DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.567e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2072 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	6048155	2L_6048155_SNP [dm3] 2L_6048155_SNP [dm6]	A	G	2.823e^-7	0.135	SYNONYMOUS_CODING CG34179 START_GAINED CG12393 UTR_5_PRIME slmo & 1 other UPSTREAM CG12393 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16076518	2R_16076518_SNP [dm3] 2R_20189013_SNP [dm6]	C	T	5.647e^-7	0.135	INTERGENIC
3R	21691531	3R_21691531_SNP [dm3] 3R_25865809_SNP [dm6]	A	G	6.979e^-7	0.135	INTRON CG5890
3R	22549045	3R_22549045_SNP [dm3] 3R_26723323_SNP [dm6]	G	A	8.881e^-7	0.135	INTRON CG6420
3R	22549137	3R_22549137_SNP [dm3] 3R_26723415_SNP [dm6]	A	T	8.881e^-7	0.135	INTRON CG6420
3R	22548961	3R_22548961_DEL [dm3] 3R_26723239_DEL [dm6]	TG	T	8.927e^-7	0.135	INTRON CG6420
3R	22542298	3R_22542298_SNP [dm3] 3R_26716576_SNP [dm6]	G	A	9.367e^-7	0.135	SYNONYMOUS_CODING CG6425	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22544991	3R_22544991_SNP [dm3] 3R_26719269_SNP [dm6]	A	T	9.367e^-7	0.135	SYNONYMOUS_CODING CG5484 DOWNSTREAM CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22545003	3R_22545003_SNP [dm3] 3R_26719281_SNP [dm6]	T	C	9.367e^-7	0.135	SYNONYMOUS_CODING CG5484 DOWNSTREAM CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22545012	3R_22545012_SNP [dm3] 3R_26719290_SNP [dm6]	C	T	9.367e^-7	0.135	SYNONYMOUS_CODING CG5484 DOWNSTREAM CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22545021	3R_22545021_SNP [dm3] 3R_26719299_SNP [dm6]	T	C	9.367e^-7	0.135	SYNONYMOUS_CODING CG5484 DOWNSTREAM CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22545050	3R_22545050_SNP [dm3] 3R_26719328_SNP [dm6]	A	T	9.367e^-7	0.135	DOWNSTREAM CG6420 INTRON CG5484	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22545064	3R_22545064_SNP [dm3] 3R_26719342_SNP [dm6]	A	T	9.367e^-7	0.135	DOWNSTREAM CG6420 INTRON CG5484	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22549199	3R_22549199_SNP [dm3] 3R_26723477_SNP [dm6]	A	T	1.032e^-6	0.138	INTRON CG6420
2L	6048227	2L_6048227_SNP [dm3] 2L_6048227_SNP [dm6]	T	C	1.446e^-6	0.164	SYNONYMOUS_CODING CG34179 UTR_5_PRIME slmo & 1 other UPSTREAM CG12393 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22543395	3R_22543395_SNP [dm3] 3R_26717673_SNP [dm6]	T	G	1.453e^-6	0.164	UPSTREAM CG5484 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22548932	3R_22548932_SNP [dm3] 3R_26723210_SNP [dm6]	C	A	1.489e^-6	0.164	INTRON CG6420
3R	22549408	3R_22549408_SNP [dm3] 3R_26723686_SNP [dm6]	G	T	1.571e^-6	0.164	INTRON CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15525692	2R_15525692_SNP [dm3] 2R_19638187_SNP [dm6]	T	C	1.928e^-6	0.19	DOWNSTREAM CG18367 & 2 others INTERGENIC
2R	10622250	2R_10622250_SNP [dm3] 2R_14734745_SNP [dm6]	A	T	2.900e^-6	0.258	INTERGENIC
3L	15090803	3L_15090803_SNP [dm3] 3L_15097703_SNP [dm6]	A	C	2.934e^-6	0.258	UPSTREAM CTPsyn DOWNSTREAM CR43973 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	15032038	2R_15032038_SNP [dm3] 2R_19144533_SNP [dm6]	T	A	3.025e^-6	0.258	UPSTREAM CR43399 INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15031080	2R_15031080_SNP [dm3] 2R_19143575_SNP [dm6]	T	A	3.318e^-6	0.266	UPSTREAM CR43399 INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6048217	2L_6048217_SNP [dm3] 2L_6048217_SNP [dm6]	C	A	3.401e^-6	0.266	NON_SYNONYMOUS_CODING CG34179 UTR_5_PRIME slmo & 1 other UPSTREAM CG12393 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	15525634	2R_15525634_SNP [dm3] 2R_19638129_SNP [dm6]	C	T	4.780e^-6	0.357	DOWNSTREAM CG18367 & 2 others INTERGENIC
2R	15525732	2R_15525732_SNP [dm3] 2R_19638227_SNP [dm6]	C	T	4.946e^-6	0.357	DOWNSTREAM CG18367 & 2 others INTERGENIC
2R	15525709	2R_15525709_SNP [dm3] 2R_19638204_SNP [dm6]	T	C	5.146e^-6	0.357	DOWNSTREAM CG18367 & 2 others INTERGENIC
X	13199667	X_13199667_SNP [dm3] X_13305634_SNP [dm6]	G	A	5.483e^-6	0.367	UTR_5_PRIME IP3K2 INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_cad
3R	21712691	3R_21712691_SNP [dm3] 3R_25886969_SNP [dm6]	A	G	6.745e^-6	0.436	SYNONYMOUS_CODING SppL
2R	9065287	2R_9065287_SNP [dm3] 2R_13177782_SNP [dm6]	A	T	7.707e^-6	0.482	SYNONYMOUS_CODING CG17724 UTR_3_PRIME seq & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15031498	2R_15031498_SNP [dm3] 2R_19143993_SNP [dm6]	T	C	8.165e^-6	0.494	UPSTREAM CR43399 INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
X	19624457	X_19624457_SNP [dm3] X_19730424_SNP [dm6]	T	C	1.000e^-5	0.573	UPSTREAM AP-1-2beta DOWNSTREAM CG12531 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15031106	2R_15031106_SNP [dm3] 2R_19143601_SNP [dm6]	C	G	1.020e^-5	0.573	UPSTREAM CR43399 INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	15090862	3L_15090862_DEL [dm3] 3L_15097762_DEL [dm6]	TCT	T	1.038e^-5	0.573	UPSTREAM CTPsyn DOWNSTREAM CR43973 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	10588369	2R_10588369_SNP [dm3] 2R_14700864_SNP [dm6]	G	A	1.107e^-5	0.593	INTRON mspo
2L	19965643	2L_19965643_SNP [dm3] 2L_19965643_SNP [dm6]	T	G	1.139e^-5	0.593	UTR_3_PRIME CG10680 DOWNSTREAM OS9 & 1 other
3L	15090924	3L_15090924_SNP [dm3] 3L_15097824_SNP [dm6]	T	A	1.209e^-5	0.612	UPSTREAM CTPsyn DOWNSTREAM CR43973 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	11018172	2R_11018172_SNP [dm3] 2R_15130667_SNP [dm6]	A	T	1.330e^-5	0.624	INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	15171691	2R_15171691_SNP [dm3] 2R_19284186_SNP [dm6]	T	G	1.348e^-5	0.624	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2R	17475354	2R_17475354_SNP [dm3] 2R_21587849_SNP [dm6]	T	C	1.371e^-5	0.624	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17475356	2R_17475356_SNP [dm3] 2R_21587851_SNP [dm6]	A	T	1.371e^-5	0.624	INTERGENIC	TF binding site mE1_TFBS_cad
X	7535575	X_7535575_SNP [dm3] X_7641542_SNP [dm6]	T	C	1.397e^-5	0.624	INTRON ct
2R	10622258	2R_10622258_SNP [dm3] 2R_14734753_SNP [dm6]	T	C	1.469e^-5	0.627	INTERGENIC
3R	21691410	3R_21691410_SNP [dm3] 3R_25865688_SNP [dm6]	T	C	1.472e^-5	0.627	INTRON CG5890
2L	6870030	2L_6870030_SNP [dm3] 2L_6870030_SNP [dm6]	A	G	1.545e^-5	0.644	INTRON Nha1
3L	15312622	3L_15312622_SNP [dm3] 3L_15319522_SNP [dm6]	A	G	1.639e^-5	0.668	INTERGENIC
2L	11828748	2L_11828748_SNP [dm3] 2L_11828748_SNP [dm6]	A	G	1.775e^-5	0.7	SYNONYMOUS_CODING esc INTRON Pde1c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15091041	3L_15091041_SNP [dm3] 3L_15097941_SNP [dm6]	T	A	1.801e^-5	0.7	UTR_5_PRIME CTPsyn UPSTREAM CTPsyn DOWNSTREAM CR43973 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	12862127	3L_12862127_DEL [dm3] 3L_12869027_DEL [dm6]	TC	T	1.830e^-5	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11005350	2R_11005350_SNP [dm3] 2R_15117845_SNP [dm6]	G	A	1.933e^-5	0.718	INTRON chn	TF binding site BDTNP1_TFBS_dl
3L	15090970	3L_15090970_SNP [dm3] 3L_15097870_SNP [dm6]	C	G	1.977e^-5	0.718	UPSTREAM CTPsyn DOWNSTREAM CR43973 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	22549262	3R_22549262_SNP [dm3] 3R_26723540_SNP [dm6]	C	T	1.990e^-5	0.718	INTRON CG6420	TF binding site mE1_TFBS_cad
3R	25961075	3R_25961075_SNP [dm3] 3R_30135353_SNP [dm6]	G	A	2.433e^-5	0.856	SYNONYMOUS_CODING AdoR UPSTREAM Tpi	TF binding site mE1_TFBS_chinmo
2L	3160442	2L_3160442_SNP [dm3] 2L_3160442_SNP [dm6]	G	A	2.523e^-5	0.856	NON_SYNONYMOUS_CODING gkt UPSTREAM Mad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	18080125	3L_18080125_SNP [dm3] 3L_18087025_SNP [dm6]	A	G	2.574e^-5	0.856	INTRON CR32194 & 1 other
2L	9068482	2L_9068482_SNP [dm3] 2L_9068482_SNP [dm6]	G	A	2.596e^-5	0.856	INTRON CG31708
X	4668381	X_4668381_SNP [dm3] X_4774348_SNP [dm6]	C	A	2.734e^-5	0.856	DOWNSTREAM CR45515 INTERGENIC
2L	9109893	2L_9109893_SNP [dm3] 2L_9109893_SNP [dm6]	T	C	2.880e^-5	0.856	INTERGENIC
2R	10229932	2R_10229932_SNP [dm3] 2R_14342427_SNP [dm6]	C	A	2.908e^-5	0.856	INTRON Shroom	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15482502	X_15482502_SNP [dm3] X_15588469_SNP [dm6]	A	C	2.931e^-5	0.856	SYNONYMOUS_CODING CG8105 INTRON CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19835957	3R_19835957_SNP [dm3] 3R_24010235_SNP [dm6]	G	C	2.974e^-5	0.856	INTRON KrT95D
X	13199689	X_13199689_SNP [dm3] X_13305656_SNP [dm6]	A	G	2.999e^-5	0.856	UTR_5_PRIME IP3K2 INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_cad
2L	18718835	2L_18718835_SNP [dm3] 2L_18718835_SNP [dm6]	C	A	3.051e^-5	0.856	INTRON CG10348
3R	19835961	3R_19835961_SNP [dm3] 3R_24010239_SNP [dm6]	G	A	3.090e^-5	0.856	INTRON KrT95D
3R	19836085	3R_19836085_DEL [dm3] 3R_24010363_DEL [dm6]	TTGTTAAACAAT...	T	3.090e^-5	0.856	INTRON KrT95D
3L	10489602	3L_10489602_DEL [dm3] 3L_10496502_DEL [dm6]	TC	T	3.092e^-5	0.856	INTRON A2bp1
2L	9098848	2L_9098848_SNP [dm3] 2L_9098848_SNP [dm6]	T	G	3.187e^-5	0.856	UPSTREAM CR44482 DOWNSTREAM CG31609 INTERGENIC
3R	19835974	3R_19835974_SNP [dm3] 3R_24010252_SNP [dm6]	A	T	3.340e^-5	0.856	INTRON KrT95D
2L	6869510	2L_6869510_SNP [dm3] 2L_6869510_SNP [dm6]	T	C	3.353e^-5	0.856	INTRON Nha1
3R	19836116	3R_19836116_SNP [dm3] 3R_24010394_SNP [dm6]	A	T	3.373e^-5	0.856	INTRON KrT95D
X	574987	X_574987_SNP [dm3] X_680954_SNP [dm6]	G	A	3.668e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_eve mE1_TFBS_HSA
3R	19836069	3R_19836069_SNP [dm3] 3R_24010347_SNP [dm6]	T	A	3.684e^-5	0.856	INTRON KrT95D
3L	15091049	3L_15091049_SNP [dm3] 3L_15097949_SNP [dm6]	G	T	3.702e^-5	0.856	UTR_5_PRIME CTPsyn UPSTREAM CTPsyn DOWNSTREAM CR43973 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	7241448	2L_7241448_SNP [dm3] 2L_7241448_SNP [dm6]	C	G	3.705e^-5	0.856	UPSTREAM Ndae1 INTRON Ndae1
3L	17982336	3L_17982336_SNP [dm3] 3L_17989236_SNP [dm6]	C	T	3.730e^-5	0.856	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	19836103	3R_19836103_SNP [dm3] 3R_24010381_SNP [dm6]	C	A	3.748e^-5	0.856	INTRON KrT95D
2R	12381003	2R_12381003_INS [dm3] 2R_16493498_INS [dm6]	G	CAAAA	3.754e^-5	0.856	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2183902	2R_2183902_SNP [dm3] 2R_6296397_SNP [dm6]	C	A	3.770e^-5	0.856	INTERGENIC	transposable element FlyBase
2R	15171922	2R_15171922_SNP [dm3] 2R_19284417_SNP [dm6]	T	G	3.815e^-5	0.856	UPSTREAM CG11906 DOWNSTREAM CG10476 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9647106	2R_9647106_SNP [dm3] 2R_13759601_SNP [dm6]	C	T	3.960e^-5	0.856	DOWNSTREAM CG6280 INTERGENIC
3L	4001962	3L_4001962_INS [dm3] 3L_4001962_INS [dm6]	A	ACA	4.240e^-5	0.856	INTERGENIC
3R	24280939	3R_24280939_SNP [dm3] 3R_28455217_SNP [dm6]	G	A	4.273e^-5	0.856	INTRON beat-VI
2L	9085820	2L_9085820_SNP [dm3] 2L_9085820_SNP [dm6]	T	G	4.413e^-5	0.856	INTRON Toll-4
X	4768640	X_4768640_SNP [dm3] X_4874607_SNP [dm6]	C	T	4.590e^-5	0.856	UPSTREAM CR43495 INTRON CG42594
3R	24280933	3R_24280933_SNP [dm3] 3R_28455211_SNP [dm6]	T	A	4.715e^-5	0.856	INTRON beat-VI
2L	9096365	2L_9096365_SNP [dm3] 2L_9096365_SNP [dm6]	T	G	4.768e^-5	0.856	INTERGENIC	TF binding site mE1_TFBS_sens
2R	16121158	2R_16121158_SNP [dm3] 2R_20233653_SNP [dm6]	C	T	4.773e^-5	0.856	SYNONYMOUS_CODING CG11044 DOWNSTREAM tRNA:G3:56EFb
2L	15631368	2L_15631368_SNP [dm3] 2L_15631368_SNP [dm6]	G	A	4.787e^-5	0.856	SYNONYMOUS_CODING CG18480	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15631374	2L_15631374_SNP [dm3] 2L_15631374_SNP [dm6]	A	T	4.787e^-5	0.856	SYNONYMOUS_CODING CG18480	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19836044	3R_19836044_SNP [dm3] 3R_24010322_SNP [dm6]	T	A	4.922e^-5	0.856	INTRON KrT95D
2L	8661090	2L_8661090_SNP [dm3] 2L_8661090_SNP [dm6]	G	A	4.925e^-5	0.856	INTRON Sema-1a
2L	9097057	2L_9097057_SNP [dm3] 2L_9097057_SNP [dm6]	C	T	4.933e^-5	0.856	UPSTREAM CG31609 INTERGENIC
2R	11017772	2R_11017772_SNP [dm3] 2R_15130267_SNP [dm6]	A	G	4.966e^-5	0.856	INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	6134629	2L_6134629_SNP [dm3] 2L_6134629_SNP [dm6]	A	T	5.069e^-5	0.856	UPSTREAM CR45719 INTERGENIC
3R	5695673	3R_5695673_SNP [dm3] 3R_9869951_SNP [dm6]	C	G	5.074e^-5	0.856	INTERGENIC
3L	15090986	3L_15090986_SNP [dm3] 3L_15097886_SNP [dm6]	T	A	5.142e^-5	0.856	UPSTREAM CTPsyn DOWNSTREAM CR43973 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	11005310	2R_11005310_SNP [dm3] 2R_15117805_SNP [dm6]	A	T	5.376e^-5	0.856	INTRON chn	TF binding site BDTNP1_TFBS_dl
X	7000160	X_7000160_SNP [dm3] X_7106127_SNP [dm6]	C	G	5.382e^-5	0.856	UTR_3_PRIME CG8300 DOWNSTREAM fz4	TF binding site BDTNP1_TFBS_da
X	13780495	X_13780495_SNP [dm3] X_13886462_SNP [dm6]	G	A	5.424e^-5	0.856	INTRON mamo
2L	18774061	2L_18774061_SNP [dm3] 2L_18774061_SNP [dm6]	A	T	5.425e^-5	0.856	UPSTREAM CR43804 INTRON ham
2R	11017965	2R_11017965_SNP [dm3] 2R_15130460_SNP [dm6]	G	A	5.437e^-5	0.856	INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3L	18842463	3L_18842463_SNP [dm3] 3L_18849363_SNP [dm6]	A	G	5.535e^-5	0.856	INTERGENIC
3L	18842458	3L_18842458_SNP [dm3] 3L_18849358_SNP [dm6]	C	T	5.577e^-5	0.856	INTERGENIC
2R	10631248	2R_10631248_SNP [dm3] 2R_14743743_SNP [dm6]	A	G	5.583e^-5	0.856	INTRON CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14028089	2R_14028089_SNP [dm3] 2R_18140584_SNP [dm6]	G	T	5.644e^-5	0.856	UPSTREAM pAbp DOWNSTREAM Pcl INTRON pAbp	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3R	1836442	3R_1836442_SNP [dm3] 3R_6010720_SNP [dm6]	G	T	5.722e^-5	0.856	SYNONYMOUS_CODING CG10280	TF binding site BDTNP1_TFBS_dl
3R	9853016	3R_9853016_SNP [dm3] 3R_14027294_SNP [dm6]	C	T	5.840e^-5	0.856	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	4227586	2R_4227586_DEL [dm3] 2R_8340081_DEL [dm6]	TGCCGGAAA	G	5.877e^-5	0.856	INTRON pdm3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	20080488	3L_20080488_SNP [dm3] 3L_20087388_SNP [dm6]	A	T	6.110e^-5	0.856	INTRON sNPF-R
X	12639719	X_12639719_SNP [dm3] X_12745686_SNP [dm6]	G	A	6.119e^-5	0.856	NON_SYNONYMOUS_CODING CG4004 UPSTREAM CG4004 INTRON CG4004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	10588349	2R_10588349_SNP [dm3] 2R_14700844_SNP [dm6]	C	T	6.206e^-5	0.856	INTRON mspo
3L	17774433	3L_17774433_SNP [dm3] 3L_17781333_SNP [dm6]	C	A	6.227e^-5	0.856	INTERGENIC
X	586212	X_586212_SNP [dm3] X_692179_SNP [dm6]	T	C	6.302e^-5	0.856	INTRON sdk
X	6901532	X_6901532_INS [dm3] X_7007499_INS [dm6]	A	AGCA	6.305e^-5	0.856	INTRON Inx7
2L	6725449	2L_6725449_SNP [dm3] 2L_6725449_SNP [dm6]	A	T	6.319e^-5	0.856	INTRON Liprin-alpha	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl
2L	9132757	2L_9132757_SNP [dm3] 2L_9132757_SNP [dm6]	A	C	6.432e^-5	0.856	INTRON CG32982
2R	15035166	2R_15035166_SNP [dm3] 2R_19147661_SNP [dm6]	T	G	6.590e^-5	0.856	INTRON ena	TF binding site mE1_TFBS_HSA
3R	20799626	3R_20799626_DEL [dm3] 3R_24973904_DEL [dm6]	TGGAATTGT	T	6.675e^-5	0.856	INTERGENIC
3L	2027018	3L_2027018_SNP [dm3] 3L_2027018_SNP [dm6]	G	C	6.879e^-5	0.856	NON_SYNONYMOUS_CODING CG34259
2L	5070812	2L_5070812_SNP [dm3] 2L_5070812_SNP [dm6]	A	G	6.926e^-5	0.856	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3R	21489098	3R_21489098_SNP [dm3] 3R_25663376_SNP [dm6]	A	G	6.959e^-5	0.856	NON_SYNONYMOUS_CODING RASSF8 UPSTREAM CR45208
3R	21489100	3R_21489100_SNP [dm3] 3R_25663378_SNP [dm6]	A	G	6.959e^-5	0.856	SYNONYMOUS_CODING RASSF8 UPSTREAM CR45208
2L	1124684	2L_1124684_SNP [dm3] 2L_1124684_SNP [dm6]	G	T	6.975e^-5	0.856	INTRON Pino	TF binding site mE1_TFBS_HSA
2L	9102199	2L_9102199_SNP [dm3] 2L_9102199_SNP [dm6]	C	T	7.014e^-5	0.856	INTERGENIC
3L	3552360	3L_3552360_SNP [dm3] 3L_3552360_SNP [dm6]	G	C	7.160e^-5	0.856	INTRON Eip63E
X	19761612	X_19761612_SNP [dm3] X_19867579_SNP [dm6]	C	T	7.218e^-5	0.856	INTRON Hers	TF binding site BDTNP1_TFBS_dl
3L	3521221	3L_3521221_SNP [dm3] 3L_3521221_SNP [dm6]	C	G	7.350e^-5	0.856	INTRON Eip63E
X	4799123	X_4799123_SNP [dm3] X_4905090_SNP [dm6]	A	T	7.403e^-5	0.856	SYNONYMOUS_CODING CG42594 UTR_3_PRIME CG42594	TF binding site mE1_TFBS_chinmo
2R	12275595	2R_12275595_SNP [dm3] 2R_16388090_SNP [dm6]	A	G	7.495e^-5	0.856	INTRON Sema-2b
X	2898074	X_2898074_SNP [dm3] X_3004041_SNP [dm6]	T	A	7.561e^-5	0.856	INTRON kirre
2R	10588650	2R_10588650_SNP [dm3] 2R_14701145_SNP [dm6]	A	T	7.596e^-5	0.856	INTRON mspo
X	558934	X_558934_SNP [dm3] X_664901_SNP [dm6]	A	G	7.606e^-5	0.856	INTERGENIC
X	19761653	X_19761653_SNP [dm3] X_19867620_SNP [dm6]	T	A	7.628e^-5	0.856	INTRON Hers	TF binding site BDTNP1_TFBS_dl
3R	19940241	3R_19940241_SNP [dm3] 3R_24114519_SNP [dm6]	T	C	7.646e^-5	0.856	NON_SYNONYMOUS_CODING CG13607 INTRON Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21283409	X_21283409_SNP [dm3] X_21412382_SNP [dm6]	G	A	7.741e^-5	0.856	INTERGENIC
X	503825	X_503825_SNP [dm3] X_609792_SNP [dm6]	G	A	7.821e^-5	0.856	DOWNSTREAM CG13366 INTRON CG13366
3R	17625072	3R_17625072_SNP [dm3] 3R_21799350_SNP [dm6]	T	A	7.843e^-5	0.856	UPSTREAM mir-4969 INTRON CASK
X	7002311	X_7002311_SNP [dm3] X_7108278_SNP [dm6]	C	T	7.847e^-5	0.856	INTRON fz4
X	7002439	X_7002439_SNP [dm3] X_7108406_SNP [dm6]	T	C	7.847e^-5	0.856	SYNONYMOUS_CODING fz4
3L	13855677	3L_13855677_SNP [dm3] 3L_13862577_SNP [dm6]	G	A	7.969e^-5	0.856	INTRON CG8745	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	21283410	X_21283410_SNP [dm3] X_21412383_SNP [dm6]	T	C	8.010e^-5	0.856	INTERGENIC
2L	9098858	2L_9098858_SNP [dm3] 2L_9098858_SNP [dm6]	T	C	8.049e^-5	0.856	UPSTREAM CR44482 DOWNSTREAM CG31609 INTERGENIC
2L	20510228	2L_20510228_SNP [dm3] 2L_20510228_SNP [dm6]	A	C	8.191e^-5	0.856	INTERGENIC
2R	10230235	2R_10230235_SNP [dm3] 2R_14342730_SNP [dm6]	T	C	8.216e^-5	0.856	INTRON Shroom
3R	21963325	3R_21963325_SNP [dm3] 3R_26137603_SNP [dm6]	G	C	8.240e^-5	0.856	DOWNSTREAM CG6142 INTERGENIC	TF binding site mE1_TFBS_zfh1
X	8434888	X_8434888_SNP [dm3] X_8540855_SNP [dm6]	G	C	8.245e^-5	0.856	INTRON Nrg
X	7002908	X_7002908_SNP [dm3] X_7108875_SNP [dm6]	T	C	8.252e^-5	0.856	SYNONYMOUS_CODING fz4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	9104344	2L_9104344_SNP [dm3] 2L_9104344_SNP [dm6]	G	A	8.433e^-5	0.856	INTERGENIC
3L	15091154	3L_15091154_INS [dm3] 3L_15098054_INS [dm6]	T	TT	8.479e^-5	0.856	UTR_5_PRIME CTPsyn UPSTREAM CTPsyn DOWNSTREAM CR43973 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	5070796	2L_5070796_SNP [dm3] 2L_5070796_SNP [dm6]	A	C	8.559e^-5	0.856	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3R	14557486	3R_14557486_SNP [dm3] 3R_18731764_SNP [dm6]	T	A	8.573e^-5	0.856	UTR_3_PRIME Cha UPSTREAM CG14302 DOWNSTREAM Cha
3R	24280940	3R_24280940_SNP [dm3] 3R_28455218_SNP [dm6]	G	A	8.599e^-5	0.856	INTRON beat-VI
X	10437744	X_10437744_INS [dm3] X_10543711_INS [dm6]	T	TT	8.664e^-5	0.856	INTRON spri
3R	25064772	3R_25064772_SNP [dm3] 3R_29239050_SNP [dm6]	A	G	8.671e^-5	0.856	SYNONYMOUS_CODING CG31427 UTR_3_PRIME CG31427 UPSTREAM CG11951
X	561268	X_561268_SNP [dm3] X_667235_SNP [dm6]	T	A	8.694e^-5	0.856	INTERGENIC
2L	9102063	2L_9102063_SNP [dm3] 2L_9102063_SNP [dm6]	T	C	8.751e^-5	0.856	INTERGENIC
X	21283423	X_21283423_SNP [dm3] X_21412396_SNP [dm6]	A	C	8.843e^-5	0.856	INTERGENIC
2R	10692512	2R_10692512_SNP [dm3] 2R_14805007_SNP [dm6]	G	A	8.919e^-5	0.856	INTRON kn	regulatory region REDfly_CRMs
X	1099535	X_1099535_SNP [dm3] X_1205502_SNP [dm6]	A	G	9.045e^-5	0.856	DOWNSTREAM CG11381 INTERGENIC
2L	9104360	2L_9104360_SNP [dm3] 2L_9104360_SNP [dm6]	C	G	9.051e^-5	0.856	INTERGENIC
2L	9103563	2L_9103563_SNP [dm3] 2L_9103563_SNP [dm6]	C	T	9.084e^-5	0.856	INTERGENIC
2L	9103773	2L_9103773_SNP [dm3] 2L_9103773_SNP [dm6]	T	C	9.100e^-5	0.856	INTERGENIC
2L	9104187	2L_9104187_SNP [dm3] 2L_9104187_SNP [dm6]	T	C	9.100e^-5	0.856	INTERGENIC
2R	17442293	2R_17442293_SNP [dm3] 2R_21554788_SNP [dm6]	A	G	9.245e^-5	0.856	INTRON Egfr
3L	4002925	3L_4002925_SNP [dm3] 3L_4002925_SNP [dm6]	T	G	9.295e^-5	0.856	UPSTREAM CG14985 INTERGENIC
2R	12381091	2R_12381091_SNP [dm3] 2R_16493586_SNP [dm6]	A	G	9.317e^-5	0.856	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9111167	2L_9111167_SNP [dm3] 2L_9111167_SNP [dm6]	C	T	9.462e^-5	0.856	UPSTREAM Or30a INTERGENIC
2R	12381260	2R_12381260_SNP [dm3] 2R_16493755_SNP [dm6]	C	A	9.479e^-5	0.856	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9100066	2L_9100066_SNP [dm3] 2L_9100066_SNP [dm6]	A	G	9.485e^-5	0.856	DOWNSTREAM CR44482 INTERGENIC
X	1100275	X_1100275_SNP [dm3] X_1206242_SNP [dm6]	G	A	9.540e^-5	0.856	UPSTREAM CG14624 DOWNSTREAM CG11381 INTERGENIC
3L	11409708	3L_11409708_SNP [dm3] 3L_11416608_SNP [dm6]	T	C	9.542e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	5695611	3R_5695611_SNP [dm3] 3R_9869889_SNP [dm6]	C	A	9.617e^-5	0.856	INTERGENIC
3L	17748707	3L_17748707_SNP [dm3] 3L_17755607_SNP [dm6]	T	G	9.632e^-5	0.856	INTRON Adgf-A & 1 other
3L	15312583	3L_15312583_SNP [dm3] 3L_15319483_SNP [dm6]	G	T	9.700e^-5	0.856	INTERGENIC
2L	9103993	2L_9103993_SNP [dm3] 2L_9103993_SNP [dm6]	C	T	9.710e^-5	0.856	INTERGENIC
3L	17761851	3L_17761851_SNP [dm3] 3L_17768751_SNP [dm6]	A	G	9.758e^-5	0.856	INTERGENIC
3L	1046237	3L_1046237_SNP [dm3] 3L_1046237_SNP [dm6]	G	C	9.775e^-5	0.856	INTRON bab1
X	8284647	X_8284647_SNP [dm3] X_8390614_SNP [dm6]	C	A	9.816e^-5	0.856	INTERGENIC
3L	6828679	3L_6828679_SNP [dm3] 3L_6835579_SNP [dm6]	G	T	9.926e^-5	0.856	INTERGENIC
2L	5941349	2L_5941349_SNP [dm3] 2L_5941349_SNP [dm6]	G	A	9.936e^-5	0.856	UPSTREAM CR45289 INTERGENIC
3L	2605017	3L_2605017_INS [dm3] 3L_2605017_INS [dm6]	C	CC	9.964e^-5	0.856	INTRON Pxn
X	8435020	X_8435020_SNP [dm3] X_8540987_SNP [dm6]	C	T	9.974e^-5	0.856	INTRON Nrg
3R	15953637	3R_15953637_SNP [dm3] 3R_20127915_SNP [dm6]	G	A	1.002e^-4	0.856	INTERGENIC
3R	18805021	3R_18805021_SNP [dm3] 3R_22979299_SNP [dm6]	A	G	1.003e^-4	0.856	INTERGENIC
2L	9103030	2L_9103030_SNP [dm3] 2L_9103030_SNP [dm6]	T	A	1.006e^-4	0.856	INTERGENIC
3R	15488663	3R_15488663_SNP [dm3] 3R_19662941_SNP [dm6]	A	G	1.009e^-4	0.856	INTRON ort
3R	14682442	3R_14682442_SNP [dm3] 3R_18856720_SNP [dm6]	T	C	1.011e^-4	0.856	INTERGENIC
2L	14113564	2L_14113564_SNP [dm3] 2L_14113564_SNP [dm6]	C	T	1.012e^-4	0.856	INTERGENIC
2L	19203970	2L_19203970_SNP [dm3] 2L_19203970_SNP [dm6]	C	T	1.012e^-4	0.856	INTRON drl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	10674849	2R_10674849_SNP [dm3] 2R_14787344_SNP [dm6]	G	A	1.014e^-4	0.856	INTRON kn
2R	14666881	2R_14666881_SNP [dm3] 2R_18779376_SNP [dm6]	A	G	1.017e^-4	0.856	INTERGENIC
2R	17475353	2R_17475353_SNP [dm3] 2R_21587848_SNP [dm6]	T	G	1.034e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10353623	2L_10353623_SNP [dm3] 2L_10353623_SNP [dm6]	C	T	1.036e^-4	0.856	SYNONYMOUS_CODING CG34367	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11015784	2R_11015784_DEL [dm3] 2R_15128279_DEL [dm6]	TG	T	1.041e^-4	0.856	UPSTREAM chn INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	11151841	X_11151841_SNP [dm3] X_11257808_SNP [dm6]	G	A	1.042e^-4	0.856	INTRON CG44422	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13747816	3R_13747816_SNP [dm3] 3R_17922094_SNP [dm6]	A	G	1.045e^-4	0.856	INTRON cpo
X	8284600	X_8284600_SNP [dm3] X_8390567_SNP [dm6]	C	T	1.047e^-4	0.856	INTERGENIC
3L	1927796	3L_1927796_SNP [dm3] 3L_1927796_SNP [dm6]	T	G	1.059e^-4	0.856	INTRON Dbx	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1086343	X_1086343_DEL [dm3] X_1192310_DEL [dm6]	AG	A	1.062e^-4	0.856	INTRON CG11380
3L	3449294	3L_3449294_SNP [dm3] 3L_3449294_SNP [dm6]	A	T	1.065e^-4	0.856	INTRON eIF5B
X	14163395	X_14163395_SNP [dm3] X_14269362_SNP [dm6]	C	T	1.065e^-4	0.856	SYNONYMOUS_CODING na
2R	15171588	2R_15171588_SNP [dm3] 2R_19284083_SNP [dm6]	T	A	1.066e^-4	0.856	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
3L	8870479	3L_8870479_SNP [dm3] 3L_8877379_SNP [dm6]	T	C	1.077e^-4	0.856	INTRON dally
3R	21691349	3R_21691349_SNP [dm3] 3R_25865627_SNP [dm6]	G	C	1.090e^-4	0.856	INTRON CG5890
2L	3160189	2L_3160189_SNP [dm3] 2L_3160189_SNP [dm6]	G	C	1.091e^-4	0.856	UPSTREAM Mad INTRON gkt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	26817362	3R_26817362_SNP [dm3] 3R_30991640_SNP [dm6]	A	T	1.092e^-4	0.856	DOWNSTREAM CG31007 INTRON 5-HT7
3R	5637571	3R_5637571_SNP [dm3] 3R_9811849_SNP [dm6]	C	T	1.098e^-4	0.856	UPSTREAM CG8534 INTRON CR44035	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	677842	3L_677842_INS [dm3] 3L_677842_INS [dm6]	A	AGTAACAATACA...	1.105e^-4	0.856	DOWNSTREAM CG17129 INTERGENIC
3R	1709233	3R_1709233_DEL [dm3] 3R_5883511_DEL [dm6]	CC	C	1.106e^-4	0.856	INTRON CG34113
2L	17716933	2L_17716933_SNP [dm3] 2L_17716933_SNP [dm6]	C	G	1.110e^-4	0.856	INTRON CadN
X	517109	X_517109_SNP [dm3] X_623076_SNP [dm6]	A	G	1.116e^-4	0.856	UPSTREAM CG13369 DOWNSTREAM mod_r_ INTERGENIC
2L	14569611	2L_14569611_SNP [dm3] 2L_14569611_SNP [dm6]	C	T	1.122e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6029582	2L_6029582_SNP [dm3] 2L_6029582_SNP [dm6]	G	A	1.125e^-4	0.856	INTRON CG9109
3L	1927745	3L_1927745_SNP [dm3] 3L_1927745_SNP [dm6]	C	T	1.150e^-4	0.856	INTRON Dbx	TF binding site mE1_TFBS_chinmo
2L	11831976	2L_11831976_DEL [dm3] 2L_11831976_DEL [dm6]	TA	T	1.153e^-4	0.856	INTRON Pde1c
2L	9092603	2L_9092603_INS [dm3] 2L_9092603_INS [dm6]	C	CTACCACTCTACTCTACCA...	1.168e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2R	13768640	2R_13768640_SNP [dm3] 2R_17881135_SNP [dm6]	C	T	1.168e^-4	0.856	SYNONYMOUS_CODING CG30110 INTRON Elk
2L	18939692	2L_18939692_SNP [dm3] 2L_18939692_SNP [dm6]	A	G	1.174e^-4	0.856	SYNONYMOUS_CODING ssp3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15276294	3L_15276294_SNP [dm3] 3L_15283194_SNP [dm6]	G	A	1.183e^-4	0.856	INTERGENIC
3L	15090973	3L_15090973_SNP [dm3] 3L_15097873_SNP [dm6]	T	G	1.187e^-4	0.856	UPSTREAM CTPsyn DOWNSTREAM CR43973 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	9102315	2L_9102315_SNP [dm3] 2L_9102315_SNP [dm6]	A	C	1.197e^-4	0.856	INTERGENIC
2L	9136660	2L_9136660_SNP [dm3] 2L_9136660_SNP [dm6]	G	C	1.203e^-4	0.856	INTRON CG32982
3R	24872287	3R_24872287_SNP [dm3] 3R_29046565_SNP [dm6]	C	T	1.207e^-4	0.856	UTR_3_PRIME Pkc98E
2R	10674892	2R_10674892_SNP [dm3] 2R_14787387_SNP [dm6]	G	A	1.218e^-4	0.856	INTRON kn
X	21284025	X_21284025_SNP [dm3] X_21412998_SNP [dm6]	C	G	1.219e^-4	0.856	INTERGENIC
2L	3154887	2L_3154887_SNP [dm3] 2L_3154887_SNP [dm6]	A	T	1.223e^-4	0.856	INTRON Mad
2R	9812289	2R_9812289_SNP [dm3] 2R_13924784_SNP [dm6]	A	C	1.223e^-4	0.856	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	21283662	X_21283662_INS [dm3] X_21412635_INS [dm6]	T	TATGAGGCTAATTT...	1.225e^-4	0.856	INTERGENIC
2R	15525812	2R_15525812_SNP [dm3] 2R_19638307_SNP [dm6]	G	A	1.225e^-4	0.856	DOWNSTREAM CG18367 & 2 others INTERGENIC
X	501685	X_501685_SNP [dm3] X_607652_SNP [dm6]	T	A	1.233e^-4	0.856	INTRON CG13366	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	6310568	2L_6310568_SNP [dm3] 2L_6310568_SNP [dm6]	A	T	1.236e^-4	0.856	INTRON Ddr
2L	6048071	2L_6048071_SNP [dm3] 2L_6048071_SNP [dm6]	A	G	1.243e^-4	0.856	UTR_5_PRIME slmo & 1 other UTR_3_PRIME CG34179 UPSTREAM CG12393 & 1 other INTRON slmo & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18877353	3R_18877353_SNP [dm3] 3R_23051631_SNP [dm6]	A	T	1.255e^-4	0.856	UPSTREAM Gr94a & 1 other INTRON p53	TF binding site mE1_TFBS_sens
3R	15933516	3R_15933516_SNP [dm3] 3R_20107794_SNP [dm6]	T	C	1.258e^-4	0.856	INTRON CG31206
2R	15171593	2R_15171593_SNP [dm3] 2R_19284088_SNP [dm6]	A	T	1.263e^-4	0.856	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
X	559535	X_559535_SNP [dm3] X_665502_SNP [dm6]	T	G	1.264e^-4	0.856	INTERGENIC	transposable element FlyBase
3L	10372091	3L_10372091_SNP [dm3] 3L_10378991_SNP [dm6]	T	C	1.265e^-4	0.856	INTERGENIC
2L	5895155	2L_5895155_SNP [dm3] 2L_5895155_SNP [dm6]	A	G	1.284e^-4	0.856	INTERGENIC
2L	8507662	2L_8507662_SNP [dm3] 2L_8507662_SNP [dm6]	A	T	1.287e^-4	0.856	UPSTREAM Dh31 INTERGENIC
2R	11005196	2R_11005196_SNP [dm3] 2R_15117691_SNP [dm6]	G	C	1.293e^-4	0.856	INTRON chn	TF binding site BDTNP1_TFBS_dl
2L	13041210	2L_13041210_SNP [dm3] 2L_13041210_SNP [dm6]	G	T	1.300e^-4	0.856	INTRON CG9932
2L	13041227	2L_13041227_SNP [dm3] 2L_13041227_SNP [dm6]	C	T	1.300e^-4	0.856	INTRON CG9932
2L	9114155	2L_9114155_SNP [dm3] 2L_9114155_SNP [dm6]	C	T	1.306e^-4	0.856	DOWNSTREAM Or30a INTERGENIC
X	2729480	X_2729480_SNP [dm3] X_2835447_SNP [dm6]	A	C	1.319e^-4	0.856	INTRON kirre
3R	22882499	3R_22882499_SNP [dm3] 3R_27056777_SNP [dm6]	G	A	1.337e^-4	0.856	SPLICE_SITE_REGION RYa-R INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	21991489	3R_21991489_SNP [dm3] 3R_26165767_SNP [dm6]	A	T	1.351e^-4	0.856	INTERGENIC
2R	11416864	2R_11416864_SNP [dm3] 2R_15529359_SNP [dm6]	A	T	1.351e^-4	0.856	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14163280	X_14163280_SNP [dm3] X_14269247_SNP [dm6]	T	A	1.359e^-4	0.856	SPLICE_SITE_REGION na INTRON na
2L	6332495	2L_6332495_SNP [dm3] 2L_6332495_SNP [dm6]	G	A	1.362e^-4	0.856	UTR_3_PRIME PDZ-GEF DOWNSTREAM PDZ-GEF & 1 other
3L	15093377	3L_15093377_SNP [dm3] 3L_15100277_SNP [dm6]	C	T	1.364e^-4	0.856	UPSTREAM CR43973 INTRON CTPsyn EXON CR43972	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7537717	2R_7537717_SNP [dm3] 2R_11650212_SNP [dm6]	T	A	1.373e^-4	0.856	INTRON CG9003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	21991468	3R_21991468_SNP [dm3] 3R_26165746_SNP [dm6]	A	G	1.382e^-4	0.856	INTERGENIC
2L	19676127	2L_19676127_SNP [dm3] 2L_19676127_SNP [dm6]	C	A	1.385e^-4	0.856	INTRON Lar
2R	18179211	2R_18179211_SNP [dm3] 2R_22291706_SNP [dm6]	A	G	1.399e^-4	0.856	UPSTREAM CR43422 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21137939	X_21137939_SNP [dm3] X_21266912_SNP [dm6]	C	T	1.400e^-4	0.856	INTRON CG32521
3R	22803156	3R_22803156_SNP [dm3] 3R_26977434_SNP [dm6]	A	T	1.401e^-4	0.856	UTR_3_PRIME CG5521
2R	12381221	2R_12381221_SNP [dm3] 2R_16493716_SNP [dm6]	C	T	1.407e^-4	0.856	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	7427284	2L_7427284_SNP [dm3] 2L_7427284_SNP [dm6]	C	A	1.414e^-4	0.856	SYNONYMOUS_CODING CG5261 UPSTREAM CG5261	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	11422455	3L_11422455_SNP [dm3] 3L_11429355_SNP [dm6]	C	T	1.417e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	7635211	2L_7635211_SNP [dm3] 2L_7635211_SNP [dm6]	C	T	1.419e^-4	0.856	UPSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	13785482	2R_13785482_SNP [dm3] 2R_17897977_SNP [dm6]	G	T	1.419e^-4	0.856	INTRON Elk	TF binding site BDTNP1_TFBS_twi
2R	11055426	2R_11055426_DEL [dm3] 2R_15167921_DEL [dm6]	TT	T	1.421e^-4	0.856	INTRON igl
2R	10622308	2R_10622308_SNP [dm3] 2R_14734803_SNP [dm6]	A	G	1.427e^-4	0.856	INTERGENIC
X	2897999	X_2897999_SNP [dm3] X_3003966_SNP [dm6]	G	A	1.428e^-4	0.856	INTRON kirre
3R	16189797	3R_16189797_INS [dm3] 3R_20364075_INS [dm6]	A	AAGTACAGGG	1.429e^-4	0.856	INTERGENIC
2R	10230163	2R_10230163_SNP [dm3] 2R_14342658_SNP [dm6]	T	A	1.429e^-4	0.856	INTRON Shroom	TF binding site mE1_TFBS_HSA
2R	10230171	2R_10230171_SNP [dm3] 2R_14342666_SNP [dm6]	T	C	1.429e^-4	0.856	INTRON Shroom	TF binding site mE1_TFBS_HSA
2L	11831468	2L_11831468_SNP [dm3] 2L_11831468_SNP [dm6]	A	T	1.439e^-4	0.856	INTRON Pde1c
3R	15957455	3R_15957455_SNP [dm3] 3R_20131733_SNP [dm6]	A	T	1.445e^-4	0.856	INTERGENIC
3R	22544567	3R_22544567_SNP [dm3] 3R_26718845_SNP [dm6]	G	C	1.448e^-4	0.856	SYNONYMOUS_CODING CG5484	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15488664	3R_15488664_SNP [dm3] 3R_19662942_SNP [dm6]	T	G	1.455e^-4	0.856	INTRON ort
X	589918	X_589918_SNP [dm3] X_695885_SNP [dm6]	C	T	1.455e^-4	0.856	INTRON sdk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	21283403	X_21283403_SNP [dm3] X_21412376_SNP [dm6]	G	A	1.466e^-4	0.856	INTERGENIC
2L	3160350	2L_3160350_SNP [dm3] 2L_3160350_SNP [dm6]	C	G	1.467e^-4	0.856	NON_SYNONYMOUS_CODING gkt UPSTREAM Mad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21877267	3R_21877267_SNP [dm3] 3R_26051545_SNP [dm6]	A	T	1.474e^-4	0.856	INTRON Exo84	TF binding site BDTNP1_TFBS_prd
3R	19836214	3R_19836214_SNP [dm3] 3R_24010492_SNP [dm6]	C	T	1.477e^-4	0.856	INTRON KrT95D
3R	19538896	3R_19538896_SNP [dm3] 3R_23713174_SNP [dm6]	A	T	1.491e^-4	0.856	UTR_3_PRIME CG10300 INTRON nau
X	21284028	X_21284028_SNP [dm3] X_21413001_SNP [dm6]	T	A	1.495e^-4	0.856	INTERGENIC
X	21284029	X_21284029_INS [dm3] X_21413002_INS [dm6]	A	AAACACCC	1.495e^-4	0.856	INTERGENIC
X	21284035	X_21284035_SNP [dm3] X_21413008_SNP [dm6]	C	T	1.495e^-4	0.856	INTERGENIC
X	8284653	X_8284653_SNP [dm3] X_8390620_SNP [dm6]	G	A	1.496e^-4	0.856	INTERGENIC
2L	7368577	2L_7368577_SNP [dm3] 2L_7368577_SNP [dm6]	G	T	1.499e^-4	0.856	INTRON Wnt10
3R	22738697	3R_22738697_SNP [dm3] 3R_26912975_SNP [dm6]	G	A	1.500e^-4	0.856	UPSTREAM Ets97D INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	8284672	X_8284672_SNP [dm3] X_8390639_SNP [dm6]	T	A	1.513e^-4	0.856	INTERGENIC
3R	25959490	3R_25959490_SNP [dm3] 3R_30133768_SNP [dm6]	T	C	1.513e^-4	0.856	SYNONYMOUS_CODING Tpi	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3160193	2L_3160193_SNP [dm3] 2L_3160193_SNP [dm6]	A	G	1.515e^-4	0.856	UPSTREAM Mad INTRON gkt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	9096347	2L_9096347_SNP [dm3] 2L_9096347_SNP [dm6]	T	C	1.516e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_sens
2R	13785447	2R_13785447_SNP [dm3] 2R_17897942_SNP [dm6]	T	C	1.521e^-4	0.856	INTRON Elk	TF binding site BDTNP1_TFBS_twi
2R	11015651	2R_11015651_SNP [dm3] 2R_15128146_SNP [dm6]	A	G	1.526e^-4	0.856	UPSTREAM chn INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11016220	2R_11016220_DEL [dm3] 2R_15128715_DEL [dm6]	TGCC	T	1.526e^-4	0.856	UPSTREAM chn INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	11016278	2R_11016278_SNP [dm3] 2R_15128773_SNP [dm6]	G	C	1.526e^-4	0.856	UPSTREAM chn INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
2R	9433907	2R_9433907_SNP [dm3] 2R_13546402_SNP [dm6]	C	T	1.528e^-4	0.856	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	17444024	2R_17444024_SNP [dm3] 2R_21556519_SNP [dm6]	C	T	1.532e^-4	0.856	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	583773	X_583773_SNP [dm3] X_689740_SNP [dm6]	T	C	1.538e^-4	0.856	INTRON sdk	TF binding site BDTNP1_TFBS_da
3L	15090953	3L_15090953_SNP [dm3] 3L_15097853_SNP [dm6]	A	T	1.545e^-4	0.856	UPSTREAM CTPsyn DOWNSTREAM CR43973 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	15171469	2R_15171469_SNP [dm3] 2R_19283964_SNP [dm6]	G	T	1.549e^-4	0.856	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6050857	2L_6050857_SNP [dm3] 2L_6050857_SNP [dm6]	C	A	1.550e^-4	0.856	UTR_5_PRIME CG9135 DOWNSTREAM CG12393	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8182259	2L_8182259_SNP [dm3] 2L_8182259_SNP [dm6]	G	T	1.553e^-4	0.856	DOWNSTREAM Piezo INTRON Piezo
X	8284674	X_8284674_SNP [dm3] X_8390641_SNP [dm6]	G	T	1.558e^-4	0.856	INTERGENIC
2R	11006032	2R_11006032_SNP [dm3] 2R_15118527_SNP [dm6]	T	A	1.563e^-4	0.856	INTRON chn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17450291	2R_17450291_SNP [dm3] 2R_21562786_SNP [dm6]	G	A	1.566e^-4	0.856	INTRON CG10440
2R	7560669	2R_7560669_SNP [dm3] 2R_11673164_SNP [dm6]	T	C	1.572e^-4	0.856	SYNONYMOUS_CODING Tret1-1 INTRON Roc2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	15957273	3R_15957273_SNP [dm3] 3R_20131551_SNP [dm6]	A	G	1.580e^-4	0.856	INTERGENIC
X	2729486	X_2729486_SNP [dm3] X_2835453_SNP [dm6]	T	C	1.580e^-4	0.856	INTRON kirre
2L	5099981	2L_5099981_SNP [dm3] 2L_5099981_SNP [dm6]	A	G	1.581e^-4	0.856	UPSTREAM Msp300 DOWNSTREAM CG4230 INTRON CG8680	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	6138077	2L_6138077_SNP [dm3] 2L_6138077_SNP [dm6]	G	A	1.589e^-4	0.856	DOWNSTREAM CR44824 INTERGENIC
X	6824684	X_6824684_SNP [dm3] X_6930651_SNP [dm6]	G	A	1.590e^-4	0.856	INTRON CG14431
2R	17908721	2R_17908721_SNP [dm3] 2R_22021216_SNP [dm6]	T	A	1.605e^-4	0.856	INTRON CG34370
3R	15957431	3R_15957431_SNP [dm3] 3R_20131709_SNP [dm6]	G	A	1.609e^-4	0.856	INTERGENIC
X	21284026	X_21284026_SNP [dm3] X_21412999_SNP [dm6]	C	G	1.616e^-4	0.856	INTERGENIC
X	586214	X_586214_SNP [dm3] X_692181_SNP [dm6]	C	A	1.619e^-4	0.856	INTRON sdk
2L	9086698	2L_9086698_SNP [dm3] 2L_9086698_SNP [dm6]	A	G	1.626e^-4	0.856	NON_SYNONYMOUS_CODING Toll-4
2R	15172934	2R_15172934_SNP [dm3] 2R_19285429_SNP [dm6]	A	G	1.647e^-4	0.856	UTR_3_PRIME CG10474 UPSTREAM CG10476
X	21172278	X_21172278_SNP [dm3] X_21301251_SNP [dm6]	A	C	1.648e^-4	0.856	INTRON CG1718
3L	15033545	3L_15033545_SNP [dm3] 3L_15040445_SNP [dm6]	C	T	1.654e^-4	0.856	INTRON Sytbeta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7541254	3L_7541254_SNP [dm3] 3L_7548154_SNP [dm6]	T	C	1.659e^-4	0.856	INTERGENIC
3L	3449271	3L_3449271_MNP [dm3] 3L_3449271_MNP [dm6]	AAT	TTA	1.670e^-4	0.856	INTRON eIF5B
3L	3449290	3L_3449290_SNP [dm3] 3L_3449290_SNP [dm6]	A	T	1.670e^-4	0.856	INTRON eIF5B
2L	6337522	2L_6337522_SNP [dm3] 2L_6337522_SNP [dm6]	C	T	1.671e^-4	0.856	INTRON Pez	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16701812	2R_16701812_SNP [dm3] 2R_20814307_SNP [dm6]	G	T	1.681e^-4	0.856	INTERGENIC
3R	2555262	3R_2555262_SNP [dm3] 3R_6729540_SNP [dm6]	A	G	1.686e^-4	0.856	INTRON pb	regulatory region FlyBase REDfly_CRMs
3L	15090975	3L_15090975_SNP [dm3] 3L_15097875_SNP [dm6]	A	T	1.692e^-4	0.856	UPSTREAM CTPsyn DOWNSTREAM CR43973 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	6828864	3L_6828864_SNP [dm3] 3L_6835764_SNP [dm6]	C	T	1.710e^-4	0.856	INTERGENIC
3R	15957390	3R_15957390_SNP [dm3] 3R_20131668_SNP [dm6]	A	G	1.712e^-4	0.856	INTERGENIC
X	2898027	X_2898027_SNP [dm3] X_3003994_SNP [dm6]	G	C	1.716e^-4	0.856	INTRON kirre
3R	21691347	3R_21691347_SNP [dm3] 3R_25865625_SNP [dm6]	C	T	1.717e^-4	0.856	INTRON CG5890
X	3543680	X_3543680_SNP [dm3] X_3649647_SNP [dm6]	A	T	1.725e^-4	0.856	INTRON AstA-R1
3R	15957387	3R_15957387_SNP [dm3] 3R_20131665_SNP [dm6]	C	T	1.726e^-4	0.856	INTERGENIC
2R	7504317	2R_7504317_SNP [dm3] 2R_11616812_SNP [dm6]	C	T	1.727e^-4	0.856	UPSTREAM tou DOWNSTREAM Egm & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb mE1_TFBS_Trl
3R	2388663	3R_2388663_SNP [dm3] 3R_6562941_SNP [dm6]	A	C	1.733e^-4	0.856	INTRON dpr11
X	523144	X_523144_SNP [dm3] X_629111_SNP [dm6]	T	C	1.734e^-4	0.856	UPSTREAM l_1_1Bi & 1 other INTRON RpL36	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9104306	2L_9104306_SNP [dm3] 2L_9104306_SNP [dm6]	C	T	1.734e^-4	0.856	INTERGENIC
3R	15953617	3R_15953617_SNP [dm3] 3R_20127895_SNP [dm6]	T	C	1.743e^-4	0.856	INTERGENIC
X	580442	X_580442_SNP [dm3] X_686409_SNP [dm6]	A	C	1.756e^-4	0.856	UPSTREAM sdk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2R	17448424	2R_17448424_SNP [dm3] 2R_21560919_SNP [dm6]	A	T	1.759e^-4	0.856	UTR_3_PRIME CG10440 DOWNSTREAM Egfr	TF binding site mE1_TFBS_chinmo
2L	11787544	2L_11787544_SNP [dm3] 2L_11787544_SNP [dm6]	A	G	1.770e^-4	0.856	UPSTREAM CG14931 INTERGENIC
X	10299118	X_10299118_INS [dm3] X_10405085_INS [dm6]	A	AAATGAATT	1.771e^-4	0.856	INTRON flw
3L	6938568	3L_6938568_INS [dm3] 3L_6945468_INS [dm6]	T	TT	1.771e^-4	0.856	INTRON tow	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	16960245	2R_16960245_SNP [dm3] 2R_21072740_SNP [dm6]	C	T	1.771e^-4	0.856	UTR_5_PRIME CG10527 DOWNSTREAM CR44704	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	21603487	3L_21603487_SNP [dm3] 3L_21610387_SNP [dm6]	G	A	1.776e^-4	0.856	INTRON TfAP-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14430310	3L_14430310_SNP [dm3] 3L_14437210_SNP [dm6]	A	G	1.778e^-4	0.856	INTRON bbg
2L	5125509	2L_5125509_SNP [dm3] 2L_5125509_SNP [dm6]	C	T	1.783e^-4	0.856	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	517668	X_517668_SNP [dm3] X_623635_SNP [dm6]	A	G	1.785e^-4	0.856	UTR_5_PRIME CG13369 DOWNSTREAM mod_r_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	10927622	X_10927622_SNP [dm3] X_11033589_SNP [dm6]	G	A	1.787e^-4	0.856	INTRON CG42339
2R	11006028	2R_11006028_SNP [dm3] 2R_15118523_SNP [dm6]	C	T	1.791e^-4	0.856	INTRON chn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8527671	2R_8527671_SNP [dm3] 2R_12640166_SNP [dm6]	A	G	1.792e^-4	0.856	SYNONYMOUS_CODING Iswi DOWNSTREAM CG8785	TF binding site mE1_TFBS_cad
2L	11964977	2L_11964977_SNP [dm3] 2L_11964977_SNP [dm6]	A	T	1.796e^-4	0.856	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	21283758	X_21283758_SNP [dm3] X_21412731_SNP [dm6]	C	T	1.797e^-4	0.856	INTERGENIC
3R	24269085	3R_24269085_SNP [dm3] 3R_28443363_SNP [dm6]	A	T	1.797e^-4	0.856	INTRON beat-VI
2R	11388898	2R_11388898_SNP [dm3] 2R_15501393_SNP [dm6]	G	A	1.804e^-4	0.856	NON_SYNONYMOUS_CODING Ir52a UPSTREAM Ir52b
3R	20740169	3R_20740169_SNP [dm3] 3R_24914447_SNP [dm6]	A	G	1.811e^-4	0.856	SPLICE_SITE_REGION PIG-S UPSTREAM tRNA:CR31382 DOWNSTREAM CR44267 & 1 other INTRON PIG-S
2R	7504239	2R_7504239_INS [dm3] 2R_11616734_INS [dm6]	T	TC	1.811e^-4	0.856	UPSTREAM tou DOWNSTREAM Egm & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb mE1_TFBS_Trl
X	17733138	X_17733138_SNP [dm3] X_17839105_SNP [dm6]	G	A	1.812e^-4	0.856	INTRON CG6398	TF binding site BDTNP1_TFBS_da mE1_TFBS_D mE1_TFBS_HSA
3L	3024461	3L_3024461_SNP [dm3] 3L_3024461_SNP [dm6]	A	T	1.812e^-4	0.856	UTR_3_PRIME aly DOWNSTREAM aly
2L	12889245	2L_12889245_SNP [dm3] 2L_12889245_SNP [dm6]	C	A	1.815e^-4	0.856	INTERGENIC
2L	17840436	2L_17840436_SNP [dm3] 2L_17840436_SNP [dm6]	G	A	1.817e^-4	0.856	INTRON CadN2
X	6693330	X_6693330_SNP [dm3] X_6799297_SNP [dm6]	A	T	1.822e^-4	0.856	INTRON C3G
3L	14281367	3L_14281367_SNP [dm3] 3L_14288267_SNP [dm6]	T	A	1.832e^-4	0.856	INTRON fz	TF binding site mE1_TFBS_HSA
3R	14691312	3R_14691312_SNP [dm3] 3R_18865590_SNP [dm6]	T	C	1.836e^-4	0.856	INTERGENIC
2L	19141527	2L_19141527_SNP [dm3] 2L_19141527_SNP [dm6]	G	T	1.840e^-4	0.856	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2729487	X_2729487_INS [dm3] X_2835454_INS [dm6]	A	AGG	1.845e^-4	0.856	INTRON kirre
X	2729491	X_2729491_DEL [dm3] X_2835458_DEL [dm6]	GGC	G	1.845e^-4	0.856	INTRON kirre
X	2729494	X_2729494_DEL [dm3] X_2835461_DEL [dm6]	ATT	A	1.845e^-4	0.856	INTRON kirre
X	2729498	X_2729498_SNP [dm3] X_2835465_SNP [dm6]	G	A	1.845e^-4	0.856	INTRON kirre
X	2729500	X_2729500_DEL [dm3] X_2835467_DEL [dm6]	AG	A	1.845e^-4	0.856	INTRON kirre
3R	21513160	3R_21513160_INS [dm3] 3R_25687438_INS [dm6]	T	TAT	1.846e^-4	0.856	UPSTREAM CLS INTERGENIC	TF binding site mE1_TFBS_cad
3L	3449276	3L_3449276_SNP [dm3] 3L_3449276_SNP [dm6]	A	C	1.852e^-4	0.856	INTRON eIF5B
2R	11017093	2R_11017093_SNP [dm3] 2R_15129588_SNP [dm6]	G	A	1.855e^-4	0.856	INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	15154219	2L_15154219_SNP [dm3] 2L_15154219_SNP [dm6]	G	A	1.868e^-4	0.856	INTERGENIC
3R	19826648	3R_19826648_SNP [dm3] 3R_24000926_SNP [dm6]	T	G	1.869e^-4	0.856	INTRON KrT95D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9130774	2L_9130774_SNP [dm3] 2L_9130774_SNP [dm6]	T	C	1.874e^-4	0.856	INTRON CG32982
3L	4177355	3L_4177355_SNP [dm3] 3L_4177355_SNP [dm6]	G	C	1.877e^-4	0.856	SYNONYMOUS_CODING Teh4 INTRON CG18675
3L	3134135	3L_3134135_SNP [dm3] 3L_3134135_SNP [dm6]	C	A	1.880e^-4	0.856	UTR_5_PRIME CG11537 INTRON CG11537
2L	9130548	2L_9130548_SNP [dm3] 2L_9130548_SNP [dm6]	A	G	1.880e^-4	0.856	INTRON CG32982	TF binding site BDTNP1_TFBS_twi
3L	15090951	3L_15090951_SNP [dm3] 3L_15097851_SNP [dm6]	G	C	1.880e^-4	0.856	UPSTREAM CTPsyn DOWNSTREAM CR43973 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	12833532	2R_12833532_SNP [dm3] 2R_16946027_SNP [dm6]	T	C	1.882e^-4	0.856	SYNONYMOUS_CODING CG15614 DOWNSTREAM Pkc53E & 1 other	TF binding site mE1_TFBS_HSA
2R	15172957	2R_15172957_SNP [dm3] 2R_19285452_SNP [dm6]	G	T	1.887e^-4	0.856	UTR_3_PRIME CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
3R	21730755	3R_21730755_SNP [dm3] 3R_25905033_SNP [dm6]	A	T	1.894e^-4	0.856	DOWNSTREAM CG31089 & 1 other INTRON CR43259
2R	6871949	2R_6871949_SNP [dm3] 2R_10984444_SNP [dm6]	G	T	1.905e^-4	0.856	INTRON luna
3R	21513170	3R_21513170_DEL [dm3] 3R_25687448_DEL [dm6]	TATGAGTT	T	1.908e^-4	0.856	UPSTREAM CLS INTERGENIC	TF binding site mE1_TFBS_cad
3R	21756236	3R_21756236_SNP [dm3] 3R_25930514_SNP [dm6]	A	T	1.915e^-4	0.856	UPSTREAM CR34024 INTRON CCAP-R	TF binding site mE1_TFBS_inv
2L	6137956	2L_6137956_SNP [dm3] 2L_6137956_SNP [dm6]	A	G	1.918e^-4	0.856	DOWNSTREAM CR44824 INTERGENIC
3L	12648845	3L_12648845_SNP [dm3] 3L_12655745_SNP [dm6]	T	C	1.918e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14104771	2R_14104771_SNP [dm3] 2R_18217266_SNP [dm6]	G	A	1.924e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2457137	3L_2457137_SNP [dm3] 3L_2457137_SNP [dm6]	C	A	1.925e^-4	0.856	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25962853	3R_25962853_SNP [dm3] 3R_30137131_SNP [dm6]	A	T	1.947e^-4	0.856	SYNONYMOUS_CODING AdoR	TF binding site mE1_TFBS_cad
X	12430006	X_12430006_DEL [dm3] X_12535973_DEL [dm6]	AGAC	G	1.951e^-4	0.856	INTRON CG43921
X	554818	X_554818_INS [dm3] X_660785_INS [dm6]	C	CTAACTATTT	1.955e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21713643	3R_21713643_SNP [dm3] 3R_25887921_SNP [dm6]	A	C	1.982e^-4	0.856	UTR_3_PRIME SppL UPSTREAM Lnk DOWNSTREAM SppL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1
2R	6768912	2R_6768912_SNP [dm3] 2R_10881407_SNP [dm6]	T	C	1.986e^-4	0.856	SYNONYMOUS_CODING Pex6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19120026	2L_19120026_SNP [dm3] 2L_19120026_SNP [dm6]	C	A	1.991e^-4	0.856	UTR_5_PRIME Ddc INTRON Ddc	regulatory region REDfly_CRMs
3R	22882498	3R_22882498_SNP [dm3] 3R_27056776_SNP [dm6]	G	A	1.993e^-4	0.856	SPLICE_SITE_REGION RYa-R INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15546807	3R_15546807_SNP [dm3] 3R_19721085_SNP [dm6]	T	G	2.000e^-4	0.856	INTERGENIC
3R	12969425	3R_12969425_SNP [dm3] 3R_17143703_SNP [dm6]	C	T	2.007e^-4	0.856	DOWNSTREAM m-cup INTERGENIC
2R	14681349	2R_14681349_SNP [dm3] 2R_18793844_SNP [dm6]	T	C	2.008e^-4	0.856	SYNONYMOUS_CODING CG15080 DOWNSTREAM MFS15	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2729462	X_2729462_SNP [dm3] X_2835429_SNP [dm6]	C	A	2.008e^-4	0.856	INTRON kirre
2L	1616709	2L_1616709_SNP [dm3] 2L_1616709_SNP [dm6]	G	C	2.012e^-4	0.856	INTERGENIC
2L	12884326	2L_12884326_SNP [dm3] 2L_12884326_SNP [dm6]	C	G	2.014e^-4	0.856	INTERGENIC
2R	10231641	2R_10231641_SNP [dm3] 2R_14344136_SNP [dm6]	C	G	2.016e^-4	0.856	INTRON Shroom
3L	13595776	3L_13595776_SNP [dm3] 3L_13602676_SNP [dm6]	G	T	2.023e^-4	0.856	INTRON bru-3
3R	22564669	3R_22564669_SNP [dm3] 3R_26738947_SNP [dm6]	T	C	2.024e^-4	0.856	DOWNSTREAM CG14247 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	3160399	2L_3160399_SNP [dm3] 2L_3160399_SNP [dm6]	T	C	2.041e^-4	0.856	SYNONYMOUS_CODING gkt UPSTREAM Mad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13566741	X_13566741_SNP [dm3] X_13672708_SNP [dm6]	A	G	2.047e^-4	0.856	SYNONYMOUS_CODING CG15760 INTRON CG15760	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	18900023	X_18900023_SNP [dm3] X_19005990_SNP [dm6]	G	A	2.054e^-4	0.856	INTRON CG43759
3R	13812357	3R_13812357_DEL [dm3] 3R_17986635_DEL [dm6]	AAAAA	A	2.056e^-4	0.856	INTRON cpo
3R	22543998	3R_22543998_SNP [dm3] 3R_26718276_SNP [dm6]	G	T	2.075e^-4	0.856	UPSTREAM CG6425 INTRON CG5484	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7558481	3L_7558481_SNP [dm3] 3L_7565381_SNP [dm6]	C	G	2.078e^-4	0.856	NON_SYNONYMOUS_CODING frac
3L	18279210	3L_18279210_SNP [dm3] 3L_18286110_SNP [dm6]	G	C	2.082e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	15090293	3L_15090293_SNP [dm3] 3L_15097193_SNP [dm6]	G	T	2.084e^-4	0.856	SYNONYMOUS_CODING Aats-gly UPSTREAM CTPsyn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8970913	2R_8970913_SNP [dm3] 2R_13083408_SNP [dm6]	C	T	2.086e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22813380	3R_22813380_SNP [dm3] 3R_26987658_SNP [dm6]	G	T	2.087e^-4	0.856	UPSTREAM CG31075 INTRON CG31075
3R	22793148	3R_22793148_SNP [dm3] 3R_26967426_SNP [dm6]	A	G	2.093e^-4	0.856	UTR_5_PRIME CG5521 UPSTREAM Gr97a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10646062	2R_10646062_SNP [dm3] 2R_14758557_SNP [dm6]	A	C	2.093e^-4	0.856	NON_SYNONYMOUS_CODING CG12857 SYNONYMOUS_CODING CG12857 UPSTREAM Trs31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	17200932	X_17200932_INS [dm3] X_17306899_INS [dm6]	C	CC	2.098e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11367467	2R_11367467_DEL [dm3] 2R_15479962_DEL [dm6]	GCTACTCTAG	G	2.106e^-4	0.856	INTRON CG8180	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12754852	2L_12754852_SNP [dm3] 2L_12754852_SNP [dm6]	C	T	2.110e^-4	0.856	INTERGENIC
3R	26817363	3R_26817363_SNP [dm3] 3R_30991641_SNP [dm6]	C	G	2.117e^-4	0.856	DOWNSTREAM CG31007 INTRON 5-HT7
3L	19118851	3L_19118851_SNP [dm3] 3L_19125751_SNP [dm6]	C	T	2.121e^-4	0.856	INTRON CG14082
3R	24280825	3R_24280825_SNP [dm3] 3R_28455103_SNP [dm6]	A	G	2.126e^-4	0.856	INTRON beat-VI
3L	15091133	3L_15091133_SNP [dm3] 3L_15098033_SNP [dm6]	T	A	2.130e^-4	0.856	UTR_5_PRIME CTPsyn UPSTREAM CTPsyn DOWNSTREAM CR43973 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	3448762	3L_3448762_SNP [dm3] 3L_3448762_SNP [dm6]	G	A	2.137e^-4	0.856	INTRON eIF5B
2L	18871899	2L_18871899_SNP [dm3] 2L_18871899_SNP [dm6]	T	C	2.138e^-4	0.856	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1616644	2L_1616644_SNP [dm3] 2L_1616644_SNP [dm6]	G	A	2.142e^-4	0.856	INTERGENIC
2L	3477914	2L_3477914_SNP [dm3] 2L_3477914_SNP [dm6]	A	G	2.157e^-4	0.856	UPSTREAM Thor DOWNSTREAM CR43928 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2729466	X_2729466_SNP [dm3] X_2835433_SNP [dm6]	G	T	2.172e^-4	0.856	INTRON kirre
3R	26088405	3R_26088405_SNP [dm3] 3R_30262683_SNP [dm6]	G	A	2.180e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_Kr
X	6642480	X_6642480_SNP [dm3] X_6748447_SNP [dm6]	G	A	2.182e^-4	0.856	UPSTREAM CR44964 INTRON CG14439
X	16295584	X_16295584_SNP [dm3] X_16401551_SNP [dm6]	G	C	2.183e^-4	0.856	NON_SYNONYMOUS_CODING CG9981	TF binding site mE1_TFBS_HSA
3R	15951578	3R_15951578_SNP [dm3] 3R_20125856_SNP [dm6]	C	A	2.186e^-4	0.856	INTERGENIC
2R	13807014	2R_13807014_SNP [dm3] 2R_17919509_SNP [dm6]	C	T	2.216e^-4	0.856	INTRON Elk
X	17171422	X_17171422_SNP [dm3] X_17277389_SNP [dm6]	A	G	2.237e^-4	0.856	INTRON f
3L	10489532	3L_10489532_SNP [dm3] 3L_10496432_SNP [dm6]	A	G	2.237e^-4	0.856	INTRON A2bp1
X	8041515	X_8041515_SNP [dm3] X_8147482_SNP [dm6]	A	G	2.245e^-4	0.856	UTR_3_PRIME CG2129 UPSTREAM CG15336	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	17747834	3L_17747834_INS [dm3] 3L_17754734_INS [dm6]	A	AA	2.254e^-4	0.856	DOWNSTREAM Msi INTRON Adgf-A
2L	7422154	2L_7422154_SNP [dm3] 2L_7422154_SNP [dm6]	A	G	2.256e^-4	0.856	UTR_3_PRIME chm	TF binding site BDTNP1_TFBS_dl
2R	11388899	2R_11388899_SNP [dm3] 2R_15501394_SNP [dm6]	G	A	2.267e^-4	0.856	NON_SYNONYMOUS_CODING Ir52a UPSTREAM Ir52b
2R	14681355	2R_14681355_SNP [dm3] 2R_18793850_SNP [dm6]	G	T	2.269e^-4	0.856	SYNONYMOUS_CODING CG15080 DOWNSTREAM MFS15	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17733107	X_17733107_SNP [dm3] X_17839074_SNP [dm6]	A	G	2.284e^-4	0.856	INTRON CG6398	TF binding site mE1_TFBS_HSA
3R	5221840	3R_5221840_SNP [dm3] 3R_9396118_SNP [dm6]	T	C	2.287e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6048254	2L_6048254_SNP [dm3] 2L_6048254_SNP [dm6]	C	T	2.300e^-4	0.856	SYNONYMOUS_CODING CG34179 UTR_5_PRIME slmo & 1 other UPSTREAM CG12393 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10393864	3L_10393864_SNP [dm3] 3L_10400764_SNP [dm6]	T	A	2.306e^-4	0.856	INTERGENIC
2L	12908775	2L_12908775_SNP [dm3] 2L_12908775_SNP [dm6]	T	C	2.307e^-4	0.856	INTERGENIC
X	559552	X_559552_SNP [dm3] X_665519_SNP [dm6]	G	T	2.307e^-4	0.856	INTERGENIC	transposable element FlyBase
3L	8553458	3L_8553458_DEL [dm3] 3L_8560358_DEL [dm6]	TCGT	C	2.311e^-4	0.856	INTRON rhea	TF binding site mE1_TFBS_Trl
3R	15710930	3R_15710930_SNP [dm3] 3R_19885208_SNP [dm6]	G	A	2.312e^-4	0.856	NON_SYNONYMOUS_CODING Pk92B
3L	17173022	3L_17173022_SNP [dm3] 3L_17179922_SNP [dm6]	C	T	2.314e^-4	0.856	INTRON Rbp6
3R	14574295	3R_14574295_SNP [dm3] 3R_18748573_SNP [dm6]	C	A	2.317e^-4	0.856	INTRON gwl	TF binding site mE1_TFBS_cad
3R	25516447	3R_25516447_SNP [dm3] 3R_29690725_SNP [dm6]	A	G	2.340e^-4	0.856	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	19180220	2L_19180220_SNP [dm3] 2L_19180220_SNP [dm6]	A	G	2.346e^-4	0.856	SYNONYMOUS_CODING CG17568 DOWNSTREAM brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12869315	X_12869315_SNP [dm3] X_12975282_SNP [dm6]	G	T	2.348e^-4	0.856	SYNONYMOUS_CODING CG12716 UPSTREAM CR43152
X	6824673	X_6824673_SNP [dm3] X_6930640_SNP [dm6]	A	G	2.348e^-4	0.856	INTRON CG14431
X	6323322	X_6323322_SNP [dm3] X_6429289_SNP [dm6]	A	G	2.349e^-4	0.856	INTRON CG42340
X	6980780	X_6980780_SNP [dm3] X_7086747_SNP [dm6]	C	T	2.351e^-4	0.856	UPSTREAM mir-4956 INTRON Sxl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6981054	X_6981054_SNP [dm3] X_7087021_SNP [dm6]	A	T	2.351e^-4	0.856	INTRON Sxl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
X	6994281	X_6994281_SNP [dm3] X_7100248_SNP [dm6]	G	A	2.351e^-4	0.856	INTRON CG4615	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1615680	2L_1615680_SNP [dm3] 2L_1615680_SNP [dm6]	C	T	2.355e^-4	0.856	INTERGENIC
2L	9085844	2L_9085844_SNP [dm3] 2L_9085844_SNP [dm6]	C	T	2.362e^-4	0.856	INTRON Toll-4
2L	5109916	2L_5109916_SNP [dm3] 2L_5109916_SNP [dm6]	G	A	2.368e^-4	0.856	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22555175	3R_22555175_SNP [dm3] 3R_26729453_SNP [dm6]	C	T	2.371e^-4	0.856	DOWNSTREAM CG14245 INTRON CG14246
3R	15957415	3R_15957415_SNP [dm3] 3R_20131693_SNP [dm6]	G	A	2.377e^-4	0.856	INTERGENIC
2R	7528497	2R_7528497_SNP [dm3] 2R_11640992_SNP [dm6]	C	T	2.379e^-4	0.856	UPSTREAM CG9005 DOWNSTREAM CG9003 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	5152225	3L_5152225_SNP [dm3] 3L_5159125_SNP [dm6]	G	A	2.379e^-4	0.856	UTR_3_PRIME shep
3R	25928248	3R_25928248_SNP [dm3] 3R_30102526_SNP [dm6]	T	G	2.380e^-4	0.856	INTRON sima	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	20796949	3R_20796949_SNP [dm3] 3R_24971227_SNP [dm6]	A	C	2.380e^-4	0.856	INTERGENIC
X	8041527	X_8041527_SNP [dm3] X_8147494_SNP [dm6]	T	A	2.380e^-4	0.856	UTR_3_PRIME CG2129 UPSTREAM CG15336	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	21284044	X_21284044_INS [dm3] X_21413017_INS [dm6]	T	TCATATAATAT...	2.381e^-4	0.856	INTERGENIC
2R	15171546	2R_15171546_SNP [dm3] 2R_19284041_SNP [dm6]	T	G	2.382e^-4	0.856	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2L	744789	2L_744789_SNP [dm3] 2L_744789_SNP [dm6]	A	G	2.385e^-4	0.856	UPSTREAM Eaat2 INTERGENIC
X	623245	X_623245_SNP [dm3] X_729212_SNP [dm6]	T	C	2.387e^-4	0.856	INTRON sdk
X	559604	X_559604_SNP [dm3] X_665571_SNP [dm6]	T	C	2.391e^-4	0.856	INTERGENIC	transposable element FlyBase
2R	12268318	2R_12268318_SNP [dm3] 2R_16380813_SNP [dm6]	C	T	2.394e^-4	0.856	UPSTREAM CR45317 DOWNSTREAM CR45316 INTRON CG43187
2L	5906941	2L_5906941_SNP [dm3] 2L_5906941_SNP [dm6]	A	T	2.398e^-4	0.856	UPSTREAM bchs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9130685	2L_9130685_SNP [dm3] 2L_9130685_SNP [dm6]	G	A	2.407e^-4	0.856	INTRON CG32982
3R	26031213	3R_26031213_SNP [dm3] 3R_30205491_SNP [dm6]	T	C	2.421e^-4	0.856	DOWNSTREAM RpS7 INTERGENIC
3R	26031223	3R_26031223_DEL [dm3] 3R_30205501_DEL [dm6]	TGGT	T	2.421e^-4	0.856	DOWNSTREAM RpS7 INTERGENIC
3R	26031238	3R_26031238_SNP [dm3] 3R_30205516_SNP [dm6]	T	C	2.421e^-4	0.856	DOWNSTREAM RpS7 INTERGENIC
X	560352	X_560352_SNP [dm3] X_666319_SNP [dm6]	A	G	2.423e^-4	0.856	INTERGENIC
3L	15093303	3L_15093303_SNP [dm3] 3L_15100203_SNP [dm6]	C	T	2.427e^-4	0.856	UPSTREAM CR43973 INTRON CTPsyn EXON CR43972	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	6323323	X_6323323_SNP [dm3] X_6429290_SNP [dm6]	C	A	2.428e^-4	0.856	INTRON CG42340
2L	7716657	2L_7716657_SNP [dm3] 2L_7716657_SNP [dm6]	A	T	2.441e^-4	0.856	UPSTREAM CG33296 DOWNSTREAM CG13793 INTERGENIC
2L	12906815	2L_12906815_SNP [dm3] 2L_12906815_SNP [dm6]	G	A	2.447e^-4	0.856	INTERGENIC
3L	8252302	3L_8252302_SNP [dm3] 3L_8259202_SNP [dm6]	C	G	2.447e^-4	0.856	INTRON Dscam4
3L	4350678	3L_4350678_SNP [dm3] 3L_4350678_SNP [dm6]	G	A	2.449e^-4	0.856	INTRON Cip4
2R	11400697	2R_11400697_DEL [dm3] 2R_15513192_DEL [dm6]	ATATTTATTTATA...	A	2.449e^-4	0.856	UPSTREAM GalNAc-T1 INTRON GalNAc-T1
X	526109	X_526109_SNP [dm3] X_632076_SNP [dm6]	T	C	2.450e^-4	0.856	SYNONYMOUS_CODING l_1_1Bi	TF binding site mE1_TFBS_sens
X	4588793	X_4588793_SNP [dm3] X_4694760_SNP [dm6]	C	T	2.456e^-4	0.856	INTRON ctp	TF binding site mE1_TFBS_Trl
2L	19412618	2L_19412618_SNP [dm3] 2L_19412618_SNP [dm6]	T	C	2.460e^-4	0.856	UPSTREAM Pax INTRON Pax
3L	4178215	3L_4178215_SNP [dm3] 3L_4178215_SNP [dm6]	G	A	2.460e^-4	0.856	UTR_5_PRIME Teh4 DOWNSTREAM Teh2 INTRON CG18675
3R	24269065	3R_24269065_SNP [dm3] 3R_28443343_SNP [dm6]	A	T	2.464e^-4	0.856	INTRON beat-VI
3L	15768714	3L_15768714_SNP [dm3] 3L_15775614_SNP [dm6]	G	A	2.468e^-4	0.856	INTERGENIC
X	21945985	X_21945985_SNP [dm3] X_22544149_SNP [dm6]	A	G	2.472e^-4	0.856	INTRON CG17599
X	525878	X_525878_SNP [dm3] X_631845_SNP [dm6]	C	G	2.473e^-4	0.856	SYNONYMOUS_CODING l_1_1Bi
2L	2378650	2L_2378650_SNP [dm3] 2L_2378650_SNP [dm6]	G	A	2.479e^-4	0.856	SYNONYMOUS_CODING Atxn7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15952506	3R_15952506_SNP [dm3] 3R_20126784_SNP [dm6]	C	G	2.480e^-4	0.856	INTERGENIC
2L	12673395	2L_12673395_SNP [dm3] 2L_12673395_SNP [dm6]	C	A	2.486e^-4	0.856	NON_SYNONYMOUS_CODING pdm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15631548	2L_15631548_SNP [dm3] 2L_15631548_SNP [dm6]	C	T	2.487e^-4	0.856	SYNONYMOUS_CODING CG18480	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11407272	2R_11407272_SNP [dm3] 2R_15519767_SNP [dm6]	T	G	2.487e^-4	0.856	NON_SYNONYMOUS_CODING Khc-73
3R	15957229	3R_15957229_INS [dm3] 3R_20131507_INS [dm6]	G	GGTTTCTC	2.492e^-4	0.856	INTERGENIC
2L	5096193	2L_5096193_SNP [dm3] 2L_5096193_SNP [dm6]	G	T	2.495e^-4	0.856	UPSTREAM CG4230 DOWNSTREAM CG5828 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
X	581695	X_581695_SNP [dm3] X_687662_SNP [dm6]	A	G	2.497e^-4	0.856	UTR_5_PRIME sdk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6986571	X_6986571_SNP [dm3] X_7092538_SNP [dm6]	A	G	2.504e^-4	0.856	INTRON Sxl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	4178234	3L_4178234_SNP [dm3] 3L_4178234_SNP [dm6]	G	T	2.511e^-4	0.856	UTR_5_PRIME Teh4 DOWNSTREAM Teh2 INTRON CG18675
3R	15488747	3R_15488747_SNP [dm3] 3R_19663025_SNP [dm6]	T	C	2.517e^-4	0.856	INTRON ort
3R	25957945	3R_25957945_SNP [dm3] 3R_30132223_SNP [dm6]	C	A	2.519e^-4	0.856	UTR_5_PRIME CG31029 DOWNSTREAM Tpi
3R	21379784	3R_21379784_SNP [dm3] 3R_25554062_SNP [dm6]	G	T	2.520e^-4	0.856	INTRON msi
3R	15953903	3R_15953903_SNP [dm3] 3R_20128181_SNP [dm6]	C	T	2.526e^-4	0.856	INTERGENIC
3R	21379783	3R_21379783_SNP [dm3] 3R_25554061_SNP [dm6]	T	G	2.538e^-4	0.856	INTRON msi
2L	1892860	2L_1892860_INS [dm3] 2L_1892860_INS [dm6]	T	TTTT	2.540e^-4	0.856	INTRON CG7337
3L	22643183	3L_22643183_SNP [dm3] 3L_22650083_SNP [dm6]	G	C	2.543e^-4	0.856	DOWNSTREAM CG33770 & 1 other INTERGENIC
3R	15701020	3R_15701020_SNP [dm3] 3R_19875298_SNP [dm6]	G	C	2.548e^-4	0.856	UPSTREAM CG4562 DOWNSTREAM CG17186 INTRON CG4562	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	15702177	3R_15702177_SNP [dm3] 3R_19876455_SNP [dm6]	C	T	2.548e^-4	0.856	NON_SYNONYMOUS_CODING CG17186 UPSTREAM CG4562	TF binding site mE1_TFBS_sens
3L	15093498	3L_15093498_SNP [dm3] 3L_15100398_SNP [dm6]	G	A	2.550e^-4	0.856	UPSTREAM CR43973 INTRON CTPsyn EXON CR43972	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	583569	X_583569_SNP [dm3] X_689536_SNP [dm6]	C	T	2.551e^-4	0.856	INTRON sdk	TF binding site BDTNP1_TFBS_da
3R	18688365	3R_18688365_SNP [dm3] 3R_22862643_SNP [dm6]	C	T	2.560e^-4	0.856	INTERGENIC
2L	9136300	2L_9136300_SNP [dm3] 2L_9136300_SNP [dm6]	A	T	2.561e^-4	0.856	INTRON CG32982
2R	6975930	2R_6975930_SNP [dm3] 2R_11088425_SNP [dm6]	T	C	2.566e^-4	0.856	DOWNSTREAM CG43188 INTRON luna
2R	12439391	2R_12439391_SNP [dm3] 2R_16551886_SNP [dm6]	A	T	2.566e^-4	0.856	UPSTREAM Syn2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9073128	2L_9073128_SNP [dm3] 2L_9073128_SNP [dm6]	G	C	2.569e^-4	0.856	INTERGENIC
2L	9085819	2L_9085819_SNP [dm3] 2L_9085819_SNP [dm6]	A	T	2.586e^-4	0.856	INTRON Toll-4
X	17481279	X_17481279_DEL [dm3] X_17587246_DEL [dm6]	GCGTGCC	G	2.589e^-4	0.856	INTRON CG12991
3L	18080151	3L_18080151_SNP [dm3] 3L_18087051_SNP [dm6]	T	G	2.590e^-4	0.856	INTRON CG34253 EXON CR32194
X	1091941	X_1091941_SNP [dm3] X_1197908_SNP [dm6]	A	C	2.596e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9130680	2L_9130680_SNP [dm3] 2L_9130680_SNP [dm6]	T	C	2.596e^-4	0.856	INTRON CG32982
3R	19379510	3R_19379510_SNP [dm3] 3R_23553788_SNP [dm6]	C	A	2.614e^-4	0.856	DOWNSTREAM CG10164 INTERGENIC
3R	23802608	3R_23802608_SNP [dm3] 3R_27976886_SNP [dm6]	A	C	2.620e^-4	0.856	INTRON betaTub97EF
3L	3449407	3L_3449407_SNP [dm3] 3L_3449407_SNP [dm6]	T	C	2.627e^-4	0.856	INTRON eIF5B
2L	12756386	2L_12756386_SNP [dm3] 2L_12756386_SNP [dm6]	T	C	2.654e^-4	0.856	INTERGENIC
3L	13142683	3L_13142683_SNP [dm3] 3L_13149583_SNP [dm6]	C	T	2.656e^-4	0.856	INTERGENIC
3R	25602471	3R_25602471_SNP [dm3] 3R_29776749_SNP [dm6]	C	G	2.663e^-4	0.856	INTRON kay
3L	18281584	3L_18281584_SNP [dm3] 3L_18288484_SNP [dm6]	A	T	2.665e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	15947865	3R_15947865_SNP [dm3] 3R_20122143_SNP [dm6]	C	A	2.675e^-4	0.856	SYNONYMOUS_CODING Gr92a
3L	5327186	3L_5327186_SNP [dm3] 3L_5334086_SNP [dm6]	A	G	2.676e^-4	0.856	UPSTREAM CR45742 INTERGENIC
3R	21877257	3R_21877257_SNP [dm3] 3R_26051535_SNP [dm6]	G	A	2.677e^-4	0.856	SPLICE_SITE_REGION Exo84 INTRON Exo84	TF binding site BDTNP1_TFBS_prd
2L	1322650	2L_1322650_DEL [dm3] 2L_1322650_DEL [dm6]	TT	T	2.683e^-4	0.856	INTERGENIC
3R	10172747	3R_10172747_SNP [dm3] 3R_14347025_SNP [dm6]	A	G	2.689e^-4	0.856	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11016090	2R_11016090_SNP [dm3] 2R_15128585_SNP [dm6]	A	G	2.691e^-4	0.856	UPSTREAM chn INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	1091238	X_1091238_DEL [dm3] X_1197205_DEL [dm6]	GG	G	2.711e^-4	0.856	DOWNSTREAM CG11380 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	26031235	3R_26031235_SNP [dm3] 3R_30205513_SNP [dm6]	A	C	2.719e^-4	0.856	DOWNSTREAM RpS7 INTERGENIC
X	6693235	X_6693235_SNP [dm3] X_6799202_SNP [dm6]	C	T	2.728e^-4	0.856	INTRON C3G
X	6639902	X_6639902_SNP [dm3] X_6745869_SNP [dm6]	C	A	2.733e^-4	0.856	DOWNSTREAM CR44964 EXON CR44895
3L	3449393	3L_3449393_SNP [dm3] 3L_3449393_SNP [dm6]	A	G	2.744e^-4	0.856	INTRON eIF5B
3L	14316383	3L_14316383_SNP [dm3] 3L_14323283_SNP [dm6]	T	A	2.747e^-4	0.856	INTRON fz & 1 other
3R	19827699	3R_19827699_SNP [dm3] 3R_24001977_SNP [dm6]	T	C	2.747e^-4	0.856	INTRON KrT95D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5104528	2L_5104528_DEL [dm3] 2L_5104528_DEL [dm6]	AT	A	2.747e^-4	0.856	INTRON Msp300
3L	17761730	3L_17761730_SNP [dm3] 3L_17768630_SNP [dm6]	A	G	2.747e^-4	0.856	INTERGENIC
2L	6029521	2L_6029521_INS [dm3] 2L_6029521_INS [dm6]	C	CTATATCTCC	2.752e^-4	0.856	INTRON CG9109
3L	8553404	3L_8553404_SNP [dm3] 3L_8560304_SNP [dm6]	C	T	2.754e^-4	0.856	START_GAINED rhea UTR_5_PRIME rhea INTRON rhea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8480558	2L_8480558_SNP [dm3] 2L_8480558_SNP [dm6]	T	G	2.760e^-4	0.856	INTRON d	TF binding site mE1_TFBS_HSA
2L	19841090	2L_19841090_SNP [dm3] 2L_19841090_SNP [dm6]	C	T	2.760e^-4	0.856	INTRON sick
3L	10427478	3L_10427478_SNP [dm3] 3L_10434378_SNP [dm6]	A	C	2.771e^-4	0.856	UPSTREAM Ir67c INTERGENIC
3R	15953589	3R_15953589_SNP [dm3] 3R_20127867_SNP [dm6]	C	T	2.772e^-4	0.856	INTERGENIC
2R	10622345	2R_10622345_SNP [dm3] 2R_14734840_SNP [dm6]	T	C	2.773e^-4	0.856	INTERGENIC
3L	15090994	3L_15090994_SNP [dm3] 3L_15097894_SNP [dm6]	G	C	2.779e^-4	0.856	UPSTREAM CTPsyn DOWNSTREAM CR43973 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	17940298	X_17940298_DEL [dm3] X_18046265_DEL [dm6]	AT	A	2.784e^-4	0.856	INTRON Sh & 1 other	TF binding site mE1_TFBS_chinmo
3R	9973666	3R_9973666_INS [dm3] 3R_14147944_INS [dm6]	G	GAC	2.790e^-4	0.856	DOWNSTREAM CG14355 INTERGENIC
2R	15035857	2R_15035857_SNP [dm3] 2R_19148352_SNP [dm6]	T	C	2.793e^-4	0.856	INTRON ena	TF binding site BDTNP1_TFBS_dl
2L	9123659	2L_9123659_INS [dm3] 2L_9123659_INS [dm6]	T	TT	2.796e^-4	0.856	UPSTREAM CR44615 INTERGENIC
2R	15424453	2R_15424453_SNP [dm3] 2R_19536948_SNP [dm6]	C	T	2.798e^-4	0.856	INTRON sm
3L	1669525	3L_1669525_SNP [dm3] 3L_1669525_SNP [dm6]	T	A	2.803e^-4	0.856	UPSTREAM RpL23A DOWNSTREAM CG13930 INTRON RabX5	TF binding site mE1_TFBS_chinmo
2L	12917285	2L_12917285_SNP [dm3] 2L_12917285_SNP [dm6]	G	A	2.803e^-4	0.856	NON_SYNONYMOUS_CODING ACXB DOWNSTREAM ACXC
3R	10483576	3R_10483576_SNP [dm3] 3R_14657854_SNP [dm6]	C	G	2.807e^-4	0.856	INTRON CG3505	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2L	9123538	2L_9123538_SNP [dm3] 2L_9123538_SNP [dm6]	G	A	2.812e^-4	0.856	UPSTREAM CR44615 INTERGENIC
3R	21597220	3R_21597220_SNP [dm3] 3R_25771498_SNP [dm6]	C	A	2.813e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	559524	X_559524_SNP [dm3] X_665491_SNP [dm6]	A	G	2.814e^-4	0.856	INTERGENIC	transposable element FlyBase
3R	21478911	3R_21478911_SNP [dm3] 3R_25653189_SNP [dm6]	A	T	2.821e^-4	0.856	UTR_3_PRIME Tnks
2L	1616506	2L_1616506_SNP [dm3] 2L_1616506_SNP [dm6]	A	T	2.823e^-4	0.856	INTERGENIC
2R	15708211	2R_15708211_SNP [dm3] 2R_19820706_SNP [dm6]	G	A	2.826e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_Kr
2R	14995134	2R_14995134_SNP [dm3] 2R_19107629_SNP [dm6]	C	T	2.826e^-4	0.856	INTRON 5-HT1A
3R	16200078	3R_16200078_SNP [dm3] 3R_20374356_SNP [dm6]	G	A	2.831e^-4	0.856	INTERGENIC
3R	26088399	3R_26088399_SNP [dm3] 3R_30262677_SNP [dm6]	C	A	2.834e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	22811784	3R_22811784_SNP [dm3] 3R_26986062_SNP [dm6]	G	A	2.839e^-4	0.856	SYNONYMOUS_CODING CG31075 DOWNSTREAM CG14253	TF binding site mE1_TFBS_cad
3R	15930345	3R_15930345_SNP [dm3] 3R_20104623_SNP [dm6]	G	C	2.842e^-4	0.856	INTERGENIC
3L	1669522	3L_1669522_SNP [dm3] 3L_1669522_SNP [dm6]	T	A	2.855e^-4	0.856	UPSTREAM RpL23A DOWNSTREAM CG13930 INTRON RabX5	TF binding site mE1_TFBS_chinmo
2R	7536913	2R_7536913_SNP [dm3] 2R_11649408_SNP [dm6]	G	T	2.858e^-4	0.856	UPSTREAM CG9003 INTRON CG9003
3L	3448721	3L_3448721_DEL [dm3] 3L_3448721_DEL [dm6]	AA	A	2.863e^-4	0.856	INTRON eIF5B
X	14163492	X_14163492_SNP [dm3] X_14269459_SNP [dm6]	A	G	2.875e^-4	0.856	SPLICE_SITE_REGION na INTRON na
2L	6295646	2L_6295646_SNP [dm3] 2L_6295646_SNP [dm6]	T	C	2.877e^-4	0.856	INTRON Ddr
2L	9087040	2L_9087040_SNP [dm3] 2L_9087040_SNP [dm6]	A	G	2.879e^-4	0.856	SYNONYMOUS_CODING Toll-4
3L	1667917	3L_1667917_SNP [dm3] 3L_1667917_SNP [dm6]	G	A	2.881e^-4	0.856	SYNONYMOUS_CODING RpL23A UPSTREAM snoRNA:Me28S-A2634a & 1 other DOWNSTREAM RabX5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18722792	2L_18722792_INS [dm3] 2L_18722792_INS [dm6]	T	TGT	2.882e^-4	0.856	INTRON CG10348
3R	22557716	3R_22557716_SNP [dm3] 3R_26731994_SNP [dm6]	A	T	2.893e^-4	0.856	INTERGENIC
3R	22557719	3R_22557719_SNP [dm3] 3R_26731997_SNP [dm6]	A	G	2.893e^-4	0.856	INTERGENIC
X	1091294	X_1091294_SNP [dm3] X_1197261_SNP [dm6]	G	A	2.896e^-4	0.856	DOWNSTREAM CG11380 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	15032086	2R_15032086_SNP [dm3] 2R_19144581_SNP [dm6]	C	G	2.897e^-4	0.856	INTRON ena EXON CR43399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7741442	2L_7741442_SNP [dm3] 2L_7741442_SNP [dm6]	T	C	2.913e^-4	0.856	INTRON Acp1
X	585694	X_585694_SNP [dm3] X_691661_SNP [dm6]	A	G	2.913e^-4	0.856	INTRON sdk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6029579	2L_6029579_SNP [dm3] 2L_6029579_SNP [dm6]	T	G	2.914e^-4	0.856	INTRON CG9109
X	557436	X_557436_SNP [dm3] X_663403_SNP [dm6]	A	T	2.920e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_sens
2R	4779980	2R_4779980_SNP [dm3] 2R_8892475_SNP [dm6]	G	A	2.921e^-4	0.856	SYNONYMOUS_CODING Dmn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15954010	3R_15954010_SNP [dm3] 3R_20128288_SNP [dm6]	A	T	2.922e^-4	0.856	INTERGENIC
2L	18884229	2L_18884229_SNP [dm3] 2L_18884229_SNP [dm6]	G	A	2.923e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	20454322	3L_20454322_SNP [dm3] 3L_20461222_SNP [dm6]	C	A	2.923e^-4	0.856	SYNONYMOUS_CODING mag INTRON CG5195	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11097012	3R_11097012_SNP [dm3] 3R_15271290_SNP [dm6]	G	A	2.930e^-4	0.856	NON_SYNONYMOUS_CODING Cp190 DOWNSTREAM Zip88E	TF binding site mE1_TFBS_sens
2L	9131116	2L_9131116_SNP [dm3] 2L_9131116_SNP [dm6]	T	C	2.930e^-4	0.856	INTRON CG32982
3R	26088272	3R_26088272_DEL [dm3] 3R_30262550_DEL [dm6]	ATGCAA	A	2.934e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_Kr
X	14626469	X_14626469_SNP [dm3] X_14732436_SNP [dm6]	G	A	2.936e^-4	0.856	INTRON NetB
X	501779	X_501779_SNP [dm3] X_607746_SNP [dm6]	T	G	2.937e^-4	0.856	INTRON CG13366	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	558924	X_558924_INS [dm3] X_664891_INS [dm6]	T	TTT	2.938e^-4	0.856	INTERGENIC
X	2891833	X_2891833_SNP [dm3] X_2997800_SNP [dm6]	G	A	2.943e^-4	0.856	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	503864	X_503864_SNP [dm3] X_609831_SNP [dm6]	T	C	2.943e^-4	0.856	DOWNSTREAM CG13366 INTRON CG13366
X	21934277	X_21934277_SNP [dm3] X_22532441_SNP [dm6]	T	C	2.949e^-4	0.856	SYNONYMOUS_CODING S6kII INTRON CG17600
X	16295446	X_16295446_SNP [dm3] X_16401413_SNP [dm6]	A	G	2.951e^-4	0.856	NON_SYNONYMOUS_CODING CG9981	TF binding site mE1_TFBS_HSA
2R	11359024	2R_11359024_SNP [dm3] 2R_15471519_SNP [dm6]	T	C	2.953e^-4	0.856	UTR_3_PRIME CG43729 DOWNSTREAM CG43729 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	7542463	3L_7542463_SNP [dm3] 3L_7549363_SNP [dm6]	G	A	2.958e^-4	0.856	INTERGENIC
2L	18940673	2L_18940673_INS [dm3] 2L_18940673_INS [dm6]	T	TTTAAAAC	2.978e^-4	0.856	INTRON ssp3	TF binding site mE1_TFBS_cad
X	1091407	X_1091407_SNP [dm3] X_1197374_SNP [dm6]	T	G	2.982e^-4	0.856	DOWNSTREAM CG11380 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7440468	2L_7440468_SNP [dm3] 2L_7440468_SNP [dm6]	C	A	2.993e^-4	0.856	UPSTREAM CG5973 INTRON CG5973
3L	1667914	3L_1667914_SNP [dm3] 3L_1667914_SNP [dm6]	C	A	2.999e^-4	0.856	SYNONYMOUS_CODING RpL23A UPSTREAM snoRNA:Me28S-A2634a & 1 other DOWNSTREAM RabX5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3325668	2L_3325668_SNP [dm3] 2L_3325668_SNP [dm6]	C	T	3.001e^-4	0.856	INTRON CG33281
3R	23802610	3R_23802610_SNP [dm3] 3R_27976888_SNP [dm6]	T	C	3.003e^-4	0.856	INTRON betaTub97EF
X	21138010	X_21138010_SNP [dm3] X_21266983_SNP [dm6]	T	C	3.004e^-4	0.856	INTRON CG32521
2R	17659208	2R_17659208_SNP [dm3] 2R_21771703_SNP [dm6]	G	C	3.013e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	5917319	2L_5917319_SNP [dm3] 2L_5917319_SNP [dm6]	G	C	3.014e^-4	0.856	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_chinmo
X	1098145	X_1098145_SNP [dm3] X_1204112_SNP [dm6]	A	G	3.020e^-4	0.856	NON_SYNONYMOUS_CODING CG11381 DOWNSTREAM CG14625	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	8249099	X_8249099_SNP [dm3] X_8355066_SNP [dm6]	T	C	3.026e^-4	0.856	INTRON nAChRalpha3
3L	20408468	3L_20408468_SNP [dm3] 3L_20415368_SNP [dm6]	A	T	3.034e^-4	0.856	INTRON zye
3L	1454855	3L_1454855_SNP [dm3] 3L_1454855_SNP [dm6]	G	A	3.035e^-4	0.856	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	10643887	2R_10643887_SNP [dm3] 2R_14756382_SNP [dm6]	G	A	3.037e^-4	0.856	UPSTREAM CG12859 & 1 other DOWNSTREAM Trs31 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9079667	2L_9079667_SNP [dm3] 2L_9079667_SNP [dm6]	C	T	3.040e^-4	0.856	INTERGENIC
X	7732136	X_7732136_INS [dm3] X_7838103_INS [dm6]	C	CAGTATAATTCGCTTAGCTG...	3.040e^-4	0.856	INTRON CG1402	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3R	15953825	3R_15953825_SNP [dm3] 3R_20128103_SNP [dm6]	C	T	3.049e^-4	0.856	INTERGENIC
2L	17925808	2L_17925808_SNP [dm3] 2L_17925808_SNP [dm6]	C	T	3.049e^-4	0.856	INTERGENIC
2L	1946802	2L_1946802_SNP [dm3] 2L_1946802_SNP [dm6]	A	G	3.051e^-4	0.856	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	5176376	X_5176376_SNP [dm3] X_5282343_SNP [dm6]	G	T	3.060e^-4	0.856	INTERGENIC
3R	20511213	3R_20511213_SNP [dm3] 3R_24685491_SNP [dm6]	C	A	3.066e^-4	0.856	INTRON slo
3R	19886927	3R_19886927_SNP [dm3] 3R_24061205_SNP [dm6]	C	T	3.075e^-4	0.856	SYNONYMOUS_CODING SMC1
3R	18633030	3R_18633030_SNP [dm3] 3R_22807308_SNP [dm6]	C	T	3.083e^-4	0.856	DOWNSTREAM CG7031 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10622349	2R_10622349_SNP [dm3] 2R_14734844_SNP [dm6]	C	G	3.085e^-4	0.856	INTERGENIC
X	6323307	X_6323307_SNP [dm3] X_6429274_SNP [dm6]	T	C	3.088e^-4	0.856	INTRON CG42340
2L	3477606	2L_3477606_SNP [dm3] 2L_3477606_SNP [dm6]	G	T	3.092e^-4	0.856	UPSTREAM Thor EXON CR43928	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3477754	2L_3477754_SNP [dm3] 2L_3477754_SNP [dm6]	T	C	3.092e^-4	0.856	UPSTREAM Thor DOWNSTREAM CR43928 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20377898	3R_20377898_SNP [dm3] 3R_24552176_SNP [dm6]	A	T	3.095e^-4	0.856	SYNONYMOUS_CODING Esyt2	TF binding site mE1_TFBS_cad
2L	9085843	2L_9085843_SNP [dm3] 2L_9085843_SNP [dm6]	A	G	3.099e^-4	0.856	INTRON Toll-4
X	6974739	X_6974739_SNP [dm3] X_7080706_SNP [dm6]	T	C	3.100e^-4	0.856	INTRON Sxl
2L	5148337	2L_5148337_SNP [dm3] 2L_5148337_SNP [dm6]	C	T	3.109e^-4	0.856	INTRON Msp300
3R	21691271	3R_21691271_SNP [dm3] 3R_25865549_SNP [dm6]	A	T	3.119e^-4	0.856	INTRON CG5890
X	589655	X_589655_SNP [dm3] X_695622_SNP [dm6]	C	A	3.125e^-4	0.856	INTRON sdk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26088427	3R_26088427_SNP [dm3] 3R_30262705_SNP [dm6]	G	C	3.129e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	15951605	3R_15951605_SNP [dm3] 3R_20125883_SNP [dm6]	A	G	3.131e^-4	0.856	INTERGENIC
3L	4178141	3L_4178141_SNP [dm3] 3L_4178141_SNP [dm6]	A	T	3.135e^-4	0.856	UTR_5_PRIME Teh4 DOWNSTREAM Teh2 INTRON CG18675
2L	1616542	2L_1616542_SNP [dm3] 2L_1616542_SNP [dm6]	C	A	3.141e^-4	0.856	INTERGENIC
3R	15953781	3R_15953781_SNP [dm3] 3R_20128059_SNP [dm6]	A	G	3.168e^-4	0.856	INTERGENIC
2L	1677399	2L_1677399_SNP [dm3] 2L_1677399_SNP [dm6]	A	T	3.172e^-4	0.856	INTRON chinmo
2L	14559922	2L_14559922_SNP [dm3] 2L_14559922_SNP [dm6]	T	G	3.179e^-4	0.856	UPSTREAM CR44855 INTERGENIC	TF binding site mE1_TFBS_cad
2R	6770611	2R_6770611_SNP [dm3] 2R_10883106_SNP [dm6]	T	C	3.184e^-4	0.856	SYNONYMOUS_CODING Pex6 UPSTREAM CG18003
2L	20248581	2L_20248581_SNP [dm3] 2L_20248581_SNP [dm6]	A	T	3.185e^-4	0.856	DOWNSTREAM CR40172 EXON CR40341
3L	16833904	3L_16833904_SNP [dm3] 3L_16840804_SNP [dm6]	A	T	3.190e^-4	0.856	INTERGENIC
X	540606	X_540606_SNP [dm3] X_646573_SNP [dm6]	C	A	3.196e^-4	0.856	UPSTREAM Roc1a DOWNSTREAM CG13367 INTERGENIC	transposable element FlyBase
3R	12959938	3R_12959938_SNP [dm3] 3R_17134216_SNP [dm6]	C	A	3.207e^-4	0.856	UTR_5_PRIME CG31267 DOWNSTREAM CG31266
3R	22869349	3R_22869349_DEL [dm3] 3R_27043627_DEL [dm6]	AACT	A	3.221e^-4	0.856	INTRON RYa-R
3R	22738756	3R_22738756_SNP [dm3] 3R_26913034_SNP [dm6]	T	A	3.222e^-4	0.856	UPSTREAM Ets97D INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	457442	X_457442_SNP [dm3] X_563409_SNP [dm6]	G	C	3.230e^-4	0.856	INTRON Appl
3L	10427466	3L_10427466_SNP [dm3] 3L_10434366_SNP [dm6]	A	T	3.233e^-4	0.856	UPSTREAM Ir67c INTERGENIC
3L	8816647	3L_8816647_SNP [dm3] 3L_8823547_SNP [dm6]	G	C	3.235e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_cad
3L	5266669	3L_5266669_SNP [dm3] 3L_5273569_SNP [dm6]	G	A	3.238e^-4	0.856	UPSTREAM shep INTRON shep
3L	17761729	3L_17761729_SNP [dm3] 3L_17768629_SNP [dm6]	G	A	3.239e^-4	0.856	INTERGENIC
X	21951587	X_21951587_SNP [dm3] X_22549751_SNP [dm6]	C	T	3.259e^-4	0.856	INTERGENIC
2L	3385797	2L_3385797_SNP [dm3] 2L_3385797_SNP [dm6]	G	A	3.262e^-4	0.856	INTERGENIC
2R	9647115	2R_9647115_SNP [dm3] 2R_13759610_SNP [dm6]	G	C	3.266e^-4	0.856	DOWNSTREAM CG6280 INTERGENIC
2L	14867018	2L_14867018_SNP [dm3] 2L_14867018_SNP [dm6]	A	G	3.271e^-4	0.856	INTERGENIC
3R	15957464	3R_15957464_SNP [dm3] 3R_20131742_SNP [dm6]	A	T	3.276e^-4	0.856	INTERGENIC
2L	20573159	2L_20573159_SNP [dm3] 2L_20573159_SNP [dm6]	A	G	3.278e^-4	0.856	INTRON CR45347
3L	1147273	3L_1147273_INS [dm3] 3L_1147273_INS [dm6]	C	ACAGG	3.286e^-4	0.856	INTRON bab2
3R	15953609	3R_15953609_SNP [dm3] 3R_20127887_SNP [dm6]	C	T	3.288e^-4	0.856	INTERGENIC
2R	11413959	2R_11413959_SNP [dm3] 2R_15526454_SNP [dm6]	T	C	3.294e^-4	0.856	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9733820	2R_9733820_SNP [dm3] 2R_13846315_SNP [dm6]	T	C	3.296e^-4	0.856	UPSTREAM CG30484 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11502092	2R_11502092_SNP [dm3] 2R_15614587_SNP [dm6]	C	T	3.303e^-4	0.856	START_GAINED CG42524 UTR_5_PRIME CG42524	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21346058	3R_21346058_SNP [dm3] 3R_25520336_SNP [dm6]	G	A	3.308e^-4	0.856	INTRON msi
2L	9089320	2L_9089320_SNP [dm3] 2L_9089320_SNP [dm6]	C	T	3.313e^-4	0.856	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9113987	2L_9113987_SNP [dm3] 2L_9113987_SNP [dm6]	C	T	3.313e^-4	0.856	DOWNSTREAM Or30a INTERGENIC
3R	18688362	3R_18688362_SNP [dm3] 3R_22862640_SNP [dm6]	A	G	3.325e^-4	0.856	INTERGENIC
X	6998754	X_6998754_SNP [dm3] X_7104721_SNP [dm6]	T	C	3.334e^-4	0.856	UPSTREAM CG8300 & 1 other INTERGENIC
3L	3392599	3L_3392599_SNP [dm3] 3L_3392599_SNP [dm6]	G	A	3.336e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7138317	X_7138317_SNP [dm3] X_7244284_SNP [dm6]	A	G	3.336e^-4	0.856	INTRON CR44357	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6323115	X_6323115_SNP [dm3] X_6429082_SNP [dm6]	T	G	3.343e^-4	0.856	INTRON CG42340
X	15586656	X_15586656_SNP [dm3] X_15692623_SNP [dm6]	T	G	3.345e^-4	0.856	DOWNSTREAM CR45524 & 1 other INTERGENIC
2L	9095890	2L_9095890_SNP [dm3] 2L_9095890_SNP [dm6]	T	C	3.349e^-4	0.856	INTERGENIC
3L	6828858	3L_6828858_SNP [dm3] 3L_6835758_SNP [dm6]	A	G	3.358e^-4	0.856	INTERGENIC
2L	5949391	2L_5949391_SNP [dm3] 2L_5949391_SNP [dm6]	A	C	3.359e^-4	0.856	UPSTREAM CR44986 & 1 other DOWNSTREAM Gpdh INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	17345744	3R_17345744_SNP [dm3] 3R_21520022_SNP [dm6]	A	G	3.360e^-4	0.856	UPSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	5389396	3L_5389396_SNP [dm3] 3L_5396296_SNP [dm6]	T	A	3.363e^-4	0.856	INTERGENIC
2L	18761721	2L_18761721_DEL [dm3] 2L_18761721_DEL [dm6]	CAAAATGA	C	3.365e^-4	0.856	INTERGENIC
X	21283992	X_21283992_INS [dm3] X_21412965_INS [dm6]	T	GC	3.365e^-4	0.856	INTERGENIC
3L	10489540	3L_10489540_INS [dm3] 3L_10496440_INS [dm6]	A	ATACATGATACAAACATT...	3.378e^-4	0.856	INTRON A2bp1
2L	8075079	2L_8075079_SNP [dm3] 2L_8075079_SNP [dm6]	G	A	3.380e^-4	0.856	SYNONYMOUS_CODING Mcr
3L	2438374	3L_2438374_SNP [dm3] 3L_2438374_SNP [dm6]	T	G	3.383e^-4	0.856	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	19357082	3R_19357082_SNP [dm3] 3R_23531360_SNP [dm6]	G	A	3.383e^-4	0.856	UPSTREAM CG10175 INTERGENIC
2L	20542436	2L_20542436_SNP [dm3] 2L_20542436_SNP [dm6]	C	A	3.384e^-4	0.856	INTERGENIC
X	14164159	X_14164159_SNP [dm3] X_14270126_SNP [dm6]	A	C	3.384e^-4	0.856	SYNONYMOUS_CODING na	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	10927623	X_10927623_SNP [dm3] X_11033590_SNP [dm6]	A	C	3.385e^-4	0.856	INTRON CG42339
2L	7427366	2L_7427366_SNP [dm3] 2L_7427366_SNP [dm6]	A	G	3.386e^-4	0.856	UPSTREAM CG5261 INTRON CG5261	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
X	7818842	X_7818842_SNP [dm3] X_7924809_SNP [dm6]	G	A	3.387e^-4	0.856	UTR_3_PRIME CG10777
X	21283994	X_21283994_MNP [dm3] X_21412967_MNP [dm6]	TTT	AAC	3.390e^-4	0.856	INTERGENIC
2L	9089761	2L_9089761_SNP [dm3] 2L_9089761_SNP [dm6]	G	A	3.396e^-4	0.856	DOWNSTREAM Toll-4 INTERGENIC
2R	12267801	2R_12267801_SNP [dm3] 2R_16380296_SNP [dm6]	C	T	3.397e^-4	0.856	UPSTREAM CG43187 & 1 other DOWNSTREAM CR45316 INTERGENIC
X	1037025	X_1037025_SNP [dm3] X_1142992_SNP [dm6]	C	T	3.399e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21513167	3R_21513167_SNP [dm3] 3R_25687445_SNP [dm6]	G	C	3.405e^-4	0.856	UPSTREAM CLS INTERGENIC	TF binding site mE1_TFBS_cad
2L	9637866	2L_9637866_SNP [dm3] 2L_9637866_SNP [dm6]	A	G	3.413e^-4	0.856	INTRON Apoltp
X	16668094	X_16668094_INS [dm3] X_16774061_INS [dm6]	T	TT	3.418e^-4	0.856	INTRON if	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	502995	X_502995_SNP [dm3] X_608962_SNP [dm6]	A	T	3.421e^-4	0.856	INTRON CG13366
3R	21730722	3R_21730722_SNP [dm3] 3R_25905000_SNP [dm6]	T	G	3.422e^-4	0.856	DOWNSTREAM CG31089 & 1 other INTRON CR43259
3L	5389412	3L_5389412_SNP [dm3] 3L_5396312_SNP [dm6]	G	A	3.428e^-4	0.856	INTERGENIC
2L	1102019	2L_1102019_SNP [dm3] 2L_1102019_SNP [dm6]	A	T	3.433e^-4	0.856	INTRON CG4629
2L	10355683	2L_10355683_SNP [dm3] 2L_10355683_SNP [dm6]	G	C	3.439e^-4	0.856	SYNONYMOUS_CODING CG5367
X	503840	X_503840_SNP [dm3] X_609807_SNP [dm6]	C	T	3.440e^-4	0.856	DOWNSTREAM CG13366 INTRON CG13366
3R	18834580	3R_18834580_INS [dm3] 3R_23008858_INS [dm6]	A	AA	3.442e^-4	0.856	INTRON CG34375
3R	15953379	3R_15953379_SNP [dm3] 3R_20127657_SNP [dm6]	C	G	3.442e^-4	0.856	INTERGENIC
3R	15957317	3R_15957317_DEL [dm3] 3R_20131595_DEL [dm6]	TTACT	T	3.444e^-4	0.856	INTERGENIC
3L	14732158	3L_14732158_SNP [dm3] 3L_14739058_SNP [dm6]	T	G	3.446e^-4	0.856	INTRON ome	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3061575	2L_3061575_SNP [dm3] 2L_3061575_SNP [dm6]	A	G	3.447e^-4	0.856	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6136185	2L_6136185_SNP [dm3] 2L_6136185_SNP [dm6]	G	C	3.447e^-4	0.856	INTERGENIC
2R	18777781	2R_18777781_SNP [dm3] 2R_22890258_SNP [dm6]	C	A	3.454e^-4	0.856	INTRON MED23	TF binding site mE1_TFBS_cad
3R	25601370	3R_25601370_SNP [dm3] 3R_29775648_SNP [dm6]	C	G	3.461e^-4	0.856	INTRON kay	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	12790241	2L_12790241_SNP [dm3] 2L_12790241_SNP [dm6]	C	T	3.463e^-4	0.856	INTERGENIC
X	7640485	X_7640485_SNP [dm3] X_7746452_SNP [dm6]	A	C	3.467e^-4	0.856	INTERGENIC
2R	13775676	2R_13775676_SNP [dm3] 2R_17888171_SNP [dm6]	G	A	3.469e^-4	0.856	SYNONYMOUS_CODING PPO1 INTRON Elk	TF binding site mE1_TFBS_cad
2R	18763050	2R_18763050_SNP [dm3] 2R_22875527_SNP [dm6]	A	C	3.473e^-4	0.856	UPSTREAM CR45469 INTRON PIP5K59B	TF binding site mE1_TFBS_HSA
2R	19170116	2R_19170116_SNP [dm3] 2R_23282593_SNP [dm6]	T	C	3.495e^-4	0.856	DOWNSTREAM CG3124 INTERGENIC
2L	15631521	2L_15631521_SNP [dm3] 2L_15631521_SNP [dm6]	C	T	3.510e^-4	0.856	SYNONYMOUS_CODING CG18480	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1033285	3L_1033285_SNP [dm3] 3L_1033285_SNP [dm6]	A	T	3.526e^-4	0.856	INTRON trio	TF binding site BDTNP1_TFBS_dl
2R	17448124	2R_17448124_SNP [dm3] 2R_21560619_SNP [dm6]	G	A	3.526e^-4	0.856	UTR_3_PRIME CG10440 DOWNSTREAM Egfr
2R	11016262	2R_11016262_SNP [dm3] 2R_15128757_SNP [dm6]	C	T	3.528e^-4	0.856	UPSTREAM chn INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
2L	19134076	2L_19134076_SNP [dm3] 2L_19134076_SNP [dm6]	G	C	3.538e^-4	0.856	UTR_5_PRIME brat UPSTREAM l_2_37Cg DOWNSTREAM l_2_37Ce INTRON l_2_37Cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
X	587503	X_587503_SNP [dm3] X_693470_SNP [dm6]	A	G	3.543e^-4	0.856	INTRON sdk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17574029	X_17574029_SNP [dm3] X_17679996_SNP [dm6]	A	G	3.551e^-4	0.856	INTRON chas
3L	3449065	3L_3449065_INS [dm3] 3L_3449065_INS [dm6]	A	ACAGTGGCA	3.554e^-4	0.856	INTRON eIF5B
X	467798	X_467798_SNP [dm3] X_573765_SNP [dm6]	A	T	3.562e^-4	0.856	INTRON Appl
3L	7904086	3L_7904086_SNP [dm3] 3L_7910986_SNP [dm6]	A	T	3.570e^-4	0.856	INTRON pbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	575528	X_575528_INS [dm3] X_681495_INS [dm6]	T	TT	3.571e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	6884788	2L_6884788_SNP [dm3] 2L_6884788_SNP [dm6]	C	G	3.575e^-4	0.856	INTRON Nlg2
3R	10054058	3R_10054058_SNP [dm3] 3R_14228336_SNP [dm6]	T	C	3.578e^-4	0.856	NON_SYNONYMOUS_CODING CG9624
2R	14680721	2R_14680721_SNP [dm3] 2R_18793216_SNP [dm6]	G	A	3.581e^-4	0.856	SYNONYMOUS_CODING CG15080
2L	19646312	2L_19646312_SNP [dm3] 2L_19646312_SNP [dm6]	G	A	3.586e^-4	0.856	INTRON Lar
3R	19830255	3R_19830255_SNP [dm3] 3R_24004533_SNP [dm6]	G	A	3.589e^-4	0.856	INTRON KrT95D
3R	12700665	3R_12700665_SNP [dm3] 3R_16874943_SNP [dm6]	G	A	3.593e^-4	0.856	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18285084	2R_18285084_SNP [dm3] 2R_22397579_SNP [dm6]	C	T	3.595e^-4	0.856	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9098843	2L_9098843_SNP [dm3] 2L_9098843_SNP [dm6]	A	T	3.600e^-4	0.856	UPSTREAM CR44482 DOWNSTREAM CG31609 INTERGENIC
3R	8758190	3R_8758190_SNP [dm3] 3R_12932468_SNP [dm6]	A	G	3.602e^-4	0.856	INTRON beat-Vb	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	498295	X_498295_SNP [dm3] X_604262_SNP [dm6]	A	G	3.608e^-4	0.856	INTRON CG13366
X	554537	X_554537_SNP [dm3] X_660504_SNP [dm6]	T	G	3.613e^-4	0.856	INTERGENIC
3R	15704087	3R_15704087_SNP [dm3] 3R_19878365_SNP [dm6]	G	A	3.616e^-4	0.856	SYNONYMOUS_CODING Arc42 UPSTREAM CG17186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7427364	2L_7427364_SNP [dm3] 2L_7427364_SNP [dm6]	A	C	3.641e^-4	0.856	UPSTREAM CG5261 INTRON CG5261	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2L	8157871	2L_8157871_SNP [dm3] 2L_8157871_SNP [dm6]	C	T	3.652e^-4	0.856	SYNONYMOUS_CODING CG43394 INTRON CG8552	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	13097864	3R_13097864_SNP [dm3] 3R_17272142_SNP [dm6]	A	G	3.671e^-4	0.856	INTERGENIC
X	536512	X_536512_SNP [dm3] X_642479_SNP [dm6]	C	A	3.675e^-4	0.856	NON_SYNONYMOUS_CODING su_s_	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6828518	3L_6828518_SNP [dm3] 3L_6835418_SNP [dm6]	C	G	3.684e^-4	0.856	INTERGENIC
2R	14995142	2R_14995142_SNP [dm3] 2R_19107637_SNP [dm6]	C	T	3.687e^-4	0.856	INTRON 5-HT1A
X	12613912	X_12613912_SNP [dm3] X_12719879_SNP [dm6]	A	G	3.700e^-4	0.856	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11979908	2L_11979908_SNP [dm3] 2L_11979908_SNP [dm6]	G	A	3.706e^-4	0.856	INTERGENIC
3L	1947947	3L_1947947_SNP [dm3] 3L_1947947_SNP [dm6]	G	A	3.708e^-4	0.856	NON_SYNONYMOUS_CODING Cnb UPSTREAM mu2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14964049	2L_14964049_SNP [dm3] 2L_14964049_SNP [dm6]	C	T	3.713e^-4	0.856	INTRON CG42313
3R	15963058	3R_15963058_SNP [dm3] 3R_20137336_SNP [dm6]	C	T	3.718e^-4	0.856	INTERGENIC
2L	12922432	2L_12922432_SNP [dm3] 2L_12922432_SNP [dm6]	G	A	3.725e^-4	0.856	SYNONYMOUS_CODING ACXA
3L	1338870	3L_1338870_SNP [dm3] 3L_1338870_SNP [dm6]	T	G	3.727e^-4	0.856	SYNONYMOUS_CODING l_3_02640 DOWNSTREAM CG2199	TF binding site mE1_TFBS_chinmo
X	576557	X_576557_SNP [dm3] X_682524_SNP [dm6]	A	T	3.731e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	13030581	2R_13030581_SNP [dm3] 2R_17143076_SNP [dm6]	C	A	3.735e^-4	0.856	DOWNSTREAM snoRNA:U3:54Aa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3R	24276119	3R_24276119_SNP [dm3] 3R_28450397_SNP [dm6]	A	T	3.736e^-4	0.856	INTRON beat-VI
2L	9092633	2L_9092633_SNP [dm3] 2L_9092633_SNP [dm6]	A	C	3.746e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
X	13567083	X_13567083_SNP [dm3] X_13673050_SNP [dm6]	T	C	3.753e^-4	0.856	SYNONYMOUS_CODING CG15760 INTRON CG15760	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12451487	3L_12451487_SNP [dm3] 3L_12458387_SNP [dm6]	A	C	3.760e^-4	0.856	INTERGENIC
2L	2163678	2L_2163678_SNP [dm3] 2L_2163678_SNP [dm6]	G	A	3.771e^-4	0.856	INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
2L	18893197	2L_18893197_DEL [dm3] 2L_18893197_DEL [dm6]	TATGTAT	T	3.778e^-4	0.856	UPSTREAM CR44737 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	2897339	X_2897339_SNP [dm3] X_3003306_SNP [dm6]	C	G	3.781e^-4	0.856	INTRON kirre
3R	12803795	3R_12803795_SNP [dm3] 3R_16978073_SNP [dm6]	A	G	3.798e^-4	0.856	UPSTREAM Actn3 DOWNSTREAM Ahcy89E INTERGENIC
3R	15488751	3R_15488751_SNP [dm3] 3R_19663029_SNP [dm6]	T	C	3.806e^-4	0.856	INTRON ort
3L	15728915	3L_15728915_SNP [dm3] 3L_15735815_SNP [dm6]	T	C	3.810e^-4	0.856	INTERGENIC
3L	1146873	3L_1146873_SNP [dm3] 3L_1146873_SNP [dm6]	C	G	3.826e^-4	0.856	INTRON bab2
2L	3159690	2L_3159690_SNP [dm3] 2L_3159690_SNP [dm6]	G	C	3.829e^-4	0.856	UPSTREAM gkt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	12710339	3R_12710339_SNP [dm3] 3R_16884617_SNP [dm6]	T	C	3.833e^-4	0.856	INTRON iab-8	TF binding site mE1_TFBS_HSA
3L	1338849	3L_1338849_SNP [dm3] 3L_1338849_SNP [dm6]	C	A	3.834e^-4	0.856	SYNONYMOUS_CODING l_3_02640 DOWNSTREAM CG2199	TF binding site mE1_TFBS_chinmo
3R	21539353	3R_21539353_SNP [dm3] 3R_25713631_SNP [dm6]	G	C	3.835e^-4	0.856	NON_SYNONYMOUS_CODING LpR2 INTRON LpR2
2R	14125495	2R_14125495_SNP [dm3] 2R_18237990_SNP [dm6]	A	C	3.840e^-4	0.856	INTERGENIC
X	5971153	X_5971153_SNP [dm3] X_6077120_SNP [dm6]	A	T	3.841e^-4	0.856	INTRON CG4666
X	2358619	X_2358619_SNP [dm3] X_2464586_SNP [dm6]	T	G	3.842e^-4	0.856	INTRON boi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	4534052	3L_4534052_INS [dm3] 3L_4534052_INS [dm6]	A	AA	3.842e^-4	0.856	INTRON CG11353
2L	10943690	2L_10943690_SNP [dm3] 2L_10943690_SNP [dm6]	G	A	3.845e^-4	0.856	UPSTREAM CR44492 & 1 other INTRON dpr2
2L	10414865	2L_10414865_SNP [dm3] 2L_10414865_SNP [dm6]	T	A	3.847e^-4	0.856	SYNONYMOUS_CODING Klp31E	TF binding site mE1_TFBS_HSA
2L	3329306	2L_3329306_SNP [dm3] 2L_3329306_SNP [dm6]	G	A	3.850e^-4	0.856	SYNONYMOUS_CODING CG33282
3R	22813772	3R_22813772_SNP [dm3] 3R_26988050_SNP [dm6]	A	T	3.869e^-4	0.856	UPSTREAM CG31075 DOWNSTREAM CG31076 INTRON CG31075
3R	19885317	3R_19885317_SNP [dm3] 3R_24059595_SNP [dm6]	C	T	3.877e^-4	0.856	SYNONYMOUS_CODING SMC1	TF binding site mE1_TFBS_sens
3L	3981792	3L_3981792_SNP [dm3] 3L_3981792_SNP [dm6]	G	A	3.877e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs
X	17246837	X_17246837_SNP [dm3] X_17352804_SNP [dm6]	C	A	3.884e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5327199	3L_5327199_DEL [dm3] 3L_5334099_DEL [dm6]	AA	A	3.891e^-4	0.856	UPSTREAM CR45742 INTERGENIC
2R	15035149	2R_15035149_SNP [dm3] 2R_19147644_SNP [dm6]	C	T	3.895e^-4	0.856	INTRON ena	TF binding site mE1_TFBS_HSA
X	8223538	X_8223538_SNP [dm3] X_8329505_SNP [dm6]	T	A	3.897e^-4	0.856	UTR_5_PRIME nAChRalpha3
3L	4346839	3L_4346839_SNP [dm3] 3L_4346839_SNP [dm6]	A	T	3.907e^-4	0.856	INTRON Cip4 EXON CR45156
2L	9096056	2L_9096056_SNP [dm3] 2L_9096056_SNP [dm6]	A	T	3.910e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10229376	2R_10229376_SNP [dm3] 2R_14341871_SNP [dm6]	C	A	3.915e^-4	0.856	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8234304	2L_8234304_SNP [dm3] 2L_8234304_SNP [dm6]	A	C	3.923e^-4	0.856	INTRON Pvr
3L	20444808	3L_20444808_INS [dm3] 3L_20451708_INS [dm6]	A	AA	3.928e^-4	0.856	INTRON CG5199	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13566750	X_13566750_SNP [dm3] X_13672717_SNP [dm6]	A	C	3.934e^-4	0.856	SYNONYMOUS_CODING CG15760 INTRON CG15760	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	22548249	3R_22548249_SNP [dm3] 3R_26722527_SNP [dm6]	G	T	3.949e^-4	0.856	SYNONYMOUS_CODING CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4178099	3L_4178099_SNP [dm3] 3L_4178099_SNP [dm6]	T	C	3.961e^-4	0.856	UTR_5_PRIME Teh4 DOWNSTREAM Teh2 INTRON CG18675
2R	10590744	2R_10590744_SNP [dm3] 2R_14703239_SNP [dm6]	A	C	3.971e^-4	0.856	INTRON mspo
2L	12771277	2L_12771277_SNP [dm3] 2L_12771277_SNP [dm6]	A	G	3.977e^-4	0.856	INTERGENIC
3R	17366796	3R_17366796_SNP [dm3] 3R_21541074_SNP [dm6]	G	A	3.984e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	5637682	3R_5637682_SNP [dm3] 3R_9811960_SNP [dm6]	A	G	4.007e^-4	0.856	UPSTREAM CG8534 INTRON CR44035	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	2989476	2R_2989476_SNP [dm3] 2R_7101971_SNP [dm6]	C	A	4.018e^-4	0.856	INTRON esn
2L	6725570	2L_6725570_SNP [dm3] 2L_6725570_SNP [dm6]	T	C	4.020e^-4	0.856	INTRON Liprin-alpha	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl
2R	10583872	2R_10583872_SNP [dm3] 2R_14696367_SNP [dm6]	T	A	4.035e^-4	0.856	INTRON mspo
3R	22551358	3R_22551358_DEL [dm3] 3R_26725636_DEL [dm6]	TTTCC	T	4.036e^-4	0.856	UPSTREAM CG14244 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_run mE1_TFBS_Ubx
3R	22551364	3R_22551364_SNP [dm3] 3R_26725642_SNP [dm6]	G	A	4.036e^-4	0.856	UPSTREAM CG14244 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_run mE1_TFBS_Ubx
3R	22551366	3R_22551366_SNP [dm3] 3R_26725644_SNP [dm6]	A	T	4.036e^-4	0.856	UPSTREAM CG14244 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_run mE1_TFBS_Ubx
3R	1756259	3R_1756259_SNP [dm3] 3R_5930537_SNP [dm6]	C	T	4.043e^-4	0.856	INTRON CG34113
2R	12957167	2R_12957167_SNP [dm3] 2R_17069662_SNP [dm6]	A	T	4.051e^-4	0.856	NON_SYNONYMOUS_CODING CG30460 INTRON CG30460	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8598288	3L_8598288_SNP [dm3] 3L_8605188_SNP [dm6]	A	G	4.056e^-4	0.856	INTRON CG6282	TF binding site BDTNP1_TFBS_dl
2L	20552605	2L_20552605_SNP [dm3] 2L_20552605_SNP [dm6]	C	A	4.064e^-4	0.856	INTERGENIC
2R	10938855	2R_10938855_DEL [dm3] 2R_15051350_DEL [dm6]	AT	A	4.068e^-4	0.856	UPSTREAM CR43622 INTERGENIC
2L	1353228	2L_1353228_SNP [dm3] 2L_1353228_SNP [dm6]	G	T	4.071e^-4	0.856	SYNONYMOUS_CODING CG5561 UPSTREAM CG5556 DOWNSTREAM CG31924
X	7669986	X_7669986_SNP [dm3] X_7775953_SNP [dm6]	C	T	4.072e^-4	0.856	INTERGENIC
X	585668	X_585668_SNP [dm3] X_691635_SNP [dm6]	G	A	4.072e^-4	0.856	INTRON sdk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13033956	2R_13033956_SNP [dm3] 2R_17146451_SNP [dm6]	G	A	4.077e^-4	0.856	DOWNSTREAM snoRNA:U3:54Ab INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2L	18786678	2L_18786678_SNP [dm3] 2L_18786678_SNP [dm6]	C	T	4.078e^-4	0.856	INTRON ham	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	585242	X_585242_SNP [dm3] X_691209_SNP [dm6]	T	C	4.080e^-4	0.856	INTRON sdk
X	14163290	X_14163290_SNP [dm3] X_14269257_SNP [dm6]	A	T	4.101e^-4	0.856	INTRON na
3L	13164273	3L_13164273_SNP [dm3] 3L_13171173_SNP [dm6]	A	T	4.105e^-4	0.856	INTERGENIC
3L	21947716	3L_21947716_SNP [dm3] 3L_21954616_SNP [dm6]	C	T	4.108e^-4	0.856	UPSTREAM CG7458 INTERGENIC	transposable element FlyBase
2L	3160276	2L_3160276_SNP [dm3] 2L_3160276_SNP [dm6]	T	C	4.110e^-4	0.856	SYNONYMOUS_CODING gkt UPSTREAM Mad	TF binding site BDTNP1_TFBS_dl
X	519125	X_519125_SNP [dm3] X_625092_SNP [dm6]	C	T	4.111e^-4	0.856	UTR_5_PRIME CG13364 UPSTREAM CR45475 & 1 other DOWNSTREAM CG13369	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21331952	3R_21331952_SNP [dm3] 3R_25506230_SNP [dm6]	T	A	4.113e^-4	0.856	UPSTREAM CG5111 DOWNSTREAM CG5107 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	8977451	2L_8977451_DEL [dm3] 2L_8977451_DEL [dm6]	TAAATAGAT	T	4.118e^-4	0.856	DOWNSTREAM CG13101 INTERGENIC
3L	11446486	3L_11446486_SNP [dm3] 3L_11453386_SNP [dm6]	G	T	4.119e^-4	0.856	INTERGENIC
2R	13739049	2R_13739049_SNP [dm3] 2R_17851544_SNP [dm6]	G	T	4.124e^-4	0.856	INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
3R	22551802	3R_22551802_SNP [dm3] 3R_26726080_SNP [dm6]	C	T	4.136e^-4	0.856	UPSTREAM CG14244 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
X	575949	X_575949_SNP [dm3] X_681916_SNP [dm6]	C	T	4.141e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	1666710	2L_1666710_SNP [dm3] 2L_1666710_SNP [dm6]	A	G	4.142e^-4	0.856	INTRON chinmo
X	578192	X_578192_SNP [dm3] X_684159_SNP [dm6]	A	G	4.150e^-4	0.856	INTERGENIC
3R	15952499	3R_15952499_SNP [dm3] 3R_20126777_SNP [dm6]	G	A	4.154e^-4	0.856	INTERGENIC
3L	15448391	3L_15448391_SNP [dm3] 3L_15455291_SNP [dm6]	C	T	4.157e^-4	0.856	INTERGENIC
3R	12356294	3R_12356294_DEL [dm3] 3R_16530572_DEL [dm6]	CG	C	4.158e^-4	0.856	INTRON CG42342	TF binding site BDTNP1_TFBS_dl
3R	2467579	3R_2467579_SNP [dm3] 3R_6641857_SNP [dm6]	A	G	4.160e^-4	0.856	DOWNSTREAM CG1315 INTRON CG31286	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6323340	X_6323340_SNP [dm3] X_6429307_SNP [dm6]	G	T	4.160e^-4	0.856	INTRON CG42340
3R	9973437	3R_9973437_SNP [dm3] 3R_14147715_SNP [dm6]	G	A	4.174e^-4	0.856	DOWNSTREAM CG14355 INTERGENIC
3R	9973438	3R_9973438_SNP [dm3] 3R_14147716_SNP [dm6]	T	A	4.174e^-4	0.856	DOWNSTREAM CG14355 INTERGENIC
2R	10139769	2R_10139769_SNP [dm3] 2R_14252264_SNP [dm6]	C	A	4.176e^-4	0.856	SYNONYMOUS_CODING Mdr50 DOWNSTREAM Hsc70-5
3L	1146605	3L_1146605_SNP [dm3] 3L_1146605_SNP [dm6]	T	C	4.179e^-4	0.856	INTRON bab2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17153259	2R_17153259_SNP [dm3] 2R_21265754_SNP [dm6]	A	G	4.181e^-4	0.856	SYNONYMOUS_CODING CG30391 DOWNSTREAM CG30393 INTRON Rgk3
2L	14974174	2L_14974174_SNP [dm3] 2L_14974174_SNP [dm6]	C	T	4.183e^-4	0.856	UPSTREAM CR45331 INTERGENIC
3R	15953949	3R_15953949_SNP [dm3] 3R_20128227_SNP [dm6]	G	A	4.185e^-4	0.856	INTERGENIC
3R	24175524	3R_24175524_SNP [dm3] 3R_28349802_SNP [dm6]	G	C	4.188e^-4	0.856	INTERGENIC
2L	3160436	2L_3160436_SNP [dm3] 2L_3160436_SNP [dm6]	G	A	4.207e^-4	0.856	NON_SYNONYMOUS_CODING gkt UPSTREAM Mad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	3047995	X_3047995_SNP [dm3] X_3153962_SNP [dm6]	C	T	4.213e^-4	0.856	INTRON N	TF binding site BDTNP1_TFBS_da
2L	14558042	2L_14558042_SNP [dm3] 2L_14558042_SNP [dm6]	A	G	4.214e^-4	0.856	EXON CR44854	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	557374	X_557374_SNP [dm3] X_663341_SNP [dm6]	G	C	4.216e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_sens
X	588050	X_588050_SNP [dm3] X_694017_SNP [dm6]	A	G	4.224e^-4	0.856	INTRON sdk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	1147301	3L_1147301_SNP [dm3] 3L_1147301_SNP [dm6]	C	T	4.237e^-4	0.856	INTRON bab2
3R	19915167	3R_19915167_INS [dm3] 3R_24089445_INS [dm6]	G	GA	4.240e^-4	0.856	INTRON 4EHP
3R	15953550	3R_15953550_INS [dm3] 3R_20127828_INS [dm6]	T	TCAATACACA	4.244e^-4	0.856	INTERGENIC
2L	6381420	2L_6381420_SNP [dm3] 2L_6381420_SNP [dm6]	A	G	4.251e^-4	0.856	SYNONYMOUS_CODING CG9507 INTRON CG42368	TF binding site mE1_TFBS_chinmo
2L	5070822	2L_5070822_SNP [dm3] 2L_5070822_SNP [dm6]	A	G	4.252e^-4	0.856	UPSTREAM RpL37A DOWNSTREAM CR45305 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2R	17491871	2R_17491871_SNP [dm3] 2R_21604366_SNP [dm6]	T	C	4.278e^-4	0.856	EXON CR45150
3L	3449104	3L_3449104_SNP [dm3] 3L_3449104_SNP [dm6]	T	C	4.279e^-4	0.856	INTRON eIF5B
3R	20212512	3R_20212512_SNP [dm3] 3R_24386790_SNP [dm6]	C	A	4.285e^-4	0.856	SYNONYMOUS_CODING CG5768 INTRON CG5768
3R	22814903	3R_22814903_SNP [dm3] 3R_26989181_SNP [dm6]	G	A	4.285e^-4	0.856	UPSTREAM CG31075 INTRON CG31076
X	556534	X_556534_SNP [dm3] X_662501_SNP [dm6]	A	G	4.285e^-4	0.856	INTERGENIC
2R	18179191	2R_18179191_SNP [dm3] 2R_22291686_SNP [dm6]	C	A	4.287e^-4	0.856	UPSTREAM CR43422 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20348213	3R_20348213_SNP [dm3] 3R_24522491_SNP [dm6]	C	T	4.294e^-4	0.856	UTR_3_PRIME CG13622 DOWNSTREAM Pp1alpha-96A	TF binding site BDTNP1_TFBS_dl
X	5593237	X_5593237_INS [dm3] X_5699204_INS [dm6]	T	TGTAT	4.299e^-4	0.856	UTR_5_PRIME CG4096 INTRON CG4096	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6029550	2L_6029550_SNP [dm3] 2L_6029550_SNP [dm6]	C	A	4.303e^-4	0.856	INTRON CG9109
3R	11343450	3R_11343450_SNP [dm3] 3R_15517728_SNP [dm6]	G	A	4.310e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8035435	2L_8035435_DEL [dm3] 2L_8035435_DEL [dm6]	CC	C	4.311e^-4	0.856	INTRON CG7367 & 1 other
2L	3160322	2L_3160322_SNP [dm3] 2L_3160322_SNP [dm6]	A	G	4.312e^-4	0.856	NON_SYNONYMOUS_CODING gkt UPSTREAM Mad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11054902	2R_11054902_SNP [dm3] 2R_15167397_SNP [dm6]	T	C	4.321e^-4	0.856	INTRON igl
3L	15729285	3L_15729285_SNP [dm3] 3L_15736185_SNP [dm6]	C	A	4.324e^-4	0.856	INTERGENIC
2L	12527988	2L_12527988_SNP [dm3] 2L_12527988_SNP [dm6]	C	A	4.325e^-4	0.856	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2223592	X_2223592_SNP [dm3] X_2329559_SNP [dm6]	C	A	4.330e^-4	0.856	UPSTREAM CR33218 DOWNSTREAM CG2854 INTRON phl
2L	18884223	2L_18884223_SNP [dm3] 2L_18884223_SNP [dm6]	T	G	4.332e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5308043	2L_5308043_SNP [dm3] 2L_5308043_SNP [dm6]	A	C	4.335e^-4	0.856	SYNONYMOUS_CODING vri	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16877741	2R_16877741_SNP [dm3] 2R_20990236_SNP [dm6]	A	T	4.345e^-4	0.856	INTRON CG3216	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	7469660	3L_7469660_SNP [dm3] 3L_7476560_SNP [dm6]	C	G	4.345e^-4	0.856	DOWNSTREAM CG43292 INTERGENIC
X	8287785	X_8287785_SNP [dm3] X_8393752_SNP [dm6]	G	A	4.346e^-4	0.856	INTERGENIC
2L	5148340	2L_5148340_SNP [dm3] 2L_5148340_SNP [dm6]	C	G	4.347e^-4	0.856	INTRON Msp300
X	4949575	X_4949575_SNP [dm3] X_5055542_SNP [dm6]	C	A	4.355e^-4	0.856	INTRON CR44833 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4814526	2R_4814526_SNP [dm3] 2R_8927021_SNP [dm6]	A	T	4.356e^-4	0.856	UTR_3_PRIME CG8235 DOWNSTREAM CG8237	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	5086671	2L_5086671_SNP [dm3] 2L_5086671_SNP [dm6]	C	T	4.356e^-4	0.856	INTRON pgant5
3L	4856345	3L_4856345_SNP [dm3] 3L_4856345_SNP [dm6]	A	G	4.359e^-4	0.856	INTERGENIC
3R	15953113	3R_15953113_SNP [dm3] 3R_20127391_SNP [dm6]	A	T	4.362e^-4	0.856	INTERGENIC
3L	8896890	3L_8896890_SNP [dm3] 3L_8903790_SNP [dm6]	T	C	4.363e^-4	0.856	DOWNSTREAM tRNA:T:Psi INTRON TrpA1
2R	12190065	2R_12190065_SNP [dm3] 2R_16302560_SNP [dm6]	G	A	4.364e^-4	0.856	EXON CR45232	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2447085	3R_2447085_SNP [dm3] 3R_6621363_SNP [dm6]	T	C	4.366e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7692459	2L_7692459_SNP [dm3] 2L_7692459_SNP [dm6]	G	A	4.374e^-4	0.856	UPSTREAM CG43235 INTRON CG7025	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2355378	2R_2355378_SNP [dm3] 2R_6467873_SNP [dm6]	T	A	4.377e^-4	0.856	INTERGENIC	transposable element FlyBase
2L	15014956	2L_15014956_SNP [dm3] 2L_15014956_SNP [dm6]	C	A	4.380e^-4	0.856	INTERGENIC
2L	16625000	2L_16625000_SNP [dm3] 2L_16625000_SNP [dm6]	T	C	4.380e^-4	0.856	INTRON CG42389
3L	7003423	3L_7003423_SNP [dm3] 3L_7010323_SNP [dm6]	T	A	4.382e^-4	0.856	INTRON Mp
2L	19134272	2L_19134272_INS [dm3] 2L_19134272_INS [dm6]	T	TT	4.387e^-4	0.856	UTR_5_PRIME brat UPSTREAM l_2_37Cg INTRON l_2_37Cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	16272297	X_16272297_SNP [dm3] X_16378264_SNP [dm6]	T	C	4.387e^-4	0.856	SYNONYMOUS_CODING Fur2 UTR_3_PRIME Fur2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12700931	3R_12700931_SNP [dm3] 3R_16875209_SNP [dm6]	G	C	4.391e^-4	0.856	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11478260	2R_11478260_SNP [dm3] 2R_15590755_SNP [dm6]	G	T	4.393e^-4	0.856	INTERGENIC
2L	2698323	2L_2698323_SNP [dm3] 2L_2698323_SNP [dm6]	A	G	4.393e^-4	0.856	INTRON CG31690
3R	15748644	3R_15748644_SNP [dm3] 3R_19922922_SNP [dm6]	G	C	4.397e^-4	0.856	SYNONYMOUS_CODING CG4462	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10881745	3L_10881745_SNP [dm3] 3L_10888645_SNP [dm6]	G	C	4.400e^-4	0.856	INTERGENIC
3L	14486018	3L_14486018_SNP [dm3] 3L_14492918_SNP [dm6]	G	C	4.407e^-4	0.856	INTRON bbg	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9121402	2L_9121402_SNP [dm3] 2L_9121402_SNP [dm6]	G	C	4.418e^-4	0.856	DOWNSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13785456	2R_13785456_SNP [dm3] 2R_17897951_SNP [dm6]	T	C	4.422e^-4	0.856	INTRON Elk	TF binding site BDTNP1_TFBS_twi
2R	13785457	2R_13785457_SNP [dm3] 2R_17897952_SNP [dm6]	A	G	4.422e^-4	0.856	INTRON Elk	TF binding site BDTNP1_TFBS_twi
3L	1357107	3L_1357107_DEL [dm3] 3L_1357107_DEL [dm6]	AC	T	4.424e^-4	0.856	INTRON Ptp61F
3L	7178185	3L_7178185_SNP [dm3] 3L_7185085_SNP [dm6]	G	T	4.435e^-4	0.856	INTRON Dscam2
2L	20538717	2L_20538717_SNP [dm3] 2L_20538717_SNP [dm6]	T	C	4.438e^-4	0.856	DOWNSTREAM CR45707 INTERGENIC
3L	21600407	3L_21600407_SNP [dm3] 3L_21607307_SNP [dm6]	G	C	4.444e^-4	0.856	UPSTREAM TfAP-2 INTRON TfAP-2
2L	14205608	2L_14205608_SNP [dm3] 2L_14205608_SNP [dm6]	T	A	4.444e^-4	0.856	INTRON Dyrk2
3R	6426177	3R_6426177_SNP [dm3] 3R_10600455_SNP [dm6]	C	G	4.445e^-4	0.856	INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10542516	2R_10542516_SNP [dm3] 2R_14655011_SNP [dm6]	T	C	4.459e^-4	0.856	INTERGENIC
2L	20943731	2L_20943731_SNP [dm3] 2L_20943731_SNP [dm6]	T	A	4.461e^-4	0.856	INTERGENIC
3R	24269106	3R_24269106_SNP [dm3] 3R_28443384_SNP [dm6]	G	A	4.461e^-4	0.856	INTRON beat-VI
2R	17445084	2R_17445084_SNP [dm3] 2R_21557579_SNP [dm6]	T	C	4.463e^-4	0.856	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17445957	2R_17445957_SNP [dm3] 2R_21558452_SNP [dm6]	C	T	4.463e^-4	0.856	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18472607	3R_18472607_SNP [dm3] 3R_22646885_SNP [dm6]	G	T	4.463e^-4	0.856	INTRON CG45058
2L	1353201	2L_1353201_SNP [dm3] 2L_1353201_SNP [dm6]	C	T	4.465e^-4	0.856	SYNONYMOUS_CODING CG5561 UPSTREAM CG5556 DOWNSTREAM CG31924
2L	5906976	2L_5906976_SNP [dm3] 2L_5906976_SNP [dm6]	C	T	4.471e^-4	0.856	UPSTREAM bchs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	3486277	3R_3486277_SNP [dm3] 3R_7660555_SNP [dm6]	G	T	4.472e^-4	0.856	INTRON Nlg1
3R	22089907	3R_22089907_SNP [dm3] 3R_26264185_SNP [dm6]	C	T	4.482e^-4	0.856	INTRON CG6154
2L	18351671	2L_18351671_SNP [dm3] 2L_18351671_SNP [dm6]	G	T	4.484e^-4	0.856	INTRON Fas3
2R	10139781	2R_10139781_SNP [dm3] 2R_14252276_SNP [dm6]	A	G	4.484e^-4	0.856	SYNONYMOUS_CODING Mdr50 DOWNSTREAM Hsc70-5
3L	11415328	3L_11415328_DEL [dm3] 3L_11422228_DEL [dm6]	CC	C	4.489e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10489564	3L_10489564_SNP [dm3] 3L_10496464_SNP [dm6]	T	A	4.490e^-4	0.856	INTRON A2bp1
2L	13040021	2L_13040021_SNP [dm3] 2L_13040021_SNP [dm6]	A	G	4.492e^-4	0.856	INTRON CG9932
3L	1146811	3L_1146811_SNP [dm3] 3L_1146811_SNP [dm6]	T	A	4.495e^-4	0.856	INTRON bab2	TF binding site mE1_TFBS_chinmo
3R	25956312	3R_25956312_SNP [dm3] 3R_30130590_SNP [dm6]	G	T	4.499e^-4	0.856	NON_SYNONYMOUS_CODING CG31029	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	569213	X_569213_SNP [dm3] X_675180_SNP [dm6]	A	G	4.508e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15768744	3L_15768744_SNP [dm3] 3L_15775644_SNP [dm6]	T	G	4.508e^-4	0.856	INTERGENIC
2L	9121554	2L_9121554_SNP [dm3] 2L_9121554_SNP [dm6]	T	A	4.514e^-4	0.856	DOWNSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12125004	3L_12125004_SNP [dm3] 3L_12131904_SNP [dm6]	T	A	4.519e^-4	0.856	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	9086695	2L_9086695_SNP [dm3] 2L_9086695_SNP [dm6]	G	A	4.520e^-4	0.856	NON_SYNONYMOUS_CODING Toll-4
X	19700328	X_19700328_SNP [dm3] X_19806295_SNP [dm6]	G	C	4.523e^-4	0.856	INTERGENIC
3L	18655513	3L_18655513_SNP [dm3] 3L_18662413_SNP [dm6]	C	A	4.530e^-4	0.856	INTRON MYPT-75D
2L	19965659	2L_19965659_SNP [dm3] 2L_19965659_SNP [dm6]	A	T	4.554e^-4	0.856	UTR_3_PRIME CG10680 DOWNSTREAM OS9 & 1 other
2L	7636060	2L_7636060_SNP [dm3] 2L_7636060_SNP [dm6]	A	G	4.568e^-4	0.856	UPSTREAM CR44799 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19321041	2L_19321041_SNP [dm3] 2L_19321041_SNP [dm6]	G	A	4.572e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7407798	2L_7407798_SNP [dm3] 2L_7407798_SNP [dm6]	C	A	4.574e^-4	0.856	DOWNSTREAM CG5181 INTRON CG5177
2L	15185218	2L_15185218_SNP [dm3] 2L_15185218_SNP [dm6]	C	T	4.576e^-4	0.856	INTRON CG4168
X	11681310	X_11681310_SNP [dm3] X_11787277_SNP [dm6]	C	T	4.582e^-4	0.856	UPSTREAM Karl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	20552676	2L_20552676_SNP [dm3] 2L_20552676_SNP [dm6]	C	A	4.584e^-4	0.856	INTERGENIC
X	578446	X_578446_SNP [dm3] X_684413_SNP [dm6]	C	G	4.585e^-4	0.856	INTERGENIC	transposable element FlyBase
X	4640195	X_4640195_SNP [dm3] X_4746162_SNP [dm6]	C	T	4.591e^-4	0.856	INTERGENIC
3R	15932347	3R_15932347_SNP [dm3] 3R_20106625_SNP [dm6]	A	T	4.601e^-4	0.856	DOWNSTREAM CG31206 INTERGENIC
2L	9114044	2L_9114044_SNP [dm3] 2L_9114044_SNP [dm6]	A	C	4.623e^-4	0.856	DOWNSTREAM Or30a INTERGENIC
2L	9280004	2L_9280004_SNP [dm3] 2L_9280004_SNP [dm6]	A	G	4.641e^-4	0.856	INTRON Ggamma30A
3L	16790391	3L_16790391_SNP [dm3] 3L_16797291_SNP [dm6]	G	A	4.643e^-4	0.856	INTRON CG9674
2L	18349930	2L_18349930_SNP [dm3] 2L_18349930_SNP [dm6]	G	A	4.643e^-4	0.856	INTRON Fas3
X	588419	X_588419_SNP [dm3] X_694386_SNP [dm6]	T	C	4.648e^-4	0.856	INTRON sdk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
2L	19965646	2L_19965646_SNP [dm3] 2L_19965646_SNP [dm6]	A	C	4.655e^-4	0.856	UTR_3_PRIME CG10680 DOWNSTREAM OS9 & 1 other
2R	19473004	2R_19473004_SNP [dm3] 2R_23585481_SNP [dm6]	C	T	4.658e^-4	0.856	INTRON apt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21284039	X_21284039_SNP [dm3] X_21413012_SNP [dm6]	C	A	4.669e^-4	0.856	INTERGENIC
2L	9121447	2L_9121447_SNP [dm3] 2L_9121447_SNP [dm6]	C	T	4.676e^-4	0.856	DOWNSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	21283755	X_21283755_SNP [dm3] X_21412728_SNP [dm6]	T	A	4.681e^-4	0.856	INTERGENIC
3L	15742174	3L_15742174_SNP [dm3] 3L_15749074_SNP [dm6]	T	C	4.690e^-4	0.856	DOWNSTREAM CR45240 INTERGENIC
X	558139	X_558139_DEL [dm3] X_664106_DEL [dm6]	GCAGC	G	4.692e^-4	0.856	INTERGENIC
3R	21404541	3R_21404541_DEL [dm3] 3R_25578819_DEL [dm6]	GGG	G	4.699e^-4	0.856	INTRON msi	TF binding site BDTNP1_TFBS_slp1
3R	15931986	3R_15931986_SNP [dm3] 3R_20106264_SNP [dm6]	G	C	4.699e^-4	0.856	DOWNSTREAM CG31206 INTERGENIC
2R	9079969	2R_9079969_SNP [dm3] 2R_13192464_SNP [dm6]	G	T	4.706e^-4	0.856	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14338110	2R_14338110_SNP [dm3] 2R_18450605_SNP [dm6]	G	A	4.710e^-4	0.856	SYNONYMOUS_CODING Prp19 UPSTREAM CG5190	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2891913	2L_2891913_SNP [dm3] 2L_2891913_SNP [dm6]	C	T	4.719e^-4	0.856	INTRON lilli
3R	22548417	3R_22548417_SNP [dm3] 3R_26722695_SNP [dm6]	G	A	4.719e^-4	0.856	SYNONYMOUS_CODING CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13566771	X_13566771_SNP [dm3] X_13672738_SNP [dm6]	A	G	4.725e^-4	0.856	SYNONYMOUS_CODING CG15760 INTRON CG15760	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	9117468	2L_9117468_SNP [dm3] 2L_9117468_SNP [dm6]	C	G	4.726e^-4	0.856	INTERGENIC
2L	588002	2L_588002_DEL [dm3] 2L_588002_DEL [dm6]	CCC	C	4.729e^-4	0.856	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
2R	10965523	2R_10965523_SNP [dm3] 2R_15078018_SNP [dm6]	C	T	4.736e^-4	0.856	INTERGENIC
3L	8522561	3L_8522561_SNP [dm3] 3L_8529461_SNP [dm6]	C	G	4.752e^-4	0.856	INTRON foi
3R	23208689	3R_23208689_SNP [dm3] 3R_27382967_SNP [dm6]	C	T	4.755e^-4	0.856	INTRON side
3L	3053756	3L_3053756_SNP [dm3] 3L_3053756_SNP [dm6]	C	T	4.761e^-4	0.856	INTRON CG1271	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1877218	3L_1877218_SNP [dm3] 3L_1877218_SNP [dm6]	T	G	4.762e^-4	0.856	UPSTREAM dre4 INTRON CG13937	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	22536998	3R_22536998_SNP [dm3] 3R_26711276_SNP [dm6]	G	A	4.765e^-4	0.856	INTRON amon
3L	2541889	3L_2541889_SNP [dm3] 3L_2541889_SNP [dm6]	C	A	4.769e^-4	0.856	INTRON Spn
X	10801058	X_10801058_SNP [dm3] X_10907025_SNP [dm6]	G	A	4.786e^-4	0.856	SYNONYMOUS_CODING CG43901	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15952009	3R_15952009_SNP [dm3] 3R_20126287_SNP [dm6]	C	A	4.792e^-4	0.856	INTERGENIC
X	11323880	X_11323880_SNP [dm3] X_11429847_SNP [dm6]	A	T	4.800e^-4	0.856	UTR_3_PRIME Gs2 DOWNSTREAM Evi5
3L	11428157	3L_11428157_SNP [dm3] 3L_11435057_SNP [dm6]	G	A	4.803e^-4	0.856	SYNONYMOUS_CODING CG6149 UPSTREAM CR44548	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	26817154	3R_26817154_SNP [dm3] 3R_30991432_SNP [dm6]	G	A	4.810e^-4	0.856	DOWNSTREAM CG31007 INTRON 5-HT7
2L	9122233	2L_9122233_SNP [dm3] 2L_9122233_SNP [dm6]	A	T	4.816e^-4	0.856	UPSTREAM CR44616 INTERGENIC
2L	7405323	2L_7405323_SNP [dm3] 2L_7405323_SNP [dm6]	T	A	4.819e^-4	0.856	SYNONYMOUS_CODING CG5177 DOWNSTREAM CG5171
X	561830	X_561830_SNP [dm3] X_667797_SNP [dm6]	C	G	4.819e^-4	0.856	INTERGENIC
2L	19676126	2L_19676126_SNP [dm3] 2L_19676126_SNP [dm6]	A	G	4.824e^-4	0.856	INTRON Lar
2R	19985577	2R_19985577_SNP [dm3] 2R_24098054_SNP [dm6]	A	G	4.824e^-4	0.856	INTRON gek	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6829070	2R_6829070_SNP [dm3] 2R_10941565_SNP [dm6]	T	C	4.841e^-4	0.856	SYNONYMOUS_CODING Spn47C
2R	17432949	2R_17432949_SNP [dm3] 2R_21545444_SNP [dm6]	A	G	4.842e^-4	0.856	INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19593629	3R_19593629_SNP [dm3] 3R_23767907_SNP [dm6]	A	T	4.846e^-4	0.856	UPSTREAM CG10214 DOWNSTREAM tst INTRON CG10375	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	7542481	3L_7542481_SNP [dm3] 3L_7549381_SNP [dm6]	G	A	4.853e^-4	0.856	INTERGENIC
3L	13696381	3L_13696381_SNP [dm3] 3L_13703281_SNP [dm6]	T	G	4.854e^-4	0.856	INTRON bru-3
X	6969295	X_6969295_SNP [dm3] X_7075262_SNP [dm6]	T	C	4.865e^-4	0.856	UTR_3_PRIME Sxl DOWNSTREAM Sxl
3L	7542469	3L_7542469_SNP [dm3] 3L_7549369_SNP [dm6]	C	G	4.865e^-4	0.856	INTERGENIC
3R	4968293	3R_4968293_SNP [dm3] 3R_9142571_SNP [dm6]	G	T	4.868e^-4	0.856	INTRON pum
2L	8978987	2L_8978987_SNP [dm3] 2L_8978987_SNP [dm6]	T	C	4.872e^-4	0.856	NON_SYNONYMOUS_CODING CG13101
2L	15080528	2L_15080528_INS [dm3] 2L_15080528_INS [dm6]	CT	AATA	4.882e^-4	0.856	INTRON CG15270
2L	15176187	2L_15176187_DEL [dm3] 2L_15176187_DEL [dm6]	CC	C	4.889e^-4	0.856	INTRON CG4168
2L	1412304	2L_1412304_SNP [dm3] 2L_1412304_SNP [dm6]	G	A	4.895e^-4	0.856	INTRON lea	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	3477419	2L_3477419_SNP [dm3] 2L_3477419_SNP [dm6]	C	A	4.897e^-4	0.856	EXON CR43928	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13630533	2R_13630533_SNP [dm3] 2R_17743028_SNP [dm6]	T	A	4.898e^-4	0.856	INTRON CG4996
X	539807	X_539807_SNP [dm3] X_645774_SNP [dm6]	G	T	4.901e^-4	0.856	NON_SYNONYMOUS_CODING CG13367	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15448397	3L_15448397_SNP [dm3] 3L_15455297_SNP [dm6]	C	A	4.904e^-4	0.856	INTERGENIC
3L	7542462	3L_7542462_SNP [dm3] 3L_7549362_SNP [dm6]	G	T	4.906e^-4	0.856	INTERGENIC
2R	14564380	2R_14564380_SNP [dm3] 2R_18676875_SNP [dm6]	C	T	4.921e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	537413	X_537413_SNP [dm3] X_643380_SNP [dm6]	C	T	4.927e^-4	0.856	UTR_3_PRIME su_s_ UPSTREAM CR44839
3L	16235775	3L_16235775_SNP [dm3] 3L_16242675_SNP [dm6]	A	G	4.933e^-4	0.856	INTERGENIC
2L	9637855	2L_9637855_SNP [dm3] 2L_9637855_SNP [dm6]	T	G	4.939e^-4	0.856	INTRON Apoltp
2L	9079671	2L_9079671_SNP [dm3] 2L_9079671_SNP [dm6]	T	A	4.947e^-4	0.856	INTERGENIC
2L	19200111	2L_19200111_SNP [dm3] 2L_19200111_SNP [dm6]	C	T	4.956e^-4	0.856	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27066044	3R_27066044_SNP [dm3] 3R_31240322_SNP [dm6]	A	C	4.958e^-4	0.856	INTRON qless
3R	25601378	3R_25601378_INS [dm3] 3R_29775656_INS [dm6]	T	TCACT	4.967e^-4	0.856	INTRON kay	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	2897370	X_2897370_SNP [dm3] X_3003337_SNP [dm6]	A	G	4.969e^-4	0.856	INTRON kirre

By genomic position
Variant impact
Gene name

W6 Vial 4 ascension (cm) phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results