DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.631e^-13)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	4.9335	0.0849

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1873 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	8089676	2R_8089676_SNP [dm3] 2R_12202171_SNP [dm6]	A	T	7.215e^-9	0.007	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8078685	2R_8078685_SNP [dm3] 2R_12191180_SNP [dm6]	G	A	7.217e^-9	0.007	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
2R	8072884	2R_8072884_INS [dm3] 2R_12185379_INS [dm6]	G	GAGTTACGGGTGCCTCCGTT...	1.146e^-8	0.007	UTR_3_PRIME CG13175 & 1 other UPSTREAM Cyp6g1	regulatory region REDfly_CRMs
2R	8078974	2R_8078974_SNP [dm3] 2R_12191469_SNP [dm6]	G	C	9.110e^-8	0.033	NON_SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
2R	8078684	2R_8078684_SNP [dm3] 2R_12191179_SNP [dm6]	A	G	9.558e^-8	0.033	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
2R	8098232	2R_8098232_SNP [dm3] 2R_12210727_SNP [dm6]	G	A	1.049e^-7	0.033	SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8091687	2R_8091687_SNP [dm3] 2R_12204182_SNP [dm6]	A	G	4.576e^-7	0.123	INTERGENIC
2R	8091181	2R_8091181_SNP [dm3] 2R_12203676_SNP [dm6]	A	C	1.058e^-6	0.248	INTERGENIC
2R	8090564	2R_8090564_SNP [dm3] 2R_12203059_SNP [dm6]	G	A	1.537e^-6	0.32	INTERGENIC
2R	8100594	2R_8100594_SNP [dm3] 2R_12213089_SNP [dm6]	G	A	2.016e^-6	0.378	UPSTREAM Sr-CII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	18990840	3R_18990840_SNP [dm3] 3R_23165118_SNP [dm6]	A	G	2.429e^-6	0.381	INTERGENIC
3R	2991929	3R_2991929_SNP [dm3] 3R_7166207_SNP [dm6]	C	T	2.622e^-6	0.381	INTRON sas
2R	8078861	2R_8078861_SNP [dm3] 2R_12191356_SNP [dm6]	T	C	2.640e^-6	0.381	SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
3R	9124849	3R_9124849_SNP [dm3] 3R_13299127_SNP [dm6]	C	A	3.200e^-6	0.429	SYNONYMOUS_CODING CG8774 UTR_5_PRIME CG8774 DOWNSTREAM CG8773	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	8090560	2R_8090560_SNP [dm3] 2R_12203055_SNP [dm6]	A	T	3.638e^-6	0.432	INTERGENIC
2R	8091158	2R_8091158_SNP [dm3] 2R_12203653_SNP [dm6]	G	C	3.684e^-6	0.432	INTERGENIC
2R	17326783	2R_17326783_SNP [dm3] 2R_21439278_SNP [dm6]	C	A	4.279e^-6	0.447	INTRON Sdc
2R	10073791	2R_10073791_SNP [dm3] 2R_14186286_SNP [dm6]	G	T	4.915e^-6	0.447	SYNONYMOUS_CODING CG30069	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17623680	2R_17623680_SNP [dm3] 2R_21736175_SNP [dm6]	C	G	5.090e^-6	0.447	INTERGENIC
2R	8101879	2R_8101879_SNP [dm3] 2R_12214374_SNP [dm6]	G	A	5.133e^-6	0.447	UTR_3_PRIME CG13171
2R	8092269	2R_8092269_SNP [dm3] 2R_12204764_SNP [dm6]	T	A	5.152e^-6	0.447	INTERGENIC
2R	8070658	2R_8070658_SNP [dm3] 2R_12183153_SNP [dm6]	T	G	5.985e^-6	0.447	NON_SYNONYMOUS_CODING CG13175 UTR_5_PRIME CG33964 DOWNSTREAM wash & 1 other	TF binding site mE1_TFBS_sens
X	15273585	X_15273585_SNP [dm3] X_15379552_SNP [dm6]	G	T	6.075e^-6	0.447	UPSTREAM acj6 DOWNSTREAM CG9164 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8101919	2R_8101919_SNP [dm3] 2R_12214414_SNP [dm6]	T	C	6.249e^-6	0.447	DOWNSTREAM CG13171 INTERGENIC
2R	8101905	2R_8101905_SNP [dm3] 2R_12214400_SNP [dm6]	T	G	6.257e^-6	0.447	DOWNSTREAM CG13171 INTERGENIC
2R	15116706	2R_15116706_SNP [dm3] 2R_19229201_SNP [dm6]	G	A	6.440e^-6	0.447	DOWNSTREAM CG7137 INTRON cora	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	8092306	2R_8092306_SNP [dm3] 2R_12204801_SNP [dm6]	C	T	6.769e^-6	0.447	INTERGENIC
2R	8077982	2R_8077982_SNP [dm3] 2R_12190477_SNP [dm6]	A	G	7.042e^-6	0.447	UPSTREAM Cyp6t3 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	15116732	2R_15116732_SNP [dm3] 2R_19229227_SNP [dm6]	G	A	7.472e^-6	0.447	DOWNSTREAM CG7137 INTRON cora	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14154208	X_14154208_SNP [dm3] X_14260175_SNP [dm6]	C	A	8.300e^-6	0.447	INTERGENIC
3R	26575911	3R_26575911_DEL [dm3] 3R_30750189_DEL [dm6]	TCCTGTTT	T	8.404e^-6	0.447	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14154195	X_14154195_SNP [dm3] X_14260162_SNP [dm6]	C	T	8.547e^-6	0.447	INTERGENIC
3L	12357305	3L_12357305_DEL [dm3] 3L_12364205_DEL [dm6]	GATAACAGTT	G	8.687e^-6	0.447	INTERGENIC
3L	12929607	3L_12929607_SNP [dm3] 3L_12936507_SNP [dm6]	C	G	8.701e^-6	0.447	INTERGENIC
X	14154166	X_14154166_SNP [dm3] X_14260133_SNP [dm6]	A	G	8.754e^-6	0.447	INTERGENIC
2R	8095372	2R_8095372_INS [dm3] 2R_12207867_INS [dm6]	T	TT	8.770e^-6	0.447	DOWNSTREAM CR45276 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8079280	2R_8079280_SNP [dm3] 2R_12191775_SNP [dm6]	G	A	8.827e^-6	0.447	SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
X	14154213	X_14154213_SNP [dm3] X_14260180_SNP [dm6]	A	T	1.037e^-5	0.484	INTERGENIC
X	16674396	X_16674396_SNP [dm3] X_16780363_SNP [dm6]	C	G	1.038e^-5	0.484	INTRON if	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5518333	3L_5518333_SNP [dm3] 3L_5525233_SNP [dm6]	G	T	1.043e^-5	0.484	INTRON Lkr
2L	3819600	2L_3819600_SNP [dm3] 2L_3819600_SNP [dm6]	A	G	1.105e^-5	0.484	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13132036	2R_13132036_SNP [dm3] 2R_17244531_SNP [dm6]	T	A	1.142e^-5	0.484	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8101945	2R_8101945_SNP [dm3] 2R_12214440_SNP [dm6]	G	T	1.164e^-5	0.484	DOWNSTREAM CG13171 INTERGENIC
2R	8085097	2R_8085097_SNP [dm3] 2R_12197592_SNP [dm6]	T	C	1.181e^-5	0.484	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8091180	2R_8091180_SNP [dm3] 2R_12203675_SNP [dm6]	C	A	1.181e^-5	0.484	INTERGENIC
X	14154154	X_14154154_INS [dm3] X_14260121_INS [dm6]	T	TCTGAATCAAAAATGCTTGT...	1.196e^-5	0.484	INTERGENIC
3R	8988335	3R_8988335_SNP [dm3] 3R_13162613_SNP [dm6]	C	G	1.213e^-5	0.484	NON_SYNONYMOUS_CODING timeout
X	14154204	X_14154204_SNP [dm3] X_14260171_SNP [dm6]	T	G	1.307e^-5	0.489	INTERGENIC
2R	8061931	2R_8061931_SNP [dm3] 2R_12174426_SNP [dm6]	C	A	1.322e^-5	0.489	UPSTREAM Cct5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5002002	3L_5002002_SNP [dm3] 3L_5002002_SNP [dm6]	G	A	1.327e^-5	0.489	INTRON Con	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9114055	3R_9114055_SNP [dm3] 3R_13288333_SNP [dm6]	A	T	1.338e^-5	0.489	INTRON CG15887	TF binding site mE1_TFBS_inv
3R	18784574	3R_18784574_SNP [dm3] 3R_22958852_SNP [dm6]	T	G	1.397e^-5	0.489	INTRON klg	TF binding site mE1_TFBS_cad
2R	8077706	2R_8077706_SNP [dm3] 2R_12190201_SNP [dm6]	G	T	1.405e^-5	0.489	SYNONYMOUS_CODING Cyp6g2 UPSTREAM Cyp6t3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3791539	X_3791539_SNP [dm3] X_3897506_SNP [dm6]	G	T	1.409e^-5	0.489	INTRON CG42541
X	11844826	X_11844826_SNP [dm3] X_11950793_SNP [dm6]	G	C	1.474e^-5	0.503	INTRON cac
X	14154141	X_14154141_SNP [dm3] X_14260108_SNP [dm6]	T	G	1.661e^-5	0.527	INTERGENIC
2R	6792245	2R_6792245_SNP [dm3] 2R_10904740_SNP [dm6]	C	T	1.664e^-5	0.527	SYNONYMOUS_CODING CG12943 UTR_3_PRIME CG12943
2L	14628324	2L_14628324_SNP [dm3] 2L_14628324_SNP [dm6]	C	A	1.700e^-5	0.527	INTRON osp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12831910	2L_12831910_SNP [dm3] 2L_12831910_SNP [dm6]	A	T	1.721e^-5	0.527	INTERGENIC
2R	8082493	2R_8082493_SNP [dm3] 2R_12194988_SNP [dm6]	T	A	1.727e^-5	0.527	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
2R	8087114	2R_8087114_SNP [dm3] 2R_12199609_SNP [dm6]	A	G	1.727e^-5	0.527	UPSTREAM CG8858 & 1 other DOWNSTREAM snoRNA:Me28S-C3420a INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	11772626	2L_11772626_SNP [dm3] 2L_11772626_SNP [dm6]	G	C	1.810e^-5	0.527	INTERGENIC
3R	16821132	3R_16821132_SNP [dm3] 3R_20995410_SNP [dm6]	C	G	1.825e^-5	0.527	INTRON Calx	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6334848	2L_6334848_SNP [dm3] 2L_6334848_SNP [dm6]	A	C	1.831e^-5	0.527	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7153581	2L_7153581_SNP [dm3] 2L_7153581_SNP [dm6]	G	C	1.855e^-5	0.527	INTRON Pvf3
2R	8079175	2R_8079175_SNP [dm3] 2R_12191670_SNP [dm6]	T	G	1.855e^-5	0.527	NON_SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
2L	5907343	2L_5907343_SNP [dm3] 2L_5907343_SNP [dm6]	T	C	1.931e^-5	0.534	INTRON bchs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	12831011	2L_12831011_SNP [dm3] 2L_12831011_SNP [dm6]	A	T	1.937e^-5	0.534	INTERGENIC
3R	22879684	3R_22879684_SNP [dm3] 3R_27053962_SNP [dm6]	T	C	2.057e^-5	0.543	INTRON RYa-R
3L	12357421	3L_12357421_SNP [dm3] 3L_12364321_SNP [dm6]	G	A	2.070e^-5	0.543	INTERGENIC
3L	12357296	3L_12357296_DEL [dm3] 3L_12364196_DEL [dm6]	GGACAC	G	2.073e^-5	0.543	INTERGENIC
2R	8078006	2R_8078006_INS [dm3] 2R_12190501_INS [dm6]	G	GG	2.106e^-5	0.543	UPSTREAM Cyp6t3 & 1 other INTERGENIC
2R	17345220	2R_17345220_SNP [dm3] 2R_21457715_SNP [dm6]	G	A	2.113e^-5	0.543	INTRON Sdc
2R	10083055	2R_10083055_SNP [dm3] 2R_14195550_SNP [dm6]	G	T	2.249e^-5	0.567	SYNONYMOUS_CODING CG30069	TF binding site BDTNP1_TFBS_twi
2R	8090749	2R_8090749_SNP [dm3] 2R_12203244_SNP [dm6]	T	A	2.267e^-5	0.567	INTERGENIC
2L	13941122	2L_13941122_SNP [dm3] 2L_13941122_SNP [dm6]	G	A	2.381e^-5	0.58	INTRON Ance-3
3L	12357247	3L_12357247_SNP [dm3] 3L_12364147_SNP [dm6]	T	A	2.389e^-5	0.58	INTERGENIC
2R	10072916	2R_10072916_SNP [dm3] 2R_14185411_SNP [dm6]	C	G	2.413e^-5	0.58	UTR_5_PRIME CG30069	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15273574	X_15273574_SNP [dm3] X_15379541_SNP [dm6]	A	G	2.559e^-5	0.607	UPSTREAM acj6 DOWNSTREAM CG9164 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14880380	2R_14880380_SNP [dm3] 2R_18992875_SNP [dm6]	A	G	2.612e^-5	0.612	INTRON tn
2R	8078014	2R_8078014_SNP [dm3] 2R_12190509_SNP [dm6]	T	C	2.695e^-5	0.617	UPSTREAM Cyp6t3 & 1 other INTERGENIC
2R	8085156	2R_8085156_SNP [dm3] 2R_12197651_SNP [dm6]	A	G	2.706e^-5	0.617	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22983234	3R_22983234_SNP [dm3] 3R_27157512_SNP [dm6]	A	T	2.738e^-5	0.617	UTR_3_PRIME Men-b UPSTREAM grass	TF binding site mE1_TFBS_Trl
2R	8097749	2R_8097749_SNP [dm3] 2R_12210244_SNP [dm6]	T	C	2.821e^-5	0.617	INTRON Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12357338	3L_12357338_SNP [dm3] 3L_12364238_SNP [dm6]	A	T	2.889e^-5	0.617	INTERGENIC
X	14154236	X_14154236_SNP [dm3] X_14260203_SNP [dm6]	C	T	2.927e^-5	0.617	INTERGENIC
3L	12357323	3L_12357323_SNP [dm3] 3L_12364223_SNP [dm6]	G	T	2.940e^-5	0.617	INTERGENIC
3L	10780345	3L_10780345_SNP [dm3] 3L_10787245_SNP [dm6]	C	T	2.947e^-5	0.617	INTERGENIC
3R	25256581	3R_25256581_SNP [dm3] 3R_29430859_SNP [dm6]	G	A	2.971e^-5	0.617	INTRON Ptp99A
3R	8988291	3R_8988291_INS [dm3] 3R_13162569_INS [dm6]	G	TGGA	2.982e^-5	0.617
2L	9058129	2L_9058129_SNP [dm3] 2L_9058129_SNP [dm6]	T	C	3.007e^-5	0.617	INTRON CG31708
2R	14883274	2R_14883274_SNP [dm3] 2R_18995769_SNP [dm6]	T	G	3.040e^-5	0.617	DOWNSTREAM snoRNA:abba-a INTRON tn
2L	1548815	2L_1548815_SNP [dm3] 2L_1548815_SNP [dm6]	C	T	3.062e^-5	0.617	INTERGENIC
2R	8079569	2R_8079569_SNP [dm3] 2R_12192064_SNP [dm6]	A	T	3.099e^-5	0.618	SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
3R	9078765	3R_9078765_SNP [dm3] 3R_13253043_SNP [dm6]	C	T	3.218e^-5	0.632	INTRON Ace
3R	26581271	3R_26581271_SNP [dm3] 3R_30755549_SNP [dm6]	T	A	3.238e^-5	0.632	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14142166	2R_14142166_SNP [dm3] 2R_18254661_SNP [dm6]	C	T	3.271e^-5	0.632	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7449682	2L_7449682_SNP [dm3] 2L_7449682_SNP [dm6]	A	T	3.359e^-5	0.643	UTR_5_PRIME santa-maria INTRON santa-maria
2R	7995313	2R_7995313_SNP [dm3] 2R_12107808_SNP [dm6]	G	T	3.397e^-5	0.644	INTRON jeb
3R	9031423	3R_9031423_SNP [dm3] 3R_13205701_SNP [dm6]	G	T	3.443e^-5	0.646	INTERGENIC
2L	9309770	2L_9309770_SNP [dm3] 2L_9309770_SNP [dm6]	C	T	3.571e^-5	0.663	INTERGENIC
3L	12357220	3L_12357220_SNP [dm3] 3L_12364120_SNP [dm6]	T	C	3.663e^-5	0.669	INTERGENIC
2L	12827985	2L_12827985_SNP [dm3] 2L_12827985_SNP [dm6]	T	C	3.672e^-5	0.669	INTERGENIC
2R	8101969	2R_8101969_INS [dm3] 2R_12214464_INS [dm6]	A	ATGTA	3.906e^-5	0.694	DOWNSTREAM CG13171 INTERGENIC
2R	8105491	2R_8105491_SNP [dm3] 2R_12217986_SNP [dm6]	A	C	3.975e^-5	0.694	INTERGENIC
2R	8087580	2R_8087580_SNP [dm3] 2R_12200075_SNP [dm6]	A	G	4.030e^-5	0.694	UPSTREAM snoRNA:Me28S-C3420b & 1 other INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	3591921	3R_3591921_SNP [dm3] 3R_7766199_SNP [dm6]	A	C	4.127e^-5	0.694	INTERGENIC	TF binding site mE1_TFBS_inv
2R	11901378	2R_11901378_SNP [dm3] 2R_16013873_SNP [dm6]	C	A	4.136e^-5	0.694	UTR_3_PRIME Prosbeta1 DOWNSTREAM CG8389
2R	8101160	2R_8101160_SNP [dm3] 2R_12213655_SNP [dm6]	G	T	4.160e^-5	0.694	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9045566	2L_9045566_SNP [dm3] 2L_9045566_SNP [dm6]	T	C	4.171e^-5	0.694	INTERGENIC
2L	15134617	2L_15134617_SNP [dm3] 2L_15134617_SNP [dm6]	G	T	4.177e^-5	0.694	INTERGENIC
2R	9369700	2R_9369700_SNP [dm3] 2R_13482195_SNP [dm6]	C	G	4.288e^-5	0.694	INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	18691141	3L_18691141_SNP [dm3] 3L_18698041_SNP [dm6]	A	T	4.312e^-5	0.694	INTRON Dic4
3R	26581259	3R_26581259_SNP [dm3] 3R_30755537_SNP [dm6]	G	A	4.396e^-5	0.694	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12929614	3L_12929614_SNP [dm3] 3L_12936514_SNP [dm6]	G	A	4.509e^-5	0.694	INTERGENIC
3R	15185979	3R_15185979_SNP [dm3] 3R_19360257_SNP [dm6]	T	A	4.557e^-5	0.694	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18036861	2R_18036861_SNP [dm3] 2R_22149356_SNP [dm6]	G	A	4.559e^-5	0.694	INTRON a
2L	9045486	2L_9045486_SNP [dm3] 2L_9045486_SNP [dm6]	G	A	4.563e^-5	0.694	INTERGENIC
2R	8103870	2R_8103870_SNP [dm3] 2R_12216365_SNP [dm6]	A	T	4.576e^-5	0.694	INTERGENIC
2R	11903824	2R_11903824_SNP [dm3] 2R_16016319_SNP [dm6]	C	T	4.588e^-5	0.694	DOWNSTREAM Rrp42 INTRON CG8397	TF binding site mE1_TFBS_sens
3L	14304554	3L_14304554_DEL [dm3] 3L_14311454_DEL [dm6]	TT	T	4.599e^-5	0.694	INTRON fz
3R	18987826	3R_18987826_SNP [dm3] 3R_23162104_SNP [dm6]	A	C	4.607e^-5	0.694	UPSTREAM CG13829 INTERGENIC
2R	8100454	2R_8100454_SNP [dm3] 2R_12212949_SNP [dm6]	G	T	4.643e^-5	0.694	UPSTREAM Sr-CII INTERGENIC
2R	8084645	2R_8084645_SNP [dm3] 2R_12197140_SNP [dm6]	G	A	4.732e^-5	0.694	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
2R	8101390	2R_8101390_SNP [dm3] 2R_12213885_SNP [dm6]	A	C	4.797e^-5	0.694	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	8912437	3L_8912437_SNP [dm3] 3L_8919337_SNP [dm6]	T	C	4.813e^-5	0.694	INTRON Tsp66E
2R	11903821	2R_11903821_SNP [dm3] 2R_16016316_SNP [dm6]	A	G	4.819e^-5	0.694	DOWNSTREAM Rrp42 INTRON CG8397	TF binding site mE1_TFBS_sens
2R	8093965	2R_8093965_SNP [dm3] 2R_12206460_SNP [dm6]	G	C	4.827e^-5	0.694	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	13825555	X_13825555_SNP [dm3] X_13931522_SNP [dm6]	A	G	4.832e^-5	0.694	INTRON mamo
2R	8091164	2R_8091164_SNP [dm3] 2R_12203659_SNP [dm6]	G	A	4.837e^-5	0.694	INTERGENIC
2R	8101975	2R_8101975_SNP [dm3] 2R_12214470_SNP [dm6]	G	A	4.846e^-5	0.694	DOWNSTREAM CG13171 INTERGENIC
X	14678799	X_14678799_DEL [dm3] X_14784766_DEL [dm6]	TTCCTTACATGTAT...	CG	4.965e^-5	0.697	UTR_3_PRIME Ag5r UPSTREAM Ag5r2 DOWNSTREAM Ag5r
3L	3872291	3L_3872291_SNP [dm3] 3L_3872291_SNP [dm6]	G	C	4.998e^-5	0.697	INTERGENIC
2R	15765552	2R_15765552_SNP [dm3] 2R_19878047_SNP [dm6]	C	A	5.000e^-5	0.697	DOWNSTREAM CG13872 INTERGENIC
2R	10892938	2R_10892938_SNP [dm3] 2R_15005433_SNP [dm6]	C	G	5.024e^-5	0.697	INTERGENIC
3R	13610673	3R_13610673_SNP [dm3] 3R_17784951_SNP [dm6]	A	T	5.052e^-5	0.697	INTRON CG43102
2R	8032968	2R_8032968_DEL [dm3] 2R_12145463_DEL [dm6]	AA	A	5.126e^-5	0.702	UPSTREAM CG13178 & 1 other DOWNSTREAM CG8878 INTERGENIC
2L	13568509	2L_13568509_SNP [dm3] 2L_13568509_SNP [dm6]	G	A	5.252e^-5	0.708	INTRON kuz
2R	14880371	2R_14880371_SNP [dm3] 2R_18992866_SNP [dm6]	A	G	5.272e^-5	0.708	INTRON tn
3R	26792211	3R_26792211_DEL [dm3] 3R_30966489_DEL [dm6]	GG	G	5.295e^-5	0.708	INTERGENIC
X	14154168	X_14154168_SNP [dm3] X_14260135_SNP [dm6]	A	G	5.358e^-5	0.708	INTERGENIC
2R	13132037	2R_13132037_SNP [dm3] 2R_17244532_SNP [dm6]	T	A	5.372e^-5	0.708	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13948415	2L_13948415_SNP [dm3] 2L_13948415_SNP [dm6]	A	T	5.397e^-5	0.708	UPSTREAM CG16884 INTRON Ance-3
2R	8021638	2R_8021638_SNP [dm3] 2R_12134133_SNP [dm6]	A	G	5.501e^-5	0.712	INTERGENIC
2R	8097748	2R_8097748_SNP [dm3] 2R_12210243_SNP [dm6]	T	A	5.518e^-5	0.712	INTRON Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19277469	2R_19277469_SNP [dm3] 2R_23389946_SNP [dm6]	A	G	5.547e^-5	0.712	SPLICE_SITE_REGION CG3530 DOWNSTREAM eIF2B-delta INTRON CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17623689	2R_17623689_SNP [dm3] 2R_21736184_SNP [dm6]	T	A	5.679e^-5	0.712	INTERGENIC
3L	6773241	3L_6773241_SNP [dm3] 3L_6780141_SNP [dm6]	G	A	5.695e^-5	0.712	INTERGENIC
2R	7402643	2R_7402643_SNP [dm3] 2R_11515138_SNP [dm6]	C	A	5.708e^-5	0.712	INTERGENIC
3R	21746625	3R_21746625_DEL [dm3] 3R_25920903_DEL [dm6]	TGATAAGTATGAATTAGTTC...	C	5.762e^-5	0.712	UTR_3_PRIME CG42235 DOWNSTREAM CG14546
3L	14367875	3L_14367875_SNP [dm3] 3L_14374775_SNP [dm6]	A	C	5.770e^-5	0.712	INTERGENIC
2R	19277419	2R_19277419_SNP [dm3] 2R_23389896_SNP [dm6]	G	A	5.773e^-5	0.712	SYNONYMOUS_CODING CG3530 DOWNSTREAM eIF2B-delta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13610699	3R_13610699_SNP [dm3] 3R_17784977_SNP [dm6]	G	A	5.828e^-5	0.714	INTRON CG43102
2R	8077957	2R_8077957_SNP [dm3] 2R_12190452_SNP [dm6]	A	G	5.982e^-5	0.727	UPSTREAM Cyp6t3 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	18990903	3R_18990903_SNP [dm3] 3R_23165181_SNP [dm6]	G	T	6.016e^-5	0.727	INTERGENIC
X	14096033	X_14096033_SNP [dm3] X_14202000_SNP [dm6]	C	A	6.045e^-5	0.727	SYNONYMOUS_CODING l_1_G0007	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8105220	2R_8105220_SNP [dm3] 2R_12217715_SNP [dm6]	G	A	6.163e^-5	0.736	INTERGENIC	TF binding site mE1_TFBS_inv
3L	19215884	3L_19215884_SNP [dm3] 3L_19222784_SNP [dm6]	C	G	6.222e^-5	0.739	INTRON fz2
3L	16426421	3L_16426421_SNP [dm3] 3L_16433321_SNP [dm6]	C	A	6.278e^-5	0.739	INTRON CG33158 & 1 other
3R	16820974	3R_16820974_SNP [dm3] 3R_20995252_SNP [dm6]	C	T	6.372e^-5	0.739	INTRON Calx	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8097803	2R_8097803_SNP [dm3] 2R_12210298_SNP [dm6]	C	T	6.378e^-5	0.739	SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8060142	2R_8060142_SNP [dm3] 2R_12172637_SNP [dm6]	G	A	6.382e^-5	0.739	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2L	12831937	2L_12831937_SNP [dm3] 2L_12831937_SNP [dm6]	G	A	6.528e^-5	0.745	INTERGENIC
2R	19277830	2R_19277830_SNP [dm3] 2R_23390307_SNP [dm6]	G	T	6.568e^-5	0.745	SPLICE_SITE_REGION CG3530 SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12357469	3L_12357469_SNP [dm3] 3L_12364369_SNP [dm6]	C	T	6.576e^-5	0.745	INTERGENIC
3R	21746799	3R_21746799_SNP [dm3] 3R_25921077_SNP [dm6]	T	G	6.620e^-5	0.745	UTR_3_PRIME CG14546 DOWNSTREAM CG42235
2R	8094113	2R_8094113_SNP [dm3] 2R_12206608_SNP [dm6]	A	G	6.646e^-5	0.745	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	19883648	3R_19883648_SNP [dm3] 3R_24057926_SNP [dm6]	A	C	6.711e^-5	0.745	UPSTREAM SMC1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_ttk
2R	11904748	2R_11904748_SNP [dm3] 2R_16017243_SNP [dm6]	T	A	6.716e^-5	0.745	UPSTREAM CG8399 & 1 other INTERGENIC
3R	24251051	3R_24251051_SNP [dm3] 3R_28425329_SNP [dm6]	A	C	6.750e^-5	0.745	INTRON beat-VI
2L	15038960	2L_15038960_SNP [dm3] 2L_15038960_SNP [dm6]	T	A	6.799e^-5	0.746	UPSTREAM Su_H_ & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	6077238	2R_6077238_SNP [dm3] 2R_10189733_SNP [dm6]	G	A	6.858e^-5	0.748	INTRON KCNQ
2R	8090744	2R_8090744_SNP [dm3] 2R_12203239_SNP [dm6]	A	G	6.988e^-5	0.754	INTERGENIC
3R	9209124	3R_9209124_SNP [dm3] 3R_13383402_SNP [dm6]	T	C	7.003e^-5	0.754	UTR_5_PRIME Droj2 INTRON Droj2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	12878436	3L_12878436_SNP [dm3] 3L_12885336_SNP [dm6]	A	T	7.034e^-5	0.754	SYNONYMOUS_CODING CG14120	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12357316	3L_12357316_SNP [dm3] 3L_12364216_SNP [dm6]	A	C	7.082e^-5	0.755	INTERGENIC
2L	17834211	2L_17834211_SNP [dm3] 2L_17834211_SNP [dm6]	A	T	7.139e^-5	0.756	INTRON CadN2	TF binding site mE1_TFBS_HSA
2R	8084529	2R_8084529_SNP [dm3] 2R_12197024_SNP [dm6]	T	C	7.213e^-5	0.76	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
2L	14628430	2L_14628430_SNP [dm3] 2L_14628430_SNP [dm6]	T	G	7.310e^-5	0.76	INTRON osp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8068113	2R_8068113_SNP [dm3] 2R_12180608_SNP [dm6]	T	G	7.379e^-5	0.76	UPSTREAM wash & 1 other DOWNSTREAM CR45264 INTRON wash	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8708456	2L_8708456_SNP [dm3] 2L_8708456_SNP [dm6]	A	G	7.397e^-5	0.76	DOWNSTREAM CG9314 INTRON Hnf4	TF binding site mE1_TFBS_HSA
2R	17932866	2R_17932866_SNP [dm3] 2R_22045361_SNP [dm6]	G	A	7.400e^-5	0.76	INTERGENIC
2R	8090760	2R_8090760_SNP [dm3] 2R_12203255_SNP [dm6]	C	T	7.494e^-5	0.76	INTERGENIC
2R	8101995	2R_8101995_SNP [dm3] 2R_12214490_SNP [dm6]	C	T	7.504e^-5	0.76	DOWNSTREAM CG13171 INTERGENIC
2R	8090739	2R_8090739_SNP [dm3] 2R_12203234_SNP [dm6]	G	A	7.512e^-5	0.76	INTERGENIC
2R	8097777	2R_8097777_SNP [dm3] 2R_12210272_SNP [dm6]	C	T	7.575e^-5	0.76	NON_SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17846136	2R_17846136_SNP [dm3] 2R_21958631_SNP [dm6]	A	T	7.578e^-5	0.76	INTERGENIC
3R	23889941	3R_23889941_SNP [dm3] 3R_28064219_SNP [dm6]	C	A	7.708e^-5	0.769	INTRON CG34362
2L	5641861	2L_5641861_SNP [dm3] 2L_5641861_SNP [dm6]	A	G	7.798e^-5	0.769	SYNONYMOUS_CODING CG31646 UPSTREAM mir-963 & 1 other DOWNSTREAM mir-959 & 3 others
3L	14373729	3L_14373729_DEL [dm3] 3L_14380629_DEL [dm6]	GG	G	7.808e^-5	0.769	INTERGENIC
2L	14628817	2L_14628817_SNP [dm3] 2L_14628817_SNP [dm6]	T	C	7.878e^-5	0.769	INTRON osp
3L	12357488	3L_12357488_SNP [dm3] 3L_12364388_SNP [dm6]	C	T	7.881e^-5	0.769	INTERGENIC
3R	21123571	3R_21123571_SNP [dm3] 3R_25297849_SNP [dm6]	T	G	7.951e^-5	0.769	UPSTREAM CG31097 DOWNSTREAM CG31288 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8097753	2R_8097753_SNP [dm3] 2R_12210248_SNP [dm6]	C	T	7.973e^-5	0.769	INTRON Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8060123	2R_8060123_SNP [dm3] 2R_12172618_SNP [dm6]	A	G	7.992e^-5	0.769	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7842807	2R_7842807_SNP [dm3] 2R_11955302_SNP [dm6]	G	A	8.070e^-5	0.772	INTRON CG13188
2R	3754934	2R_3754934_SNP [dm3] 2R_7867429_SNP [dm6]	T	A	8.116e^-5	0.773	INTRON Dgk
3L	18745915	3L_18745915_SNP [dm3] 3L_18752815_SNP [dm6]	C	T	8.351e^-5	0.791	SYNONYMOUS_CODING ftz-f1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14965594	X_14965594_SNP [dm3] X_15071561_SNP [dm6]	G	T	8.425e^-5	0.794	UTR_3_PRIME Lsd-2
2R	8101974	2R_8101974_SNP [dm3] 2R_12214469_SNP [dm6]	T	A	8.507e^-5	0.794	DOWNSTREAM CG13171 INTERGENIC
2L	20124870	2L_20124870_SNP [dm3] 2L_20124870_SNP [dm6]	T	A	8.520e^-5	0.794	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12689629	2L_12689629_SNP [dm3] 2L_12689629_SNP [dm6]	A	G	8.572e^-5	0.794	DOWNSTREAM CG5525 INTERGENIC	TF binding site mE1_TFBS_inv
3L	6989385	3L_6989385_SNP [dm3] 3L_6996285_SNP [dm6]	T	A	8.695e^-5	0.794	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_zfh1
3R	21746294	3R_21746294_SNP [dm3] 3R_25920572_SNP [dm6]	T	A	8.735e^-5	0.794	DOWNSTREAM CG14546 INTRON CG42235
2R	8093874	2R_8093874_SNP [dm3] 2R_12206369_SNP [dm6]	G	A	8.857e^-5	0.794	EXON CR45276	TF binding site mE1_TFBS_cad
2L	10133277	2L_10133277_SNP [dm3] 2L_10133277_SNP [dm6]	A	T	8.902e^-5	0.794	INTRON CG44153
2R	8097726	2R_8097726_SNP [dm3] 2R_12210221_SNP [dm6]	C	A	8.946e^-5	0.794	INTRON Sr-CII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19138670	2R_19138670_SNP [dm3] 2R_23251147_SNP [dm6]	A	G	8.963e^-5	0.794	INTERGENIC
2L	14337393	2L_14337393_SNP [dm3] 2L_14337393_SNP [dm6]	C	A	8.969e^-5	0.794	UPSTREAM CG15286 INTRON CG33090
2L	17438872	2L_17438872_SNP [dm3] 2L_17438872_SNP [dm6]	G	T	8.988e^-5	0.794	UTR_3_PRIME dl INTRON dl
3R	9114273	3R_9114273_SNP [dm3] 3R_13288551_SNP [dm6]	G	A	8.997e^-5	0.794	INTRON CG15887	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26572162	3R_26572162_SNP [dm3] 3R_30746440_SNP [dm6]	A	G	9.021e^-5	0.794	UPSTREAM Npc2h DOWNSTREAM CR43238 INTERGENIC	TF binding site mE1_TFBS_cad
3L	12346886	3L_12346886_SNP [dm3] 3L_12353786_SNP [dm6]	C	T	9.022e^-5	0.794	INTERGENIC
3R	18784568	3R_18784568_SNP [dm3] 3R_22958846_SNP [dm6]	T	A	9.165e^-5	0.801	INTRON klg	TF binding site mE1_TFBS_cad
2R	1714034	2R_1714034_INS [dm3] 2R_5826529_INS [dm6]	G	GAATGG	9.185e^-5	0.801	INTRON dpr12	TF binding site mE1_TFBS_HSA
3R	9216135	3R_9216135_SNP [dm3] 3R_13390413_SNP [dm6]	T	A	9.286e^-5	0.806	INTRON CCHa2
2L	9057917	2L_9057917_SNP [dm3] 2L_9057917_SNP [dm6]	T	G	9.369e^-5	0.81	INTRON CG31708
2R	8101389	2R_8101389_SNP [dm3] 2R_12213884_SNP [dm6]	A	G	9.504e^-5	0.818	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8090624	2R_8090624_SNP [dm3] 2R_12203119_SNP [dm6]	G	A	9.605e^-5	0.822	INTERGENIC
3R	9147234	3R_9147234_SNP [dm3] 3R_13321512_SNP [dm6]	A	G	9.748e^-5	0.826	INTERGENIC
2L	17443442	2L_17443442_SNP [dm3] 2L_17443442_SNP [dm6]	C	A	9.830e^-5	0.826	INTRON dl
3L	18190090	3L_18190090_SNP [dm3] 3L_18196990_SNP [dm6]	G	A	9.837e^-5	0.826	DOWNSTREAM CR45234 INTERGENIC
2L	9965324	2L_9965324_SNP [dm3] 2L_9965324_SNP [dm6]	T	A	9.847e^-5	0.826	INTRON Dref	TF binding site mE1_TFBS_sens
3R	24052661	3R_24052661_SNP [dm3] 3R_28226939_SNP [dm6]	A	T	9.869e^-5	0.826	INTRON CG34354
2L	15641504	2L_15641504_SNP [dm3] 2L_15641504_SNP [dm6]	T	A	1.008e^-4	0.826	INTERGENIC
3R	4446966	3R_4446966_SNP [dm3] 3R_8621244_SNP [dm6]	T	C	1.009e^-4	0.826	INTRON 5-HT2B
3L	12770439	3L_12770439_SNP [dm3] 3L_12777339_SNP [dm6]	A	G	1.013e^-4	0.826	SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12827921	2L_12827921_SNP [dm3] 2L_12827921_SNP [dm6]	A	G	1.016e^-4	0.826	INTERGENIC
2R	8085184	2R_8085184_SNP [dm3] 2R_12197679_SNP [dm6]	A	C	1.016e^-4	0.826	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9067436	3R_9067436_DEL [dm3] 3R_13241714_DEL [dm6]	GCAGAACTTTAACTCAACTT...	G	1.028e^-4	0.826	INTRON Ace
2R	11904736	2R_11904736_SNP [dm3] 2R_16017231_SNP [dm6]	G	C	1.045e^-4	0.826	UPSTREAM CG8399 & 1 other INTERGENIC
3L	1684494	3L_1684494_SNP [dm3] 3L_1684494_SNP [dm6]	C	T	1.048e^-4	0.826	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3L	12357452	3L_12357452_SNP [dm3] 3L_12364352_SNP [dm6]	A	C	1.049e^-4	0.826	INTERGENIC
2R	8090765	2R_8090765_SNP [dm3] 2R_12203260_SNP [dm6]	C	T	1.051e^-4	0.826	INTERGENIC
2L	15039331	2L_15039331_SNP [dm3] 2L_15039331_SNP [dm6]	A	G	1.055e^-4	0.826	UPSTREAM Su_H_ & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
2R	8097738	2R_8097738_SNP [dm3] 2R_12210233_SNP [dm6]	A	C	1.055e^-4	0.826	INTRON Sr-CII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14367854	3L_14367854_SNP [dm3] 3L_14374754_SNP [dm6]	T	C	1.056e^-4	0.826	INTERGENIC
3R	8988821	3R_8988821_SNP [dm3] 3R_13163099_SNP [dm6]	G	A	1.056e^-4	0.826	SYNONYMOUS_CODING timeout
2R	8101378	2R_8101378_SNP [dm3] 2R_12213873_SNP [dm6]	G	A	1.058e^-4	0.826	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9511197	2L_9511197_SNP [dm3] 2L_9511197_SNP [dm6]	A	G	1.066e^-4	0.826	INTRON CG33298
2R	8021436	2R_8021436_SNP [dm3] 2R_12133931_SNP [dm6]	G	T	1.067e^-4	0.826	INTERGENIC
2R	11902331	2R_11902331_SNP [dm3] 2R_16014826_SNP [dm6]	G	A	1.070e^-4	0.826	UPSTREAM Rrp42 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	8077937	2R_8077937_SNP [dm3] 2R_12190432_SNP [dm6]	T	C	1.087e^-4	0.826	UPSTREAM Cyp6t3 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	7055339	2L_7055339_SNP [dm3] 2L_7055339_SNP [dm6]	T	C	1.092e^-4	0.826	UTR_3_PRIME milt UPSTREAM Mnn1 DOWNSTREAM milt	TF binding site BDTNP1_TFBS_dl
2R	8097727	2R_8097727_SNP [dm3] 2R_12210222_SNP [dm6]	A	C	1.092e^-4	0.826	INTRON Sr-CII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21098076	3R_21098076_SNP [dm3] 3R_25272354_SNP [dm6]	T	G	1.093e^-4	0.826	NON_SYNONYMOUS_CODING CG11891 UTR_3_PRIME CG11889 DOWNSTREAM CG11889	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11773832	2L_11773832_SNP [dm3] 2L_11773832_SNP [dm6]	G	A	1.101e^-4	0.826	INTERGENIC
3R	22983147	3R_22983147_SNP [dm3] 3R_27157425_SNP [dm6]	A	G	1.111e^-4	0.826	UTR_3_PRIME Men-b UPSTREAM grass DOWNSTREAM Men-b	TF binding site mE1_TFBS_Trl
2L	5907357	2L_5907357_SNP [dm3] 2L_5907357_SNP [dm6]	G	A	1.114e^-4	0.826	INTRON bchs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	4681321	2L_4681321_SNP [dm3] 2L_4681321_SNP [dm6]	G	T	1.115e^-4	0.826	INTERGENIC
2R	11898577	2R_11898577_SNP [dm3] 2R_16011072_SNP [dm6]	C	T	1.120e^-4	0.826	SYNONYMOUS_CODING CG8388 UPSTREAM CG8389 INTRON CG8389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9808105	2L_9808105_SNP [dm3] 2L_9808105_SNP [dm6]	T	A	1.121e^-4	0.826	INTRON nAChRalpha6
3L	15263986	3L_15263986_SNP [dm3] 3L_15270886_SNP [dm6]	C	T	1.122e^-4	0.826	INTERGENIC
2L	11773588	2L_11773588_SNP [dm3] 2L_11773588_SNP [dm6]	T	A	1.124e^-4	0.826	INTERGENIC
3L	13019593	3L_13019593_SNP [dm3] 3L_13026493_SNP [dm6]	T	G	1.127e^-4	0.826	UPSTREAM Zmynd10 INTERGENIC	TF binding site mE1_TFBS_cad
2R	8111212	2R_8111212_SNP [dm3] 2R_12223707_SNP [dm6]	A	C	1.128e^-4	0.826	DOWNSTREAM CG8854 INTERGENIC
2R	7367820	2R_7367820_SNP [dm3] 2R_11480315_SNP [dm6]	T	C	1.142e^-4	0.832	INTRON inv
2R	10075984	2R_10075984_SNP [dm3] 2R_14188479_SNP [dm6]	G	C	1.147e^-4	0.832	SYNONYMOUS_CODING CG30069
2R	1720046	2R_1720046_SNP [dm3] 2R_5832541_SNP [dm6]	T	G	1.150e^-4	0.832	INTRON dpr12
2R	10013361	2R_10013361_SNP [dm3] 2R_14125856_SNP [dm6]	A	C	1.171e^-4	0.843	INTRON Prosap
2L	19207490	2L_19207490_SNP [dm3] 2L_19207490_SNP [dm6]	C	T	1.178e^-4	0.843	SYNONYMOUS_CODING drl
2R	8090555	2R_8090555_DEL [dm3] 2R_12203050_DEL [dm6]	AAAA	A	1.179e^-4	0.843	INTERGENIC
2R	11904773	2R_11904773_SNP [dm3] 2R_16017268_SNP [dm6]	T	C	1.191e^-4	0.843	UPSTREAM CG8399 & 1 other INTERGENIC
2R	11904778	2R_11904778_SNP [dm3] 2R_16017273_SNP [dm6]	C	A	1.191e^-4	0.843	UPSTREAM CG8399 & 1 other INTERGENIC
2R	11904782	2R_11904782_MNP [dm3] 2R_16017277_MNP [dm6]	CCT	TAC	1.191e^-4	0.843	UPSTREAM CG8399 & 1 other INTERGENIC
3R	23260140	3R_23260140_SNP [dm3] 3R_27434418_SNP [dm6]	A	T	1.199e^-4	0.845	INTRON side	TF binding site BDTNP1_TFBS_twi
2L	13568474	2L_13568474_SNP [dm3] 2L_13568474_SNP [dm6]	T	C	1.203e^-4	0.845	INTRON kuz
2R	10586133	2R_10586133_SNP [dm3] 2R_14698628_SNP [dm6]	T	C	1.214e^-4	0.846	INTRON mspo
2R	8086673	2R_8086673_SNP [dm3] 2R_12199168_SNP [dm6]	T	A	1.216e^-4	0.846	UPSTREAM CG8858 DOWNSTREAM snoRNA:Me28S-C3420b & 2 others INTRON RpS11	TF binding site BDTNP1_TFBS_dl
2R	10221489	2R_10221489_SNP [dm3] 2R_14333984_SNP [dm6]	A	C	1.218e^-4	0.846	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11904766	2R_11904766_SNP [dm3] 2R_16017261_SNP [dm6]	G	T	1.224e^-4	0.847	UPSTREAM CG8399 & 1 other INTERGENIC
2R	13975320	2R_13975320_SNP [dm3] 2R_18087815_SNP [dm6]	T	C	1.234e^-4	0.849	INTRON CG34386
2R	8084472	2R_8084472_SNP [dm3] 2R_12196967_SNP [dm6]	C	T	1.236e^-4	0.849	INTRON CG8858	TF binding site mE1_TFBS_cad
2R	8092470	2R_8092470_SNP [dm3] 2R_12204965_SNP [dm6]	A	T	1.244e^-4	0.85	INTERGENIC
2R	8087771	2R_8087771_SNP [dm3] 2R_12200266_SNP [dm6]	A	G	1.248e^-4	0.85	UPSTREAM snoRNA:Me28S-C3420b & 1 other INTRON RpS11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	19268153	2R_19268153_SNP [dm3] 2R_23380630_SNP [dm6]	G	A	1.254e^-4	0.85	UPSTREAM yellow-d2 DOWNSTREAM yellow-d INTRON CG13551
2R	8058737	2R_8058737_SNP [dm3] 2R_12171232_SNP [dm6]	A	C	1.255e^-4	0.85	UTR_5_PRIME Oda UPSTREAM mir-281-2 & 1 other INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10016547	2R_10016547_SNP [dm3] 2R_14129042_SNP [dm6]	A	G	1.270e^-4	0.851	INTRON Prosap
2R	10084209	2R_10084209_SNP [dm3] 2R_14196704_SNP [dm6]	A	T	1.270e^-4	0.851	NON_SYNONYMOUS_CODING CG30069	TF binding site BDTNP1_TFBS_twi
3R	18990770	3R_18990770_SNP [dm3] 3R_23165048_SNP [dm6]	G	A	1.270e^-4	0.851	INTERGENIC
2R	13975389	2R_13975389_SNP [dm3] 2R_18087884_SNP [dm6]	G	C	1.282e^-4	0.853	INTRON CG34386
2R	9739637	2R_9739637_SNP [dm3] 2R_13852132_SNP [dm6]	T	G	1.286e^-4	0.853	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG6543
3L	13059892	3L_13059892_SNP [dm3] 3L_13066792_SNP [dm6]	A	C	1.287e^-4	0.853	INTERGENIC
3R	9098658	3R_9098658_SNP [dm3] 3R_13272936_SNP [dm6]	G	T	1.296e^-4	0.853	UPSTREAM CG8449 INTERGENIC
X	8967371	X_8967371_SNP [dm3] X_9073338_SNP [dm6]	C	G	1.296e^-4	0.853	INTRON CG44325
2R	7772118	2R_7772118_SNP [dm3] 2R_11884613_SNP [dm6]	T	G	1.316e^-4	0.863	SYNONYMOUS_CODING CG13185	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9672035	2L_9672035_SNP [dm3] 2L_9672035_SNP [dm6]	T	G	1.328e^-4	0.868	UPSTREAM CR44150 INTERGENIC
2R	5884889	2R_5884889_SNP [dm3] 2R_9997384_SNP [dm6]	G	A	1.334e^-4	0.869	UTR_3_PRIME Pka-R2 INTRON Pka-R2
2R	8898174	2R_8898174_SNP [dm3] 2R_13010669_SNP [dm6]	C	T	1.352e^-4	0.872	INTERGENIC
2R	8095118	2R_8095118_SNP [dm3] 2R_12207613_SNP [dm6]	T	G	1.352e^-4	0.872	DOWNSTREAM CR45276 INTERGENIC	TF binding site mE1_TFBS_cad
X	11630586	X_11630586_SNP [dm3] X_11736553_SNP [dm6]	T	A	1.357e^-4	0.872	UTR_3_PRIME CG15221	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	11904720	2R_11904720_SNP [dm3] 2R_16017215_SNP [dm6]	C	G	1.358e^-4	0.872	UPSTREAM CG8399 & 1 other INTERGENIC
2R	9739622	2R_9739622_SNP [dm3] 2R_13852117_SNP [dm6]	T	C	1.381e^-4	0.877	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG6543
3L	13307729	3L_13307729_SNP [dm3] 3L_13314629_SNP [dm6]	C	G	1.384e^-4	0.877	INTERGENIC
3L	16019083	3L_16019083_SNP [dm3] 3L_16025983_SNP [dm6]	G	T	1.387e^-4	0.877	INTRON Notum	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	1677264	X_1677264_SNP [dm3] X_1783231_SNP [dm6]	A	C	1.388e^-4	0.877	SYNONYMOUS_CODING Adar UTR_3_PRIME Adar INTRON CG42666	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9125625	3R_9125625_SNP [dm3] 3R_13299903_SNP [dm6]	C	T	1.390e^-4	0.877	SPLICE_SITE_REGION CG8774 INTRON CG8774
2R	7062989	2R_7062989_SNP [dm3] 2R_11175484_SNP [dm6]	T	C	1.395e^-4	0.877	INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10576575	2R_10576575_SNP [dm3] 2R_14689070_SNP [dm6]	G	C	1.406e^-4	0.877	INTRON mspo
3R	25518499	3R_25518499_SNP [dm3] 3R_29692777_SNP [dm6]	C	T	1.419e^-4	0.877	UTR_5_PRIME dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11904550	2R_11904550_SNP [dm3] 2R_16017045_SNP [dm6]	A	G	1.422e^-4	0.877	SYNONYMOUS_CODING CG8397 UPSTREAM CG8399 DOWNSTREAM Rrp42
2R	11904641	2R_11904641_SNP [dm3] 2R_16017136_SNP [dm6]	G	A	1.422e^-4	0.877	UTR_5_PRIME CG8397 UPSTREAM CG8399
2L	11765109	2L_11765109_SNP [dm3] 2L_11765109_SNP [dm6]	G	A	1.422e^-4	0.877	INTERGENIC
3R	16821083	3R_16821083_SNP [dm3] 3R_20995361_SNP [dm6]	A	G	1.423e^-4	0.877	INTRON Calx	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11902344	2R_11902344_SNP [dm3] 2R_16014839_SNP [dm6]	T	A	1.426e^-4	0.877	UPSTREAM Rrp42 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	26578440	3R_26578440_SNP [dm3] 3R_30752718_SNP [dm6]	G	A	1.432e^-4	0.877	INTERGENIC
2R	8090938	2R_8090938_SNP [dm3] 2R_12203433_SNP [dm6]	G	C	1.439e^-4	0.877	INTERGENIC
2R	8089531	2R_8089531_SNP [dm3] 2R_12202026_SNP [dm6]	C	A	1.441e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12097206	2L_12097206_SNP [dm3] 2L_12097206_SNP [dm6]	G	C	1.451e^-4	0.878	NON_SYNONYMOUS_CODING Mt2 UPSTREAM CG6712 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	9726390	2L_9726390_SNP [dm3] 2L_9726390_SNP [dm6]	C	A	1.451e^-4	0.878	INTRON Nckx30C
2L	11330381	2L_11330381_SNP [dm3] 2L_11330381_SNP [dm6]	T	C	1.458e^-4	0.879	INTERGENIC
2R	14141196	2R_14141196_SNP [dm3] 2R_18253691_SNP [dm6]	G	A	1.462e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21123829	3R_21123829_SNP [dm3] 3R_25298107_SNP [dm6]	T	G	1.490e^-4	0.889	SYNONYMOUS_CODING CG31288 UPSTREAM CG31097	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	1446850	X_1446850_SNP [dm3] X_1552817_SNP [dm6]	T	A	1.500e^-4	0.889	NON_SYNONYMOUS_CODING Mur2B INTRON Mur2B	TF binding site mE1_TFBS_chinmo
2R	7401171	2R_7401171_SNP [dm3] 2R_11513666_SNP [dm6]	C	T	1.512e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	8092572	2R_8092572_SNP [dm3] 2R_12205067_SNP [dm6]	C	T	1.517e^-4	0.889	INTERGENIC
3R	26572155	3R_26572155_SNP [dm3] 3R_30746433_SNP [dm6]	G	T	1.517e^-4	0.889	UPSTREAM Npc2h DOWNSTREAM CR43238 INTERGENIC	TF binding site mE1_TFBS_cad
X	14084028	X_14084028_SNP [dm3] X_14189995_SNP [dm6]	T	C	1.522e^-4	0.889	SYNONYMOUS_CODING CG11585	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8061873	2R_8061873_SNP [dm3] 2R_12174368_SNP [dm6]	T	G	1.524e^-4	0.889	UPSTREAM Cct5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	9057999	2L_9057999_INS [dm3] 2L_9057999_INS [dm6]	G	GGTCTCTACATAAAGTTTCT...	1.528e^-4	0.889	INTRON CG31708
2R	8084501	2R_8084501_SNP [dm3] 2R_12196996_SNP [dm6]	T	C	1.532e^-4	0.889	INTRON CG8858	TF binding site mE1_TFBS_cad
3L	19320225	3L_19320225_SNP [dm3] 3L_19327125_SNP [dm6]	G	A	1.532e^-4	0.889	INTRON pip
2R	8058971	2R_8058971_SNP [dm3] 2R_12171466_SNP [dm6]	T	C	1.535e^-4	0.889	UPSTREAM Oda INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15234507	X_15234507_SNP [dm3] X_15340474_SNP [dm6]	T	C	1.537e^-4	0.889	UTR_3_PRIME CG9123 DOWNSTREAM HDAC6
2R	12132532	2R_12132532_SNP [dm3] 2R_16245027_SNP [dm6]	A	G	1.550e^-4	0.889	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15734135	2R_15734135_SNP [dm3] 2R_19846630_SNP [dm6]	G	A	1.555e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20527710	3L_20527710_INS [dm3] 3L_20534610_INS [dm6]	C	CC	1.561e^-4	0.889	INTRON Rcd2 & 1 other
3R	10550059	3R_10550059_SNP [dm3] 3R_14724337_SNP [dm6]	G	C	1.563e^-4	0.889	UPSTREAM kibra DOWNSTREAM CG7530 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3L	20313496	3L_20313496_INS [dm3] 3L_20320396_INS [dm6]	T	TA	1.566e^-4	0.889	UPSTREAM Spn77Bb DOWNSTREAM Spn77Ba INTERGENIC
3R	26753411	3R_26753411_SNP [dm3] 3R_30927689_SNP [dm6]	G	A	1.568e^-4	0.889	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	9591890	3R_9591890_SNP [dm3] 3R_13766168_SNP [dm6]	T	A	1.568e^-4	0.889	NON_SYNONYMOUS_CODING CG9312
X	4795154	X_4795154_SNP [dm3] X_4901121_SNP [dm6]	C	T	1.575e^-4	0.89	INTRON CG42594
2L	18433074	2L_18433074_SNP [dm3] 2L_18433074_SNP [dm6]	T	C	1.587e^-4	0.894	UPSTREAM CR44488 INTERGENIC
3L	6773653	3L_6773653_SNP [dm3] 3L_6780553_SNP [dm6]	C	T	1.592e^-4	0.894	INTERGENIC
2R	8092527	2R_8092527_SNP [dm3] 2R_12205022_SNP [dm6]	C	T	1.597e^-4	0.894	INTERGENIC
2L	5692955	2L_5692955_SNP [dm3] 2L_5692955_SNP [dm6]	T	A	1.609e^-4	0.895	INTERGENIC
2L	11409053	2L_11409053_SNP [dm3] 2L_11409053_SNP [dm6]	A	T	1.612e^-4	0.895	INTERGENIC	regulatory region REDfly_CRMs
3L	12357320	3L_12357320_SNP [dm3] 3L_12364220_SNP [dm6]	A	G	1.614e^-4	0.895	INTERGENIC
2R	8019459	2R_8019459_SNP [dm3] 2R_12131954_SNP [dm6]	G	C	1.630e^-4	0.899	INTERGENIC
2R	8069453	2R_8069453_SNP [dm3] 2R_12181948_SNP [dm6]	G	T	1.634e^-4	0.899	SYNONYMOUS_CODING wash UPSTREAM CG33964 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11409166	2L_11409166_SNP [dm3] 2L_11409166_SNP [dm6]	A	T	1.640e^-4	0.899	INTERGENIC	regulatory region REDfly_CRMs
2R	11902779	2R_11902779_SNP [dm3] 2R_16015274_SNP [dm6]	A	G	1.640e^-4	0.899	SYNONYMOUS_CODING Rrp42 UPSTREAM Prosbeta1 DOWNSTREAM CG8397	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	8093914	2R_8093914_SNP [dm3] 2R_12206409_SNP [dm6]	G	C	1.645e^-4	0.899	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9031458	3R_9031458_SNP [dm3] 3R_13205736_SNP [dm6]	G	C	1.663e^-4	0.899	INTERGENIC
3L	5579337	3L_5579337_SNP [dm3] 3L_5586237_SNP [dm6]	G	C	1.664e^-4	0.899	NON_SYNONYMOUS_CODING l_3_psg2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	4640144	2L_4640144_INS [dm3] 2L_4640144_INS [dm6]	T	TC	1.667e^-4	0.899	INTERGENIC
3R	9031928	3R_9031928_SNP [dm3] 3R_13206206_SNP [dm6]	C	T	1.668e^-4	0.899	INTERGENIC
2L	19205936	2L_19205936_SNP [dm3] 2L_19205936_SNP [dm6]	G	A	1.672e^-4	0.899	NON_SYNONYMOUS_CODING drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9724652	2R_9724652_SNP [dm3] 2R_13837147_SNP [dm6]	T	G	1.673e^-4	0.899	INTRON CG6347
3L	12346892	3L_12346892_SNP [dm3] 3L_12353792_SNP [dm6]	A	T	1.682e^-4	0.899	INTERGENIC
3R	26573536	3R_26573536_SNP [dm3] 3R_30747814_SNP [dm6]	C	T	1.683e^-4	0.899	UPSTREAM CR43238 INTERGENIC
2R	15734119	2R_15734119_SNP [dm3] 2R_19846614_SNP [dm6]	C	T	1.713e^-4	0.901	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15734139	2R_15734139_INS [dm3] 2R_19846634_INS [dm6]	A	ACA	1.713e^-4	0.901	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19205944	2L_19205944_SNP [dm3] 2L_19205944_SNP [dm6]	A	G	1.715e^-4	0.901	SYNONYMOUS_CODING drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7486823	3L_7486823_SNP [dm3] 3L_7493723_SNP [dm6]	T	C	1.716e^-4	0.901	SYNONYMOUS_CODING Cyp4d8 DOWNSTREAM Cyp316a1
3L	13594123	3L_13594123_SNP [dm3] 3L_13601023_SNP [dm6]	G	A	1.724e^-4	0.901	INTRON bru-3
3L	19215893	3L_19215893_SNP [dm3] 3L_19222793_SNP [dm6]	A	G	1.731e^-4	0.901	INTRON fz2
3R	12577001	3R_12577001_SNP [dm3] 3R_16751279_SNP [dm6]	T	C	1.735e^-4	0.901	START_GAINED CG31275 UTR_5_PRIME CG31275 INTRON bxd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9547425	3R_9547425_SNP [dm3] 3R_13721703_SNP [dm6]	A	T	1.753e^-4	0.901	INTRON CG34383
3R	9069658	3R_9069658_SNP [dm3] 3R_13243936_SNP [dm6]	C	G	1.753e^-4	0.901	NON_SYNONYMOUS_CODING Ace
2L	14376389	2L_14376389_SNP [dm3] 2L_14376389_SNP [dm6]	A	G	1.766e^-4	0.901	INTERGENIC
3L	13135613	3L_13135613_INS [dm3] 3L_13142513_INS [dm6]	C	CGC	1.770e^-4	0.901	INTERGENIC
2R	6792151	2R_6792151_SNP [dm3] 2R_10904646_SNP [dm6]	A	C	1.775e^-4	0.901	INTRON CG12943
2R	11522894	2R_11522894_SNP [dm3] 2R_15635389_SNP [dm6]	G	A	1.777e^-4	0.901	INTRON CG42524
3L	9055689	3L_9055689_SNP [dm3] 3L_9062589_SNP [dm6]	G	T	1.789e^-4	0.901	INTRON Argk
2R	19277508	2R_19277508_SNP [dm3] 2R_23389985_SNP [dm6]	A	T	1.791e^-4	0.901	DOWNSTREAM eIF2B-delta INTRON CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8078325	2R_8078325_SNP [dm3] 2R_12190820_SNP [dm6]	G	T	1.794e^-4	0.901	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
3L	10994504	3L_10994504_SNP [dm3] 3L_11001404_SNP [dm6]	A	G	1.794e^-4	0.901	DOWNSTREAM snoRNA:Me18S-G962 INTRON klu	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15143895	2L_15143895_INS [dm3] 2L_15143895_INS [dm6]	G	GGGGATGTGAG...	1.802e^-4	0.901	INTERGENIC
2R	14810104	2R_14810104_SNP [dm3] 2R_18922599_SNP [dm6]	G	T	1.802e^-4	0.901	INTRON sano	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14374726	2L_14374726_SNP [dm3] 2L_14374726_SNP [dm6]	G	A	1.806e^-4	0.901	INTERGENIC
3L	13282311	3L_13282311_SNP [dm3] 3L_13289211_SNP [dm6]	A	G	1.813e^-4	0.901	INTERGENIC
3R	19885127	3R_19885127_SNP [dm3] 3R_24059405_SNP [dm6]	A	G	1.819e^-4	0.901	SYNONYMOUS_CODING SMC1	TF binding site mE1_TFBS_sens
3L	15988954	3L_15988954_SNP [dm3] 3L_15995854_SNP [dm6]	T	G	1.821e^-4	0.901	INTRON CG5830
3L	15752537	3L_15752537_SNP [dm3] 3L_15759437_SNP [dm6]	C	G	1.830e^-4	0.901	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14668295	2R_14668295_SNP [dm3] 2R_18780790_SNP [dm6]	G	A	1.832e^-4	0.901	INTERGENIC
2R	11897851	2R_11897851_SNP [dm3] 2R_16010346_SNP [dm6]	C	A	1.832e^-4	0.901	NON_SYNONYMOUS_CODING CG8388 INTRON CG8389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	2990080	3R_2990080_SNP [dm3] 3R_7164358_SNP [dm6]	A	C	1.835e^-4	0.901	SPLICE_SITE_REGION sas UTR_5_PRIME sas INTRON sas
2R	8084832	2R_8084832_SNP [dm3] 2R_12197327_SNP [dm6]	T	C	1.835e^-4	0.901	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
3R	9114332	3R_9114332_SNP [dm3] 3R_13288610_SNP [dm6]	A	C	1.840e^-4	0.901	NON_SYNONYMOUS_CODING CG15887	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8986186	3R_8986186_SNP [dm3] 3R_13160464_SNP [dm6]	T	A	1.841e^-4	0.901	INTRON timeout
3R	25518937	3R_25518937_SNP [dm3] 3R_29693215_SNP [dm6]	T	G	1.841e^-4	0.901	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12577111	3R_12577111_SNP [dm3] 3R_16751389_SNP [dm6]	T	C	1.845e^-4	0.901	UPSTREAM CG31275 INTRON bxd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	13729221	X_13729221_SNP [dm3] X_13835188_SNP [dm6]	A	T	1.846e^-4	0.901	INTRON AMPdeam
2R	8084504	2R_8084504_SNP [dm3] 2R_12196999_SNP [dm6]	T	C	1.850e^-4	0.901	INTRON CG8858	TF binding site mE1_TFBS_cad
3L	10442724	3L_10442724_SNP [dm3] 3L_10449624_SNP [dm6]	A	T	1.866e^-4	0.904	INTERGENIC
2L	3548445	2L_3548445_SNP [dm3] 2L_3548445_SNP [dm6]	T	C	1.868e^-4	0.904	DOWNSTREAM drm INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6772679	3L_6772679_SNP [dm3] 3L_6779579_SNP [dm6]	C	T	1.874e^-4	0.904	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs
2L	6700887	2L_6700887_SNP [dm3] 2L_6700887_SNP [dm6]	C	A	1.875e^-4	0.904	INTRON Tsp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20787491	2L_20787491_DEL [dm3] 2L_20787491_DEL [dm6]	GGTTTG	G	1.882e^-4	0.905	UPSTREAM Pomp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
3L	12343626	3L_12343626_SNP [dm3] 3L_12350526_SNP [dm6]	A	C	1.899e^-4	0.909	INTRON CrzR
3R	7152189	3R_7152189_SNP [dm3] 3R_11326467_SNP [dm6]	G	A	1.904e^-4	0.909	INTERGENIC
X	7500413	X_7500413_SNP [dm3] X_7606380_SNP [dm6]	T	C	1.905e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	15273469	X_15273469_SNP [dm3] X_15379436_SNP [dm6]	G	A	1.911e^-4	0.91	UPSTREAM acj6 DOWNSTREAM CG9164 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9172181	3R_9172181_SNP [dm3] 3R_13346459_SNP [dm6]	T	C	1.923e^-4	0.912	INTERGENIC
X	1676704	X_1676704_SNP [dm3] X_1782671_SNP [dm6]	A	C	1.925e^-4	0.912	INTRON CG42666 & 1 other
3R	26581998	3R_26581998_SNP [dm3] 3R_30756276_SNP [dm6]	A	G	1.933e^-4	0.912	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8092581	2R_8092581_SNP [dm3] 2R_12205076_SNP [dm6]	C	T	1.934e^-4	0.912	INTERGENIC
3R	26562517	3R_26562517_SNP [dm3] 3R_30736795_SNP [dm6]	C	A	1.951e^-4	0.915	INTERGENIC
2R	11899588	2R_11899588_SNP [dm3] 2R_16012083_SNP [dm6]	T	A	1.966e^-4	0.915	UPSTREAM CG8388 INTRON CG8389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	14367878	3L_14367878_SNP [dm3] 3L_14374778_SNP [dm6]	A	C	1.971e^-4	0.915	INTERGENIC
3R	26572910	3R_26572910_SNP [dm3] 3R_30747188_SNP [dm6]	A	G	1.971e^-4	0.915	UPSTREAM Npc2h & 1 other INTERGENIC
3L	1743587	3L_1743587_SNP [dm3] 3L_1743587_SNP [dm6]	C	T	1.974e^-4	0.915	SYNONYMOUS_CODING Gk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8059576	2R_8059576_SNP [dm3] 2R_12172071_SNP [dm6]	C	T	1.976e^-4	0.915	UPSTREAM Oda INTRON Oda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_zfh1
3R	12376218	3R_12376218_SNP [dm3] 3R_16550496_SNP [dm6]	G	C	1.977e^-4	0.915	INTRON CG42342	TF binding site BDTNP1_TFBS_da
X	4012957	X_4012957_SNP [dm3] X_4118924_SNP [dm6]	G	C	1.997e^-4	0.919	SYNONYMOUS_CODING tyf UTR_5_PRIME tyf UPSTREAM tyf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	8018974	2R_8018974_SNP [dm3] 2R_12131469_SNP [dm6]	A	T	2.002e^-4	0.919	INTERGENIC
2L	13975087	2L_13975087_SNP [dm3] 2L_13975087_SNP [dm6]	G	A	2.005e^-4	0.919	NON_SYNONYMOUS_CODING NimC1	TF binding site mE1_TFBS_chinmo
3R	21999331	3R_21999331_SNP [dm3] 3R_26173609_SNP [dm6]	A	T	2.009e^-4	0.919	INTRON CG31323
2L	13568373	2L_13568373_SNP [dm3] 2L_13568373_SNP [dm6]	C	T	2.018e^-4	0.919	INTRON kuz
3R	19457134	3R_19457134_SNP [dm3] 3R_23631412_SNP [dm6]	T	A	2.031e^-4	0.919	INTRON CG31145	TF binding site mE1_TFBS_inv
3L	17948634	3L_17948634_SNP [dm3] 3L_17955534_SNP [dm6]	C	T	2.032e^-4	0.919	SYNONYMOUS_CODING Eip75B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5908095	3L_5908095_SNP [dm3] 3L_5914995_SNP [dm6]	A	G	2.035e^-4	0.919	INTRON CG13288
2L	19211696	2L_19211696_SNP [dm3] 2L_19211696_SNP [dm6]	T	G	2.036e^-4	0.919	INTERGENIC
2R	8086475	2R_8086475_INS [dm3] 2R_12198970_INS [dm6]	A	ATTC	2.038e^-4	0.919	UPSTREAM CG8858 DOWNSTREAM RpS11 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2516820	2L_2516820_SNP [dm3] 2L_2516820_SNP [dm6]	C	T	2.046e^-4	0.919	DOWNSTREAM CG3528 INTERGENIC
2L	17707178	2L_17707178_SNP [dm3] 2L_17707178_SNP [dm6]	C	T	2.046e^-4	0.919	INTRON CadN
2R	8101437	2R_8101437_SNP [dm3] 2R_12213932_SNP [dm6]	G	A	2.053e^-4	0.919	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	9216127	3R_9216127_SNP [dm3] 3R_13390405_SNP [dm6]	C	A	2.060e^-4	0.919	INTRON CCHa2
2R	8097767	2R_8097767_SNP [dm3] 2R_12210262_SNP [dm6]	C	G	2.062e^-4	0.919	SPLICE_SITE_REGION Sr-CII SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14881304	2R_14881304_SNP [dm3] 2R_18993799_SNP [dm6]	G	C	2.070e^-4	0.919	UPSTREAM snoRNA:abba-a INTRON tn
3R	24251038	3R_24251038_SNP [dm3] 3R_28425316_SNP [dm6]	A	G	2.072e^-4	0.919	INTRON beat-VI
X	14301094	X_14301094_SNP [dm3] X_14407061_SNP [dm6]	T	G	2.077e^-4	0.919	INTRON dpr8
X	5402640	X_5402640_SNP [dm3] X_5508607_SNP [dm6]	C	A	2.086e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14033273	2L_14033273_DEL [dm3] 2L_14033273_DEL [dm6]	GGG	G	2.086e^-4	0.919	EXON CR45284
3L	20313550	3L_20313550_SNP [dm3] 3L_20320450_SNP [dm6]	C	T	2.089e^-4	0.919	UPSTREAM Spn77Bb DOWNSTREAM Spn77Ba INTERGENIC
2R	8062180	2R_8062180_SNP [dm3] 2R_12174675_SNP [dm6]	C	T	2.093e^-4	0.919	UPSTREAM Cct5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5909381	2L_5909381_SNP [dm3] 2L_5909381_SNP [dm6]	G	A	2.102e^-4	0.919	SYNONYMOUS_CODING CG14000 INTRON bchs
X	16674132	X_16674132_SNP [dm3] X_16780099_SNP [dm6]	T	C	2.103e^-4	0.919	UTR_5_PRIME if	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24313591	3R_24313591_SNP [dm3] 3R_28487869_SNP [dm6]	T	C	2.110e^-4	0.919	SYNONYMOUS_CODING Dhc98D
X	14964614	X_14964614_SNP [dm3] X_15070581_SNP [dm6]	A	G	2.112e^-4	0.919	UTR_3_PRIME Lsd-2 DOWNSTREAM Lsd-2
3L	4339695	3L_4339695_SNP [dm3] 3L_4339695_SNP [dm6]	T	C	2.124e^-4	0.922	INTRON Cip4
2R	13975339	2R_13975339_SNP [dm3] 2R_18087834_SNP [dm6]	A	G	2.136e^-4	0.924	INTRON CG34386
2L	15134595	2L_15134595_SNP [dm3] 2L_15134595_SNP [dm6]	T	C	2.139e^-4	0.924	INTERGENIC
3R	21098148	3R_21098148_SNP [dm3] 3R_25272426_SNP [dm6]	C	T	2.142e^-4	0.924	NON_SYNONYMOUS_CODING CG11891 UTR_3_PRIME CG11889 DOWNSTREAM CG11889	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26573006	3R_26573006_SNP [dm3] 3R_30747284_SNP [dm6]	C	A	2.154e^-4	0.926	UPSTREAM Npc2h & 1 other INTERGENIC
2L	8347453	2L_8347453_SNP [dm3] 2L_8347453_SNP [dm6]	T	C	2.158e^-4	0.926	INTRON CG7778
3L	14367859	3L_14367859_SNP [dm3] 3L_14374759_SNP [dm6]	C	T	2.174e^-4	0.929	INTERGENIC
2L	4222393	2L_4222393_SNP [dm3] 2L_4222393_SNP [dm6]	A	T	2.181e^-4	0.929	UPSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
X	14964491	X_14964491_SNP [dm3] X_15070458_SNP [dm6]	G	A	2.190e^-4	0.929	UTR_3_PRIME Lsd-2
2R	10585509	2R_10585509_SNP [dm3] 2R_14698004_SNP [dm6]	G	T	2.192e^-4	0.929	INTRON mspo
X	2222214	X_2222214_SNP [dm3] X_2328181_SNP [dm6]	T	A	2.194e^-4	0.929	SYNONYMOUS_CODING CG2854 INTRON phl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14154373	X_14154373_SNP [dm3] X_14260340_SNP [dm6]	A	T	2.195e^-4	0.929	UPSTREAM CG1461 INTERGENIC
X	8539407	X_8539407_SNP [dm3] X_8645374_SNP [dm6]	A	T	2.204e^-4	0.93	INTRON oc
3R	9114172	3R_9114172_SNP [dm3] 3R_13288450_SNP [dm6]	A	C	2.206e^-4	0.93	INTRON CG15887	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20762272	2L_20762272_DEL [dm3] 2L_20762272_DEL [dm6]	CC	C	2.221e^-4	0.93	DOWNSTREAM dia INTRON dia	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6278026	2L_6278026_SNP [dm3] 2L_6278026_SNP [dm6]	T	G	2.222e^-4	0.93	INTRON Ddr
2L	11330371	2L_11330371_SNP [dm3] 2L_11330371_SNP [dm6]	G	A	2.224e^-4	0.93	INTERGENIC
2R	16917230	2R_16917230_SNP [dm3] 2R_21029725_SNP [dm6]	T	G	2.236e^-4	0.93	EXON CR45148
3L	13014945	3L_13014945_SNP [dm3] 3L_13021845_SNP [dm6]	T	A	2.244e^-4	0.93	UPSTREAM AdenoK INTRON AdenoK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13979728	2R_13979728_SNP [dm3] 2R_18092223_SNP [dm6]	C	T	2.257e^-4	0.93	INTRON CG34386
2L	1510587	2L_1510587_SNP [dm3] 2L_1510587_SNP [dm6]	C	A	2.271e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8095598	2R_8095598_SNP [dm3] 2R_12208093_SNP [dm6]	T	G	2.271e^-4	0.93	DOWNSTREAM CR45276 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	21746691	3R_21746691_SNP [dm3] 3R_25920969_SNP [dm6]	C	T	2.274e^-4	0.93	UTR_3_PRIME CG42235 DOWNSTREAM CG14546
3L	15989854	3L_15989854_SNP [dm3] 3L_15996754_SNP [dm6]	T	A	2.276e^-4	0.93	INTRON CG5830
2L	5914535	2L_5914535_SNP [dm3] 2L_5914535_SNP [dm6]	A	G	2.277e^-4	0.93	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8019960	2R_8019960_SNP [dm3] 2R_12132455_SNP [dm6]	G	A	2.284e^-4	0.93	INTERGENIC
2R	8024102	2R_8024102_SNP [dm3] 2R_12136597_SNP [dm6]	C	G	2.290e^-4	0.93	INTERGENIC
2R	16086998	2R_16086998_SNP [dm3] 2R_20199493_SNP [dm6]	G	C	2.292e^-4	0.93	INTERGENIC
2R	8898177	2R_8898177_SNP [dm3] 2R_13010672_SNP [dm6]	A	T	2.292e^-4	0.93	INTERGENIC
3R	19282495	3R_19282495_SNP [dm3] 3R_23456773_SNP [dm6]	C	A	2.300e^-4	0.93	INTRON CG4374
2R	10896346	2R_10896346_DEL [dm3] 2R_15008841_DEL [dm6]	AA	A	2.305e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1554948	2L_1554948_SNP [dm3] 2L_1554948_SNP [dm6]	C	T	2.307e^-4	0.93	UPSTREAM haf INTERGENIC	TF binding site mE1_TFBS_HSA
3R	19770381	3R_19770381_SNP [dm3] 3R_23944659_SNP [dm6]	C	T	2.308e^-4	0.93	INTRON CG12268	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25517329	3R_25517329_SNP [dm3] 3R_29691607_SNP [dm6]	G	A	2.313e^-4	0.93	UPSTREAM dmrt99B INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	15703584	2R_15703584_SNP [dm3] 2R_19816079_SNP [dm6]	T	C	2.318e^-4	0.93	UTR_3_PRIME Obp56h
2R	11594127	2R_11594127_SNP [dm3] 2R_15706622_SNP [dm6]	C	T	2.319e^-4	0.93	INTERGENIC
2L	13104056	2L_13104056_SNP [dm3] 2L_13104056_SNP [dm6]	G	C	2.320e^-4	0.93	UPSTREAM CR45461 INTERGENIC
X	15341479	X_15341479_SNP [dm3] X_15447446_SNP [dm6]	C	T	2.340e^-4	0.933	SYNONYMOUS_CODING Scamp UTR_3_PRIME Scamp
2R	19132875	2R_19132875_SNP [dm3] 2R_23245352_SNP [dm6]	A	G	2.340e^-4	0.933	UTR_5_PRIME yip3
3L	18190087	3L_18190087_SNP [dm3] 3L_18196987_SNP [dm6]	T	C	2.352e^-4	0.933	DOWNSTREAM CR45234 INTERGENIC
2R	19278570	2R_19278570_SNP [dm3] 2R_23391047_SNP [dm6]	G	A	2.353e^-4	0.933	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22993591	3R_22993591_SNP [dm3] 3R_27167869_SNP [dm6]	C	T	2.354e^-4	0.933	DOWNSTREAM spn-D INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9732503	2R_9732503_SNP [dm3] 2R_13844998_SNP [dm6]	C	G	2.375e^-4	0.939	INTRON Syngr
2L	14376896	2L_14376896_SNP [dm3] 2L_14376896_SNP [dm6]	C	T	2.383e^-4	0.939	INTERGENIC
3L	12770438	3L_12770438_SNP [dm3] 3L_12777338_SNP [dm6]	G	T	2.392e^-4	0.939	NON_SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9163496	3R_9163496_SNP [dm3] 3R_13337774_SNP [dm6]	G	C	2.398e^-4	0.939	UPSTREAM PK2-R1 INTERGENIC
3R	26119050	3R_26119050_SNP [dm3] 3R_30293328_SNP [dm6]	T	G	2.405e^-4	0.939	INTRON hdc
2R	11904703	2R_11904703_SNP [dm3] 2R_16017198_SNP [dm6]	T	A	2.409e^-4	0.939	UPSTREAM CG8399 & 1 other INTERGENIC
2L	14630391	2L_14630391_SNP [dm3] 2L_14630391_SNP [dm6]	T	A	2.412e^-4	0.939	INTRON osp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9076306	3R_9076306_SNP [dm3] 3R_13250584_SNP [dm6]	T	A	2.413e^-4	0.939	INTRON Ace
2R	17623610	2R_17623610_SNP [dm3] 2R_21736105_SNP [dm6]	G	A	2.415e^-4	0.939	INTERGENIC
2L	19204125	2L_19204125_SNP [dm3] 2L_19204125_SNP [dm6]	A	G	2.430e^-4	0.939	INTRON drl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2R	20279716	2R_20279716_INS [dm3] 2R_24392193_INS [dm6]	T	TGTAT	2.436e^-4	0.939	UTR_3_PRIME slik DOWNSTREAM slik & 1 other
3L	14375784	3L_14375784_SNP [dm3] 3L_14382684_SNP [dm6]	G	T	2.442e^-4	0.939	SYNONYMOUS_CODING CG43120
2R	19138692	2R_19138692_SNP [dm3] 2R_23251169_SNP [dm6]	C	A	2.459e^-4	0.939	INTERGENIC
X	15273591	X_15273591_SNP [dm3] X_15379558_SNP [dm6]	G	A	2.462e^-4	0.939	UPSTREAM acj6 DOWNSTREAM CG9164 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	14205270	X_14205270_SNP [dm3] X_14311237_SNP [dm6]	C	T	2.472e^-4	0.939	INTERGENIC
2L	19278285	2L_19278285_SNP [dm3] 2L_19278285_SNP [dm6]	A	G	2.476e^-4	0.939	INTERGENIC
2R	14189546	2R_14189546_SNP [dm3] 2R_18302041_SNP [dm6]	G	A	2.483e^-4	0.939	DOWNSTREAM CG14505 INTRON sbb
2L	5369129	2L_5369129_SNP [dm3] 2L_5369129_SNP [dm6]	T	A	2.488e^-4	0.939	INTERGENIC
2L	3819526	2L_3819526_SNP [dm3] 2L_3819526_SNP [dm6]	G	T	2.493e^-4	0.939	DOWNSTREAM CR44077 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13948466	2L_13948466_SNP [dm3] 2L_13948466_SNP [dm6]	G	A	2.494e^-4	0.939	UPSTREAM CG16884 INTRON Ance-3
X	867652	X_867652_INS [dm3] X_973619_INS [dm6]	T	CCCTTTTTAACA...	2.501e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_cad
3L	15538182	3L_15538182_SNP [dm3] 3L_15545082_SNP [dm6]	T	C	2.504e^-4	0.939	INTRON CrebA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21123568	3R_21123568_SNP [dm3] 3R_25297846_SNP [dm6]	G	A	2.510e^-4	0.939	UPSTREAM CG31097 DOWNSTREAM CG31288 INTERGENIC	TF binding site mE1_TFBS_sens
2R	8087287	2R_8087287_INS [dm3] 2R_12199782_INS [dm6]	T	TAT	2.512e^-4	0.939	UPSTREAM CG8858 & 2 others INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	3515390	3R_3515390_SNP [dm3] 3R_7689668_SNP [dm6]	A	G	2.518e^-4	0.939	INTRON Nlg1	TF binding site mE1_TFBS_sbb
2R	14140126	2R_14140126_SNP [dm3] 2R_18252621_SNP [dm6]	A	G	2.521e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16994753	2L_16994753_SNP [dm3] 2L_16994753_SNP [dm6]	G	C	2.526e^-4	0.939	DOWNSTREAM beat-IIIb INTERGENIC
2L	11409090	2L_11409090_SNP [dm3] 2L_11409090_SNP [dm6]	A	G	2.528e^-4	0.939	INTERGENIC	regulatory region REDfly_CRMs
2L	1510586	2L_1510586_SNP [dm3] 2L_1510586_SNP [dm6]	G	A	2.530e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9175058	3R_9175058_DEL [dm3] 3R_13349336_DEL [dm6]	AA	A	2.538e^-4	0.939	INTERGENIC
2L	17829955	2L_17829955_SNP [dm3] 2L_17829955_SNP [dm6]	C	A	2.540e^-4	0.939	INTRON CadN2
3L	10875073	3L_10875073_SNP [dm3] 3L_10881973_SNP [dm6]	G	A	2.541e^-4	0.939	UPSTREAM CG7949 INTRON CG6409
3L	5573504	3L_5573504_SNP [dm3] 3L_5580404_SNP [dm6]	C	T	2.541e^-4	0.939	INTERGENIC
2R	17323312	2R_17323312_SNP [dm3] 2R_21435807_SNP [dm6]	C	T	2.551e^-4	0.939	INTRON Sdc
3R	9154778	3R_9154778_SNP [dm3] 3R_13329056_SNP [dm6]	A	T	2.555e^-4	0.939	DOWNSTREAM PK2-R2 INTERGENIC
2L	5920032	2L_5920032_SNP [dm3] 2L_5920032_SNP [dm6]	C	A	2.555e^-4	0.939	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
3R	26573519	3R_26573519_SNP [dm3] 3R_30747797_SNP [dm6]	G	A	2.562e^-4	0.939	UPSTREAM CR43238 INTERGENIC
3R	26573520	3R_26573520_SNP [dm3] 3R_30747798_SNP [dm6]	G	A	2.562e^-4	0.939	UPSTREAM CR43238 INTERGENIC
3L	15263964	3L_15263964_SNP [dm3] 3L_15270864_SNP [dm6]	T	C	2.568e^-4	0.939	INTERGENIC
3R	18936651	3R_18936651_SNP [dm3] 3R_23110929_SNP [dm6]	G	A	2.573e^-4	0.939	INTRON CG13830
2L	1553996	2L_1553996_SNP [dm3] 2L_1553996_SNP [dm6]	C	G	2.577e^-4	0.939	INTERGENIC
2L	11773580	2L_11773580_SNP [dm3] 2L_11773580_SNP [dm6]	T	C	2.577e^-4	0.939	INTERGENIC
2R	7958961	2R_7958961_SNP [dm3] 2R_12071456_SNP [dm6]	A	C	2.587e^-4	0.94	INTRON CG8888
2R	14700579	2R_14700579_SNP [dm3] 2R_18813074_SNP [dm6]	T	A	2.598e^-4	0.943	INTRON CG15096
2R	8090941	2R_8090941_INS [dm3] 2R_12203436_INS [dm6]	C	CG	2.608e^-4	0.944	INTERGENIC
2L	12849921	2L_12849921_SNP [dm3] 2L_12849921_SNP [dm6]	C	T	2.622e^-4	0.948	INTERGENIC
3R	26572219	3R_26572219_SNP [dm3] 3R_30746497_SNP [dm6]	C	A	2.638e^-4	0.948	UPSTREAM Npc2h DOWNSTREAM CR43238 INTERGENIC	TF binding site mE1_TFBS_cad
X	11630630	X_11630630_SNP [dm3] X_11736597_SNP [dm6]	G	T	2.641e^-4	0.948	UTR_3_PRIME CG15221	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	11174669	2R_11174669_SNP [dm3] 2R_15287164_SNP [dm6]	C	T	2.654e^-4	0.948	UPSTREAM Trpm INTRON Trpm
2R	11171660	2R_11171660_SNP [dm3] 2R_15284155_SNP [dm6]	T	A	2.663e^-4	0.948	INTRON Trpm
X	14702006	X_14702006_SNP [dm3] X_14807973_SNP [dm6]	T	C	2.669e^-4	0.948	INTRON rut
X	7480719	X_7480719_SNP [dm3] X_7586686_SNP [dm6]	G	A	2.671e^-4	0.948	UPSTREAM CG12689 INTERGENIC	regulatory region REDfly_CRMs
X	14090881	X_14090881_SNP [dm3] X_14196848_SNP [dm6]	T	C	2.675e^-4	0.948	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4081201	3L_4081201_SNP [dm3] 3L_4081201_SNP [dm6]	T	G	2.675e^-4	0.948	INTRON Gad1	TF binding site mE1_TFBS_HSA
2R	18443878	2R_18443878_SNP [dm3] 2R_22556373_SNP [dm6]	A	T	2.677e^-4	0.948	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14243247	2L_14243247_SNP [dm3] 2L_14243247_SNP [dm6]	C	T	2.681e^-4	0.948	INTERGENIC
2L	10234362	2L_10234362_SNP [dm3] 2L_10234362_SNP [dm6]	G	A	2.691e^-4	0.948	UTR_3_PRIME eEF1delta DOWNSTREAM mthl15
2R	8093885	2R_8093885_SNP [dm3] 2R_12206380_SNP [dm6]	T	G	2.695e^-4	0.948	EXON CR45276	TF binding site mE1_TFBS_cad
2L	15046905	2L_15046905_SNP [dm3] 2L_15046905_SNP [dm6]	A	G	2.700e^-4	0.948	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad
3R	3773080	3R_3773080_SNP [dm3] 3R_7947358_SNP [dm6]	G	C	2.706e^-4	0.948	INTRON dsx	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16489705	2L_16489705_SNP [dm3] 2L_16489705_SNP [dm6]	A	G	2.706e^-4	0.948	NON_SYNONYMOUS_CODING CG4580 DOWNSTREAM CR44994	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	22877668	3R_22877668_SNP [dm3] 3R_27051946_SNP [dm6]	G	T	2.710e^-4	0.948	DOWNSTREAM TwdlT INTRON RYa-R
2R	16052775	2R_16052775_SNP [dm3] 2R_20165270_SNP [dm6]	T	A	2.711e^-4	0.948	INTERGENIC
2R	10083496	2R_10083496_SNP [dm3] 2R_14195991_SNP [dm6]	A	G	2.719e^-4	0.949	SYNONYMOUS_CODING CG30069	TF binding site BDTNP1_TFBS_twi
X	2417182	X_2417182_SNP [dm3] X_2523149_SNP [dm6]	C	G	2.726e^-4	0.949	INTRON trol
2R	8092424	2R_8092424_SNP [dm3] 2R_12204919_SNP [dm6]	A	T	2.733e^-4	0.949	INTERGENIC
2R	12148030	2R_12148030_SNP [dm3] 2R_16260525_SNP [dm6]	C	T	2.735e^-4	0.949	UPSTREAM CngA INTERGENIC
3R	15278676	3R_15278676_SNP [dm3] 3R_19452954_SNP [dm6]	C	T	2.737e^-4	0.949	INTRON CG31221
2R	13782162	2R_13782162_SNP [dm3] 2R_17894657_SNP [dm6]	T	A	2.752e^-4	0.949	UPSTREAM CG14491 & 1 other INTRON Elk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	8090373	2R_8090373_SNP [dm3] 2R_12202868_SNP [dm6]	A	G	2.758e^-4	0.949	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8101395	2R_8101395_SNP [dm3] 2R_12213890_SNP [dm6]	C	A	2.770e^-4	0.949	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8101396	2R_8101396_SNP [dm3] 2R_12213891_SNP [dm6]	A	G	2.770e^-4	0.949	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8101400	2R_8101400_DEL [dm3] 2R_12213895_DEL [dm6]	TAAATATAACA...	T	2.770e^-4	0.949	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	22983233	3R_22983233_SNP [dm3] 3R_27157511_SNP [dm6]	T	C	2.775e^-4	0.949	UTR_3_PRIME Men-b UPSTREAM grass	TF binding site mE1_TFBS_Trl
2L	7363468	2L_7363468_INS [dm3] 2L_7363468_INS [dm6]	A	AA	2.775e^-4	0.949	UTR_5_PRIME Wnt10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6814766	X_6814766_SNP [dm3] X_6920733_SNP [dm6]	T	C	2.780e^-4	0.949	INTRON CG14431
2R	11171505	2R_11171505_SNP [dm3] 2R_15284000_SNP [dm6]	A	T	2.782e^-4	0.949	INTRON Trpm
X	18184279	X_18184279_SNP [dm3] X_18290246_SNP [dm6]	G	A	2.790e^-4	0.949	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5335700	X_5335700_SNP [dm3] X_5441667_SNP [dm6]	C	T	2.795e^-4	0.949	INTERGENIC
2R	16929377	2R_16929377_DEL [dm3] 2R_21041872_DEL [dm6]	TCCATACA	G	2.799e^-4	0.949	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9732501	2R_9732501_SNP [dm3] 2R_13844996_SNP [dm6]	T	C	2.805e^-4	0.95	INTRON Syngr
3R	22675786	3R_22675786_SNP [dm3] 3R_26850064_SNP [dm6]	G	A	2.818e^-4	0.952	INTRON Lerp
2R	13941175	2R_13941175_SNP [dm3] 2R_18053670_SNP [dm6]	T	G	2.824e^-4	0.952	NON_SYNONYMOUS_CODING CG10911
2L	9929641	2L_9929641_SNP [dm3] 2L_9929641_SNP [dm6]	G	A	2.829e^-4	0.952	UPSTREAM CG42367 INTRON CG42366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8986185	3R_8986185_SNP [dm3] 3R_13160463_SNP [dm6]	G	A	2.847e^-4	0.957	INTRON timeout
2L	17438958	2L_17438958_SNP [dm3] 2L_17438958_SNP [dm6]	G	C	2.857e^-4	0.959	UTR_3_PRIME dl INTRON dl
2R	1716659	2R_1716659_SNP [dm3] 2R_5829154_SNP [dm6]	T	C	2.871e^-4	0.959	INTRON dpr12	TF binding site mE1_TFBS_chinmo
2R	13975330	2R_13975330_SNP [dm3] 2R_18087825_SNP [dm6]	T	G	2.873e^-4	0.959	INTRON CG34386
2R	19274370	2R_19274370_SNP [dm3] 2R_23386847_SNP [dm6]	G	C	2.879e^-4	0.959	UPSTREAM eIF2B-delta & 1 other INTRON eIF2B-delta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13951467	2L_13951467_SNP [dm3] 2L_13951467_SNP [dm6]	G	T	2.879e^-4	0.959	INTRON Ance-3
2R	17676875	2R_17676875_SNP [dm3] 2R_21789370_SNP [dm6]	T	C	2.895e^-4	0.962	DOWNSTREAM lox2 INTERGENIC
2R	13741172	2R_13741172_SNP [dm3] 2R_17853667_SNP [dm6]	G	T	2.898e^-4	0.962	SYNONYMOUS_CODING CG30323 INTRON olf186-F
2R	13181311	2R_13181311_SNP [dm3] 2R_17293806_SNP [dm6]	T	C	2.906e^-4	0.962	INTRON mbl
3L	14367882	3L_14367882_INS [dm3] 3L_14374782_INS [dm6]	C	CC	2.910e^-4	0.962	INTERGENIC
3R	24313498	3R_24313498_SNP [dm3] 3R_28487776_SNP [dm6]	G	A	2.916e^-4	0.963	SYNONYMOUS_CODING Dhc98D
2L	13960721	2L_13960721_SNP [dm3] 2L_13960721_SNP [dm6]	A	C	2.925e^-4	0.964	INTRON NimA
2R	11652398	2R_11652398_SNP [dm3] 2R_15764893_SNP [dm6]	G	A	2.939e^-4	0.965	INTRON Zasp52	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13568500	2L_13568500_SNP [dm3] 2L_13568500_SNP [dm6]	A	G	2.945e^-4	0.965	INTRON kuz
3R	14146927	3R_14146927_SNP [dm3] 3R_18321205_SNP [dm6]	A	T	2.947e^-4	0.965	INTRON CG31235
2R	12767343	2R_12767343_SNP [dm3] 2R_16879838_SNP [dm6]	C	T	2.956e^-4	0.965	UPSTREAM CG6472 INTRON CG8910
2R	19277702	2R_19277702_SNP [dm3] 2R_23390179_SNP [dm6]	C	G	2.967e^-4	0.965	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16274199	X_16274199_SNP [dm3] X_16380166_SNP [dm6]	C	T	2.968e^-4	0.965	INTRON Fur2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19211808	2L_19211808_SNP [dm3] 2L_19211808_SNP [dm6]	C	T	2.969e^-4	0.965	INTERGENIC
3R	26568830	3R_26568830_SNP [dm3] 3R_30743108_SNP [dm6]	C	T	2.988e^-4	0.965	SYNONYMOUS_CODING CG15543
3R	26568865	3R_26568865_SNP [dm3] 3R_30743143_SNP [dm6]	C	G	2.988e^-4	0.965	NON_SYNONYMOUS_CODING CG15543
X	15551480	X_15551480_SNP [dm3] X_15657447_SNP [dm6]	C	A	3.002e^-4	0.965	INTERGENIC
2L	19675539	2L_19675539_SNP [dm3] 2L_19675539_SNP [dm6]	A	C	3.004e^-4	0.965	INTRON Lar
3R	12150988	3R_12150988_SNP [dm3] 3R_16325266_SNP [dm6]	A	T	3.008e^-4	0.965	UPSTREAM CG17929 DOWNSTREAM CG6901 INTRON Sulf1
2L	9750542	2L_9750542_SNP [dm3] 2L_9750542_SNP [dm6]	C	G	3.021e^-4	0.965	UPSTREAM Cyp4e3 INTERGENIC
2R	8898161	2R_8898161_SNP [dm3] 2R_13010656_SNP [dm6]	G	A	3.025e^-4	0.965	INTERGENIC
X	6195898	X_6195898_SNP [dm3] X_6301865_SNP [dm6]	A	C	3.026e^-4	0.965	UPSTREAM CG12219 INTERGENIC
3R	22453485	3R_22453485_SNP [dm3] 3R_26627763_SNP [dm6]	T	A	3.045e^-4	0.965	DOWNSTREAM TwdlK INTERGENIC
3L	12343842	3L_12343842_SNP [dm3] 3L_12350742_SNP [dm6]	G	A	3.046e^-4	0.965	INTRON CrzR
2L	4678350	2L_4678350_SNP [dm3] 2L_4678350_SNP [dm6]	A	G	3.053e^-4	0.965	INTERGENIC
3R	9076295	3R_9076295_DEL [dm3] 3R_13250573_DEL [dm6]	CGATC	C	3.054e^-4	0.965	INTRON Ace
3L	3187461	3L_3187461_SNP [dm3] 3L_3187461_SNP [dm6]	T	A	3.054e^-4	0.965	UPSTREAM CG14957 DOWNSTREAM CG42494 & 2 others INTERGENIC
3R	10113674	3R_10113674_SNP [dm3] 3R_14287952_SNP [dm6]	T	C	3.060e^-4	0.965	UPSTREAM CR45596 INTERGENIC
2L	9057939	2L_9057939_SNP [dm3] 2L_9057939_SNP [dm6]	A	T	3.065e^-4	0.965	INTRON CG31708
X	7609929	X_7609929_SNP [dm3] X_7715896_SNP [dm6]	T	A	3.067e^-4	0.965	UPSTREAM CG15478 INTRON CG15478
3R	15515890	3R_15515890_SNP [dm3] 3R_19690168_SNP [dm6]	A	G	3.068e^-4	0.965	INTRON Naam
3L	6096266	3L_6096266_SNP [dm3] 3L_6103166_SNP [dm6]	T	A	3.074e^-4	0.965	INTRON Ets65A
2L	17752026	2L_17752026_SNP [dm3] 2L_17752026_SNP [dm6]	C	A	3.080e^-4	0.965	UTR_5_PRIME CadN INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	16498016	2L_16498016_SNP [dm3] 2L_16498016_SNP [dm6]	T	C	3.085e^-4	0.965	INTRON Tpr2
3R	26569535	3R_26569535_SNP [dm3] 3R_30743813_SNP [dm6]	C	T	3.087e^-4	0.965	SYNONYMOUS_CODING CG15543 DOWNSTREAM Npc2g
X	16410025	X_16410025_SNP [dm3] X_16515992_SNP [dm6]	A	G	3.089e^-4	0.965	INTRON para
2R	17325525	2R_17325525_SNP [dm3] 2R_21438020_SNP [dm6]	G	A	3.091e^-4	0.965	INTRON Sdc
3R	12671336	3R_12671336_SNP [dm3] 3R_16845614_SNP [dm6]	A	C	3.092e^-4	0.965	INTRON iab-8	TF binding site mE1_TFBS_cad
X	14960834	X_14960834_SNP [dm3] X_15066801_SNP [dm6]	A	G	3.102e^-4	0.965	UPSTREAM dob & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	20511318	3R_20511318_SNP [dm3] 3R_24685596_SNP [dm6]	T	C	3.118e^-4	0.965	INTRON slo
X	19436895	X_19436895_SNP [dm3] X_19542862_SNP [dm6]	T	C	3.121e^-4	0.965	INTRON CG32532
3R	21121069	3R_21121069_SNP [dm3] 3R_25295347_SNP [dm6]	T	G	3.122e^-4	0.965	UTR_5_PRIME CG31102 DOWNSTREAM CG31097
3L	13349801	3L_13349801_SNP [dm3] 3L_13356701_SNP [dm6]	A	G	3.126e^-4	0.965	INTRON Nplp2
2R	1716364	2R_1716364_SNP [dm3] 2R_5828859_SNP [dm6]	T	G	3.132e^-4	0.965	INTRON dpr12	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10886035	2R_10886035_DEL [dm3] 2R_14998530_DEL [dm6]	TAT	T	3.140e^-4	0.965	INTERGENIC
2R	17639707	2R_17639707_SNP [dm3] 2R_21752202_SNP [dm6]	A	G	3.146e^-4	0.965	INTERGENIC
3L	4163845	3L_4163845_SNP [dm3] 3L_4163845_SNP [dm6]	T	C	3.149e^-4	0.965	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11409087	2L_11409087_SNP [dm3] 2L_11409087_SNP [dm6]	C	G	3.152e^-4	0.965	INTERGENIC	regulatory region REDfly_CRMs
3R	15186102	3R_15186102_SNP [dm3] 3R_19360380_SNP [dm6]	A	C	3.152e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13051564	2L_13051564_SNP [dm3] 2L_13051564_SNP [dm6]	G	T	3.155e^-4	0.965	INTRON CG9932
2L	17707181	2L_17707181_SNP [dm3] 2L_17707181_SNP [dm6]	T	C	3.155e^-4	0.965	INTRON CadN
2R	8084943	2R_8084943_SNP [dm3] 2R_12197438_SNP [dm6]	T	C	3.176e^-4	0.969	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18589585	3L_18589585_SNP [dm3] 3L_18596485_SNP [dm6]	C	A	3.186e^-4	0.969	EXON CR45389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15096959	2L_15096959_SNP [dm3] 2L_15096959_SNP [dm6]	T	A	3.194e^-4	0.969	DOWNSTREAM CG15270 INTERGENIC
3L	6773629	3L_6773629_SNP [dm3] 3L_6780529_SNP [dm6]	A	G	3.194e^-4	0.969	INTERGENIC
3L	12358395	3L_12358395_SNP [dm3] 3L_12365295_SNP [dm6]	G	A	3.195e^-4	0.969	INTERGENIC
3R	18784527	3R_18784527_SNP [dm3] 3R_22958805_SNP [dm6]	A	G	3.205e^-4	0.97	INTRON klg	TF binding site mE1_TFBS_cad
3R	19844578	3R_19844578_SNP [dm3] 3R_24018856_SNP [dm6]	A	C	3.209e^-4	0.97	INTRON KrT95D
2R	11132585	2R_11132585_SNP [dm3] 2R_15245080_SNP [dm6]	T	C	3.213e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1
2R	13741202	2R_13741202_SNP [dm3] 2R_17853697_SNP [dm6]	A	T	3.216e^-4	0.97	SYNONYMOUS_CODING CG30323 INTRON olf186-F
2L	17530048	2L_17530048_SNP [dm3] 2L_17530048_SNP [dm6]	G	A	3.238e^-4	0.973	SYNONYMOUS_CODING CG15145 UPSTREAM CG15144	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13975429	2R_13975429_INS [dm3] 2R_18087924_INS [dm6]	C	CTTTGTCCC	3.240e^-4	0.973	INTRON CG34386
3R	24313483	3R_24313483_SNP [dm3] 3R_28487761_SNP [dm6]	G	T	3.242e^-4	0.973	SYNONYMOUS_CODING Dhc98D
3R	21125593	3R_21125593_SNP [dm3] 3R_25299871_SNP [dm6]	G	C	3.250e^-4	0.973	UPSTREAM CG31288 INTERGENIC
2R	8084916	2R_8084916_SNP [dm3] 2R_12197411_SNP [dm6]	T	A	3.252e^-4	0.973	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14883042	2R_14883042_SNP [dm3] 2R_18995537_SNP [dm6]	A	G	3.275e^-4	0.977	DOWNSTREAM snoRNA:abba-a INTRON tn
2R	8087999	2R_8087999_SNP [dm3] 2R_12200494_SNP [dm6]	G	A	3.275e^-4	0.977	SYNONYMOUS_CODING RpS11 UPSTREAM snoRNA:Me28S-C3420a INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	6793814	3L_6793814_SNP [dm3] 3L_6800714_SNP [dm6]	C	T	3.311e^-4	0.984	INTERGENIC
3R	23889935	3R_23889935_SNP [dm3] 3R_28064213_SNP [dm6]	C	T	3.312e^-4	0.984	INTRON CG34362
2R	8092484	2R_8092484_SNP [dm3] 2R_12204979_SNP [dm6]	T	C	3.315e^-4	0.984	INTERGENIC
2L	12830547	2L_12830547_SNP [dm3] 2L_12830547_SNP [dm6]	C	T	3.329e^-4	0.985	INTERGENIC
3L	7121093	3L_7121093_SNP [dm3] 3L_7127993_SNP [dm6]	A	G	3.338e^-4	0.985	SYNONYMOUS_CODING CG8629 UTR_3_PRIME BBS1 UPSTREAM CG15829
3L	15934189	3L_15934189_SNP [dm3] 3L_15941089_SNP [dm6]	C	A	3.340e^-4	0.985	INTRON Pka-C3
2R	11745492	2R_11745492_SNP [dm3] 2R_15857987_SNP [dm6]	G	T	3.346e^-4	0.985	SYNONYMOUS_CODING Gpo-1 DOWNSTREAM CG12970
2R	8101421	2R_8101421_SNP [dm3] 2R_12213916_SNP [dm6]	T	C	3.347e^-4	0.985	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6989352	3L_6989352_INS [dm3] 3L_6996252_INS [dm6]	G	GAA	3.354e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_zfh1
3R	20834602	3R_20834602_SNP [dm3] 3R_25008880_SNP [dm6]	C	G	3.360e^-4	0.985	INTRON tnc	TF binding site mE1_TFBS_chinmo
3R	9675176	3R_9675176_SNP [dm3] 3R_13849454_SNP [dm6]	G	A	3.363e^-4	0.985	INTERGENIC
X	1680409	X_1680409_SNP [dm3] X_1786376_SNP [dm6]	T	C	3.370e^-4	0.985	UTR_3_PRIME Adar INTRON CG42666
3R	21123835	3R_21123835_SNP [dm3] 3R_25298113_SNP [dm6]	C	T	3.376e^-4	0.985	SYNONYMOUS_CODING CG31288 UPSTREAM CG31097	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8091288	2R_8091288_SNP [dm3] 2R_12203783_SNP [dm6]	G	T	3.377e^-4	0.985	INTERGENIC
2R	8093892	2R_8093892_SNP [dm3] 2R_12206387_SNP [dm6]	G	A	3.383e^-4	0.985	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	1453775	X_1453775_SNP [dm3] X_1559742_SNP [dm6]	G	C	3.396e^-4	0.985	INTRON Mur2B
2R	7766298	2R_7766298_SNP [dm3] 2R_11878793_SNP [dm6]	T	G	3.396e^-4	0.985	NON_SYNONYMOUS_CODING CG13185
3R	9114210	3R_9114210_SNP [dm3] 3R_13288488_SNP [dm6]	T	C	3.398e^-4	0.985	INTRON CG15887	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14459283	2L_14459283_DEL [dm3] 2L_14459283_DEL [dm6]	CC	C	3.408e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	14376425	2L_14376425_SNP [dm3] 2L_14376425_SNP [dm6]	C	T	3.408e^-4	0.985	INTERGENIC
2L	10412051	2L_10412051_SNP [dm3] 2L_10412051_SNP [dm6]	G	T	3.413e^-4	0.985	NON_SYNONYMOUS_CODING CG5355	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26120572	3R_26120572_SNP [dm3] 3R_30294850_SNP [dm6]	T	G	3.424e^-4	0.986	INTRON hdc
2R	11132591	2R_11132591_SNP [dm3] 2R_15245086_SNP [dm6]	C	T	3.427e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1
3R	9019797	3R_9019797_SNP [dm3] 3R_13194075_SNP [dm6]	A	G	3.443e^-4	0.986	INTERGENIC
2R	19197363	2R_19197363_SNP [dm3] 2R_23309840_SNP [dm6]	C	A	3.452e^-4	0.986	UPSTREAM Prosbeta5R1 INTERGENIC
2R	10851299	2R_10851299_SNP [dm3] 2R_14963794_SNP [dm6]	C	A	3.452e^-4	0.986	UTR_5_PRIME ckn UPSTREAM aPKC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	5636654	3L_5636654_SNP [dm3] 3L_5643554_SNP [dm6]	A	T	3.465e^-4	0.986	UPSTREAM Blimp-1 INTRON Blimp-1
3L	2711161	3L_2711161_SNP [dm3] 3L_2711161_SNP [dm6]	C	T	3.468e^-4	0.986	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15670824	2R_15670824_DEL [dm3] 2R_19783319_DEL [dm6]	TAGGCAG	T	3.498e^-4	0.986	UPSTREAM CR45231 DOWNSTREAM Obp56g INTERGENIC
2L	1553006	2L_1553006_SNP [dm3] 2L_1553006_SNP [dm6]	A	C	3.502e^-4	0.986	INTERGENIC
X	6093362	X_6093362_SNP [dm3] X_6199329_SNP [dm6]	A	G	3.507e^-4	0.986	NON_SYNONYMOUS_CODING CG43090 UPSTREAM CG32751 DOWNSTREAM vanin-like
3L	6989346	3L_6989346_SNP [dm3] 3L_6996246_SNP [dm6]	T	A	3.512e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_zfh1
3R	9547431	3R_9547431_SNP [dm3] 3R_13721709_SNP [dm6]	A	T	3.514e^-4	0.986	INTRON CG34383
2R	13979756	2R_13979756_SNP [dm3] 2R_18092251_SNP [dm6]	T	C	3.519e^-4	0.986	INTRON CG34386
3R	8986293	3R_8986293_SNP [dm3] 3R_13160571_SNP [dm6]	T	C	3.521e^-4	0.986	INTRON timeout
2R	15703888	2R_15703888_INS [dm3] 2R_19816383_INS [dm6]	A	AGTTG	3.523e^-4	0.986	DOWNSTREAM Obp56h INTERGENIC
2R	8092493	2R_8092493_SNP [dm3] 2R_12204988_SNP [dm6]	T	A	3.531e^-4	0.986	INTERGENIC
2R	10941000	2R_10941000_SNP [dm3] 2R_15053495_SNP [dm6]	G	A	3.533e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11823025	2L_11823025_SNP [dm3] 2L_11823025_SNP [dm6]	C	T	3.537e^-4	0.986	INTRON Pde1c
3R	18990768	3R_18990768_SNP [dm3] 3R_23165046_SNP [dm6]	T	G	3.539e^-4	0.986	INTERGENIC
2R	8101436	2R_8101436_SNP [dm3] 2R_12213931_SNP [dm6]	A	T	3.543e^-4	0.986	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11904014	2R_11904014_SNP [dm3] 2R_16016509_SNP [dm6]	C	T	3.544e^-4	0.986	DOWNSTREAM Rrp42 INTRON CG8397
3L	12770442	3L_12770442_SNP [dm3] 3L_12777342_SNP [dm6]	C	G	3.547e^-4	0.986	SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13047177	3L_13047177_SNP [dm3] 3L_13054077_SNP [dm6]	T	C	3.563e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16522189	3L_16522189_SNP [dm3] 3L_16529089_SNP [dm6]	C	T	3.572e^-4	0.986	INTRON CG43373
3L	4146013	3L_4146013_SNP [dm3] 3L_4146013_SNP [dm6]	G	T	3.575e^-4	0.986	DOWNSTREAM CG32260 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14141153	2R_14141153_SNP [dm3] 2R_18253648_SNP [dm6]	G	C	3.577e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13940377	2L_13940377_SNP [dm3] 2L_13940377_SNP [dm6]	T	A	3.581e^-4	0.986	INTRON Ance-3
X	7773911	X_7773911_SNP [dm3] X_7879878_SNP [dm6]	G	A	3.583e^-4	0.986	SYNONYMOUS_CODING Ir7e
X	13729203	X_13729203_SNP [dm3] X_13835170_SNP [dm6]	A	G	3.597e^-4	0.986	INTRON AMPdeam
3L	20313549	3L_20313549_SNP [dm3] 3L_20320449_SNP [dm6]	A	G	3.598e^-4	0.986	UPSTREAM Spn77Bb DOWNSTREAM Spn77Ba INTERGENIC
2L	14033316	2L_14033316_SNP [dm3] 2L_14033316_SNP [dm6]	T	A	3.607e^-4	0.986	EXON CR45284
3L	9758353	3L_9758353_SNP [dm3] 3L_9765253_SNP [dm6]	C	T	3.607e^-4	0.986	INTRON CG8177
3R	10843915	3R_10843915_SNP [dm3] 3R_15018193_SNP [dm6]	C	A	3.628e^-4	0.986	INTERGENIC
2L	15096952	2L_15096952_SNP [dm3] 2L_15096952_SNP [dm6]	T	C	3.634e^-4	0.986	DOWNSTREAM CG15270 INTERGENIC
2L	17681134	2L_17681134_DEL [dm3] 2L_17681134_DEL [dm6]	TA	G	3.637e^-4	0.986	INTRON CadN
2L	12827057	2L_12827057_SNP [dm3] 2L_12827057_SNP [dm6]	T	A	3.639e^-4	0.986	INTERGENIC
2L	5914949	2L_5914949_SNP [dm3] 2L_5914949_SNP [dm6]	A	T	3.640e^-4	0.986	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
2R	11177355	2R_11177355_SNP [dm3] 2R_15289850_SNP [dm6]	G	A	3.643e^-4	0.986	INTRON Trpm
2L	12689310	2L_12689310_SNP [dm3] 2L_12689310_SNP [dm6]	C	T	3.663e^-4	0.986	INTERGENIC
X	1447421	X_1447421_SNP [dm3] X_1553388_SNP [dm6]	A	C	3.670e^-4	0.986	NON_SYNONYMOUS_CODING Mur2B INTRON Mur2B	TF binding site mE1_TFBS_chinmo
3L	6934474	3L_6934474_SNP [dm3] 3L_6941374_SNP [dm6]	T	A	3.681e^-4	0.986	INTERGENIC
3R	9031918	3R_9031918_SNP [dm3] 3R_13206196_SNP [dm6]	C	A	3.694e^-4	0.986	INTERGENIC
2L	5406774	2L_5406774_SNP [dm3] 2L_5406774_SNP [dm6]	A	G	3.695e^-4	0.986	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4472569	2L_4472569_SNP [dm3] 2L_4472569_SNP [dm6]	C	T	3.697e^-4	0.986	INTRON ine
2L	15140448	2L_15140448_SNP [dm3] 2L_15140448_SNP [dm6]	A	C	3.705e^-4	0.986	INTERGENIC
2L	1548748	2L_1548748_SNP [dm3] 2L_1548748_SNP [dm6]	G	A	3.709e^-4	0.986	INTERGENIC
3L	14304408	3L_14304408_SNP [dm3] 3L_14311308_SNP [dm6]	G	A	3.712e^-4	0.986	INTRON fz
2R	8092831	2R_8092831_SNP [dm3] 2R_12205326_SNP [dm6]	G	A	3.716e^-4	0.986	UPSTREAM CR45276 INTERGENIC
2L	5908010	2L_5908010_SNP [dm3] 2L_5908010_SNP [dm6]	G	T	3.728e^-4	0.986	DOWNSTREAM CG14000 INTRON bchs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12572205	2R_12572205_SNP [dm3] 2R_16684700_SNP [dm6]	T	A	3.730e^-4	0.986	UPSTREAM CG30463 INTRON CG30463
3L	12406583	3L_12406583_SNP [dm3] 3L_12413483_SNP [dm6]	G	A	3.732e^-4	0.986	SYNONYMOUS_CODING CG32103
2L	12828337	2L_12828337_SNP [dm3] 2L_12828337_SNP [dm6]	G	T	3.736e^-4	0.986	INTERGENIC
3R	21746780	3R_21746780_DEL [dm3] 3R_25921058_DEL [dm6]	TTTGT	T	3.744e^-4	0.986	UTR_3_PRIME CG14546 DOWNSTREAM CG42235
3R	22877107	3R_22877107_SNP [dm3] 3R_27051385_SNP [dm6]	G	A	3.747e^-4	0.986	DOWNSTREAM TwdlT INTRON RYa-R
3R	23984927	3R_23984927_SNP [dm3] 3R_28159205_SNP [dm6]	A	G	3.749e^-4	0.986	INTRON CG34354
3R	9163257	3R_9163257_SNP [dm3] 3R_13337535_SNP [dm6]	A	C	3.751e^-4	0.986	UPSTREAM PK2-R1 INTERGENIC
3R	21414544	3R_21414544_SNP [dm3] 3R_25588822_SNP [dm6]	C	G	3.752e^-4	0.986	DOWNSTREAM mir-1000 INTRON msi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16973761	X_16973761_SNP [dm3] X_17079728_SNP [dm6]	A	G	3.754e^-4	0.986	UTR_3_PRIME CG4949 DOWNSTREAM CG8945	TF binding site mE1_TFBS_cad
2R	19138662	2R_19138662_SNP [dm3] 2R_23251139_SNP [dm6]	G	T	3.759e^-4	0.986	INTERGENIC
2R	12059530	2R_12059530_SNP [dm3] 2R_16172025_SNP [dm6]	T	C	3.761e^-4	0.986	INTRON Ptp52F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	7886563	2R_7886563_SNP [dm3] 2R_11999058_SNP [dm6]	G	A	3.763e^-4	0.986	INTERGENIC
3R	9163341	3R_9163341_SNP [dm3] 3R_13337619_SNP [dm6]	A	G	3.782e^-4	0.986	UPSTREAM PK2-R1 INTERGENIC
3R	26475737	3R_26475737_SNP [dm3] 3R_30650015_SNP [dm6]	C	A	3.786e^-4	0.986	SYNONYMOUS_CODING CG34433 DOWNSTREAM CG34432	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4159861	3L_4159861_SNP [dm3] 3L_4159861_SNP [dm6]	C	A	3.790e^-4	0.986	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	23535187	3R_23535187_SNP [dm3] 3R_27709465_SNP [dm6]	G	A	3.800e^-4	0.986	INTRON CG12877	TF binding site mE1_TFBS_cad
3R	21128234	3R_21128234_DEL [dm3] 3R_25302512_DEL [dm6]	CTGAACC	C	3.807e^-4	0.986	UTR_5_PRIME CG31370 DOWNSTREAM CG13659
3R	21128993	3R_21128993_SNP [dm3] 3R_25303271_SNP [dm6]	C	T	3.810e^-4	0.986	SYNONYMOUS_CODING CG31370 UPSTREAM CG31436 DOWNSTREAM CG13659
2L	13610854	2L_13610854_SNP [dm3] 2L_13610854_SNP [dm6]	C	G	3.815e^-4	0.986	DOWNSTREAM mir-2489 INTRON kuz
3R	9547434	3R_9547434_INS [dm3] 3R_13721712_INS [dm6]	A	ATTTGCATTTTTA...	3.817e^-4	0.986	INTRON CG34383
3L	13332818	3L_13332818_SNP [dm3] 3L_13339718_SNP [dm6]	A	G	3.819e^-4	0.986	INTERGENIC
X	878176	X_878176_SNP [dm3] X_984143_SNP [dm6]	T	G	3.822e^-4	0.986	INTERGENIC
2L	5822864	2L_5822864_SNP [dm3] 2L_5822864_SNP [dm6]	G	A	3.829e^-4	0.986	INTERGENIC
2R	8101441	2R_8101441_SNP [dm3] 2R_12213936_SNP [dm6]	T	A	3.833e^-4	0.986	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15703554	2R_15703554_SNP [dm3] 2R_19816049_SNP [dm6]	C	G	3.848e^-4	0.986	UTR_3_PRIME Obp56h
2L	1390687	2L_1390687_SNP [dm3] 2L_1390687_SNP [dm6]	A	G	3.852e^-4	0.986	INTRON lea
2R	9738512	2R_9738512_SNP [dm3] 2R_13851007_SNP [dm6]	G	A	3.866e^-4	0.986	NON_SYNONYMOUS_CODING CG30485
X	3525781	X_3525781_SNP [dm3] X_3631748_SNP [dm6]	A	T	3.876e^-4	0.986	INTRON AstA-R1
2L	19086934	2L_19086934_SNP [dm3] 2L_19086934_SNP [dm6]	G	A	3.880e^-4	0.986	INTRON Lim3
2R	14883056	2R_14883056_SNP [dm3] 2R_18995551_SNP [dm6]	T	G	3.892e^-4	0.986	DOWNSTREAM snoRNA:abba-a INTRON tn
X	9691007	X_9691007_SNP [dm3] X_9796974_SNP [dm6]	T	A	3.905e^-4	0.986	INTRON CG32698
3R	26043334	3R_26043334_SNP [dm3] 3R_30217612_SNP [dm6]	T	C	3.915e^-4	0.986	DOWNSTREAM CecC INTERGENIC
3R	26568615	3R_26568615_SNP [dm3] 3R_30742893_SNP [dm6]	C	A	3.915e^-4	0.986	UTR_5_PRIME CG15543
3R	25519039	3R_25519039_DEL [dm3] 3R_29693317_DEL [dm6]	AAAAC	A	3.916e^-4	0.986	INTRON dmrt99B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8872475	3L_8872475_SNP [dm3] 3L_8879375_SNP [dm6]	A	T	3.929e^-4	0.986	INTRON dally
2L	10224000	2L_10224000_SNP [dm3] 2L_10224000_SNP [dm6]	C	T	3.942e^-4	0.986	SYNONYMOUS_CODING CG4908 DOWNSTREAM CG5708	TF binding site mE1_TFBS_sens
2R	8730985	2R_8730985_SNP [dm3] 2R_12843480_SNP [dm6]	G	A	3.947e^-4	0.986	SYNONYMOUS_CODING Or49b UPSTREAM Cyp9h1	TF binding site BDTNP1_TFBS_twi
2R	8092475	2R_8092475_SNP [dm3] 2R_12204970_SNP [dm6]	A	T	3.948e^-4	0.986	INTERGENIC
2R	7891177	2R_7891177_SNP [dm3] 2R_12003672_SNP [dm6]	G	T	3.950e^-4	0.986	SYNONYMOUS_CODING otk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8063730	2R_8063730_SNP [dm3] 2R_12176225_SNP [dm6]	C	T	3.954e^-4	0.986	SYNONYMOUS_CODING Cct5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	15734117	2R_15734117_SNP [dm3] 2R_19846612_SNP [dm6]	G	T	3.955e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10148808	2L_10148808_SNP [dm3] 2L_10148808_SNP [dm6]	C	T	3.965e^-4	0.986	INTRON CG44153 & 1 other
2L	11799356	2L_11799356_SNP [dm3] 2L_11799356_SNP [dm6]	T	G	3.966e^-4	0.986	SYNONYMOUS_CODING crol	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	9211090	X_9211090_SNP [dm3] X_9317057_SNP [dm6]	A	T	3.969e^-4	0.986	DOWNSTREAM c12.1 INTERGENIC
3L	10441227	3L_10441227_SNP [dm3] 3L_10448127_SNP [dm6]	G	A	3.969e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17076358	3R_17076358_SNP [dm3] 3R_21250636_SNP [dm6]	T	G	3.971e^-4	0.986	INTRON ETHR
2L	10234368	2L_10234368_SNP [dm3] 2L_10234368_SNP [dm6]	A	T	3.976e^-4	0.986	UTR_3_PRIME eEF1delta DOWNSTREAM mthl15
2R	15465256	2R_15465256_SNP [dm3] 2R_19577751_SNP [dm6]	C	T	3.978e^-4	0.986	INTRON sm
2L	19207364	2L_19207364_SNP [dm3] 2L_19207364_SNP [dm6]	T	C	3.992e^-4	0.986	SYNONYMOUS_CODING drl
2R	8084431	2R_8084431_SNP [dm3] 2R_12196926_SNP [dm6]	G	A	4.006e^-4	0.986	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
2L	1475349	2L_1475349_SNP [dm3] 2L_1475349_SNP [dm6]	T	A	4.008e^-4	0.986	INTERGENIC
2R	11906639	2R_11906639_SNP [dm3] 2R_16019134_SNP [dm6]	C	T	4.011e^-4	0.986	INTRON CG8399
X	14884147	X_14884147_SNP [dm3] X_14990114_SNP [dm6]	T	C	4.012e^-4	0.986	INTRON eag
X	5954122	X_5954122_SNP [dm3] X_6060089_SNP [dm6]	C	A	4.013e^-4	0.986	SYNONYMOUS_CODING CG5921	TF binding site mE1_TFBS_chinmo
2L	9965613	2L_9965613_SNP [dm3] 2L_9965613_SNP [dm6]	C	G	4.014e^-4	0.986	SYNONYMOUS_CODING Dref
2R	11745408	2R_11745408_SNP [dm3] 2R_15857903_SNP [dm6]	C	T	4.022e^-4	0.986	SYNONYMOUS_CODING Gpo-1 DOWNSTREAM CG12970
2R	17676886	2R_17676886_SNP [dm3] 2R_21789381_SNP [dm6]	A	C	4.031e^-4	0.986	DOWNSTREAM lox2 INTERGENIC
3R	22453390	3R_22453390_INS [dm3] 3R_26627668_INS [dm6]	A	ACCTCTGAA	4.033e^-4	0.986	UPSTREAM TwdlO DOWNSTREAM TwdlK INTERGENIC
3R	15514281	3R_15514281_INS [dm3] 3R_19688559_INS [dm6]	C	CCCACAC	4.036e^-4	0.986	INTRON Naam	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	878091	X_878091_SNP [dm3] X_984058_SNP [dm6]	G	T	4.036e^-4	0.986	INTERGENIC
3L	4196562	3L_4196562_SNP [dm3] 3L_4196562_SNP [dm6]	G	A	4.037e^-4	0.986	SYNONYMOUS_CODING CG43367
2L	14628231	2L_14628231_SNP [dm3] 2L_14628231_SNP [dm6]	T	A	4.046e^-4	0.986	INTRON osp	TF binding site mE1_TFBS_HSA
3L	14367626	3L_14367626_SNP [dm3] 3L_14374526_SNP [dm6]	G	C	4.051e^-4	0.986	INTERGENIC
2R	11171642	2R_11171642_SNP [dm3] 2R_15284137_SNP [dm6]	A	G	4.063e^-4	0.986	INTRON Trpm
2L	3671721	2L_3671721_SNP [dm3] 2L_3671721_SNP [dm6]	G	C	4.064e^-4	0.986	INTRON CG34340
2L	13568384	2L_13568384_SNP [dm3] 2L_13568384_SNP [dm6]	G	C	4.067e^-4	0.986	INTRON kuz
2R	8092479	2R_8092479_SNP [dm3] 2R_12204974_SNP [dm6]	G	T	4.070e^-4	0.986	INTERGENIC
2L	2675337	2L_2675337_SNP [dm3] 2L_2675337_SNP [dm6]	A	G	4.072e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9031455	3R_9031455_INS [dm3] 3R_13205733_INS [dm6]	C	CTACGG	4.076e^-4	0.986	INTERGENIC
X	8391341	X_8391341_SNP [dm3] X_8497308_SNP [dm6]	T	C	4.085e^-4	0.986	INTRON CG33181
3R	23403372	3R_23403372_SNP [dm3] 3R_27577650_SNP [dm6]	C	T	4.087e^-4	0.986	INTRON wdb
2L	1371405	2L_1371405_SNP [dm3] 2L_1371405_SNP [dm6]	T	C	4.091e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_Med
2L	13948725	2L_13948725_SNP [dm3] 2L_13948725_SNP [dm6]	G	T	4.094e^-4	0.986	INTRON Ance-3
3R	22909993	3R_22909993_SNP [dm3] 3R_27084271_SNP [dm6]	G	T	4.097e^-4	0.986	INTRON Cpr97Ea	TF binding site mE1_TFBS_cad
3R	13127872	3R_13127872_SNP [dm3] 3R_17302150_SNP [dm6]	T	C	4.103e^-4	0.986	INTERGENIC
3R	10378811	3R_10378811_SNP [dm3] 3R_14553089_SNP [dm6]	T	C	4.109e^-4	0.986	INTRON Pde6
2R	8090853	2R_8090853_SNP [dm3] 2R_12203348_SNP [dm6]	A	C	4.111e^-4	0.986	INTERGENIC
3R	9310104	3R_9310104_SNP [dm3] 3R_13484382_SNP [dm6]	C	A	4.114e^-4	0.986	INTERGENIC
2L	6619263	2L_6619263_DEL [dm3] 2L_6619263_DEL [dm6]	TCT	T	4.117e^-4	0.986	INTRON CG11320 EXON CR44913
3R	21126467	3R_21126467_SNP [dm3] 3R_25300745_SNP [dm6]	T	A	4.124e^-4	0.986	UPSTREAM CG13659 INTERGENIC
X	14964512	X_14964512_SNP [dm3] X_15070479_SNP [dm6]	C	A	4.133e^-4	0.986	UTR_3_PRIME Lsd-2 DOWNSTREAM Lsd-2
X	14083941	X_14083941_SNP [dm3] X_14189908_SNP [dm6]	G	A	4.135e^-4	0.986	SYNONYMOUS_CODING CG11585	TF binding site mE1_TFBS_chinmo
2R	15070156	2R_15070156_SNP [dm3] 2R_19182651_SNP [dm6]	C	G	4.141e^-4	0.986	INTRON hppy
2R	8068499	2R_8068499_SNP [dm3] 2R_12180994_SNP [dm6]	G	A	4.145e^-4	0.986	SYNONYMOUS_CODING wash	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12156666	2L_12156666_SNP [dm3] 2L_12156666_SNP [dm6]	A	G	4.155e^-4	0.986	INTRON CG31760
3R	22877647	3R_22877647_SNP [dm3] 3R_27051925_SNP [dm6]	C	T	4.157e^-4	0.986	DOWNSTREAM TwdlT INTRON RYa-R
2L	12317333	2L_12317333_SNP [dm3] 2L_12317333_SNP [dm6]	C	T	4.175e^-4	0.986	UPSTREAM CR45283 INTERGENIC
2R	19138664	2R_19138664_SNP [dm3] 2R_23251141_SNP [dm6]	A	G	4.181e^-4	0.986	INTERGENIC
2R	10851233	2R_10851233_SNP [dm3] 2R_14963728_SNP [dm6]	T	C	4.190e^-4	0.986	START_GAINED ckn UTR_5_PRIME ckn UPSTREAM aPKC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	11903475	2R_11903475_SNP [dm3] 2R_16015970_SNP [dm6]	A	T	4.196e^-4	0.986	SYNONYMOUS_CODING Rrp42 DOWNSTREAM CG8397	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	15703764	2R_15703764_SNP [dm3] 2R_19816259_SNP [dm6]	A	C	4.200e^-4	0.986	DOWNSTREAM Obp56h INTERGENIC
3L	12585656	3L_12585656_SNP [dm3] 3L_12592556_SNP [dm6]	G	T	4.206e^-4	0.986	INTRON ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22453406	3R_22453406_SNP [dm3] 3R_26627684_SNP [dm6]	T	A	4.209e^-4	0.986	UPSTREAM TwdlO DOWNSTREAM TwdlK INTERGENIC
2R	16048648	2R_16048648_SNP [dm3] 2R_20161143_SNP [dm6]	T	A	4.210e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	591213	3L_591213_SNP [dm3] 3L_591213_SNP [dm6]	T	C	4.216e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5908019	2L_5908019_SNP [dm3] 2L_5908019_SNP [dm6]	T	C	4.217e^-4	0.986	DOWNSTREAM CG14000 INTRON bchs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	18117552	2R_18117552_SNP [dm3] 2R_22230047_SNP [dm6]	A	C	4.223e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25503111	3R_25503111_SNP [dm3] 3R_29677389_SNP [dm6]	A	G	4.239e^-4	0.986	INTRON Cap-D2
2R	11745180	2R_11745180_SNP [dm3] 2R_15857675_SNP [dm6]	G	A	4.241e^-4	0.986	DOWNSTREAM Gpo-1 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9163219	3R_9163219_SNP [dm3] 3R_13337497_SNP [dm6]	C	T	4.251e^-4	0.986	UPSTREAM PK2-R1 INTERGENIC
3L	6772662	3L_6772662_SNP [dm3] 3L_6779562_SNP [dm6]	G	A	4.254e^-4	0.986	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs
3R	26572902	3R_26572902_SNP [dm3] 3R_30747180_SNP [dm6]	G	T	4.255e^-4	0.986	UPSTREAM Npc2h & 1 other INTERGENIC
2L	14374725	2L_14374725_SNP [dm3] 2L_14374725_SNP [dm6]	T	C	4.257e^-4	0.986	INTERGENIC
2L	8230692	2L_8230692_SNP [dm3] 2L_8230692_SNP [dm6]	T	G	4.260e^-4	0.986	UPSTREAM Pvr INTRON Pvr
2R	14668356	2R_14668356_SNP [dm3] 2R_18780851_SNP [dm6]	A	G	4.281e^-4	0.986	INTERGENIC
2R	9521466	2R_9521466_SNP [dm3] 2R_13633961_SNP [dm6]	T	C	4.284e^-4	0.986	INTRON fas
X	16054824	X_16054824_SNP [dm3] X_16160791_SNP [dm6]	C	T	4.288e^-4	0.986	INTERGENIC
2R	17336065	2R_17336065_SNP [dm3] 2R_21448560_SNP [dm6]	G	A	4.291e^-4	0.986	INTRON Sdc	TF binding site mE1_TFBS_sens
2R	13940944	2R_13940944_INS [dm3] 2R_18053439_INS [dm6]	C	CGA	4.303e^-4	0.986	INTRON CG10911
2R	8067090	2R_8067090_SNP [dm3] 2R_12179585_SNP [dm6]	T	C	4.312e^-4	0.986	UTR_3_PRIME CG8860 UPSTREAM wash EXON CR45264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	11903797	2R_11903797_SNP [dm3] 2R_16016292_SNP [dm6]	T	C	4.317e^-4	0.986	DOWNSTREAM Rrp42 INTRON CG8397	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	8101433	2R_8101433_SNP [dm3] 2R_12213928_SNP [dm6]	T	C	4.320e^-4	0.986	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12403889	3L_12403889_SNP [dm3] 3L_12410789_SNP [dm6]	T	C	4.323e^-4	0.986	INTRON CG32103
3R	9076308	3R_9076308_SNP [dm3] 3R_13250586_SNP [dm6]	T	C	4.326e^-4	0.986	INTRON Ace
2R	8096106	2R_8096106_SNP [dm3] 2R_12208601_SNP [dm6]	A	G	4.327e^-4	0.986	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
3R	2991963	3R_2991963_SNP [dm3] 3R_7166241_SNP [dm6]	T	G	4.332e^-4	0.986	INTRON sas
3R	14982500	3R_14982500_SNP [dm3] 3R_19156778_SNP [dm6]	C	A	4.337e^-4	0.986	UTR_5_PRIME CG11779 UPSTREAM nos INTRON CG11779	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	4196328	3L_4196328_SNP [dm3] 3L_4196328_SNP [dm6]	C	A	4.340e^-4	0.986	INTRON CG43367
X	1455931	X_1455931_SNP [dm3] X_1561898_SNP [dm6]	G	A	4.359e^-4	0.986	INTRON Mur2B
2R	17325443	2R_17325443_SNP [dm3] 2R_21437938_SNP [dm6]	A	T	4.362e^-4	0.986	INTRON Sdc
2R	14879690	2R_14879690_SNP [dm3] 2R_18992185_SNP [dm6]	C	T	4.368e^-4	0.986	INTRON tn
3L	20345764	3L_20345764_SNP [dm3] 3L_20352664_SNP [dm6]	G	A	4.369e^-4	0.986	UPSTREAM CG5618 DOWNSTREAM eRF1 INTRON eRF1
3L	13074214	3L_13074214_SNP [dm3] 3L_13081114_SNP [dm6]	G	A	4.369e^-4	0.986	DOWNSTREAM CR43652 INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	13782123	2R_13782123_SNP [dm3] 2R_17894618_SNP [dm6]	T	C	4.382e^-4	0.986	UPSTREAM CG14491 & 1 other INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	8828579	2L_8828579_SNP [dm3] 2L_8828579_SNP [dm6]	C	A	4.392e^-4	0.986	NON_SYNONYMOUS_CODING SoxN UTR_3_PRIME SoxN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	2415482	2L_2415482_DEL [dm3] 2L_2415482_DEL [dm6]	TTAT	T	4.393e^-4	0.986	UTR_3_PRIME CG31948 UPSTREAM CG18641
2R	13975259	2R_13975259_SNP [dm3] 2R_18087754_SNP [dm6]	G	A	4.404e^-4	0.986	INTRON CG34386
2R	15703767	2R_15703767_SNP [dm3] 2R_19816262_SNP [dm6]	T	A	4.404e^-4	0.986	DOWNSTREAM Obp56h INTERGENIC
3R	9076317	3R_9076317_DEL [dm3] 3R_13250595_DEL [dm6]	AG	A	4.407e^-4	0.986	INTRON Ace
2L	8215399	2L_8215399_DEL [dm3] 2L_8215399_DEL [dm6]	ATTGA	A	4.414e^-4	0.986	UPSTREAM CG8349 DOWNSTREAM CG8353 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15134605	2L_15134605_SNP [dm3] 2L_15134605_SNP [dm6]	A	G	4.429e^-4	0.986	INTERGENIC
2L	9234883	2L_9234883_SNP [dm3] 2L_9234883_SNP [dm6]	G	A	4.434e^-4	0.986	INTRON tai	TF binding site mE1_TFBS_inv
X	3363969	X_3363969_SNP [dm3] X_3469936_SNP [dm6]	T	C	4.443e^-4	0.986	INTRON CR44999 & 1 other
2L	8328299	2L_8328299_SNP [dm3] 2L_8328299_SNP [dm6]	C	G	4.452e^-4	0.986	UPSTREAM CG14275 INTRON CG14275
2L	12823663	2L_12823663_SNP [dm3] 2L_12823663_SNP [dm6]	C	G	4.460e^-4	0.986	UPSTREAM kek1 INTERGENIC
3L	12247120	3L_12247120_MNP [dm3] 3L_12254020_MNP [dm6]	TGT	AAC	4.470e^-4	0.986	INTRON app
3R	9595896	3R_9595896_SNP [dm3] 3R_13770174_SNP [dm6]	T	C	4.484e^-4	0.986	INTRON Cht5
3R	9710918	3R_9710918_SNP [dm3] 3R_13885196_SNP [dm6]	G	T	4.498e^-4	0.986	INTERGENIC
3R	22461117	3R_22461117_SNP [dm3] 3R_26635395_SNP [dm6]	A	G	4.499e^-4	0.986	SYNONYMOUS_CODING TwdlR DOWNSTREAM TwdlH
2L	10676630	2L_10676630_SNP [dm3] 2L_10676630_SNP [dm6]	T	C	4.500e^-4	0.986	UPSTREAM CG17104 INTERGENIC
2R	8093736	2R_8093736_SNP [dm3] 2R_12206231_SNP [dm6]	G	T	4.500e^-4	0.986	EXON CR45276	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16927039	2R_16927039_SNP [dm3] 2R_21039534_SNP [dm6]	T	A	4.508e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	4360189	2R_4360189_SNP [dm3] 2R_8472684_SNP [dm6]	G	A	4.508e^-4	0.986	SYNONYMOUS_CODING Mal-A8
3R	14278542	3R_14278542_SNP [dm3] 3R_18452820_SNP [dm6]	T	A	4.512e^-4	0.986	INTRON fru
2L	13568336	2L_13568336_SNP [dm3] 2L_13568336_SNP [dm6]	C	A	4.525e^-4	0.986	INTRON kuz
3R	21126504	3R_21126504_SNP [dm3] 3R_25300782_SNP [dm6]	C	T	4.536e^-4	0.986	UPSTREAM CG13659 INTERGENIC
3R	2562405	3R_2562405_SNP [dm3] 3R_6736683_SNP [dm6]	A	T	4.537e^-4	0.986	INTRON pb	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	4039680	3R_4039680_SNP [dm3] 3R_8213958_SNP [dm6]	C	A	4.539e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15134599	2L_15134599_DEL [dm3] 2L_15134599_DEL [dm6]	TA	T	4.542e^-4	0.986	INTERGENIC
3R	9427901	3R_9427901_SNP [dm3] 3R_13602179_SNP [dm6]	A	G	4.545e^-4	0.986	INTERGENIC
X	9246455	X_9246455_SNP [dm3] X_9352422_SNP [dm6]	G	T	4.547e^-4	0.986	INTRON CG34449	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10893520	2L_10893520_SNP [dm3] 2L_10893520_SNP [dm6]	A	C	4.555e^-4	0.986	INTERGENIC
2R	9724998	2R_9724998_SNP [dm3] 2R_13837493_SNP [dm6]	C	A	4.557e^-4	0.986	INTRON CG6347
2R	9146167	2R_9146167_SNP [dm3] 2R_13258662_SNP [dm6]	T	A	4.559e^-4	0.986	DOWNSTREAM CG10799 INTERGENIC
3R	19883647	3R_19883647_SNP [dm3] 3R_24057925_SNP [dm6]	A	C	4.560e^-4	0.986	UPSTREAM SMC1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_ttk
2R	7994238	2R_7994238_SNP [dm3] 2R_12106733_SNP [dm6]	T	G	4.562e^-4	0.986	INTRON jeb
2R	18363533	2R_18363533_SNP [dm3] 2R_22476028_SNP [dm6]	A	T	4.564e^-4	0.986	DOWNSTREAM CG45063 INTRON CG45062
2L	18419395	2L_18419395_SNP [dm3] 2L_18419395_SNP [dm6]	A	G	4.565e^-4	0.986	INTERGENIC
2L	17814637	2L_17814637_SNP [dm3] 2L_17814637_SNP [dm6]	G	A	4.565e^-4	0.986	INTRON CadN2
2L	12830511	2L_12830511_SNP [dm3] 2L_12830511_SNP [dm6]	G	T	4.568e^-4	0.986	INTERGENIC
2R	8024331	2R_8024331_SNP [dm3] 2R_12136826_SNP [dm6]	A	T	4.575e^-4	0.986	INTERGENIC
3L	9984099	3L_9984099_SNP [dm3] 3L_9990999_SNP [dm6]	T	A	4.594e^-4	0.986	INTRON dpr6
3L	14367753	3L_14367753_SNP [dm3] 3L_14374653_SNP [dm6]	A	G	4.599e^-4	0.986	INTERGENIC
2R	8063706	2R_8063706_SNP [dm3] 2R_12176201_SNP [dm6]	G	C	4.610e^-4	0.986	SYNONYMOUS_CODING Cct5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	12561426	3L_12561426_SNP [dm3] 3L_12568326_SNP [dm6]	T	G	4.619e^-4	0.986	INTRON sowah
2L	10871841	2L_10871841_SNP [dm3] 2L_10871841_SNP [dm6]	C	T	4.631e^-4	0.986	UPSTREAM CR45454 DOWNSTREAM CR45453 INTERGENIC
3R	3692109	3R_3692109_SNP [dm3] 3R_7866387_SNP [dm6]	A	G	4.634e^-4	0.986	INTRON CG17816
3R	9595913	3R_9595913_SNP [dm3] 3R_13770191_SNP [dm6]	A	T	4.636e^-4	0.986	INTRON Cht5
3R	9076302	3R_9076302_SNP [dm3] 3R_13250580_SNP [dm6]	A	T	4.641e^-4	0.986	INTRON Ace
3L	14367731	3L_14367731_SNP [dm3] 3L_14374631_SNP [dm6]	G	C	4.642e^-4	0.986	INTERGENIC
2L	14873127	2L_14873127_SNP [dm3] 2L_14873127_SNP [dm6]	A	G	4.655e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14448509	2L_14448509_SNP [dm3] 2L_14448509_SNP [dm6]	G	A	4.660e^-4	0.986	EXON CR45726	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11526243	X_11526243_SNP [dm3] X_11632210_SNP [dm6]	G	A	4.661e^-4	0.986	INTRON Ptp10D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19021626	X_19021626_SNP [dm3] X_19127593_SNP [dm6]	G	C	4.670e^-4	0.986	UPSTREAM tgy INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4014154	X_4014154_SNP [dm3] X_4120121_SNP [dm6]	C	T	4.671e^-4	0.986	UPSTREAM tyf INTRON tyf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18563250	3L_18563250_SNP [dm3] 3L_18570150_SNP [dm6]	C	A	4.684e^-4	0.986	INTRON AstC-R1
3R	14333603	3R_14333603_SNP [dm3] 3R_18507881_SNP [dm6]	G	T	4.685e^-4	0.986	INTRON fru
3L	7118774	3L_7118774_SNP [dm3] 3L_7125674_SNP [dm6]	T	G	4.698e^-4	0.986	UPSTREAM BBS1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	8090075	2R_8090075_SNP [dm3] 2R_12202570_SNP [dm6]	T	C	4.703e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9672281	2L_9672281_DEL [dm3] 2L_9672281_DEL [dm6]	CAAAGTC	C	4.710e^-4	0.986	INTERGENIC
3R	24251146	3R_24251146_SNP [dm3] 3R_28425424_SNP [dm6]	T	A	4.721e^-4	0.986	INTRON beat-VI
X	13740044	X_13740044_SNP [dm3] X_13846011_SNP [dm6]	T	C	4.721e^-4	0.986	UPSTREAM AMPdeam DOWNSTREAM mamo INTERGENIC
3L	17185700	3L_17185700_SNP [dm3] 3L_17192600_SNP [dm6]	C	T	4.721e^-4	0.986	INTRON Rbp6
2L	10894788	2L_10894788_SNP [dm3] 2L_10894788_SNP [dm6]	C	A	4.723e^-4	0.986	EXON CR44491	TF binding site mE1_TFBS_inv
2R	9572585	2R_9572585_SNP [dm3] 2R_13685080_SNP [dm6]	T	A	4.729e^-4	0.986	INTRON fas
3L	2147936	3L_2147936_SNP [dm3] 3L_2147936_SNP [dm6]	A	G	4.740e^-4	0.986	INTRON zormin
2L	13665220	2L_13665220_SNP [dm3] 2L_13665220_SNP [dm6]	G	A	4.741e^-4	0.986	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4409927	X_4409927_DEL [dm3] X_4515894_DEL [dm6]	CTTTCATTCTTTTTCAACAT...	C	4.745e^-4	0.986	INTRON CR32773
X	18350397	X_18350397_SNP [dm3] X_18456364_SNP [dm6]	G	A	4.745e^-4	0.986	INTRON CG32547	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	12689367	2L_12689367_SNP [dm3] 2L_12689367_SNP [dm6]	G	A	4.753e^-4	0.986	DOWNSTREAM CG5525 INTERGENIC
2R	8111112	2R_8111112_DEL [dm3] 2R_12223607_DEL [dm6]	TT	T	4.761e^-4	0.986	DOWNSTREAM CG8854 INTERGENIC
3L	15263917	3L_15263917_SNP [dm3] 3L_15270817_SNP [dm6]	C	G	4.775e^-4	0.986	INTERGENIC
X	5329971	X_5329971_SNP [dm3] X_5435938_SNP [dm6]	G	A	4.775e^-4	0.986	DOWNSTREAM CR44471 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13975285	2R_13975285_SNP [dm3] 2R_18087780_SNP [dm6]	T	C	4.777e^-4	0.986	INTRON CG34386
3L	3310924	3L_3310924_SNP [dm3] 3L_3310924_SNP [dm6]	C	A	4.780e^-4	0.986	INTRON ZnT63C
2L	15878682	2L_15878682_SNP [dm3] 2L_15878682_SNP [dm6]	A	T	4.783e^-4	0.986	NON_SYNONYMOUS_CODING CG7653	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17323545	2R_17323545_SNP [dm3] 2R_21436040_SNP [dm6]	C	T	4.785e^-4	0.986	INTRON Sdc
3R	9058432	3R_9058432_SNP [dm3] 3R_13232710_SNP [dm6]	A	G	4.793e^-4	0.986	SYNONYMOUS_CODING Ace
2R	10076399	2R_10076399_SNP [dm3] 2R_14188894_SNP [dm6]	G	T	4.794e^-4	0.986	NON_SYNONYMOUS_CODING CG30069
3L	812407	3L_812407_SNP [dm3] 3L_812407_SNP [dm6]	C	T	4.796e^-4	0.986	UPSTREAM CR44537 INTERGENIC
3L	812554	3L_812554_SNP [dm3] 3L_812554_SNP [dm6]	A	G	4.796e^-4	0.986	UPSTREAM CR44537 INTERGENIC
3L	812846	3L_812846_SNP [dm3] 3L_812846_SNP [dm6]	C	T	4.796e^-4	0.986	UPSTREAM CR44537 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	812859	3L_812859_SNP [dm3] 3L_812859_SNP [dm6]	T	C	4.796e^-4	0.986	UPSTREAM CR44537 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	813086	3L_813086_SNP [dm3] 3L_813086_SNP [dm6]	C	T	4.796e^-4	0.986	UPSTREAM CR44537 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5406744	2L_5406744_SNP [dm3] 2L_5406744_SNP [dm6]	A	T	4.800e^-4	0.986	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16494268	3R_16494268_DEL [dm3] 3R_20668546_DEL [dm6]	CTTC	C	4.801e^-4	0.986	INTERGENIC
2L	13070720	2L_13070720_SNP [dm3] 2L_13070720_SNP [dm6]	T	C	4.803e^-4	0.986	INTERGENIC
2R	8101497	2R_8101497_SNP [dm3] 2R_12213992_SNP [dm6]	C	T	4.805e^-4	0.986	UPSTREAM CG13171 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	1393737	2L_1393737_SNP [dm3] 2L_1393737_SNP [dm6]	T	C	4.808e^-4	0.986	INTRON lea
2R	4348946	2R_4348946_SNP [dm3] 2R_8461441_SNP [dm6]	A	C	4.809e^-4	0.986	DOWNSTREAM Mal-A4 INTERGENIC	transposable element FlyBase
2R	17846134	2R_17846134_SNP [dm3] 2R_21958629_SNP [dm6]	C	G	4.814e^-4	0.986	INTERGENIC
2R	8734287	2R_8734287_SNP [dm3] 2R_12846782_SNP [dm6]	T	C	4.816e^-4	0.986	UPSTREAM CG17575 DOWNSTREAM antr INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6489193	3R_6489193_SNP [dm3] 3R_10663471_SNP [dm6]	A	G	4.830e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_sens
3L	18401223	3L_18401223_INS [dm3] 3L_18408123_INS [dm6]	A	AA	4.831e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs
3L	7118720	3L_7118720_SNP [dm3] 3L_7125620_SNP [dm6]	C	T	4.832e^-4	0.986	UPSTREAM BBS1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	8759593	2L_8759593_SNP [dm3] 2L_8759593_SNP [dm6]	A	G	4.832e^-4	0.986	INTERGENIC
2R	11902497	2R_11902497_SNP [dm3] 2R_16014992_SNP [dm6]	A	T	4.832e^-4	0.986	SYNONYMOUS_CODING Rrp42 UPSTREAM Prosbeta1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	12848206	3L_12848206_DEL [dm3] 3L_12855106_DEL [dm6]	ACTTTCGC	A	4.833e^-4	0.986	INTRON Ent3
2R	19262562	2R_19262562_SNP [dm3] 2R_23375039_SNP [dm6]	A	G	4.834e^-4	0.986	SYNONYMOUS_CODING Golgin245	TF binding site mE1_TFBS_cad
2R	8092783	2R_8092783_SNP [dm3] 2R_12205278_SNP [dm6]	G	T	4.835e^-4	0.986	UPSTREAM CR45276 INTERGENIC
3L	17185722	3L_17185722_SNP [dm3] 3L_17192622_SNP [dm6]	T	A	4.841e^-4	0.986	INTRON Rbp6
2R	8092786	2R_8092786_SNP [dm3] 2R_12205281_SNP [dm6]	C	T	4.842e^-4	0.986	UPSTREAM CR45276 INTERGENIC
3R	18383580	3R_18383580_SNP [dm3] 3R_22557858_SNP [dm6]	A	T	4.853e^-4	0.986	DOWNSTREAM CG5278 INTERGENIC
3R	26567889	3R_26567889_SNP [dm3] 3R_30742167_SNP [dm6]	G	A	4.854e^-4	0.986	UPSTREAM CG15543 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14881541	2R_14881541_SNP [dm3] 2R_18994036_SNP [dm6]	C	T	4.856e^-4	0.986	SYNONYMOUS_CODING tn UPSTREAM snoRNA:abba-a
X	4705542	X_4705542_SNP [dm3] X_4811509_SNP [dm6]	A	T	4.873e^-4	0.986	INTERGENIC
2L	2551381	2L_2551381_SNP [dm3] 2L_2551381_SNP [dm6]	A	G	4.886e^-4	0.986	UTR_3_PRIME CG3515
3R	24033638	3R_24033638_SNP [dm3] 3R_28207916_SNP [dm6]	C	T	4.886e^-4	0.986	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14684071	3R_14684071_SNP [dm3] 3R_18858349_SNP [dm6]	G	T	4.899e^-4	0.986	INTERGENIC
3L	13019590	3L_13019590_SNP [dm3] 3L_13026490_SNP [dm6]	C	T	4.901e^-4	0.986	UPSTREAM Zmynd10 INTERGENIC	TF binding site mE1_TFBS_cad
2R	13978347	2R_13978347_SNP [dm3] 2R_18090842_SNP [dm6]	T	A	4.902e^-4	0.986	INTRON CG34386
2R	10549595	2R_10549595_DEL [dm3] 2R_14662090_DEL [dm6]	TT	T	4.907e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25503108	3R_25503108_SNP [dm3] 3R_29677386_SNP [dm6]	T	G	4.922e^-4	0.986	INTRON Cap-D2
3L	20345759	3L_20345759_SNP [dm3] 3L_20352659_SNP [dm6]	G	T	4.925e^-4	0.986	UPSTREAM CG5618 DOWNSTREAM eRF1 INTRON eRF1
3R	26574424	3R_26574424_SNP [dm3] 3R_30748702_SNP [dm6]	T	G	4.925e^-4	0.986	INTERGENIC
2R	8033261	2R_8033261_SNP [dm3] 2R_12145756_SNP [dm6]	G	C	4.938e^-4	0.986	UTR_5_PRIME Hen1 DOWNSTREAM CG8878
3L	13198050	3L_13198050_SNP [dm3] 3L_13204950_SNP [dm6]	C	T	4.943e^-4	0.986	INTERGENIC
2R	8092483	2R_8092483_SNP [dm3] 2R_12204978_SNP [dm6]	G	T	4.955e^-4	0.986	INTERGENIC
2R	4359757	2R_4359757_SNP [dm3] 2R_8472252_SNP [dm6]	C	A	4.956e^-4	0.986	SYNONYMOUS_CODING Mal-A8 UPSTREAM Mal-A7
2L	15125163	2L_15125163_SNP [dm3] 2L_15125163_SNP [dm6]	G	A	4.957e^-4	0.986	INTERGENIC
3L	20400641	3L_20400641_SNP [dm3] 3L_20407541_SNP [dm6]	A	C	4.967e^-4	0.986	UTR_3_PRIME CG13248	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	6837564	3L_6837564_SNP [dm3] 3L_6844464_SNP [dm6]	T	C	4.973e^-4	0.986	INTERGENIC
2R	8087280	2R_8087280_SNP [dm3] 2R_12199775_SNP [dm6]	T	C	4.986e^-4	0.986	UPSTREAM CG8858 & 2 others INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	12848159	3L_12848159_SNP [dm3] 3L_12855059_SNP [dm6]	T	A	4.987e^-4	0.986	INTRON Ent3
2R	12964635	2R_12964635_INS [dm3] 2R_17077130_INS [dm6]	T	TT	4.995e^-4	0.986	UPSTREAM CG30460 INTRON CG30460
2R	7842766	2R_7842766_SNP [dm3] 2R_11955261_SNP [dm6]	C	T	5.001e^-4	0.986	INTRON CG13188
3L	12429587	3L_12429587_SNP [dm3] 3L_12436487_SNP [dm6]	G	A	5.008e^-4	0.986	INTERGENIC
3R	9698959	3R_9698959_INS [dm3] 3R_13873237_INS [dm6]	TC	CGG	5.011e^-4	0.986	INTRON E5	TF binding site mE1_TFBS_cad
2R	19244182	2R_19244182_SNP [dm3] 2R_23356659_SNP [dm6]	G	A	5.012e^-4	0.986	SYNONYMOUS_CODING CG3500 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	8110464	2R_8110464_SNP [dm3] 2R_12222959_SNP [dm6]	G	C	5.014e^-4	0.986	INTERGENIC
2R	8100000	2R_8100000_SNP [dm3] 2R_12212495_SNP [dm6]	G	A	5.029e^-4	0.986	UPSTREAM Sr-CII INTERGENIC
3R	18420153	3R_18420153_SNP [dm3] 3R_22594431_SNP [dm6]	G	T	5.038e^-4	0.986	INTRON Efa6
3L	20372959	3L_20372959_SNP [dm3] 3L_20379859_SNP [dm6]	C	T	5.041e^-4	0.986	INTRON RhoBTB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19449581	3R_19449581_SNP [dm3] 3R_23623859_SNP [dm6]	C	T	5.059e^-4	0.986	INTRON CG31145
X	5709686	X_5709686_SNP [dm3] X_5815653_SNP [dm6]	G	C	5.066e^-4	0.986	SYNONYMOUS_CODING CG15766	TF binding site mE1_TFBS_chinmo
3R	15282917	3R_15282917_SNP [dm3] 3R_19457195_SNP [dm6]	C	A	5.070e^-4	0.986	SYNONYMOUS_CODING CG31221
2L	6510543	2L_6510543_SNP [dm3] 2L_6510543_SNP [dm6]	C	T	5.072e^-4	0.986	INTRON CG31637
2L	13568553	2L_13568553_SNP [dm3] 2L_13568553_SNP [dm6]	T	A	5.072e^-4	0.986	INTRON kuz
2L	5907001	2L_5907001_SNP [dm3] 2L_5907001_SNP [dm6]	T	A	5.073e^-4	0.986	UPSTREAM bchs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	8105341	2R_8105341_SNP [dm3] 2R_12217836_SNP [dm6]	G	C	5.074e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9968968	2L_9968968_SNP [dm3] 2L_9968968_SNP [dm6]	T	C	5.080e^-4	0.986	DOWNSTREAM RpL13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	20672391	3L_20672391_SNP [dm3] 3L_20679291_SNP [dm6]	G	C	5.085e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12849446	2L_12849446_SNP [dm3] 2L_12849446_SNP [dm6]	G	A	5.087e^-4	0.986	INTERGENIC
3R	21128897	3R_21128897_SNP [dm3] 3R_25303175_SNP [dm6]	C	T	5.088e^-4	0.986	SYNONYMOUS_CODING CG31370 UPSTREAM CG31436 DOWNSTREAM CG13659
2R	16078599	2R_16078599_SNP [dm3] 2R_20191094_SNP [dm6]	C	T	5.102e^-4	0.986	INTERGENIC
2L	9045322	2L_9045322_SNP [dm3] 2L_9045322_SNP [dm6]	A	T	5.105e^-4	0.986	INTERGENIC
2R	11899915	2R_11899915_SNP [dm3] 2R_16012410_SNP [dm6]	A	G	5.109e^-4	0.986	SYNONYMOUS_CODING CG8389 UPSTREAM CG8388	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
2L	4594633	2L_4594633_SNP [dm3] 2L_4594633_SNP [dm6]	A	G	5.110e^-4	0.986	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13169835	2R_13169835_SNP [dm3] 2R_17282330_SNP [dm6]	T	A	5.125e^-4	0.986	INTRON mbl
3L	10125260	3L_10125260_SNP [dm3] 3L_10132160_SNP [dm6]	C	A	5.125e^-4	0.986	INTRON dpr6
3R	19844863	3R_19844863_SNP [dm3] 3R_24019141_SNP [dm6]	T	A	5.132e^-4	0.986	INTRON KrT95D
3L	19215841	3L_19215841_SNP [dm3] 3L_19222741_SNP [dm6]	A	G	5.132e^-4	0.986	INTRON fz2
3L	13134156	3L_13134156_INS [dm3] 3L_13141056_INS [dm6]	CA	TCTTTC	5.136e^-4	0.986	INTERGENIC
2R	1923988	2R_1923988_SNP [dm3] 2R_6036483_SNP [dm6]	G	A	5.147e^-4	0.986	UPSTREAM SCAP DOWNSTREAM CG14591 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	11904567	2R_11904567_SNP [dm3] 2R_16017062_SNP [dm6]	G	T	5.150e^-4	0.986	NON_SYNONYMOUS_CODING CG8397 UPSTREAM CG8399
3L	12429601	3L_12429601_SNP [dm3] 3L_12436501_SNP [dm6]	A	T	5.161e^-4	0.986	INTERGENIC
3L	12429602	3L_12429602_SNP [dm3] 3L_12436502_SNP [dm6]	T	A	5.161e^-4	0.986	INTERGENIC
2L	1371407	2L_1371407_SNP [dm3] 2L_1371407_SNP [dm6]	T	G	5.173e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_Med
2L	15140447	2L_15140447_SNP [dm3] 2L_15140447_SNP [dm6]	G	C	5.179e^-4	0.986	INTERGENIC
2R	15314260	2R_15314260_SNP [dm3] 2R_19426755_SNP [dm6]	T	C	5.179e^-4	0.986	SYNONYMOUS_CODING CalpA
2L	1371370	2L_1371370_SNP [dm3] 2L_1371370_SNP [dm6]	G	T	5.187e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_Med
2R	8619581	2R_8619581_SNP [dm3] 2R_12732076_SNP [dm6]	G	T	5.187e^-4	0.986	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26123785	3R_26123785_SNP [dm3] 3R_30298063_SNP [dm6]	G	A	5.192e^-4	0.986	INTRON hdc
X	1678322	X_1678322_SNP [dm3] X_1784289_SNP [dm6]	C	A	5.198e^-4	0.986	UTR_3_PRIME Adar DOWNSTREAM Adar INTRON CG42666
2L	1556513	2L_1556513_DEL [dm3] 2L_1556513_DEL [dm6]	TTT	A	5.227e^-4	0.986	UTR_5_PRIME haf INTRON haf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11899912	2R_11899912_SNP [dm3] 2R_16012407_SNP [dm6]	C	T	5.231e^-4	0.986	SYNONYMOUS_CODING CG8389 UPSTREAM CG8388	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
X	12897158	X_12897158_DEL [dm3] X_13003125_DEL [dm6]	ACG	A	5.235e^-4	0.986	DOWNSTREAM CG15719 INTRON rad
3R	9147403	3R_9147403_SNP [dm3] 3R_13321681_SNP [dm6]	G	A	5.238e^-4	0.986	INTERGENIC
2L	21113191	2L_21113191_SNP [dm3] 2L_21113191_SNP [dm6]	C	T	5.238e^-4	0.986	INTRON Nhe2
X	18110266	X_18110266_DEL [dm3] X_18216233_DEL [dm6]	TTT	T	5.248e^-4	0.986	INTRON CG33639
2L	19075382	2L_19075382_DEL [dm3] 2L_19075382_DEL [dm6]	GGTT	C	5.248e^-4	0.986	EXON CR33315	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1447921	X_1447921_SNP [dm3] X_1553888_SNP [dm6]	G	A	5.250e^-4	0.986	NON_SYNONYMOUS_CODING Mur2B INTRON Mur2B	TF binding site mE1_TFBS_chinmo
X	13636152	X_13636152_SNP [dm3] X_13742119_SNP [dm6]	A	G	5.256e^-4	0.986	SYNONYMOUS_CODING Grip91 DOWNSTREAM CG11151
X	14083926	X_14083926_SNP [dm3] X_14189893_SNP [dm6]	T	C	5.257e^-4	0.986	SYNONYMOUS_CODING CG11585	TF binding site mE1_TFBS_chinmo
2L	8820212	2L_8820212_SNP [dm3] 2L_8820212_SNP [dm6]	A	C	5.284e^-4	0.986	INTERGENIC
2L	19249707	2L_19249707_SNP [dm3] 2L_19249707_SNP [dm6]	G	A	5.286e^-4	0.986	INTERGENIC
3R	26569100	3R_26569100_SNP [dm3] 3R_30743378_SNP [dm6]	T	C	5.301e^-4	0.986	SYNONYMOUS_CODING CG15543	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17098770	3R_17098770_SNP [dm3] 3R_21273048_SNP [dm6]	T	A	5.303e^-4	0.986	INTRON CG3308	TF binding site BDTNP1_TFBS_dl
2L	5235939	2L_5235939_DEL [dm3] 2L_5235939_DEL [dm6]	TCATTAACAC	T	5.306e^-4	0.986	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8084634	2R_8084634_SNP [dm3] 2R_12197129_SNP [dm6]	A	C	5.319e^-4	0.986	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
3R	21961546	3R_21961546_SNP [dm3] 3R_26135824_SNP [dm6]	C	G	5.321e^-4	0.986	NON_SYNONYMOUS_CODING CG6142	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens

By genomic position
Variant impact
Gene name

LD50_Azinphos_Methyl phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results