394e^-4	0.96	INTRON rgn
2L	13531794	2L_13531794_SNP [dm3] 2L_13531794_SNP [dm6]	T	A	1.397e^-4	0.96	UPSTREAM CG33644 DOWNSTREAM CG33643 INTRON B4
X	12696031	X_12696031_SNP [dm3] X_12801998_SNP [dm6]	C	A	1.409e^-4	0.96	SYNONYMOUS_CODING CG3775 INTRON Pde9
2L	3899652	2L_3899652_SNP [dm3] 2L_3899652_SNP [dm6]	T	G	1.416e^-4	0.96	INTRON capu
X	5784842	X_5784842_SNP [dm3] X_5890809_SNP [dm6]	C	T	1.417e^-4	0.96	INTRON CR45668	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	46947	3R_46947_SNP [dm3] 3R_4221225_SNP [dm6]	A	G	1.419e^-4	0.96	NON_SYNONYMOUS_CODING aux	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13297478	3L_13297478_SNP [dm3] 3L_13304378_SNP [dm6]	A	G	1.428e^-4	0.96	DOWNSTREAM CR44555 INTERGENIC
2L	11511118	2L_11511118_SNP [dm3] 2L_11511118_SNP [dm6]	G	A	1.433e^-4	0.96	UTR_3_PRIME CG6509 INTRON CG6509	TF binding site mE1_TFBS_cad
X	3241593	X_3241593_SNP [dm3] X_3347560_SNP [dm6]	T	G	1.440e^-4	0.96	INTRON CR44886	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18480919	3R_18480919_SNP [dm3] 3R_22655197_SNP [dm6]	T	G	1.441e^-4	0.96	INTRON CG45058
2L	3875941	2L_3875941_SNP [dm3] 2L_3875941_SNP [dm6]	A	G	1.455e^-4	0.96	INTRON capu
2R	18446758	2R_18446758_SNP [dm3] 2R_22559253_SNP [dm6]	G	A	1.472e^-4	0.96	INTRON px
3L	745712	3L_745712_SNP [dm3] 3L_745712_SNP [dm6]	C	A	1.487e^-4	0.96	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8568644	3L_8568644_SNP [dm3] 3L_8575544_SNP [dm6]	A	T	1.488e^-4	0.96	INTRON CG6638	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	11840835	X_11840835_SNP [dm3] X_11946802_SNP [dm6]	T	C	1.495e^-4	0.96	INTRON cac
3L	18319018	3L_18319018_SNP [dm3] 3L_18325918_SNP [dm6]	T	A	1.497e^-4	0.96	INTERGENIC
2L	7317264	2L_7317264_SNP [dm3] 2L_7317264_SNP [dm6]	C	A	1.498e^-4	0.96	DOWNSTREAM wg INTERGENIC
3R	19908865	3R_19908865_SNP [dm3] 3R_24083143_SNP [dm6]	C	T	1.500e^-4	0.96	INTRON 4EHP
2L	5328595	2L_5328595_SNP [dm3] 2L_5328595_SNP [dm6]	A	T	1.503e^-4	0.96	NON_SYNONYMOUS_CODING CG14022 DOWNSTREAM cype
X	17782290	X_17782290_SNP [dm3] X_17888257_SNP [dm6]	T	G	1.511e^-4	0.96	SYNONYMOUS_CODING CG6788	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	14566536	X_14566536_SNP [dm3] X_14672503_SNP [dm6]	T	G	1.519e^-4	0.96	INTERGENIC
2R	7542303	2R_7542303_SNP [dm3] 2R_11654798_SNP [dm6]	G	A	1.530e^-4	0.96	UPSTREAM CG13198 INTRON Roc2
3L	16388898	3L_16388898_SNP [dm3] 3L_16395798_SNP [dm6]	G	T	1.533e^-4	0.96	SYNONYMOUS_CODING Grp INTRON CG44836
3L	16388901	3L_16388901_SNP [dm3] 3L_16395801_SNP [dm6]	G	C	1.533e^-4	0.96	SYNONYMOUS_CODING Grp INTRON CG44836
3R	17736925	3R_17736925_SNP [dm3] 3R_21911203_SNP [dm6]	T	A	1.539e^-4	0.96	UPSTREAM CG6690 INTERGENIC
3L	745715	3L_745715_SNP [dm3] 3L_745715_SNP [dm6]	C	A	1.544e^-4	0.96	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	498822	2L_498822_SNP [dm3] 2L_498822_SNP [dm6]	T	G	1.545e^-4	0.96	INTRON ush
X	18049220	X_18049220_SNP [dm3] X_18155187_SNP [dm6]	A	T	1.546e^-4	0.96	UPSTREAM Frq1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	8572088	3L_8572088_SNP [dm3] 3L_8578988_SNP [dm6]	T	C	1.556e^-4	0.96	UTR_5_PRIME CG43078 INTRON CG43078
X	5406711	X_5406711_SNP [dm3] X_5512678_SNP [dm6]	A	C	1.558e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17916147	3R_17916147_SNP [dm3] 3R_22090425_SNP [dm6]	A	T	1.561e^-4	0.96	INTRON CG5778
3L	10636076	3L_10636076_SNP [dm3] 3L_10642976_SNP [dm6]	C	G	1.564e^-4	0.96	UTR_3_PRIME CG14154 UPSTREAM CG14153 INTRON CG32066
3L	18318951	3L_18318951_SNP [dm3] 3L_18325851_SNP [dm6]	C	T	1.566e^-4	0.96	INTERGENIC
3L	4712189	3L_4712189_SNP [dm3] 3L_4712189_SNP [dm6]	C	T	1.569e^-4	0.96	INTRON RhoGEF64C
2R	8638370	2R_8638370_INS [dm3] 2R_12750865_INS [dm6]	A	AGAAAAAAAACCA...	1.570e^-4	0.96	UTR_3_PRIME CG42663 DOWNSTREAM mos
3L	4185929	3L_4185929_SNP [dm3] 3L_4185929_SNP [dm6]	C	T	1.586e^-4	0.96	DOWNSTREAM VhaM9.7-c INTRON CG18675 & 1 other
3L	13295773	3L_13295773_SNP [dm3] 3L_13302673_SNP [dm6]	C	G	1.591e^-4	0.96	UPSTREAM CR44555 DOWNSTREAM CR44557 & 1 other EXON CR43911
3L	3688857	3L_3688857_SNP [dm3] 3L_3688857_SNP [dm6]	A	G	1.598e^-4	0.96	EXON CR43484
3L	19510735	3L_19510735_SNP [dm3] 3L_19517635_SNP [dm6]	G	C	1.599e^-4	0.96	UTR_3_PRIME Cpr76Ba	TF binding site BDTNP1_TFBS_twi
3L	13018088	3L_13018088_SNP [dm3] 3L_13024988_SNP [dm6]	C	T	1.602e^-4	0.96	SYNONYMOUS_CODING Zmynd10 DOWNSTREAM snoRNA:Me28S-A774a & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12963076	3L_12963076_SNP [dm3] 3L_12969976_SNP [dm6]	G	A	1.612e^-4	0.96	INTERGENIC
2R	5395952	2R_5395952_SNP [dm3] 2R_9508447_SNP [dm6]	T	C	1.620e^-4	0.96	INTRON brp
X	4012794	X_4012794_SNP [dm3] X_4118761_SNP [dm6]	A	G	1.620e^-4	0.96	NON_SYNONYMOUS_CODING tyf UTR_5_PRIME tyf UPSTREAM tyf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	26547340	3R_26547340_SNP [dm3] 3R_30721618_SNP [dm6]	T	A	1.626e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4712218	3L_4712218_SNP [dm3] 3L_4712218_SNP [dm6]	G	T	1.642e^-4	0.96	INTRON RhoGEF64C
X	21346473	X_21346473_SNP [dm3] X_21475446_SNP [dm6]	C	T	1.646e^-4	0.96	INTERGENIC
3L	18111197	3L_18111197_SNP [dm3] 3L_18118097_SNP [dm6]	A	C	1.652e^-4	0.96	UTR_3_PRIME CG32195 INTRON CG7341
X	2399022	X_2399022_SNP [dm3] X_2504989_SNP [dm6]	T	A	1.669e^-4	0.96	INTRON trol	TF binding site mE1_TFBS_cad
3R	3761085	3R_3761085_SNP [dm3] 3R_7935363_SNP [dm6]	T	G	1.678e^-4	0.96	UTR_3_PRIME dsx INTRON dsx	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3761086	3R_3761086_SNP [dm3] 3R_7935364_SNP [dm6]	C	T	1.678e^-4	0.96	UTR_3_PRIME dsx INTRON dsx	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3963521	3R_3963521_SNP [dm3] 3R_8137799_SNP [dm6]	A	G	1.679e^-4	0.96	INTERGENIC
3L	10981080	3L_10981080_DEL [dm3] 3L_10987980_DEL [dm6]	CC	G	1.679e^-4	0.96	INTRON klu
X	15281412	X_15281412_DEL [dm3] X_15387379_DEL [dm6]	AG	A	1.682e^-4	0.96	UTR_3_PRIME Cngl
3R	6576078	3R_6576078_SNP [dm3] 3R_10750356_SNP [dm6]	T	C	1.682e^-4	0.96	UTR_5_PRIME TkR86C
3R	3791733	3R_3791733_SNP [dm3] 3R_7966011_SNP [dm6]	A	G	1.686e^-4	0.96	INTRON dsx	TF binding site mE1_TFBS_cad
3L	743355	3L_743355_SNP [dm3] 3L_743355_SNP [dm6]	A	G	1.687e^-4	0.96	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	22747012	3L_22747012_SNP [dm3] 3L_22753912_SNP [dm6]	T	G	1.687e^-4	0.96	INTRON SPoCk
3R	19233214	3R_19233214_INS [dm3] 3R_23407492_INS [dm6]	T	TT	1.704e^-4	0.96	DOWNSTREAM Ir94e INTERGENIC
3L	15187165	3L_15187165_SNP [dm3] 3L_15194065_SNP [dm6]	T	G	1.707e^-4	0.96	INTERGENIC
2L	14301888	2L_14301888_SNP [dm3] 2L_14301888_SNP [dm6]	T	G	1.708e^-4	0.96	INTRON wb
3R	17834628	3R_17834628_SNP [dm3] 3R_22008906_SNP [dm6]	A	G	1.712e^-4	0.96	UTR_3_PRIME Eip93F
2R	17317326	2R_17317326_INS [dm3] 2R_21429821_INS [dm6]	T	TTCAGTTAGCT...	1.714e^-4	0.96	INTRON Sdc
2R	6098420	2R_6098420_SNP [dm3] 2R_10210915_SNP [dm6]	T	A	1.749e^-4	0.96	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	15385777	2R_15385777_SNP [dm3] 2R_19498272_SNP [dm6]	C	T	1.755e^-4	0.96	SYNONYMOUS_CODING CG15120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4479997	3L_4479997_SNP [dm3] 3L_4479997_SNP [dm6]	C	T	1.763e^-4	0.96	UPSTREAM CG7465 INTERGENIC
2L	13989941	2L_13989941_SNP [dm3] 2L_13989941_SNP [dm6]	A	G	1.763e^-4	0.96	INTRON rk
3R	10132753	3R_10132753_SNP [dm3] 3R_14307031_SNP [dm6]	G	A	1.765e^-4	0.96	SPLICE_SITE_REGION su_Hw_ SYNONYMOUS_CODING su_Hw_	TF binding site mE1_TFBS_sens
X	17013991	X_17013991_SNP [dm3] X_17119958_SNP [dm6]	C	A	1.766e^-4	0.96	INTRON CG5004
2R	4678999	2R_4678999_SNP [dm3] 2R_8791494_SNP [dm6]	T	C	1.773e^-4	0.96	INTERGENIC
2R	16652818	2R_16652818_SNP [dm3] 2R_20765313_SNP [dm6]	G	A	1.773e^-4	0.96	INTERGENIC
3R	10836659	3R_10836659_SNP [dm3] 3R_15010937_SNP [dm6]	A	C	1.783e^-4	0.96	INTERGENIC
3L	18319038	3L_18319038_SNP [dm3] 3L_18325938_SNP [dm6]	A	G	1.785e^-4	0.96	INTERGENIC
X	17782288	X_17782288_SNP [dm3] X_17888255_SNP [dm6]	G	A	1.785e^-4	0.96	NON_SYNONYMOUS_CODING CG6788	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	7646883	X_7646883_SNP [dm3] X_7752850_SNP [dm6]	A	T	1.788e^-4	0.96	INTERGENIC
3L	4181739	3L_4181739_SNP [dm3] 3L_4181739_SNP [dm6]	T	C	1.790e^-4	0.96	SYNONYMOUS_CODING Teh2 DOWNSTREAM Teh3 INTRON CG18675	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2778410	X_2778410_SNP [dm3] X_2884377_SNP [dm6]	T	A	1.794e^-4	0.96	UPSTREAM CG14418 DOWNSTREAM CG14419 INTRON kirre
X	10395901	X_10395901_SNP [dm3] X_10501868_SNP [dm6]	T	C	1.798e^-4	0.96	INTRON spri
3L	16760655	3L_16760655_SNP [dm3] 3L_16767555_SNP [dm6]	G	A	1.799e^-4	0.96	INTRON Nrt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11250844	3R_11250844_SNP [dm3] 3R_15425122_SNP [dm6]	A	T	1.800e^-4	0.96	INTRON CG6118	TF binding site mE1_TFBS_cad
2L	1023471	2L_1023471_SNP [dm3] 2L_1023471_SNP [dm6]	G	T	1.800e^-4	0.96	INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13997619	3L_13997619_SNP [dm3] 3L_14004519_SNP [dm6]	C	T	1.802e^-4	0.96	INTRON upSET	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
2L	12617621	2L_12617621_SNP [dm3] 2L_12617621_SNP [dm6]	G	T	1.802e^-4	0.96	UPSTREAM nub INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_Trl
3L	9606684	3L_9606684_SNP [dm3] 3L_9613584_SNP [dm6]	G	A	1.812e^-4	0.96	NON_SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo
2R	17996730	2R_17996730_SNP [dm3] 2R_22109225_SNP [dm6]	A	T	1.812e^-4	0.96	INTRON Vrp1
3R	14075676	3R_14075676_SNP [dm3] 3R_18249954_SNP [dm6]	C	T	1.823e^-4	0.96	UTR_3_PRIME 14-3-3epsilon	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8901888	2R_8901888_INS [dm3] 2R_13014383_INS [dm6]	T	TT	1.826e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10785522	2R_10785522_SNP [dm3] 2R_14898017_SNP [dm6]	G	A	1.834e^-4	0.96	UPSTREAM Cyp317a1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	11250874	3R_11250874_SNP [dm3] 3R_15425152_SNP [dm6]	A	T	1.841e^-4	0.96	INTRON CG6118	TF binding site mE1_TFBS_cad
3R	14765360	3R_14765360_SNP [dm3] 3R_18939638_SNP [dm6]	C	T	1.870e^-4	0.96	INTRON CG42613
X	21315695	X_21315695_INS [dm3] X_21444668_INS [dm6]	T	TTATTTC	1.876e^-4	0.96	INTRON CG42343
2L	9564789	2L_9564789_SNP [dm3] 2L_9564789_SNP [dm6]	G	A	1.878e^-4	0.96	INTRON jp
3R	26110232	3R_26110232_SNP [dm3] 3R_30284510_SNP [dm6]	G	A	1.879e^-4	0.96	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12614445	2L_12614445_SNP [dm3] 2L_12614445_SNP [dm6]	C	T	1.889e^-4	0.96	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	2698813	X_2698813_SNP [dm3] X_2804780_SNP [dm6]	A	T	1.894e^-4	0.96	INTRON kirre
2R	13056878	2R_13056878_SNP [dm3] 2R_17169373_SNP [dm6]	G	A	1.895e^-4	0.96	INTERGENIC
3L	10191298	3L_10191298_SNP [dm3] 3L_10198198_SNP [dm6]	C	T	1.904e^-4	0.96	INTRON ect
2R	16615322	2R_16615322_SNP [dm3] 2R_20727817_SNP [dm6]	G	C	1.910e^-4	0.96	DOWNSTREAM CG13442 INTRON dpr	TF binding site mE1_TFBS_chinmo
X	12286007	X_12286007_SNP [dm3] X_12391974_SNP [dm6]	G	A	1.926e^-4	0.96	INTERGENIC
2L	4749026	2L_4749026_SNP [dm3] 2L_4749026_SNP [dm6]	A	G	1.945e^-4	0.96	INTRON CG15630
3R	10132322	3R_10132322_SNP [dm3] 3R_14306600_SNP [dm6]	C	G	1.950e^-4	0.96	SPLICE_SITE_REGION su_Hw_ INTRON su_Hw_
3L	11531152	3L_11531152_SNP [dm3] 3L_11538052_SNP [dm6]	A	G	1.959e^-4	0.96	INTRON Mob2
2R	16615536	2R_16615536_SNP [dm3] 2R_20728031_SNP [dm6]	T	C	1.961e^-4	0.96	UTR_3_PRIME CG13442 INTRON dpr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2941879	2R_2941879_SNP [dm3] 2R_7054374_SNP [dm6]	C	T	1.971e^-4	0.96	UTR_3_PRIME Tsp42En UPSTREAM Tsp42Eo DOWNSTREAM Tsp42Ep & 1 other
3R	9946325	3R_9946325_SNP [dm3] 3R_14120603_SNP [dm6]	C	A	1.972e^-4	0.96	SPLICE_SITE_REGION Abi INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13847705	3R_13847705_SNP [dm3] 3R_18021983_SNP [dm6]	C	T	1.975e^-4	0.96	DOWNSTREAM DNaseII INTRON CG7785	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	13334141	3L_13334141_SNP [dm3] 3L_13341041_SNP [dm6]	C	T	1.975e^-4	0.96	INTERGENIC
3L	10707169	3L_10707169_SNP [dm3] 3L_10714069_SNP [dm6]	A	C	1.987e^-4	0.96	INTERGENIC
3L	10640455	3L_10640455_SNP [dm3] 3L_10647355_SNP [dm6]	G	T	1.988e^-4	0.96	INTRON CG32066
X	21346322	X_21346322_SNP [dm3] X_21475295_SNP [dm6]	G	A	2.020e^-4	0.96	INTERGENIC
X	18477432	X_18477432_SNP [dm3] X_18583399_SNP [dm6]	G	A	2.022e^-4	0.96	INTERGENIC
3L	13347265	3L_13347265_INS [dm3] 3L_13354165_INS [dm6]	T	TGAAAACT	2.023e^-4	0.96	INTRON CG17687
X	10396311	X_10396311_SNP [dm3] X_10502278_SNP [dm6]	G	A	2.029e^-4	0.96	INTRON spri	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	10396320	X_10396320_SNP [dm3] X_10502287_SNP [dm6]	A	T	2.029e^-4	0.96	INTRON spri	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11468709	3L_11468709_SNP [dm3] 3L_11475609_SNP [dm6]	A	T	2.035e^-4	0.96	DOWNSTREAM Vha16-2 INTERGENIC
3L	1459683	3L_1459683_SNP [dm3] 3L_1459683_SNP [dm6]	G	A	2.040e^-4	0.96	INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	19218510	3L_19218510_SNP [dm3] 3L_19225410_SNP [dm6]	C	A	2.046e^-4	0.96	INTRON fz2
X	10039834	X_10039834_SNP [dm3] X_10145801_SNP [dm6]	G	C	2.052e^-4	0.96	INTRON CR44894 & 1 other
3R	18074827	3R_18074827_SNP [dm3] 3R_22249105_SNP [dm6]	G	A	2.060e^-4	0.96	INTRON SKIP
2L	5328583	2L_5328583_SNP [dm3] 2L_5328583_SNP [dm6]	A	G	2.065e^-4	0.96	SYNONYMOUS_CODING CG14022 DOWNSTREAM cype
3L	5045245	3L_5045245_SNP [dm3] 3L_5045245_SNP [dm6]	T	A	2.065e^-4	0.96	INTRON Con
3L	10641007	3L_10641007_SNP [dm3] 3L_10647907_SNP [dm6]	T	G	2.066e^-4	0.96	INTRON CG32066
2R	6098361	2R_6098361_SNP [dm3] 2R_10210856_SNP [dm6]	T	A	2.067e^-4	0.96	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	2266770	X_2266770_INS [dm3] X_2372737_INS [dm6]	T	TG	2.070e^-4	0.96	INTRON PsGEF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2266775	X_2266775_SNP [dm3] X_2372742_SNP [dm6]	A	C	2.070e^-4	0.96	INTRON PsGEF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5492040	2L_5492040_SNP [dm3] 2L_5492040_SNP [dm6]	C	T	2.077e^-4	0.96	INTERGENIC
3L	2345327	3L_2345327_SNP [dm3] 3L_2345327_SNP [dm6]	A	T	2.078e^-4	0.96	UTR_3_PRIME MsR1
2R	17989205	2R_17989205_SNP [dm3] 2R_22101700_SNP [dm6]	A	G	2.078e^-4	0.96	INTERGENIC
2L	5811400	2L_5811400_SNP [dm3] 2L_5811400_SNP [dm6]	C	T	2.083e^-4	0.96	UPSTREAM CG43307 DOWNSTREAM CR44576 INTERGENIC
3L	5244901	3L_5244901_SNP [dm3] 3L_5251801_SNP [dm6]	T	C	2.084e^-4	0.96	INTRON shep
3L	18319076	3L_18319076_SNP [dm3] 3L_18325976_SNP [dm6]	A	C	2.092e^-4	0.96	INTERGENIC
2R	13486999	2R_13486999_SNP [dm3] 2R_17599494_SNP [dm6]	C	T	2.094e^-4	0.96	SYNONYMOUS_CODING CG42649 UPSTREAM CG43920 INTRON lack
2R	13487127	2R_13487127_SNP [dm3] 2R_17599622_SNP [dm6]	A	T	2.094e^-4	0.96	UPSTREAM CG43920 & 1 other INTRON lack
3L	9972664	3L_9972664_SNP [dm3] 3L_9979564_SNP [dm6]	C	T	2.101e^-4	0.96	INTRON dpr6
X	15588417	X_15588417_SNP [dm3] X_15694384_SNP [dm6]	A	G	2.102e^-4	0.96	UPSTREAM CR45524 DOWNSTREAM CR45526 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	10528458	3R_10528458_SNP [dm3] 3R_14702736_SNP [dm6]	T	A	2.111e^-4	0.96	INTRON kibra	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	9562332	2L_9562332_SNP [dm3] 2L_9562332_SNP [dm6]	T	A	2.118e^-4	0.96	INTRON jp
X	13691998	X_13691998_SNP [dm3] X_13797965_SNP [dm6]	G	A	2.118e^-4	0.96	UPSTREAM CG10996 INTRON inaE
3L	19209665	3L_19209665_SNP [dm3] 3L_19216565_SNP [dm6]	T	A	2.125e^-4	0.96	INTRON fz2
2L	9954508	2L_9954508_SNP [dm3] 2L_9954508_SNP [dm6]	A	G	2.129e^-4	0.96	UTR_5_PRIME CG4709 UPSTREAM CG13126	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	5247847	3L_5247847_SNP [dm3] 3L_5254747_SNP [dm6]	A	G	2.130e^-4	0.96	INTRON shep
3L	4183172	3L_4183172_SNP [dm3] 3L_4183172_SNP [dm6]	A	G	2.131e^-4	0.96	INTRON CG18675 & 2 others	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9546262	3L_9546262_SNP [dm3] 3L_9553162_SNP [dm6]	G	A	2.135e^-4	0.96	UTR_5_PRIME CG42673
X	13825347	X_13825347_SNP [dm3] X_13931314_SNP [dm6]	A	G	2.146e^-4	0.96	INTRON mamo
3R	22456705	3R_22456705_SNP [dm3] 3R_26630983_SNP [dm6]	T	C	2.151e^-4	0.96	UPSTREAM TwdlN DOWNSTREAM TwdlJ INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
2L	5811934	2L_5811934_SNP [dm3] 2L_5811934_SNP [dm6]	G	A	2.152e^-4	0.96	DOWNSTREAM CG43307 INTERGENIC
3R	19950887	3R_19950887_SNP [dm3] 3R_24125165_SNP [dm6]	A	G	2.158e^-4	0.96	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18319013	3L_18319013_SNP [dm3] 3L_18325913_SNP [dm6]	T	A	2.159e^-4	0.96	INTERGENIC
3L	16033351	3L_16033351_SNP [dm3] 3L_16040251_SNP [dm6]	C	A	2.170e^-4	0.96	INTRON th	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	16217116	X_16217116_SNP [dm3] X_16323083_SNP [dm6]	A	T	2.176e^-4	0.96	UTR_5_PRIME CG9917 UPSTREAM CG32579	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	20092136	3R_20092136_SNP [dm3] 3R_24266414_SNP [dm6]	G	T	2.179e^-4	0.96	INTRON jar
X	10397063	X_10397063_SNP [dm3] X_10503030_SNP [dm6]	A	C	2.180e^-4	0.96	INTRON spri
3L	8415663	3L_8415663_SNP [dm3] 3L_8422563_SNP [dm6]	T	A	2.184e^-4	0.96	UPSTREAM CG32354 INTERGENIC
2R	15385822	2R_15385822_SNP [dm3] 2R_19498317_SNP [dm6]	G	T	2.199e^-4	0.96	SYNONYMOUS_CODING CG15120	TF binding site mE1_TFBS_cad
2L	2019962	2L_2019962_SNP [dm3] 2L_2019962_SNP [dm6]	G	A	2.201e^-4	0.96	INTRON CG4238
3R	15918820	3R_15918820_SNP [dm3] 3R_20093098_SNP [dm6]	A	G	2.204e^-4	0.96	INTERGENIC
3R	3227299	3R_3227299_SNP [dm3] 3R_7401577_SNP [dm6]	C	A	2.208e^-4	0.96	INTERGENIC
3R	3890843	3R_3890843_SNP [dm3] 3R_8065121_SNP [dm6]	A	G	2.215e^-4	0.96	INTRON mAChR-B
2L	9612730	2L_9612730_SNP [dm3] 2L_9612730_SNP [dm6]	G	C	2.215e^-4	0.96	UPSTREAM Trx-2 DOWNSTREAM gcm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9612755	2L_9612755_DEL [dm3] 2L_9612755_DEL [dm6]	GCG	G	2.218e^-4	0.96	UPSTREAM Trx-2 DOWNSTREAM gcm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
X	12718503	X_12718503_INS [dm3] X_12824470_INS [dm6]	A	AA	2.230e^-4	0.96	INTRON Pde9
2R	7495795	2R_7495795_SNP [dm3] 2R_11608290_SNP [dm6]	A	G	2.234e^-4	0.96	INTRON tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15390209	2R_15390209_SNP [dm3] 2R_19502704_SNP [dm6]	T	A	2.240e^-4	0.96	UPSTREAM CG11007 INTERGENIC
3R	25755128	3R_25755128_SNP [dm3] 3R_29929406_SNP [dm6]	C	A	2.246e^-4	0.96	NON_SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522
3R	25755535	3R_25755535_SNP [dm3] 3R_29929813_SNP [dm6]	G	T	2.246e^-4	0.96	NON_SYNONYMOUS_CODING CG31202 DOWNSTREAM Cog7
3R	25755596	3R_25755596_SNP [dm3] 3R_29929874_SNP [dm6]	T	G	2.246e^-4	0.96	SYNONYMOUS_CODING CG31202 DOWNSTREAM Cog7
2L	6307606	2L_6307606_SNP [dm3] 2L_6307606_SNP [dm6]	A	T	2.251e^-4	0.96	DOWNSTREAM CG43922 INTRON Ddr
3L	12897596	3L_12897596_SNP [dm3] 3L_12904496_SNP [dm6]	G	T	2.260e^-4	0.96	UPSTREAM CG32117 INTERGENIC
3L	10755447	3L_10755447_SNP [dm3] 3L_10762347_SNP [dm6]	A	C	2.264e^-4	0.96	INTERGENIC
3R	15920020	3R_15920020_SNP [dm3] 3R_20094298_SNP [dm6]	A	G	2.275e^-4	0.96	INTERGENIC
X	11116735	X_11116735_SNP [dm3] X_11222702_SNP [dm6]	A	T	2.279e^-4	0.96	UTR_3_PRIME CG44422 INTRON CG44422
X	8730542	X_8730542_SNP [dm3] X_8836509_SNP [dm6]	T	C	2.282e^-4	0.96	EXON CR45537
2R	3766173	2R_3766173_SNP [dm3] 2R_7878668_SNP [dm6]	G	A	2.283e^-4	0.96	INTRON Dgk
2L	12840597	2L_12840597_SNP [dm3] 2L_12840597_SNP [dm6]	C	A	2.285e^-4	0.96	UPSTREAM CR44970 & 1 other INTERGENIC
2L	12840609	2L_12840609_SNP [dm3] 2L_12840609_SNP [dm6]	C	T	2.285e^-4	0.96	UPSTREAM CR44970 & 1 other INTERGENIC
2L	12840619	2L_12840619_SNP [dm3] 2L_12840619_SNP [dm6]	C	T	2.285e^-4	0.96	UPSTREAM CR44970 & 1 other INTERGENIC
X	4616965	X_4616965_SNP [dm3] X_4722932_SNP [dm6]	C	A	2.286e^-4	0.96	INTRON Proc-R
X	10928256	X_10928256_SNP [dm3] X_11034223_SNP [dm6]	A	T	2.297e^-4	0.96	INTRON CG42339
3L	19218492	3L_19218492_SNP [dm3] 3L_19225392_SNP [dm6]	T	C	2.300e^-4	0.96	INTRON fz2
3L	5243515	3L_5243515_DEL [dm3] 3L_5250415_DEL [dm6]	GGC	T	2.300e^-4	0.96	INTRON shep
X	4006415	X_4006415_SNP [dm3] X_4112382_SNP [dm6]	T	C	2.307e^-4	0.96	SYNONYMOUS_CODING Nsun2	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	13939158	3L_13939158_SNP [dm3] 3L_13946058_SNP [dm6]	A	G	2.309e^-4	0.96	INTRON CG32137
3L	18319041	3L_18319041_SNP [dm3] 3L_18325941_SNP [dm6]	C	T	2.310e^-4	0.96	INTERGENIC
X	19257004	X_19257004_SNP [dm3] X_19362971_SNP [dm6]	T	C	2.319e^-4	0.96	UTR_5_PRIME kek5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8415684	3L_8415684_SNP [dm3] 3L_8422584_SNP [dm6]	G	A	2.323e^-4	0.96	UPSTREAM CG32354 INTERGENIC
3R	3866557	3R_3866557_SNP [dm3] 3R_8040835_SNP [dm6]	G	A	2.330e^-4	0.96	UPSTREAM CG43060 INTERGENIC
2R	15798156	2R_15798156_SNP [dm3] 2R_19910651_SNP [dm6]	C	T	2.332e^-4	0.96	EXON CR44573
X	10110228	X_10110228_INS [dm3] X_10216195_INS [dm6]	A	AAATA	2.333e^-4	0.96	UTR_3_PRIME l_1_G0230 INTRON CG2962
3R	20377084	3R_20377084_SNP [dm3] 3R_24551362_SNP [dm6]	C	T	2.334e^-4	0.96	SYNONYMOUS_CODING Esyt2 UTR_5_PRIME Esyt2	TF binding site mE1_TFBS_cad
X	4006130	X_4006130_SNP [dm3] X_4112097_SNP [dm6]	C	G	2.336e^-4	0.96	SYNONYMOUS_CODING Nsun2	TF binding site mE1_TFBS_sens
X	4439387	X_4439387_SNP [dm3] X_4545354_SNP [dm6]	A	G	2.343e^-4	0.96	UTR_3_PRIME Usf DOWNSTREAM CG3568 INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6098319	2R_6098319_SNP [dm3] 2R_10210814_SNP [dm6]	A	G	2.351e^-4	0.96	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	19221238	3L_19221238_SNP [dm3] 3L_19228138_SNP [dm6]	C	G	2.352e^-4	0.96	UPSTREAM CR43893 INTRON fz2
2R	16634214	2R_16634214_SNP [dm3] 2R_20746709_SNP [dm6]	T	A	2.355e^-4	0.96	INTRON dpr
X	20338618	X_20338618_SNP [dm3] X_20467591_SNP [dm6]	A	C	2.357e^-4	0.96	UTR_5_PRIME GstT3 UPSTREAM GstT3 DOWNSTREAM CG32506
2L	7913124	2L_7913124_DEL [dm3] 2L_7913124_DEL [dm6]	TAAACT	T	2.359e^-4	0.96	INTRON Snoo
3L	12816254	3L_12816254_SNP [dm3] 3L_12823154_SNP [dm6]	C	T	2.362e^-4	0.96	SYNONYMOUS_CODING CG42588
3R	23007813	3R_23007813_SNP [dm3] 3R_27182091_SNP [dm6]	C	G	2.373e^-4	0.96	INTRON Ser
2R	16460372	2R_16460372_SNP [dm3] 2R_20572867_SNP [dm6]	A	T	2.391e^-4	0.96	INTRON qsm
2L	12849200	2L_12849200_SNP [dm3] 2L_12849200_SNP [dm6]	T	C	2.391e^-4	0.96	INTERGENIC
3R	26935425	3R_26935425_DEL [dm3] 3R_31109703_DEL [dm6]	TGAAATGT	T	2.392e^-4	0.96	UPSTREAM CG11318 INTERGENIC
2L	7317404	2L_7317404_SNP [dm3] 2L_7317404_SNP [dm6]	A	C	2.409e^-4	0.96	INTERGENIC
2L	5484984	2L_5484984_SNP [dm3] 2L_5484984_SNP [dm6]	G	T	2.410e^-4	0.96	INTERGENIC
3R	20399235	3R_20399235_SNP [dm3] 3R_24573513_SNP [dm6]	T	A	2.410e^-4	0.96	INTRON CG13624	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5328558	2L_5328558_SNP [dm3] 2L_5328558_SNP [dm6]	A	T	2.412e^-4	0.96	DOWNSTREAM cype INTRON CG14022
3L	4956973	3L_4956973_SNP [dm3] 3L_4956973_SNP [dm6]	T	A	2.413e^-4	0.96	INTRON Con
3L	10640514	3L_10640514_SNP [dm3] 3L_10647414_SNP [dm6]	C	T	2.417e^-4	0.96	INTRON CG32066
2L	1029362	2L_1029362_SNP [dm3] 2L_1029362_SNP [dm6]	A	G	2.425e^-4	0.96	INTRON IA-2
3L	4448770	3L_4448770_SNP [dm3] 3L_4448770_SNP [dm6]	G	A	2.431e^-4	0.96	DOWNSTREAM CG12607 INTERGENIC
X	10873339	X_10873339_SNP [dm3] X_10979306_SNP [dm6]	G	A	2.431e^-4	0.96	INTRON CG42339
3L	4712244	3L_4712244_SNP [dm3] 3L_4712244_SNP [dm6]	A	T	2.440e^-4	0.96	INTRON RhoGEF64C
3L	8569666	3L_8569666_SNP [dm3] 3L_8576566_SNP [dm6]	T	G	2.442e^-4	0.96	UPSTREAM CG43078 & 1 other INTERGENIC
3R	21364582	3R_21364582_SNP [dm3] 3R_25538860_SNP [dm6]	G	A	2.443e^-4	0.96	INTRON msi
3L	7874291	3L_7874291_SNP [dm3] 3L_7881191_SNP [dm6]	A	T	2.446e^-4	0.96	INTRON CG32365
2R	7324459	2R_7324459_SNP [dm3] 2R_11436954_SNP [dm6]	A	G	2.451e^-4	0.96	INTRON CG7777
2L	8662061	2L_8662061_SNP [dm3] 2L_8662061_SNP [dm6]	A	C	2.452e^-4	0.96	INTRON Sema-1a
3L	772171	3L_772171_SNP [dm3] 3L_772171_SNP [dm6]	G	A	2.453e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_sens
X	10873554	X_10873554_SNP [dm3] X_10979521_SNP [dm6]	A	G	2.454e^-4	0.96	INTRON CG42339
3L	9306026	3L_9306026_SNP [dm3] 3L_9312926_SNP [dm6]	C	T	2.455e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4005884	X_4005884_SNP [dm3] X_4111851_SNP [dm6]	T	A	2.457e^-4	0.96	SYNONYMOUS_CODING Nsun2 DOWNSTREAM cib	TF binding site mE1_TFBS_sens
3L	4956926	3L_4956926_SNP [dm3] 3L_4956926_SNP [dm6]	G	A	2.462e^-4	0.96	INTRON Con
2L	4895776	2L_4895776_SNP [dm3] 2L_4895776_SNP [dm6]	A	G	2.462e^-4	0.96	INTRON CG3036
3R	20396800	3R_20396800_SNP [dm3] 3R_24571078_SNP [dm6]	T	G	2.464e^-4	0.96	INTRON CG13624
X	16224460	X_16224460_SNP [dm3] X_16330427_SNP [dm6]	A	T	2.464e^-4	0.96	DOWNSTREAM CG9921 INTRON CG9919	TF binding site BDTNP1_TFBS_dl
3L	10636238	3L_10636238_SNP [dm3] 3L_10643138_SNP [dm6]	C	T	2.470e^-4	0.96	UPSTREAM CG14153 DOWNSTREAM CG14154 INTRON CG32066
3L	2613200	3L_2613200_SNP [dm3] 3L_2613200_SNP [dm6]	T	A	2.484e^-4	0.96	INTRON Pxn
3L	14830790	3L_14830790_SNP [dm3] 3L_14837690_SNP [dm6]	G	A	2.484e^-4	0.96	INTRON CG17839
2R	9357681	2R_9357681_SNP [dm3] 2R_13470176_SNP [dm6]	G	A	2.485e^-4	0.96	INTRON arr
2L	13924341	2L_13924341_SNP [dm3] 2L_13924341_SNP [dm6]	A	G	2.501e^-4	0.96	UPSTREAM CG16886 INTRON Ance-3
3L	6022995	3L_6022995_SNP [dm3] 3L_6029895_SNP [dm6]	A	C	2.505e^-4	0.96	INTERGENIC
2L	12123437	2L_12123437_SNP [dm3] 2L_12123437_SNP [dm6]	A	G	2.514e^-4	0.96	INTRON CG17211
2L	7912958	2L_7912958_SNP [dm3] 2L_7912958_SNP [dm6]	A	G	2.517e^-4	0.96	INTRON Snoo
2R	6098310	2R_6098310_SNP [dm3] 2R_10210805_SNP [dm6]	C	G	2.520e^-4	0.96	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	13187442	3R_13187442_SNP [dm3] 3R_17361720_SNP [dm6]	G	C	2.524e^-4	0.96	INTRON beat-IIa
2L	15895742	2L_15895742_SNP [dm3] 2L_15895742_SNP [dm6]	T	C	2.524e^-4	0.96	INTRON CG31735
X	19223170	X_19223170_SNP [dm3] X_19329137_SNP [dm6]	A	G	2.530e^-4	0.96	UTR_3_PRIME nAChRalpha7
3L	6944763	3L_6944763_SNP [dm3] 3L_6951663_SNP [dm6]	T	A	2.542e^-4	0.96	DOWNSTREAM CG10077 INTRON CG10077
3L	18319050	3L_18319050_SNP [dm3] 3L_18325950_SNP [dm6]	C	A	2.543e^-4	0.96	INTERGENIC
2L	9232105	2L_9232105_SNP [dm3] 2L_9232105_SNP [dm6]	C	T	2.548e^-4	0.96	INTRON tai
2R	10961742	2R_10961742_DEL [dm3] 2R_15074237_DEL [dm6]	CGTTT	C	2.560e^-4	0.96	INTERGENIC
3L	4198541	3L_4198541_SNP [dm3] 3L_4198541_SNP [dm6]	G	T	2.561e^-4	0.96	SYNONYMOUS_CODING CG43367
3R	20092130	3R_20092130_SNP [dm3] 3R_24266408_SNP [dm6]	A	T	2.576e^-4	0.96	INTRON jar
2R	16501436	2R_16501436_DEL [dm3] 2R_20613931_DEL [dm6]	TTTGCAGTGC	T	2.581e^-4	0.96	INTRON Hil	TF binding site BDTNP1_TFBS_dl
X	10110220	X_10110220_SNP [dm3] X_10216187_SNP [dm6]	T	G	2.591e^-4	0.96	UTR_3_PRIME l_1_G0230 INTRON CG2962
2L	13865297	2L_13865297_SNP [dm3] 2L_13865297_SNP [dm6]	T	A	2.593e^-4	0.96	DOWNSTREAM CR44848 INTRON CenG1A
3L	13018073	3L_13018073_SNP [dm3] 3L_13024973_SNP [dm6]	C	T	2.600e^-4	0.96	SYNONYMOUS_CODING Zmynd10 DOWNSTREAM snoRNA:Me28S-A774a & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4469609	2L_4469609_SNP [dm3] 2L_4469609_SNP [dm6]	G	A	2.603e^-4	0.96	SYNONYMOUS_CODING ine	TF binding site mE1_TFBS_cad
2L	12840620	2L_12840620_SNP [dm3] 2L_12840620_SNP [dm6]	C	T	2.604e^-4	0.96	UPSTREAM CR44970 & 1 other INTERGENIC
3L	4712192	3L_4712192_SNP [dm3] 3L_4712192_SNP [dm6]	A	T	2.607e^-4	0.96	INTRON RhoGEF64C
3L	14826617	3L_14826617_SNP [dm3] 3L_14833517_SNP [dm6]	G	A	2.614e^-4	0.96	INTRON CG17839
3L	6022912	3L_6022912_SNP [dm3] 3L_6029812_SNP [dm6]	C	T	2.615e^-4	0.96	INTERGENIC
3R	3641606	3R_3641606_INS [dm3] 3R_7815884_INS [dm6]	T	TC	2.620e^-4	0.96	INTRON CG34384
2R	18969576	2R_18969576_SNP [dm3] 2R_23082053_SNP [dm6]	T	A	2.623e^-4	0.96	UPSTREAM Gr59b DOWNSTREAM Gr59a INTERGENIC	regulatory region REDfly_CRMs
2L	3078918	2L_3078918_SNP [dm3] 2L_3078918_SNP [dm6]	G	C	2.626e^-4	0.96	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	5243312	3L_5243312_SNP [dm3] 3L_5250212_SNP [dm6]	A	G	2.630e^-4	0.96	INTRON shep
X	17007678	X_17007678_SNP [dm3] X_17113645_SNP [dm6]	G	C	2.632e^-4	0.96	INTRON CG5004
2R	10949689	2R_10949689_SNP [dm3] 2R_15062184_SNP [dm6]	T	C	2.633e^-4	0.96	INTERGENIC
3L	11131275	3L_11131275_SNP [dm3] 3L_11138175_SNP [dm6]	T	C	2.640e^-4	0.96	INTRON CG32082
3L	10509586	3L_10509586_SNP [dm3] 3L_10516486_SNP [dm6]	G	A	2.643e^-4	0.96	INTRON A2bp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	17282615	X_17282615_SNP [dm3] X_17388582_SNP [dm6]	A	T	2.647e^-4	0.96	INTERGENIC
2R	10949719	2R_10949719_SNP [dm3] 2R_15062214_SNP [dm6]	T	A	2.654e^-4	0.96	INTERGENIC
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	2.654e^-4	0.96	UPSTREAM CG11737 INTERGENIC
2R	10407397	2R_10407397_SNP [dm3] 2R_14519892_SNP [dm6]	A	T	2.659e^-4	0.96	INTERGENIC
3R	3891523	3R_3891523_INS [dm3] 3R_8065801_INS [dm6]	C	CC	2.661e^-4	0.96	INTRON mAChR-B
X	10110222	X_10110222_SNP [dm3] X_10216189_SNP [dm6]	T	C	2.664e^-4	0.96	UTR_3_PRIME l_1_G0230 INTRON CG2962
3L	2345320	3L_2345320_SNP [dm3] 3L_2345320_SNP [dm6]	A	T	2.667e^-4	0.96	UTR_3_PRIME MsR1
3R	4678668	3R_4678668_SNP [dm3] 3R_8852946_SNP [dm6]	C	T	2.669e^-4	0.96	INTRON pyd
3L	4186050	3L_4186050_SNP [dm3] 3L_4186050_SNP [dm6]	G	A	2.672e^-4	0.96	UTR_3_PRIME VhaM9.7-c INTRON CG18675 & 1 other
3R	14695430	3R_14695430_SNP [dm3] 3R_18869708_SNP [dm6]	A	G	2.676e^-4	0.96	INTERGENIC
3R	14695437	3R_14695437_SNP [dm3] 3R_18869715_SNP [dm6]	A	G	2.676e^-4	0.96	INTERGENIC
3L	7549602	3L_7549602_SNP [dm3] 3L_7556502_SNP [dm6]	G	A	2.684e^-4	0.96	NON_SYNONYMOUS_CODING CG14837	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10949174	2R_10949174_SNP [dm3] 2R_15061669_SNP [dm6]	G	A	2.691e^-4	0.96	INTERGENIC
2R	16473908	2R_16473908_SNP [dm3] 2R_20586403_SNP [dm6]	T	A	2.695e^-4	0.96	NON_SYNONYMOUS_CODING Nnf1a UPSTREAM mir-992	TF binding site BDTNP1_TFBS_dl
3L	527860	3L_527860_SNP [dm3] 3L_527860_SNP [dm6]	T	A	2.728e^-4	0.96	UPSTREAM CG34269 DOWNSTREAM CR45118 INTRON klar EXON CR45117
3R	3822419	3R_3822419_INS [dm3] 3R_7996697_INS [dm6]	A	TTG	2.729e^-4	0.96	UPSTREAM CG2781 INTERGENIC
2L	518814	2L_518814_SNP [dm3] 2L_518814_SNP [dm6]	C	A	2.731e^-4	0.96	INTRON ush	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2L	8661897	2L_8661897_SNP [dm3] 2L_8661897_SNP [dm6]	G	A	2.734e^-4	0.96	INTRON Sema-1a
2L	7317284	2L_7317284_SNP [dm3] 2L_7317284_SNP [dm6]	T	A	2.737e^-4	0.96	INTERGENIC
3L	2166724	3L_2166724_SNP [dm3] 3L_2166724_SNP [dm6]	G	A	2.750e^-4	0.96	DOWNSTREAM CG15879 INTERGENIC
2L	9635848	2L_9635848_SNP [dm3] 2L_9635848_SNP [dm6]	T	C	2.766e^-4	0.96	INTRON Apoltp
2R	7139464	2R_7139464_SNP [dm3] 2R_11251959_SNP [dm6]	A	C	2.777e^-4	0.96	UTR_3_PRIME Cpr47Ea DOWNSTREAM Or47a	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14424962	2R_14424962_SNP [dm3] 2R_18537457_SNP [dm6]	T	C	2.781e^-4	0.96	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6403380	X_6403380_SNP [dm3] X_6509347_SNP [dm6]	T	C	2.786e^-4	0.96	INTRON CG42340
X	2654983	X_2654983_SNP [dm3] X_2760950_SNP [dm6]	C	A	2.794e^-4	0.96	INTRON kirre
3L	9376003	3L_9376003_SNP [dm3] 3L_9382903_SNP [dm6]	G	A	2.801e^-4	0.96	DOWNSTREAM Hsp23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3611322	3L_3611322_SNP [dm3] 3L_3611322_SNP [dm6]	C	G	2.807e^-4	0.96	UPSTREAM CG10359 DOWNSTREAM Eip63E INTERGENIC
3L	674339	3L_674339_SNP [dm3] 3L_674339_SNP [dm6]	A	T	2.825e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	10548581	2L_10548581_SNP [dm3] 2L_10548581_SNP [dm6]	C	G	2.832e^-4	0.96	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4203961	3L_4203961_SNP [dm3] 3L_4203961_SNP [dm6]	A	T	2.832e^-4	0.96	INTRON CG43367 & 1 other
3R	4671659	3R_4671659_SNP [dm3] 3R_8845937_SNP [dm6]	T	C	2.843e^-4	0.96	UTR_5_PRIME pyd INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3R	7104012	3R_7104012_SNP [dm3] 3R_11278290_SNP [dm6]	C	A	2.847e^-4	0.96	INTRON CR31386
3L	4956955	3L_4956955_SNP [dm3] 3L_4956955_SNP [dm6]	C	T	2.849e^-4	0.96	INTRON Con
3R	3890858	3R_3890858_SNP [dm3] 3R_8065136_SNP [dm6]	C	A	2.852e^-4	0.96	INTRON mAChR-B
2L	12471509	2L_12471509_SNP [dm3] 2L_12471509_SNP [dm6]	T	A	2.852e^-4	0.96	INTRON bun
3L	3639598	3L_3639598_SNP [dm3] 3L_3639598_SNP [dm6]	C	T	2.854e^-4	0.96	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	746116	3L_746116_SNP [dm3] 3L_746116_SNP [dm6]	T	C	2.865e^-4	0.96	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19209662	3L_19209662_SNP [dm3] 3L_19216562_SNP [dm6]	C	A	2.865e^-4	0.96	INTRON fz2
3R	9863498	3R_9863498_SNP [dm3] 3R_14037776_SNP [dm6]	G	A	2.876e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5240903	3L_5240903_SNP [dm3] 3L_5247803_SNP [dm6]	A	T	2.880e^-4	0.96	UTR_5_PRIME shep INTRON shep
X	14863753	X_14863753_SNP [dm3] X_14969720_SNP [dm6]	G	A	2.883e^-4	0.96	INTRON eag
2L	13726409	2L_13726409_SNP [dm3] 2L_13726409_SNP [dm6]	G	C	2.889e^-4	0.96	INTERGENIC
2R	16652864	2R_16652864_SNP [dm3] 2R_20765359_SNP [dm6]	G	T	2.890e^-4	0.96	INTERGENIC
3R	21364619	3R_21364619_SNP [dm3] 3R_25538897_SNP [dm6]	C	A	2.893e^-4	0.96	INTRON msi
X	5237405	X_5237405_SNP [dm3] X_5343372_SNP [dm6]	G	A	2.893e^-4	0.96	INTRON SK
2L	12552283	2L_12552283_SNP [dm3] 2L_12552283_SNP [dm6]	A	G	2.897e^-4	0.96	INTERGENIC
3R	15323907	3R_15323907_SNP [dm3] 3R_19498185_SNP [dm6]	T	C	2.905e^-4	0.96	INTRON Dys	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	18050219	X_18050219_SNP [dm3] X_18156186_SNP [dm6]	A	T	2.906e^-4	0.96	INTRON Frq1
2R	10528310	2R_10528310_SNP [dm3] 2R_14640805_SNP [dm6]	T	C	2.908e^-4	0.96	UPSTREAM CG12862 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11468639	3L_11468639_SNP [dm3] 3L_11475539_SNP [dm6]	A	G	2.908e^-4	0.96	UTR_3_PRIME Vha16-2
3L	9973122	3L_9973122_SNP [dm3] 3L_9980022_SNP [dm6]	C	A	2.910e^-4	0.96	INTRON dpr6
3R	21364577	3R_21364577_SNP [dm3] 3R_25538855_SNP [dm6]	T	C	2.912e^-4	0.96	INTRON msi
X	5406745	X_5406745_SNP [dm3] X_5512712_SNP [dm6]	T	C	2.913e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18319003	3L_18319003_SNP [dm3] 3L_18325903_SNP [dm6]	T	A	2.914e^-4	0.96	INTERGENIC
3R	14199681	3R_14199681_SNP [dm3] 3R_18373959_SNP [dm6]	C	A	2.922e^-4	0.96	UPSTREAM CR44946 DOWNSTREAM CG14310 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26984587	3R_26984587_SNP [dm3] 3R_31158865_SNP [dm6]	T	G	2.924e^-4	0.96	INTRON Gycbeta100B & 1 other	TF binding site mE1_TFBS_chinmo
X	2820562	X_2820562_SNP [dm3] X_2926529_SNP [dm6]	T	A	2.925e^-4	0.96	SYNONYMOUS_CODING CG14424 INTRON kirre	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	19218498	3L_19218498_SNP [dm3] 3L_19225398_SNP [dm6]	T	C	2.926e^-4	0.96	INTRON fz2
X	4005631	X_4005631_SNP [dm3] X_4111598_SNP [dm6]	T	C	2.938e^-4	0.96	DOWNSTREAM cib INTRON Nsun2	TF binding site mE1_TFBS_sens
X	14859383	X_14859383_SNP [dm3] X_14965350_SNP [dm6]	A	G	2.938e^-4	0.96	INTRON eag
X	20975711	X_20975711_SNP [dm3] X_21104684_SNP [dm6]	A	T	2.938e^-4	0.96	DOWNSTREAM CG1503 INTRON stg1 & 1 other
3L	9879378	3L_9879378_SNP [dm3] 3L_9886278_SNP [dm6]	A	G	2.943e^-4	0.96	SYNONYMOUS_CODING Taf2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	6568846	2R_6568846_SNP [dm3] 2R_10681341_SNP [dm6]	G	A	2.950e^-4	0.96	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	10528352	3R_10528352_SNP [dm3] 3R_14702630_SNP [dm6]	T	G	2.953e^-4	0.96	INTRON kibra	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	3788428	3L_3788428_SNP [dm3] 3L_3788428_SNP [dm6]	T	A	2.957e^-4	0.96	UPSTREAM CG32264 INTRON CG32264	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3L	7242387	3L_7242387_SNP [dm3] 3L_7249287_SNP [dm6]	T	A	2.959e^-4	0.96	UTR_5_PRIME Cdc27 DOWNSTREAM MED4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	6098314	2R_6098314_SNP [dm3] 2R_10210809_SNP [dm6]	C	G	2.966e^-4	0.96	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	4007670	X_4007670_SNP [dm3] X_4113637_SNP [dm6]	T	C	2.969e^-4	0.96	UTR_5_PRIME Nsun2 UPSTREAM dgt4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14791035	3L_14791035_SNP [dm3] 3L_14797935_SNP [dm6]	G	T	2.973e^-4	0.96	SYNONYMOUS_CODING CG9425	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1059205	3L_1059205_SNP [dm3] 3L_1059205_SNP [dm6]	T	C	2.976e^-4	0.96	INTRON bab1
X	16127611	X_16127611_INS [dm3] X_16233578_INS [dm6]	A	AAACTAAATA	2.986e^-4	0.96	INTERGENIC
X	13019266	X_13019266_SNP [dm3] X_13125233_SNP [dm6]	T	C	2.987e^-4	0.96	INTRON CG32638
X	12286127	X_12286127_DEL [dm3] X_12392094_DEL [dm6]	AC	A	2.989e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17007310	X_17007310_SNP [dm3] X_17113277_SNP [dm6]	T	C	2.993e^-4	0.96	INTRON CG5004
3L	6022980	3L_6022980_SNP [dm3] 3L_6029880_SNP [dm6]	A	C	2.997e^-4	0.96	INTERGENIC
2R	9010232	2R_9010232_SNP [dm3] 2R_13122727_SNP [dm6]	T	G	3.018e^-4	0.96	UPSTREAM CG13325 INTRON CG13325
3L	742294	3L_742294_SNP [dm3] 3L_742294_SNP [dm6]	C	T	3.021e^-4	0.96	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4478752	3L_4478752_SNP [dm3] 3L_4478752_SNP [dm6]	A	G	3.027e^-4	0.96	INTERGENIC
3R	3811116	3R_3811116_SNP [dm3] 3R_7985394_SNP [dm6]	T	A	3.037e^-4	0.96	INTRON CG2781
3R	3853139	3R_3853139_SNP [dm3] 3R_8027417_SNP [dm6]	G	A	3.056e^-4	0.96	UPSTREAM CG2747 INTRON CG2747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14783366	2R_14783366_SNP [dm3] 2R_18895861_SNP [dm6]	C	A	3.070e^-4	0.96	INTRON sano
3R	26616679	3R_26616679_DEL [dm3] 3R_30790957_DEL [dm6]	ACATGGAGAGCA...	A	3.071e^-4	0.96	UTR_3_PRIME wts DOWNSTREAM mir-1013
2L	3674745	2L_3674745_SNP [dm3] 2L_3674745_SNP [dm6]	T	C	3.073e^-4	0.96	INTRON CG34340
X	19006456	X_19006456_SNP [dm3] X_19112423_SNP [dm6]	G	A	3.073e^-4	0.96	INTERGENIC
3L	14830628	3L_14830628_SNP [dm3] 3L_14837528_SNP [dm6]	A	G	3.077e^-4	0.96	INTRON CG17839
3L	9515714	3L_9515714_INS [dm3] 3L_9522614_INS [dm6]	G	TTT	3.084e^-4	0.96	INTRON CG33700
X	7636081	X_7636081_INS [dm3] X_7742048_INS [dm6]	C	AAAGTAACAACA...	3.088e^-4	0.96	INTERGENIC
3L	21992248	3L_21992248_SNP [dm3] 3L_21999148_SNP [dm6]	C	G	3.090e^-4	0.96	INTERGENIC
2L	5240221	2L_5240221_SNP [dm3] 2L_5240221_SNP [dm6]	C	A	3.097e^-4	0.96	UPSTREAM tRNA:CR31971 DOWNSTREAM tRNA:CR31914 INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7319564	2R_7319564_SNP [dm3] 2R_11432059_SNP [dm6]	A	G	3.104e^-4	0.96	DOWNSTREAM CR43771 INTERGENIC
2L	14328251	2L_14328251_SNP [dm3] 2L_14328251_SNP [dm6]	A	T	3.118e^-4	0.96	UTR_3_PRIME wb UPSTREAM ms_2_34Fe
3R	19950710	3R_19950710_SNP [dm3] 3R_24124988_SNP [dm6]	G	C	3.120e^-4	0.96	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3149748	X_3149748_SNP [dm3] X_3255715_SNP [dm6]	T	A	3.122e^-4	0.96	UPSTREAM dnc INTRON dnc
2L	8662064	2L_8662064_SNP [dm3] 2L_8662064_SNP [dm6]	C	T	3.123e^-4	0.96	INTRON Sema-1a
2R	17616321	2R_17616321_SNP [dm3] 2R_21728816_SNP [dm6]	C	T	3.130e^-4	0.96	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad
X	10110235	X_10110235_SNP [dm3] X_10216202_SNP [dm6]	A	G	3.136e^-4	0.96	UTR_3_PRIME l_1_G0230 INTRON CG2962
2L	10066281	2L_10066281_SNP [dm3] 2L_10066281_SNP [dm6]	G	T	3.145e^-4	0.96	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10066287	2L_10066287_SNP [dm3] 2L_10066287_SNP [dm6]	G	A	3.145e^-4	0.96	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16775716	2R_16775716_SNP [dm3] 2R_20888211_SNP [dm6]	C	G	3.147e^-4	0.96	INTRON otp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15411404	2L_15411404_SNP [dm3] 2L_15411404_SNP [dm6]	T	C	3.151e^-4	0.96	INTERGENIC
2R	13679316	2R_13679316_SNP [dm3] 2R_17791811_SNP [dm6]	G	C	3.160e^-4	0.96	INTRON CG5033	TF binding site mE1_TFBS_sens
3L	11468640	3L_11468640_SNP [dm3] 3L_11475540_SNP [dm6]	T	C	3.161e^-4	0.96	UTR_3_PRIME Vha16-2
X	16127621	X_16127621_SNP [dm3] X_16233588_SNP [dm6]	G	A	3.165e^-4	0.96	INTERGENIC
2L	14296550	2L_14296550_SNP [dm3] 2L_14296550_SNP [dm6]	C	T	3.167e^-4	0.96	INTRON wb
3R	20443905	3R_20443905_SNP [dm3] 3R_24618183_SNP [dm6]	T	C	3.168e^-4	0.96	SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4007327	X_4007327_SNP [dm3] X_4113294_SNP [dm6]	G	A	3.186e^-4	0.96	SYNONYMOUS_CODING Nsun2 UPSTREAM dgt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4183061	3L_4183061_SNP [dm3] 3L_4183061_SNP [dm6]	C	G	3.187e^-4	0.96	INTRON CG18675 & 2 others
3L	4183066	3L_4183066_SNP [dm3] 3L_4183066_SNP [dm6]	G	A	3.187e^-4	0.96	INTRON CG18675 & 2 others
2R	10961689	2R_10961689_SNP [dm3] 2R_15074184_SNP [dm6]	A	G	3.200e^-4	0.96	INTERGENIC
3R	20362378	3R_20362378_SNP [dm3] 3R_24536656_SNP [dm6]	T	A	3.204e^-4	0.96	UTR_3_PRIME CG5789 DOWNSTREAM ana1
2L	9612741	2L_9612741_SNP [dm3] 2L_9612741_SNP [dm6]	T	G	3.219e^-4	0.96	UPSTREAM Trx-2 DOWNSTREAM gcm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16652886	2R_16652886_SNP [dm3] 2R_20765381_SNP [dm6]	A	G	3.220e^-4	0.96	INTERGENIC
3L	18319009	3L_18319009_SNP [dm3] 3L_18325909_SNP [dm6]	A	T	3.221e^-4	0.96	INTERGENIC
2L	14066582	2L_14066582_SNP [dm3] 2L_14066582_SNP [dm6]	G	A	3.225e^-4	0.96	INTRON nAChRalpha5
2L	13340280	2L_13340280_SNP [dm3] 2L_13340280_SNP [dm6]	T	G	3.231e^-4	0.96	INTERGENIC
2L	1979200	2L_1979200_SNP [dm3] 2L_1979200_SNP [dm6]	G	A	3.249e^-4	0.96	SPLICE_SITE_REGION CG15356 SYNONYMOUS_CODING CG15356	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14696476	X_14696476_SNP [dm3] X_14802443_SNP [dm6]	A	C	3.251e^-4	0.96	INTRON rut
X	2667388	X_2667388_SNP [dm3] X_2773355_SNP [dm6]	A	T	3.253e^-4	0.96	INTRON kirre
3L	10755772	3L_10755772_SNP [dm3] 3L_10762672_SNP [dm6]	C	A	3.259e^-4	0.96	INTERGENIC
2L	604683	2L_604683_SNP [dm3] 2L_604683_SNP [dm6]	C	T	3.261e^-4	0.96	DOWNSTREAM CG13689 INTERGENIC
2R	13529942	2R_13529942_SNP [dm3] 2R_17642437_SNP [dm6]	C	G	3.262e^-4	0.96	INTERGENIC
2L	3490294	2L_3490294_SNP [dm3] 2L_3490294_SNP [dm6]	C	A	3.263e^-4	0.96	INTRON CG15414
3L	9729235	3L_9729235_SNP [dm3] 3L_9736135_SNP [dm6]	T	A	3.270e^-4	0.96	INTRON CG42268
X	12186708	X_12186708_SNP [dm3] X_12292675_SNP [dm6]	A	C	3.272e^-4	0.96	INTRON Ten-a
2L	2019963	2L_2019963_SNP [dm3] 2L_2019963_SNP [dm6]	A	C	3.287e^-4	0.96	INTRON CG4238
2L	5528426	2L_5528426_SNP [dm3] 2L_5528426_SNP [dm6]	A	C	3.288e^-4	0.96	SYNONYMOUS_CODING CG31915 DOWNSTREAM CG31648 INTRON Cap-D3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1892852	2L_1892852_SNP [dm3] 2L_1892852_SNP [dm6]	A	T	3.290e^-4	0.96	INTRON CG7337
3R	7439834	3R_7439834_SNP [dm3] 3R_11614112_SNP [dm6]	A	G	3.298e^-4	0.96	INTRON Jupiter	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	6098321	2R_6098321_SNP [dm3] 2R_10210816_SNP [dm6]	A	T	3.302e^-4	0.96	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	6098346	2R_6098346_SNP [dm3] 2R_10210841_SNP [dm6]	A	C	3.302e^-4	0.96	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	10072987	2L_10072987_SNP [dm3] 2L_10072987_SNP [dm6]	A	G	3.304e^-4	0.96	INTRON CG44153	TF binding site mE1_TFBS_inv
2L	8696097	2L_8696097_SNP [dm3] 2L_8696097_SNP [dm6]	T	A	3.309e^-4	0.96	INTRON Hnf4
3L	17248651	3L_17248651_SNP [dm3] 3L_17255551_SNP [dm6]	A	T	3.312e^-4	0.96	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19203381	3L_19203381_DEL [dm3] 3L_19210281_DEL [dm6]	TT	T	3.316e^-4	0.96	INTRON fz2
2R	6560183	2R_6560183_SNP [dm3] 2R_10672678_SNP [dm6]	G	A	3.318e^-4	0.96	UPSTREAM stan INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10807704	3R_10807704_SNP [dm3] 3R_14981982_SNP [dm6]	G	C	3.318e^-4	0.96	INTERGENIC
X	17007274	X_17007274_SNP [dm3] X_17113241_SNP [dm6]	C	G	3.321e^-4	0.96	INTRON CG5004
3R	20331821	3R_20331821_SNP [dm3] 3R_24506099_SNP [dm6]	T	C	3.322e^-4	0.96	INTERGENIC
2L	12634751	2L_12634751_SNP [dm3] 2L_12634751_SNP [dm6]	G	A	3.322e^-4	0.96	INTRON Ref2
2L	12634769	2L_12634769_SNP [dm3] 2L_12634769_SNP [dm6]	G	A	3.322e^-4	0.96	INTRON Ref2
2L	12634773	2L_12634773_SNP [dm3] 2L_12634773_SNP [dm6]	C	G	3.322e^-4	0.96	INTRON Ref2
3R	3891198	3R_3891198_SNP [dm3] 3R_8065476_SNP [dm6]	A	G	3.324e^-4	0.96	INTRON mAChR-B
2L	12634723	2L_12634723_SNP [dm3] 2L_12634723_SNP [dm6]	A	T	3.330e^-4	0.96	INTRON Ref2
2L	12634739	2L_12634739_SNP [dm3] 2L_12634739_SNP [dm6]	C	T	3.330e^-4	0.96	INTRON Ref2
2L	12634744	2L_12634744_SNP [dm3] 2L_12634744_SNP [dm6]	G	A	3.330e^-4	0.96	INTRON Ref2
2L	12634746	2L_12634746_SNP [dm3] 2L_12634746_SNP [dm6]	A	T	3.330e^-4	0.96	INTRON Ref2
2L	12634754	2L_12634754_SNP [dm3] 2L_12634754_SNP [dm6]	A	G	3.330e^-4	0.96	INTRON Ref2
2L	12634777	2L_12634777_SNP [dm3] 2L_12634777_SNP [dm6]	A	T	3.330e^-4	0.96	INTRON Ref2
X	17782151	X_17782151_SNP [dm3] X_17888118_SNP [dm6]	C	T	3.334e^-4	0.96	UPSTREAM CG6788 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2011396	2L_2011396_SNP [dm3] 2L_2011396_SNP [dm6]	C	T	3.338e^-4	0.96	UPSTREAM CG4238 & 2 others INTRON CG4238
2R	20125567	2R_20125567_SNP [dm3] 2R_24238044_SNP [dm6]	G	A	3.352e^-4	0.96	EXON CR44827
2R	17660531	2R_17660531_DEL [dm3] 2R_21773026_DEL [dm6]	CGTAC	C	3.356e^-4	0.96	UPSTREAM CG4021 INTERGENIC
X	13019151	X_13019151_SNP [dm3] X_13125118_SNP [dm6]	G	T	3.357e^-4	0.96	INTRON CG32638
3L	13449740	3L_13449740_SNP [dm3] 3L_13456640_SNP [dm6]	C	T	3.357e^-4	0.96	SYNONYMOUS_CODING CG10116 INTRON CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13449815	3L_13449815_SNP [dm3] 3L_13456715_SNP [dm6]	C	T	3.357e^-4	0.96	SYNONYMOUS_CODING CG10116 INTRON CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14421560	2R_14421560_SNP [dm3] 2R_18534055_SNP [dm6]	T	C	3.360e^-4	0.96	SYNONYMOUS_CODING CG10924	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	9360307	3L_9360307_SNP [dm3] 3L_9367207_SNP [dm6]	G	A	3.363e^-4	0.96	UPSTREAM CG4452 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
2L	8662095	2L_8662095_SNP [dm3] 2L_8662095_SNP [dm6]	T	C	3.373e^-4	0.96	INTRON Sema-1a
3R	10875077	3R_10875077_SNP [dm3] 3R_15049355_SNP [dm6]	T	C	3.379e^-4	0.96	INTERGENIC
X	14921993	X_14921993_SNP [dm3] X_15027960_SNP [dm6]	A	G	3.388e^-4	0.96	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12369858	3L_12369858_SNP [dm3] 3L_12376758_SNP [dm6]	T	C	3.388e^-4	0.96	INTRON Ncc69
2R	14432345	2R_14432345_SNP [dm3] 2R_18544840_SNP [dm6]	G	C	3.411e^-4	0.96	NON_SYNONYMOUS_CODING Rgk2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18246057	3R_18246057_SNP [dm3] 3R_22420335_SNP [dm6]	G	T	3.411e^-4	0.96	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14826629	3L_14826629_SNP [dm3] 3L_14833529_SNP [dm6]	T	C	3.415e^-4	0.96	INTRON CG17839
2L	5294488	2L_5294488_SNP [dm3] 2L_5294488_SNP [dm6]	G	A	3.418e^-4	0.96	INTRON vri
2R	11594949	2R_11594949_SNP [dm3] 2R_15707444_SNP [dm6]	G	A	3.420e^-4	0.96	INTERGENIC
X	16256964	X_16256964_SNP [dm3] X_16362931_SNP [dm6]	A	G	3.425e^-4	0.96	INTRON nonA	TF binding site BDTNP1_TFBS_dl
3R	17975902	3R_17975902_SNP [dm3] 3R_22150180_SNP [dm6]	A	G	3.435e^-4	0.96	INTRON SKIP	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	1854280	2L_1854280_SNP [dm3] 2L_1854280_SNP [dm6]	G	A	3.445e^-4	0.96	NON_SYNONYMOUS_CODING wry
3L	9307515	3L_9307515_SNP [dm3] 3L_9314415_SNP [dm6]	G	T	3.446e^-4	0.96	INTERGENIC
3R	20443944	3R_20443944_SNP [dm3] 3R_24618222_SNP [dm6]	A	G	3.451e^-4	0.96	SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8730520	X_8730520_SNP [dm3] X_8836487_SNP [dm6]	A	G	3.463e^-4	0.96	EXON CR45537
X	14570667	X_14570667_SNP [dm3] X_14676634_SNP [dm6]	A	C	3.468e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13327182	3L_13327182_SNP [dm3] 3L_13334082_SNP [dm6]	T	G	3.472e^-4	0.96	INTERGENIC
3L	11468720	3L_11468720_SNP [dm3] 3L_11475620_SNP [dm6]	T	C	3.478e^-4	0.96	DOWNSTREAM Vha16-2 INTERGENIC
X	21198889	X_21198889_SNP [dm3] X_21327862_SNP [dm6]	T	A	3.479e^-4	0.96	UTR_3_PRIME CG1486 DOWNSTREAM tty
3R	3821302	3R_3821302_SNP [dm3] 3R_7995580_SNP [dm6]	A	G	3.496e^-4	0.96	UTR_5_PRIME CG2781
3R	3832054	3R_3832054_SNP [dm3] 3R_8006332_SNP [dm6]	C	A	3.496e^-4	0.96	NON_SYNONYMOUS_CODING CG2767 DOWNSTREAM CG2698
3R	3839013	3R_3839013_SNP [dm3] 3R_8013291_SNP [dm6]	G	A	3.496e^-4	0.96	UPSTREAM Pbp95 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3R	3846574	3R_3846574_SNP [dm3] 3R_8020852_SNP [dm6]	G	A	3.496e^-4	0.96	SYNONYMOUS_CODING CG2747	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3846904	3R_3846904_SNP [dm3] 3R_8021182_SNP [dm6]	T	C	3.496e^-4	0.96	SYNONYMOUS_CODING CG2747	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	3853566	3R_3853566_SNP [dm3] 3R_8027844_SNP [dm6]	G	A	3.496e^-4	0.96	UPSTREAM CG2747 DOWNSTREAM ImpE3 INTRON CG2747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	3858809	3R_3858809_DEL [dm3] 3R_8033087_DEL [dm6]	AGGAAAAAGAGCTTGTAATT...	A	3.496e^-4	0.96	UPSTREAM unc-45 & 1 other DOWNSTREAM CG10903 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3R	3858848	3R_3858848_SNP [dm3] 3R_8033126_SNP [dm6]	G	C	3.496e^-4	0.96	UPSTREAM unc-45 & 1 other DOWNSTREAM CG10903 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3R	3862227	3R_3862227_DEL [dm3] 3R_8036505_DEL [dm6]	GCGAAA	G	3.496e^-4	0.96	UTR_3_PRIME unc-45
3R	3862233	3R_3862233_INS [dm3] 3R_8036511_INS [dm6]	T	TGCCTTA	3.496e^-4	0.96	UTR_3_PRIME unc-45
3R	3862240	3R_3862240_SNP [dm3] 3R_8036518_SNP [dm6]	G	T	3.496e^-4	0.96	UTR_3_PRIME unc-45
2L	4342130	2L_4342130_SNP [dm3] 2L_4342130_SNP [dm6]	G	A	3.498e^-4	0.96	SYNONYMOUS_CODING Atet
X	3286592	X_3286592_SNP [dm3] X_3392559_SNP [dm6]	T	G	3.512e^-4	0.96	UTR_3_PRIME CG12535 DOWNSTREAM dm INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13955012	2R_13955012_SNP [dm3] 2R_18067507_SNP [dm6]	T	A	3.519e^-4	0.96	INTRON CG34386
3R	11944936	3R_11944936_SNP [dm3] 3R_16119214_SNP [dm6]	C	G	3.520e^-4	0.96	INTRON Sb
2L	1025375	2L_1025375_SNP [dm3] 2L_1025375_SNP [dm6]	A	G	3.524e^-4	0.96	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo
3R	19830988	3R_19830988_DEL [dm3] 3R_24005266_DEL [dm6]	TG	T	3.529e^-4	0.96	INTRON KrT95D
3L	18319029	3L_18319029_INS [dm3] 3L_18325929_INS [dm6]	T	TATATT	3.531e^-4	0.96	INTERGENIC
3R	4638305	3R_4638305_SNP [dm3] 3R_8812583_SNP [dm6]	C	T	3.531e^-4	0.96	DOWNSTREAM CG9821 INTRON CG9837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8562653	2L_8562653_SNP [dm3] 2L_8562653_SNP [dm6]	T	A	3.531e^-4	0.96	INTRON Sema-1a
3L	18319032	3L_18319032_SNP [dm3] 3L_18325932_SNP [dm6]	C	T	3.542e^-4	0.96	INTERGENIC
X	10396762	X_10396762_SNP [dm3] X_10502729_SNP [dm6]	T	A	3.544e^-4	0.96	INTRON spri	TF binding site mE1_TFBS_inv
3R	23003390	3R_23003390_SNP [dm3] 3R_27177668_SNP [dm6]	C	T	3.548e^-4	0.96	INTRON Ser	TF binding site mE1_TFBS_cad
3R	23003401	3R_23003401_SNP [dm3] 3R_27177679_SNP [dm6]	A	C	3.548e^-4	0.96	INTRON Ser	TF binding site mE1_TFBS_cad
2L	5273266	2L_5273266_SNP [dm3] 2L_5273266_SNP [dm6]	G	C	3.555e^-4	0.96	SYNONYMOUS_CODING Bsg25D DOWNSTREAM Bsg25D
3R	21258530	3R_21258530_SNP [dm3] 3R_25432808_SNP [dm6]	G	A	3.570e^-4	0.96	INTRON Fur1
3R	24780389	3R_24780389_SNP [dm3] 3R_28954667_SNP [dm6]	T	G	3.574e^-4	0.96	INTRON CG14521
2R	6736245	2R_6736245_SNP [dm3] 2R_10848740_SNP [dm6]	T	A	3.578e^-4	0.96	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3791121	3R_3791121_SNP [dm3] 3R_7965399_SNP [dm6]	A	T	3.580e^-4	0.96	INTRON dsx
3R	3795192	3R_3795192_SNP [dm3] 3R_7969470_SNP [dm6]	G	A	3.580e^-4	0.96	INTERGENIC
2R	13798083	2R_13798083_SNP [dm3] 2R_17910578_SNP [dm6]	A	T	3.588e^-4	0.96	INTRON Elk
3R	19718030	3R_19718030_SNP [dm3] 3R_23892308_SNP [dm6]	A	G	3.594e^-4	0.96	SYNONYMOUS_CODING tbrd-1	TF binding site mE1_TFBS_sens
2R	13180778	2R_13180778_SNP [dm3] 2R_17293273_SNP [dm6]	G	A	3.599e^-4	0.96	INTRON mbl
2L	7318986	2L_7318986_SNP [dm3] 2L_7318986_SNP [dm6]	C	G	3.606e^-4	0.96	INTERGENIC
X	14074422	X_14074422_SNP [dm3] X_14180389_SNP [dm6]	T	A	3.613e^-4	0.96	UPSTREAM CG11584 INTERGENIC
3R	3378740	3R_3378740_DEL [dm3] 3R_7553018_DEL [dm6]	GTCAGGTTAACCCAAGCGAG...	G	3.622e^-4	0.96	DOWNSTREAM CG45545 INTERGENIC
3L	12219353	3L_12219353_SNP [dm3] 3L_12226253_SNP [dm6]	C	G	3.622e^-4	0.96	INTRON app
3L	1875269	3L_1875269_SNP [dm3] 3L_1875269_SNP [dm6]	T	C	3.625e^-4	0.96	INTRON dre4	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1875276	3L_1875276_SNP [dm3] 3L_1875276_SNP [dm6]	C	T	3.625e^-4	0.96	INTRON dre4	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1858377	2L_1858377_SNP [dm3] 2L_1858377_SNP [dm6]	C	A	3.626e^-4	0.96	UTR_3_PRIME wry DOWNSTREAM CG31663
X	14859438	X_14859438_SNP [dm3] X_14965405_SNP [dm6]	G	T	3.628e^-4	0.96	INTRON eag
3R	3289014	3R_3289014_SNP [dm3] 3R_7463292_SNP [dm6]	G	A	3.628e^-4	0.96	INTERGENIC
2L	16184024	2L_16184024_SNP [dm3] 2L_16184024_SNP [dm6]	C	T	3.643e^-4	0.96	SYNONYMOUS_CODING Ca-alpha1D	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	11251980	3R_11251980_SNP [dm3] 3R_15426258_SNP [dm6]	C	G	3.652e^-4	0.96	INTRON CG6118
2R	9443123	2R_9443123_SNP [dm3] 2R_13555618_SNP [dm6]	A	C	3.660e^-4	0.96	UPSTREAM link DOWNSTREAM Roe1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	5809422	2L_5809422_SNP [dm3] 2L_5809422_SNP [dm6]	T	C	3.669e^-4	0.96	UPSTREAM CR44575 & 1 other DOWNSTREAM CG11034 INTERGENIC
X	21426970	X_21426970_SNP [dm3] X_21555943_SNP [dm6]	T	C	3.689e^-4	0.96	INTERGENIC	transposable element FlyBase
3R	23991129	3R_23991129_SNP [dm3] 3R_28165407_SNP [dm6]	C	T	3.692e^-4	0.96	INTRON CG34354
X	8899289	X_8899289_SNP [dm3] X_9005256_SNP [dm6]	G	A	3.694e^-4	0.96	INTRON rdgA & 1 other
3L	2706437	3L_2706437_SNP [dm3] 3L_2706437_SNP [dm6]	A	T	3.709e^-4	0.96	INTRON Fife
3L	2706447	3L_2706447_SNP [dm3] 3L_2706447_SNP [dm6]	A	T	3.709e^-4	0.96	INTRON Fife
2L	13865558	2L_13865558_SNP [dm3] 2L_13865558_SNP [dm6]	C	G	3.713e^-4	0.96	DOWNSTREAM CR44848 INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	11382186	3R_11382186_SNP [dm3] 3R_15556464_SNP [dm6]	A	G	3.715e^-4	0.96	INTERGENIC
3L	8583704	3L_8583704_SNP [dm3] 3L_8590604_SNP [dm6]	G	A	3.720e^-4	0.96	UTR_5_PRIME CG43078 INTRON CG43078	TF binding site mE1_TFBS_chinmo
2L	12481326	2L_12481326_SNP [dm3] 2L_12481326_SNP [dm6]	T	C	3.721e^-4	0.96	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	4565701	X_4565701_SNP [dm3] X_4671668_SNP [dm6]	C	T	3.725e^-4	0.96	INTRON rap
3R	4890878	3R_4890878_SNP [dm3] 3R_9065156_SNP [dm6]	A	T	3.732e^-4	0.96	UPSTREAM Ada & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	13024972	2R_13024972_SNP [dm3] 2R_17137467_SNP [dm6]	C	T	3.732e^-4	0.96	DOWNSTREAM Gbp INTRON CG11395
3L	2636487	3L_2636487_SNP [dm3] 3L_2636487_SNP [dm6]	T	A	3.734e^-4	0.96	UPSTREAM MEP-1 INTRON MEP-1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	13449422	3L_13449422_SNP [dm3] 3L_13456322_SNP [dm6]	G	T	3.737e^-4	0.96	SYNONYMOUS_CODING CG10116 INTRON CG10738	TF binding site mE1_TFBS_cad
3L	17333630	3L_17333630_SNP [dm3] 3L_17340530_SNP [dm6]	A	T	3.747e^-4	0.96	NON_SYNONYMOUS_CODING CG13727 UPSTREAM tRNA:CR32173	TF binding site mE1_TFBS_cad
3L	10640320	3L_10640320_SNP [dm3] 3L_10647220_SNP [dm6]	G	C	3.756e^-4	0.96	INTRON CG32066
3R	14139556	3R_14139556_SNP [dm3] 3R_18313834_SNP [dm6]	C	T	3.759e^-4	0.96	INTRON PKD
2L	15788853	2L_15788853_SNP [dm3] 2L_15788853_SNP [dm6]	T	C	3.763e^-4	0.96	SYNONYMOUS_CODING CG18109	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3865116	3R_3865116_SNP [dm3] 3R_8039394_SNP [dm6]	A	T	3.764e^-4	0.96	EXON CR44936	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	17178596	X_17178596_SNP [dm3] X_17284563_SNP [dm6]	G	C	3.767e^-4	0.96	UPSTREAM CG8661 INTRON CG5445
X	9669610	X_9669610_DEL [dm3] X_9775577_DEL [dm6]	TA	T	3.770e^-4	0.96	INTERGENIC
X	2192673	X_2192673_SNP [dm3] X_2298640_SNP [dm6]	T	G	3.775e^-4	0.96	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	18190129	3L_18190129_SNP [dm3] 3L_18197029_SNP [dm6]	T	C	3.777e^-4	0.96	DOWNSTREAM CR45234 INTERGENIC
3L	2653200	3L_2653200_SNP [dm3] 3L_2653200_SNP [dm6]	C	T	3.779e^-4	0.96	UTR_5_PRIME CG42304 UTR_3_PRIME Snup UPSTREAM CG42304
2R	7721983	2R_7721983_DEL [dm3] 2R_11834478_DEL [dm6]	TGGTAGGTC	T	3.785e^-4	0.96	INTRON Sobp
2R	15300314	2R_15300314_SNP [dm3] 2R_19412809_SNP [dm6]	T	G	3.786e^-4	0.96	INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14319864	2L_14319864_SNP [dm3] 2L_14319864_SNP [dm6]	G	A	3.803e^-4	0.96	SYNONYMOUS_CODING wb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18809080	2R_18809080_SNP [dm3] 2R_22921557_SNP [dm6]	C	A	3.803e^-4	0.96	NON_SYNONYMOUS_CODING Nup214	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1344207	2L_1344207_DEL [dm3] 2L_1344207_DEL [dm6]	AAATATT	A	3.805e^-4	0.96	UPSTREAM Cdlc2 & 1 other INTERGENIC
X	20191858	X_20191858_SNP [dm3] X_20320831_SNP [dm6]	G	A	3.806e^-4	0.96	INTRON CG1504	TF binding site mE1_TFBS_chinmo
3R	3785437	3R_3785437_SNP [dm3] 3R_7959715_SNP [dm6]	C	T	3.815e^-4	0.96	INTRON dsx	TF binding site mE1_TFBS_cad
3R	11178626	3R_11178626_SNP [dm3] 3R_15352904_SNP [dm6]	C	T	3.820e^-4	0.96	SYNONYMOUS_CODING CG5038 DOWNSTREAM Atg4b	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	4185942	3L_4185942_SNP [dm3] 3L_4185942_SNP [dm6]	A	T	3.821e^-4	0.96	DOWNSTREAM VhaM9.7-c INTRON CG18675 & 1 other
3L	8421815	3L_8421815_SNP [dm3] 3L_8428715_SNP [dm6]	T	A	3.831e^-4	0.96	DOWNSTREAM Cbl INTRON Cbl
2R	16829057	2R_16829057_SNP [dm3] 2R_20941552_SNP [dm6]	G	C	3.834e^-4	0.96	INTERGENIC
2L	3679916	2L_3679916_SNP [dm3] 2L_3679916_SNP [dm6]	T	C	3.834e^-4	0.96	INTRON CG34340
2R	18809129	2R_18809129_SNP [dm3] 2R_22921606_SNP [dm6]	G	A	3.834e^-4	0.96	NON_SYNONYMOUS_CODING Nup214	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19221092	3L_19221092_SNP [dm3] 3L_19227992_SNP [dm6]	A	G	3.843e^-4	0.96	INTRON fz2
X	21919890	X_21919890_SNP [dm3] X_22518054_SNP [dm6]	T	C	3.847e^-4	0.96	INTRON CG17600
X	14696500	X_14696500_SNP [dm3] X_14802467_SNP [dm6]	G	A	3.861e^-4	0.96	INTRON rut
2L	15411407	2L_15411407_SNP [dm3] 2L_15411407_SNP [dm6]	G	T	3.862e^-4	0.96	INTERGENIC
3R	4890805	3R_4890805_SNP [dm3] 3R_9065083_SNP [dm6]	T	C	3.863e^-4	0.96	UPSTREAM Ada & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	10640342	3L_10640342_SNP [dm3] 3L_10647242_SNP [dm6]	G	A	3.868e^-4	0.96	INTRON CG32066
X	21016419	X_21016419_SNP [dm3] X_21145392_SNP [dm6]	G	T	3.871e^-4	0.96	DOWNSTREAM CG45154 INTERGENIC
3R	23214960	3R_23214960_SNP [dm3] 3R_27389238_SNP [dm6]	A	C	3.875e^-4	0.96	INTRON side	TF binding site mE1_TFBS_chinmo
3L	1629966	3L_1629966_DEL [dm3] 3L_1629966_DEL [dm6]	TGTGTGT	T	3.877e^-4	0.96	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_chinmo
2L	1491813	2L_1491813_SNP [dm3] 2L_1491813_SNP [dm6]	C	A	3.882e^-4	0.96	UPSTREAM CG31928 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	15385780	2R_15385780_SNP [dm3] 2R_19498275_SNP [dm6]	T	C	3.896e^-4	0.96	SYNONYMOUS_CODING CG15120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13956426	2R_13956426_INS [dm3] 2R_18068921_INS [dm6]	A	AAG	3.901e^-4	0.96	INTRON CG34386
2L	1491805	2L_1491805_SNP [dm3] 2L_1491805_SNP [dm6]	T	A	3.904e^-4	0.96	UPSTREAM CG31928 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	9733229	3R_9733229_SNP [dm3] 3R_13907507_SNP [dm6]	A	C	3.907e^-4	0.96	INTERGENIC
2R	17977092	2R_17977092_INS [dm3] 2R_22089587_INS [dm6]	G	GTTGGATGG	3.918e^-4	0.96	UTR_3_PRIME CG43393 UPSTREAM CG13502
X	12098256	X_12098256_SNP [dm3] X_12204223_SNP [dm6]	T	A	3.928e^-4	0.96	UTR_5_PRIME Ten-a INTRON Ten-a	TF binding site mE1_TFBS_Trl
3R	13264988	3R_13264988_DEL [dm3] 3R_17439266_DEL [dm6]	TTT	T	3.931e^-4	0.96	INTRON CG5873 & 1 other
2L	2110477	2L_2110477_SNP [dm3] 2L_2110477_SNP [dm6]	A	G	3.931e^-4	0.96	UPSTREAM dpr3 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10635524	3L_10635524_SNP [dm3] 3L_10642424_SNP [dm6]	G	A	3.937e^-4	0.96	SYNONYMOUS_CODING CG14154 INTRON CG32066
2L	8606311	2L_8606311_SNP [dm3] 2L_8606311_SNP [dm6]	A	T	3.939e^-4	0.96	INTRON Sema-1a
X	10110226	X_10110226_SNP [dm3] X_10216193_SNP [dm6]	G	A	3.953e^-4	0.96	UTR_3_PRIME l_1_G0230 INTRON CG2962
2R	11948673	2R_11948673_SNP [dm3] 2R_16061168_SNP [dm6]	C	A	3.960e^-4	0.96	DOWNSTREAM CG8405 INTERGENIC
2R	10949385	2R_10949385_SNP [dm3] 2R_15061880_SNP [dm6]	A	C	3.960e^-4	0.96	INTERGENIC
3R	3817056	3R_3817056_SNP [dm3] 3R_7991334_SNP [dm6]	G	A	3.972e^-4	0.96	INTRON CG2781
3L	13327190	3L_13327190_SNP [dm3] 3L_13334090_SNP [dm6]	A	C	3.979e^-4	0.96	INTERGENIC
2R	7324467	2R_7324467_SNP [dm3] 2R_11436962_SNP [dm6]	T	G	3.985e^-4	0.96	INTRON CG7777
3R	2327517	3R_2327517_SNP [dm3] 3R_6501795_SNP [dm6]	C	T	3.986e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13744210	3R_13744210_SNP [dm3] 3R_17918488_SNP [dm6]	A	C	3.988e^-4	0.96	INTERGENIC
2R	14706168	2R_14706168_SNP [dm3] 2R_18818663_SNP [dm6]	T	A	3.991e^-4	0.96	UPSTREAM Phb2 INTERGENIC
2R	17982608	2R_17982608_SNP [dm3] 2R_22095103_SNP [dm6]	T	C	3.993e^-4	0.96	INTRON CG11073
X	12190056	X_12190056_SNP [dm3] X_12296023_SNP [dm6]	G	A	4.005e^-4	0.96	INTRON Ten-a
2R	14706091	2R_14706091_SNP [dm3] 2R_18818586_SNP [dm6]	G	A	4.011e^-4	0.96	UPSTREAM Phb2 INTERGENIC
3L	3182151	3L_3182151_SNP [dm3] 3L_3182151_SNP [dm6]	C	A	4.022e^-4	0.96	SYNONYMOUS_CODING Girdin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7825673	2L_7825673_INS [dm3] 2L_7825673_INS [dm6]	T	TAAT	4.030e^-4	0.96	UTR_3_PRIME Rack1 DOWNSTREAM CG7115	TF binding site mE1_TFBS_cad
3L	6022949	3L_6022949_SNP [dm3] 3L_6029849_SNP [dm6]	A	T	4.038e^-4	0.96	INTERGENIC
2R	14367847	2R_14367847_DEL [dm3] 2R_18480342_DEL [dm6]	TGT	T	4.043e^-4	0.96	INTRON CG30116
3L	4183578	3L_4183578_SNP [dm3] 3L_4183578_SNP [dm6]	C	T	4.053e^-4	0.96	SYNONYMOUS_CODING Teh3 INTRON CG18675 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13816508	3R_13816508_SNP [dm3] 3R_17990786_SNP [dm6]	T	C	4.056e^-4	0.96	INTRON cpo
X	21460396	X_21460396_SNP [dm3] X_21589369_SNP [dm6]	G	C	4.075e^-4	0.96	INTERGENIC
X	20563425	X_20563425_SNP [dm3] X_20692398_SNP [dm6]	C	T	4.075e^-4	0.96	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6944111	3L_6944111_SNP [dm3] 3L_6951011_SNP [dm6]	A	G	4.076e^-4	0.96	SYNONYMOUS_CODING CG10077 DOWNSTREAM CG10077	TF binding site mE1_TFBS_inv
2L	2544450	2L_2544450_SNP [dm3] 2L_2544450_SNP [dm6]	G	A	4.076e^-4	0.96	INTERGENIC
2L	8696099	2L_8696099_SNP [dm3] 2L_8696099_SNP [dm6]	C	T	4.079e^-4	0.96	INTRON Hnf4
2L	12634741	2L_12634741_SNP [dm3] 2L_12634741_SNP [dm6]	A	G	4.081e^-4	0.96	INTRON Ref2
2R	17927577	2R_17927577_SNP [dm3] 2R_22040072_SNP [dm6]	C	T	4.091e^-4	0.96	UPSTREAM CG34370 INTERGENIC
3R	17527800	3R_17527800_DEL [dm3] 3R_21702078_DEL [dm6]	TCTCT	T	4.093e^-4	0.96	INTRON CG31176
3L	10527606	3L_10527606_SNP [dm3] 3L_10534506_SNP [dm6]	T	A	4.096e^-4	0.96	INTRON A2bp1
2R	7064091	2R_7064091_SNP [dm3] 2R_11176586_SNP [dm6]	C	G	4.124e^-4	0.96	INTRON shn
2L	4678505	2L_4678505_SNP [dm3] 2L_4678505_SNP [dm6]	C	T	4.144e^-4	0.96	INTERGENIC
3L	13897808	3L_13897808_SNP [dm3] 3L_13904708_SNP [dm6]	A	C	4.147e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6098409	2R_6098409_SNP [dm3] 2R_10210904_SNP [dm6]	G	C	4.152e^-4	0.96	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	10396749	X_10396749_SNP [dm3] X_10502716_SNP [dm6]	C	T	4.155e^-4	0.96	INTRON spri	TF binding site mE1_TFBS_inv
2L	4450281	2L_4450281_SNP [dm3] 2L_4450281_SNP [dm6]	C	T	4.158e^-4	0.96	SYNONYMOUS_CODING CG15439	TF binding site mE1_TFBS_cad
2R	14156212	2R_14156212_SNP [dm3] 2R_18268707_SNP [dm6]	G	A	4.159e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13928241	3R_13928241_SNP [dm3] 3R_18102519_SNP [dm6]	T	C	4.171e^-4	0.96	INTRON sr
3R	7108917	3R_7108917_SNP [dm3] 3R_11283195_SNP [dm6]	G	A	4.173e^-4	0.96	INTRON CR31386
3L	21922791	3L_21922791_SNP [dm3] 3L_21929691_SNP [dm6]	T	G	4.180e^-4	0.96	UTR_3_PRIME mub
3L	15858564	3L_15858564_SNP [dm3] 3L_15865464_SNP [dm6]	A	G	4.184e^-4	0.96	INTRON pHCl
3L	841015	3L_841015_SNP [dm3] 3L_841015_SNP [dm6]	A	T	4.186e^-4	0.96	UPSTREAM Gr61a INTRON CG13902	TF binding site mE1_TFBS_sens
3L	841016	3L_841016_SNP [dm3] 3L_841016_SNP [dm6]	T	A	4.186e^-4	0.96	UPSTREAM Gr61a INTRON CG13902	TF binding site mE1_TFBS_sens
2L	16381279	2L_16381279_SNP [dm3] 2L_16381279_SNP [dm6]	G	A	4.188e^-4	0.96	INTERGENIC
2R	20021619	2R_20021619_SNP [dm3] 2R_24134096_SNP [dm6]	A	T	4.196e^-4	0.96	SYNONYMOUS_CODING Zfrp8 UPSTREAM tamo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25427051	3R_25427051_SNP [dm3] 3R_29601329_SNP [dm6]	T	A	4.218e^-4	0.96	UPSTREAM CG7568 INTRON alph
2R	17975715	2R_17975715_SNP [dm3] 2R_22088210_SNP [dm6]	A	T	4.218e^-4	0.96	UPSTREAM CG13502 INTRON CG13502
3R	13421625	3R_13421625_SNP [dm3] 3R_17595903_SNP [dm6]	A	G	4.221e^-4	0.96	SPLICE_SITE_REGION Sgs5 SYNONYMOUS_CODING Sgs5 UPSTREAM CG7606 DOWNSTREAM CG7587
2R	2941843	2R_2941843_SNP [dm3] 2R_7054338_SNP [dm6]	T	C	4.222e^-4	0.96	UTR_3_PRIME Tsp42En UPSTREAM Tsp42Eo DOWNSTREAM Tsp42Ep & 1 other
3R	3789045	3R_3789045_SNP [dm3] 3R_7963323_SNP [dm6]	A	G	4.226e^-4	0.96	UPSTREAM dsx INTRON dsx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	12614426	2L_12614426_DEL [dm3] 2L_12614426_DEL [dm6]	GACG	G	4.231e^-4	0.96	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4185778	3L_4185778_SNP [dm3] 3L_4185778_SNP [dm6]	A	C	4.232e^-4	0.96	DOWNSTREAM VhaM9.7-c INTRON CG18675 & 1 other
3R	2552389	3R_2552389_SNP [dm3] 3R_6726667_SNP [dm6]	T	A	4.236e^-4	0.96	INTRON pb	regulatory region FlyBase REDfly_CRMs
3L	6147725	3L_6147725_SNP [dm3] 3L_6154625_SNP [dm6]	T	A	4.239e^-4	0.96	DOWNSTREAM CR45421 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6150026	3L_6150026_SNP [dm3] 3L_6156926_SNP [dm6]	C	T	4.239e^-4	0.96	INTRON CG13297
2L	6273258	2L_6273258_MNP [dm3] 2L_6273258_MNP [dm6]	GCATTCT	AAAAATA	4.240e^-4	0.96	INTRON Ddr
X	13000091	X_13000091_SNP [dm3] X_13106058_SNP [dm6]	T	A	4.240e^-4	0.96	INTRON CG43313
3L	6509254	3L_6509254_SNP [dm3] 3L_6516154_SNP [dm6]	T	C	4.243e^-4	0.96	INTRON sfl
2L	15980548	2L_15980548_SNP [dm3] 2L_15980548_SNP [dm6]	A	C	4.245e^-4	0.96	DOWNSTREAM CG10839 INTRON CG10839
2L	12851957	2L_12851957_SNP [dm3] 2L_12851957_SNP [dm6]	T	C	4.254e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10465570	3L_10465570_SNP [dm3] 3L_10472470_SNP [dm6]	G	A	4.254e^-4	0.96	INTERGENIC
X	5319276	X_5319276_SNP [dm3] X_5425243_SNP [dm6]	C	T	4.259e^-4	0.96	SYNONYMOUS_CODING CG4165	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	22165464	X_22165464_SNP [dm3] X_22763628_SNP [dm6]	C	T	4.274e^-4	0.96	DOWNSTREAM CR44109 INTRON CR44997
X	3999978	X_3999978_SNP [dm3] X_4105945_SNP [dm6]	C	A	4.288e^-4	0.96	UPSTREAM cib DOWNSTREAM brn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	3641604	3R_3641604_SNP [dm3] 3R_7815882_SNP [dm6]	A	C	4.288e^-4	0.96	INTRON CG34384
X	4006661	X_4006661_SNP [dm3] X_4112628_SNP [dm6]	A	G	4.295e^-4	0.96	SYNONYMOUS_CODING Nsun2	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	5240042	3L_5240042_SNP [dm3] 3L_5246942_SNP [dm6]	C	A	4.301e^-4	0.96	INTRON shep
3R	9855911	3R_9855911_SNP [dm3] 3R_14030189_SNP [dm6]	G	C	4.306e^-4	0.96	SYNONYMOUS_CODING Cyp6d5 INTRON rdx	TF binding site BDTNP1_TFBS_dl
2R	14156201	2R_14156201_SNP [dm3] 2R_18268696_SNP [dm6]	C	T	4.314e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13519218	3R_13519218_SNP [dm3] 3R_17693496_SNP [dm6]	G	A	4.316e^-4	0.96	INTRON osa	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
X	20975794	X_20975794_SNP [dm3] X_21104767_SNP [dm6]	C	T	4.327e^-4	0.96	UTR_3_PRIME CG1503 DOWNSTREAM CG1503 INTRON stg1 & 1 other
X	16536208	X_16536208_SNP [dm3] X_16642175_SNP [dm6]	G	C	4.328e^-4	0.96	SYNONYMOUS_CODING mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14005462	2R_14005462_SNP [dm3] 2R_18117957_SNP [dm6]	G	A	4.329e^-4	0.96	UTR_3_PRIME stau	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8572618	3L_8572618_SNP [dm3] 3L_8579518_SNP [dm6]	G	A	4.334e^-4	0.96	SYNONYMOUS_CODING CG43078	TF binding site mE1_TFBS_inv
3R	11363308	3R_11363308_SNP [dm3] 3R_15537586_SNP [dm6]	G	A	4.358e^-4	0.96	UPSTREAM CG18522 DOWNSTREAM CG18519 INTERGENIC
3L	14185560	3L_14185560_SNP [dm3] 3L_14192460_SNP [dm6]	C	G	4.373e^-4	0.96	INTRON nuf	TF binding site BDTNP1_TFBS_dl
X	17007576	X_17007576_SNP [dm3] X_17113543_SNP [dm6]	A	T	4.379e^-4	0.96	INTRON CG5004
2R	14516150	2R_14516150_SNP [dm3] 2R_18628645_SNP [dm6]	C	T	4.383e^-4	0.96	SYNONYMOUS_CODING Eip55E DOWNSTREAM Sec6 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13449892	3L_13449892_SNP [dm3] 3L_13456792_SNP [dm6]	G	A	4.389e^-4	0.96	SYNONYMOUS_CODING CG10116 INTRON CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14806770	X_14806770_SNP [dm3] X_14912737_SNP [dm6]	T	A	4.401e^-4	0.96	NON_SYNONYMOUS_CODING CG12398 INTRON Flo2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1303762	2L_1303762_SNP [dm3] 2L_1303762_SNP [dm6]	T	G	4.402e^-4	0.96	INTERGENIC
3L	6022931	3L_6022931_SNP [dm3] 3L_6029831_SNP [dm6]	G	A	4.429e^-4	0.96	INTERGENIC
3L	6022932	3L_6022932_SNP [dm3] 3L_6029832_SNP [dm6]	G	A	4.429e^-4	0.96	INTERGENIC
3R	16333430	3R_16333430_SNP [dm3] 3R_20507708_SNP [dm6]	A	T	4.431e^-4	0.96	NON_SYNONYMOUS_CODING CG4288	TF binding site mE1_TFBS_cad
X	20412615	X_20412615_SNP [dm3] X_20541588_SNP [dm6]	T	G	4.437e^-4	0.96	INTRON RunxB
X	2782812	X_2782812_SNP [dm3] X_2888779_SNP [dm6]	G	C	4.438e^-4	0.96	INTRON kirre
3R	22921928	3R_22921928_SNP [dm3] 3R_27096206_SNP [dm6]	A	T	4.440e^-4	0.96	NON_SYNONYMOUS_CODING eater DOWNSTREAM CG14259
3L	14979599	3L_14979599_SNP [dm3] 3L_14986499_SNP [dm6]	C	T	4.448e^-4	0.96	UPSTREAM mnd INTRON mnd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
3L	13334096	3L_13334096_SNP [dm3] 3L_13340996_SNP [dm6]	A	G	4.451e^-4	0.96	INTERGENIC
3L	13334110	3L_13334110_SNP [dm3] 3L_13341010_SNP [dm6]	G	A	4.451e^-4	0.96	INTERGENIC
2L	18068676	2L_18068676_SNP [dm3] 2L_18068676_SNP [dm6]	A	T	4.452e^-4	0.96	INTRON rdo
3L	1435551	3L_1435551_SNP [dm3] 3L_1435551_SNP [dm6]	G	A	4.453e^-4	0.96	SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14570693	X_14570693_SNP [dm3] X_14676660_SNP [dm6]	G	T	4.455e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	5552084	X_5552084_SNP [dm3] X_5658051_SNP [dm6]	C	T	4.458e^-4	0.96	INTRON CG42265
2R	15818040	2R_15818040_SNP [dm3] 2R_19930535_SNP [dm6]	G	T	4.468e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13327239	3L_13327239_SNP [dm3] 3L_13334139_SNP [dm6]	T	C	4.470e^-4	0.96	INTERGENIC
2L	2905165	2L_2905165_SNP [dm3] 2L_2905165_SNP [dm6]	T	A	4.470e^-4	0.96	INTRON lilli
X	12113064	X_12113064_DEL [dm3] X_12219031_DEL [dm6]	CCAAAG	C	4.481e^-4	0.96	INTRON Ten-a	TF binding site mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2L	14301881	2L_14301881_SNP [dm3] 2L_14301881_SNP [dm6]	A	G	4.485e^-4	0.96	INTRON wb
2R	6872562	2R_6872562_SNP [dm3] 2R_10985057_SNP [dm6]	A	C	4.490e^-4	0.96	INTRON luna
X	18050975	X_18050975_SNP [dm3] X_18156942_SNP [dm6]	G	C	4.511e^-4	0.96	INTRON Frq1
3L	1058518	3L_1058518_SNP [dm3] 3L_1058518_SNP [dm6]	G	A	4.513e^-4	0.96	INTRON bab1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2267610	X_2267610_SNP [dm3] X_2373577_SNP [dm6]	A	G	4.514e^-4	0.96	SYNONYMOUS_CODING PsGEF UTR_3_PRIME PsGEF	TF binding site mE1_TFBS_chinmo
3L	3688858	3L_3688858_SNP [dm3] 3L_3688858_SNP [dm6]	T	C	4.518e^-4	0.96	EXON CR43484
X	12365202	X_12365202_SNP [dm3] X_12471169_SNP [dm6]	G	T	4.519e^-4	0.96	UPSTREAM CG42258 INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4307532	2L_4307532_SNP [dm3] 2L_4307532_SNP [dm6]	A	C	4.521e^-4	0.96	INTRON tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2052427	3L_2052427_SNP [dm3] 3L_2052427_SNP [dm6]	A	G	4.532e^-4	0.96	INTRON sls
2L	6276463	2L_6276463_SNP [dm3] 2L_6276463_SNP [dm6]	C	T	4.539e^-4	0.96	INTRON Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25755584	3R_25755584_SNP [dm3] 3R_29929862_SNP [dm6]	G	A	4.541e^-4	0.96	SYNONYMOUS_CODING CG31202 DOWNSTREAM Cog7
2R	17996887	2R_17996887_SNP [dm3] 2R_22109382_SNP [dm6]	T	C	4.542e^-4	0.96	INTRON Vrp1	TF binding site mE1_TFBS_cad
3L	19320431	3L_19320431_SNP [dm3] 3L_19327331_SNP [dm6]	G	A	4.544e^-4	0.96	INTRON pip
X	8730523	X_8730523_SNP [dm3] X_8836490_SNP [dm6]	G	C	4.549e^-4	0.96	EXON CR45537
3L	9360232	3L_9360232_SNP [dm3] 3L_9367132_SNP [dm6]	A	G	4.558e^-4	0.96	UPSTREAM CG4452 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
3R	10275291	3R_10275291_SNP [dm3] 3R_14449569_SNP [dm6]	C	T	4.561e^-4	0.96	INTRON cv-c
3R	7169073	3R_7169073_SNP [dm3] 3R_11343351_SNP [dm6]	G	A	4.563e^-4	0.96	INTRON pros
X	12286120	X_12286120_SNP [dm3] X_12392087_SNP [dm6]	G	A	4.568e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	21925087	3L_21925087_SNP [dm3] 3L_21931987_SNP [dm6]	C	T	4.571e^-4	0.96	UTR_3_PRIME mub
2L	16165980	2L_16165980_SNP [dm3] 2L_16165980_SNP [dm6]	T	G	4.578e^-4	0.96	INTRON Ca-alpha1D
2R	9435073	2R_9435073_SNP [dm3] 2R_13547568_SNP [dm6]	C	G	4.586e^-4	0.96	NON_SYNONYMOUS_CODING CG6145 UPSTREAM CG6145 DOWNSTREAM CG33156	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4002098	X_4002098_SNP [dm3] X_4108065_SNP [dm6]	C	T	4.588e^-4	0.96	UPSTREAM cib INTRON cib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	12110706	3L_12110706_SNP [dm3] 3L_12117606_SNP [dm6]	A	T	4.591e^-4	0.96	NON_SYNONYMOUS_CODING l_3_j2D3 UPSTREAM ssp	TF binding site BDTNP1_TFBS_dl
3L	12110967	3L_12110967_SNP [dm3] 3L_12117867_SNP [dm6]	A	T	4.591e^-4	0.96	UTR_3_PRIME l_3_j2D3 UPSTREAM ssp
3L	7277443	3L_7277443_SNP [dm3] 3L_7284343_SNP [dm6]	G	C	4.592e^-4	0.96	INTRON unc-13-4A
2L	12478836	2L_12478836_SNP [dm3] 2L_12478836_SNP [dm6]	G	A	4.593e^-4	0.96	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
X	20691322	X_20691322_SNP [dm3] X_20820295_SNP [dm6]	C	T	4.597e^-4	0.96	INTRON shakB
3L	11296362	3L_11296362_SNP [dm3] 3L_11303262_SNP [dm6]	A	C	4.598e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7110515	3R_7110515_SNP [dm3] 3R_11284793_SNP [dm6]	G	A	4.605e^-4	0.96	INTRON CR31386	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15918819	3R_15918819_SNP [dm3] 3R_20093097_SNP [dm6]	C	T	4.608e^-4	0.96	INTERGENIC
X	21985112	X_21985112_DEL [dm3] X_22583276_DEL [dm6]	TT	T	4.620e^-4	0.96	DOWNSTREAM Cda4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14860541	X_14860541_SNP [dm3] X_14966508_SNP [dm6]	A	G	4.624e^-4	0.96	INTRON eag
X	18050948	X_18050948_SNP [dm3] X_18156915_SNP [dm6]	T	A	4.626e^-4	0.96	INTRON Frq1
3L	10640500	3L_10640500_INS [dm3] 3L_10647400_INS [dm6]	T	TT	4.633e^-4	0.96	INTRON CG32066
3L	10832890	3L_10832890_SNP [dm3] 3L_10839790_SNP [dm6]	G	T	4.636e^-4	0.96	INTERGENIC
2L	1315013	2L_1315013_SNP [dm3] 2L_1315013_SNP [dm6]	C	A	4.644e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9048428	3R_9048428_SNP [dm3] 3R_13222706_SNP [dm6]	C	T	4.644e^-4	0.96	DOWNSTREAM Ace INTERGENIC
X	20906948	X_20906948_DEL [dm3] X_21035921_DEL [dm6]	AGA	A	4.645e^-4	0.96	UTR_5_PRIME Ntf-2 INTRON Ntf-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	14301875	2L_14301875_SNP [dm3] 2L_14301875_SNP [dm6]	G	A	4.654e^-4	0.96	INTRON wb
2L	14301876	2L_14301876_SNP [dm3] 2L_14301876_SNP [dm6]	C	T	4.654e^-4	0.96	INTRON wb
3L	19200964	3L_19200964_SNP [dm3] 3L_19207864_SNP [dm6]	A	T	4.657e^-4	0.96	INTRON fz2
2L	3686967	2L_3686967_SNP [dm3] 2L_3686967_SNP [dm6]	T	C	4.659e^-4	0.96	INTRON CG34340
3R	8744245	3R_8744245_SNP [dm3] 3R_12918523_SNP [dm6]	G	A	4.659e^-4	0.96	UTR_5_PRIME beat-Vb
3L	3745406	3L_3745406_SNP [dm3] 3L_3745406_SNP [dm6]	C	T	4.683e^-4	0.96	INTRON CG32264
2R	10409299	2R_10409299_SNP [dm3] 2R_14521794_SNP [dm6]	A	C	4.690e^-4	0.96	INTERGENIC
2R	12528695	2R_12528695_SNP [dm3] 2R_16641190_SNP [dm6]	C	T	4.692e^-4	0.96	UPSTREAM gprs INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	10979891	3L_10979891_SNP [dm3] 3L_10986791_SNP [dm6]	G	T	4.698e^-4	0.96	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19203527	3L_19203527_INS [dm3] 3L_19210427_INS [dm6]	A	AA	4.698e^-4	0.96	INTRON fz2
2R	6083530	2R_6083530_INS [dm3] 2R_10196025_INS [dm6]	G	GTGG	4.699e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	15614253	2L_15614253_SNP [dm3] 2L_15614253_SNP [dm6]	G	T	4.701e^-4	0.96	SYNONYMOUS_CODING CG15254 UPSTREAM CG11864
X	16569042	X_16569042_SNP [dm3] X_16675009_SNP [dm6]	C	G	4.702e^-4	0.96	INTRON CG13012
3L	11487100	3L_11487100_SNP [dm3] 3L_11494000_SNP [dm6]	A	G	4.705e^-4	0.96	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	19216930	3L_19216930_SNP [dm3] 3L_19223830_SNP [dm6]	A	T	4.710e^-4	0.96	INTRON fz2
2R	19690595	2R_19690595_SNP [dm3] 2R_23803072_SNP [dm6]	A	T	4.711e^-4	0.96	DOWNSTREAM CG30177 INTERGENIC
X	14044335	X_14044335_SNP [dm3] X_14150302_SNP [dm6]	G	A	4.716e^-4	0.96	INTERGENIC
3R	7108266	3R_7108266_SNP [dm3] 3R_11282544_SNP [dm6]	G	A	4.718e^-4	0.96	INTRON CR31386	TF binding site mE1_TFBS_HSA
3R	7108272	3R_7108272_SNP [dm3] 3R_11282550_SNP [dm6]	T	G	4.718e^-4	0.96	INTRON CR31386	TF binding site mE1_TFBS_HSA
3L	9360185	3L_9360185_SNP [dm3] 3L_9367085_SNP [dm6]	T	C	4.718e^-4	0.96	UPSTREAM CG4452 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
3L	21761261	3L_21761261_DEL [dm3] 3L_21768161_DEL [dm6]	CG	C	4.721e^-4	0.96	INTRON Syn1 & 1 other
2L	13677366	2L_13677366_SNP [dm3] 2L_13677366_SNP [dm6]	G	A	4.723e^-4	0.96	UTR_3_PRIME CG31814 DOWNSTREAM CG31814
2L	8662108	2L_8662108_SNP [dm3] 2L_8662108_SNP [dm6]	C	T	4.723e^-4	0.96	INTRON Sema-1a
3L	5245063	3L_5245063_DEL [dm3] 3L_5251963_DEL [dm6]	GCTGTATTTATTTATATAAA...	TTTGAATAAATCAGTAAAT...	4.724e^-4	0.96	INTRON shep
3L	9298768	3L_9298768_INS [dm3] 3L_9305668_INS [dm6]	T	CAA	4.729e^-4	0.96	INTERGENIC
3L	3639513	3L_3639513_SNP [dm3] 3L_3639513_SNP [dm6]	T	G	4.736e^-4	0.96	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	976440	3R_976440_SNP [dm3] 3R_5150718_SNP [dm6]	G	A	4.738e^-4	0.96	UPSTREAM dpr16 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17676065	2R_17676065_SNP [dm3] 2R_21788560_SNP [dm6]	G	A	4.740e^-4	0.96	INTERGENIC
3R	20741522	3R_20741522_SNP [dm3] 3R_24915800_SNP [dm6]	G	A	4.746e^-4	0.96	UPSTREAM tRNA:CR31416 DOWNSTREAM CG44254 & 1 other INTRON PIG-S	TF binding site mE1_TFBS_cad
2L	914332	2L_914332_SNP [dm3] 2L_914332_SNP [dm6]	C	T	4.750e^-4	0.96	SPLICE_SITE_REGION GluRIIC INTRON GluRIIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6568854	2R_6568854_SNP [dm3] 2R_10681349_SNP [dm6]	T	A	4.753e^-4	0.96	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	5237410	X_5237410_SNP [dm3] X_5343377_SNP [dm6]	G	T	4.791e^-4	0.967	INTRON SK
3L	4390630	3L_4390630_SNP [dm3] 3L_4390630_SNP [dm6]	G	A	4.796e^-4	0.967	NON_SYNONYMOUS_CODING slow	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14301892	2L_14301892_DEL [dm3] 2L_14301892_DEL [dm6]	TG	A	4.821e^-4	0.969	INTRON wb
X	5178018	X_5178018_SNP [dm3] X_5283985_SNP [dm6]	A	T	4.823e^-4	0.969	INTERGENIC
3L	13334159	3L_13334159_SNP [dm3] 3L_13341059_SNP [dm6]	A	C	4.825e^-4	0.969	INTERGENIC
3R	9870791	3R_9870791_INS [dm3] 3R_14045069_INS [dm6]	T	CACTCA	4.834e^-4	0.969	UPSTREAM tRNA:S2b:88A INTERGENIC
3L	23526364	3L_23526364_SNP [dm3] 3L_23533264_SNP [dm6]	A	C	4.840e^-4	0.969	INTERGENIC	transposable element FlyBase
3R	18165023	3R_18165023_SNP [dm3] 3R_22339301_SNP [dm6]	G	A	4.841e^-4	0.969	INTRON CG5388
2R	13897020	2R_13897020_SNP [dm3] 2R_18009515_SNP [dm6]	C	T	4.847e^-4	0.969	INTERGENIC
X	4007372	X_4007372_SNP [dm3] X_4113339_SNP [dm6]	A	C	4.861e^-4	0.969	SYNONYMOUS_CODING Nsun2 UPSTREAM dgt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2715643	2L_2715643_SNP [dm3] 2L_2715643_SNP [dm6]	C	T	4.869e^-4	0.969	INTRON CG31690
2L	5809384	2L_5809384_SNP [dm3] 2L_5809384_SNP [dm6]	C	T	4.872e^-4	0.969	UPSTREAM CR44575 & 1 other DOWNSTREAM CG11034 INTERGENIC
3L	11468672	3L_11468672_SNP [dm3] 3L_11475572_SNP [dm6]	A	G	4.878e^-4	0.969	DOWNSTREAM Vha16-2 INTERGENIC
3R	3851149	3R_3851149_SNP [dm3] 3R_8025427_SNP [dm6]	A	C	4.878e^-4	0.969	INTRON CG2747
2L	16424170	2L_16424170_SNP [dm3] 2L_16424170_SNP [dm6]	T	G	4.881e^-4	0.969	INTRON CG5888	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	17996834	2R_17996834_SNP [dm3] 2R_22109329_SNP [dm6]	G	A	4.881e^-4	0.969	INTRON Vrp1	TF binding site mE1_TFBS_cad
3R	12531675	3R_12531675_SNP [dm3] 3R_16705953_SNP [dm6]	C	A	4.889e^-4	0.969	INTRON Ubx	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6899874	3R_6899874_SNP [dm3] 3R_11074152_SNP [dm6]	A	T	4.905e^-4	0.969	INTERGENIC
3L	4202180	3L_4202180_SNP [dm3] 3L_4202180_SNP [dm6]	T	C	4.909e^-4	0.969	SYNONYMOUS_CODING CG15005 INTRON CG43367	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11408455	3L_11408455_SNP [dm3] 3L_11415355_SNP [dm6]	T	C	4.913e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11408457	3L_11408457_SNP [dm3] 3L_11415357_SNP [dm6]	A	G	4.913e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4196979	3L_4196979_SNP [dm3] 3L_4196979_SNP [dm6]	A	C	4.927e^-4	0.969	INTRON CG43367
X	10873321	X_10873321_DEL [dm3] X_10979288_DEL [dm6]	GT	G	4.941e^-4	0.969	INTRON CG42339
2R	13798085	2R_13798085_INS [dm3] 2R_17910580_INS [dm6]	A	AG	4.946e^-4	0.969	INTRON Elk
2L	13920237	2L_13920237_SNP [dm3] 2L_13920237_SNP [dm6]	G	A	4.951e^-4	0.969	DOWNSTREAM CG16886 INTRON Ance-3
X	16891416	X_16891416_SNP [dm3] X_16997383_SNP [dm6]	G	A	4.956e^-4	0.969	INTRON CG45002
3L	8572660	3L_8572660_SNP [dm3] 3L_8579560_SNP [dm6]	G	A	4.961e^-4	0.969	SYNONYMOUS_CODING CG43078	TF binding site mE1_TFBS_inv
3R	19083526	3R_19083526_SNP [dm3] 3R_23257804_SNP [dm6]	C	A	4.962e^-4	0.969	UPSTREAM CG13827 INTRON wda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6403998	2R_6403998_SNP [dm3] 2R_10516493_SNP [dm6]	C	T	4.963e^-4	0.969	INTRON lola
2R	18980939	2R_18980939_INS [dm3] 2R_23093416_INS [dm6]	A	AA	4.964e^-4	0.969	INTRON CG9876
3L	15722254	3L_15722254_SNP [dm3] 3L_15729154_SNP [dm6]	G	A	4.964e^-4	0.969	UPSTREAM comm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14422008	2R_14422008_SNP [dm3] 2R_18534503_SNP [dm6]	G	C	4.966e^-4	0.969	NON_SYNONYMOUS_CODING CG10924	TF binding site mE1_TFBS_chinmo
3L	7415869	3L_7415869_INS [dm3] 3L_7422769_INS [dm6]	C	CC	4.972e^-4	0.969	INTERGENIC
X	3161642	X_3161642_SNP [dm3] X_3267609_SNP [dm6]	A	G	4.973e^-4	0.969	INTRON dnc
3R	20741532	3R_20741532_SNP [dm3] 3R_24915810_SNP [dm6]	T	C	4.988e^-4	0.969	UPSTREAM tRNA:CR31416 DOWNSTREAM CG44254 & 1 other INTRON PIG-S	TF binding site mE1_TFBS_cad
3L	13449816	3L_13449816_SNP [dm3] 3L_13456716_SNP [dm6]	C	T	4.997e^-4	0.969	NON_SYNONYMOUS_CODING CG10116 INTRON CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11632999	3L_11632999_SNP [dm3] 3L_11639899_SNP [dm6]	T	C	5.014e^-4	0.969	INTRON CG32091
3L	11633014	3L_11633014_SNP [dm3] 3L_11639914_SNP [dm6]	C	T	5.014e^-4	0.969	INTRON CG32091
2R	7141588	2R_7141588_SNP [dm3] 2R_11254083_SNP [dm6]	C	G	5.020e^-4	0.969	UPSTREAM Cpr47Ea INTERGENIC
3R	20396321	3R_20396321_SNP [dm3] 3R_24570599_SNP [dm6]	T	A	5.027e^-4	0.969	INTRON CG13624
X	12876060	X_12876060_SNP [dm3] X_12982027_SNP [dm6]	C	G	5.028e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14765401	3R_14765401_SNP [dm3] 3R_18939679_SNP [dm6]	C	A	5.031e^-4	0.969	INTRON CG42613
2L	12833932	2L_12833932_SNP [dm3] 2L_12833932_SNP [dm6]	A	C	5.032e^-4	0.969	INTERGENIC
2L	12833935	2L_12833935_SNP [dm3] 2L_12833935_SNP [dm6]	T	G	5.032e^-4	0.969	INTERGENIC
3R	25331505	3R_25331505_SNP [dm3] 3R_29505783_SNP [dm6]	A	C	5.035e^-4	0.969	INTERGENIC
3L	648918	3L_648918_SNP [dm3] 3L_648918_SNP [dm6]	T	G	5.040e^-4	0.969	UTR_5_PRIME Gale	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	852587	3L_852587_SNP [dm3] 3L_852587_SNP [dm6]	G	T	5.043e^-4	0.969	UTR_3_PRIME CG13890 DOWNSTREAM dpr20
3R	11941317	3R_11941317_SNP [dm3] 3R_16115595_SNP [dm6]	T	A	5.045e^-4	0.969	UPSTREAM Sb INTERGENIC	TF binding site mE1_TFBS_cad
3R	15920174	3R_15920174_SNP [dm3] 3R_20094452_SNP [dm6]	G	A	5.057e^-4	0.969	INTERGENIC
2L	9951599	2L_9951599_SNP [dm3] 2L_9951599_SNP [dm6]	C	A	5.062e^-4	0.969	DOWNSTREAM CG13126 INTERGENIC
3L	19218458	3L_19218458_SNP [dm3] 3L_19225358_SNP [dm6]	G	A	5.068e^-4	0.969	INTRON fz2
2L	10255619	2L_10255619_SNP [dm3] 2L_10255619_SNP [dm6]	C	T	5.069e^-4	0.969	DOWNSTREAM Ror & 1 other INTRON CG5676	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	19844722	3R_19844722_SNP [dm3] 3R_24019000_SNP [dm6]	A	C	5.083e^-4	0.97	INTRON KrT95D
X	16216993	X_16216993_SNP [dm3] X_16322960_SNP [dm6]	T	G	5.085e^-4	0.97	UTR_5_PRIME CG9917 UPSTREAM CG32579	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8101981	2L_8101981_DEL [dm3] 2L_8101981_DEL [dm6]	GAG	T	5.091e^-4	0.97	INTRON Bsg	TF binding site mE1_TFBS_sbb
3R	6748409	3R_6748409_SNP [dm3] 3R_10922687_SNP [dm6]	C	T	5.099e^-4	0.97	INTERGENIC
X	14866496	X_14866496_DEL [dm3] X_14972463_DEL [dm6]	GGA	G	5.100e^-4	0.97	INTRON eag
3L	11632825	3L_11632825_SNP [dm3] 3L_11639725_SNP [dm6]	T	C	5.115e^-4	0.97	INTRON CG32091
X	10110216	X_10110216_SNP [dm3] X_10216183_SNP [dm6]	G	A	5.115e^-4	0.97	UTR_3_PRIME l_1_G0230 INTRON CG2962
X	11845560	X_11845560_SNP [dm3] X_11951527_SNP [dm6]	G	T	5.118e^-4	0.97	INTRON cac
3L	10137211	3L_10137211_SNP [dm3] 3L_10144111_SNP [dm6]	T	A	5.120e^-4	0.97	INTERGENIC
3R	6796175	3R_6796175_SNP [dm3] 3R_10970453_SNP [dm6]	T	A	5.129e^-4	0.97	DOWNSTREAM CR45561 INTERGENIC
2R	16547249	2R_16547249_SNP [dm3] 2R_20659744_SNP [dm6]	A	C	5.138e^-4	0.97	INTRON Lrt
2L	518785	2L_518785_SNP [dm3] 2L_518785_SNP [dm6]	G	C	5.141e^-4	0.97	INTRON ush	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3639524	3L_3639524_SNP [dm3] 3L_3639524_SNP [dm6]	T	A	5.141e^-4	0.97	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7703827	X_7703827_SNP [dm3] X_7809794_SNP [dm6]	G	T	5.146e^-4	0.97	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8867593	X_8867593_SNP [dm3] X_8973560_SNP [dm6]	T	C	5.165e^-4	0.971	INTRON rdgA & 2 others
X	10110201	X_10110201_INS [dm3] X_10216168_INS [dm6]	T	TT	5.166e^-4	0.971	UTR_3_PRIME l_1_G0230 INTRON CG2962	TF binding site BDTNP1_TFBS_sna
3L	18551450	3L_18551450_SNP [dm3] 3L_18558350_SNP [dm6]	C	T	5.188e^-4	0.971	INTERGENIC
3L	18294684	3L_18294684_SNP [dm3] 3L_18301584_SNP [dm6]	C	T	5.188e^-4	0.971	UPSTREAM CG13700 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	6098415	2R_6098415_SNP [dm3] 2R_10210910_SNP [dm6]	G	A	5.192e^-4	0.971	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	13297544	3L_13297544_SNP [dm3] 3L_13304444_SNP [dm6]	A	T	5.195e^-4	0.971	DOWNSTREAM CR44555 INTERGENIC

By genomic position
Variant impact
Gene name

CG42404_CT phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results