DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.511e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2043 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	7806766	3R_7806766_SNP [dm3] 3R_11981044_SNP [dm6]	G	A	1.109e^-6	0.805	SYNONYMOUS_CODING CG12224 UPSTREAM CG18547	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
3R	22549408	3R_22549408_SNP [dm3] 3R_26723686_SNP [dm6]	G	T	1.500e^-6	0.805	INTRON CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22882499	3R_22882499_SNP [dm3] 3R_27056777_SNP [dm6]	G	A	1.761e^-6	0.805	SPLICE_SITE_REGION RYa-R INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7528497	2R_7528497_SNP [dm3] 2R_11640992_SNP [dm6]	C	T	2.517e^-6	0.805	UPSTREAM CG9005 DOWNSTREAM CG9003 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4510450	3L_4510450_SNP [dm3] 3L_4510450_SNP [dm6]	T	C	2.847e^-6	0.805	DOWNSTREAM Tie INTERGENIC
3R	22882498	3R_22882498_SNP [dm3] 3R_27056776_SNP [dm6]	G	A	2.892e^-6	0.805	SPLICE_SITE_REGION RYa-R INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18722165	2L_18722165_SNP [dm3] 2L_18722165_SNP [dm6]	C	T	4.309e^-6	0.805	INTRON CG10348
3R	22882230	3R_22882230_SNP [dm3] 3R_27056508_SNP [dm6]	T	C	4.566e^-6	0.805	INTRON RYa-R	TF binding site mE1_TFBS_inv
2L	1844748	2L_1844748_SNP [dm3] 2L_1844748_SNP [dm6]	A	C	4.698e^-6	0.805	INTRON wry
2L	8737357	2L_8737357_SNP [dm3] 2L_8737357_SNP [dm6]	A	T	5.329e^-6	0.805	INTRON raw
3R	22549137	3R_22549137_SNP [dm3] 3R_26723415_SNP [dm6]	A	T	5.441e^-6	0.805	INTRON CG6420
3L	16235775	3L_16235775_SNP [dm3] 3L_16242675_SNP [dm6]	A	G	5.561e^-6	0.805	INTERGENIC
X	19259130	X_19259130_SNP [dm3] X_19365097_SNP [dm6]	A	G	5.582e^-6	0.805	INTRON kek5
2L	18722005	2L_18722005_SNP [dm3] 2L_18722005_SNP [dm6]	T	G	7.162e^-6	0.816	INTRON CG10348
3R	13196662	3R_13196662_SNP [dm3] 3R_17370940_SNP [dm6]	C	A	7.217e^-6	0.816	DOWNSTREAM CR44256 INTERGENIC
2L	6958889	2L_6958889_SNP [dm3] 2L_6958889_SNP [dm6]	T	C	7.980e^-6	0.816	SYNONYMOUS_CODING CG3430 DOWNSTREAM Atac1
X	19259131	X_19259131_SNP [dm3] X_19365098_SNP [dm6]	C	T	8.303e^-6	0.816	INTRON kek5
X	13199667	X_13199667_SNP [dm3] X_13305634_SNP [dm6]	G	A	8.967e^-6	0.816	UTR_5_PRIME IP3K2 INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_cad
3R	16799089	3R_16799089_SNP [dm3] 3R_20973367_SNP [dm6]	C	G	9.160e^-6	0.816	INTRON Atpalpha
3L	17911017	3L_17911017_SNP [dm3] 3L_17917917_SNP [dm6]	C	T	9.671e^-6	0.816	INTERGENIC
3R	22548961	3R_22548961_DEL [dm3] 3R_26723239_DEL [dm6]	TG	T	1.038e^-5	0.816	INTRON CG6420
3L	4510169	3L_4510169_SNP [dm3] 3L_4510169_SNP [dm6]	A	T	1.077e^-5	0.816	DOWNSTREAM Tie INTERGENIC
3R	16616922	3R_16616922_SNP [dm3] 3R_20791200_SNP [dm6]	C	T	1.151e^-5	0.816	INTRON Syp
3R	22549045	3R_22549045_SNP [dm3] 3R_26723323_SNP [dm6]	G	A	1.179e^-5	0.816	INTRON CG6420
2R	15525692	2R_15525692_SNP [dm3] 2R_19638187_SNP [dm6]	T	C	1.185e^-5	0.816	DOWNSTREAM CG18367 & 2 others INTERGENIC
2L	18761721	2L_18761721_DEL [dm3] 2L_18761721_DEL [dm6]	CAAAATGA	C	1.332e^-5	0.816	INTERGENIC
3R	22549199	3R_22549199_SNP [dm3] 3R_26723477_SNP [dm6]	A	T	1.338e^-5	0.816	INTRON CG6420
3L	16235807	3L_16235807_INS [dm3] 3L_16242707_INS [dm6]	A	GCTGTCGC	1.420e^-5	0.816	INTERGENIC
2R	16512063	2R_16512063_SNP [dm3] 2R_20624558_SNP [dm6]	A	G	1.448e^-5	0.816	NON_SYNONYMOUS_CODING CG16742	TF binding site mE1_TFBS_sens
2L	18718835	2L_18718835_SNP [dm3] 2L_18718835_SNP [dm6]	C	A	1.456e^-5	0.816	INTRON CG10348
2R	11416864	2R_11416864_SNP [dm3] 2R_15529359_SNP [dm6]	A	T	1.507e^-5	0.816	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18716591	2L_18716591_SNP [dm3] 2L_18716591_SNP [dm6]	C	T	1.517e^-5	0.816	UTR_5_PRIME CG10348	TF binding site mE1_TFBS_cad
2R	4192850	2R_4192850_SNP [dm3] 2R_8305345_SNP [dm6]	T	G	1.520e^-5	0.816	DOWNSTREAM CR44447 INTERGENIC
3R	26611553	3R_26611553_SNP [dm3] 3R_30785831_SNP [dm6]	C	T	1.594e^-5	0.816	NON_SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	8737415	2L_8737415_SNP [dm3] 2L_8737415_SNP [dm6]	G	A	1.658e^-5	0.816	INTRON raw
2L	18716916	2L_18716916_DEL [dm3] 2L_18716916_DEL [dm6]	GG	G	1.660e^-5	0.816	INTRON CG10348
3R	9631414	3R_9631414_SNP [dm3] 3R_13805692_SNP [dm6]	G	T	1.661e^-5	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22548932	3R_22548932_SNP [dm3] 3R_26723210_SNP [dm6]	C	A	1.679e^-5	0.816	INTRON CG6420
3L	3521221	3L_3521221_SNP [dm3] 3L_3521221_SNP [dm6]	C	G	1.790e^-5	0.816	INTRON Eip63E
3L	17911036	3L_17911036_SNP [dm3] 3L_17917936_SNP [dm6]	G	A	1.841e^-5	0.816	INTERGENIC
2L	18760825	2L_18760825_SNP [dm3] 2L_18760825_SNP [dm6]	C	T	1.846e^-5	0.816	INTERGENIC
3L	8574359	3L_8574359_SNP [dm3] 3L_8581259_SNP [dm6]	C	T	2.088e^-5	0.816	INTRON CG43078
3R	25810464	3R_25810464_SNP [dm3] 3R_29984742_SNP [dm6]	T	C	2.097e^-5	0.816	INTRON CG7896
2L	5906941	2L_5906941_SNP [dm3] 2L_5906941_SNP [dm6]	A	T	2.122e^-5	0.816	UPSTREAM bchs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8574361	3L_8574361_SNP [dm3] 3L_8581261_SNP [dm6]	C	T	2.158e^-5	0.816	INTRON CG43078
2L	20943731	2L_20943731_SNP [dm3] 2L_20943731_SNP [dm6]	T	A	2.179e^-5	0.816	INTERGENIC
3L	17911035	3L_17911035_SNP [dm3] 3L_17917935_SNP [dm6]	G	A	2.194e^-5	0.816	INTERGENIC
3R	19358394	3R_19358394_SNP [dm3] 3R_23532672_SNP [dm6]	A	T	2.239e^-5	0.816	DOWNSTREAM CG10170 INTERGENIC
2L	1783680	2L_1783680_SNP [dm3] 2L_1783680_SNP [dm6]	A	C	2.253e^-5	0.816	UPSTREAM Gr22e INTERGENIC	regulatory region REDfly_CRMs
3R	25163603	3R_25163603_SNP [dm3] 3R_29337881_SNP [dm6]	A	G	2.258e^-5	0.816	INTERGENIC
2L	15342125	2L_15342125_SNP [dm3] 2L_15342125_SNP [dm6]	G	T	2.266e^-5	0.816	INTERGENIC
3L	17911038	3L_17911038_SNP [dm3] 3L_17917938_SNP [dm6]	A	C	2.289e^-5	0.816	INTERGENIC
3L	4510654	3L_4510654_SNP [dm3] 3L_4510654_SNP [dm6]	T	A	2.307e^-5	0.816	DOWNSTREAM Tie INTERGENIC
X	4750219	X_4750219_DEL [dm3] X_4856186_DEL [dm6]	TGGGGCTGGCTGGCTGGTTG...	T	2.378e^-5	0.826	INTRON CG42594
2L	19120026	2L_19120026_SNP [dm3] 2L_19120026_SNP [dm6]	C	A	2.439e^-5	0.832	UTR_5_PRIME Ddc INTRON Ddc	regulatory region REDfly_CRMs
2R	15171691	2R_15171691_SNP [dm3] 2R_19284186_SNP [dm6]	T	G	2.493e^-5	0.835	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2L	1844384	2L_1844384_SNP [dm3] 2L_1844384_SNP [dm6]	A	C	2.571e^-5	0.836	SYNONYMOUS_CODING wry	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17911039	3L_17911039_SNP [dm3] 3L_17917939_SNP [dm6]	T	C	2.586e^-5	0.836	INTERGENIC
2L	5906976	2L_5906976_SNP [dm3] 2L_5906976_SNP [dm6]	C	T	2.679e^-5	0.852	UPSTREAM bchs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8598288	3L_8598288_SNP [dm3] 3L_8605188_SNP [dm6]	A	G	2.769e^-5	0.855	INTRON CG6282	TF binding site BDTNP1_TFBS_dl
2L	9776217	2L_9776217_SNP [dm3] 2L_9776217_SNP [dm6]	C	T	2.782e^-5	0.855	INTERGENIC
2R	15525732	2R_15525732_SNP [dm3] 2R_19638227_SNP [dm6]	C	T	2.837e^-5	0.858	DOWNSTREAM CG18367 & 2 others INTERGENIC
3R	7160937	3R_7160937_SNP [dm3] 3R_11335215_SNP [dm6]	G	T	2.960e^-5	0.863	UTR_5_PRIME pros INTRON pros
2R	15525709	2R_15525709_SNP [dm3] 2R_19638204_SNP [dm6]	T	C	3.049e^-5	0.863	DOWNSTREAM CG18367 & 2 others INTERGENIC
2L	8507662	2L_8507662_SNP [dm3] 2L_8507662_SNP [dm6]	A	T	3.049e^-5	0.863	UPSTREAM Dh31 INTERGENIC
X	5593237	X_5593237_INS [dm3] X_5699204_INS [dm6]	T	TGTAT	3.081e^-5	0.863	UTR_5_PRIME CG4096 INTRON CG4096	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	12268816	3R_12268816_SNP [dm3] 3R_16443094_SNP [dm6]	A	G	3.110e^-5	0.863	UPSTREAM CG14882 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	3395070	3L_3395070_DEL [dm3] 3L_3395070_DEL [dm6]	TTTCT	T	3.161e^-5	0.863	DOWNSTREAM CR45737 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	7537717	2R_7537717_SNP [dm3] 2R_11650212_SNP [dm6]	T	A	3.246e^-5	0.863	INTRON CG9003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	3397412	3L_3397412_SNP [dm3] 3L_3397412_SNP [dm6]	A	T	3.461e^-5	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	3197577	3L_3197577_SNP [dm3] 3L_3197577_SNP [dm6]	A	G	3.539e^-5	0.863	START_GAINED CG14966 UTR_5_PRIME CG14966 DOWNSTREAM CG32276 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18731200	2L_18731200_SNP [dm3] 2L_18731200_SNP [dm6]	G	T	3.561e^-5	0.863	UTR_5_PRIME CG10348
2L	15342117	2L_15342117_SNP [dm3] 2L_15342117_SNP [dm6]	A	G	3.587e^-5	0.863	INTERGENIC
X	20431379	X_20431379_SNP [dm3] X_20560352_SNP [dm6]	A	C	3.601e^-5	0.863	INTRON RunxB
2L	1844376	2L_1844376_SNP [dm3] 2L_1844376_SNP [dm6]	G	A	3.615e^-5	0.863	NON_SYNONYMOUS_CODING wry	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22814753	3R_22814753_SNP [dm3] 3R_26989031_SNP [dm6]	A	T	3.633e^-5	0.863	UPSTREAM CG31075 DOWNSTREAM CG31076 INTERGENIC
3L	8574346	3L_8574346_SNP [dm3] 3L_8581246_SNP [dm6]	A	G	3.720e^-5	0.863	INTRON CG43078
3R	18825230	3R_18825230_DEL [dm3] 3R_22999508_DEL [dm6]	GATGATGATGACT...	G	3.730e^-5	0.863	UPSTREAM Nha2 DOWNSTREAM CG34375 INTERGENIC
2L	5826686	2L_5826686_SNP [dm3] 2L_5826686_SNP [dm6]	T	G	3.731e^-5	0.863	INTRON TrissinR
3R	16799706	3R_16799706_SNP [dm3] 3R_20973984_SNP [dm6]	G	A	3.870e^-5	0.863	UTR_3_PRIME Atpalpha
2R	15525812	2R_15525812_SNP [dm3] 2R_19638307_SNP [dm6]	G	A	3.895e^-5	0.863	DOWNSTREAM CG18367 & 2 others INTERGENIC
X	17940298	X_17940298_DEL [dm3] X_18046265_DEL [dm6]	AT	A	3.977e^-5	0.863	INTRON Sh & 1 other	TF binding site mE1_TFBS_chinmo
2L	6187849	2L_6187849_SNP [dm3] 2L_6187849_SNP [dm6]	C	A	4.037e^-5	0.863	INTRON CG34380	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19098023	2L_19098023_SNP [dm3] 2L_19098023_SNP [dm6]	A	T	4.042e^-5	0.863	INTRON Lim3	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	19099542	2L_19099542_SNP [dm3] 2L_19099542_SNP [dm6]	C	T	4.088e^-5	0.863	INTRON Lim3
3R	12260571	3R_12260571_SNP [dm3] 3R_16434849_SNP [dm6]	T	C	4.174e^-5	0.863	UPSTREAM CG14881 DOWNSTREAM CG17565 INTERGENIC
3R	18824405	3R_18824405_SNP [dm3] 3R_22998683_SNP [dm6]	T	A	4.221e^-5	0.863	UPSTREAM Nha2 DOWNSTREAM CR43454 INTERGENIC
3L	7905741	3L_7905741_SNP [dm3] 3L_7912641_SNP [dm6]	T	C	4.227e^-5	0.863	NON_SYNONYMOUS_CODING CG8281 UPSTREAM pbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1843778	2L_1843778_SNP [dm3] 2L_1843778_SNP [dm6]	T	C	4.261e^-5	0.863	SYNONYMOUS_CODING wry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2493902	X_2493902_SNP [dm3] X_2599869_SNP [dm6]	G	T	4.289e^-5	0.863	NON_SYNONYMOUS_CODING Klp3A DOWNSTREAM egh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19835961	3R_19835961_SNP [dm3] 3R_24010239_SNP [dm6]	G	A	4.337e^-5	0.863	INTRON KrT95D
3R	19836085	3R_19836085_DEL [dm3] 3R_24010363_DEL [dm6]	TTGTTAAACAAT...	T	4.337e^-5	0.863	INTRON KrT95D
3R	22882264	3R_22882264_SNP [dm3] 3R_27056542_SNP [dm6]	T	C	4.340e^-5	0.863	INTRON RYa-R	TF binding site mE1_TFBS_inv
2L	6762979	2L_6762979_DEL [dm3] 2L_6762979_DEL [dm6]	TTGCAGGGTTCGGCAA...	T	4.380e^-5	0.863	CODON_DELETION CG11321	TF binding site mE1_TFBS_sens
3R	19835957	3R_19835957_SNP [dm3] 3R_24010235_SNP [dm6]	G	C	4.463e^-5	0.863	INTRON KrT95D
3R	26611380	3R_26611380_SNP [dm3] 3R_30785658_SNP [dm6]	C	T	4.563e^-5	0.863	SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18722792	2L_18722792_INS [dm3] 2L_18722792_INS [dm6]	T	TGT	4.716e^-5	0.863	INTRON CG10348
3L	4509894	3L_4509894_SNP [dm3] 3L_4509894_SNP [dm6]	T	G	4.845e^-5	0.863	DOWNSTREAM Tie INTERGENIC
2L	19138987	2L_19138987_SNP [dm3] 2L_19138987_SNP [dm6]	G	A	4.878e^-5	0.863	INTRON brat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3R	22814903	3R_22814903_SNP [dm3] 3R_26989181_SNP [dm6]	G	A	4.930e^-5	0.863	UPSTREAM CG31075 INTRON CG31076
3R	22814880	3R_22814880_SNP [dm3] 3R_26989158_SNP [dm6]	A	G	4.960e^-5	0.863	SYNONYMOUS_CODING CG31076 UPSTREAM CG31075
3R	18747282	3R_18747282_SNP [dm3] 3R_22921560_SNP [dm6]	A	G	5.033e^-5	0.863	INTRON klg
3R	24968212	3R_24968212_SNP [dm3] 3R_29142490_SNP [dm6]	A	G	5.100e^-5	0.863	SYNONYMOUS_CODING CG14516	TF binding site mE1_TFBS_chinmo
3R	19836103	3R_19836103_SNP [dm3] 3R_24010381_SNP [dm6]	C	A	5.138e^-5	0.863	INTRON KrT95D
3R	19836116	3R_19836116_SNP [dm3] 3R_24010394_SNP [dm6]	A	T	5.169e^-5	0.863	INTRON KrT95D
3R	24970761	3R_24970761_SNP [dm3] 3R_29145039_SNP [dm6]	T	C	5.186e^-5	0.863	SYNONYMOUS_CODING CG14516 DOWNSTREAM CG14511
3L	687625	3L_687625_SNP [dm3] 3L_687625_SNP [dm6]	T	C	5.312e^-5	0.863	DOWNSTREAM CG32483 INTRON CG3344
2L	18772952	2L_18772952_SNP [dm3] 2L_18772952_SNP [dm6]	C	G	5.340e^-5	0.863	DOWNSTREAM CR43804 INTRON ham
3L	14471553	3L_14471553_SNP [dm3] 3L_14478453_SNP [dm6]	C	A	5.425e^-5	0.863	INTRON bbg
3R	19357082	3R_19357082_SNP [dm3] 3R_23531360_SNP [dm6]	G	A	5.445e^-5	0.863	UPSTREAM CG10175 INTERGENIC
3L	4510693	3L_4510693_SNP [dm3] 3L_4510693_SNP [dm6]	A	C	5.585e^-5	0.863	DOWNSTREAM Tie INTERGENIC
2L	6869510	2L_6869510_SNP [dm3] 2L_6869510_SNP [dm6]	T	C	5.587e^-5	0.863	INTRON Nha1
3R	19915167	3R_19915167_INS [dm3] 3R_24089445_INS [dm6]	G	GA	5.709e^-5	0.863	INTRON 4EHP
3R	26724706	3R_26724706_SNP [dm3] 3R_30898984_SNP [dm6]	C	T	5.709e^-5	0.863	INTRON Cyp4c3
2L	4684706	2L_4684706_SNP [dm3] 2L_4684706_SNP [dm6]	G	A	5.733e^-5	0.863	NON_SYNONYMOUS_CODING CG11929 UPSTREAM Bsg25A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19259182	X_19259182_SNP [dm3] X_19365149_SNP [dm6]	G	A	5.736e^-5	0.863	INTRON kek5
X	6727165	X_6727165_SNP [dm3] X_6833132_SNP [dm6]	G	A	5.752e^-5	0.863	UPSTREAM CG12796 INTRON nonC
3R	19837528	3R_19837528_SNP [dm3] 3R_24011806_SNP [dm6]	A	G	5.786e^-5	0.863	INTRON KrT95D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1843820	2L_1843820_SNP [dm3] 2L_1843820_SNP [dm6]	G	A	5.815e^-5	0.863	SYNONYMOUS_CODING wry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15525634	2R_15525634_SNP [dm3] 2R_19638129_SNP [dm6]	C	T	5.834e^-5	0.863	DOWNSTREAM CG18367 & 2 others INTERGENIC
X	602144	X_602144_SNP [dm3] X_708111_SNP [dm6]	C	G	5.856e^-5	0.863	INTRON sdk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6611223	X_6611223_SNP [dm3] X_6717190_SNP [dm6]	T	C	5.863e^-5	0.863	UTR_3_PRIME CG14441
3L	8574372	3L_8574372_SNP [dm3] 3L_8581272_SNP [dm6]	C	T	5.913e^-5	0.863	INTRON CG43078
2L	1783683	2L_1783683_SNP [dm3] 2L_1783683_SNP [dm6]	G	T	5.914e^-5	0.863	UPSTREAM Gr22e INTERGENIC	regulatory region REDfly_CRMs
3R	19836069	3R_19836069_SNP [dm3] 3R_24010347_SNP [dm6]	T	A	5.952e^-5	0.863	INTRON KrT95D
X	6338433	X_6338433_SNP [dm3] X_6444400_SNP [dm6]	G	T	5.962e^-5	0.863	INTRON CG42340
2L	1723101	2L_1723101_SNP [dm3] 2L_1723101_SNP [dm6]	T	C	6.048e^-5	0.863	INTRON Rim2
2L	6870030	2L_6870030_SNP [dm3] 2L_6870030_SNP [dm6]	A	G	6.213e^-5	0.863	INTRON Nha1
3R	12954893	3R_12954893_SNP [dm3] 3R_17129171_SNP [dm6]	C	A	6.233e^-5	0.863	DOWNSTREAM CG31269 & 2 others INTERGENIC
2L	19180220	2L_19180220_SNP [dm3] 2L_19180220_SNP [dm6]	A	G	6.311e^-5	0.863	SYNONYMOUS_CODING CG17568 DOWNSTREAM brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13159107	2R_13159107_INS [dm3] 2R_17271602_INS [dm6]	T	TT	6.394e^-5	0.863	INTRON mbl
3R	22542298	3R_22542298_SNP [dm3] 3R_26716576_SNP [dm6]	G	A	6.397e^-5	0.863	SYNONYMOUS_CODING CG6425	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22544991	3R_22544991_SNP [dm3] 3R_26719269_SNP [dm6]	A	T	6.397e^-5	0.863	SYNONYMOUS_CODING CG5484 DOWNSTREAM CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22545003	3R_22545003_SNP [dm3] 3R_26719281_SNP [dm6]	T	C	6.397e^-5	0.863	SYNONYMOUS_CODING CG5484 DOWNSTREAM CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22545012	3R_22545012_SNP [dm3] 3R_26719290_SNP [dm6]	C	T	6.397e^-5	0.863	SYNONYMOUS_CODING CG5484 DOWNSTREAM CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22545021	3R_22545021_SNP [dm3] 3R_26719299_SNP [dm6]	T	C	6.397e^-5	0.863	SYNONYMOUS_CODING CG5484 DOWNSTREAM CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22545050	3R_22545050_SNP [dm3] 3R_26719328_SNP [dm6]	A	T	6.397e^-5	0.863	DOWNSTREAM CG6420 INTRON CG5484	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22545064	3R_22545064_SNP [dm3] 3R_26719342_SNP [dm6]	A	T	6.397e^-5	0.863	DOWNSTREAM CG6420 INTRON CG5484	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22882470	3R_22882470_SNP [dm3] 3R_27056748_SNP [dm6]	T	C	6.703e^-5	0.863	SYNONYMOUS_CODING RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	1496137	2R_1496137_SNP [dm3] 2R_5608632_SNP [dm6]	A	T	6.831e^-5	0.863	UPSTREAM CG17508 INTERGENIC
2L	18866154	2L_18866154_SNP [dm3] 2L_18866154_SNP [dm6]	A	C	6.837e^-5	0.863	DOWNSTREAM mir-4946 INTRON tup	TF binding site BDTNP1_TFBS_dl
3L	14364339	3L_14364339_SNP [dm3] 3L_14371239_SNP [dm6]	T	G	6.891e^-5	0.863	INTERGENIC
3L	15531138	3L_15531138_SNP [dm3] 3L_15538038_SNP [dm6]	C	G	6.986e^-5	0.863	INTRON CrebA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19091363	2L_19091363_SNP [dm3] 2L_19091363_SNP [dm6]	G	A	7.036e^-5	0.863	INTRON Lim3
2R	9056047	2R_9056047_SNP [dm3] 2R_13168542_SNP [dm6]	A	C	7.043e^-5	0.863	UTR_5_PRIME Spt-I UPSTREAM Spt-I & 1 other EXON CR45142	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	22089907	3R_22089907_SNP [dm3] 3R_26264185_SNP [dm6]	C	T	7.084e^-5	0.863	INTRON CG6154
3R	19836214	3R_19836214_SNP [dm3] 3R_24010492_SNP [dm6]	C	T	7.174e^-5	0.863	INTRON KrT95D
3L	15033545	3L_15033545_SNP [dm3] 3L_15040445_SNP [dm6]	C	T	7.184e^-5	0.863	INTRON Sytbeta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12464013	3R_12464013_SNP [dm3] 3R_16638291_SNP [dm6]	C	T	7.227e^-5	0.863	UTR_3_PRIME Fas1 DOWNSTREAM Fas1 INTRON Fas1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7089275	3R_7089275_DEL [dm3] 3R_11263553_DEL [dm6]	GCCCCGCACCATGATTTCAG...	G	7.234e^-5	0.863	INTERGENIC
3L	15132002	3L_15132002_SNP [dm3] 3L_15138902_SNP [dm6]	G	A	7.241e^-5	0.863	SYNONYMOUS_CODING Pdi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12698422	2L_12698422_SNP [dm3] 2L_12698422_SNP [dm6]	T	C	7.346e^-5	0.863	SYNONYMOUS_CODING PICK1 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7528403	2R_7528403_SNP [dm3] 2R_11640898_SNP [dm6]	C	G	7.352e^-5	0.863	UTR_5_PRIME CG9005 DOWNSTREAM CG9003	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9136300	2L_9136300_SNP [dm3] 2L_9136300_SNP [dm6]	A	T	7.361e^-5	0.863	INTRON CG32982
2R	16701812	2R_16701812_SNP [dm3] 2R_20814307_SNP [dm6]	G	T	7.400e^-5	0.863	INTERGENIC
3R	7740319	3R_7740319_SNP [dm3] 3R_11914597_SNP [dm6]	T	C	7.437e^-5	0.863	INTRON Cad87A
2L	5087615	2L_5087615_SNP [dm3] 2L_5087615_SNP [dm6]	C	G	7.461e^-5	0.863	INTRON pgant5
X	2491479	X_2491479_SNP [dm3] X_2597446_SNP [dm6]	A	G	7.462e^-5	0.863	SYNONYMOUS_CODING egh
2R	12638377	2R_12638377_SNP [dm3] 2R_16750872_SNP [dm6]	T	C	7.515e^-5	0.863	SYNONYMOUS_CODING Acp53C14c UPSTREAM Acp53Ea DOWNSTREAM unc-104
2L	3432501	2L_3432501_SNP [dm3] 2L_3432501_SNP [dm6]	G	A	7.536e^-5	0.863	INTERGENIC
3L	4102930	3L_4102930_SNP [dm3] 3L_4102930_SNP [dm6]	A	G	7.571e^-5	0.863	UTR_5_PRIME CG14995 UPSTREAM CG14995 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	19360842	3R_19360842_SNP [dm3] 3R_23535120_SNP [dm6]	T	A	7.573e^-5	0.863	NON_SYNONYMOUS_CODING CG16732 UPSTREAM CG10170
3L	10799159	3L_10799159_SNP [dm3] 3L_10806059_SNP [dm6]	T	G	7.621e^-5	0.863	UPSTREAM CR44347 INTERGENIC
2R	10631248	2R_10631248_SNP [dm3] 2R_14743743_SNP [dm6]	A	G	7.678e^-5	0.863	INTRON CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15090924	3L_15090924_SNP [dm3] 3L_15097824_SNP [dm6]	T	A	7.749e^-5	0.863	UPSTREAM CTPsyn DOWNSTREAM CR43973 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	12493888	3R_12493888_SNP [dm3] 3R_16668166_SNP [dm6]	T	G	7.751e^-5	0.863	INTRON Ubx	TF binding site mE1_TFBS_HSA
3L	3197547	3L_3197547_SNP [dm3] 3L_3197547_SNP [dm6]	T	A	7.791e^-5	0.863	UTR_5_PRIME CG14966 DOWNSTREAM CG32276 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
X	17171422	X_17171422_SNP [dm3] X_17277389_SNP [dm6]	A	G	7.856e^-5	0.863	INTRON f
3R	7089271	3R_7089271_DEL [dm3] 3R_11263549_DEL [dm6]	CT	C	7.877e^-5	0.863	INTERGENIC
3L	8407365	3L_8407365_SNP [dm3] 3L_8414265_SNP [dm6]	C	T	7.922e^-5	0.863	SYNONYMOUS_CODING Exo70 DOWNSTREAM mtrm
2L	5906981	2L_5906981_SNP [dm3] 2L_5906981_SNP [dm6]	T	A	8.022e^-5	0.863	UPSTREAM bchs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	17910673	3L_17910673_INS [dm3] 3L_17917573_INS [dm6]	C	AAGTA	8.080e^-5	0.863	INTERGENIC
2L	1845643	2L_1845643_SNP [dm3] 2L_1845643_SNP [dm6]	G	A	8.100e^-5	0.863	INTRON wry
3L	8598906	3L_8598906_SNP [dm3] 3L_8605806_SNP [dm6]	C	G	8.216e^-5	0.863	INTRON CG6282
3R	9710235	3R_9710235_SNP [dm3] 3R_13884513_SNP [dm6]	C	T	8.258e^-5	0.863	INTERGENIC
3R	19837529	3R_19837529_SNP [dm3] 3R_24011807_SNP [dm6]	C	T	8.317e^-5	0.863	INTRON KrT95D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	22187105	2L_22187105_SNP [dm3] 2L_22187105_SNP [dm6]	T	G	8.401e^-5	0.863	INTERGENIC
3L	8574324	3L_8574324_SNP [dm3] 3L_8581224_SNP [dm6]	A	T	8.422e^-5	0.863	INTRON CG43078
3R	24326688	3R_24326688_INS [dm3] 3R_28500966_INS [dm6]	C	CCC	8.449e^-5	0.863	INTRON Dhc98D
3L	10432389	3L_10432389_SNP [dm3] 3L_10439289_SNP [dm6]	A	G	8.517e^-5	0.863	INTERGENIC	transposable element FlyBase
2R	15171588	2R_15171588_SNP [dm3] 2R_19284083_SNP [dm6]	T	A	8.533e^-5	0.863	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
3R	22543395	3R_22543395_SNP [dm3] 3R_26717673_SNP [dm6]	T	G	8.577e^-5	0.863	UPSTREAM CG5484 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2R	15171593	2R_15171593_SNP [dm3] 2R_19284088_SNP [dm6]	A	T	8.636e^-5	0.863	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
3L	4510079	3L_4510079_SNP [dm3] 3L_4510079_SNP [dm6]	A	T	8.677e^-5	0.863	DOWNSTREAM Tie INTERGENIC
3R	22882476	3R_22882476_SNP [dm3] 3R_27056754_SNP [dm6]	G	A	8.707e^-5	0.863	SYNONYMOUS_CODING RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12381260	2R_12381260_SNP [dm3] 2R_16493755_SNP [dm6]	C	A	8.775e^-5	0.863	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	7155471	3R_7155471_SNP [dm3] 3R_11329749_SNP [dm6]	G	T	8.870e^-5	0.863	UTR_5_PRIME pros
3R	7855979	3R_7855979_SNP [dm3] 3R_12030257_SNP [dm6]	T	G	8.877e^-5	0.863	SYNONYMOUS_CODING CG31358 UTR_5_PRIME CG42505 & 1 other
2R	11417441	2R_11417441_SNP [dm3] 2R_15529936_SNP [dm6]	C	A	8.926e^-5	0.863	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19843863	2L_19843863_SNP [dm3] 2L_19843863_SNP [dm6]	G	A	8.935e^-5	0.863	INTRON sick
X	5523103	X_5523103_SNP [dm3] X_5629070_SNP [dm6]	C	T	8.973e^-5	0.863	INTRON CG42492
2L	5905524	2L_5905524_SNP [dm3] 2L_5905524_SNP [dm6]	C	T	9.071e^-5	0.863	UPSTREAM CG9021 EXON CR43808
2L	15207512	2L_15207512_SNP [dm3] 2L_15207512_SNP [dm6]	A	C	9.130e^-5	0.863	UPSTREAM CR44196 INTERGENIC
3L	3037591	3L_3037591_SNP [dm3] 3L_3037591_SNP [dm6]	C	G	9.139e^-5	0.863	UPSTREAM CG2162 INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4102950	3L_4102950_DEL [dm3] 3L_4102950_DEL [dm6]	TT	T	9.189e^-5	0.863	UTR_5_PRIME CG14995 UPSTREAM CG14995 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	17910676	3L_17910676_SNP [dm3] 3L_17917576_SNP [dm6]	T	A	9.407e^-5	0.863	INTERGENIC
2L	20573159	2L_20573159_SNP [dm3] 2L_20573159_SNP [dm6]	A	G	9.416e^-5	0.863	INTRON CR45347
2L	9775844	2L_9775844_SNP [dm3] 2L_9775844_SNP [dm6]	T	C	9.464e^-5	0.863	UPSTREAM ppk11 INTERGENIC
X	13199689	X_13199689_SNP [dm3] X_13305656_SNP [dm6]	A	G	9.545e^-5	0.863	UTR_5_PRIME IP3K2 INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_cad
3R	8569297	3R_8569297_SNP [dm3] 3R_12743575_SNP [dm6]	C	T	9.581e^-5	0.863	SYNONYMOUS_CODING CG5999
2R	12381003	2R_12381003_INS [dm3] 2R_16493498_INS [dm6]	G	CAAAA	9.595e^-5	0.863	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5781095	3L_5781095_SNP [dm3] 3L_5787995_SNP [dm6]	T	A	9.645e^-5	0.863	INTERGENIC
X	19037553	X_19037553_SNP [dm3] X_19143520_SNP [dm6]	A	C	9.694e^-5	0.863	UTR_3_PRIME RhoGAP18B
2L	8157012	2L_8157012_SNP [dm3] 2L_8157012_SNP [dm6]	G	A	9.775e^-5	0.863	UPSTREAM CG8552 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	1621185	2L_1621185_SNP [dm3] 2L_1621185_SNP [dm6]	G	C	9.800e^-5	0.863	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22545190	3R_22545190_SNP [dm3] 3R_26719468_SNP [dm6]	C	T	9.908e^-5	0.863	SYNONYMOUS_CODING CG5484 DOWNSTREAM CG6420	TF binding site mE1_TFBS_cad
2L	5906953	2L_5906953_SNP [dm3] 2L_5906953_SNP [dm6]	G	A	9.909e^-5	0.863	UPSTREAM bchs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9551715	3L_9551715_SNP [dm3] 3L_9558615_SNP [dm6]	A	G	9.938e^-5	0.863	INTRON CG42673
2R	12381221	2R_12381221_SNP [dm3] 2R_16493716_SNP [dm6]	C	T	9.946e^-5	0.863	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8598281	3L_8598281_SNP [dm3] 3L_8605181_SNP [dm6]	T	C	9.960e^-5	0.863	INTRON CG6282	TF binding site BDTNP1_TFBS_dl
X	12253510	X_12253510_DEL [dm3] X_12359477_DEL [dm6]	TCTATAATTTAT...	T	9.978e^-5	0.863	INTERGENIC
3R	18688365	3R_18688365_SNP [dm3] 3R_22862643_SNP [dm6]	C	T	9.992e^-5	0.863	INTERGENIC
2L	3430875	2L_3430875_SNP [dm3] 2L_3430875_SNP [dm6]	A	G	1.008e^-4	0.863	INTERGENIC
3L	8574354	3L_8574354_SNP [dm3] 3L_8581254_SNP [dm6]	T	A	1.019e^-4	0.863	INTRON CG43078
2R	1496115	2R_1496115_SNP [dm3] 2R_5608610_SNP [dm6]	C	T	1.020e^-4	0.863	UPSTREAM CG17508 INTERGENIC
3R	19837509	3R_19837509_SNP [dm3] 3R_24011787_SNP [dm6]	A	T	1.021e^-4	0.863	INTRON KrT95D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8574323	3L_8574323_SNP [dm3] 3L_8581223_SNP [dm6]	G	A	1.023e^-4	0.863	INTRON CG43078
3L	8598259	3L_8598259_SNP [dm3] 3L_8605159_SNP [dm6]	C	T	1.026e^-4	0.863	INTRON CG6282	TF binding site BDTNP1_TFBS_dl
2R	10672099	2R_10672099_SNP [dm3] 2R_14784594_SNP [dm6]	T	G	1.026e^-4	0.863	INTRON kn	TF binding site mE1_TFBS_inv
3R	26724619	3R_26724619_SNP [dm3] 3R_30898897_SNP [dm6]	A	G	1.028e^-4	0.863	INTRON Cyp4c3
3L	16230402	3L_16230402_SNP [dm3] 3L_16237302_SNP [dm6]	A	G	1.031e^-4	0.863	UPSTREAM l_3_72Dr DOWNSTREAM l_3_72Dp INTERGENIC
3L	4510651	3L_4510651_SNP [dm3] 3L_4510651_SNP [dm6]	A	G	1.032e^-4	0.863	DOWNSTREAM Tie INTERGENIC
3R	19174102	3R_19174102_SNP [dm3] 3R_23348380_SNP [dm6]	C	T	1.037e^-4	0.863	SYNONYMOUS_CODING DNApol-epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens
2R	9647106	2R_9647106_SNP [dm3] 2R_13759601_SNP [dm6]	C	T	1.038e^-4	0.863	DOWNSTREAM CG6280 INTERGENIC
3R	7161129	3R_7161129_DEL [dm3] 3R_11335407_DEL [dm6]	AACAAAAA	A	1.040e^-4	0.863	UTR_5_PRIME pros INTRON pros	TF binding site BDTNP1_TFBS_dl
3L	15007753	3L_15007753_SNP [dm3] 3L_15014653_SNP [dm6]	T	A	1.040e^-4	0.863	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2L	1843755	2L_1843755_SNP [dm3] 2L_1843755_SNP [dm6]	A	G	1.061e^-4	0.863	NON_SYNONYMOUS_CODING wry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1723112	2L_1723112_SNP [dm3] 2L_1723112_SNP [dm6]	A	T	1.061e^-4	0.863	INTRON Rim2
2L	15430451	2L_15430451_SNP [dm3] 2L_15430451_SNP [dm6]	G	A	1.067e^-4	0.863	INTERGENIC
3R	22089901	3R_22089901_SNP [dm3] 3R_26264179_SNP [dm6]	T	A	1.079e^-4	0.863	INTRON CG6154
2L	6763051	2L_6763051_SNP [dm3] 2L_6763051_SNP [dm6]	C	A	1.113e^-4	0.863	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	4102998	3L_4102998_SNP [dm3] 3L_4102998_SNP [dm6]	T	A	1.123e^-4	0.863	SPLICE_SITE_REGION CG14995 UTR_5_PRIME CG14995 UPSTREAM CG14995 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	5820355	2L_5820355_SNP [dm3] 2L_5820355_SNP [dm6]	C	A	1.128e^-4	0.863	INTERGENIC
2L	1754317	2L_1754317_SNP [dm3] 2L_1754317_SNP [dm6]	G	A	1.131e^-4	0.863	DOWNSTREAM Gr22f INTERGENIC
3L	4164813	3L_4164813_INS [dm3] 3L_4164813_INS [dm6]	A	AGTTGA	1.143e^-4	0.863	INTRON mas	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10808829	3L_10808829_SNP [dm3] 3L_10815729_SNP [dm6]	A	G	1.146e^-4	0.863	UTR_3_PRIME CG42831 UPSTREAM CR45247
3R	25153216	3R_25153216_INS [dm3] 3R_29327494_INS [dm6]	T	TAT	1.154e^-4	0.863	INTERGENIC
3L	4511269	3L_4511269_SNP [dm3] 3L_4511269_SNP [dm6]	A	G	1.164e^-4	0.863	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	22882334	3R_22882334_SNP [dm3] 3R_27056612_SNP [dm6]	T	A	1.165e^-4	0.863	INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10671765	2R_10671765_SNP [dm3] 2R_14784260_SNP [dm6]	T	C	1.166e^-4	0.863	INTRON kn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	22089943	3R_22089943_SNP [dm3] 3R_26264221_SNP [dm6]	A	T	1.179e^-4	0.863	INTRON CG6154
3R	22089948	3R_22089948_SNP [dm3] 3R_26264226_SNP [dm6]	C	A	1.179e^-4	0.863	INTRON CG6154
3R	22089951	3R_22089951_SNP [dm3] 3R_26264229_SNP [dm6]	G	C	1.179e^-4	0.863	INTRON CG6154
3R	18824653	3R_18824653_DEL [dm3] 3R_22998931_DEL [dm6]	GG	G	1.187e^-4	0.863	UPSTREAM Nha2 INTERGENIC
3L	10750349	3L_10750349_SNP [dm3] 3L_10757249_SNP [dm6]	C	T	1.187e^-4	0.863	INTERGENIC
3R	22882751	3R_22882751_SNP [dm3] 3R_27057029_SNP [dm6]	T	C	1.189e^-4	0.863	SYNONYMOUS_CODING RYa-R DOWNSTREAM Nep5	TF binding site mE1_TFBS_inv
2L	18735110	2L_18735110_SNP [dm3] 2L_18735110_SNP [dm6]	A	T	1.190e^-4	0.863	UPSTREAM CR44769 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	5906975	2L_5906975_SNP [dm3] 2L_5906975_SNP [dm6]	T	G	1.190e^-4	0.863	UPSTREAM bchs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	9055875	2R_9055875_SNP [dm3] 2R_13168370_SNP [dm6]	A	T	1.193e^-4	0.863	UPSTREAM Spt-I & 1 other DOWNSTREAM CR45142 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	25949180	3R_25949180_SNP [dm3] 3R_30123458_SNP [dm6]	T	A	1.193e^-4	0.863	UPSTREAM CG45072 DOWNSTREAM CG45073 INTERGENIC
3L	8574357	3L_8574357_SNP [dm3] 3L_8581257_SNP [dm6]	G	T	1.198e^-4	0.863	INTRON CG43078
2L	16213688	2L_16213688_SNP [dm3] 2L_16213688_SNP [dm6]	T	G	1.205e^-4	0.863	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4957694	2R_4957694_SNP [dm3] 2R_9070189_SNP [dm6]	T	C	1.210e^-4	0.863	INTRON ana
2R	9240476	2R_9240476_SNP [dm3] 2R_13352971_SNP [dm6]	A	G	1.212e^-4	0.863	DOWNSTREAM CG17048 INTRON CR44206
2L	9089946	2L_9089946_SNP [dm3] 2L_9089946_SNP [dm6]	A	C	1.221e^-4	0.863	DOWNSTREAM Toll-4 INTERGENIC
3R	19827699	3R_19827699_SNP [dm3] 3R_24001977_SNP [dm6]	T	C	1.226e^-4	0.863	INTRON KrT95D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	457442	X_457442_SNP [dm3] X_563409_SNP [dm6]	G	C	1.234e^-4	0.863	INTRON Appl
2L	5906960	2L_5906960_INS [dm3] 2L_5906960_INS [dm6]	A	TT	1.247e^-4	0.863	UPSTREAM bchs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	5906967	2L_5906967_SNP [dm3] 2L_5906967_SNP [dm6]	C	T	1.247e^-4	0.863	UPSTREAM bchs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	17910678	3L_17910678_SNP [dm3] 3L_17917578_SNP [dm6]	T	C	1.252e^-4	0.863	INTERGENIC
2L	18374955	2L_18374955_SNP [dm3] 2L_18374955_SNP [dm6]	G	A	1.258e^-4	0.863	INTRON Fas3
3L	10377538	3L_10377538_SNP [dm3] 3L_10384438_SNP [dm6]	C	T	1.262e^-4	0.863	INTERGENIC
X	3538400	X_3538400_SNP [dm3] X_3644367_SNP [dm6]	G	T	1.265e^-4	0.863	INTRON AstA-R1
3R	7804505	3R_7804505_SNP [dm3] 3R_11978783_SNP [dm6]	T	C	1.268e^-4	0.863	UPSTREAM CR44135 INTRON CG18547	TF binding site mE1_TFBS_cad
2R	9065287	2R_9065287_SNP [dm3] 2R_13177782_SNP [dm6]	A	T	1.270e^-4	0.863	SYNONYMOUS_CODING CG17724 UTR_3_PRIME seq & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9973666	3R_9973666_INS [dm3] 3R_14147944_INS [dm6]	G	GAC	1.275e^-4	0.863	DOWNSTREAM CG14355 INTERGENIC
3L	14574253	3L_14574253_SNP [dm3] 3L_14581153_SNP [dm6]	A	C	1.279e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4509910	3L_4509910_SNP [dm3] 3L_4509910_SNP [dm6]	A	C	1.296e^-4	0.863	DOWNSTREAM Tie INTERGENIC
3R	7742827	3R_7742827_SNP [dm3] 3R_11917105_SNP [dm6]	G	C	1.301e^-4	0.863	INTRON Cad87A
X	16366165	X_16366165_SNP [dm3] X_16472132_SNP [dm6]	A	T	1.304e^-4	0.863	INTRON para	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21691531	3R_21691531_SNP [dm3] 3R_25865809_SNP [dm6]	A	G	1.309e^-4	0.863	INTRON CG5890
3R	19899749	3R_19899749_SNP [dm3] 3R_24074027_SNP [dm6]	C	T	1.313e^-4	0.863	INTRON 4EHP
3R	22089991	3R_22089991_SNP [dm3] 3R_26264269_SNP [dm6]	A	T	1.318e^-4	0.863	INTRON CG6154
3L	8574310	3L_8574310_SNP [dm3] 3L_8581210_SNP [dm6]	C	G	1.324e^-4	0.863	INTRON CG43078
3L	9365739	3L_9365739_SNP [dm3] 3L_9372639_SNP [dm6]	T	C	1.325e^-4	0.863	UPSTREAM Hsp67Bb & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	2400488	X_2400488_SNP [dm3] X_2506455_SNP [dm6]	G	T	1.325e^-4	0.863	UPSTREAM trol INTRON trol
3L	8574315	3L_8574315_MNP [dm3] 3L_8581215_MNP [dm6]	TTT	AAG	1.329e^-4	0.863	INTRON CG43078
3R	7865038	3R_7865038_SNP [dm3] 3R_12039316_SNP [dm6]	A	G	1.331e^-4	0.863	INTERGENIC
X	561268	X_561268_SNP [dm3] X_667235_SNP [dm6]	T	A	1.332e^-4	0.863	INTERGENIC
3L	4510646	3L_4510646_SNP [dm3] 3L_4510646_SNP [dm6]	A	C	1.335e^-4	0.863	DOWNSTREAM Tie INTERGENIC
2L	18581361	2L_18581361_SNP [dm3] 2L_18581361_SNP [dm6]	A	C	1.335e^-4	0.863	INTRON Pde11
2L	11433546	2L_11433546_SNP [dm3] 2L_11433546_SNP [dm6]	T	G	1.337e^-4	0.863	DOWNSTREAM salm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	21934277	X_21934277_SNP [dm3] X_22532441_SNP [dm6]	T	C	1.342e^-4	0.863	SYNONYMOUS_CODING S6kII INTRON CG17600
2R	11359024	2R_11359024_SNP [dm3] 2R_15471519_SNP [dm6]	T	C	1.344e^-4	0.863	UTR_3_PRIME CG43729 DOWNSTREAM CG43729 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	16158248	2R_16158248_SNP [dm3] 2R_20270743_SNP [dm6]	C	T	1.354e^-4	0.863	SYNONYMOUS_CODING CG8908 DOWNSTREAM CG10444
3R	20567943	3R_20567943_SNP [dm3] 3R_24742221_SNP [dm6]	A	T	1.356e^-4	0.863	INTRON tok
3R	22882655	3R_22882655_SNP [dm3] 3R_27056933_SNP [dm6]	C	T	1.359e^-4	0.863	SYNONYMOUS_CODING RYa-R DOWNSTREAM Nep5	TF binding site mE1_TFBS_inv
3R	20795183	3R_20795183_INS [dm3] 3R_24969461_INS [dm6]	T	TGT	1.362e^-4	0.863	INTERGENIC
3R	20795184	3R_20795184_DEL [dm3] 3R_24969462_DEL [dm6]	CA	C	1.362e^-4	0.863	INTERGENIC
3R	10966350	3R_10966350_SNP [dm3] 3R_15140628_SNP [dm6]	A	G	1.366e^-4	0.863	NON_SYNONYMOUS_CODING CG3987 UPSTREAM CR45600
2L	540296	2L_540296_SNP [dm3] 2L_540296_SNP [dm6]	C	A	1.381e^-4	0.863	UTR_3_PRIME ush DOWNSTREAM lwr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA
X	2590441	X_2590441_SNP [dm3] X_2696408_SNP [dm6]	A	G	1.388e^-4	0.863	SYNONYMOUS_CODING CG2658	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18754912	2L_18754912_SNP [dm3] 2L_18754912_SNP [dm6]	G	T	1.394e^-4	0.863	INTERGENIC
2L	18696111	2L_18696111_SNP [dm3] 2L_18696111_SNP [dm6]	G	T	1.399e^-4	0.863	UTR_5_PRIME CG10338 UPSTREAM CG10383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	1600904	2R_1600904_SNP [dm3] 2R_5713399_SNP [dm6]	T	C	1.411e^-4	0.863	INTRON ap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2965782	2L_2965782_SNP [dm3] 2L_2965782_SNP [dm6]	G	A	1.412e^-4	0.863	UTR_3_PRIME Rbp9 DOWNSTREAM Rbp9
3L	10839130	3L_10839130_SNP [dm3] 3L_10846030_SNP [dm6]	C	T	1.412e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	12253494	X_12253494_SNP [dm3] X_12359461_SNP [dm6]	T	C	1.416e^-4	0.863	INTERGENIC
2L	15154174	2L_15154174_SNP [dm3] 2L_15154174_SNP [dm6]	G	A	1.418e^-4	0.863	INTERGENIC
X	10079260	X_10079260_SNP [dm3] X_10185227_SNP [dm6]	C	T	1.421e^-4	0.863	INTRON CG43902 & 1 other
3R	19915664	3R_19915664_SNP [dm3] 3R_24089942_SNP [dm6]	C	T	1.429e^-4	0.863	INTRON 4EHP
2L	18761729	2L_18761729_INS [dm3] 2L_18761729_INS [dm6]	G	GTTTG	1.431e^-4	0.863	INTERGENIC
3R	7847530	3R_7847530_SNP [dm3] 3R_12021808_SNP [dm6]	A	G	1.435e^-4	0.863	INTERGENIC
3R	7856485	3R_7856485_SNP [dm3] 3R_12030763_SNP [dm6]	A	C	1.435e^-4	0.863	INTRON CG31358 & 2 others
3R	7878994	3R_7878994_SNP [dm3] 3R_12053272_SNP [dm6]	A	T	1.435e^-4	0.863	INTERGENIC
3R	7882462	3R_7882462_SNP [dm3] 3R_12056740_SNP [dm6]	C	T	1.435e^-4	0.863	INTERGENIC
3R	21272601	3R_21272601_SNP [dm3] 3R_25446879_SNP [dm6]	T	G	1.437e^-4	0.863	INTRON Fur1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	5781109	3L_5781109_SNP [dm3] 3L_5788009_SNP [dm6]	G	A	1.441e^-4	0.863	INTERGENIC
X	10299118	X_10299118_INS [dm3] X_10405085_INS [dm6]	A	AAATGAATT	1.450e^-4	0.863	INTRON flw
X	8802866	X_8802866_SNP [dm3] X_8908833_SNP [dm6]	T	A	1.455e^-4	0.863	INTRON rdgA	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15030943	2R_15030943_SNP [dm3] 2R_19143438_SNP [dm6]	T	C	1.465e^-4	0.863	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21520393	3R_21520393_SNP [dm3] 3R_25694671_SNP [dm6]	A	G	1.471e^-4	0.863	INTERGENIC
2L	20562124	2L_20562124_SNP [dm3] 2L_20562124_SNP [dm6]	G	T	1.491e^-4	0.863	UPSTREAM CR45347 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	15165269	2L_15165269_SNP [dm3] 2L_15165269_SNP [dm6]	C	T	1.498e^-4	0.863	SYNONYMOUS_CODING CG4168	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17910683	3L_17910683_SNP [dm3] 3L_17917583_SNP [dm6]	G	T	1.505e^-4	0.863	INTERGENIC
3R	5637682	3R_5637682_SNP [dm3] 3R_9811960_SNP [dm6]	A	G	1.506e^-4	0.863	UPSTREAM CG8534 INTRON CR44035	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	7821876	3R_7821876_SNP [dm3] 3R_11996154_SNP [dm6]	A	T	1.506e^-4	0.863	INTRON Tk
3R	7833573	3R_7833573_SNP [dm3] 3R_12007851_SNP [dm6]	T	C	1.506e^-4	0.863	UTR_3_PRIME KLHL18 DOWNSTREAM KLHL18
3R	7833808	3R_7833808_SNP [dm3] 3R_12008086_SNP [dm6]	C	A	1.506e^-4	0.863	DOWNSTREAM KLHL18 INTRON KLHL18
2L	11433548	2L_11433548_SNP [dm3] 2L_11433548_SNP [dm6]	T	C	1.517e^-4	0.863	DOWNSTREAM salm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7856690	3R_7856690_SNP [dm3] 3R_12030968_SNP [dm6]	C	G	1.518e^-4	0.863	INTRON CG31358 & 2 others
3R	7841534	3R_7841534_SNP [dm3] 3R_12015812_SNP [dm6]	G	A	1.522e^-4	0.863	SYNONYMOUS_CODING CG3313 DOWNSTREAM GCC185	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	17910682	3L_17910682_SNP [dm3] 3L_17917582_SNP [dm6]	C	T	1.524e^-4	0.863	INTERGENIC
3L	4159537	3L_4159537_SNP [dm3] 3L_4159537_SNP [dm6]	G	A	1.534e^-4	0.863	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	15387655	2R_15387655_SNP [dm3] 2R_19500150_SNP [dm6]	G	A	1.545e^-4	0.863	SYNONYMOUS_CODING CG15120 DOWNSTREAM CG16926
2L	9136660	2L_9136660_SNP [dm3] 2L_9136660_SNP [dm6]	G	C	1.547e^-4	0.863	INTRON CG32982
3L	16232155	3L_16232155_SNP [dm3] 3L_16239055_SNP [dm6]	G	A	1.551e^-4	0.863	SYNONYMOUS_CODING l_3_72Dr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	583569	X_583569_SNP [dm3] X_689536_SNP [dm6]	C	T	1.558e^-4	0.863	INTRON sdk	TF binding site BDTNP1_TFBS_da
2R	10671981	2R_10671981_SNP [dm3] 2R_14784476_SNP [dm6]	A	G	1.559e^-4	0.863	INTRON kn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	17910648	3L_17910648_SNP [dm3] 3L_17917548_SNP [dm6]	A	G	1.564e^-4	0.863	INTERGENIC
3R	21270457	3R_21270457_SNP [dm3] 3R_25444735_SNP [dm6]	T	G	1.567e^-4	0.863	INTRON Fur1
3L	8507684	3L_8507684_SNP [dm3] 3L_8514584_SNP [dm6]	G	A	1.569e^-4	0.863	NON_SYNONYMOUS_CODING CG6683 INTRON CG6765	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	540462	2L_540462_DEL [dm3] 2L_540462_DEL [dm6]	TCTAA	T	1.569e^-4	0.863	UTR_3_PRIME ush DOWNSTREAM lwr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19360610	3R_19360610_SNP [dm3] 3R_23534888_SNP [dm6]	C	A	1.572e^-4	0.863	UPSTREAM CG10170 DOWNSTREAM CG16732 INTERGENIC
3R	18808461	3R_18808461_SNP [dm3] 3R_22982739_SNP [dm6]	C	T	1.577e^-4	0.863	INTRON Nha2
2L	9145735	2L_9145735_SNP [dm3] 2L_9145735_SNP [dm6]	A	G	1.586e^-4	0.863	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7827966	3R_7827966_SNP [dm3] 3R_12002244_SNP [dm6]	A	G	1.595e^-4	0.863	INTRON Tk & 1 other
3R	13410278	3R_13410278_SNP [dm3] 3R_17584556_SNP [dm6]	A	G	1.598e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19358464	3R_19358464_SNP [dm3] 3R_23532742_SNP [dm6]	A	G	1.599e^-4	0.863	DOWNSTREAM CG10170 INTERGENIC
2L	18722814	2L_18722814_SNP [dm3] 2L_18722814_SNP [dm6]	G	C	1.605e^-4	0.863	INTRON CG10348
2L	4693730	2L_4693730_SNP [dm3] 2L_4693730_SNP [dm6]	G	T	1.612e^-4	0.863	UPSTREAM CG34351 INTERGENIC
2R	12832808	2R_12832808_SNP [dm3] 2R_16945303_SNP [dm6]	A	C	1.618e^-4	0.863	UPSTREAM CG15614 DOWNSTREAM Pkc53E INTERGENIC
3R	25963074	3R_25963074_DEL [dm3] 3R_30137352_DEL [dm6]	CC	C	1.631e^-4	0.863	INTRON AdoR	TF binding site mE1_TFBS_cad
X	8533441	X_8533441_SNP [dm3] X_8639408_SNP [dm6]	C	T	1.641e^-4	0.863	INTRON oc	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	14134227	2L_14134227_SNP [dm3] 2L_14134227_SNP [dm6]	G	C	1.642e^-4	0.863	UPSTREAM CG17341 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22549262	3R_22549262_SNP [dm3] 3R_26723540_SNP [dm6]	C	T	1.645e^-4	0.863	INTRON CG6420	TF binding site mE1_TFBS_cad
2R	10135727	2R_10135727_SNP [dm3] 2R_14248222_SNP [dm6]	C	A	1.649e^-4	0.863	SYNONYMOUS_CODING Mdr50
3R	19358322	3R_19358322_DEL [dm3] 3R_23532600_DEL [dm6]	TTT	T	1.654e^-4	0.863	DOWNSTREAM CG10170 INTERGENIC
X	6503382	X_6503382_SNP [dm3] X_6609349_SNP [dm6]	T	A	1.675e^-4	0.863	INTRON pigs
3R	17625072	3R_17625072_SNP [dm3] 3R_21799350_SNP [dm6]	T	A	1.679e^-4	0.863	UPSTREAM mir-4969 INTRON CASK
2L	18873471	2L_18873471_SNP [dm3] 2L_18873471_SNP [dm6]	A	T	1.680e^-4	0.863	INTRON tup	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10750284	3L_10750284_SNP [dm3] 3L_10757184_SNP [dm6]	A	G	1.681e^-4	0.863	INTERGENIC
3R	19362708	3R_19362708_SNP [dm3] 3R_23536986_SNP [dm6]	A	C	1.681e^-4	0.863	UPSTREAM CG16732 DOWNSTREAM CG10168 INTERGENIC
3L	19233556	3L_19233556_SNP [dm3] 3L_19240456_SNP [dm6]	C	T	1.689e^-4	0.863	UPSTREAM CR43892 INTERGENIC
3L	12862127	3L_12862127_DEL [dm3] 3L_12869027_DEL [dm6]	TC	T	1.690e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1068158	X_1068158_SNP [dm3] X_1174125_SNP [dm6]	C	T	1.691e^-4	0.863	UTR_3_PRIME CG11384 DOWNSTREAM CG11378
2R	15030884	2R_15030884_SNP [dm3] 2R_19143379_SNP [dm6]	A	T	1.693e^-4	0.863	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4668381	X_4668381_SNP [dm3] X_4774348_SNP [dm6]	C	A	1.703e^-4	0.863	DOWNSTREAM CR45515 INTERGENIC
X	14800463	X_14800463_SNP [dm3] X_14906430_SNP [dm6]	A	G	1.706e^-4	0.863	UTR_3_PRIME CG9509 UPSTREAM CG9512 INTRON Flo2	TF binding site mE1_TFBS_HSA
X	14800464	X_14800464_SNP [dm3] X_14906431_SNP [dm6]	A	G	1.706e^-4	0.863	UTR_3_PRIME CG9509 UPSTREAM CG9512 INTRON Flo2	TF binding site mE1_TFBS_HSA
2L	9074535	2L_9074535_SNP [dm3] 2L_9074535_SNP [dm6]	A	T	1.714e^-4	0.863	INTERGENIC
2L	548846	2L_548846_SNP [dm3] 2L_548846_SNP [dm6]	C	G	1.717e^-4	0.863	INTRON Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	15248796	2L_15248796_SNP [dm3] 2L_15248796_SNP [dm6]	T	A	1.724e^-4	0.863	UPSTREAM dao INTERGENIC	TF binding site mE1_TFBS_cad
3R	8529026	3R_8529026_SNP [dm3] 3R_12703304_SNP [dm6]	G	A	1.724e^-4	0.863	INTRON Past1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19177967	3L_19177967_SNP [dm3] 3L_19184867_SNP [dm6]	C	A	1.731e^-4	0.863	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	548844	2L_548844_SNP [dm3] 2L_548844_SNP [dm6]	G	A	1.732e^-4	0.863	INTRON Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	13703841	X_13703841_SNP [dm3] X_13809808_SNP [dm6]	G	C	1.739e^-4	0.863	SYNONYMOUS_CODING inaE UTR_3_PRIME inaE	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25949130	3R_25949130_SNP [dm3] 3R_30123408_SNP [dm6]	A	G	1.740e^-4	0.863	UPSTREAM CG45072 DOWNSTREAM CG45073 INTERGENIC
2L	18883406	2L_18883406_SNP [dm3] 2L_18883406_SNP [dm6]	G	A	1.750e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16343945	2R_16343945_SNP [dm3] 2R_20456440_SNP [dm6]	C	T	1.764e^-4	0.863	INTRON CG12484
2R	8385059	2R_8385059_SNP [dm3] 2R_12497554_SNP [dm6]	G	A	1.769e^-4	0.863	INTRON fdl & 1 other	TF binding site mE1_TFBS_inv
3R	18834854	3R_18834854_SNP [dm3] 3R_23009132_SNP [dm6]	T	C	1.773e^-4	0.863	INTRON CG34375
X	17240432	X_17240432_SNP [dm3] X_17346399_SNP [dm6]	A	G	1.775e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9033819	3R_9033819_SNP [dm3] 3R_13208097_SNP [dm6]	T	A	1.777e^-4	0.863	DOWNSTREAM CG8483 INTERGENIC	TF binding site mE1_TFBS_Trl
X	2493191	X_2493191_SNP [dm3] X_2599158_SNP [dm6]	A	G	1.779e^-4	0.863	UTR_3_PRIME Klp3A DOWNSTREAM Klp3A & 1 other
X	2493193	X_2493193_SNP [dm3] X_2599160_SNP [dm6]	G	A	1.779e^-4	0.863	UTR_3_PRIME Klp3A DOWNSTREAM Klp3A & 1 other
2R	7313263	2R_7313263_SNP [dm3] 2R_11425758_SNP [dm6]	A	C	1.779e^-4	0.863	INTRON Drip	TF binding site mE1_TFBS_inv
2L	1836124	2L_1836124_SNP [dm3] 2L_1836124_SNP [dm6]	C	T	1.783e^-4	0.863	UPSTREAM wry INTERGENIC
2L	18719106	2L_18719106_SNP [dm3] 2L_18719106_SNP [dm6]	T	C	1.797e^-4	0.863	INTRON CG10348
2R	19182565	2R_19182565_INS [dm3] 2R_23295042_INS [dm6]	C	CCTTTC	1.799e^-4	0.863	INTERGENIC
2L	20035031	2L_20035031_SNP [dm3] 2L_20035031_SNP [dm6]	C	T	1.817e^-4	0.863	INTRON sNPF
3L	10487912	3L_10487912_SNP [dm3] 3L_10494812_SNP [dm6]	T	C	1.821e^-4	0.863	INTRON A2bp1
2L	1833483	2L_1833483_SNP [dm3] 2L_1833483_SNP [dm6]	C	T	1.823e^-4	0.863	UPSTREAM c-cup INTERGENIC
2L	1841867	2L_1841867_SNP [dm3] 2L_1841867_SNP [dm6]	C	G	1.830e^-4	0.863	INTRON wry
X	557436	X_557436_SNP [dm3] X_663403_SNP [dm6]	A	T	1.835e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_sens
2R	12381091	2R_12381091_SNP [dm3] 2R_16493586_SNP [dm6]	A	G	1.836e^-4	0.863	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1836281	2L_1836281_SNP [dm3] 2L_1836281_SNP [dm6]	C	A	1.839e^-4	0.863	UPSTREAM wry INTERGENIC
2R	16076518	2R_16076518_SNP [dm3] 2R_20189013_SNP [dm6]	C	T	1.874e^-4	0.863	INTERGENIC
3L	4103004	3L_4103004_SNP [dm3] 3L_4103004_SNP [dm6]	A	G	1.882e^-4	0.863	SPLICE_SITE_REGION CG14995 UPSTREAM CG14995 & 1 other INTRON CG14995	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4511272	3L_4511272_SNP [dm3] 3L_4511272_SNP [dm6]	G	A	1.889e^-4	0.863	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	517109	X_517109_SNP [dm3] X_623076_SNP [dm6]	A	G	1.891e^-4	0.863	UPSTREAM CG13369 DOWNSTREAM mod_r_ INTERGENIC
X	4588793	X_4588793_SNP [dm3] X_4694760_SNP [dm6]	C	T	1.892e^-4	0.863	INTRON ctp	TF binding site mE1_TFBS_Trl
3R	21688537	3R_21688537_SNP [dm3] 3R_25862815_SNP [dm6]	T	C	1.903e^-4	0.863	INTRON CG5890
3R	18825226	3R_18825226_SNP [dm3] 3R_22999504_SNP [dm6]	C	T	1.910e^-4	0.863	UPSTREAM Nha2 DOWNSTREAM CG34375 INTERGENIC
2L	15430410	2L_15430410_SNP [dm3] 2L_15430410_SNP [dm6]	G	C	1.917e^-4	0.863	INTERGENIC
3R	9973669	3R_9973669_SNP [dm3] 3R_14147947_SNP [dm6]	A	C	1.932e^-4	0.863	DOWNSTREAM CG14355 INTERGENIC
2L	18863699	2L_18863699_SNP [dm3] 2L_18863699_SNP [dm6]	A	C	1.938e^-4	0.863	INTRON tup
3R	9266848	3R_9266848_SNP [dm3] 3R_13441126_SNP [dm6]	G	A	1.940e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18825757	3R_18825757_SNP [dm3] 3R_23000035_SNP [dm6]	G	T	1.946e^-4	0.863	DOWNSTREAM CG34375 INTERGENIC
X	2359121	X_2359121_SNP [dm3] X_2465088_SNP [dm6]	A	G	1.951e^-4	0.863	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	13259198	X_13259198_SNP [dm3] X_13365165_SNP [dm6]	G	A	1.952e^-4	0.863	NON_SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9435679	2R_9435679_DEL [dm3] 2R_13548174_DEL [dm6]	TTTAT	T	1.955e^-4	0.863	UPSTREAM CG6145 DOWNSTREAM CG33156 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21539770	3R_21539770_SNP [dm3] 3R_25714048_SNP [dm6]	C	A	1.956e^-4	0.863	INTRON LpR2
X	3266089	X_3266089_SNP [dm3] X_3372056_SNP [dm6]	C	T	1.961e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	15489630	3L_15489630_INS [dm3] 3L_15496530_INS [dm6]	T	TTA	1.961e^-4	0.863	UPSTREAM CG12355 & 1 other INTERGENIC
2R	15030882	2R_15030882_SNP [dm3] 2R_19143377_SNP [dm6]	G	A	1.962e^-4	0.863	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25951697	3R_25951697_SNP [dm3] 3R_30125975_SNP [dm6]	A	G	1.962e^-4	0.863	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo
3R	19345268	3R_19345268_SNP [dm3] 3R_23519546_SNP [dm6]	G	C	1.967e^-4	0.863	UPSTREAM Irk2 DOWNSTREAM CG10177 INTERGENIC
3R	19885317	3R_19885317_SNP [dm3] 3R_24059595_SNP [dm6]	C	T	1.967e^-4	0.863	SYNONYMOUS_CODING SMC1	TF binding site mE1_TFBS_sens
3L	8944459	3L_8944459_SNP [dm3] 3L_8951359_SNP [dm6]	A	T	1.970e^-4	0.863	INTRON orb2 & 1 other
3L	15729285	3L_15729285_SNP [dm3] 3L_15736185_SNP [dm6]	C	A	1.972e^-4	0.863	INTERGENIC
3R	8157429	3R_8157429_SNP [dm3] 3R_12331707_SNP [dm6]	A	G	1.988e^-4	0.863	INTERGENIC
X	558934	X_558934_SNP [dm3] X_664901_SNP [dm6]	A	G	1.996e^-4	0.863	INTERGENIC
X	3538864	X_3538864_SNP [dm3] X_3644831_SNP [dm6]	A	G	1.998e^-4	0.863	INTRON AstA-R1
3L	11845568	3L_11845568_SNP [dm3] 3L_11852468_SNP [dm6]	G	T	2.000e^-4	0.863	SYNONYMOUS_CODING CG44837	TF binding site mE1_TFBS_chinmo
X	558924	X_558924_INS [dm3] X_664891_INS [dm6]	T	TTT	2.007e^-4	0.863	INTERGENIC
2L	18911686	2L_18911686_SNP [dm3] 2L_18911686_SNP [dm6]	T	C	2.012e^-4	0.863	INTERGENIC
2L	12144757	2L_12144757_SNP [dm3] 2L_12144757_SNP [dm6]	G	T	2.014e^-4	0.863	UPSTREAM CG31760 INTRON CG31760
2L	5826685	2L_5826685_SNP [dm3] 2L_5826685_SNP [dm6]	A	C	2.022e^-4	0.863	INTRON TrissinR
X	5206588	X_5206588_SNP [dm3] X_5312555_SNP [dm6]	T	A	2.028e^-4	0.863	SYNONYMOUS_CODING dhd UPSTREAM TrxT & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1409263	X_1409263_DEL [dm3] X_1515230_DEL [dm6]	GGAACT	G	2.028e^-4	0.863	INTRON inc
2L	5840039	2L_5840039_SNP [dm3] 2L_5840039_SNP [dm6]	A	G	2.031e^-4	0.863	INTRON TrissinR
3R	21575308	3R_21575308_SNP [dm3] 3R_25749586_SNP [dm6]	C	T	2.038e^-4	0.863	INTRON LpR1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7535575	X_7535575_SNP [dm3] X_7641542_SNP [dm6]	T	C	2.044e^-4	0.863	INTRON ct
3R	18824637	3R_18824637_SNP [dm3] 3R_22998915_SNP [dm6]	C	T	2.046e^-4	0.863	UPSTREAM Nha2 INTERGENIC
3R	19915144	3R_19915144_SNP [dm3] 3R_24089422_SNP [dm6]	A	G	2.050e^-4	0.863	INTRON 4EHP
2R	7521481	2R_7521481_SNP [dm3] 2R_11633976_SNP [dm6]	C	T	2.053e^-4	0.863	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	18941942	2R_18941942_SNP [dm3] 2R_23054419_SNP [dm6]	C	G	2.053e^-4	0.863	INTERGENIC
2L	8681378	2L_8681378_SNP [dm3] 2L_8681378_SNP [dm6]	A	T	2.057e^-4	0.863	UTR_3_PRIME CG9289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	22488585	3R_22488585_SNP [dm3] 3R_26662863_SNP [dm6]	C	T	2.070e^-4	0.863	INTRON beat-VII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20797397	3R_20797397_DEL [dm3] 3R_24971675_DEL [dm6]	AA	A	2.072e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	17910689	3L_17910689_SNP [dm3] 3L_17917589_SNP [dm6]	C	T	2.075e^-4	0.863	INTERGENIC
3R	16799487	3R_16799487_SNP [dm3] 3R_20973765_SNP [dm6]	T	G	2.076e^-4	0.863	INTRON Atpalpha
2R	9056014	2R_9056014_SNP [dm3] 2R_13168509_SNP [dm6]	G	C	2.078e^-4	0.863	UTR_5_PRIME Spt-I UPSTREAM Spt-I & 1 other EXON CR45142	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	4510237	3L_4510237_SNP [dm3] 3L_4510237_SNP [dm6]	A	C	2.078e^-4	0.863	DOWNSTREAM Tie INTERGENIC
2L	15790503	2L_15790503_SNP [dm3] 2L_15790503_SNP [dm6]	T	A	2.100e^-4	0.863	DOWNSTREAM CG18109 INTERGENIC
3R	21688626	3R_21688626_SNP [dm3] 3R_25862904_SNP [dm6]	T	C	2.109e^-4	0.863	INTRON CG5890
2L	19142022	2L_19142022_SNP [dm3] 2L_19142022_SNP [dm6]	C	A	2.113e^-4	0.863	INTRON brat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12794094	2R_12794094_SNP [dm3] 2R_16906589_SNP [dm6]	A	T	2.114e^-4	0.863	INTERGENIC
2L	5457340	2L_5457340_SNP [dm3] 2L_5457340_SNP [dm6]	A	T	2.116e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
3L	8574335	3L_8574335_SNP [dm3] 3L_8581235_SNP [dm6]	A	C	2.117e^-4	0.863	INTRON CG43078
3R	25940686	3R_25940686_SNP [dm3] 3R_30114964_SNP [dm6]	T	C	2.122e^-4	0.863	INTRON sima
3R	22882409	3R_22882409_INS [dm3] 3R_27056687_INS [dm6]	C	CCCCC	2.136e^-4	0.863	INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	1037025	X_1037025_SNP [dm3] X_1142992_SNP [dm6]	C	T	2.136e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5404475	2L_5404475_SNP [dm3] 2L_5404475_SNP [dm6]	A	T	2.136e^-4	0.863	START_GAINED H15 UTR_5_PRIME H15 UPSTREAM H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	18688362	3R_18688362_SNP [dm3] 3R_22862640_SNP [dm6]	A	G	2.138e^-4	0.863	INTERGENIC
3R	7804045	3R_7804045_SNP [dm3] 3R_11978323_SNP [dm6]	C	G	2.138e^-4	0.863	UPSTREAM CR44135 DOWNSTREAM CG18547 INTERGENIC
3R	25611636	3R_25611636_SNP [dm3] 3R_29785914_SNP [dm6]	T	C	2.142e^-4	0.863	INTRON kay
3L	17905094	3L_17905094_SNP [dm3] 3L_17911994_SNP [dm6]	G	C	2.144e^-4	0.863	SYNONYMOUS_CODING CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15031080	2R_15031080_SNP [dm3] 2R_19143575_SNP [dm6]	T	A	2.145e^-4	0.863	UPSTREAM CR43399 INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22814414	3R_22814414_SNP [dm3] 3R_26988692_SNP [dm6]	A	C	2.148e^-4	0.863	UPSTREAM CG31075 DOWNSTREAM CG31076 INTERGENIC
3R	12264798	3R_12264798_SNP [dm3] 3R_16439076_SNP [dm6]	T	A	2.150e^-4	0.863	SYNONYMOUS_CODING ema	TF binding site mE1_TFBS_cad
2L	1844739	2L_1844739_SNP [dm3] 2L_1844739_SNP [dm6]	C	A	2.153e^-4	0.863	INTRON wry
X	3206780	X_3206780_SNP [dm3] X_3312747_SNP [dm6]	A	G	2.160e^-4	0.863	DOWNSTREAM CR44886 INTRON dnc
3L	5778228	3L_5778228_SNP [dm3] 3L_5785128_SNP [dm6]	T	C	2.163e^-4	0.863	DOWNSTREAM PGRP-LD & 1 other INTRON Cralbp
2L	12145188	2L_12145188_SNP [dm3] 2L_12145188_SNP [dm6]	G	A	2.167e^-4	0.863	UTR_5_PRIME CG31760
2L	15767542	2L_15767542_SNP [dm3] 2L_15767542_SNP [dm6]	G	A	2.181e^-4	0.863	SYNONYMOUS_CODING wek	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni mE1_TFBS_HSA mE1_TFBS_sens
X	21134856	X_21134856_DEL [dm3] X_21263829_DEL [dm6]	TGGGCTTTGCAT...	T	2.183e^-4	0.863	INTRON CG32521
2L	10796559	2L_10796559_SNP [dm3] 2L_10796559_SNP [dm6]	G	A	2.186e^-4	0.863	INTRON CG31869
2L	16549523	2L_16549523_SNP [dm3] 2L_16549523_SNP [dm6]	A	G	2.189e^-4	0.863	NON_SYNONYMOUS_CODING CG5968 INTRON CG42389
X	559535	X_559535_SNP [dm3] X_665502_SNP [dm6]	T	G	2.191e^-4	0.863	INTERGENIC	transposable element FlyBase
3L	8964840	3L_8964840_SNP [dm3] 3L_8971740_SNP [dm6]	A	C	2.195e^-4	0.863	UTR_3_PRIME CG5026 DOWNSTREAM pix & 1 other
2L	11787494	2L_11787494_SNP [dm3] 2L_11787494_SNP [dm6]	A	G	2.198e^-4	0.863	UPSTREAM CG14931 INTERGENIC
3L	15763843	3L_15763843_SNP [dm3] 3L_15770743_SNP [dm6]	C	T	2.200e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17929311	2L_17929311_SNP [dm3] 2L_17929311_SNP [dm6]	G	A	2.204e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1620961	2L_1620961_SNP [dm3] 2L_1620961_SNP [dm6]	T	C	2.228e^-4	0.863	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8574337	3L_8574337_SNP [dm3] 3L_8581237_SNP [dm6]	A	T	2.234e^-4	0.863	INTRON CG43078
3L	14722708	3L_14722708_SNP [dm3] 3L_14729608_SNP [dm6]	C	T	2.237e^-4	0.863	DOWNSTREAM CG13473 INTRON ome
2L	11433535	2L_11433535_SNP [dm3] 2L_11433535_SNP [dm6]	T	C	2.237e^-4	0.863	DOWNSTREAM salm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12558500	3L_12558500_SNP [dm3] 3L_12565400_SNP [dm6]	G	C	2.242e^-4	0.863	INTRON sowah	TF binding site BDTNP1_TFBS_twi
3R	18825807	3R_18825807_SNP [dm3] 3R_23000085_SNP [dm6]	T	C	2.243e^-4	0.863	DOWNSTREAM CG34375 INTERGENIC
3L	4510235	3L_4510235_SNP [dm3] 3L_4510235_SNP [dm6]	G	C	2.252e^-4	0.863	DOWNSTREAM Tie INTERGENIC
3R	5919469	3R_5919469_SNP [dm3] 3R_10093747_SNP [dm6]	G	A	2.254e^-4	0.863	UPSTREAM CR43459 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10962929	3R_10962929_SNP [dm3] 3R_15137207_SNP [dm6]	T	C	2.260e^-4	0.863	SYNONYMOUS_CODING CG3984 UPSTREAM CG6912 EXON CR45600	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	10256145	3R_10256145_SNP [dm3] 3R_14430423_SNP [dm6]	G	T	2.261e^-4	0.863	INTRON cv-c
2L	12145182	2L_12145182_SNP [dm3] 2L_12145182_SNP [dm6]	A	G	2.280e^-4	0.863	UTR_5_PRIME CG31760
2R	4202829	2R_4202829_SNP [dm3] 2R_8315324_SNP [dm6]	T	A	2.282e^-4	0.863	INTERGENIC
2L	18863703	2L_18863703_SNP [dm3] 2L_18863703_SNP [dm6]	A	G	2.286e^-4	0.863	INTRON tup
3L	16235795	3L_16235795_SNP [dm3] 3L_16242695_SNP [dm6]	T	C	2.291e^-4	0.863	INTERGENIC
2L	1841848	2L_1841848_SNP [dm3] 2L_1841848_SNP [dm6]	G	C	2.296e^-4	0.863	INTRON wry
3L	10806275	3L_10806275_SNP [dm3] 3L_10813175_SNP [dm6]	C	A	2.296e^-4	0.863	INTERGENIC
3R	21904994	3R_21904994_SNP [dm3] 3R_26079272_SNP [dm6]	C	A	2.301e^-4	0.863	INTRON dys
3L	23221996	3L_23221996_SNP [dm3] 3L_23228896_SNP [dm6]	A	C	2.306e^-4	0.863	INTRON nAChRalpha4
2L	18910500	2L_18910500_SNP [dm3] 2L_18910500_SNP [dm6]	C	G	2.309e^-4	0.863	INTERGENIC
2L	18910691	2L_18910691_SNP [dm3] 2L_18910691_SNP [dm6]	A	G	2.309e^-4	0.863	INTERGENIC
3R	19360794	3R_19360794_SNP [dm3] 3R_23535072_SNP [dm6]	A	C	2.310e^-4	0.863	UTR_3_PRIME CG16732 UPSTREAM CG10170
3L	15703328	3L_15703328_SNP [dm3] 3L_15710228_SNP [dm6]	A	G	2.310e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5906638	2L_5906638_SNP [dm3] 2L_5906638_SNP [dm6]	C	T	2.314e^-4	0.863	UPSTREAM bchs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	16598020	3R_16598020_SNP [dm3] 3R_20772298_SNP [dm6]	C	T	2.316e^-4	0.863	NON_SYNONYMOUS_CODING Takl1 INTRON Syp
3L	4179844	3L_4179844_SNP [dm3] 3L_4179844_SNP [dm6]	G	A	2.328e^-4	0.863	DOWNSTREAM Teh2 INTRON CG18675 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	21520392	3R_21520392_SNP [dm3] 3R_25694670_SNP [dm6]	G	A	2.334e^-4	0.863	INTERGENIC
X	623245	X_623245_SNP [dm3] X_729212_SNP [dm6]	T	C	2.336e^-4	0.863	INTRON sdk
2R	7320083	2R_7320083_INS [dm3] 2R_11432578_INS [dm6]	A	CT	2.337e^-4	0.863	DOWNSTREAM CR43771 INTERGENIC
2R	17096589	2R_17096589_SNP [dm3] 2R_21209084_SNP [dm6]	G	C	2.359e^-4	0.863	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
2L	6281530	2L_6281530_SNP [dm3] 2L_6281530_SNP [dm6]	T	C	2.360e^-4	0.863	INTRON Ddr
2L	12632530	2L_12632530_INS [dm3] 2L_12632530_INS [dm6]	C	CCC	2.362e^-4	0.863	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2446979	3L_2446979_SNP [dm3] 3L_2446979_SNP [dm6]	A	T	2.367e^-4	0.863	INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	19547132	3R_19547132_SNP [dm3] 3R_23721410_SNP [dm6]	A	G	2.374e^-4	0.863	SYNONYMOUS_CODING CG10232	TF binding site mE1_TFBS_HSA
3R	18825772	3R_18825772_INS [dm3] 3R_23000050_INS [dm6]	A	AT	2.374e^-4	0.863	DOWNSTREAM CG34375 INTERGENIC
X	13356130	X_13356130_SNP [dm3] X_13462097_SNP [dm6]	T	C	2.384e^-4	0.863	INTRON Neto
3R	21575290	3R_21575290_SNP [dm3] 3R_25749568_SNP [dm6]	G	A	2.400e^-4	0.863	INTRON LpR1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16064021	X_16064021_SNP [dm3] X_16169988_SNP [dm6]	C	T	2.408e^-4	0.863	INTERGENIC
3L	8944567	3L_8944567_SNP [dm3] 3L_8951467_SNP [dm6]	A	G	2.411e^-4	0.863	INTRON orb2 & 1 other
2R	12146776	2R_12146776_SNP [dm3] 2R_16259271_SNP [dm6]	C	G	2.414e^-4	0.863	UTR_5_PRIME CngA
3L	9365760	3L_9365760_SNP [dm3] 3L_9372660_SNP [dm6]	C	T	2.416e^-4	0.863	UPSTREAM Hsp67Bb & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16861692	2R_16861692_SNP [dm3] 2R_20974187_SNP [dm6]	G	A	2.417e^-4	0.863	UPSTREAM CG15649 INTERGENIC
2R	16861693	2R_16861693_SNP [dm3] 2R_20974188_SNP [dm6]	G	A	2.417e^-4	0.863	UPSTREAM CG15649 INTERGENIC
X	12613912	X_12613912_SNP [dm3] X_12719879_SNP [dm6]	A	G	2.417e^-4	0.863	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8092858	X_8092858_SNP [dm3] X_8198825_SNP [dm6]	C	T	2.421e^-4	0.863	INTRON sdt
2L	1761974	2L_1761974_SNP [dm3] 2L_1761974_SNP [dm6]	A	T	2.426e^-4	0.863	INTERGENIC
2L	4786649	2L_4786649_SNP [dm3] 2L_4786649_SNP [dm6]	G	A	2.428e^-4	0.863	INTRON CG15630
3L	8574347	3L_8574347_SNP [dm3] 3L_8581247_SNP [dm6]	T	C	2.434e^-4	0.863	INTRON CG43078
3L	7981708	3L_7981708_SNP [dm3] 3L_7988608_SNP [dm6]	C	T	2.438e^-4	0.863	INTRON nmo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	12264660	3R_12264660_SNP [dm3] 3R_16438938_SNP [dm6]	G	A	2.439e^-4	0.863	SYNONYMOUS_CODING ema	TF binding site mE1_TFBS_cad
3R	19836044	3R_19836044_SNP [dm3] 3R_24010322_SNP [dm6]	T	A	2.449e^-4	0.863	INTRON KrT95D
2L	18943045	2L_18943045_SNP [dm3] 2L_18943045_SNP [dm6]	C	T	2.451e^-4	0.863	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	3538415	X_3538415_SNP [dm3] X_3644382_SNP [dm6]	G	T	2.453e^-4	0.863	INTRON AstA-R1
2L	18800456	2L_18800456_SNP [dm3] 2L_18800456_SNP [dm6]	C	T	2.455e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	18975745	2L_18975745_SNP [dm3] 2L_18975745_SNP [dm6]	A	T	2.457e^-4	0.863	NON_SYNONYMOUS_CODING CG10431	TF binding site mE1_TFBS_sens
3R	18972719	3R_18972719_SNP [dm3] 3R_23146997_SNP [dm6]	T	C	2.460e^-4	0.863	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9246217	2L_9246217_DEL [dm3] 2L_9246217_DEL [dm6]	AT	A	2.461e^-4	0.863	UTR_3_PRIME tai
3R	25962445	3R_25962445_SNP [dm3] 3R_30136723_SNP [dm6]	G	A	2.468e^-4	0.863	SYNONYMOUS_CODING AdoR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19828605	3R_19828605_SNP [dm3] 3R_24002883_SNP [dm6]	A	T	2.471e^-4	0.863	INTRON KrT95D
2L	18887629	2L_18887629_INS [dm3] 2L_18887629_INS [dm6]	C	CC	2.471e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	4203764	2R_4203764_SNP [dm3] 2R_8316259_SNP [dm6]	G	A	2.477e^-4	0.863	INTERGENIC
3L	4943733	3L_4943733_SNP [dm3] 3L_4943733_SNP [dm6]	A	T	2.478e^-4	0.863	INTRON Con
X	15423013	X_15423013_DEL [dm3] X_15528980_DEL [dm6]	AA	A	2.479e^-4	0.863	INTRON Ac13E
3L	17904947	3L_17904947_SNP [dm3] 3L_17911847_SNP [dm6]	T	C	2.481e^-4	0.863	SYNONYMOUS_CODING CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18969276	2L_18969276_SNP [dm3] 2L_18969276_SNP [dm6]	G	C	2.482e^-4	0.863	NON_SYNONYMOUS_CODING Tango6 UPSTREAM Nak	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	5906094	2L_5906094_SNP [dm3] 2L_5906094_SNP [dm6]	G	C	2.482e^-4	0.863	EXON CR43808	TF binding site BDTNP1_TFBS_dl
3R	15362007	3R_15362007_SNP [dm3] 3R_19536285_SNP [dm6]	T	G	2.502e^-4	0.863	INTRON Dys
2R	16157419	2R_16157419_SNP [dm3] 2R_20269914_SNP [dm6]	C	T	2.504e^-4	0.863	NON_SYNONYMOUS_CODING CG8908	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8893006	X_8893006_SNP [dm3] X_8998973_SNP [dm6]	T	A	2.511e^-4	0.863	INTRON rdgA & 1 other
3R	12954933	3R_12954933_SNP [dm3] 3R_17129211_SNP [dm6]	G	T	2.519e^-4	0.863	DOWNSTREAM CG17475 & 1 other INTERGENIC
2L	14544909	2L_14544909_SNP [dm3] 2L_14544909_SNP [dm6]	G	A	2.521e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7527521	2R_7527521_SNP [dm3] 2R_11640016_SNP [dm6]	C	A	2.526e^-4	0.863	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	849757	X_849757_SNP [dm3] X_955724_SNP [dm6]	T	G	2.534e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3197437	3L_3197437_SNP [dm3] 3L_3197437_SNP [dm6]	T	C	2.535e^-4	0.863	SYNONYMOUS_CODING CG14966 DOWNSTREAM CG32276 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9634221	3L_9634221_SNP [dm3] 3L_9641121_SNP [dm6]	G	A	2.537e^-4	0.863	SYNONYMOUS_CODING CG18180 DOWNSTREAM CG18179 INTRON fry	TF binding site mE1_TFBS_cad
3R	6861808	3R_6861808_SNP [dm3] 3R_11036086_SNP [dm6]	A	G	2.541e^-4	0.863	INTRON CG34114
3R	25641688	3R_25641688_SNP [dm3] 3R_29815966_SNP [dm6]	G	A	2.544e^-4	0.863	SYNONYMOUS_CODING Vps16B DOWNSTREAM ca & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	559628	X_559628_SNP [dm3] X_665595_SNP [dm6]	T	G	2.546e^-4	0.863	INTERGENIC	transposable element FlyBase
3R	20740169	3R_20740169_SNP [dm3] 3R_24914447_SNP [dm6]	A	G	2.549e^-4	0.863	SPLICE_SITE_REGION PIG-S UPSTREAM tRNA:CR31382 DOWNSTREAM CR44267 & 1 other INTRON PIG-S
2L	1847778	2L_1847778_SNP [dm3] 2L_1847778_SNP [dm6]	G	A	2.557e^-4	0.863	INTRON wry
2L	19007850	2L_19007850_SNP [dm3] 2L_19007850_SNP [dm6]	C	G	2.558e^-4	0.863	NON_SYNONYMOUS_CODING CG31793 DOWNSTREAM RpL30 & 1 other
2R	18941905	2R_18941905_SNP [dm3] 2R_23054382_SNP [dm6]	G	T	2.560e^-4	0.863	INTERGENIC
2R	16290003	2R_16290003_SNP [dm3] 2R_20402498_SNP [dm6]	G	T	2.561e^-4	0.863	INTERGENIC
2L	15248800	2L_15248800_SNP [dm3] 2L_15248800_SNP [dm6]	A	T	2.564e^-4	0.863	UPSTREAM dao INTERGENIC	TF binding site mE1_TFBS_cad
X	586212	X_586212_SNP [dm3] X_692179_SNP [dm6]	T	C	2.564e^-4	0.863	INTRON sdk
2R	11471353	2R_11471353_SNP [dm3] 2R_15583848_SNP [dm6]	C	A	2.567e^-4	0.863	INTERGENIC
2R	13630500	2R_13630500_SNP [dm3] 2R_17742995_SNP [dm6]	A	G	2.568e^-4	0.863	INTRON CG4996
2R	17153259	2R_17153259_SNP [dm3] 2R_21265754_SNP [dm6]	A	G	2.574e^-4	0.863	SYNONYMOUS_CODING CG30391 DOWNSTREAM CG30393 INTRON Rgk3
3L	849061	3L_849061_SNP [dm3] 3L_849061_SNP [dm6]	T	C	2.574e^-4	0.863	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad
2L	12699054	2L_12699054_SNP [dm3] 2L_12699054_SNP [dm6]	T	C	2.577e^-4	0.863	UTR_3_PRIME CG17036 DOWNSTREAM PICK1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22657826	3R_22657826_SNP [dm3] 3R_26832104_SNP [dm6]	A	C	2.582e^-4	0.863	INTRON Tl
3R	25962424	3R_25962424_SNP [dm3] 3R_30136702_SNP [dm6]	G	A	2.583e^-4	0.863	SYNONYMOUS_CODING AdoR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	586214	X_586214_SNP [dm3] X_692181_SNP [dm6]	C	A	2.589e^-4	0.863	INTRON sdk
2L	1831524	2L_1831524_SNP [dm3] 2L_1831524_SNP [dm6]	T	C	2.592e^-4	0.863	DOWNSTREAM c-cup & 1 other INTERGENIC
2R	7320086	2R_7320086_SNP [dm3] 2R_11432581_SNP [dm6]	C	A	2.609e^-4	0.863	DOWNSTREAM CR43771 INTERGENIC
3R	17824776	3R_17824776_SNP [dm3] 3R_21999054_SNP [dm6]	G	T	2.614e^-4	0.863	INTRON Eip93F
3L	13122446	3L_13122446_SNP [dm3] 3L_13129346_SNP [dm6]	G	C	2.615e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18078138	3R_18078138_SNP [dm3] 3R_22252416_SNP [dm6]	A	C	2.626e^-4	0.863	INTRON SKIP
2R	11502092	2R_11502092_SNP [dm3] 2R_15614587_SNP [dm6]	C	T	2.626e^-4	0.863	START_GAINED CG42524 UTR_5_PRIME CG42524	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18824451	3R_18824451_SNP [dm3] 3R_22998729_SNP [dm6]	T	A	2.632e^-4	0.863	UPSTREAM Nha2 DOWNSTREAM CR43454 INTERGENIC
3R	7820589	3R_7820589_INS [dm3] 3R_11994867_INS [dm6]	A	AACAAGCCAAGTCAGT...	2.632e^-4	0.863	INTRON Tk
2R	19649141	2R_19649141_SNP [dm3] 2R_23761618_SNP [dm6]	C	G	2.641e^-4	0.863	INTRON CG9850
2L	12113120	2L_12113120_SNP [dm3] 2L_12113120_SNP [dm6]	C	T	2.642e^-4	0.863	DOWNSTREAM Phae2 INTERGENIC
3L	17905232	3L_17905232_SNP [dm3] 3L_17912132_SNP [dm6]	T	A	2.645e^-4	0.863	NON_SYNONYMOUS_CODING CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	962506	3L_962506_SNP [dm3] 3L_962506_SNP [dm6]	G	T	2.646e^-4	0.863	INTRON Glut1
3R	21688656	3R_21688656_SNP [dm3] 3R_25862934_SNP [dm6]	T	C	2.650e^-4	0.863	INTRON CG5890
3L	3500902	3L_3500902_SNP [dm3] 3L_3500902_SNP [dm6]	G	T	2.654e^-4	0.863	INTRON CG42324
2R	15031106	2R_15031106_SNP [dm3] 2R_19143601_SNP [dm6]	C	G	2.657e^-4	0.863	UPSTREAM CR43399 INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	6752435	3R_6752435_SNP [dm3] 3R_10926713_SNP [dm6]	C	T	2.664e^-4	0.863	INTERGENIC
3L	17910656	3L_17910656_DEL [dm3] 3L_17917556_DEL [dm6]	TAC	T	2.673e^-4	0.863	INTERGENIC
3R	12958302	3R_12958302_INS [dm3] 3R_17132580_INS [dm6]	C	CT	2.678e^-4	0.863	UPSTREAM CG31266 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	12958336	3R_12958336_SNP [dm3] 3R_17132614_SNP [dm6]	C	A	2.678e^-4	0.863	UPSTREAM CG31266 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	19011265	X_19011265_INS [dm3] X_19117232_INS [dm6]	C	CAA	2.682e^-4	0.863	INTERGENIC
2R	16694131	2R_16694131_SNP [dm3] 2R_20806626_SNP [dm6]	G	T	2.688e^-4	0.863	INTERGENIC
2L	1832982	2L_1832982_SNP [dm3] 2L_1832982_SNP [dm6]	A	G	2.688e^-4	0.863	UPSTREAM c-cup INTERGENIC
3L	1669522	3L_1669522_SNP [dm3] 3L_1669522_SNP [dm6]	T	A	2.691e^-4	0.863	UPSTREAM RpL23A DOWNSTREAM CG13930 INTRON RabX5	TF binding site mE1_TFBS_chinmo
3R	19826648	3R_19826648_SNP [dm3] 3R_24000926_SNP [dm6]	T	G	2.700e^-4	0.863	INTRON KrT95D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	559604	X_559604_SNP [dm3] X_665571_SNP [dm6]	T	C	2.701e^-4	0.863	INTERGENIC	transposable element FlyBase
2L	1841860	2L_1841860_SNP [dm3] 2L_1841860_SNP [dm6]	A	G	2.704e^-4	0.863	INTRON wry
3L	14972258	3L_14972258_DEL [dm3] 3L_14979158_DEL [dm6]	TCCTACA	T	2.713e^-4	0.863	UPSTREAM CG3349 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3R	23802608	3R_23802608_SNP [dm3] 3R_27976886_SNP [dm6]	A	C	2.723e^-4	0.863	INTRON betaTub97EF
3L	16172125	3L_16172125_INS [dm3] 3L_16179025_INS [dm6]	A	ATATTAAT	2.730e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6539040	X_6539040_SNP [dm3] X_6645007_SNP [dm6]	T	A	2.734e^-4	0.863	INTRON pigs
3L	15091041	3L_15091041_SNP [dm3] 3L_15097941_SNP [dm6]	T	A	2.744e^-4	0.863	UTR_5_PRIME CTPsyn UPSTREAM CTPsyn DOWNSTREAM CR43973 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	13283507	X_13283507_SNP [dm3] X_13389474_SNP [dm6]	G	C	2.745e^-4	0.863	DOWNSTREAM CG1662 & 1 other INTERGENIC
2L	15342172	2L_15342172_SNP [dm3] 2L_15342172_SNP [dm6]	G	A	2.757e^-4	0.863	INTERGENIC
2L	15444393	2L_15444393_SNP [dm3] 2L_15444393_SNP [dm6]	G	A	2.765e^-4	0.863	INTERGENIC
3R	13418734	3R_13418734_SNP [dm3] 3R_17593012_SNP [dm6]	A	T	2.776e^-4	0.863	INTERGENIC
3R	23604241	3R_23604241_SNP [dm3] 3R_27778519_SNP [dm6]	C	T	2.786e^-4	0.863	SPLICE_SITE_REGION CG34353 INTRON CG34353
3L	3199069	3L_3199069_SNP [dm3] 3L_3199069_SNP [dm6]	T	C	2.787e^-4	0.863	UPSTREAM gry & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	5887991	2L_5887991_SNP [dm3] 2L_5887991_SNP [dm6]	A	G	2.791e^-4	0.863	UPSTREAM CR44578 & 1 other INTERGENIC
3R	12301627	3R_12301627_SNP [dm3] 3R_16475905_SNP [dm6]	T	A	2.795e^-4	0.863	DOWNSTREAM Gyc-89Da INTERGENIC
3R	20575700	3R_20575700_SNP [dm3] 3R_24749978_SNP [dm6]	T	G	2.800e^-4	0.863	NON_SYNONYMOUS_CODING tld DOWNSTREAM tok	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13283330	X_13283330_INS [dm3] X_13389297_INS [dm6]	A	ACTCTAACTGA...	2.802e^-4	0.863	UTR_3_PRIME CG1662 DOWNSTREAM CG1662 & 1 other
X	6980780	X_6980780_SNP [dm3] X_7086747_SNP [dm6]	C	T	2.805e^-4	0.863	UPSTREAM mir-4956 INTRON Sxl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6981054	X_6981054_SNP [dm3] X_7087021_SNP [dm6]	A	T	2.805e^-4	0.863	INTRON Sxl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
X	6994281	X_6994281_SNP [dm3] X_7100248_SNP [dm6]	G	A	2.805e^-4	0.863	INTRON CG4615	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23802610	3R_23802610_SNP [dm3] 3R_27976888_SNP [dm6]	T	C	2.816e^-4	0.863	INTRON betaTub97EF
X	6969295	X_6969295_SNP [dm3] X_7075262_SNP [dm6]	T	C	2.816e^-4	0.863	UTR_3_PRIME Sxl DOWNSTREAM Sxl
2L	11245632	2L_11245632_SNP [dm3] 2L_11245632_SNP [dm6]	C	T	2.822e^-4	0.863	INTRON ab
2L	13414813	2L_13414813_SNP [dm3] 2L_13414813_SNP [dm6]	A	T	2.831e^-4	0.863	UPSTREAM CG42784 & 2 others INTERGENIC
3R	19835974	3R_19835974_SNP [dm3] 3R_24010252_SNP [dm6]	A	T	2.844e^-4	0.863	INTRON KrT95D
3L	8587635	3L_8587635_SNP [dm3] 3L_8594535_SNP [dm6]	C	T	2.863e^-4	0.863	SYNONYMOUS_CODING CG43078 UTR_3_PRIME CG43078
3L	20399116	3L_20399116_SNP [dm3] 3L_20406016_SNP [dm6]	C	T	2.863e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2R	17487486	2R_17487486_SNP [dm3] 2R_21599981_SNP [dm6]	G	A	2.865e^-4	0.863	INTERGENIC
2R	15032038	2R_15032038_SNP [dm3] 2R_19144533_SNP [dm6]	T	A	2.866e^-4	0.863	UPSTREAM CR43399 INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4424143	X_4424143_SNP [dm3] X_4530110_SNP [dm6]	T	C	2.871e^-4	0.863	UPSTREAM CG3556 INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	20538717	2L_20538717_SNP [dm3] 2L_20538717_SNP [dm6]	T	C	2.872e^-4	0.863	DOWNSTREAM CR45707 INTERGENIC
2R	4202142	2R_4202142_INS [dm3] 2R_8314637_INS [dm6]	A	TT	2.874e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15276199	3L_15276199_SNP [dm3] 3L_15283099_SNP [dm6]	T	C	2.893e^-4	0.863	INTERGENIC
2L	8182259	2L_8182259_SNP [dm3] 2L_8182259_SNP [dm6]	G	T	2.899e^-4	0.863	DOWNSTREAM Piezo INTRON Piezo
3L	3395052	3L_3395052_DEL [dm3] 3L_3395052_DEL [dm6]	TCAAATAGCT	T	2.911e^-4	0.863	DOWNSTREAM CR45737 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	11077255	2L_11077255_SNP [dm3] 2L_11077255_SNP [dm6]	A	C	2.919e^-4	0.863	INTRON AstC	TF binding site BDTNP1_TFBS_hb
X	517668	X_517668_SNP [dm3] X_623635_SNP [dm6]	A	G	2.935e^-4	0.863	UTR_5_PRIME CG13369 DOWNSTREAM mod_r_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	17622479	3R_17622479_SNP [dm3] 3R_21796757_SNP [dm6]	T	C	2.936e^-4	0.863	INTRON CASK	TF binding site mE1_TFBS_inv
3L	2280203	3L_2280203_SNP [dm3] 3L_2280203_SNP [dm6]	T	C	2.939e^-4	0.863	INTERGENIC
2L	18943355	2L_18943355_SNP [dm3] 2L_18943355_SNP [dm6]	T	C	2.939e^-4	0.863	NON_SYNONYMOUS_CODING ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8574349	3L_8574349_MNP [dm3] 3L_8581249_MNP [dm6]	TTCC	CCAT	2.943e^-4	0.863	INTRON CG43078
X	9705005	X_9705005_SNP [dm3] X_9810972_SNP [dm6]	C	T	2.943e^-4	0.863	INTRON CG32698
X	6986571	X_6986571_SNP [dm3] X_7092538_SNP [dm6]	A	G	2.948e^-4	0.863	INTRON Sxl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	22098113	3R_22098113_SNP [dm3] 3R_26272391_SNP [dm6]	T	G	2.951e^-4	0.863	INTRON CG6154
2R	10672102	2R_10672102_SNP [dm3] 2R_14784597_SNP [dm6]	C	A	2.951e^-4	0.863	INTRON kn	TF binding site mE1_TFBS_inv
3R	19915662	3R_19915662_SNP [dm3] 3R_24089940_SNP [dm6]	C	A	2.955e^-4	0.863	INTRON 4EHP
2L	19011837	2L_19011837_DEL [dm3] 2L_19011837_DEL [dm6]	TCGTT	T	2.963e^-4	0.863	UPSTREAM CR45292 DOWNSTREAM robl37BC INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15171922	2R_15171922_SNP [dm3] 2R_19284417_SNP [dm6]	T	G	2.964e^-4	0.863	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	881795	X_881795_SNP [dm3] X_987762_SNP [dm6]	G	A	2.972e^-4	0.863	INTERGENIC
3R	21581956	3R_21581956_SNP [dm3] 3R_25756234_SNP [dm6]	A	T	2.974e^-4	0.863	INTRON LpR1
3R	6355532	3R_6355532_SNP [dm3] 3R_10529810_SNP [dm6]	G	A	2.976e^-4	0.863	INTRON hth
3L	7326510	3L_7326510_SNP [dm3] 3L_7333410_SNP [dm6]	G	T	2.980e^-4	0.863	UTR_3_PRIME mus312 & 1 other DOWNSTREAM CG43780 & 1 other
2L	5342687	2L_5342687_SNP [dm3] 2L_5342687_SNP [dm6]	A	T	2.982e^-4	0.863	UPSTREAM CG12512 INTERGENIC
3R	9041548	3R_9041548_INS [dm3] 3R_13215826_INS [dm6]	C	CCCCAGGTTGTC...	2.990e^-4	0.863	INTERGENIC
3R	14214929	3R_14214929_SNP [dm3] 3R_18389207_SNP [dm6]	G	C	2.994e^-4	0.863	SYNONYMOUS_CODING Vha100-4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7111501	2L_7111501_SNP [dm3] 2L_7111501_SNP [dm6]	C	T	3.001e^-4	0.863	INTRON Pvf3
3L	15528636	3L_15528636_DEL [dm3] 3L_15535536_DEL [dm6]	CA	C	3.003e^-4	0.863	UTR_5_PRIME CrebA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	602341	X_602341_SNP [dm3] X_708308_SNP [dm6]	C	T	3.020e^-4	0.863	INTRON sdk
2R	9055767	2R_9055767_SNP [dm3] 2R_13168262_SNP [dm6]	T	A	3.021e^-4	0.863	UPSTREAM Spt-I & 1 other DOWNSTREAM CR45142 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	22886603	3R_22886603_SNP [dm3] 3R_27060881_SNP [dm6]	C	T	3.024e^-4	0.863	SYNONYMOUS_CODING Nep5
3L	4510817	3L_4510817_SNP [dm3] 3L_4510817_SNP [dm6]	T	C	3.026e^-4	0.863	UTR_3_PRIME Tie
3R	22440675	3R_22440675_SNP [dm3] 3R_26614953_SNP [dm6]	C	T	3.027e^-4	0.863	INTERGENIC
2L	1837097	2L_1837097_DEL [dm3] 2L_1837097_DEL [dm6]	TTT	T	3.051e^-4	0.863	INTRON wry
2R	17487485	2R_17487485_SNP [dm3] 2R_21599980_SNP [dm6]	C	G	3.053e^-4	0.863	INTERGENIC
3L	9002519	3L_9002519_SNP [dm3] 3L_9009419_SNP [dm6]	G	T	3.056e^-4	0.863	NON_SYNONYMOUS_CODING CG5194	TF binding site mE1_TFBS_cad
3R	18412842	3R_18412842_SNP [dm3] 3R_22587120_SNP [dm6]	G	A	3.087e^-4	0.863	UPSTREAM btn & 1 other DOWNSTREAM CG6937 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17824789	3R_17824789_SNP [dm3] 3R_21999067_SNP [dm6]	G	A	3.099e^-4	0.863	INTRON Eip93F
2L	8138478	2L_8138478_SNP [dm3] 2L_8138478_SNP [dm6]	T	C	3.103e^-4	0.863	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15586656	X_15586656_SNP [dm3] X_15692623_SNP [dm6]	T	G	3.103e^-4	0.863	DOWNSTREAM CR45524 & 1 other INTERGENIC
2L	2965553	2L_2965553_SNP [dm3] 2L_2965553_SNP [dm6]	A	G	3.108e^-4	0.863	UTR_3_PRIME Rbp9 DOWNSTREAM Rbp9
3R	10006527	3R_10006527_SNP [dm3] 3R_14180805_SNP [dm6]	G	A	3.111e^-4	0.863	INTRON Dop1R1	TF binding site mE1_TFBS_cad
2L	15336849	2L_15336849_SNP [dm3] 2L_15336849_SNP [dm6]	A	G	3.117e^-4	0.863	DOWNSTREAM esg INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10840187	3L_10840187_SNP [dm3] 3L_10847087_SNP [dm6]	C	T	3.121e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	6137956	2L_6137956_SNP [dm3] 2L_6137956_SNP [dm6]	A	G	3.126e^-4	0.863	DOWNSTREAM CR44824 INTERGENIC
3R	14815091	3R_14815091_SNP [dm3] 3R_18989369_SNP [dm6]	A	T	3.132e^-4	0.863	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3R	16599411	3R_16599411_INS [dm3] 3R_20773689_INS [dm6]	A	AG	3.134e^-4	0.863	INTRON Syp	TF binding site BDTNP1_TFBS_twi
X	7002311	X_7002311_SNP [dm3] X_7108278_SNP [dm6]	C	T	3.151e^-4	0.863	INTRON fz4
X	7002439	X_7002439_SNP [dm3] X_7108406_SNP [dm6]	T	C	3.151e^-4	0.863	SYNONYMOUS_CODING fz4
X	13283327	X_13283327_SNP [dm3] X_13389294_SNP [dm6]	T	A	3.154e^-4	0.863	UTR_3_PRIME CG1662 DOWNSTREAM CG1662 & 1 other
X	561877	X_561877_INS [dm3] X_667844_INS [dm6]	T	TTGT	3.155e^-4	0.863	INTERGENIC
X	3539189	X_3539189_SNP [dm3] X_3645156_SNP [dm6]	C	T	3.164e^-4	0.863	INTRON AstA-R1	transposable element FlyBase
3L	14972252	3L_14972252_SNP [dm3] 3L_14979152_SNP [dm6]	A	G	3.170e^-4	0.863	UPSTREAM CG3349 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3L	21948947	3L_21948947_SNP [dm3] 3L_21955847_SNP [dm6]	C	T	3.170e^-4	0.863	SYNONYMOUS_CODING CG7458	TF binding site mE1_TFBS_Trl
2L	6984356	2L_6984356_SNP [dm3] 2L_6984356_SNP [dm6]	C	T	3.172e^-4	0.863	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15528171	3L_15528171_SNP [dm3] 3L_15535071_SNP [dm6]	A	T	3.173e^-4	0.863	UPSTREAM CrebA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	21408118	3R_21408118_SNP [dm3] 3R_25582396_SNP [dm6]	G	A	3.174e^-4	0.863	INTRON msi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16809914	2R_16809914_SNP [dm3] 2R_20922409_SNP [dm6]	A	T	3.174e^-4	0.863	INTRON Rx	TF binding site mE1_TFBS_chinmo
3R	7804363	3R_7804363_SNP [dm3] 3R_11978641_SNP [dm6]	C	A	3.177e^-4	0.863	NON_SYNONYMOUS_CODING CG18547 UPSTREAM CR44135	TF binding site mE1_TFBS_cad
X	20551923	X_20551923_SNP [dm3] X_20680896_SNP [dm6]	G	T	3.177e^-4	0.863	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	15699384	2R_15699384_SNP [dm3] 2R_19811879_SNP [dm6]	G	A	3.194e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5906987	2L_5906987_SNP [dm3] 2L_5906987_SNP [dm6]	G	C	3.195e^-4	0.863	UPSTREAM bchs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	14800457	X_14800457_SNP [dm3] X_14906424_SNP [dm6]	T	C	3.207e^-4	0.863	UTR_3_PRIME CG9509 UPSTREAM CG9512 INTRON Flo2	TF binding site mE1_TFBS_HSA
2L	18734830	2L_18734830_SNP [dm3] 2L_18734830_SNP [dm6]	G	A	3.222e^-4	0.863	UPSTREAM CR44769 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
X	15601243	X_15601243_SNP [dm3] X_15707210_SNP [dm6]	T	C	3.222e^-4	0.863	SYNONYMOUS_CODING CG9281	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3395069	3L_3395069_SNP [dm3] 3L_3395069_SNP [dm6]	A	G	3.232e^-4	0.863	DOWNSTREAM CR45737 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	18412876	3R_18412876_SNP [dm3] 3R_22587154_SNP [dm6]	G	C	3.232e^-4	0.863	UPSTREAM btn & 1 other DOWNSTREAM CG6937 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7532332	2R_7532332_SNP [dm3] 2R_11644827_SNP [dm6]	A	T	3.243e^-4	0.863	INTRON CG9003	TF binding site BDTNP1_TFBS_dl
3L	3644453	3L_3644453_SNP [dm3] 3L_3644453_SNP [dm6]	G	C	3.244e^-4	0.863	INTRON dar1	TF binding site mE1_TFBS_cad
3R	12254606	3R_12254606_SNP [dm3] 3R_16428884_SNP [dm6]	G	A	3.249e^-4	0.863	EXON CR45631	regulatory region REDfly_CRMs
3R	1696894	3R_1696894_SNP [dm3] 3R_5871172_SNP [dm6]	T	G	3.249e^-4	0.863	INTRON CG34113
X	17113521	X_17113521_DEL [dm3] X_17219488_DEL [dm6]	TAAAGTTAACAT...	T	3.252e^-4	0.863	UTR_3_PRIME CG12998 DOWNSTREAM CG12998
X	559524	X_559524_SNP [dm3] X_665491_SNP [dm6]	A	G	3.252e^-4	0.863	INTERGENIC	transposable element FlyBase
3R	21543465	3R_21543465_SNP [dm3] 3R_25717743_SNP [dm6]	A	G	3.256e^-4	0.863	INTRON LpR2
3R	16324107	3R_16324107_SNP [dm3] 3R_20498385_SNP [dm6]	C	T	3.258e^-4	0.863	INTERGENIC
X	8826917	X_8826917_SNP [dm3] X_8932884_SNP [dm6]	C	T	3.259e^-4	0.863	INTRON rdgA
2L	7522384	2L_7522384_SNP [dm3] 2L_7522384_SNP [dm6]	G	A	3.259e^-4	0.863	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	22975194	3R_22975194_SNP [dm3] 3R_27149472_SNP [dm6]	T	A	3.265e^-4	0.863	INTRON CG6051	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	1709233	3R_1709233_DEL [dm3] 3R_5883511_DEL [dm6]	CC	C	3.267e^-4	0.863	INTRON CG34113
3L	13981962	3L_13981962_INS [dm3] 3L_13988862_INS [dm6]	G	GCAATTTTAAG...	3.267e^-4	0.863	DOWNSTREAM CG9040 INTRON CG17364	insulator Insulator_Class_II.mE01
2L	11787526	2L_11787526_SNP [dm3] 2L_11787526_SNP [dm6]	A	T	3.272e^-4	0.863	UPSTREAM CG14931 INTERGENIC
3R	11468700	3R_11468700_SNP [dm3] 3R_15642978_SNP [dm6]	C	T	3.278e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	517732	X_517732_SNP [dm3] X_623699_SNP [dm6]	G	T	3.280e^-4	0.863	SYNONYMOUS_CODING CG13369 DOWNSTREAM mod_r_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	3539427	X_3539427_DEL [dm3] X_3645394_DEL [dm6]	AG	A	3.281e^-4	0.863	UTR_5_PRIME AstA-R1
X	7002908	X_7002908_SNP [dm3] X_7108875_SNP [dm6]	T	C	3.287e^-4	0.863	SYNONYMOUS_CODING fz4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	18834580	3R_18834580_INS [dm3] 3R_23008858_INS [dm6]	A	AA	3.287e^-4	0.863	INTRON CG34375
X	8434888	X_8434888_SNP [dm3] X_8540855_SNP [dm6]	G	C	3.290e^-4	0.863	INTRON Nrg
3L	8574339	3L_8574339_DEL [dm3] 3L_8581239_DEL [dm6]	TTAG	T	3.290e^-4	0.863	INTRON CG43078
3R	1756259	3R_1756259_SNP [dm3] 3R_5930537_SNP [dm6]	C	T	3.296e^-4	0.863	INTRON CG34113
3R	10126684	3R_10126684_SNP [dm3] 3R_14300962_SNP [dm6]	T	C	3.298e^-4	0.863	SYNONYMOUS_CODING CG12207	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	18720942	3R_18720942_SNP [dm3] 3R_22895220_SNP [dm6]	G	A	3.310e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19501468	2L_19501468_SNP [dm3] 2L_19501468_SNP [dm6]	C	T	3.342e^-4	0.863	NON_SYNONYMOUS_CODING Top3alpha DOWNSTREAM CG10188
2L	14521227	2L_14521227_SNP [dm3] 2L_14521227_SNP [dm6]	G	A	3.357e^-4	0.863	INTERGENIC
X	15629760	X_15629760_SNP [dm3] X_15735727_SNP [dm6]	T	A	3.362e^-4	0.863	UTR_3_PRIME l_1_G0136 DOWNSTREAM Arp6
X	3719833	X_3719833_SNP [dm3] X_3825800_SNP [dm6]	T	C	3.364e^-4	0.863	INTRON ec
3R	23269845	3R_23269845_SNP [dm3] 3R_27444123_SNP [dm6]	T	G	3.364e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	563805	X_563805_SNP [dm3] X_669772_SNP [dm6]	G	T	3.372e^-4	0.863	INTERGENIC
2L	5825883	2L_5825883_INS [dm3] 2L_5825883_INS [dm6]	T	TT	3.380e^-4	0.863	INTRON TrissinR
X	15104212	X_15104212_SNP [dm3] X_15210179_SNP [dm6]	C	T	3.385e^-4	0.863	UPSTREAM CG5662 INTERGENIC
3R	12951951	3R_12951951_SNP [dm3] 3R_17126229_SNP [dm6]	A	C	3.387e^-4	0.863	SYNONYMOUS_CODING CG17477 UPSTREAM cher & 1 other DOWNSTREAM CR44238	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2182047	3L_2182047_SNP [dm3] 3L_2182047_SNP [dm6]	T	C	3.394e^-4	0.863	INTERGENIC
2L	14857949	2L_14857949_SNP [dm3] 2L_14857949_SNP [dm6]	A	G	3.395e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	7872565	3R_7872565_SNP [dm3] 3R_12046843_SNP [dm6]	G	A	3.396e^-4	0.863	INTERGENIC
2L	6698838	2L_6698838_SNP [dm3] 2L_6698838_SNP [dm6]	T	C	3.396e^-4	0.863	INTRON Tsp
2L	9089761	2L_9089761_SNP [dm3] 2L_9089761_SNP [dm6]	G	A	3.404e^-4	0.863	DOWNSTREAM Toll-4 INTERGENIC
2R	16691767	2R_16691767_SNP [dm3] 2R_20804262_SNP [dm6]	G	C	3.417e^-4	0.863	INTERGENIC
2R	15526539	2R_15526539_SNP [dm3] 2R_19639034_SNP [dm6]	T	C	3.419e^-4	0.863	DOWNSTREAM CG43277 INTERGENIC
2L	18755921	2L_18755921_SNP [dm3] 2L_18755921_SNP [dm6]	T	G	3.420e^-4	0.863	INTERGENIC
2L	18755922	2L_18755922_SNP [dm3] 2L_18755922_SNP [dm6]	G	T	3.420e^-4	0.863	INTERGENIC
3L	15090803	3L_15090803_SNP [dm3] 3L_15097703_SNP [dm6]	A	C	3.422e^-4	0.863	UPSTREAM CTPsyn DOWNSTREAM CR43973 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	15476706	3L_15476706_SNP [dm3] 3L_15483606_SNP [dm6]	A	T	3.423e^-4	0.863	DOWNSTREAM Ran-like INTERGENIC
2R	7504317	2R_7504317_SNP [dm3] 2R_11616812_SNP [dm6]	C	T	3.428e^-4	0.863	UPSTREAM tou DOWNSTREAM Egm & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb mE1_TFBS_Trl
3R	12954996	3R_12954996_SNP [dm3] 3R_17129274_SNP [dm6]	C	A	3.429e^-4	0.863	DOWNSTREAM CG17475 & 1 other INTERGENIC
2R	19524364	2R_19524364_DEL [dm3] 2R_23636841_DEL [dm6]	ATGTTCGA	A	3.439e^-4	0.863	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10578511	2R_10578511_SNP [dm3] 2R_14691006_SNP [dm6]	A	T	3.442e^-4	0.863	INTRON mspo
3R	26071101	3R_26071101_SNP [dm3] 3R_30245379_SNP [dm6]	G	T	3.462e^-4	0.863	INTRON CG9733
2L	10414865	2L_10414865_SNP [dm3] 2L_10414865_SNP [dm6]	T	A	3.463e^-4	0.863	SYNONYMOUS_CODING Klp31E	TF binding site mE1_TFBS_HSA
3R	21539433	3R_21539433_SNP [dm3] 3R_25713711_SNP [dm6]	C	T	3.465e^-4	0.863	INTRON LpR2
2R	12602920	2R_12602920_SNP [dm3] 2R_16715415_SNP [dm6]	C	T	3.470e^-4	0.863	INTRON CG30463
2L	15347973	2L_15347973_SNP [dm3] 2L_15347973_SNP [dm6]	T	A	3.482e^-4	0.863	INTERGENIC
2R	10630841	2R_10630841_SNP [dm3] 2R_14743336_SNP [dm6]	T	C	3.484e^-4	0.863	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	22177540	2L_22177540_SNP [dm3] 2L_22177540_SNP [dm6]	C	G	3.484e^-4	0.863	INTRON CG3635	transposable element FlyBase
2L	8766177	2L_8766177_SNP [dm3] 2L_8766177_SNP [dm6]	C	T	3.496e^-4	0.863	SYNONYMOUS_CODING CG9463
2L	18734826	2L_18734826_DEL [dm3] 2L_18734826_DEL [dm6]	AC	G	3.497e^-4	0.863	UPSTREAM CR44769 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	21599500	3R_21599500_SNP [dm3] 3R_25773778_SNP [dm6]	T	C	3.497e^-4	0.863	NON_SYNONYMOUS_CODING CG17198 UTR_3_PRIME CG17197
2R	11358173	2R_11358173_SNP [dm3] 2R_15470668_SNP [dm6]	A	T	3.514e^-4	0.863	UTR_3_PRIME CG43729
X	1091294	X_1091294_SNP [dm3] X_1197261_SNP [dm6]	G	A	3.520e^-4	0.863	DOWNSTREAM CG11380 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5741687	2L_5741687_SNP [dm3] 2L_5741687_SNP [dm6]	C	G	3.523e^-4	0.863	UPSTREAM CG11147 INTRON CG11030	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22813274	3R_22813274_SNP [dm3] 3R_26987552_SNP [dm6]	C	T	3.529e^-4	0.863	UTR_5_PRIME CG31075 INTRON CG31075
X	15629823	X_15629823_SNP [dm3] X_15735790_SNP [dm6]	G	C	3.530e^-4	0.863	UTR_3_PRIME Arp6 DOWNSTREAM l_1_G0136
2L	5825724	2L_5825724_SNP [dm3] 2L_5825724_SNP [dm6]	T	C	3.531e^-4	0.863	INTRON TrissinR
X	6215752	X_6215752_SNP [dm3] X_6321719_SNP [dm6]	A	G	3.534e^-4	0.863	INTRON CG15894
X	6998754	X_6998754_SNP [dm3] X_7104721_SNP [dm6]	T	C	3.545e^-4	0.863	UPSTREAM CG8300 & 1 other INTERGENIC
2L	18863813	2L_18863813_SNP [dm3] 2L_18863813_SNP [dm6]	A	G	3.547e^-4	0.863	INTRON tup
3R	25070380	3R_25070380_SNP [dm3] 3R_29244658_SNP [dm6]	T	C	3.549e^-4	0.863	UTR_5_PRIME CG31445 UPSTREAM CG31445 DOWNSTREAM SP1029
2L	7111441	2L_7111441_SNP [dm3] 2L_7111441_SNP [dm6]	T	G	3.553e^-4	0.863	INTRON Pvf3
2L	11828748	2L_11828748_SNP [dm3] 2L_11828748_SNP [dm6]	A	G	3.555e^-4	0.863	SYNONYMOUS_CODING esc INTRON Pde1c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7504239	2R_7504239_INS [dm3] 2R_11616734_INS [dm6]	T	TC	3.574e^-4	0.863	UPSTREAM tou DOWNSTREAM Egm & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb mE1_TFBS_Trl
2L	20113927	2L_20113927_SNP [dm3] 2L_20113927_SNP [dm6]	A	G	3.574e^-4	0.863	INTERGENIC
X	17304530	X_17304530_SNP [dm3] X_17410497_SNP [dm6]	C	T	3.576e^-4	0.863	INTERGENIC
2R	11532804	2R_11532804_SNP [dm3] 2R_15645299_SNP [dm6]	G	T	3.581e^-4	0.863	INTRON CG42524	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	13712182	X_13712182_DEL [dm3] X_13818149_DEL [dm6]	ATGTATG	A	3.581e^-4	0.863	INTRON Clic
2L	16177629	2L_16177629_SNP [dm3] 2L_16177629_SNP [dm6]	A	C	3.593e^-4	0.863	INTRON Ca-alpha1D
2R	13766342	2R_13766342_SNP [dm3] 2R_17878837_SNP [dm6]	T	A	3.604e^-4	0.863	NON_SYNONYMOUS_CODING CG30325 INTRON Elk
3R	22488259	3R_22488259_SNP [dm3] 3R_26662537_SNP [dm6]	A	T	3.611e^-4	0.863	INTRON beat-VII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10674892	2R_10674892_SNP [dm3] 2R_14787387_SNP [dm6]	G	A	3.620e^-4	0.863	INTRON kn
X	17114011	X_17114011_SNP [dm3] X_17219978_SNP [dm6]	T	G	3.623e^-4	0.863	DOWNSTREAM CG12998 INTERGENIC
3L	16237779	3L_16237779_SNP [dm3] 3L_16244679_SNP [dm6]	A	T	3.626e^-4	0.863	INTERGENIC
3L	16237798	3L_16237798_SNP [dm3] 3L_16244698_SNP [dm6]	T	G	3.626e^-4	0.863	INTERGENIC
2L	4685014	2L_4685014_SNP [dm3] 2L_4685014_SNP [dm6]	T	A	3.641e^-4	0.863	SYNONYMOUS_CODING CG11929 UPSTREAM Bsg25A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15789546	2L_15789546_SNP [dm3] 2L_15789546_SNP [dm6]	T	C	3.641e^-4	0.863	SYNONYMOUS_CODING CG18109
3L	4178234	3L_4178234_SNP [dm3] 3L_4178234_SNP [dm6]	G	T	3.646e^-4	0.863	UTR_5_PRIME Teh4 DOWNSTREAM Teh2 INTRON CG18675
3L	3953888	3L_3953888_SNP [dm3] 3L_3953888_SNP [dm6]	C	G	3.681e^-4	0.863	DOWNSTREAM CG12605 INTERGENIC
3R	9109435	3R_9109435_SNP [dm3] 3R_13283713_SNP [dm6]	G	A	3.684e^-4	0.863	SYNONYMOUS_CODING CG8630	TF binding site mE1_TFBS_cad
2L	6476089	2L_6476089_SNP [dm3] 2L_6476089_SNP [dm6]	C	T	3.697e^-4	0.863	INTRON CG9536	TF binding site BDTNP1_TFBS_dl
X	515344	X_515344_SNP [dm3] X_621311_SNP [dm6]	T	A	3.703e^-4	0.863	UPSTREAM mod_r_ & 1 other DOWNSTREAM CR45474 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	23358259	3R_23358259_DEL [dm3] 3R_27532537_DEL [dm6]	CCTCGCC	C	3.705e^-4	0.863		TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18593381	2L_18593381_SNP [dm3] 2L_18593381_SNP [dm6]	G	A	3.713e^-4	0.863	NON_SYNONYMOUS_CODING CG15160
2L	18756249	2L_18756249_SNP [dm3] 2L_18756249_SNP [dm6]	T	C	3.717e^-4	0.863	INTERGENIC
3R	9378473	3R_9378473_SNP [dm3] 3R_13552751_SNP [dm6]	A	T	3.721e^-4	0.863	INTERGENIC
3R	12955086	3R_12955086_SNP [dm3] 3R_17129364_SNP [dm6]	G	A	3.722e^-4	0.863	UTR_3_PRIME CG17475 DOWNSTREAM CG17475 & 1 other	TF binding site mE1_TFBS_cad
3R	10259847	3R_10259847_SNP [dm3] 3R_14434125_SNP [dm6]	G	A	3.726e^-4	0.863	INTRON cv-c
2L	15200269	2L_15200269_SNP [dm3] 2L_15200269_SNP [dm6]	C	A	3.727e^-4	0.863	UTR_5_PRIME CG4168
3R	25271510	3R_25271510_SNP [dm3] 3R_29445788_SNP [dm6]	C	T	3.731e^-4	0.863	INTRON Ptp99A
2L	5818701	2L_5818701_SNP [dm3] 2L_5818701_SNP [dm6]	T	C	3.732e^-4	0.863	UPSTREAM CG31644 INTERGENIC
X	6611198	X_6611198_SNP [dm3] X_6717165_SNP [dm6]	C	A	3.743e^-4	0.863	UTR_3_PRIME CG14441
3R	6297620	3R_6297620_SNP [dm3] 3R_10471898_SNP [dm6]	C	A	3.753e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	9365764	3L_9365764_SNP [dm3] 3L_9372664_SNP [dm6]	A	T	3.754e^-4	0.863	UPSTREAM Hsp67Bb & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	3624346	X_3624346_SNP [dm3] X_3730313_SNP [dm6]	T	C	3.759e^-4	0.863	INTRON tlk
X	559654	X_559654_SNP [dm3] X_665621_SNP [dm6]	T	A	3.763e^-4	0.863	INTERGENIC	transposable element FlyBase
2L	10414874	2L_10414874_SNP [dm3] 2L_10414874_SNP [dm6]	C	T	3.780e^-4	0.863	SYNONYMOUS_CODING Klp31E	TF binding site mE1_TFBS_HSA
X	16796468	X_16796468_SNP [dm3] X_16902435_SNP [dm6]	C	T	3.786e^-4	0.863	EXON CR44754
2R	7528120	2R_7528120_SNP [dm3] 2R_11640615_SNP [dm6]	C	T	3.787e^-4	0.863	UTR_5_PRIME CG9005 DOWNSTREAM CG9003	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	14163395	X_14163395_SNP [dm3] X_14269362_SNP [dm6]	C	T	3.787e^-4	0.863	SYNONYMOUS_CODING na
3R	9341885	3R_9341885_SNP [dm3] 3R_13516163_SNP [dm6]	G	A	3.790e^-4	0.863	INTERGENIC
X	17940302	X_17940302_DEL [dm3] X_18046269_DEL [dm6]	AT	A	3.798e^-4	0.863	INTRON Sh & 1 other	TF binding site mE1_TFBS_chinmo
3R	21712691	3R_21712691_SNP [dm3] 3R_25886969_SNP [dm6]	A	G	3.805e^-4	0.863	SYNONYMOUS_CODING SppL
2L	5840025	2L_5840025_SNP [dm3] 2L_5840025_SNP [dm6]	G	T	3.805e^-4	0.863	INTRON TrissinR
X	19011274	X_19011274_SNP [dm3] X_19117241_SNP [dm6]	T	G	3.819e^-4	0.863	INTERGENIC
3R	16522433	3R_16522433_SNP [dm3] 3R_20696711_SNP [dm6]	G	A	3.821e^-4	0.863	INTRON Oamb
3L	4510816	3L_4510816_SNP [dm3] 3L_4510816_SNP [dm6]	T	A	3.822e^-4	0.863	UTR_3_PRIME Tie
3R	12264870	3R_12264870_SNP [dm3] 3R_16439148_SNP [dm6]	C	G	3.829e^-4	0.863	SYNONYMOUS_CODING ema	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	18818924	X_18818924_SNP [dm3] X_18924891_SNP [dm6]	G	C	3.833e^-4	0.863	INTERGENIC
X	7000160	X_7000160_SNP [dm3] X_7106127_SNP [dm6]	C	G	3.859e^-4	0.863	UTR_3_PRIME CG8300 DOWNSTREAM fz4	TF binding site BDTNP1_TFBS_da
2L	19141118	2L_19141118_SNP [dm3] 2L_19141118_SNP [dm6]	T	A	3.862e^-4	0.863	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1662767	3L_1662767_SNP [dm3] 3L_1662767_SNP [dm6]	C	T	3.869e^-4	0.863	INTRON CG7971
3R	25952702	3R_25952702_SNP [dm3] 3R_30126980_SNP [dm6]	T	C	3.874e^-4	0.863	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4510234	3L_4510234_SNP [dm3] 3L_4510234_SNP [dm6]	C	T	3.875e^-4	0.863	DOWNSTREAM Tie INTERGENIC
X	8092856	X_8092856_SNP [dm3] X_8198823_SNP [dm6]	A	T	3.878e^-4	0.863	INTRON sdt
3L	17998494	3L_17998494_SNP [dm3] 3L_18005394_SNP [dm6]	A	G	3.886e^-4	0.863	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	708073	3L_708073_SNP [dm3] 3L_708073_SNP [dm6]	C	T	3.891e^-4	0.863	SPLICE_SITE_REGION CG13895 UTR_5_PRIME CG13895 DOWNSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	13722941	3L_13722941_SNP [dm3] 3L_13729841_SNP [dm6]	A	T	3.891e^-4	0.863	INTRON bru-3
X	4424198	X_4424198_SNP [dm3] X_4530165_SNP [dm6]	G	C	3.897e^-4	0.863	UPSTREAM CG3556 INTRON CR32773	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	4167727	3L_4167727_SNP [dm3] 3L_4167727_SNP [dm6]	G	C	3.901e^-4	0.863	UPSTREAM mas DOWNSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	8024119	2L_8024119_SNP [dm3] 2L_8024119_SNP [dm6]	C	G	3.911e^-4	0.863	INTRON Tg	regulatory region REDfly_CRMs
3L	5120291	3L_5120291_DEL [dm3] 3L_5127191_DEL [dm6]	TGT	T	3.916e^-4	0.863	INTERGENIC
2R	16693049	2R_16693049_SNP [dm3] 2R_20805544_SNP [dm6]	T	C	3.919e^-4	0.863	INTERGENIC
3L	16237776	3L_16237776_SNP [dm3] 3L_16244676_SNP [dm6]	C	T	3.925e^-4	0.863	INTERGENIC
3L	15703886	3L_15703886_SNP [dm3] 3L_15710786_SNP [dm6]	T	C	3.931e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18991159	2L_18991159_SNP [dm3] 2L_18991159_SNP [dm6]	T	G	3.934e^-4	0.863	NON_SYNONYMOUS_CODING CG15169 UPSTREAM CG15170
3R	25064772	3R_25064772_SNP [dm3] 3R_29239050_SNP [dm6]	A	G	3.940e^-4	0.863	SYNONYMOUS_CODING CG31427 UTR_3_PRIME CG31427 UPSTREAM CG11951
X	6351608	X_6351608_DEL [dm3] X_6457575_DEL [dm6]	CC	C	3.946e^-4	0.863	INTRON CG42340
2L	18762473	2L_18762473_SNP [dm3] 2L_18762473_SNP [dm6]	G	T	3.961e^-4	0.863	DOWNSTREAM ham INTERGENIC
3R	5221840	3R_5221840_SNP [dm3] 3R_9396118_SNP [dm6]	T	C	3.966e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18412899	3R_18412899_SNP [dm3] 3R_22587177_SNP [dm6]	A	G	3.969e^-4	0.863	UPSTREAM btn & 1 other DOWNSTREAM CG6937 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2086367	2L_2086367_SNP [dm3] 2L_2086367_SNP [dm6]	G	C	3.971e^-4	0.863	INTRON dpr3
2R	15171469	2R_15171469_SNP [dm3] 2R_19283964_SNP [dm6]	G	T	3.976e^-4	0.863	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13828288	2L_13828288_SNP [dm3] 2L_13828288_SNP [dm6]	G	A	3.984e^-4	0.863	SYNONYMOUS_CODING Arpc1 UPSTREAM tam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	7736207	3R_7736207_SNP [dm3] 3R_11910485_SNP [dm6]	T	A	3.994e^-4	0.863	INTRON Cad87A	TF binding site mE1_TFBS_HSA
X	3539477	X_3539477_SNP [dm3] X_3645444_SNP [dm6]	T	A	4.000e^-4	0.863	UTR_5_PRIME AstA-R1
2L	17348168	2L_17348168_SNP [dm3] 2L_17348168_SNP [dm6]	T	C	4.002e^-4	0.863	INTERGENIC
3R	7870290	3R_7870290_SNP [dm3] 3R_12044568_SNP [dm6]	A	T	4.003e^-4	0.863	INTERGENIC
3R	7871953	3R_7871953_SNP [dm3] 3R_12046231_SNP [dm6]	A	G	4.003e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7880771	3R_7880771_SNP [dm3] 3R_12055049_SNP [dm6]	C	G	4.003e^-4	0.863	INTERGENIC
3R	11751072	3R_11751072_SNP [dm3] 3R_15925350_SNP [dm6]	A	G	4.011e^-4	0.863	UPSTREAM CG34276 INTRON CG4221
2R	4219792	2R_4219792_SNP [dm3] 2R_8332287_SNP [dm6]	T	C	4.019e^-4	0.863	INTRON pdm3
3L	4178215	3L_4178215_SNP [dm3] 3L_4178215_SNP [dm6]	G	A	4.025e^-4	0.863	UTR_5_PRIME Teh4 DOWNSTREAM Teh2 INTRON CG18675
3L	15489636	3L_15489636_SNP [dm3] 3L_15496536_SNP [dm6]	C	T	4.026e^-4	0.863	UPSTREAM CG12355 & 1 other INTERGENIC
3R	19060813	3R_19060813_DEL [dm3] 3R_23235091_DEL [dm6]	TT	T	4.032e^-4	0.863	INTRON CG4467
3L	11666993	3L_11666993_SNP [dm3] 3L_11673893_SNP [dm6]	T	A	4.036e^-4	0.863	INTRON CG32085
X	16665364	X_16665364_SNP [dm3] X_16771331_SNP [dm6]	G	T	4.066e^-4	0.863	INTRON if	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	19772322	3R_19772322_SNP [dm3] 3R_23946600_SNP [dm6]	A	G	4.067e^-4	0.863	INTRON CG12268
3R	23390699	3R_23390699_INS [dm3] 3R_27564977_INS [dm6]	A	AATATGTTTAATAT...	4.074e^-4	0.863	UTR_3_PRIME wdb DOWNSTREAM wdb
2L	9323493	2L_9323493_SNP [dm3] 2L_9323493_SNP [dm6]	A	T	4.085e^-4	0.863	INTERGENIC
2L	17098302	2L_17098302_SNP [dm3] 2L_17098302_SNP [dm6]	G	A	4.085e^-4	0.863	INTERGENIC
X	563753	X_563753_SNP [dm3] X_669720_SNP [dm6]	G	A	4.085e^-4	0.863	INTERGENIC
2R	10496688	2R_10496688_SNP [dm3] 2R_14609183_SNP [dm6]	A	G	4.089e^-4	0.863	NON_SYNONYMOUS_CODING Su_var_2-HP2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18825671	3R_18825671_SNP [dm3] 3R_22999949_SNP [dm6]	T	C	4.091e^-4	0.863	DOWNSTREAM CG34375 INTERGENIC
3R	16522461	3R_16522461_SNP [dm3] 3R_20696739_SNP [dm6]	C	T	4.099e^-4	0.863	INTRON Oamb
2L	13414816	2L_13414816_SNP [dm3] 2L_13414816_SNP [dm6]	T	C	4.108e^-4	0.863	UPSTREAM CG42784 & 2 others INTERGENIC
2L	19163532	2L_19163532_SNP [dm3] 2L_19163532_SNP [dm6]	C	T	4.114e^-4	0.863	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18734898	2L_18734898_SNP [dm3] 2L_18734898_SNP [dm6]	T	G	4.121e^-4	0.863	UPSTREAM CR44769 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	9365788	3L_9365788_SNP [dm3] 3L_9372688_SNP [dm6]	A	G	4.130e^-4	0.863	UPSTREAM Hsp67Bb & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12603007	2R_12603007_SNP [dm3] 2R_16715502_SNP [dm6]	A	G	4.148e^-4	0.863	INTRON CG30463
X	18691565	X_18691565_DEL [dm3] X_18797532_DEL [dm6]	AA	A	4.156e^-4	0.863	UTR_5_PRIME bnb UPSTREAM bnb INTRON Pk17E & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10838522	3L_10838522_SNP [dm3] 3L_10845422_SNP [dm6]	C	A	4.159e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10192570	3R_10192570_DEL [dm3] 3R_14366848_DEL [dm6]	ATTTTACATA	A	4.160e^-4	0.863	INTRON NK7.1
3R	18824638	3R_18824638_SNP [dm3] 3R_22998916_SNP [dm6]	C	T	4.164e^-4	0.863	UPSTREAM Nha2 INTERGENIC
X	17114009	X_17114009_SNP [dm3] X_17219976_SNP [dm6]	A	G	4.173e^-4	0.863	DOWNSTREAM CG12998 INTERGENIC
3L	1662360	3L_1662360_SNP [dm3] 3L_1662360_SNP [dm6]	T	A	4.176e^-4	0.863	SYNONYMOUS_CODING CG7971 INTRON CG7971	TF binding site mE1_TFBS_chinmo
3R	22883244	3R_22883244_SNP [dm3] 3R_27057522_SNP [dm6]	A	T	4.178e^-4	0.863	DOWNSTREAM Nep5 & 1 other INTRON RYa-R
3R	26870794	3R_26870794_SNP [dm3] 3R_31045072_SNP [dm6]	A	G	4.181e^-4	0.863	SYNONYMOUS_CODING CG33920 INTRON CanA1
2L	13414822	2L_13414822_SNP [dm3] 2L_13414822_SNP [dm6]	A	T	4.187e^-4	0.863	UPSTREAM CG42784 & 2 others INTERGENIC
3L	8574313	3L_8574313_SNP [dm3] 3L_8581213_SNP [dm6]	A	C	4.189e^-4	0.863	INTRON CG43078
X	5547216	X_5547216_SNP [dm3] X_5653183_SNP [dm6]	A	T	4.189e^-4	0.863	UTR_3_PRIME CG42265
X	5547220	X_5547220_SNP [dm3] X_5653187_SNP [dm6]	T	G	4.189e^-4	0.863	UTR_3_PRIME CG42265
X	5547240	X_5547240_SNP [dm3] X_5653207_SNP [dm6]	C	A	4.189e^-4	0.863	UTR_3_PRIME CG42265
X	1091941	X_1091941_SNP [dm3] X_1197908_SNP [dm6]	A	C	4.190e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12698825	2L_12698825_SNP [dm3] 2L_12698825_SNP [dm6]	A	T	4.192e^-4	0.863	UTR_3_PRIME PICK1 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7876476	3R_7876476_SNP [dm3] 3R_12050754_SNP [dm6]	G	A	4.194e^-4	0.863	INTERGENIC
3R	21646017	3R_21646017_SNP [dm3] 3R_25820295_SNP [dm6]	T	A	4.209e^-4	0.863	INTERGENIC
2L	19164195	2L_19164195_SNP [dm3] 2L_19164195_SNP [dm6]	C	A	4.218e^-4	0.863	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1096537	3L_1096537_SNP [dm3] 3L_1096537_SNP [dm6]	A	T	4.237e^-4	0.863	INTRON bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	4178141	3L_4178141_SNP [dm3] 3L_4178141_SNP [dm6]	A	T	4.238e^-4	0.863	UTR_5_PRIME Teh4 DOWNSTREAM Teh2 INTRON CG18675
2R	15974286	2R_15974286_SNP [dm3] 2R_20086781_SNP [dm6]	A	T	4.240e^-4	0.863	DOWNSTREAM CR44632 INTERGENIC
3L	7785062	3L_7785062_SNP [dm3] 3L_7791962_SNP [dm6]	A	G	4.241e^-4	0.863	INTRON CG32369
3R	19360574	3R_19360574_SNP [dm3] 3R_23534852_SNP [dm6]	T	C	4.243e^-4	0.863	UPSTREAM CG10170 DOWNSTREAM CG16732 INTERGENIC
2L	9505295	2L_9505295_SNP [dm3] 2L_9505295_SNP [dm6]	G	C	4.245e^-4	0.863	INTRON CG33298
3R	19042958	3R_19042958_SNP [dm3] 3R_23217236_SNP [dm6]	C	G	4.256e^-4	0.863	INTRON cnc
3R	12951938	3R_12951938_SNP [dm3] 3R_17126216_SNP [dm6]	T	C	4.291e^-4	0.863	NON_SYNONYMOUS_CODING CG17477 UPSTREAM cher & 1 other DOWNSTREAM CR44238	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7820396	3R_7820396_SNP [dm3] 3R_11994674_SNP [dm6]	T	C	4.303e^-4	0.863	UTR_3_PRIME Tk
2R	10671669	2R_10671669_SNP [dm3] 2R_14784164_SNP [dm6]	G	A	4.315e^-4	0.863	INTRON kn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	4637134	3R_4637134_SNP [dm3] 3R_8811412_SNP [dm6]	C	T	4.315e^-4	0.863	INTRON CG9837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19360957	3R_19360957_SNP [dm3] 3R_23535235_SNP [dm6]	C	T	4.317e^-4	0.863	SYNONYMOUS_CODING CG16732 UPSTREAM CG10170
2R	12603030	2R_12603030_SNP [dm3] 2R_16715525_SNP [dm6]	A	T	4.335e^-4	0.863	INTRON CG30463
2R	13545576	2R_13545576_SNP [dm3] 2R_17658071_SNP [dm6]	A	G	4.347e^-4	0.863	INTRON CCHa1-R
3R	22814498	3R_22814498_SNP [dm3] 3R_26988776_SNP [dm6]	G	T	4.349e^-4	0.863	UPSTREAM CG31075 DOWNSTREAM CG31076 INTERGENIC
X	13283381	X_13283381_SNP [dm3] X_13389348_SNP [dm6]	T	A	4.349e^-4	0.863	DOWNSTREAM CG1662 & 1 other INTERGENIC
2R	12603032	2R_12603032_SNP [dm3] 2R_16715527_SNP [dm6]	C	A	4.358e^-4	0.863	INTRON CG30463
3L	15703557	3L_15703557_SNP [dm3] 3L_15710457_SNP [dm6]	G	A	4.364e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D
3R	18825756	3R_18825756_SNP [dm3] 3R_23000034_SNP [dm6]	T	A	4.364e^-4	0.863	DOWNSTREAM CG34375 INTERGENIC
X	3538790	X_3538790_SNP [dm3] X_3644757_SNP [dm6]	C	T	4.365e^-4	0.863	INTRON AstA-R1
3R	5918442	3R_5918442_DEL [dm3] 3R_10092720_DEL [dm6]	ACGCTAATAAT...	A	4.374e^-4	0.863	INTERGENIC
3R	22882090	3R_22882090_SNP [dm3] 3R_27056368_SNP [dm6]	A	G	4.384e^-4	0.863	INTRON RYa-R	TF binding site mE1_TFBS_inv
3L	7083564	3L_7083564_SNP [dm3] 3L_7090464_SNP [dm6]	T	C	4.386e^-4	0.863	INTERGENIC
3R	9710100	3R_9710100_INS [dm3] 3R_13884378_INS [dm6]	T	TT	4.389e^-4	0.863	INTERGENIC
3L	849013	3L_849013_SNP [dm3] 3L_849013_SNP [dm6]	C	T	4.391e^-4	0.863	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad
3R	9346465	3R_9346465_SNP [dm3] 3R_13520743_SNP [dm6]	T	C	4.403e^-4	0.863	INTERGENIC
X	687475	X_687475_SNP [dm3] X_793442_SNP [dm6]	C	T	4.406e^-4	0.863	UTR_5_PRIME CG16989	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15283548	2R_15283548_SNP [dm3] 2R_19396043_SNP [dm6]	G	A	4.406e^-4	0.863	UPSTREAM SdhA DOWNSTREAM cer & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	3211542	2L_3211542_SNP [dm3] 2L_3211542_SNP [dm6]	C	T	4.407e^-4	0.863	DOWNSTREAM CR45336 INTERGENIC
2L	5906897	2L_5906897_SNP [dm3] 2L_5906897_SNP [dm6]	T	A	4.417e^-4	0.863	UPSTREAM bchs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	20552676	2L_20552676_SNP [dm3] 2L_20552676_SNP [dm6]	C	A	4.430e^-4	0.863	INTERGENIC
2L	18756251	2L_18756251_SNP [dm3] 2L_18756251_SNP [dm6]	C	T	4.434e^-4	0.863	INTERGENIC
2L	7801667	2L_7801667_SNP [dm3] 2L_7801667_SNP [dm6]	T	C	4.439e^-4	0.863	UTR_3_PRIME r2d2 DOWNSTREAM cdc14 & 1 other
2R	5130505	2R_5130505_SNP [dm3] 2R_9243000_SNP [dm6]	T	C	4.440e^-4	0.863	DOWNSTREAM Cyp4p1 INTRON hig & 1 other
X	13933494	X_13933494_SNP [dm3] X_14039461_SNP [dm6]	A	G	4.445e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13573356	2R_13573356_SNP [dm3] 2R_17685851_SNP [dm6]	C	G	4.447e^-4	0.863	NON_SYNONYMOUS_CODING CG42562 UPSTREAM HPS4 DOWNSTREAM CG42561 INTRON HPS4
3L	8600053	3L_8600053_SNP [dm3] 3L_8606953_SNP [dm6]	T	C	4.448e^-4	0.863	INTRON CG6282
X	6351580	X_6351580_SNP [dm3] X_6457547_SNP [dm6]	A	G	4.457e^-4	0.863	INTRON CG42340
X	559663	X_559663_SNP [dm3] X_665630_SNP [dm6]	A	G	4.461e^-4	0.863	INTERGENIC	transposable element FlyBase
X	14163280	X_14163280_SNP [dm3] X_14269247_SNP [dm6]	T	A	4.466e^-4	0.863	SPLICE_SITE_REGION na INTRON na
3L	15489646	3L_15489646_SNP [dm3] 3L_15496546_SNP [dm6]	T	A	4.475e^-4	0.863	UPSTREAM CG12355 & 1 other INTERGENIC
2L	2838718	2L_2838718_SNP [dm3] 2L_2838718_SNP [dm6]	G	A	4.480e^-4	0.863	SYNONYMOUS_CODING Cpr23B UPSTREAM CG3119	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2456236	2R_2456236_SNP [dm3] 2R_6568731_SNP [dm6]	C	T	4.482e^-4	0.863	INTRON jing	TF binding site BDTNP1_TFBS_twi
X	741425	X_741425_SNP [dm3] X_847392_SNP [dm6]	T	C	4.486e^-4	0.863	UPSTREAM CG3713 INTRON CG43867
2R	8228653	2R_8228653_SNP [dm3] 2R_12341148_SNP [dm6]	C	A	4.508e^-4	0.863	SPLICE_SITE_REGION CG8839 INTRON CG8839	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8228704	2R_8228704_SNP [dm3] 2R_12341199_SNP [dm6]	G	A	4.508e^-4	0.863	INTRON CG8839	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22814471	3R_22814471_SNP [dm3] 3R_26988749_SNP [dm6]	A	T	4.516e^-4	0.863	UPSTREAM CG31075 DOWNSTREAM CG31076 INTERGENIC
3R	22814473	3R_22814473_SNP [dm3] 3R_26988751_SNP [dm6]	T	A	4.516e^-4	0.863	UPSTREAM CG31075 DOWNSTREAM CG31076 INTERGENIC
2L	2928942	2L_2928942_SNP [dm3] 2L_2928942_SNP [dm6]	G	C	4.519e^-4	0.863	INTRON lilli
3L	15090862	3L_15090862_DEL [dm3] 3L_15097762_DEL [dm6]	TCT	T	4.519e^-4	0.863	UPSTREAM CTPsyn DOWNSTREAM CR43973 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14930608	2R_14930608_DEL [dm3] 2R_19043103_DEL [dm6]	TGCT	T	4.521e^-4	0.863	INTERGENIC
X	12832491	X_12832491_SNP [dm3] X_12938458_SNP [dm6]	T	A	4.528e^-4	0.863	UPSTREAM fne INTRON fne	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12144725	2L_12144725_SNP [dm3] 2L_12144725_SNP [dm6]	T	A	4.535e^-4	0.863	UPSTREAM CG31760 INTRON CG31760
2L	5825404	2L_5825404_SNP [dm3] 2L_5825404_SNP [dm6]	C	G	4.536e^-4	0.863	INTRON TrissinR
2L	11480453	2L_11480453_SNP [dm3] 2L_11480453_SNP [dm6]	A	T	4.546e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26418248	3R_26418248_INS [dm3] 3R_30592526_INS [dm6]	A	ACC	4.546e^-4	0.863	DOWNSTREAM CG2246 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	577640	3L_577640_SNP [dm3] 3L_577640_SNP [dm6]	A	G	4.564e^-4	0.863	UTR_3_PRIME hipk
3L	843245	3L_843245_SNP [dm3] 3L_843245_SNP [dm6]	C	T	4.568e^-4	0.863	SYNONYMOUS_CODING Gr61a UTR_3_PRIME Gr61a UPSTREAM CG13889
2L	13716676	2L_13716676_SNP [dm3] 2L_13716676_SNP [dm6]	T	A	4.571e^-4	0.863	INTRON CG31814
3R	20530729	3R_20530729_SNP [dm3] 3R_24705007_SNP [dm6]	C	A	4.573e^-4	0.863	INTRON slo
3R	6006969	3R_6006969_SNP [dm3] 3R_10181247_SNP [dm6]	C	T	4.575e^-4	0.863	INTRON CG12814
3R	9378489	3R_9378489_DEL [dm3] 3R_13552767_DEL [dm6]	TTTGTTATT	T	4.580e^-4	0.863	INTERGENIC
2L	9258652	2L_9258652_SNP [dm3] 2L_9258652_SNP [dm6]	A	T	4.581e^-4	0.863	INTRON Ggamma30A
2L	6778488	2L_6778488_SNP [dm3] 2L_6778488_SNP [dm6]	A	T	4.587e^-4	0.863	DOWNSTREAM nrv1 & 1 other INTERGENIC
2R	16701797	2R_16701797_SNP [dm3] 2R_20814292_SNP [dm6]	T	C	4.588e^-4	0.863	INTERGENIC
2L	18732812	2L_18732812_SNP [dm3] 2L_18732812_SNP [dm6]	G	A	4.589e^-4	0.863	UPSTREAM CG10348 EXON CR44768	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	589655	X_589655_SNP [dm3] X_695622_SNP [dm6]	C	A	4.591e^-4	0.863	INTRON sdk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12960230	3R_12960230_SNP [dm3] 3R_17134508_SNP [dm6]	T	G	4.599e^-4	0.863	DOWNSTREAM CG31266 INTRON CG31267
2L	6187598	2L_6187598_SNP [dm3] 2L_6187598_SNP [dm6]	C	T	4.605e^-4	0.863	INTRON CG34380	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12253398	X_12253398_DEL [dm3] X_12359365_DEL [dm6]	GTTCTCCTTG	G	4.606e^-4	0.863	INTERGENIC
2L	19139022	2L_19139022_INS [dm3] 2L_19139022_INS [dm6]	C	CTCACACGCA	4.617e^-4	0.863	INTRON brat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
X	734547	X_734547_SNP [dm3] X_840514_SNP [dm6]	T	A	4.623e^-4	0.863	UTR_5_PRIME CG43867 INTRON CG43867	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14680721	2R_14680721_SNP [dm3] 2R_18793216_SNP [dm6]	G	A	4.623e^-4	0.863	SYNONYMOUS_CODING CG15080
3R	23643839	3R_23643839_SNP [dm3] 3R_27818117_SNP [dm6]	T	C	4.639e^-4	0.863	INTRON CG34353	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10599625	3R_10599625_SNP [dm3] 3R_14773903_SNP [dm6]	G	A	4.644e^-4	0.863	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11388898	2R_11388898_SNP [dm3] 2R_15501393_SNP [dm6]	G	A	4.644e^-4	0.863	NON_SYNONYMOUS_CODING Ir52a UPSTREAM Ir52b
2R	10672420	2R_10672420_SNP [dm3] 2R_14784915_SNP [dm6]	T	C	4.645e^-4	0.863	INTRON kn
3R	12526125	3R_12526125_SNP [dm3] 3R_16700403_SNP [dm6]	T	G	4.647e^-4	0.863	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16172123	3L_16172123_SNP [dm3] 3L_16179023_SNP [dm6]	A	T	4.660e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4510228	3L_4510228_DEL [dm3] 3L_4510228_DEL [dm6]	AA	A	4.662e^-4	0.863	DOWNSTREAM Tie INTERGENIC
3L	15932388	3L_15932388_DEL [dm3] 3L_15939288_DEL [dm6]	AT	A	4.667e^-4	0.863	INTRON Pka-C3
2L	14521189	2L_14521189_SNP [dm3] 2L_14521189_SNP [dm6]	G	A	4.669e^-4	0.863	INTERGENIC
2L	18872053	2L_18872053_SNP [dm3] 2L_18872053_SNP [dm6]	C	A	4.682e^-4	0.863	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21581946	3R_21581946_SNP [dm3] 3R_25756224_SNP [dm6]	C	T	4.683e^-4	0.863	INTRON LpR1
2R	10630724	2R_10630724_SNP [dm3] 2R_14743219_SNP [dm6]	C	A	4.689e^-4	0.863	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12317545	3R_12317545_SNP [dm3] 3R_16491823_SNP [dm6]	G	A	4.690e^-4	0.863	INTRON Cad89D
3L	15476715	3L_15476715_SNP [dm3] 3L_15483615_SNP [dm6]	C	T	4.695e^-4	0.863	DOWNSTREAM Ran-like INTERGENIC
3R	15774750	3R_15774750_SNP [dm3] 3R_19949028_SNP [dm6]	T	A	4.697e^-4	0.863	DOWNSTREAM CG4783 INTRON Hs6st
3R	20520954	3R_20520954_SNP [dm3] 3R_24695232_SNP [dm6]	C	T	4.708e^-4	0.863	INTRON slo
2R	12641224	2R_12641224_SNP [dm3] 2R_16753719_SNP [dm6]	A	T	4.717e^-4	0.863	UPSTREAM CG34189 INTRON unc-104
2L	1846012	2L_1846012_SNP [dm3] 2L_1846012_SNP [dm6]	T	C	4.718e^-4	0.863	INTRON wry
2L	19141527	2L_19141527_SNP [dm3] 2L_19141527_SNP [dm6]	G	T	4.721e^-4	0.863	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8566193	3R_8566193_SNP [dm3] 3R_12740471_SNP [dm6]	A	G	4.734e^-4	0.863	SYNONYMOUS_CODING CG5724
3R	5695673	3R_5695673_SNP [dm3] 3R_9869951_SNP [dm6]	C	G	4.736e^-4	0.863	INTERGENIC
2L	22177936	2L_22177936_SNP [dm3] 2L_22177936_SNP [dm6]	T	G	4.737e^-4	0.863	INTRON CG3635	transposable element FlyBase
2R	12846090	2R_12846090_SNP [dm3] 2R_16958585_SNP [dm6]	G	A	4.738e^-4	0.863	SYNONYMOUS_CODING CG6665 DOWNSTREAM CG9010	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13733561	2R_13733561_SNP [dm3] 2R_17846056_SNP [dm6]	C	G	4.742e^-4	0.863	UPSTREAM olf186-M INTRON olf186-F	TF binding site mE1_TFBS_Trl
2L	13247102	2L_13247102_SNP [dm3] 2L_13247102_SNP [dm6]	A	T	4.743e^-4	0.863	INTRON CG16820	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8459450	3R_8459450_SNP [dm3] 3R_12633728_SNP [dm6]	C	A	4.754e^-4	0.863	SYNONYMOUS_CODING CG18530 DOWNSTREAM Not10
2L	19142535	2L_19142535_DEL [dm3] 2L_19142535_DEL [dm6]	TGATTGGCCTTTGTCGTTGT...	T	4.758e^-4	0.863	INTRON brat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3037993	3L_3037993_SNP [dm3] 3L_3037993_SNP [dm6]	T	A	4.759e^-4	0.863	UPSTREAM CG2162 INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	18945773	2L_18945773_SNP [dm3] 2L_18945773_SNP [dm6]	A	C	4.759e^-4	0.863	UPSTREAM CR42848 EXON CR44740	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4426748	3L_4426748_SNP [dm3] 3L_4426748_SNP [dm6]	A	G	4.766e^-4	0.863	DOWNSTREAM CG15020 INTERGENIC
3L	14800094	3L_14800094_SNP [dm3] 3L_14806994_SNP [dm6]	T	C	4.788e^-4	0.863	INTRON CG17839
2R	10101791	2R_10101791_SNP [dm3] 2R_14214286_SNP [dm6]	G	A	4.795e^-4	0.863	DOWNSTREAM RpS23 INTERGENIC	TF binding site mE1_TFBS_inv
3R	9199789	3R_9199789_SNP [dm3] 3R_13374067_SNP [dm6]	C	T	4.804e^-4	0.863	DOWNSTREAM CG34309 INTRON CG9813
3L	10550667	3L_10550667_INS [dm3] 3L_10557567_INS [dm6]	G	GCCCCTTGG	4.805e^-4	0.863	UTR_3_PRIME CG6527 DOWNSTREAM CG6527 INTRON A2bp1
2L	13549695	2L_13549695_SNP [dm3] 2L_13549695_SNP [dm6]	A	C	4.812e^-4	0.863	UPSTREAM kuz & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	9631432	3R_9631432_SNP [dm3] 3R_13805710_SNP [dm6]	G	A	4.813e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	498295	X_498295_SNP [dm3] X_604262_SNP [dm6]	A	G	4.815e^-4	0.863	INTRON CG13366
3L	12757270	3L_12757270_SNP [dm3] 3L_12764170_SNP [dm6]	A	T	4.823e^-4	0.863	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8002029	2L_8002029_SNP [dm3] 2L_8002029_SNP [dm6]	C	T	4.824e^-4	0.863	INTRON Wwox
X	19054931	X_19054931_SNP [dm3] X_19160898_SNP [dm6]	T	A	4.839e^-4	0.863	INTRON RhoGAP18B	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18374518	3L_18374518_SNP [dm3] 3L_18381418_SNP [dm6]	T	C	4.841e^-4	0.863	INTERGENIC
2L	19164225	2L_19164225_INS [dm3] 2L_19164225_INS [dm6]	T	TTTTGCTT	4.850e^-4	0.863	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11751055	3R_11751055_SNP [dm3] 3R_15925333_SNP [dm6]	G	T	4.852e^-4	0.863	UPSTREAM CG34276 INTRON CG4221
3R	3880537	3R_3880537_SNP [dm3] 3R_8054815_SNP [dm6]	C	G	4.853e^-4	0.863	INTRON CG43060
2R	10813786	2R_10813786_SNP [dm3] 2R_14926281_SNP [dm6]	A	G	4.864e^-4	0.863	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	6974739	X_6974739_SNP [dm3] X_7080706_SNP [dm6]	T	C	4.864e^-4	0.863	INTRON Sxl
X	18615255	X_18615255_SNP [dm3] X_18721222_SNP [dm6]	T	C	4.886e^-4	0.863	INTRON CCKLR-17D1
2L	12612672	2L_12612672_SNP [dm3] 2L_12612672_SNP [dm6]	C	A	4.897e^-4	0.863	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	4757271	X_4757271_SNP [dm3] X_4863238_SNP [dm6]	G	T	4.901e^-4	0.863	INTRON CG42594
2L	13687670	2L_13687670_SNP [dm3] 2L_13687670_SNP [dm6]	G	T	4.901e^-4	0.863	INTRON CG31814
2R	7534607	2R_7534607_SNP [dm3] 2R_11647102_SNP [dm6]	G	T	4.905e^-4	0.863	UPSTREAM CG9003 INTRON CG9003	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19357148	3R_19357148_SNP [dm3] 3R_23531426_SNP [dm6]	T	A	4.905e^-4	0.863	UPSTREAM CG10175 INTERGENIC
3L	3037123	3L_3037123_SNP [dm3] 3L_3037123_SNP [dm6]	C	T	4.907e^-4	0.863	INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3037960	3L_3037960_SNP [dm3] 3L_3037960_SNP [dm6]	A	C	4.907e^-4	0.863	SPLICE_SITE_REGION CG2162 SYNONYMOUS_CODING CG2162 UPSTREAM CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	519125	X_519125_SNP [dm3] X_625092_SNP [dm6]	C	T	4.908e^-4	0.863	UTR_5_PRIME CG13364 UPSTREAM CR45475 & 1 other DOWNSTREAM CG13369	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	5569504	X_5569504_INS [dm3] X_5675471_INS [dm6]	T	TTCCCATATCCATATCCAT...	4.913e^-4	0.863	CODON_INSERTION Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3552360	3L_3552360_SNP [dm3] 3L_3552360_SNP [dm6]	G	C	4.920e^-4	0.863	INTRON Eip63E
3L	17338247	3L_17338247_SNP [dm3] 3L_17345147_SNP [dm6]	T	A	4.921e^-4	0.863	UTR_3_PRIME Mip UPSTREAM brv2
2L	6476082	2L_6476082_SNP [dm3] 2L_6476082_SNP [dm6]	T	C	4.921e^-4	0.863	INTRON CG9536	TF binding site BDTNP1_TFBS_dl
2R	10725434	2R_10725434_SNP [dm3] 2R_14837929_SNP [dm6]	T	A	4.936e^-4	0.863	INTERGENIC
3R	19358494	3R_19358494_INS [dm3] 3R_23532772_INS [dm6]	A	AA	4.939e^-4	0.863	DOWNSTREAM CG10170 INTERGENIC
3L	13122502	3L_13122502_SNP [dm3] 3L_13129402_SNP [dm6]	C	T	4.956e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6297955	3R_6297955_SNP [dm3] 3R_10472233_SNP [dm6]	T	C	4.966e^-4	0.863	INTERGENIC
3L	14421399	3L_14421399_SNP [dm3] 3L_14428299_SNP [dm6]	A	T	4.972e^-4	0.863	UPSTREAM bbg INTRON bbg
3R	16402257	3R_16402257_SNP [dm3] 3R_20576535_SNP [dm6]	A	G	4.975e^-4	0.863	SYNONYMOUS_CODING TFAM UPSTREAM CG5412	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad

By genomic position
Variant impact
Gene name

Week 6 mean ascension (cm) phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results