DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.037e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2299 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	467798	X_467798_SNP [dm3] X_573765_SNP [dm6]	A	T	3.988e^-6	0.657	INTRON Appl
2L	5887991	2L_5887991_SNP [dm3] 2L_5887991_SNP [dm6]	A	G	5.516e^-6	0.657	UPSTREAM CR44578 & 1 other INTERGENIC
3L	4510693	3L_4510693_SNP [dm3] 3L_4510693_SNP [dm6]	A	C	5.880e^-6	0.657	DOWNSTREAM Tie INTERGENIC
X	19037553	X_19037553_SNP [dm3] X_19143520_SNP [dm6]	A	C	6.092e^-6	0.657	UTR_3_PRIME RhoGAP18B
2L	6958889	2L_6958889_SNP [dm3] 2L_6958889_SNP [dm6]	T	C	6.430e^-6	0.657	SYNONYMOUS_CODING CG3430 DOWNSTREAM Atac1
3R	7089271	3R_7089271_DEL [dm3] 3R_11263549_DEL [dm6]	CT	C	6.526e^-6	0.657	INTERGENIC
2L	8737357	2L_8737357_SNP [dm3] 2L_8737357_SNP [dm6]	A	T	6.820e^-6	0.657	INTRON raw
3R	7089275	3R_7089275_DEL [dm3] 3R_11263553_DEL [dm6]	GCCCCGCACCATGATTTCAG...	G	7.521e^-6	0.657	INTERGENIC
3L	8598259	3L_8598259_SNP [dm3] 3L_8605159_SNP [dm6]	C	T	7.793e^-6	0.657	INTRON CG6282	TF binding site BDTNP1_TFBS_dl
3R	16616922	3R_16616922_SNP [dm3] 3R_20791200_SNP [dm6]	C	T	8.397e^-6	0.657	INTRON Syp
3L	4511269	3L_4511269_SNP [dm3] 3L_4511269_SNP [dm6]	A	G	8.456e^-6	0.657	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	14138975	2R_14138975_SNP [dm3] 2R_18251470_SNP [dm6]	C	G	8.470e^-6	0.657	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7855979	3R_7855979_SNP [dm3] 3R_12030257_SNP [dm6]	T	G	8.785e^-6	0.657	SYNONYMOUS_CODING CG31358 UTR_5_PRIME CG42505 & 1 other
3L	4510654	3L_4510654_SNP [dm3] 3L_4510654_SNP [dm6]	T	A	9.650e^-6	0.657	DOWNSTREAM Tie INTERGENIC
3L	4511272	3L_4511272_SNP [dm3] 3L_4511272_SNP [dm6]	G	A	9.762e^-6	0.657	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	15763843	3L_15763843_SNP [dm3] 3L_15770743_SNP [dm6]	C	T	9.986e^-6	0.657	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19259131	X_19259131_SNP [dm3] X_19365098_SNP [dm6]	C	T	1.021e^-5	0.657	INTRON kek5
2R	16992686	2R_16992686_SNP [dm3] 2R_21105181_SNP [dm6]	T	G	1.025e^-5	0.657	INTRON ktub	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	465935	X_465935_SNP [dm3] X_571902_SNP [dm6]	G	A	1.057e^-5	0.657	SYNONYMOUS_CODING Appl	TF binding site mE1_TFBS_sens
2R	14138980	2R_14138980_SNP [dm3] 2R_18251475_SNP [dm6]	T	A	1.066e^-5	0.657	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	468920	X_468920_SNP [dm3] X_574887_SNP [dm6]	T	A	1.091e^-5	0.657	INTRON Appl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7821876	3R_7821876_SNP [dm3] 3R_11996154_SNP [dm6]	A	T	1.128e^-5	0.657	INTRON Tk
3R	7833573	3R_7833573_SNP [dm3] 3R_12007851_SNP [dm6]	T	C	1.128e^-5	0.657	UTR_3_PRIME KLHL18 DOWNSTREAM KLHL18
3R	7833808	3R_7833808_SNP [dm3] 3R_12008086_SNP [dm6]	C	A	1.128e^-5	0.657	DOWNSTREAM KLHL18 INTRON KLHL18
3R	7847530	3R_7847530_SNP [dm3] 3R_12021808_SNP [dm6]	A	G	1.139e^-5	0.657	INTERGENIC
3R	7856485	3R_7856485_SNP [dm3] 3R_12030763_SNP [dm6]	A	C	1.139e^-5	0.657	INTRON CG31358 & 2 others
3R	7878994	3R_7878994_SNP [dm3] 3R_12053272_SNP [dm6]	A	T	1.139e^-5	0.657	INTERGENIC
3R	7882462	3R_7882462_SNP [dm3] 3R_12056740_SNP [dm6]	C	T	1.139e^-5	0.657	INTERGENIC
2R	17153259	2R_17153259_SNP [dm3] 2R_21265754_SNP [dm6]	A	G	1.159e^-5	0.657	SYNONYMOUS_CODING CG30391 DOWNSTREAM CG30393 INTRON Rgk3
3L	4510450	3L_4510450_SNP [dm3] 3L_4510450_SNP [dm6]	T	C	1.175e^-5	0.657	DOWNSTREAM Tie INTERGENIC
3R	7827966	3R_7827966_SNP [dm3] 3R_12002244_SNP [dm6]	A	G	1.203e^-5	0.657	INTRON Tk & 1 other
3R	7841534	3R_7841534_SNP [dm3] 3R_12015812_SNP [dm6]	G	A	1.213e^-5	0.657	SYNONYMOUS_CODING CG3313 DOWNSTREAM GCC185	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	7856690	3R_7856690_SNP [dm3] 3R_12030968_SNP [dm6]	C	G	1.214e^-5	0.657	INTRON CG31358 & 2 others
2R	9240476	2R_9240476_SNP [dm3] 2R_13352971_SNP [dm6]	A	G	1.252e^-5	0.657	DOWNSTREAM CG17048 INTRON CR44206
3L	10839515	3L_10839515_SNP [dm3] 3L_10846415_SNP [dm6]	A	C	1.288e^-5	0.657	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
3L	8598288	3L_8598288_SNP [dm3] 3L_8605188_SNP [dm6]	A	G	1.310e^-5	0.657	INTRON CG6282	TF binding site BDTNP1_TFBS_dl
3R	12493888	3R_12493888_SNP [dm3] 3R_16668166_SNP [dm6]	T	G	1.344e^-5	0.657	INTRON Ubx	TF binding site mE1_TFBS_HSA
3R	7865038	3R_7865038_SNP [dm3] 3R_12039316_SNP [dm6]	A	G	1.373e^-5	0.657	INTERGENIC
2L	8507662	2L_8507662_SNP [dm3] 2L_8507662_SNP [dm6]	A	T	1.390e^-5	0.657	UPSTREAM Dh31 INTERGENIC
X	468919	X_468919_SNP [dm3] X_574886_SNP [dm6]	C	T	1.402e^-5	0.657	SPLICE_SITE_REGION Appl INTRON Appl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11416864	2R_11416864_SNP [dm3] 2R_15529359_SNP [dm6]	A	T	1.592e^-5	0.696	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10789201	3L_10789201_SNP [dm3] 3L_10796101_SNP [dm6]	C	G	1.603e^-5	0.696	DOWNSTREAM CR44546 INTERGENIC
2L	4044015	2L_4044015_SNP [dm3] 2L_4044015_SNP [dm6]	C	G	1.697e^-5	0.696	INTRON ed
3L	4510169	3L_4510169_SNP [dm3] 3L_4510169_SNP [dm6]	A	T	1.758e^-5	0.696	DOWNSTREAM Tie INTERGENIC
3R	14320182	3R_14320182_SNP [dm3] 3R_18494460_SNP [dm6]	C	T	1.766e^-5	0.696	INTRON fru
2L	16126312	2L_16126312_SNP [dm3] 2L_16126312_SNP [dm6]	T	G	1.815e^-5	0.696	INTERGENIC
2R	10631248	2R_10631248_SNP [dm3] 2R_14743743_SNP [dm6]	A	G	1.815e^-5	0.696	INTRON CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12145182	2L_12145182_SNP [dm3] 2L_12145182_SNP [dm6]	A	G	1.823e^-5	0.696	UTR_5_PRIME CG31760
3L	4178234	3L_4178234_SNP [dm3] 3L_4178234_SNP [dm6]	G	T	1.914e^-5	0.696	UTR_5_PRIME Teh4 DOWNSTREAM Teh2 INTRON CG18675
3L	10839701	3L_10839701_SNP [dm3] 3L_10846601_SNP [dm6]	G	A	1.933e^-5	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	10138932	3R_10138932_SNP [dm3] 3R_14313210_SNP [dm6]	G	A	1.944e^-5	0.696	SYNONYMOUS_CODING CG31321
3L	4510237	3L_4510237_SNP [dm3] 3L_4510237_SNP [dm6]	A	C	1.961e^-5	0.696	DOWNSTREAM Tie INTERGENIC
2L	10207344	2L_10207344_SNP [dm3] 2L_10207344_SNP [dm6]	T	A	2.019e^-5	0.696	SYNONYMOUS_CODING CG5731 UPSTREAM CG5734	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk
X	3319195	X_3319195_DEL [dm3] X_3425162_DEL [dm6]	CGAAA	C	2.071e^-5	0.696	INTRON CR44999 & 1 other
3L	4178141	3L_4178141_SNP [dm3] 3L_4178141_SNP [dm6]	A	T	2.084e^-5	0.696	UTR_5_PRIME Teh4 DOWNSTREAM Teh2 INTRON CG18675
2L	5087615	2L_5087615_SNP [dm3] 2L_5087615_SNP [dm6]	C	G	2.084e^-5	0.696	INTRON pgant5
3L	4178215	3L_4178215_SNP [dm3] 3L_4178215_SNP [dm6]	G	A	2.189e^-5	0.696	UTR_5_PRIME Teh4 DOWNSTREAM Teh2 INTRON CG18675
3L	13122446	3L_13122446_SNP [dm3] 3L_13129346_SNP [dm6]	G	C	2.275e^-5	0.696	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12699380	2L_12699380_SNP [dm3] 2L_12699380_SNP [dm6]	G	A	2.295e^-5	0.696	SYNONYMOUS_CODING CG17036 DOWNSTREAM PICK1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	14643332	3R_14643332_SNP [dm3] 3R_18817610_SNP [dm6]	C	G	2.405e^-5	0.696	INTRON CG18208
3R	22882230	3R_22882230_SNP [dm3] 3R_27056508_SNP [dm6]	T	C	2.431e^-5	0.696	INTRON RYa-R	TF binding site mE1_TFBS_inv
X	19259130	X_19259130_SNP [dm3] X_19365097_SNP [dm6]	A	G	2.448e^-5	0.696	INTRON kek5
3L	10839517	3L_10839517_SNP [dm3] 3L_10846417_SNP [dm6]	C	G	2.486e^-5	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
3L	4113673	3L_4113673_SNP [dm3] 3L_4113673_SNP [dm6]	A	G	2.506e^-5	0.696	SYNONYMOUS_CODING Ack DOWNSTREAM Chd64	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12134359	2L_12134359_SNP [dm3] 2L_12134359_SNP [dm6]	C	T	2.520e^-5	0.696	UPSTREAM rho-6 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	4510651	3L_4510651_SNP [dm3] 3L_4510651_SNP [dm6]	A	G	2.544e^-5	0.696	DOWNSTREAM Tie INTERGENIC
3R	21520393	3R_21520393_SNP [dm3] 3R_25694671_SNP [dm6]	A	G	2.546e^-5	0.696	INTERGENIC
2R	15699384	2R_15699384_SNP [dm3] 2R_19811879_SNP [dm6]	G	A	2.565e^-5	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9687286	3R_9687286_SNP [dm3] 3R_13861564_SNP [dm6]	A	G	2.582e^-5	0.696	INTERGENIC
3L	14722708	3L_14722708_SNP [dm3] 3L_14729608_SNP [dm6]	C	T	2.624e^-5	0.696	DOWNSTREAM CG13473 INTRON ome
3L	7904086	3L_7904086_SNP [dm3] 3L_7910986_SNP [dm6]	A	T	2.686e^-5	0.696	INTRON pbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	7872565	3R_7872565_SNP [dm3] 3R_12046843_SNP [dm6]	G	A	2.690e^-5	0.696	INTERGENIC
2L	6187849	2L_6187849_SNP [dm3] 2L_6187849_SNP [dm6]	C	A	2.798e^-5	0.696	INTRON CG34380	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	21934277	X_21934277_SNP [dm3] X_22532441_SNP [dm6]	T	C	2.930e^-5	0.696	SYNONYMOUS_CODING S6kII INTRON CG17600
3R	16324107	3R_16324107_SNP [dm3] 3R_20498385_SNP [dm6]	C	T	3.001e^-5	0.696	INTERGENIC
3L	4510079	3L_4510079_SNP [dm3] 3L_4510079_SNP [dm6]	A	T	3.037e^-5	0.696	DOWNSTREAM Tie INTERGENIC
3R	22882499	3R_22882499_SNP [dm3] 3R_27056777_SNP [dm6]	G	A	3.069e^-5	0.696	SPLICE_SITE_REGION RYa-R INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10839419	3L_10839419_SNP [dm3] 3L_10846319_SNP [dm6]	A	G	3.107e^-5	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10135727	2R_10135727_SNP [dm3] 2R_14248222_SNP [dm6]	C	A	3.126e^-5	0.696	SYNONYMOUS_CODING Mdr50
3L	4178099	3L_4178099_SNP [dm3] 3L_4178099_SNP [dm6]	T	C	3.129e^-5	0.696	UTR_5_PRIME Teh4 DOWNSTREAM Teh2 INTRON CG18675
3L	10839718	3L_10839718_SNP [dm3] 3L_10846618_SNP [dm6]	T	G	3.151e^-5	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	18808791	3R_18808791_SNP [dm3] 3R_22983069_SNP [dm6]	G	A	3.200e^-5	0.696	SYNONYMOUS_CODING Nha2
3R	7876476	3R_7876476_SNP [dm3] 3R_12050754_SNP [dm6]	G	A	3.309e^-5	0.696	INTERGENIC
3L	2867646	3L_2867646_SNP [dm3] 3L_2867646_SNP [dm6]	C	T	3.321e^-5	0.696	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7870290	3R_7870290_SNP [dm3] 3R_12044568_SNP [dm6]	A	T	3.346e^-5	0.696	INTERGENIC
3R	7871953	3R_7871953_SNP [dm3] 3R_12046231_SNP [dm6]	A	G	3.346e^-5	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7880771	3R_7880771_SNP [dm3] 3R_12055049_SNP [dm6]	C	G	3.346e^-5	0.696	INTERGENIC
3L	4158298	3L_4158298_SNP [dm3] 3L_4158298_SNP [dm6]	G	C	3.349e^-5	0.696	INTRON nab	TF binding site BDTNP1_TFBS_dl
3R	12260571	3R_12260571_SNP [dm3] 3R_16434849_SNP [dm6]	T	C	3.448e^-5	0.696	UPSTREAM CG14881 DOWNSTREAM CG17565 INTERGENIC
3R	9853016	3R_9853016_SNP [dm3] 3R_14027294_SNP [dm6]	C	T	3.467e^-5	0.696	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12268816	3R_12268816_SNP [dm3] 3R_16443094_SNP [dm6]	A	G	3.493e^-5	0.696	UPSTREAM CG14882 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	9133443	2L_9133443_SNP [dm3] 2L_9133443_SNP [dm6]	A	T	3.504e^-5	0.696	INTRON CG32982
2L	10207407	2L_10207407_SNP [dm3] 2L_10207407_SNP [dm6]	A	G	3.523e^-5	0.696	SYNONYMOUS_CODING CG5731 UPSTREAM CG5734	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk
3L	10789198	3L_10789198_SNP [dm3] 3L_10796098_SNP [dm6]	C	T	3.547e^-5	0.696	DOWNSTREAM CR44546 INTERGENIC
3L	10789209	3L_10789209_SNP [dm3] 3L_10796109_SNP [dm6]	T	A	3.564e^-5	0.696	DOWNSTREAM CR44546 INTERGENIC
3L	10789218	3L_10789218_MNP [dm3] 3L_10796118_MNP [dm6]	AAA	TTT	3.564e^-5	0.696	DOWNSTREAM CR44546 INTERGENIC
2R	12833592	2R_12833592_SNP [dm3] 2R_16946087_SNP [dm6]	T	C	3.726e^-5	0.703	SYNONYMOUS_CODING CG15614 DOWNSTREAM Pkc53E & 1 other	TF binding site mE1_TFBS_HSA
2L	6966042	2L_6966042_INS [dm3] 2L_6966042_INS [dm6]	T	TTGTACATT	3.731e^-5	0.703	DOWNSTREAM smt3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	3953888	3L_3953888_SNP [dm3] 3L_3953888_SNP [dm6]	C	G	3.731e^-5	0.703	DOWNSTREAM CG12605 INTERGENIC
2L	5888020	2L_5888020_SNP [dm3] 2L_5888020_SNP [dm6]	T	G	3.813e^-5	0.703	UPSTREAM CR44578 & 1 other INTERGENIC
3L	1238337	3L_1238337_SNP [dm3] 3L_1238337_SNP [dm6]	A	T	3.929e^-5	0.703	UPSTREAM CG9192 INTRON CG9194	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	18824451	3R_18824451_SNP [dm3] 3R_22998729_SNP [dm6]	T	A	3.948e^-5	0.703	UPSTREAM Nha2 DOWNSTREAM CR43454 INTERGENIC
3L	10789212	3L_10789212_SNP [dm3] 3L_10796112_SNP [dm6]	G	T	3.974e^-5	0.703	DOWNSTREAM CR44546 INTERGENIC
3L	10839899	3L_10839899_INS [dm3] 3L_10846799_INS [dm6]	T	TT	4.123e^-5	0.703	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
X	463822	X_463822_SNP [dm3] X_569789_SNP [dm6]	T	C	4.138e^-5	0.703	UPSTREAM mir-4960 INTRON Appl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10672102	2R_10672102_SNP [dm3] 2R_14784597_SNP [dm6]	C	A	4.169e^-5	0.703	INTRON kn	TF binding site mE1_TFBS_inv
2L	18722165	2L_18722165_SNP [dm3] 2L_18722165_SNP [dm6]	C	T	4.201e^-5	0.703	INTRON CG10348
2L	20011537	2L_20011537_SNP [dm3] 2L_20011537_SNP [dm6]	T	A	4.261e^-5	0.703	INTRON CG43861
X	558924	X_558924_INS [dm3] X_664891_INS [dm6]	T	TTT	4.330e^-5	0.703	INTERGENIC
3L	8632228	3L_8632228_SNP [dm3] 3L_8639128_SNP [dm6]	G	A	4.399e^-5	0.703	DOWNSTREAM Zasp66 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	557436	X_557436_SNP [dm3] X_663403_SNP [dm6]	A	T	4.445e^-5	0.703	INTERGENIC	TF binding site mE1_TFBS_sens
3L	4510936	3L_4510936_SNP [dm3] 3L_4510936_SNP [dm6]	G	A	4.513e^-5	0.703	UTR_3_PRIME Tie
X	13283330	X_13283330_INS [dm3] X_13389297_INS [dm6]	A	ACTCTAACTGA...	4.522e^-5	0.703	UTR_3_PRIME CG1662 DOWNSTREAM CG1662 & 1 other
3L	4421290	3L_4421290_SNP [dm3] 3L_4421290_SNP [dm6]	A	G	4.543e^-5	0.703	UPSTREAM CG15020 DOWNSTREAM DOR INTERGENIC
3R	20508819	3R_20508819_SNP [dm3] 3R_24683097_SNP [dm6]	A	G	4.544e^-5	0.703	INTRON slo
2L	4904604	2L_4904604_SNP [dm3] 2L_4904604_SNP [dm6]	C	T	4.555e^-5	0.703	SYNONYMOUS_CODING CG2837 DOWNSTREAM CG3036	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13178515	3R_13178515_SNP [dm3] 3R_17352793_SNP [dm6]	T	C	4.617e^-5	0.703	INTRON beat-IIa
3R	10139244	3R_10139244_SNP [dm3] 3R_14313522_SNP [dm6]	T	G	4.619e^-5	0.703	SYNONYMOUS_CODING CG31321
3L	15122989	3L_15122989_SNP [dm3] 3L_15129889_SNP [dm6]	A	G	4.649e^-5	0.703	NON_SYNONYMOUS_CODING CG13457	TF binding site mE1_TFBS_HSA
2L	12134351	2L_12134351_SNP [dm3] 2L_12134351_SNP [dm6]	C	T	4.675e^-5	0.703	UPSTREAM rho-6 INTERGENIC
3R	4939119	3R_4939119_SNP [dm3] 3R_9113397_SNP [dm6]	T	C	4.709e^-5	0.703	INTRON pum
3L	10839130	3L_10839130_SNP [dm3] 3L_10846030_SNP [dm6]	C	T	4.723e^-5	0.703	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	15729285	3L_15729285_SNP [dm3] 3L_15736185_SNP [dm6]	C	A	4.765e^-5	0.703	INTERGENIC
2R	11471353	2R_11471353_SNP [dm3] 2R_15583848_SNP [dm6]	C	A	4.768e^-5	0.703	INTERGENIC
X	17896759	X_17896759_SNP [dm3] X_18002726_SNP [dm6]	A	G	4.803e^-5	0.703	INTRON Sh
X	602144	X_602144_SNP [dm3] X_708111_SNP [dm6]	C	G	4.871e^-5	0.703	INTRON sdk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22882090	3R_22882090_SNP [dm3] 3R_27056368_SNP [dm6]	A	G	4.884e^-5	0.703	INTRON RYa-R	TF binding site mE1_TFBS_inv
3L	4102998	3L_4102998_SNP [dm3] 3L_4102998_SNP [dm6]	T	A	4.924e^-5	0.703	SPLICE_SITE_REGION CG14995 UTR_5_PRIME CG14995 UPSTREAM CG14995 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8889595	3L_8889595_SNP [dm3] 3L_8896495_SNP [dm6]	G	T	4.972e^-5	0.703	INTRON TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19358394	3R_19358394_SNP [dm3] 3R_23532672_SNP [dm6]	A	T	4.997e^-5	0.703	DOWNSTREAM CG10170 INTERGENIC
3L	10836909	3L_10836909_SNP [dm3] 3L_10843809_SNP [dm6]	T	C	5.047e^-5	0.703	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	9634221	3L_9634221_SNP [dm3] 3L_9641121_SNP [dm6]	G	A	5.075e^-5	0.703	SYNONYMOUS_CODING CG18180 DOWNSTREAM CG18179 INTRON fry	TF binding site mE1_TFBS_cad
3L	4510646	3L_4510646_SNP [dm3] 3L_4510646_SNP [dm6]	A	C	5.148e^-5	0.703	DOWNSTREAM Tie INTERGENIC
3R	16324163	3R_16324163_SNP [dm3] 3R_20498441_SNP [dm6]	T	G	5.164e^-5	0.703	INTERGENIC
3L	10836873	3L_10836873_SNP [dm3] 3L_10843773_SNP [dm6]	A	G	5.229e^-5	0.703	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	1238329	3L_1238329_SNP [dm3] 3L_1238329_SNP [dm6]	C	G	5.253e^-5	0.703	UPSTREAM CG9192 INTRON CG9194	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	17684265	3R_17684265_SNP [dm3] 3R_21858543_SNP [dm6]	A	G	5.256e^-5	0.703	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4510046	3L_4510046_SNP [dm3] 3L_4510046_SNP [dm6]	A	T	5.276e^-5	0.703	DOWNSTREAM Tie INTERGENIC
2L	8646897	2L_8646897_SNP [dm3] 2L_8646897_SNP [dm6]	G	A	5.287e^-5	0.703	INTRON Sema-1a
3L	11138519	3L_11138519_SNP [dm3] 3L_11145419_SNP [dm6]	T	C	5.343e^-5	0.703	INTRON CG32082
3R	22517460	3R_22517460_SNP [dm3] 3R_26691738_SNP [dm6]	A	T	5.392e^-5	0.703	DOWNSTREAM TwdlQ INTERGENIC
3R	7822136	3R_7822136_SNP [dm3] 3R_11996414_SNP [dm6]	A	G	5.407e^-5	0.703	INTRON Tk
3R	7822161	3R_7822161_DEL [dm3] 3R_11996439_DEL [dm6]	GT	G	5.407e^-5	0.703	INTRON Tk
3R	7822163	3R_7822163_DEL [dm3] 3R_11996441_DEL [dm6]	GT	G	5.407e^-5	0.703	INTRON Tk
2L	6932945	2L_6932945_SNP [dm3] 2L_6932945_SNP [dm6]	A	T	5.498e^-5	0.703	SYNONYMOUS_CODING CG18304 DOWNSTREAM Hrb27C & 1 other	TF binding site mE1_TFBS_cad
3L	10789241	3L_10789241_MNP [dm3] 3L_10796141_MNP [dm6]	CGC	AAA	5.549e^-5	0.703	DOWNSTREAM CR44546 INTERGENIC
3L	8889598	3L_8889598_SNP [dm3] 3L_8896498_SNP [dm6]	C	T	5.622e^-5	0.703	INTRON TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12145188	2L_12145188_SNP [dm3] 2L_12145188_SNP [dm6]	G	A	5.660e^-5	0.703	UTR_5_PRIME CG31760
2L	1844748	2L_1844748_SNP [dm3] 2L_1844748_SNP [dm6]	A	C	5.667e^-5	0.703	INTRON wry
X	558934	X_558934_SNP [dm3] X_664901_SNP [dm6]	A	G	5.743e^-5	0.703	INTERGENIC
X	498295	X_498295_SNP [dm3] X_604262_SNP [dm6]	A	G	5.814e^-5	0.703	INTRON CG13366
2R	7911967	2R_7911967_SNP [dm3] 2R_12024462_SNP [dm6]	G	T	5.853e^-5	0.703	NON_SYNONYMOUS_CODING CG8964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10789246	3L_10789246_MNP [dm3] 3L_10796146_MNP [dm6]	TAT	CGA	5.878e^-5	0.703	DOWNSTREAM CR44546 INTERGENIC
2L	6819779	2L_6819779_SNP [dm3] 2L_6819779_SNP [dm6]	C	T	5.947e^-5	0.703	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_D
X	6252878	X_6252878_SNP [dm3] X_6358845_SNP [dm6]	G	C	5.970e^-5	0.703	INTRON kdn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10789177	3L_10789177_SNP [dm3] 3L_10796077_SNP [dm6]	G	C	5.994e^-5	0.703	DOWNSTREAM CR44546 INTERGENIC
3L	10789206	3L_10789206_SNP [dm3] 3L_10796106_SNP [dm6]	G	A	6.021e^-5	0.703	DOWNSTREAM CR44546 INTERGENIC
X	517109	X_517109_SNP [dm3] X_623076_SNP [dm6]	A	G	6.034e^-5	0.703	UPSTREAM CG13369 DOWNSTREAM mod_r_ INTERGENIC
3R	16324011	3R_16324011_DEL [dm3] 3R_20498289_DEL [dm6]	CGC	C	6.054e^-5	0.703	INTERGENIC
2R	17604142	2R_17604142_SNP [dm3] 2R_21716637_SNP [dm6]	G	T	6.075e^-5	0.703	UTR_3_PRIME HmgD DOWNSTREAM Tango11 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	18718835	2L_18718835_SNP [dm3] 2L_18718835_SNP [dm6]	C	A	6.103e^-5	0.703	INTRON CG10348
3R	15610318	3R_15610318_SNP [dm3] 3R_19784596_SNP [dm6]	A	G	6.123e^-5	0.703	NON_SYNONYMOUS_CODING CG11453	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10789223	3L_10789223_SNP [dm3] 3L_10796123_SNP [dm6]	G	T	6.198e^-5	0.703	DOWNSTREAM CR44546 INTERGENIC
2R	5910685	2R_5910685_SNP [dm3] 2R_10023180_SNP [dm6]	A	T	6.210e^-5	0.703	INTRON Pka-R2
3R	12954893	3R_12954893_SNP [dm3] 3R_17129171_SNP [dm6]	C	A	6.247e^-5	0.703	DOWNSTREAM CG31269 & 2 others INTERGENIC
2R	16512063	2R_16512063_SNP [dm3] 2R_20624558_SNP [dm6]	A	G	6.253e^-5	0.703	NON_SYNONYMOUS_CODING CG16742	TF binding site mE1_TFBS_sens
2L	5488815	2L_5488815_SNP [dm3] 2L_5488815_SNP [dm6]	C	T	6.262e^-5	0.703	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	14655427	3R_14655427_SNP [dm3] 3R_18829705_SNP [dm6]	A	T	6.393e^-5	0.71	INTRON CG18208
X	517668	X_517668_SNP [dm3] X_623635_SNP [dm6]	A	G	6.464e^-5	0.71	UTR_5_PRIME CG13369 DOWNSTREAM mod_r_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10789252	3L_10789252_SNP [dm3] 3L_10796152_SNP [dm6]	A	C	6.544e^-5	0.71	DOWNSTREAM CR44546 INTERGENIC
2R	18358080	2R_18358080_SNP [dm3] 2R_22470575_SNP [dm6]	A	C	6.552e^-5	0.71	INTRON CG10384	TF binding site mE1_TFBS_chinmo
X	559654	X_559654_SNP [dm3] X_665621_SNP [dm6]	T	A	6.621e^-5	0.71	INTERGENIC	transposable element FlyBase
X	457442	X_457442_SNP [dm3] X_563409_SNP [dm6]	G	C	6.661e^-5	0.71	INTRON Appl
2L	16201792	2L_16201792_SNP [dm3] 2L_16201792_SNP [dm6]	G	C	6.680e^-5	0.71	INTERGENIC	TF binding site mE1_TFBS_inv
X	19760780	X_19760780_SNP [dm3] X_19866747_SNP [dm6]	G	A	6.713e^-5	0.71	INTRON Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	20538717	2L_20538717_SNP [dm3] 2L_20538717_SNP [dm6]	T	C	6.734e^-5	0.71	DOWNSTREAM CR45707 INTERGENIC
2R	17837878	2R_17837878_SNP [dm3] 2R_21950373_SNP [dm6]	G	C	6.750e^-5	0.71	INTERGENIC
2L	15389918	2L_15389918_SNP [dm3] 2L_15389918_SNP [dm6]	T	A	6.801e^-5	0.71	INTERGENIC
3L	10839528	3L_10839528_DEL [dm3] 3L_10846428_DEL [dm6]	AAATTTT	A	6.874e^-5	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
X	466659	X_466659_SNP [dm3] X_572626_SNP [dm6]	C	T	6.957e^-5	0.71	INTRON Appl
2L	5725535	2L_5725535_SNP [dm3] 2L_5725535_SNP [dm6]	G	A	6.981e^-5	0.71	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11267829	3L_11267829_SNP [dm3] 3L_11274729_SNP [dm6]	T	A	6.986e^-5	0.71	UPSTREAM CR44720 INTERGENIC
2R	17471763	2R_17471763_SNP [dm3] 2R_21584258_SNP [dm6]	A	G	7.108e^-5	0.71	NON_SYNONYMOUS_CODING CG30222 SPLICE_SITE_REGION CG30222
3R	22882498	3R_22882498_SNP [dm3] 3R_27056776_SNP [dm6]	G	A	7.144e^-5	0.71	SPLICE_SITE_REGION RYa-R INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	17155643	2L_17155643_SNP [dm3] 2L_17155643_SNP [dm6]	A	G	7.188e^-5	0.71	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15468729	2L_15468729_SNP [dm3] 2L_15468729_SNP [dm6]	A	T	7.244e^-5	0.71	DOWNSTREAM CR45353 INTERGENIC
3R	21520392	3R_21520392_SNP [dm3] 3R_25694670_SNP [dm6]	G	A	7.250e^-5	0.71	INTERGENIC
3L	10839562	3L_10839562_SNP [dm3] 3L_10846462_SNP [dm6]	G	A	7.311e^-5	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	19227241	3L_19227241_SNP [dm3] 3L_19234141_SNP [dm6]	G	C	7.482e^-5	0.71	INTRON fz2
3R	12951951	3R_12951951_SNP [dm3] 3R_17126229_SNP [dm6]	A	C	7.499e^-5	0.71	SYNONYMOUS_CODING CG17477 UPSTREAM cher & 1 other DOWNSTREAM CR44238	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8569297	3R_8569297_SNP [dm3] 3R_12743575_SNP [dm6]	C	T	7.508e^-5	0.71	SYNONYMOUS_CODING CG5999
3L	10809181	3L_10809181_SNP [dm3] 3L_10816081_SNP [dm6]	T	A	7.515e^-5	0.71	UTR_3_PRIME CG42831 UPSTREAM CR45247
2L	6819684	2L_6819684_SNP [dm3] 2L_6819684_SNP [dm6]	T	C	7.520e^-5	0.71	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
3L	4509894	3L_4509894_SNP [dm3] 3L_4509894_SNP [dm6]	T	G	7.520e^-5	0.71	DOWNSTREAM Tie INTERGENIC
2L	5820355	2L_5820355_SNP [dm3] 2L_5820355_SNP [dm6]	C	A	7.522e^-5	0.71	INTERGENIC
3R	9631414	3R_9631414_SNP [dm3] 3R_13805692_SNP [dm6]	G	T	7.535e^-5	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24970761	3R_24970761_SNP [dm3] 3R_29145039_SNP [dm6]	T	C	7.571e^-5	0.71	SYNONYMOUS_CODING CG14516 DOWNSTREAM CG14511
3R	15096761	3R_15096761_SNP [dm3] 3R_19271039_SNP [dm6]	G	A	7.579e^-5	0.71	INTERGENIC
X	456999	X_456999_SNP [dm3] X_562966_SNP [dm6]	C	T	7.631e^-5	0.71	INTRON Appl
2L	9136300	2L_9136300_SNP [dm3] 2L_9136300_SNP [dm6]	A	T	7.669e^-5	0.71	INTRON CG32982
3L	10789232	3L_10789232_SNP [dm3] 3L_10796132_SNP [dm6]	T	C	7.690e^-5	0.71	DOWNSTREAM CR44546 INTERGENIC
3L	10789234	3L_10789234_SNP [dm3] 3L_10796134_SNP [dm6]	A	T	7.690e^-5	0.71	DOWNSTREAM CR44546 INTERGENIC
2R	16694131	2R_16694131_SNP [dm3] 2R_20806626_SNP [dm6]	G	T	7.811e^-5	0.71	INTERGENIC
2L	16201790	2L_16201790_SNP [dm3] 2L_16201790_SNP [dm6]	G	A	7.812e^-5	0.71	INTERGENIC	TF binding site mE1_TFBS_inv
X	5504700	X_5504700_SNP [dm3] X_5610667_SNP [dm6]	A	G	7.838e^-5	0.71	INTRON Vsx1	TF binding site mE1_TFBS_cad
2L	12129823	2L_12129823_INS [dm3] 2L_12129823_INS [dm6]	T	TTAATTAAGCC...	7.843e^-5	0.71	UTR_3_PRIME CG17211 DOWNSTREAM rho-6
2R	12012469	2R_12012469_SNP [dm3] 2R_16124964_SNP [dm6]	C	T	7.904e^-5	0.71	UPSTREAM spin DOWNSTREAM CG30095 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	5457023	2L_5457023_SNP [dm3] 2L_5457023_SNP [dm6]	G	A	7.968e^-5	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4164813	3L_4164813_INS [dm3] 3L_4164813_INS [dm6]	A	AGTTGA	7.987e^-5	0.71	INTRON mas	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8569377	3R_8569377_SNP [dm3] 3R_12743655_SNP [dm6]	A	T	8.029e^-5	0.71	NON_SYNONYMOUS_CODING CG5999
3R	12954933	3R_12954933_SNP [dm3] 3R_17129211_SNP [dm6]	G	T	8.030e^-5	0.71	DOWNSTREAM CG17475 & 1 other INTERGENIC
2R	12381221	2R_12381221_SNP [dm3] 2R_16493716_SNP [dm6]	C	T	8.045e^-5	0.71	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12381260	2R_12381260_SNP [dm3] 2R_16493755_SNP [dm6]	C	A	8.132e^-5	0.71	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10789226	3L_10789226_DEL [dm3] 3L_10796126_DEL [dm6]	ATAA	C	8.217e^-5	0.71	DOWNSTREAM CR44546 INTERGENIC
3R	8568018	3R_8568018_SNP [dm3] 3R_12742296_SNP [dm6]	C	T	8.244e^-5	0.71	NON_SYNONYMOUS_CODING CG5999 DOWNSTREAM CG5724
X	13199667	X_13199667_SNP [dm3] X_13305634_SNP [dm6]	G	A	8.264e^-5	0.71	UTR_5_PRIME IP3K2 INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_cad
3L	8598258	3L_8598258_SNP [dm3] 3L_8605158_SNP [dm6]	T	G	8.319e^-5	0.71	INTRON CG6282	TF binding site BDTNP1_TFBS_dl
3R	15023613	3R_15023613_SNP [dm3] 3R_19197891_SNP [dm6]	A	G	8.329e^-5	0.71	INTRON CG31475
3L	1669522	3L_1669522_SNP [dm3] 3L_1669522_SNP [dm6]	T	A	8.409e^-5	0.71	UPSTREAM RpL23A DOWNSTREAM CG13930 INTRON RabX5	TF binding site mE1_TFBS_chinmo
2R	7911966	2R_7911966_SNP [dm3] 2R_12024461_SNP [dm6]	T	G	8.448e^-5	0.71	SYNONYMOUS_CODING CG8964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4428385	3L_4428385_SNP [dm3] 3L_4428385_SNP [dm6]	A	T	8.473e^-5	0.71	UPSTREAM nAChRbeta1 INTERGENIC
X	18927709	X_18927709_SNP [dm3] X_19033676_SNP [dm6]	A	C	8.491e^-5	0.71	INTERGENIC
3R	9033819	3R_9033819_SNP [dm3] 3R_13208097_SNP [dm6]	T	A	8.507e^-5	0.71	DOWNSTREAM CG8483 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	3874761	3L_3874761_SNP [dm3] 3L_3874761_SNP [dm6]	A	C	8.512e^-5	0.71	INTERGENIC
2L	10796559	2L_10796559_SNP [dm3] 2L_10796559_SNP [dm6]	G	A	8.514e^-5	0.71	INTRON CG31869
3L	2135445	3L_2135445_SNP [dm3] 3L_2135445_SNP [dm6]	C	T	8.623e^-5	0.715	SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_chinmo
3L	8598281	3L_8598281_SNP [dm3] 3L_8605181_SNP [dm6]	T	C	8.724e^-5	0.719	INTRON CG6282	TF binding site BDTNP1_TFBS_dl
X	15586656	X_15586656_SNP [dm3] X_15692623_SNP [dm6]	T	G	8.806e^-5	0.719	DOWNSTREAM CR45524 & 1 other INTERGENIC
X	6536621	X_6536621_SNP [dm3] X_6642588_SNP [dm6]	C	T	8.826e^-5	0.719	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10836872	3L_10836872_SNP [dm3] 3L_10843772_SNP [dm6]	G	T	8.905e^-5	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	10839483	3L_10839483_SNP [dm3] 3L_10846383_SNP [dm6]	A	G	8.969e^-5	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
2L	3692064	2L_3692064_SNP [dm3] 2L_3692064_SNP [dm6]	G	T	9.012e^-5	0.719	UTR_3_PRIME CG34340 DOWNSTREAM CG16704 & 2 others
3L	10839511	3L_10839511_SNP [dm3] 3L_10846411_SNP [dm6]	A	T	9.051e^-5	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
2L	3266075	2L_3266075_SNP [dm3] 2L_3266075_SNP [dm6]	A	C	9.101e^-5	0.719	UPSTREAM CR45706 INTERGENIC
3L	10789224	3L_10789224_SNP [dm3] 3L_10796124_SNP [dm6]	T	C	9.110e^-5	0.719	DOWNSTREAM CR44546 INTERGENIC
3L	461884	3L_461884_SNP [dm3] 3L_461884_SNP [dm6]	T	C	9.160e^-5	0.719	INTRON klar
X	465846	X_465846_SNP [dm3] X_571813_SNP [dm6]	G	A	9.192e^-5	0.719	NON_SYNONYMOUS_CODING Appl
2L	18735110	2L_18735110_SNP [dm3] 2L_18735110_SNP [dm6]	A	T	9.251e^-5	0.719	UPSTREAM CR44769 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	16443258	X_16443258_SNP [dm3] X_16549225_SNP [dm6]	T	A	9.278e^-5	0.719	UTR_3_PRIME Arp2
3L	10789235	3L_10789235_SNP [dm3] 3L_10796135_SNP [dm6]	T	G	9.278e^-5	0.719	DOWNSTREAM CR44546 INTERGENIC
3L	10839624	3L_10839624_SNP [dm3] 3L_10846524_SNP [dm6]	A	T	9.281e^-5	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	2114747	2R_2114747_SNP [dm3] 2R_6227242_SNP [dm6]	A	G	9.370e^-5	0.719	DOWNSTREAM tomboy40 INTRON bin3
3R	19479621	3R_19479621_SNP [dm3] 3R_23653899_SNP [dm6]	T	A	9.394e^-5	0.719	INTRON CG31145
3L	10839537	3L_10839537_DEL [dm3] 3L_10846437_DEL [dm6]	AAGAATTCTT	A	9.397e^-5	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	16239804	2L_16239804_SNP [dm3] 2L_16239804_SNP [dm6]	C	T	9.402e^-5	0.719	INTRON CG42817
3L	10838588	3L_10838588_SNP [dm3] 3L_10845488_SNP [dm6]	G	A	9.429e^-5	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	453943	X_453943_SNP [dm3] X_559910_SNP [dm6]	T	C	9.612e^-5	0.72	INTRON Appl
X	453336	X_453336_SNP [dm3] X_559303_SNP [dm6]	C	A	9.634e^-5	0.72	INTRON Appl
2R	18361385	2R_18361385_SNP [dm3] 2R_22473880_SNP [dm6]	G	A	9.683e^-5	0.72	DOWNSTREAM CG10384 INTRON CG45062	TF binding site mE1_TFBS_cad
3L	10839617	3L_10839617_SNP [dm3] 3L_10846517_SNP [dm6]	T	C	9.829e^-5	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	11951455	3L_11951455_SNP [dm3] 3L_11958355_SNP [dm6]	A	C	9.890e^-5	0.72	UTR_5_PRIME CG43294 UPSTREAM CG11570 DOWNSTREAM prc INTRON CG43294
2R	12012489	2R_12012489_SNP [dm3] 2R_16124984_SNP [dm6]	A	T	9.908e^-5	0.72	UTR_5_PRIME spin DOWNSTREAM CG30095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	561268	X_561268_SNP [dm3] X_667235_SNP [dm6]	T	A	1.005e^-4	0.72	INTERGENIC
3L	12299971	3L_12299971_SNP [dm3] 3L_12306871_SNP [dm6]	G	T	1.014e^-4	0.72	INTERGENIC
2L	8423874	2L_8423874_SNP [dm3] 2L_8423874_SNP [dm6]	T	C	1.015e^-4	0.72	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
X	485245	X_485245_SNP [dm3] X_591212_SNP [dm6]	C	T	1.020e^-4	0.72	UTR_5_PRIME vnd INTRON vnd & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9923347	X_9923347_SNP [dm3] X_10029314_SNP [dm6]	A	T	1.021e^-4	0.72	INTRON Cht6
X	8151951	X_8151951_SNP [dm3] X_8257918_SNP [dm6]	C	T	1.028e^-4	0.72	INTRON CG1632
X	1628940	X_1628940_SNP [dm3] X_1734907_SNP [dm6]	T	C	1.038e^-4	0.72	INTERGENIC
X	1628942	X_1628942_DEL [dm3] X_1734909_DEL [dm6]	TACGGCATAT	T	1.038e^-4	0.72	INTERGENIC
X	10851648	X_10851648_DEL [dm3] X_10957615_DEL [dm6]	TT	T	1.040e^-4	0.72	INTRON Myo10A
2L	6709452	2L_6709452_SNP [dm3] 2L_6709452_SNP [dm6]	C	T	1.041e^-4	0.72	UPSTREAM Tsp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13998127	2R_13998127_DEL [dm3] 2R_18110622_DEL [dm6]	CATCCACC	C	1.046e^-4	0.72	DOWNSTREAM CG34196 INTERGENIC
3L	10806275	3L_10806275_SNP [dm3] 3L_10813175_SNP [dm6]	C	A	1.049e^-4	0.72	INTERGENIC
2L	18722005	2L_18722005_SNP [dm3] 2L_18722005_SNP [dm6]	T	G	1.056e^-4	0.72	INTRON CG10348
3L	4160302	3L_4160302_SNP [dm3] 3L_4160302_SNP [dm6]	A	G	1.059e^-4	0.72	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3L	10837175	3L_10837175_SNP [dm3] 3L_10844075_SNP [dm6]	G	A	1.064e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	19233556	3L_19233556_SNP [dm3] 3L_19240456_SNP [dm6]	C	T	1.068e^-4	0.72	UPSTREAM CR43892 INTERGENIC
X	19038564	X_19038564_SNP [dm3] X_19144531_SNP [dm6]	G	A	1.073e^-4	0.72	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_sna
2L	20573159	2L_20573159_SNP [dm3] 2L_20573159_SNP [dm6]	A	G	1.077e^-4	0.72	INTRON CR45347
3L	6296857	3L_6296857_SNP [dm3] 3L_6303757_SNP [dm6]	C	A	1.078e^-4	0.72	UPSTREAM CR45420 INTERGENIC
X	3319187	X_3319187_DEL [dm3] X_3425154_DEL [dm6]	ATGAGATG	A	1.081e^-4	0.72	INTRON CR44999 & 1 other
2L	20552605	2L_20552605_SNP [dm3] 2L_20552605_SNP [dm6]	C	A	1.083e^-4	0.72	INTERGENIC
3R	9710235	3R_9710235_SNP [dm3] 3R_13884513_SNP [dm6]	C	T	1.085e^-4	0.72	INTERGENIC
2L	6819595	2L_6819595_SNP [dm3] 2L_6819595_SNP [dm6]	C	T	1.087e^-4	0.72	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
3L	8598531	3L_8598531_SNP [dm3] 3L_8605431_SNP [dm6]	C	G	1.089e^-4	0.72	INTRON CG6282
2R	13032368	2R_13032368_SNP [dm3] 2R_17144863_SNP [dm6]	G	T	1.093e^-4	0.72	UPSTREAM tRNA:CR30234 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4719429	2L_4719429_SNP [dm3] 2L_4719429_SNP [dm6]	C	A	1.093e^-4	0.72	INTRON CG34351
2L	3959524	2L_3959524_SNP [dm3] 2L_3959524_SNP [dm6]	A	G	1.095e^-4	0.72	INTRON fred
3L	4648315	3L_4648315_SNP [dm3] 3L_4648315_SNP [dm6]	T	C	1.099e^-4	0.72	UTR_5_PRIME CG32238 INTRON axo	TF binding site BDTNP1_TFBS_prd
3R	22549408	3R_22549408_SNP [dm3] 3R_26723686_SNP [dm6]	G	T	1.105e^-4	0.72	INTRON CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	19310889	3L_19310889_SNP [dm3] 3L_19317789_SNP [dm6]	C	A	1.106e^-4	0.72	INTRON pip
3R	14655437	3R_14655437_INS [dm3] 3R_18829715_INS [dm6]	T	TTT	1.108e^-4	0.72	INTRON CG18208
2L	11857496	2L_11857496_SNP [dm3] 2L_11857496_SNP [dm6]	A	T	1.111e^-4	0.72	INTRON Pde1c
X	18768901	X_18768901_SNP [dm3] X_18874868_SNP [dm6]	C	A	1.112e^-4	0.72	SYNONYMOUS_CODING CG34401	TF binding site mE1_TFBS_cad
3L	7904000	3L_7904000_SNP [dm3] 3L_7910900_SNP [dm6]	T	A	1.121e^-4	0.72	INTRON pbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	15267671	X_15267671_SNP [dm3] X_15373638_SNP [dm6]	G	C	1.128e^-4	0.72	INTRON acj6
2L	2086367	2L_2086367_SNP [dm3] 2L_2086367_SNP [dm6]	G	C	1.129e^-4	0.72	INTRON dpr3
2L	12698977	2L_12698977_SNP [dm3] 2L_12698977_SNP [dm6]	C	G	1.130e^-4	0.72	UTR_3_PRIME CG17036 DOWNSTREAM CG17036 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	442475	3L_442475_SNP [dm3] 3L_442475_SNP [dm6]	C	A	1.133e^-4	0.72	DOWNSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
X	454211	X_454211_SNP [dm3] X_560178_SNP [dm6]	T	G	1.134e^-4	0.72	INTRON Appl
2L	9204530	2L_9204530_SNP [dm3] 2L_9204530_SNP [dm6]	A	G	1.135e^-4	0.72	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	1600904	2R_1600904_SNP [dm3] 2R_5713399_SNP [dm6]	T	C	1.135e^-4	0.72	INTRON ap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19943171	3R_19943171_SNP [dm3] 3R_24117449_SNP [dm6]	C	T	1.136e^-4	0.72	INTRON Rootletin
X	467529	X_467529_SNP [dm3] X_573496_SNP [dm6]	C	A	1.137e^-4	0.72	INTRON Appl
3R	7875673	3R_7875673_SNP [dm3] 3R_12049951_SNP [dm6]	T	C	1.138e^-4	0.72	UPSTREAM CG14739 INTERGENIC
3L	15132002	3L_15132002_SNP [dm3] 3L_15138902_SNP [dm6]	G	A	1.143e^-4	0.72	SYNONYMOUS_CODING Pdi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5473508	X_5473508_INS [dm3] X_5579475_INS [dm6]	T	TT	1.144e^-4	0.72	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14518373	3R_14518373_SNP [dm3] 3R_18692651_SNP [dm6]	C	T	1.154e^-4	0.72	SYNONYMOUS_CODING Muc91C DOWNSTREAM CG14300
3L	3199069	3L_3199069_SNP [dm3] 3L_3199069_SNP [dm6]	T	C	1.159e^-4	0.72	UPSTREAM gry & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	3330412	2L_3330412_SNP [dm3] 2L_3330412_SNP [dm6]	C	A	1.167e^-4	0.72	UPSTREAM CG3285 DOWNSTREAM CG33282 INTERGENIC
3R	7872354	3R_7872354_SNP [dm3] 3R_12046632_SNP [dm6]	G	A	1.171e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	13283327	X_13283327_SNP [dm3] X_13389294_SNP [dm6]	T	A	1.176e^-4	0.72	UTR_3_PRIME CG1662 DOWNSTREAM CG1662 & 1 other
X	20603531	X_20603531_SNP [dm3] X_20732504_SNP [dm6]	T	C	1.177e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	4159537	3L_4159537_SNP [dm3] 3L_4159537_SNP [dm6]	G	A	1.181e^-4	0.72	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	8598906	3L_8598906_SNP [dm3] 3L_8605806_SNP [dm6]	C	G	1.186e^-4	0.72	INTRON CG6282
2R	10578511	2R_10578511_SNP [dm3] 2R_14691006_SNP [dm6]	A	T	1.186e^-4	0.72	INTRON mspo
3R	15666091	3R_15666091_DEL [dm3] 3R_19840369_DEL [dm6]	CGGATCGGTTC...	C	1.193e^-4	0.72	UPSTREAM CG31459 INTERGENIC
3R	25313432	3R_25313432_SNP [dm3] 3R_29487710_SNP [dm6]	G	C	1.195e^-4	0.72	NON_SYNONYMOUS_CODING CG2321 DOWNSTREAM Ptp99A	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	19464755	3R_19464755_SNP [dm3] 3R_23639033_SNP [dm6]	A	G	1.196e^-4	0.72	INTRON CG31145	TF binding site mE1_TFBS_inv
2L	9132757	2L_9132757_SNP [dm3] 2L_9132757_SNP [dm6]	A	C	1.199e^-4	0.72	INTRON CG32982
3R	12954996	3R_12954996_SNP [dm3] 3R_17129274_SNP [dm6]	C	A	1.203e^-4	0.72	DOWNSTREAM CG17475 & 1 other INTERGENIC
X	3440934	X_3440934_SNP [dm3] X_3546901_SNP [dm6]	C	T	1.208e^-4	0.72	UPSTREAM CR34335 INTRON CG32791	TF binding site mE1_TFBS_Trl
3L	1876808	3L_1876808_SNP [dm3] 3L_1876808_SNP [dm6]	G	A	1.210e^-4	0.72	UPSTREAM dre4 INTRON CG13937	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10839731	3L_10839731_SNP [dm3] 3L_10846631_SNP [dm6]	T	C	1.212e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	19547132	3R_19547132_SNP [dm3] 3R_23721410_SNP [dm6]	A	G	1.221e^-4	0.72	SYNONYMOUS_CODING CG10232	TF binding site mE1_TFBS_HSA
3L	4510234	3L_4510234_SNP [dm3] 3L_4510234_SNP [dm6]	C	T	1.221e^-4	0.72	DOWNSTREAM Tie INTERGENIC
3R	7110760	3R_7110760_SNP [dm3] 3R_11285038_SNP [dm6]	G	A	1.221e^-4	0.72	INTRON CR31386	TF binding site mE1_TFBS_inv
3L	10808829	3L_10808829_SNP [dm3] 3L_10815729_SNP [dm6]	A	G	1.225e^-4	0.72	UTR_3_PRIME CG42831 UPSTREAM CR45247
3R	16575017	3R_16575017_SNP [dm3] 3R_20749295_SNP [dm6]	T	C	1.233e^-4	0.72	SYNONYMOUS_CODING CG42322 UPSTREAM Prosalpha4T1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12844717	3L_12844717_SNP [dm3] 3L_12851617_SNP [dm6]	G	A	1.240e^-4	0.72	NON_SYNONYMOUS_CODING Wbp2 INTRON Wbp2
2R	10124383	2R_10124383_SNP [dm3] 2R_14236878_SNP [dm6]	T	G	1.242e^-4	0.72	SYNONYMOUS_CODING CG8485	TF binding site mE1_TFBS_chinmo
X	13283507	X_13283507_SNP [dm3] X_13389474_SNP [dm6]	G	C	1.247e^-4	0.72	DOWNSTREAM CG1662 & 1 other INTERGENIC
X	456756	X_456756_SNP [dm3] X_562723_SNP [dm6]	T	C	1.249e^-4	0.72	INTRON Appl
3R	26069602	3R_26069602_SNP [dm3] 3R_30243880_SNP [dm6]	T	C	1.249e^-4	0.72	UPSTREAM CG9737 DOWNSTREAM CG9733 INTERGENIC
X	6252915	X_6252915_SNP [dm3] X_6358882_SNP [dm6]	C	A	1.255e^-4	0.72	INTRON kdn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	6334482	X_6334482_DEL [dm3] X_6440449_DEL [dm6]	TTCT	T	1.259e^-4	0.72	INTRON CG42340
2L	8405574	2L_8405574_SNP [dm3] 2L_8405574_SNP [dm6]	C	T	1.259e^-4	0.72	SYNONYMOUS_CODING emb	TF binding site mE1_TFBS_sens
X	16552396	X_16552396_SNP [dm3] X_16658363_SNP [dm6]	G	T	1.279e^-4	0.724	SYNONYMOUS_CODING r	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9204585	2L_9204585_SNP [dm3] 2L_9204585_SNP [dm6]	G	A	1.283e^-4	0.724	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7903840	3L_7903840_SNP [dm3] 3L_7910740_SNP [dm6]	A	G	1.284e^-4	0.724	INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10836895	3L_10836895_SNP [dm3] 3L_10843795_SNP [dm6]	A	G	1.285e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	457486	X_457486_SNP [dm3] X_563453_SNP [dm6]	T	C	1.295e^-4	0.724	INTRON Appl
3L	10839550	3L_10839550_DEL [dm3] 3L_10846450_DEL [dm6]	TCC	T	1.310e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	10839554	3L_10839554_DEL [dm3] 3L_10846454_DEL [dm6]	ACT	A	1.310e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	13390597	2R_13390597_DEL [dm3] 2R_17503092_DEL [dm6]	AA	A	1.315e^-4	0.724	INTRON CG43164	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15222226	3R_15222226_SNP [dm3] 3R_19396504_SNP [dm6]	A	T	1.321e^-4	0.724	DOWNSTREAM CG31244 INTRON Ino80
3L	11355351	3L_11355351_SNP [dm3] 3L_11362251_SNP [dm6]	A	T	1.330e^-4	0.724	UTR_3_PRIME CG6163 DOWNSTREAM CG6163
X	14102107	X_14102107_SNP [dm3] X_14208074_SNP [dm6]	G	A	1.330e^-4	0.724	INTRON l_1_G0007 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	16484000	2R_16484000_SNP [dm3] 2R_20596495_SNP [dm6]	T	C	1.331e^-4	0.724	INTRON bl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	6819596	2L_6819596_SNP [dm3] 2L_6819596_SNP [dm6]	A	T	1.333e^-4	0.724	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
3R	24970868	3R_24970868_SNP [dm3] 3R_29145146_SNP [dm6]	C	G	1.335e^-4	0.724	NON_SYNONYMOUS_CODING CG14516 DOWNSTREAM CG14511
3L	14723391	3L_14723391_SNP [dm3] 3L_14730291_SNP [dm6]	A	G	1.344e^-4	0.724	DOWNSTREAM CG13473 INTRON ome
2L	6973732	2L_6973732_SNP [dm3] 2L_6973732_SNP [dm6]	A	T	1.346e^-4	0.724	DOWNSTREAM CR43142 INTRON uif	TF binding site mE1_TFBS_chinmo
2R	12012426	2R_12012426_SNP [dm3] 2R_16124921_SNP [dm6]	T	A	1.347e^-4	0.724	UPSTREAM spin DOWNSTREAM CG30095 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4102930	3L_4102930_SNP [dm3] 3L_4102930_SNP [dm6]	A	G	1.361e^-4	0.724	UTR_5_PRIME CG14995 UPSTREAM CG14995 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	17908721	2R_17908721_SNP [dm3] 2R_22021216_SNP [dm6]	T	A	1.363e^-4	0.724	INTRON CG34370
3R	17683958	3R_17683958_SNP [dm3] 3R_21858236_SNP [dm6]	A	T	1.368e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5523103	X_5523103_SNP [dm3] X_5629070_SNP [dm6]	C	T	1.368e^-4	0.724	INTRON CG42492
3L	10836974	3L_10836974_SNP [dm3] 3L_10843874_SNP [dm6]	A	T	1.369e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	9836703	3R_9836703_SNP [dm3] 3R_14010981_SNP [dm6]	T	C	1.371e^-4	0.724	INTRON rdx	TF binding site mE1_TFBS_cnc
3R	22882264	3R_22882264_SNP [dm3] 3R_27056542_SNP [dm6]	T	C	1.372e^-4	0.724	INTRON RYa-R	TF binding site mE1_TFBS_inv
3L	1090689	3L_1090689_SNP [dm3] 3L_1090689_SNP [dm6]	C	A	1.378e^-4	0.724	INTRON bab1	regulatory region REDfly_CRMs
2L	6941420	2L_6941420_SNP [dm3] 2L_6941420_SNP [dm6]	A	C	1.378e^-4	0.724	INTRON CG18304	TF binding site BDTNP1_TFBS_dl
3R	25864472	3R_25864472_SNP [dm3] 3R_30038750_SNP [dm6]	C	T	1.383e^-4	0.724	UTR_3_PRIME janA UPSTREAM Sry-beta & 1 other	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	17911017	3L_17911017_SNP [dm3] 3L_17917917_SNP [dm6]	C	T	1.387e^-4	0.724	INTERGENIC
2L	15756472	2L_15756472_SNP [dm3] 2L_15756472_SNP [dm6]	C	A	1.396e^-4	0.724	UTR_3_PRIME Gli DOWNSTREAM l_2_35Df
3L	8587731	3L_8587731_SNP [dm3] 3L_8594631_SNP [dm6]	T	C	1.397e^-4	0.724	SYNONYMOUS_CODING CG43078 UTR_3_PRIME CG43078
X	534370	X_534370_SNP [dm3] X_640337_SNP [dm6]	T	C	1.397e^-4	0.724	SYNONYMOUS_CODING su_s_	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15283548	2R_15283548_SNP [dm3] 2R_19396043_SNP [dm6]	G	A	1.400e^-4	0.724	UPSTREAM SdhA DOWNSTREAM cer & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	15122782	3L_15122782_SNP [dm3] 3L_15129682_SNP [dm6]	C	T	1.400e^-4	0.724	NON_SYNONYMOUS_CODING CG13457
3L	11248554	3L_11248554_SNP [dm3] 3L_11255454_SNP [dm6]	C	A	1.404e^-4	0.724	UTR_3_PRIME scyl DOWNSTREAM scyl	TF binding site BDTNP1_TFBS_dl
3L	8581926	3L_8581926_INS [dm3] 3L_8588826_INS [dm6]	G	GGAGGAGG	1.421e^-4	0.724	INTRON CG43078	TF binding site mE1_TFBS_chinmo
X	539807	X_539807_SNP [dm3] X_645774_SNP [dm6]	G	T	1.421e^-4	0.724	NON_SYNONYMOUS_CODING CG13367	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3994993	3L_3994993_SNP [dm3] 3L_3994993_SNP [dm6]	C	T	1.424e^-4	0.724	DOWNSTREAM scrt INTERGENIC
2L	4346572	2L_4346572_SNP [dm3] 2L_4346572_SNP [dm6]	A	G	1.428e^-4	0.724	UPSTREAM CR44697 DOWNSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	9204526	2L_9204526_SNP [dm3] 2L_9204526_SNP [dm6]	C	T	1.429e^-4	0.724	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5862454	2L_5862454_SNP [dm3] 2L_5862454_SNP [dm6]	T	C	1.433e^-4	0.724	INTRON rau
3L	4102950	3L_4102950_DEL [dm3] 3L_4102950_DEL [dm6]	TT	T	1.434e^-4	0.724	UTR_5_PRIME CG14995 UPSTREAM CG14995 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	5862455	2L_5862455_SNP [dm3] 2L_5862455_SNP [dm6]	C	T	1.437e^-4	0.724	INTRON rau
3L	4160680	3L_4160680_SNP [dm3] 3L_4160680_SNP [dm6]	G	A	1.437e^-4	0.724	UTR_5_PRIME nab DOWNSTREAM mas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	5561662	2L_5561662_SNP [dm3] 2L_5561662_SNP [dm6]	G	A	1.441e^-4	0.724	INTRON GluRIIB
2L	7170543	2L_7170543_SNP [dm3] 2L_7170543_SNP [dm6]	T	G	1.446e^-4	0.724	INTERGENIC
3R	14509926	3R_14509926_SNP [dm3] 3R_18684204_SNP [dm6]	G	C	1.452e^-4	0.724	INTRON CG7708	TF binding site mE1_TFBS_cad
2R	4789672	2R_4789672_SNP [dm3] 2R_8902167_SNP [dm6]	T	A	1.458e^-4	0.724	UTR_5_PRIME Ggamma1 UPSTREAM MrgBP INTRON Ggamma1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	12134004	2L_12134004_SNP [dm3] 2L_12134004_SNP [dm6]	C	A	1.462e^-4	0.724	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	11857561	2L_11857561_SNP [dm3] 2L_11857561_SNP [dm6]	A	T	1.465e^-4	0.724	INTRON Pde1c
3L	10206432	3L_10206432_SNP [dm3] 3L_10213332_SNP [dm6]	T	C	1.468e^-4	0.724	INTERGENIC
X	8812064	X_8812064_SNP [dm3] X_8918031_SNP [dm6]	G	A	1.470e^-4	0.724	INTRON rdgA
2L	22164904	2L_22164904_SNP [dm3] 2L_22164904_SNP [dm6]	G	A	1.475e^-4	0.724	UTR_3_PRIME CG42748 DOWNSTREAM Clamp & 1 other
3R	10192570	3R_10192570_DEL [dm3] 3R_14366848_DEL [dm6]	ATTTTACATA	A	1.475e^-4	0.724	INTRON NK7.1
X	21011603	X_21011603_SNP [dm3] X_21140576_SNP [dm6]	T	A	1.494e^-4	0.724	UTR_3_PRIME CG34120 DOWNSTREAM CG34120
2L	6819654	2L_6819654_SNP [dm3] 2L_6819654_SNP [dm6]	C	A	1.495e^-4	0.724	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
3L	10840187	3L_10840187_SNP [dm3] 3L_10847087_SNP [dm6]	C	T	1.499e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	17911038	3L_17911038_SNP [dm3] 3L_17917938_SNP [dm6]	A	C	1.503e^-4	0.724	INTERGENIC
2L	6934963	2L_6934963_SNP [dm3] 2L_6934963_SNP [dm6]	A	T	1.506e^-4	0.724	INTRON CG18304	TF binding site mE1_TFBS_cad
3L	4179844	3L_4179844_SNP [dm3] 3L_4179844_SNP [dm6]	G	A	1.507e^-4	0.724	DOWNSTREAM Teh2 INTRON CG18675 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	4667501	3L_4667501_SNP [dm3] 3L_4667501_SNP [dm6]	G	T	1.507e^-4	0.724	UPSTREAM CG32236 INTRON axo
2R	11502092	2R_11502092_SNP [dm3] 2R_15614587_SNP [dm6]	C	T	1.510e^-4	0.724	START_GAINED CG42524 UTR_5_PRIME CG42524	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15756441	2L_15756441_SNP [dm3] 2L_15756441_SNP [dm6]	C	G	1.514e^-4	0.724	UTR_3_PRIME Gli DOWNSTREAM l_2_35Df
3R	12951963	3R_12951963_SNP [dm3] 3R_17126241_SNP [dm6]	G	A	1.515e^-4	0.724	SYNONYMOUS_CODING CG17477 UPSTREAM cher & 1 other DOWNSTREAM CR44238	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7704650	2L_7704650_SNP [dm3] 2L_7704650_SNP [dm6]	C	A	1.516e^-4	0.724	INTRON Tep3
3R	15743651	3R_15743651_SNP [dm3] 3R_19917929_SNP [dm6]	T	C	1.517e^-4	0.724	UPSTREAM CG4770 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	9260695	2L_9260695_SNP [dm3] 2L_9260695_SNP [dm6]	G	C	1.528e^-4	0.726	INTRON Ggamma30A
3R	5637682	3R_5637682_SNP [dm3] 3R_9811960_SNP [dm6]	A	G	1.529e^-4	0.726	UPSTREAM CG8534 INTRON CR44035	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	3521221	3L_3521221_SNP [dm3] 3L_3521221_SNP [dm6]	C	G	1.538e^-4	0.727	INTRON Eip63E
2R	12381091	2R_12381091_SNP [dm3] 2R_16493586_SNP [dm6]	A	G	1.539e^-4	0.727	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	897931	X_897931_SNP [dm3] X_1003898_SNP [dm6]	G	A	1.546e^-4	0.727	INTERGENIC
2L	3328719	2L_3328719_SNP [dm3] 2L_3328719_SNP [dm6]	A	G	1.554e^-4	0.727	SYNONYMOUS_CODING CG33282
2R	12381003	2R_12381003_INS [dm3] 2R_16493498_INS [dm6]	G	CAAAA	1.555e^-4	0.727	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9190394	3L_9190394_SNP [dm3] 3L_9197294_SNP [dm6]	T	C	1.555e^-4	0.727	INTERGENIC
3R	9109435	3R_9109435_SNP [dm3] 3R_13283713_SNP [dm6]	G	A	1.569e^-4	0.73	SYNONYMOUS_CODING CG8630	TF binding site mE1_TFBS_cad
3L	10809113	3L_10809113_SNP [dm3] 3L_10816013_SNP [dm6]	A	C	1.570e^-4	0.73	UTR_3_PRIME CG42831 UPSTREAM CR45247
2L	5488820	2L_5488820_SNP [dm3] 2L_5488820_SNP [dm6]	T	A	1.573e^-4	0.73	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	10667023	2L_10667023_SNP [dm3] 2L_10667023_SNP [dm6]	A	C	1.580e^-4	0.731	INTRON CG31871
2L	12851041	2L_12851041_SNP [dm3] 2L_12851041_SNP [dm6]	T	A	1.586e^-4	0.732	INTERGENIC
2L	3435292	2L_3435292_SNP [dm3] 2L_3435292_SNP [dm6]	T	G	1.600e^-4	0.732	INTERGENIC
X	457483	X_457483_SNP [dm3] X_563450_SNP [dm6]	T	G	1.600e^-4	0.732	INTRON Appl
3L	1522125	3L_1522125_SNP [dm3] 3L_1522125_SNP [dm6]	G	T	1.604e^-4	0.732	SYNONYMOUS_CODING Psa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	24810375	3R_24810375_SNP [dm3] 3R_28984653_SNP [dm6]	G	A	1.605e^-4	0.732	INTERGENIC
3L	10789283	3L_10789283_SNP [dm3] 3L_10796183_SNP [dm6]	G	T	1.607e^-4	0.732	INTERGENIC
2L	5075335	2L_5075335_SNP [dm3] 2L_5075335_SNP [dm6]	T	A	1.609e^-4	0.732	INTRON pgant5
3L	10206274	3L_10206274_SNP [dm3] 3L_10213174_SNP [dm6]	T	G	1.613e^-4	0.732	INTERGENIC
2L	9229394	2L_9229394_SNP [dm3] 2L_9229394_SNP [dm6]	C	G	1.621e^-4	0.732	INTRON tai
3L	17910683	3L_17910683_SNP [dm3] 3L_17917583_SNP [dm6]	G	T	1.628e^-4	0.732	INTERGENIC
3L	5322799	3L_5322799_INS [dm3] 3L_5329699_INS [dm6]	A	AA	1.628e^-4	0.732	INTERGENIC
3R	22303534	3R_22303534_SNP [dm3] 3R_26477812_SNP [dm6]	A	T	1.640e^-4	0.732	SPLICE_SITE_REGION plum INTRON plum	TF binding site mE1_TFBS_inv
2L	9776217	2L_9776217_SNP [dm3] 2L_9776217_SNP [dm6]	C	T	1.644e^-4	0.732	INTERGENIC
3L	13722941	3L_13722941_SNP [dm3] 3L_13729841_SNP [dm6]	A	T	1.648e^-4	0.732	INTRON bru-3
3L	17910689	3L_17910689_SNP [dm3] 3L_17917589_SNP [dm6]	C	T	1.661e^-4	0.732	INTERGENIC
3R	21270457	3R_21270457_SNP [dm3] 3R_25444735_SNP [dm6]	T	G	1.661e^-4	0.732	INTRON Fur1
3L	10432389	3L_10432389_SNP [dm3] 3L_10439289_SNP [dm6]	A	G	1.664e^-4	0.732	INTERGENIC	transposable element FlyBase
2L	9130774	2L_9130774_SNP [dm3] 2L_9130774_SNP [dm6]	T	C	1.668e^-4	0.732	INTRON CG32982
2L	9136660	2L_9136660_SNP [dm3] 2L_9136660_SNP [dm6]	G	C	1.669e^-4	0.732	INTRON CG32982
3L	4158062	3L_4158062_SNP [dm3] 3L_4158062_SNP [dm6]	G	A	1.673e^-4	0.732	INTRON nab
3R	19345268	3R_19345268_SNP [dm3] 3R_23519546_SNP [dm6]	G	C	1.675e^-4	0.732	UPSTREAM Irk2 DOWNSTREAM CG10177 INTERGENIC
3L	10377538	3L_10377538_SNP [dm3] 3L_10384438_SNP [dm6]	C	T	1.675e^-4	0.732	INTERGENIC
3R	19358322	3R_19358322_DEL [dm3] 3R_23532600_DEL [dm6]	TTT	T	1.682e^-4	0.732	DOWNSTREAM CG10170 INTERGENIC
2L	11857541	2L_11857541_SNP [dm3] 2L_11857541_SNP [dm6]	G	A	1.683e^-4	0.732	INTRON Pde1c
3L	4775463	3L_4775463_SNP [dm3] 3L_4775463_SNP [dm6]	G	A	1.685e^-4	0.732	INTRON RhoGEF64C
2R	16998367	2R_16998367_SNP [dm3] 2R_21110862_SNP [dm6]	G	C	1.690e^-4	0.732	INTRON ktub
3L	17911039	3L_17911039_SNP [dm3] 3L_17917939_SNP [dm6]	T	C	1.692e^-4	0.732	INTERGENIC
2L	19474938	2L_19474938_SNP [dm3] 2L_19474938_SNP [dm6]	T	C	1.706e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16479762	2L_16479762_DEL [dm3] 2L_16479762_DEL [dm6]	ATTT	A	1.715e^-4	0.732	INTRON dac
3L	10206412	3L_10206412_INS [dm3] 3L_10213312_INS [dm6]	A	TAC	1.717e^-4	0.732	INTERGENIC
2L	12134011	2L_12134011_SNP [dm3] 2L_12134011_SNP [dm6]	G	T	1.726e^-4	0.732	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4103056	3L_4103056_INS [dm3] 3L_4103056_INS [dm6]	T	TAT	1.736e^-4	0.732	UPSTREAM CG14995 & 1 other INTRON CG14995	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4510949	3L_4510949_SNP [dm3] 3L_4510949_SNP [dm6]	A	G	1.748e^-4	0.732	UTR_3_PRIME Tie
3L	6102922	3L_6102922_SNP [dm3] 3L_6109822_SNP [dm6]	C	T	1.750e^-4	0.732	INTRON Ets65A
3R	7825512	3R_7825512_SNP [dm3] 3R_11999790_SNP [dm6]	C	A	1.752e^-4	0.732	INTRON Tk & 1 other
2R	16693049	2R_16693049_SNP [dm3] 2R_20805544_SNP [dm6]	T	C	1.754e^-4	0.732	INTERGENIC
3L	10204811	3L_10204811_SNP [dm3] 3L_10211711_SNP [dm6]	A	G	1.757e^-4	0.732	INTERGENIC
2L	19458506	2L_19458506_DEL [dm3] 2L_19458506_DEL [dm6]	CCTGCCCCCTCT...	C	1.764e^-4	0.732	DOWNSTREAM CG10026 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17362978	3R_17362978_SNP [dm3] 3R_21537256_SNP [dm6]	T	C	1.768e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cad
2L	5084561	2L_5084561_SNP [dm3] 2L_5084561_SNP [dm6]	C	T	1.774e^-4	0.732	INTRON pgant5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12001211	3L_12001211_SNP [dm3] 3L_12008111_SNP [dm6]	A	T	1.774e^-4	0.732	DOWNSTREAM rols & 1 other INTERGENIC
3R	17362975	3R_17362975_SNP [dm3] 3R_21537253_SNP [dm6]	C	T	1.781e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cad
X	2780046	X_2780046_SNP [dm3] X_2886013_SNP [dm6]	G	T	1.782e^-4	0.732	UPSTREAM CG14419 INTRON kirre
3R	16324118	3R_16324118_SNP [dm3] 3R_20498396_SNP [dm6]	T	C	1.786e^-4	0.732	INTERGENIC
2L	9076126	2L_9076126_SNP [dm3] 2L_9076126_SNP [dm6]	G	C	1.787e^-4	0.732	UPSTREAM CG12439 INTERGENIC
3R	15666318	3R_15666318_SNP [dm3] 3R_19840596_SNP [dm6]	C	T	1.798e^-4	0.732	UPSTREAM CG31459 INTERGENIC
3L	12299937	3L_12299937_SNP [dm3] 3L_12306837_SNP [dm6]	T	A	1.799e^-4	0.732	INTERGENIC
3L	8554272	3L_8554272_SNP [dm3] 3L_8561172_SNP [dm6]	A	T	1.800e^-4	0.732	INTRON rhea
2L	9130548	2L_9130548_SNP [dm3] 2L_9130548_SNP [dm6]	A	G	1.808e^-4	0.732	INTRON CG32982	TF binding site BDTNP1_TFBS_twi
3R	16582443	3R_16582443_SNP [dm3] 3R_20756721_SNP [dm6]	T	G	1.812e^-4	0.732	UPSTREAM Syp DOWNSTREAM CG42322 & 1 other INTERGENIC
3R	22549137	3R_22549137_SNP [dm3] 3R_26723415_SNP [dm6]	A	T	1.816e^-4	0.732	INTRON CG6420
2L	12851017	2L_12851017_SNP [dm3] 2L_12851017_SNP [dm6]	A	G	1.816e^-4	0.732	INTERGENIC
2L	12134009	2L_12134009_SNP [dm3] 2L_12134009_SNP [dm6]	T	A	1.826e^-4	0.732	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1761974	2L_1761974_SNP [dm3] 2L_1761974_SNP [dm6]	A	T	1.831e^-4	0.732	INTERGENIC
3L	13049767	3L_13049767_INS [dm3] 3L_13056667_INS [dm6]	A	AT	1.835e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13283536	X_13283536_SNP [dm3] X_13389503_SNP [dm6]	A	G	1.842e^-4	0.732	DOWNSTREAM CG1662 & 1 other INTERGENIC
3L	13910425	3L_13910425_SNP [dm3] 3L_13917325_SNP [dm6]	G	A	1.843e^-4	0.732	INTRON Rgl
3L	17911035	3L_17911035_SNP [dm3] 3L_17917935_SNP [dm6]	G	A	1.846e^-4	0.732	INTERGENIC
3R	4884976	3R_4884976_SNP [dm3] 3R_9059254_SNP [dm6]	C	T	1.852e^-4	0.732	SYNONYMOUS_CODING Kdm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2086368	2L_2086368_SNP [dm3] 2L_2086368_SNP [dm6]	C	T	1.852e^-4	0.732	INTRON dpr3
2L	22897207	2L_22897207_SNP [dm3] 2L_23004475_SNP [dm6]	G	A	1.854e^-4	0.732	SYNONYMOUS_CODING Cht3
X	525878	X_525878_SNP [dm3] X_631845_SNP [dm6]	C	G	1.857e^-4	0.732	SYNONYMOUS_CODING l_1_1Bi
3L	3200225	3L_3200225_SNP [dm3] 3L_3200225_SNP [dm6]	A	C	1.858e^-4	0.732	SPLICE_SITE_REGION gry INTRON gry	TF binding site mE1_TFBS_sens
3L	10801722	3L_10801722_SNP [dm3] 3L_10808622_SNP [dm6]	A	G	1.861e^-4	0.732	INTERGENIC
3R	9884686	3R_9884686_SNP [dm3] 3R_14058964_SNP [dm6]	G	A	1.863e^-4	0.732	INTRON foxo
X	540601	X_540601_SNP [dm3] X_646568_SNP [dm6]	T	C	1.868e^-4	0.732	UPSTREAM Roc1a DOWNSTREAM CG13367 INTERGENIC	transposable element FlyBase
2L	9961424	2L_9961424_SNP [dm3] 2L_9961424_SNP [dm6]	C	T	1.876e^-4	0.732	SYNONYMOUS_CODING CG5850 EXON CR43683	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16698885	2R_16698885_SNP [dm3] 2R_20811380_SNP [dm6]	G	T	1.880e^-4	0.732	INTERGENIC
3R	12701775	3R_12701775_SNP [dm3] 3R_16876053_SNP [dm6]	G	A	1.885e^-4	0.732	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10839582	3L_10839582_SNP [dm3] 3L_10846482_SNP [dm6]	G	A	1.885e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	25163603	3R_25163603_SNP [dm3] 3R_29337881_SNP [dm6]	A	G	1.888e^-4	0.732	INTERGENIC
3L	10839526	3L_10839526_SNP [dm3] 3L_10846426_SNP [dm6]	T	C	1.891e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
3L	13122502	3L_13122502_SNP [dm3] 3L_13129402_SNP [dm6]	C	T	1.898e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12299960	3L_12299960_SNP [dm3] 3L_12306860_SNP [dm6]	G	T	1.913e^-4	0.732	INTERGENIC
2L	22184609	2L_22184609_SNP [dm3] 2L_22184609_SNP [dm6]	G	T	1.914e^-4	0.732	DOWNSTREAM CG3635 INTERGENIC	transposable element FlyBase
2L	6330099	2L_6330099_SNP [dm3] 2L_6330099_SNP [dm6]	T	C	1.917e^-4	0.732	INTRON PDZ-GEF	TF binding site mE1_TFBS_cad
X	1989991	X_1989991_SNP [dm3] X_2095958_SNP [dm6]	C	T	1.926e^-4	0.732	INTRON csw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	4426812	3L_4426812_SNP [dm3] 3L_4426812_SNP [dm6]	A	T	1.930e^-4	0.732	DOWNSTREAM CG15020 INTERGENIC
2L	2086374	2L_2086374_SNP [dm3] 2L_2086374_SNP [dm6]	T	G	1.935e^-4	0.732	INTRON dpr3
X	17119687	X_17119687_SNP [dm3] X_17225654_SNP [dm6]	T	G	1.945e^-4	0.732	UTR_3_PRIME CG10598 DOWNSTREAM CG10598
2L	11857505	2L_11857505_SNP [dm3] 2L_11857505_SNP [dm6]	G	A	1.949e^-4	0.732	INTRON Pde1c
3L	1249505	3L_1249505_SNP [dm3] 3L_1249505_SNP [dm6]	G	A	1.950e^-4	0.732	SYNONYMOUS_CODING Sac1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	23185263	3R_23185263_INS [dm3] 3R_27359541_INS [dm6]	T	TCT	1.952e^-4	0.732	INTRON CG42534
X	17114009	X_17114009_SNP [dm3] X_17219976_SNP [dm6]	A	G	1.957e^-4	0.732	DOWNSTREAM CG12998 INTERGENIC
2L	6819650	2L_6819650_SNP [dm3] 2L_6819650_SNP [dm6]	T	C	1.962e^-4	0.732	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
3L	10835400	3L_10835400_SNP [dm3] 3L_10842300_SNP [dm6]	C	G	1.966e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	16731760	X_16731760_INS [dm3] X_16837727_INS [dm6]	C	CC	1.968e^-4	0.732	DOWNSTREAM RSG7 INTERGENIC
3L	5778228	3L_5778228_SNP [dm3] 3L_5785128_SNP [dm6]	T	C	1.970e^-4	0.732	DOWNSTREAM PGRP-LD & 1 other INTRON Cralbp
X	15267696	X_15267696_SNP [dm3] X_15373663_SNP [dm6]	A	G	1.977e^-4	0.732	INTRON acj6	TF binding site BDTNP1_TFBS_dl
3R	15096795	3R_15096795_SNP [dm3] 3R_19271073_SNP [dm6]	T	A	1.990e^-4	0.732	INTERGENIC
2L	11860484	2L_11860484_SNP [dm3] 2L_11860484_SNP [dm6]	G	A	1.993e^-4	0.732	INTRON Pde1c
X	13199689	X_13199689_SNP [dm3] X_13305656_SNP [dm6]	A	G	1.994e^-4	0.732	UTR_5_PRIME IP3K2 INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_cad
3R	22851531	3R_22851531_SNP [dm3] 3R_27025809_SNP [dm6]	G	A	1.997e^-4	0.732	SYNONYMOUS_CODING CG6271 INTRON RYa-R
3L	962630	3L_962630_SNP [dm3] 3L_962630_SNP [dm6]	A	T	1.998e^-4	0.732	INTRON Glut1
2L	9954389	2L_9954389_SNP [dm3] 2L_9954389_SNP [dm6]	G	A	2.001e^-4	0.732	UTR_5_PRIME CG4709 UPSTREAM CG4709 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
3L	4149718	3L_4149718_SNP [dm3] 3L_4149718_SNP [dm6]	G	A	2.007e^-4	0.732	INTRON CG1299	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	10840175	3L_10840175_SNP [dm3] 3L_10847075_SNP [dm6]	C	A	2.012e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	12846090	2R_12846090_SNP [dm3] 2R_16958585_SNP [dm6]	G	A	2.017e^-4	0.732	SYNONYMOUS_CODING CG6665 DOWNSTREAM CG9010	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6550808	2L_6550808_SNP [dm3] 2L_6550808_SNP [dm6]	T	A	2.017e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_HSA
X	3539427	X_3539427_DEL [dm3] X_3645394_DEL [dm6]	AG	A	2.023e^-4	0.732	UTR_5_PRIME AstA-R1
2L	9134660	2L_9134660_SNP [dm3] 2L_9134660_SNP [dm6]	C	T	2.024e^-4	0.732	INTRON CG32982
X	519125	X_519125_SNP [dm3] X_625092_SNP [dm6]	C	T	2.025e^-4	0.732	UTR_5_PRIME CG13364 UPSTREAM CR45475 & 1 other DOWNSTREAM CG13369	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	532293	X_532293_SNP [dm3] X_638260_SNP [dm6]	G	C	2.026e^-4	0.732	INTRON su_s_	TF binding site BDTNP1_TFBS_dl
3R	8569086	3R_8569086_SNP [dm3] 3R_12743364_SNP [dm6]	G	A	2.027e^-4	0.732	SYNONYMOUS_CODING CG5999
X	13283381	X_13283381_SNP [dm3] X_13389348_SNP [dm6]	T	A	2.037e^-4	0.732	DOWNSTREAM CG1662 & 1 other INTERGENIC
X	21283662	X_21283662_INS [dm3] X_21412635_INS [dm6]	T	TATGAGGCTAATTT...	2.043e^-4	0.732	INTERGENIC
2L	3959542	2L_3959542_SNP [dm3] 2L_3959542_SNP [dm6]	G	A	2.043e^-4	0.732	INTRON fred
2L	12697652	2L_12697652_SNP [dm3] 2L_12697652_SNP [dm6]	C	T	2.048e^-4	0.732	SYNONYMOUS_CODING PICK1 UPSTREAM CG5781	TF binding site mE1_TFBS_cad
X	559535	X_559535_SNP [dm3] X_665502_SNP [dm6]	T	G	2.050e^-4	0.732	INTERGENIC	transposable element FlyBase
3R	20877374	3R_20877374_SNP [dm3] 3R_25051652_SNP [dm6]	T	C	2.056e^-4	0.732	INTRON CG11791	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21011660	X_21011660_SNP [dm3] X_21140633_SNP [dm6]	A	T	2.076e^-4	0.732	UTR_3_PRIME CG34120 DOWNSTREAM CG34120
2R	12121742	2R_12121742_SNP [dm3] 2R_16234237_SNP [dm6]	T	A	2.077e^-4	0.732	DOWNSTREAM CG7786 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8157429	3R_8157429_SNP [dm3] 3R_12331707_SNP [dm6]	A	G	2.078e^-4	0.732	INTERGENIC
2R	16270351	2R_16270351_SNP [dm3] 2R_20382846_SNP [dm6]	A	T	2.087e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	7905217	2R_7905217_SNP [dm3] 2R_12017712_SNP [dm6]	A	G	2.089e^-4	0.732	INTRON otk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_sens
X	2702696	X_2702696_SNP [dm3] X_2808663_SNP [dm6]	T	A	2.104e^-4	0.732	INTRON kirre
2L	12134038	2L_12134038_SNP [dm3] 2L_12134038_SNP [dm6]	C	G	2.112e^-4	0.732	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	15525812	2R_15525812_SNP [dm3] 2R_19638307_SNP [dm6]	G	A	2.113e^-4	0.732	DOWNSTREAM CG18367 & 2 others INTERGENIC
3L	15033545	3L_15033545_SNP [dm3] 3L_15040445_SNP [dm6]	C	T	2.113e^-4	0.732	INTRON Sytbeta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2309211	3L_2309211_SNP [dm3] 3L_2309211_SNP [dm6]	G	A	2.114e^-4	0.732	INTERGENIC
3R	9893016	3R_9893016_SNP [dm3] 3R_14067294_SNP [dm6]	C	G	2.121e^-4	0.732	INTRON foxo
2L	12078930	2L_12078930_SNP [dm3] 2L_12078930_SNP [dm6]	T	C	2.123e^-4	0.732	UPSTREAM CR44591 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	457512	X_457512_SNP [dm3] X_563479_SNP [dm6]	C	G	2.128e^-4	0.732	INTRON Appl
3L	4510228	3L_4510228_DEL [dm3] 3L_4510228_DEL [dm6]	AA	A	2.130e^-4	0.732	DOWNSTREAM Tie INTERGENIC
2L	6107771	2L_6107771_SNP [dm3] 2L_6107771_SNP [dm6]	G	A	2.133e^-4	0.732	INTRON stai
X	3624346	X_3624346_SNP [dm3] X_3730313_SNP [dm6]	T	C	2.136e^-4	0.732	INTRON tlk
3L	5647307	3L_5647307_SNP [dm3] 3L_5654207_SNP [dm6]	T	C	2.136e^-4	0.732	UPSTREAM lin-28 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6330010	2L_6330010_SNP [dm3] 2L_6330010_SNP [dm6]	C	T	2.138e^-4	0.732	INTRON PDZ-GEF	TF binding site mE1_TFBS_cad
3R	22193000	3R_22193000_SNP [dm3] 3R_26367278_SNP [dm6]	G	C	2.155e^-4	0.732	INTERGENIC
3R	22193002	3R_22193002_SNP [dm3] 3R_26367280_SNP [dm6]	G	C	2.155e^-4	0.732	INTERGENIC
X	557374	X_557374_SNP [dm3] X_663341_SNP [dm6]	G	C	2.155e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_sens
X	14102068	X_14102068_SNP [dm3] X_14208035_SNP [dm6]	G	A	2.155e^-4	0.732	INTRON l_1_G0007 & 1 other	TF binding site BDTNP1_TFBS_dl
X	17114011	X_17114011_SNP [dm3] X_17219978_SNP [dm6]	T	G	2.171e^-4	0.732	DOWNSTREAM CG12998 INTERGENIC
2L	20771581	2L_20771581_SNP [dm3] 2L_20771581_SNP [dm6]	C	T	2.171e^-4	0.732	SYNONYMOUS_CODING cad	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	16126383	2L_16126383_SNP [dm3] 2L_16126383_SNP [dm6]	A	C	2.173e^-4	0.732	INTERGENIC
X	526109	X_526109_SNP [dm3] X_632076_SNP [dm6]	T	C	2.175e^-4	0.732	SYNONYMOUS_CODING l_1_1Bi	TF binding site mE1_TFBS_sens
X	21283409	X_21283409_SNP [dm3] X_21412382_SNP [dm6]	G	A	2.175e^-4	0.732	INTERGENIC
X	563753	X_563753_SNP [dm3] X_669720_SNP [dm6]	G	A	2.176e^-4	0.732	INTERGENIC
3R	18832035	3R_18832035_SNP [dm3] 3R_23006313_SNP [dm6]	C	A	2.179e^-4	0.732	INTRON CG34375
2R	13390726	2R_13390726_SNP [dm3] 2R_17503221_SNP [dm6]	A	C	2.183e^-4	0.732	INTRON CG43164	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	564091	X_564091_SNP [dm3] X_670058_SNP [dm6]	G	C	2.189e^-4	0.732	INTERGENIC
2L	11857762	2L_11857762_SNP [dm3] 2L_11857762_SNP [dm6]	C	T	2.195e^-4	0.732	INTRON Pde1c
2R	16343945	2R_16343945_SNP [dm3] 2R_20456440_SNP [dm6]	C	T	2.196e^-4	0.732	INTRON CG12484
2L	9134009	2L_9134009_SNP [dm3] 2L_9134009_SNP [dm6]	T	G	2.200e^-4	0.732	INTRON CG32982
X	563805	X_563805_SNP [dm3] X_669772_SNP [dm6]	G	T	2.207e^-4	0.732	INTERGENIC
3R	18825230	3R_18825230_DEL [dm3] 3R_22999508_DEL [dm6]	GATGATGATGACT...	G	2.208e^-4	0.732	UPSTREAM Nha2 DOWNSTREAM CG34375 INTERGENIC
2R	14157418	2R_14157418_SNP [dm3] 2R_18269913_SNP [dm6]	T	A	2.212e^-4	0.732	INTERGENIC
3R	14509956	3R_14509956_INS [dm3] 3R_18684234_INS [dm6]	AT	TGA	2.214e^-4	0.732	INTRON CG7708
3L	1236103	3L_1236103_SNP [dm3] 3L_1236103_SNP [dm6]	G	A	2.215e^-4	0.732	DOWNSTREAM CG33966 & 1 other INTRON CG9194	TF binding site mE1_TFBS_Trl
3R	12951938	3R_12951938_SNP [dm3] 3R_17126216_SNP [dm6]	T	C	2.216e^-4	0.732	NON_SYNONYMOUS_CODING CG17477 UPSTREAM cher & 1 other DOWNSTREAM CR44238	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24971076	3R_24971076_SNP [dm3] 3R_29145354_SNP [dm6]	A	G	2.219e^-4	0.732	SYNONYMOUS_CODING CG14516 DOWNSTREAM CG14511
3L	1669525	3L_1669525_SNP [dm3] 3L_1669525_SNP [dm6]	T	A	2.220e^-4	0.732	UPSTREAM RpL23A DOWNSTREAM CG13930 INTRON RabX5	TF binding site mE1_TFBS_chinmo
3L	17911036	3L_17911036_SNP [dm3] 3L_17917936_SNP [dm6]	G	A	2.222e^-4	0.732	INTERGENIC
2L	9136340	2L_9136340_SNP [dm3] 2L_9136340_SNP [dm6]	A	G	2.223e^-4	0.732	INTRON CG32982
2L	12157897	2L_12157897_SNP [dm3] 2L_12157897_SNP [dm6]	T	C	2.225e^-4	0.732	INTRON CG31760
X	554537	X_554537_SNP [dm3] X_660504_SNP [dm6]	T	G	2.237e^-4	0.732	INTERGENIC
2L	6819668	2L_6819668_SNP [dm3] 2L_6819668_SNP [dm6]	T	A	2.237e^-4	0.732	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2R	7528497	2R_7528497_SNP [dm3] 2R_11640992_SNP [dm6]	C	T	2.239e^-4	0.732	UPSTREAM CG9005 DOWNSTREAM CG9003 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6819622	2L_6819622_DEL [dm3] 2L_6819622_DEL [dm6]	TGCG	T	2.247e^-4	0.732	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2L	6819629	2L_6819629_SNP [dm3] 2L_6819629_SNP [dm6]	T	A	2.247e^-4	0.732	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2L	6819631	2L_6819631_DEL [dm3] 2L_6819631_DEL [dm6]	ATTCC	A	2.247e^-4	0.732	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
3R	9964972	3R_9964972_SNP [dm3] 3R_14139250_SNP [dm6]	C	T	2.252e^-4	0.732	INTERGENIC
3R	16828499	3R_16828499_DEL [dm3] 3R_21002777_DEL [dm6]	CC	C	2.252e^-4	0.732	INTRON Calx
3L	9634107	3L_9634107_SNP [dm3] 3L_9641007_SNP [dm6]	T	C	2.253e^-4	0.732	UPSTREAM CG18180 DOWNSTREAM CG18179 INTRON fry	TF binding site mE1_TFBS_cad
X	8810867	X_8810867_SNP [dm3] X_8916834_SNP [dm6]	C	T	2.262e^-4	0.732	INTRON rdgA
X	453989	X_453989_SNP [dm3] X_559956_SNP [dm6]	A	T	2.263e^-4	0.732	INTRON Appl
X	19259182	X_19259182_SNP [dm3] X_19365149_SNP [dm6]	G	A	2.267e^-4	0.732	INTRON kek5
2L	5839888	2L_5839888_SNP [dm3] 2L_5839888_SNP [dm6]	T	A	2.273e^-4	0.732	INTRON TrissinR
3L	9365739	3L_9365739_SNP [dm3] 3L_9372639_SNP [dm6]	T	C	2.277e^-4	0.732	UPSTREAM Hsp67Bb & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	559604	X_559604_SNP [dm3] X_665571_SNP [dm6]	T	C	2.282e^-4	0.732	INTERGENIC	transposable element FlyBase
3L	10799159	3L_10799159_SNP [dm3] 3L_10806059_SNP [dm6]	T	G	2.284e^-4	0.732	UPSTREAM CR44347 INTERGENIC
X	18818924	X_18818924_SNP [dm3] X_18924891_SNP [dm6]	G	C	2.285e^-4	0.732	INTERGENIC
3L	19227146	3L_19227146_SNP [dm3] 3L_19234046_SNP [dm6]	A	T	2.290e^-4	0.732	INTRON fz2
3R	14213218	3R_14213218_SNP [dm3] 3R_18387496_SNP [dm6]	T	A	2.296e^-4	0.732	NON_SYNONYMOUS_CODING Vha100-4 DOWNSTREAM cona	TF binding site mE1_TFBS_cad
3R	15743632	3R_15743632_SNP [dm3] 3R_19917910_SNP [dm6]	G	A	2.301e^-4	0.732	UPSTREAM CG4770 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	4426748	3L_4426748_SNP [dm3] 3L_4426748_SNP [dm6]	A	G	2.302e^-4	0.732	DOWNSTREAM CG15020 INTERGENIC
3R	8569087	3R_8569087_SNP [dm3] 3R_12743365_SNP [dm6]	G	T	2.305e^-4	0.732	SYNONYMOUS_CODING CG5999
3R	10628531	3R_10628531_SNP [dm3] 3R_14802809_SNP [dm6]	C	A	2.309e^-4	0.732	SYNONYMOUS_CODING CG14857
3L	14486162	3L_14486162_SNP [dm3] 3L_14493062_SNP [dm6]	A	T	2.311e^-4	0.732	INTRON bbg
3L	12299989	3L_12299989_SNP [dm3] 3L_12306889_SNP [dm6]	A	G	2.313e^-4	0.732	INTERGENIC
3R	18270901	3R_18270901_SNP [dm3] 3R_22445179_SNP [dm6]	A	T	2.316e^-4	0.732	SYNONYMOUS_CODING CG12499	TF binding site mE1_TFBS_sens
2L	9130680	2L_9130680_SNP [dm3] 2L_9130680_SNP [dm6]	T	C	2.318e^-4	0.732	INTRON CG32982
2L	5561706	2L_5561706_SNP [dm3] 2L_5561706_SNP [dm6]	T	G	2.334e^-4	0.732	SPLICE_SITE_REGION GluRIIB SYNONYMOUS_CODING GluRIIB
2L	9774952	2L_9774952_SNP [dm3] 2L_9774952_SNP [dm6]	A	G	2.336e^-4	0.732	NON_SYNONYMOUS_CODING ppk11	TF binding site mE1_TFBS_sens
2L	12078936	2L_12078936_SNP [dm3] 2L_12078936_SNP [dm6]	T	A	2.341e^-4	0.732	UPSTREAM CR44591 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	15801455	2R_15801455_SNP [dm3] 2R_19913950_SNP [dm6]	T	G	2.342e^-4	0.732	INTERGENIC
2L	12133872	2L_12133872_DEL [dm3] 2L_12133872_DEL [dm6]	GTTACATTTAG...	G	2.343e^-4	0.732	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	1669594	3L_1669594_SNP [dm3] 3L_1669594_SNP [dm6]	C	T	2.353e^-4	0.732	SYNONYMOUS_CODING RabX5 UPSTREAM RpL23A DOWNSTREAM CG13930	TF binding site mE1_TFBS_chinmo
X	536512	X_536512_SNP [dm3] X_642479_SNP [dm6]	C	A	2.358e^-4	0.732	NON_SYNONYMOUS_CODING su_s_	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	21283403	X_21283403_SNP [dm3] X_21412376_SNP [dm6]	G	A	2.360e^-4	0.732	INTERGENIC
3R	7836319	3R_7836319_SNP [dm3] 3R_12010597_SNP [dm6]	A	T	2.371e^-4	0.732	UPSTREAM GCC185 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7836422	3R_7836422_SNP [dm3] 3R_12010700_SNP [dm6]	C	T	2.371e^-4	0.732	UPSTREAM GCC185 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8569003	3R_8569003_SNP [dm3] 3R_12743281_SNP [dm6]	G	A	2.373e^-4	0.732	SYNONYMOUS_CODING CG5999
X	14663443	X_14663443_SNP [dm3] X_14769410_SNP [dm6]	G	A	2.374e^-4	0.732	INTERGENIC
2R	10609312	2R_10609312_SNP [dm3] 2R_14721807_SNP [dm6]	A	G	2.375e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_inv
3R	21808847	3R_21808847_SNP [dm3] 3R_25983125_SNP [dm6]	G	A	2.381e^-4	0.732	UTR_5_PRIME Nf1 DOWNSTREAM CG42261	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4162786	3L_4162786_SNP [dm3] 3L_4162786_SNP [dm6]	A	G	2.385e^-4	0.732	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	23190095	3R_23190095_SNP [dm3] 3R_27364373_SNP [dm6]	T	G	2.388e^-4	0.732	INTRON CG42534	TF binding site mE1_TFBS_chinmo
2L	12134107	2L_12134107_SNP [dm3] 2L_12134107_SNP [dm6]	C	T	2.393e^-4	0.732	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13160260	3L_13160260_SNP [dm3] 3L_13167160_SNP [dm6]	C	A	2.396e^-4	0.732	INTERGENIC
3R	12961471	3R_12961471_SNP [dm3] 3R_17135749_SNP [dm6]	T	G	2.407e^-4	0.732	UPSTREAM CG5246 DOWNSTREAM CG31267 INTERGENIC
3R	8479027	3R_8479027_SNP [dm3] 3R_12653305_SNP [dm6]	A	G	2.407e^-4	0.732	DOWNSTREAM Dtg INTERGENIC
3L	14395559	3L_14395559_SNP [dm3] 3L_14402459_SNP [dm6]	T	C	2.413e^-4	0.732	DOWNSTREAM stwl INTRON CG3868
3L	17910673	3L_17910673_INS [dm3] 3L_17917573_INS [dm6]	C	AAGTA	2.414e^-4	0.732	INTERGENIC
2L	13724533	2L_13724533_SNP [dm3] 2L_13724533_SNP [dm6]	C	A	2.424e^-4	0.732	UPSTREAM CG9014 INTERGENIC
2L	9230661	2L_9230661_SNP [dm3] 2L_9230661_SNP [dm6]	T	A	2.425e^-4	0.732	INTRON tai
2L	15790503	2L_15790503_SNP [dm3] 2L_15790503_SNP [dm6]	T	A	2.428e^-4	0.732	DOWNSTREAM CG18109 INTERGENIC
2L	6329708	2L_6329708_SNP [dm3] 2L_6329708_SNP [dm6]	C	T	2.428e^-4	0.732	INTRON PDZ-GEF	TF binding site mE1_TFBS_cad
2L	4805545	2L_4805545_DEL [dm3] 2L_4805545_DEL [dm6]	AAAAATTTTCCA...	A	2.440e^-4	0.732	INTERGENIC
3R	7836290	3R_7836290_SNP [dm3] 3R_12010568_SNP [dm6]	C	A	2.442e^-4	0.732	UPSTREAM GCC185 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	3318558	X_3318558_SNP [dm3] X_3424525_SNP [dm6]	C	A	2.444e^-4	0.732	INTRON CR44999 & 1 other
3L	1876883	3L_1876883_SNP [dm3] 3L_1876883_SNP [dm6]	T	C	2.450e^-4	0.732	SYNONYMOUS_CODING CG13937 UPSTREAM dre4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_HSA
3L	462298	3L_462298_SNP [dm3] 3L_462298_SNP [dm6]	G	T	2.457e^-4	0.732	SYNONYMOUS_CODING klar UTR_5_PRIME klar
3L	4638556	3L_4638556_SNP [dm3] 3L_4638556_SNP [dm6]	T	G	2.457e^-4	0.732	INTRON axo
2R	4799208	2R_4799208_SNP [dm3] 2R_8911703_SNP [dm6]	G	A	2.468e^-4	0.732	SYNONYMOUS_CODING Pgi DOWNSTREAM CG30349	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	454847	X_454847_SNP [dm3] X_560814_SNP [dm6]	C	T	2.469e^-4	0.732	INTRON Appl
X	1042528	X_1042528_SNP [dm3] X_1148495_SNP [dm6]	A	G	2.471e^-4	0.732	INTERGENIC
3L	14377920	3L_14377920_SNP [dm3] 3L_14384820_SNP [dm6]	C	A	2.473e^-4	0.732	INTERGENIC
X	5569504	X_5569504_INS [dm3] X_5675471_INS [dm6]	T	TTCCCATATCCATATCCAT...	2.475e^-4	0.732	CODON_INSERTION Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15916363	2L_15916363_SNP [dm3] 2L_15916363_SNP [dm6]	A	C	2.476e^-4	0.732	UPSTREAM CG13244 INTRON beat-Ib
2R	10496688	2R_10496688_SNP [dm3] 2R_14609183_SNP [dm6]	A	G	2.478e^-4	0.732	NON_SYNONYMOUS_CODING Su_var_2-HP2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2772677	3L_2772677_SNP [dm3] 3L_2772677_SNP [dm6]	A	G	2.479e^-4	0.732	SYNONYMOUS_CODING CG12093 UPSTREAM CG9977	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	5597770	3L_5597770_SNP [dm3] 3L_5604670_SNP [dm6]	C	T	2.487e^-4	0.732	UPSTREAM mthl2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17910676	3L_17910676_SNP [dm3] 3L_17917576_SNP [dm6]	T	A	2.489e^-4	0.732	INTERGENIC
2L	6819637	2L_6819637_SNP [dm3] 2L_6819637_SNP [dm6]	T	A	2.491e^-4	0.732	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
3R	4203628	3R_4203628_SNP [dm3] 3R_8377906_SNP [dm6]	C	T	2.492e^-4	0.732	INTRON CG45263
3R	8650436	3R_8650436_SNP [dm3] 3R_12824714_SNP [dm6]	C	T	2.494e^-4	0.732	INTERGENIC
X	484205	X_484205_SNP [dm3] X_590172_SNP [dm6]	A	C	2.494e^-4	0.732	UPSTREAM vnd INTRON vnd & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12322445	2R_12322445_SNP [dm3] 2R_16434940_SNP [dm6]	T	C	2.501e^-4	0.732	SYNONYMOUS_CODING CG7848	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	559524	X_559524_SNP [dm3] X_665491_SNP [dm6]	A	G	2.516e^-4	0.732	INTERGENIC	transposable element FlyBase
X	21283933	X_21283933_MNP [dm3] X_21412906_MNP [dm6]	CAA	TCT	2.516e^-4	0.732	INTERGENIC
2L	17177277	2L_17177277_SNP [dm3] 2L_17177277_SNP [dm6]	G	C	2.517e^-4	0.732	NON_SYNONYMOUS_CODING Gr36a DOWNSTREAM CR44394
3R	14556040	3R_14556040_SNP [dm3] 3R_18730318_SNP [dm6]	A	C	2.519e^-4	0.732	SPLICE_SITE_REGION Cha INTRON Cha	TF binding site mE1_TFBS_chinmo
2R	15722984	2R_15722984_SNP [dm3] 2R_19835479_SNP [dm6]	T	A	2.521e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6926858	2R_6926858_SNP [dm3] 2R_11039353_SNP [dm6]	C	T	2.524e^-4	0.732	INTRON luna
3L	441028	3L_441028_SNP [dm3] 3L_441028_SNP [dm6]	C	T	2.529e^-4	0.732	START_GAINED klar UTR_5_PRIME klar INTRON klar	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
3R	22975194	3R_22975194_SNP [dm3] 3R_27149472_SNP [dm6]	T	A	2.538e^-4	0.732	INTRON CG6051	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	22851600	3R_22851600_SNP [dm3] 3R_27025878_SNP [dm6]	G	C	2.547e^-4	0.732	SYNONYMOUS_CODING CG6271 INTRON RYa-R
2L	12699054	2L_12699054_SNP [dm3] 2L_12699054_SNP [dm6]	T	C	2.549e^-4	0.732	UTR_3_PRIME CG17036 DOWNSTREAM PICK1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6904430	2L_6904430_SNP [dm3] 2L_6904430_SNP [dm6]	C	T	2.550e^-4	0.732	SYNONYMOUS_CODING Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19128605	3R_19128605_INS [dm3] 3R_23302883_INS [dm6]	A	AGTCTCAA	2.557e^-4	0.732	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	23564434	3R_23564434_SNP [dm3] 3R_27738712_SNP [dm6]	C	T	2.559e^-4	0.732	INTRON Ets98B
X	5443743	X_5443743_SNP [dm3] X_5549710_SNP [dm6]	A	G	2.559e^-4	0.732	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4617332	3L_4617332_SNP [dm3] 3L_4617332_SNP [dm6]	G	T	2.563e^-4	0.732	INTRON Src64B
X	6503382	X_6503382_SNP [dm3] X_6609349_SNP [dm6]	T	A	2.571e^-4	0.732	INTRON pigs
3L	4158065	3L_4158065_INS [dm3] 3L_4158065_INS [dm6]	G	AT	2.581e^-4	0.732	INTRON nab
2L	3330153	2L_3330153_SNP [dm3] 2L_3330153_SNP [dm6]	T	A	2.587e^-4	0.732	UPSTREAM CG3285 DOWNSTREAM CG33282 INTERGENIC
2L	1446434	2L_1446434_DEL [dm3] 2L_1446434_DEL [dm6]	CAAC	C	2.593e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15423013	X_15423013_DEL [dm3] X_15528980_DEL [dm6]	AA	A	2.595e^-4	0.732	INTRON Ac13E
3L	10839488	3L_10839488_SNP [dm3] 3L_10846388_SNP [dm6]	G	A	2.595e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
2L	8178280	2L_8178280_SNP [dm3] 2L_8178280_SNP [dm6]	G	A	2.603e^-4	0.732	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8479025	3R_8479025_SNP [dm3] 3R_12653303_SNP [dm6]	T	G	2.612e^-4	0.732	DOWNSTREAM Dtg INTERGENIC
2L	5457022	2L_5457022_SNP [dm3] 2L_5457022_SNP [dm6]	C	G	2.617e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	602341	X_602341_SNP [dm3] X_708308_SNP [dm6]	C	T	2.617e^-4	0.732	INTRON sdk
X	443709	X_443709_SNP [dm3] X_549676_SNP [dm6]	A	C	2.620e^-4	0.732	INTRON Appl	TF binding site mE1_TFBS_chinmo
X	501685	X_501685_SNP [dm3] X_607652_SNP [dm6]	T	A	2.623e^-4	0.732	INTRON CG13366	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	15122689	2L_15122689_DEL [dm3] 2L_15122689_DEL [dm6]	CC	C	2.625e^-4	0.732	INTERGENIC
2L	9230539	2L_9230539_SNP [dm3] 2L_9230539_SNP [dm6]	C	T	2.627e^-4	0.732	INTRON tai	TF binding site BDTNP1_TFBS_twi
3R	19802857	3R_19802857_SNP [dm3] 3R_23977135_SNP [dm6]	G	A	2.635e^-4	0.732	SYNONYMOUS_CODING CG31140	TF binding site mE1_TFBS_chinmo
3L	4164977	3L_4164977_SNP [dm3] 3L_4164977_SNP [dm6]	A	G	2.636e^-4	0.732	NON_SYNONYMOUS_CODING mas
X	540916	X_540916_SNP [dm3] X_646883_SNP [dm6]	A	G	2.637e^-4	0.732	UPSTREAM Roc1a DOWNSTREAM CG13367 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12537809	3R_12537809_DEL [dm3] 3R_16712087_DEL [dm6]	CTCTGTTGGCGTC...	C	2.650e^-4	0.732	INTRON Ubx
3R	22548932	3R_22548932_SNP [dm3] 3R_26723210_SNP [dm6]	C	A	2.652e^-4	0.732	INTRON CG6420
3L	10206250	3L_10206250_SNP [dm3] 3L_10213150_SNP [dm6]	A	T	2.652e^-4	0.732	INTERGENIC
X	1043682	X_1043682_SNP [dm3] X_1149649_SNP [dm6]	T	C	2.654e^-4	0.732	INTERGENIC
X	541615	X_541615_SNP [dm3] X_647582_SNP [dm6]	T	C	2.657e^-4	0.732	SYNONYMOUS_CODING Roc1a DOWNSTREAM Hmt4-20 INTRON Roc1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4103044	3L_4103044_SNP [dm3] 3L_4103044_SNP [dm6]	C	T	2.675e^-4	0.732	UPSTREAM CG14995 & 1 other INTRON CG14995	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9148671	2L_9148671_SNP [dm3] 2L_9148671_SNP [dm6]	A	T	2.680e^-4	0.732	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5005323	3R_5005323_SNP [dm3] 3R_9179601_SNP [dm6]	A	T	2.682e^-4	0.732	DOWNSTREAM CG11997 INTRON pum
3L	3389813	3L_3389813_SNP [dm3] 3L_3389813_SNP [dm6]	C	T	2.687e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	955776	3L_955776_SNP [dm3] 3L_955776_SNP [dm6]	A	C	2.697e^-4	0.732	INTRON Glut1
2L	9137728	2L_9137728_SNP [dm3] 2L_9137728_SNP [dm6]	T	C	2.697e^-4	0.732	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	2771589	3L_2771589_SNP [dm3] 3L_2771589_SNP [dm6]	G	A	2.698e^-4	0.732	SYNONYMOUS_CODING CG9977 DOWNSTREAM CG12093	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	18808461	3R_18808461_SNP [dm3] 3R_22982739_SNP [dm6]	C	T	2.699e^-4	0.732	INTRON Nha2
X	559663	X_559663_SNP [dm3] X_665630_SNP [dm6]	A	G	2.708e^-4	0.732	INTERGENIC	transposable element FlyBase
2L	19475140	2L_19475140_SNP [dm3] 2L_19475140_SNP [dm6]	T	A	2.709e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15774634	2L_15774634_SNP [dm3] 2L_15774634_SNP [dm6]	A	G	2.711e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	1209811	3L_1209811_SNP [dm3] 3L_1209811_SNP [dm6]	G	A	2.730e^-4	0.732	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	484190	X_484190_SNP [dm3] X_590157_SNP [dm6]	A	C	2.731e^-4	0.732	UPSTREAM vnd INTRON vnd & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	435373	3L_435373_SNP [dm3] 3L_435373_SNP [dm6]	G	A	2.734e^-4	0.732	SYNONYMOUS_CODING klar UPSTREAM snmRNA:438	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	9230662	2L_9230662_SNP [dm3] 2L_9230662_SNP [dm6]	T	A	2.734e^-4	0.732	INTRON tai
3L	12299919	3L_12299919_SNP [dm3] 3L_12306819_SNP [dm6]	G	T	2.740e^-4	0.732	INTERGENIC
2L	9136441	2L_9136441_SNP [dm3] 2L_9136441_SNP [dm6]	T	A	2.740e^-4	0.732	INTRON CG32982
3L	3389869	3L_3389869_SNP [dm3] 3L_3389869_SNP [dm6]	T	G	2.741e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3389873	3L_3389873_SNP [dm3] 3L_3389873_SNP [dm6]	T	C	2.741e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3389880	3L_3389880_INS [dm3] 3L_3389880_INS [dm6]	A	AGTAGCTATTTAAACCCATA...	2.741e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2778410	X_2778410_SNP [dm3] X_2884377_SNP [dm6]	T	A	2.744e^-4	0.732	UPSTREAM CG14418 DOWNSTREAM CG14419 INTRON kirre
2L	8405688	2L_8405688_SNP [dm3] 2L_8405688_SNP [dm6]	C	T	2.748e^-4	0.732	SYNONYMOUS_CODING emb	TF binding site mE1_TFBS_sens
2L	1841848	2L_1841848_SNP [dm3] 2L_1841848_SNP [dm6]	G	C	2.752e^-4	0.732	INTRON wry
3R	9378489	3R_9378489_DEL [dm3] 3R_13552767_DEL [dm6]	TTTGTTATT	T	2.753e^-4	0.732	INTERGENIC
2R	13868347	2R_13868347_SNP [dm3] 2R_17980842_SNP [dm6]	C	A	2.756e^-4	0.732	INTRON dpr13
X	21283936	X_21283936_INS [dm3] X_21412909_INS [dm6]	T	TTT	2.758e^-4	0.732	INTERGENIC
3R	17795785	3R_17795785_SNP [dm3] 3R_21970063_SNP [dm6]	C	G	2.761e^-4	0.732	INTRON Eip93F
3L	4177298	3L_4177298_SNP [dm3] 3L_4177298_SNP [dm6]	G	T	2.766e^-4	0.732	SYNONYMOUS_CODING Teh4 INTRON CG18675
3R	4998644	3R_4998644_SNP [dm3] 3R_9172922_SNP [dm6]	G	T	2.769e^-4	0.732	INTRON pum	TF binding site mE1_TFBS_bab1
3R	10138872	3R_10138872_SNP [dm3] 3R_14313150_SNP [dm6]	G	C	2.770e^-4	0.732	INTRON CG31321
3R	9378473	3R_9378473_SNP [dm3] 3R_13552751_SNP [dm6]	A	T	2.771e^-4	0.732	INTERGENIC
2L	9230610	2L_9230610_INS [dm3] 2L_9230610_INS [dm6]	A	AGGA	2.772e^-4	0.732	INTRON tai	TF binding site BDTNP1_TFBS_twi
3L	1218365	3L_1218365_SNP [dm3] 3L_1218365_SNP [dm6]	G	C	2.773e^-4	0.732	SYNONYMOUS_CODING LysP INTRON mwh
3R	7820600	3R_7820600_SNP [dm3] 3R_11994878_SNP [dm6]	T	C	2.775e^-4	0.732	INTRON Tk
2R	11575964	2R_11575964_SNP [dm3] 2R_15688459_SNP [dm6]	G	A	2.782e^-4	0.732	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16599411	3R_16599411_INS [dm3] 3R_20773689_INS [dm6]	A	AG	2.794e^-4	0.732	INTRON Syp	TF binding site BDTNP1_TFBS_twi
2L	2544222	2L_2544222_INS [dm3] 2L_2544222_INS [dm6]	G	GG	2.796e^-4	0.732	INTERGENIC
2L	4392429	2L_4392429_SNP [dm3] 2L_4392429_SNP [dm6]	T	C	2.797e^-4	0.732	DOWNSTREAM CG3652 INTRON Tps1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18728770	2L_18728770_SNP [dm3] 2L_18728770_SNP [dm6]	A	G	2.807e^-4	0.732	INTRON CG10348
2L	16549523	2L_16549523_SNP [dm3] 2L_16549523_SNP [dm6]	A	G	2.815e^-4	0.732	NON_SYNONYMOUS_CODING CG5968 INTRON CG42389
X	484210	X_484210_SNP [dm3] X_590177_SNP [dm6]	T	C	2.816e^-4	0.732	UPSTREAM vnd INTRON vnd & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3199145	3L_3199145_SNP [dm3] 3L_3199145_SNP [dm6]	T	C	2.817e^-4	0.732	UTR_5_PRIME gry UPSTREAM CG32276	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	7804361	3R_7804361_SNP [dm3] 3R_11978639_SNP [dm6]	C	G	2.828e^-4	0.732	SYNONYMOUS_CODING CG18547 UPSTREAM CR44135	TF binding site mE1_TFBS_cad
2L	15649006	2L_15649006_SNP [dm3] 2L_15649006_SNP [dm6]	G	A	2.832e^-4	0.732	SYNONYMOUS_CODING CG4587
2L	9109597	2L_9109597_SNP [dm3] 2L_9109597_SNP [dm6]	G	A	2.836e^-4	0.732	INTERGENIC
3R	16797037	3R_16797037_SNP [dm3] 3R_20971315_SNP [dm6]	T	C	2.836e^-4	0.732	INTRON Atpalpha
3L	2119167	3L_2119167_SNP [dm3] 3L_2119167_SNP [dm6]	G	A	2.842e^-4	0.732	INTRON zormin
3L	2119275	3L_2119275_SNP [dm3] 3L_2119275_SNP [dm6]	C	T	2.842e^-4	0.732	INTRON zormin
2L	9109655	2L_9109655_SNP [dm3] 2L_9109655_SNP [dm6]	C	T	2.843e^-4	0.732	INTERGENIC
2L	9119168	2L_9119168_SNP [dm3] 2L_9119168_SNP [dm6]	T	C	2.849e^-4	0.732	UPSTREAM CR44617 INTERGENIC
3L	3995014	3L_3995014_SNP [dm3] 3L_3995014_SNP [dm6]	G	C	2.855e^-4	0.732	INTERGENIC
2L	1039081	2L_1039081_SNP [dm3] 2L_1039081_SNP [dm6]	G	T	2.861e^-4	0.732	DOWNSTREAM CG4415 INTRON IA-2	TF binding site mE1_TFBS_chinmo
3L	3397412	3L_3397412_SNP [dm3] 3L_3397412_SNP [dm6]	A	T	2.865e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	10671765	2R_10671765_SNP [dm3] 2R_14784260_SNP [dm6]	T	C	2.867e^-4	0.732	INTRON kn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	18587645	2L_18587645_SNP [dm3] 2L_18587645_SNP [dm6]	A	C	2.874e^-4	0.732	INTRON Pde11
3L	17273452	3L_17273452_SNP [dm3] 3L_17280352_SNP [dm6]	T	C	2.876e^-4	0.732	INTERGENIC
X	7119495	X_7119495_SNP [dm3] X_7225462_SNP [dm6]	C	A	2.876e^-4	0.732	UPSTREAM CG9650 INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13049836	3L_13049836_SNP [dm3] 3L_13056736_SNP [dm6]	C	T	2.886e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23832885	3R_23832885_SNP [dm3] 3R_28007163_SNP [dm6]	A	G	2.894e^-4	0.732	INTERGENIC
X	515344	X_515344_SNP [dm3] X_621311_SNP [dm6]	T	A	2.895e^-4	0.732	UPSTREAM mod_r_ & 1 other DOWNSTREAM CR45474 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	5666857	2L_5666857_SNP [dm3] 2L_5666857_SNP [dm6]	G	T	2.900e^-4	0.732	INTRON Hsp60C
2L	20639499	2L_20639499_SNP [dm3] 2L_20639499_SNP [dm6]	T	G	2.904e^-4	0.732	UPSTREAM CG31680 EXON CR43158
2L	15390047	2L_15390047_SNP [dm3] 2L_15390047_SNP [dm6]	C	G	2.917e^-4	0.732	INTERGENIC
X	14466132	X_14466132_SNP [dm3] X_14572099_SNP [dm6]	T	A	2.921e^-4	0.732	INTERGENIC
3L	1238330	3L_1238330_SNP [dm3] 3L_1238330_SNP [dm6]	A	G	2.922e^-4	0.732	UPSTREAM CG9192 INTRON CG9194	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	4167727	3L_4167727_SNP [dm3] 3L_4167727_SNP [dm6]	G	C	2.923e^-4	0.732	UPSTREAM mas DOWNSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	5821406	2L_5821406_SNP [dm3] 2L_5821406_SNP [dm6]	G	A	2.937e^-4	0.732	INTERGENIC
3R	9109420	3R_9109420_SNP [dm3] 3R_13283698_SNP [dm6]	A	C	2.943e^-4	0.732	SPLICE_SITE_REGION CG8630 SYNONYMOUS_CODING CG8630	TF binding site mE1_TFBS_cad
2L	3306263	2L_3306263_SNP [dm3] 2L_3306263_SNP [dm6]	G	A	2.954e^-4	0.732	INTRON CG3277
X	10834509	X_10834509_DEL [dm3] X_10940476_DEL [dm6]	AAAA	G	2.954e^-4	0.732	INTRON Myo10A	TF binding site BDTNP1_TFBS_twi
X	2400488	X_2400488_SNP [dm3] X_2506455_SNP [dm6]	G	T	2.956e^-4	0.732	UPSTREAM trol INTRON trol
3L	4667592	3L_4667592_SNP [dm3] 3L_4667592_SNP [dm6]	G	A	2.959e^-4	0.732	UPSTREAM CG32236 INTRON axo
2L	12132618	2L_12132618_SNP [dm3] 2L_12132618_SNP [dm6]	C	G	2.963e^-4	0.732	INTRON rho-6
3L	3199128	3L_3199128_SNP [dm3] 3L_3199128_SNP [dm6]	G	A	2.970e^-4	0.732	UTR_5_PRIME gry UPSTREAM CG32276	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	17155638	2L_17155638_SNP [dm3] 2L_17155638_SNP [dm6]	T	A	2.973e^-4	0.732	INTRON beat-IIIa & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18504486	2L_18504486_SNP [dm3] 2L_18504486_SNP [dm6]	A	G	2.976e^-4	0.732	UPSTREAM kon INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11547441	3L_11547441_SNP [dm3] 3L_11554341_SNP [dm6]	C	G	2.978e^-4	0.732	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	17639010	X_17639010_SNP [dm3] X_17744977_SNP [dm6]	G	T	2.978e^-4	0.732	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	519258	X_519258_SNP [dm3] X_625225_SNP [dm6]	T	C	2.980e^-4	0.732	UPSTREAM CR45475 & 2 others DOWNSTREAM CG13369 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19360794	3R_19360794_SNP [dm3] 3R_23535072_SNP [dm6]	A	C	2.984e^-4	0.732	UTR_3_PRIME CG16732 UPSTREAM CG10170
3L	1404392	3L_1404392_SNP [dm3] 3L_1404392_SNP [dm6]	T	C	2.997e^-4	0.732	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	12846057	2R_12846057_SNP [dm3] 2R_16958552_SNP [dm6]	T	A	3.006e^-4	0.732	SYNONYMOUS_CODING CG6665 DOWNSTREAM CG9010	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4229731	X_4229731_SNP [dm3] X_4335698_SNP [dm6]	C	T	3.010e^-4	0.732	INTRON norpA
X	559628	X_559628_SNP [dm3] X_665595_SNP [dm6]	T	G	3.011e^-4	0.732	INTERGENIC	transposable element FlyBase
3L	17910678	3L_17910678_SNP [dm3] 3L_17917578_SNP [dm6]	T	C	3.017e^-4	0.732	INTERGENIC
3L	10208779	3L_10208779_SNP [dm3] 3L_10215679_SNP [dm6]	C	A	3.019e^-4	0.732	UTR_5_PRIME CG8065
3L	4160232	3L_4160232_SNP [dm3] 3L_4160232_SNP [dm6]	C	T	3.020e^-4	0.732	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	12603032	2R_12603032_SNP [dm3] 2R_16715527_SNP [dm6]	C	A	3.021e^-4	0.732	INTRON CG30463
2L	7443993	2L_7443993_SNP [dm3] 2L_7443993_SNP [dm6]	A	G	3.033e^-4	0.732	SPLICE_SITE_REGION CG5973 INTRON CG5973
X	20774462	X_20774462_SNP [dm3] X_20903435_SNP [dm6]	A	T	3.038e^-4	0.732	INTRON shakB
3R	25949180	3R_25949180_SNP [dm3] 3R_30123458_SNP [dm6]	T	A	3.042e^-4	0.732	UPSTREAM CG45072 DOWNSTREAM CG45073 INTERGENIC
3R	13653419	3R_13653419_SNP [dm3] 3R_17827697_SNP [dm6]	A	G	3.058e^-4	0.732	INTRON tinc	TF binding site mE1_TFBS_cad
2R	15801448	2R_15801448_SNP [dm3] 2R_19913943_SNP [dm6]	G	A	3.065e^-4	0.732	INTERGENIC
2L	20552676	2L_20552676_SNP [dm3] 2L_20552676_SNP [dm6]	C	A	3.068e^-4	0.732	INTERGENIC
3L	10091811	3L_10091811_SNP [dm3] 3L_10098711_SNP [dm6]	T	C	3.070e^-4	0.732	UPSTREAM CG42825 DOWNSTREAM CG42826 INTRON dpr6
3R	25952702	3R_25952702_SNP [dm3] 3R_30126980_SNP [dm6]	T	C	3.074e^-4	0.732	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3078001	3R_3078001_SNP [dm3] 3R_7252279_SNP [dm6]	C	A	3.076e^-4	0.732	UTR_3_PRIME Gld UPSTREAM Obp84a DOWNSTREAM CG10050
3R	18412876	3R_18412876_SNP [dm3] 3R_22587154_SNP [dm6]	G	C	3.077e^-4	0.732	UPSTREAM btn & 1 other DOWNSTREAM CG6937 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19623645	X_19623645_SNP [dm3] X_19729612_SNP [dm6]	A	G	3.082e^-4	0.732	UTR_3_PRIME CG12531
3L	10838522	3L_10838522_SNP [dm3] 3L_10845422_SNP [dm6]	C	A	3.087e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	708073	3L_708073_SNP [dm3] 3L_708073_SNP [dm6]	C	T	3.089e^-4	0.732	SPLICE_SITE_REGION CG13895 UTR_5_PRIME CG13895 DOWNSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	9204676	2L_9204676_SNP [dm3] 2L_9204676_SNP [dm6]	C	T	3.090e^-4	0.732	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12128707	2L_12128707_SNP [dm3] 2L_12128707_SNP [dm6]	G	C	3.093e^-4	0.732	NON_SYNONYMOUS_CODING CG17211	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18412842	3R_18412842_SNP [dm3] 3R_22587120_SNP [dm6]	G	A	3.100e^-4	0.732	UPSTREAM btn & 1 other DOWNSTREAM CG6937 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11951643	3L_11951643_SNP [dm3] 3L_11958543_SNP [dm6]	A	G	3.103e^-4	0.732	NON_SYNONYMOUS_CODING CG43294 UPSTREAM CG11570 DOWNSTREAM prc
3L	3945824	3L_3945824_SNP [dm3] 3L_3945824_SNP [dm6]	C	T	3.103e^-4	0.732	SYNONYMOUS_CODING CG14982	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6819649	2L_6819649_SNP [dm3] 2L_6819649_SNP [dm6]	A	C	3.108e^-4	0.732	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2R	15801407	2R_15801407_SNP [dm3] 2R_19913902_SNP [dm6]	A	G	3.109e^-4	0.732	INTERGENIC
2R	16861864	2R_16861864_SNP [dm3] 2R_20974359_SNP [dm6]	G	C	3.111e^-4	0.732	UPSTREAM CG15649 INTERGENIC
3R	21712691	3R_21712691_SNP [dm3] 3R_25886969_SNP [dm6]	A	G	3.126e^-4	0.732	SYNONYMOUS_CODING SppL
3L	4510235	3L_4510235_SNP [dm3] 3L_4510235_SNP [dm6]	G	C	3.127e^-4	0.732	DOWNSTREAM Tie INTERGENIC
X	3538415	X_3538415_SNP [dm3] X_3644382_SNP [dm6]	G	T	3.129e^-4	0.732	INTRON AstA-R1
3R	21892961	3R_21892961_SNP [dm3] 3R_26067239_SNP [dm6]	C	A	3.131e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	5840039	2L_5840039_SNP [dm3] 2L_5840039_SNP [dm6]	A	G	3.133e^-4	0.732	INTRON TrissinR
3L	582965	3L_582965_SNP [dm3] 3L_582965_SNP [dm6]	G	T	3.133e^-4	0.732	UTR_3_PRIME Kah DOWNSTREAM Ppm1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15037505	3L_15037505_SNP [dm3] 3L_15044405_SNP [dm6]	C	T	3.141e^-4	0.732	UPSTREAM ind INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	461664	X_461664_SNP [dm3] X_567631_SNP [dm6]	C	T	3.144e^-4	0.732	INTRON Appl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9365788	3L_9365788_SNP [dm3] 3L_9372688_SNP [dm6]	A	G	3.150e^-4	0.732	UPSTREAM Hsp67Bb & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5725848	2L_5725848_SNP [dm3] 2L_5725848_SNP [dm6]	A	T	3.161e^-4	0.732	DOWNSTREAM CG14006 INTRON CG11030
2L	4043976	2L_4043976_DEL [dm3] 2L_4043976_DEL [dm6]	GG	T	3.169e^-4	0.732	INTRON ed
3R	3312532	3R_3312532_SNP [dm3] 3R_7486810_SNP [dm6]	A	C	3.174e^-4	0.732	UTR_3_PRIME alpha-Est10
3R	4847829	3R_4847829_SNP [dm3] 3R_9022107_SNP [dm6]	G	A	3.182e^-4	0.732	SYNONYMOUS_CODING neur UPSTREAM CR31429 EXON CR31429	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4121032	3L_4121032_SNP [dm3] 3L_4121032_SNP [dm6]	C	T	3.192e^-4	0.732	INTRON Chd64
X	397381	X_397381_SNP [dm3] X_503348_SNP [dm6]	C	T	3.193e^-4	0.732	UTR_3_PRIME svr INTRON svr	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4325651	2L_4325651_SNP [dm3] 2L_4325651_SNP [dm6]	A	G	3.199e^-4	0.732	INTRON CG16857
2R	15801433	2R_15801433_SNP [dm3] 2R_19913928_SNP [dm6]	T	G	3.199e^-4	0.732	INTERGENIC
2R	15801437	2R_15801437_SNP [dm3] 2R_19913932_SNP [dm6]	A	C	3.199e^-4	0.732	INTERGENIC
2R	15801441	2R_15801441_SNP [dm3] 2R_19913936_SNP [dm6]	A	T	3.199e^-4	0.732	INTERGENIC
2R	15801492	2R_15801492_SNP [dm3] 2R_19913987_SNP [dm6]	C	A	3.199e^-4	0.732	INTERGENIC
3L	14921186	3L_14921186_SNP [dm3] 3L_14928086_SNP [dm6]	T	A	3.205e^-4	0.732	INTRON DCX-EMAP
3L	4173226	3L_4173226_SNP [dm3] 3L_4173226_SNP [dm6]	C	T	3.212e^-4	0.732	SYNONYMOUS_CODING Ero1L UPSTREAM CG18675
X	519277	X_519277_DEL [dm3] X_625244_DEL [dm6]	TGC	T	3.226e^-4	0.732	UPSTREAM CR45475 & 2 others DOWNSTREAM CG13369 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4904694	2L_4904694_SNP [dm3] 2L_4904694_SNP [dm6]	C	A	3.232e^-4	0.732	NON_SYNONYMOUS_CODING CG2837 DOWNSTREAM CG3036	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14024360	2R_14024360_SNP [dm3] 2R_18136855_SNP [dm6]	A	G	3.236e^-4	0.732	NON_SYNONYMOUS_CODING Pcl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8423866	2L_8423866_SNP [dm3] 2L_8423866_SNP [dm6]	C	G	3.240e^-4	0.732	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3L	17910648	3L_17910648_SNP [dm3] 3L_17917548_SNP [dm6]	A	G	3.242e^-4	0.732	INTERGENIC
2L	15153804	2L_15153804_SNP [dm3] 2L_15153804_SNP [dm6]	C	G	3.252e^-4	0.732	INTERGENIC
X	8121893	X_8121893_SNP [dm3] X_8227860_SNP [dm6]	A	T	3.253e^-4	0.732	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
X	13442900	X_13442900_SNP [dm3] X_13548867_SNP [dm6]	A	T	3.255e^-4	0.732	INTERGENIC
2L	8737415	2L_8737415_SNP [dm3] 2L_8737415_SNP [dm6]	G	A	3.256e^-4	0.732	INTRON raw
2L	9972954	2L_9972954_SNP [dm3] 2L_9972954_SNP [dm6]	A	C	3.258e^-4	0.732	INTERGENIC
3R	22882334	3R_22882334_SNP [dm3] 3R_27056612_SNP [dm6]	T	A	3.263e^-4	0.732	INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	15781514	X_15781514_SNP [dm3] X_15887481_SNP [dm6]	A	T	3.269e^-4	0.732	UPSTREAM tay DOWNSTREAM MSBP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14975650	3R_14975650_SNP [dm3] 3R_19149928_SNP [dm6]	A	T	3.269e^-4	0.732	DOWNSTREAM CR44107 INTRON CG5835
3R	21599500	3R_21599500_SNP [dm3] 3R_25773778_SNP [dm6]	T	C	3.270e^-4	0.732	NON_SYNONYMOUS_CODING CG17198 UTR_3_PRIME CG17197
3R	20600928	3R_20600928_SNP [dm3] 3R_24775206_SNP [dm6]	G	T	3.274e^-4	0.732	INTRON CG42331
3L	10839589	3L_10839589_SNP [dm3] 3L_10846489_SNP [dm6]	A	G	3.291e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	11502422	2R_11502422_SNP [dm3] 2R_15614917_SNP [dm6]	G	T	3.293e^-4	0.732	UTR_5_PRIME CG42524	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9081937	3L_9081937_SNP [dm3] 3L_9088837_SNP [dm6]	A	C	3.293e^-4	0.732	SYNONYMOUS_CODING Tequila INTRON Tequila
X	546240	X_546240_SNP [dm3] X_652207_SNP [dm6]	G	A	3.299e^-4	0.732	SYNONYMOUS_CODING Hmt4-20	TF binding site mE1_TFBS_chinmo
X	6120660	X_6120660_SNP [dm3] X_6226627_SNP [dm6]	G	A	3.299e^-4	0.732	SYNONYMOUS_CODING CG14446	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8600070	3L_8600070_SNP [dm3] 3L_8606970_SNP [dm6]	C	G	3.303e^-4	0.732	INTRON CG6282
X	534586	X_534586_SNP [dm3] X_640553_SNP [dm6]	T	G	3.309e^-4	0.732	NON_SYNONYMOUS_CODING su_s_	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22489739	3R_22489739_SNP [dm3] 3R_26664017_SNP [dm6]	G	A	3.310e^-4	0.732	INTRON beat-VII
3R	12960014	3R_12960014_SNP [dm3] 3R_17134292_SNP [dm6]	T	C	3.310e^-4	0.732	SYNONYMOUS_CODING CG31267 DOWNSTREAM CG31266
3R	11443639	3R_11443639_SNP [dm3] 3R_15617917_SNP [dm6]	G	T	3.314e^-4	0.732	INTERGENIC
3L	11436860	3L_11436860_SNP [dm3] 3L_11443760_SNP [dm6]	G	T	3.329e^-4	0.732	DOWNSTREAM CR44549 INTERGENIC
3R	15222205	3R_15222205_SNP [dm3] 3R_19396483_SNP [dm6]	C	A	3.332e^-4	0.732	DOWNSTREAM CG31244 INTRON Ino80
3L	1877218	3L_1877218_SNP [dm3] 3L_1877218_SNP [dm6]	T	G	3.333e^-4	0.732	UPSTREAM dre4 INTRON CG13937	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	11177871	X_11177871_SNP [dm3] X_11283838_SNP [dm6]	A	T	3.336e^-4	0.732	INTRON CG44422
3L	9153798	3L_9153798_SNP [dm3] 3L_9160698_SNP [dm6]	A	T	3.337e^-4	0.732	INTRON Rdl
3L	16560777	3L_16560777_SNP [dm3] 3L_16567677_SNP [dm6]	C	A	3.340e^-4	0.732	DOWNSTREAM CG43206 INTRON Mipp1
3L	386757	3L_386757_DEL [dm3] 3L_386757_DEL [dm6]	AGG	A	3.345e^-4	0.732	INTRON trh
3L	14508712	3L_14508712_DEL [dm3] 3L_14515612_DEL [dm6]	TT	T	3.352e^-4	0.732	INTRON bbg
3L	4638561	3L_4638561_SNP [dm3] 3L_4638561_SNP [dm6]	C	A	3.353e^-4	0.732	INTRON axo
2L	19098023	2L_19098023_SNP [dm3] 2L_19098023_SNP [dm6]	A	T	3.354e^-4	0.732	INTRON Lim3	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	19099542	2L_19099542_SNP [dm3] 2L_19099542_SNP [dm6]	C	T	3.354e^-4	0.732	INTRON Lim3
X	10836719	X_10836719_SNP [dm3] X_10942686_SNP [dm6]	C	T	3.362e^-4	0.732	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2L	3881321	2L_3881321_SNP [dm3] 2L_3881321_SNP [dm6]	C	G	3.375e^-4	0.732	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8172371	2L_8172371_SNP [dm3] 2L_8172371_SNP [dm6]	T	G	3.381e^-4	0.732	INTRON Piezo
X	3538669	X_3538669_SNP [dm3] X_3644636_SNP [dm6]	G	A	3.383e^-4	0.732	INTRON AstA-R1
3R	22199863	3R_22199863_INS [dm3] 3R_26374141_INS [dm6]	C	CC	3.389e^-4	0.732	INTERGENIC
3L	8587822	3L_8587822_SNP [dm3] 3L_8594722_SNP [dm6]	T	C	3.390e^-4	0.732	SYNONYMOUS_CODING CG43078 UTR_3_PRIME CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	572236	X_572236_INS [dm3] X_678203_INS [dm6]	G	GTGG	3.393e^-4	0.732	INTERGENIC
2L	9258652	2L_9258652_SNP [dm3] 2L_9258652_SNP [dm6]	A	T	3.395e^-4	0.732	INTRON Ggamma30A
2L	7170499	2L_7170499_SNP [dm3] 2L_7170499_SNP [dm6]	A	C	3.402e^-4	0.732	INTERGENIC
X	561877	X_561877_INS [dm3] X_667844_INS [dm6]	T	TTGT	3.406e^-4	0.732	INTERGENIC
3R	8619089	3R_8619089_SNP [dm3] 3R_12793367_SNP [dm6]	T	A	3.409e^-4	0.732	INTERGENIC
2R	16512676	2R_16512676_SNP [dm3] 2R_20625171_SNP [dm6]	T	C	3.412e^-4	0.732	SYNONYMOUS_CODING CG16742	TF binding site mE1_TFBS_sens
2L	5089836	2L_5089836_SNP [dm3] 2L_5089836_SNP [dm6]	G	A	3.417e^-4	0.732	INTRON pgant5
X	554818	X_554818_INS [dm3] X_660785_INS [dm6]	C	CTAACTATTT	3.425e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10566536	3L_10566536_SNP [dm3] 3L_10573436_SNP [dm6]	G	T	3.425e^-4	0.732	INTRON A2bp1	TF binding site mE1_TFBS_chinmo
3R	26972112	3R_26972112_SNP [dm3] 3R_31146390_SNP [dm6]	T	C	3.435e^-4	0.732	INTRON Gycbeta100B
3L	4166532	3L_4166532_SNP [dm3] 3L_4166532_SNP [dm6]	C	G	3.443e^-4	0.732	INTRON mas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	17682466	3R_17682466_SNP [dm3] 3R_21856744_SNP [dm6]	T	G	3.443e^-4	0.732	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	18504436	2L_18504436_SNP [dm3] 2L_18504436_SNP [dm6]	G	C	3.450e^-4	0.732	UPSTREAM kon INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	12923028	X_12923028_SNP [dm3] X_13028995_SNP [dm6]	A	G	3.454e^-4	0.732	INTRON rad
2R	11645187	2R_11645187_DEL [dm3] 2R_15757682_DEL [dm6]	TT	T	3.454e^-4	0.732	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4510683	3L_4510683_DEL [dm3] 3L_4510683_DEL [dm6]	AA	A	3.458e^-4	0.732	DOWNSTREAM Tie INTERGENIC
X	10835742	X_10835742_SNP [dm3] X_10941709_SNP [dm6]	T	C	3.462e^-4	0.732	INTRON Myo10A	TF binding site mE1_TFBS_chinmo
3R	15672908	3R_15672908_SNP [dm3] 3R_19847186_SNP [dm6]	A	G	3.474e^-4	0.732	UPSTREAM CG4662 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	19347798	X_19347798_SNP [dm3] X_19453765_SNP [dm6]	C	T	3.475e^-4	0.732	INTRON kek5
2L	9136381	2L_9136381_SNP [dm3] 2L_9136381_SNP [dm6]	A	T	3.477e^-4	0.732	INTRON CG32982
X	561830	X_561830_SNP [dm3] X_667797_SNP [dm6]	C	G	3.486e^-4	0.732	INTERGENIC
X	6859138	X_6859138_SNP [dm3] X_6965105_SNP [dm6]	G	A	3.496e^-4	0.732	SYNONYMOUS_CODING CG14431 INTRON CG32732	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8150885	3R_8150885_SNP [dm3] 3R_12325163_SNP [dm6]	C	T	3.503e^-4	0.732	UTR_3_PRIME CG10013
X	10835935	X_10835935_SNP [dm3] X_10941902_SNP [dm6]	C	T	3.505e^-4	0.732	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2L	6628483	2L_6628483_SNP [dm3] 2L_6628483_SNP [dm6]	G	A	3.508e^-4	0.732	INTRON Oatp26F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1623493	2L_1623493_SNP [dm3] 2L_1623493_SNP [dm6]	G	A	3.516e^-4	0.732	UPSTREAM CR44603 EXON CR44603
X	10835920	X_10835920_SNP [dm3] X_10941887_SNP [dm6]	C	T	3.522e^-4	0.732	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2L	3330341	2L_3330341_SNP [dm3] 2L_3330341_SNP [dm6]	T	G	3.523e^-4	0.732	UPSTREAM CG3285 DOWNSTREAM CG33282 INTERGENIC
3R	17618552	3R_17618552_SNP [dm3] 3R_21792830_SNP [dm6]	G	T	3.529e^-4	0.732	INTRON CASK	TF binding site mE1_TFBS_cad
X	16584113	X_16584113_SNP [dm3] X_16690080_SNP [dm6]	A	T	3.533e^-4	0.732	INTRON Sep4
3L	14471553	3L_14471553_SNP [dm3] 3L_14478453_SNP [dm6]	C	A	3.538e^-4	0.732	INTRON bbg
3L	14395556	3L_14395556_DEL [dm3] 3L_14402456_DEL [dm6]	TT	T	3.538e^-4	0.732	DOWNSTREAM stwl INTRON CG3868
2L	9140069	2L_9140069_SNP [dm3] 2L_9140069_SNP [dm6]	G	A	3.539e^-4	0.732	INTRON CG32982
3L	3954197	3L_3954197_SNP [dm3] 3L_3954197_SNP [dm6]	C	T	3.542e^-4	0.732	DOWNSTREAM CG12605 INTERGENIC
2L	9134173	2L_9134173_SNP [dm3] 2L_9134173_SNP [dm6]	A	G	3.545e^-4	0.732	INTRON CG32982
2L	5486233	2L_5486233_SNP [dm3] 2L_5486233_SNP [dm6]	T	C	3.547e^-4	0.732	UPSTREAM CR45287 INTERGENIC
3L	1218335	3L_1218335_SNP [dm3] 3L_1218335_SNP [dm6]	C	T	3.552e^-4	0.732	SYNONYMOUS_CODING LysP INTRON mwh
2L	18731200	2L_18731200_SNP [dm3] 2L_18731200_SNP [dm6]	G	T	3.559e^-4	0.732	UTR_5_PRIME CG10348
3L	5756141	3L_5756141_SNP [dm3] 3L_5763041_SNP [dm6]	C	T	3.560e^-4	0.732	SPLICE_SITE_REGION CG10576 UPSTREAM snoRNA:Psi18S-1397 DOWNSTREAM snoRNA:684 & 1 other INTRON CG10576
3L	1233556	3L_1233556_SNP [dm3] 3L_1233556_SNP [dm6]	T	C	3.562e^-4	0.732	SYNONYMOUS_CODING CG33965 UPSTREAM CG33966 DOWNSTREAM mwh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7440083	3R_7440083_SNP [dm3] 3R_11614361_SNP [dm6]	G	C	3.567e^-4	0.732	INTRON Jupiter	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_sens
2L	9139276	2L_9139276_SNP [dm3] 2L_9139276_SNP [dm6]	A	T	3.567e^-4	0.732	INTRON CG32982	TF binding site BDTNP1_TFBS_twi
3R	9973666	3R_9973666_INS [dm3] 3R_14147944_INS [dm6]	G	GAC	3.570e^-4	0.732	DOWNSTREAM CG14355 INTERGENIC
3R	14717472	3R_14717472_SNP [dm3] 3R_18891750_SNP [dm6]	C	G	3.570e^-4	0.732	INTERGENIC
2L	9246217	2L_9246217_DEL [dm3] 2L_9246217_DEL [dm6]	AT	A	3.573e^-4	0.732	UTR_3_PRIME tai
3L	2287230	3L_2287230_SNP [dm3] 3L_2287230_SNP [dm6]	C	T	3.583e^-4	0.732	INTRON MsR2
2L	12850997	2L_12850997_SNP [dm3] 2L_12850997_SNP [dm6]	G	T	3.586e^-4	0.732	INTERGENIC
X	13448682	X_13448682_SNP [dm3] X_13554649_SNP [dm6]	C	T	3.591e^-4	0.732	UPSTREAM CG11816 INTRON CG11816
2L	9138716	2L_9138716_SNP [dm3] 2L_9138716_SNP [dm6]	A	T	3.595e^-4	0.732	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7832652	3R_7832652_SNP [dm3] 3R_12006930_SNP [dm6]	C	T	3.596e^-4	0.732	DOWNSTREAM KLHL18 INTERGENIC
2R	10638854	2R_10638854_SNP [dm3] 2R_14751349_SNP [dm6]	T	C	3.606e^-4	0.732	SYNONYMOUS_CODING Rpn6	TF binding site mE1_TFBS_sens
X	457329	X_457329_SNP [dm3] X_563296_SNP [dm6]	T	A	3.621e^-4	0.732	INTRON Appl
3R	6861827	3R_6861827_SNP [dm3] 3R_11036105_SNP [dm6]	C	G	3.625e^-4	0.732	INTRON CG34114
2R	18869098	2R_18869098_SNP [dm3] 2R_22981575_SNP [dm6]	T	C	3.626e^-4	0.732	DOWNSTREAM CG32834 INTERGENIC
3L	9634102	3L_9634102_SNP [dm3] 3L_9641002_SNP [dm6]	T	C	3.631e^-4	0.732	UPSTREAM CG18180 DOWNSTREAM CG18179 INTRON fry	TF binding site mE1_TFBS_cad
2L	7170504	2L_7170504_SNP [dm3] 2L_7170504_SNP [dm6]	C	T	3.632e^-4	0.732	INTERGENIC
3R	9791907	3R_9791907_SNP [dm3] 3R_13966185_SNP [dm6]	G	T	3.637e^-4	0.732	SYNONYMOUS_CODING Orc2 DOWNSTREAM rdx	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5471350	X_5471350_SNP [dm3] X_5577317_SNP [dm6]	G	A	3.643e^-4	0.732	INTERGENIC
3R	23472834	3R_23472834_SNP [dm3] 3R_27647112_SNP [dm6]	T	G	3.647e^-4	0.732	UTR_5_PRIME tau UPSTREAM tau INTRON tau
2L	12851007	2L_12851007_SNP [dm3] 2L_12851007_SNP [dm6]	C	T	3.652e^-4	0.732	INTERGENIC
3L	8377985	3L_8377985_SNP [dm3] 3L_8384885_SNP [dm6]	G	A	3.658e^-4	0.732	INTRON ImpE1	TF binding site mE1_TFBS_chinmo
3R	21896860	3R_21896860_SNP [dm3] 3R_26071138_SNP [dm6]	T	A	3.670e^-4	0.732	EXON CR44950
2L	16175378	2L_16175378_SNP [dm3] 2L_16175378_SNP [dm6]	T	C	3.674e^-4	0.732	INTRON Ca-alpha1D
2R	12415229	2R_12415229_SNP [dm3] 2R_16527724_SNP [dm6]	G	A	3.675e^-4	0.732	INTRON Sema-2a
3R	7115021	3R_7115021_SNP [dm3] 3R_11289299_SNP [dm6]	C	A	3.676e^-4	0.732	INTRON CR31386
2L	11857555	2L_11857555_SNP [dm3] 2L_11857555_SNP [dm6]	C	A	3.678e^-4	0.732	INTRON Pde1c
2R	10138821	2R_10138821_SNP [dm3] 2R_14251316_SNP [dm6]	A	C	3.681e^-4	0.732	INTRON Mdr50	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	10803308	3L_10803308_SNP [dm3] 3L_10810208_SNP [dm6]	C	T	3.684e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10803312	3L_10803312_SNP [dm3] 3L_10810212_SNP [dm6]	A	G	3.684e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	529528	X_529528_SNP [dm3] X_635495_SNP [dm6]	A	G	3.687e^-4	0.732	UTR_5_PRIME Dredd UPSTREAM su_s_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	19480064	2L_19480064_SNP [dm3] 2L_19480064_SNP [dm6]	C	T	3.689e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9194541	2L_9194541_SNP [dm3] 2L_9194541_SNP [dm6]	G	C	3.689e^-4	0.732	INTRON tai
X	539762	X_539762_SNP [dm3] X_645729_SNP [dm6]	C	A	3.689e^-4	0.732	SYNONYMOUS_CODING CG13367	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10839605	3L_10839605_SNP [dm3] 3L_10846505_SNP [dm6]	T	G	3.693e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	18412899	3R_18412899_SNP [dm3] 3R_22587177_SNP [dm6]	A	G	3.699e^-4	0.732	UPSTREAM btn & 1 other DOWNSTREAM CG6937 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10665079	2L_10665079_SNP [dm3] 2L_10665079_SNP [dm6]	A	G	3.704e^-4	0.732	INTRON CG31871
X	6735080	X_6735080_DEL [dm3] X_6841047_DEL [dm6]	AA	A	3.705e^-4	0.732	INTRON CG14435
X	14663307	X_14663307_SNP [dm3] X_14769274_SNP [dm6]	A	G	3.706e^-4	0.732	INTERGENIC
3R	22517821	3R_22517821_SNP [dm3] 3R_26692099_SNP [dm6]	T	C	3.713e^-4	0.732	DOWNSTREAM TwdlQ INTERGENIC
3R	14510174	3R_14510174_SNP [dm3] 3R_18684452_SNP [dm6]	C	T	3.728e^-4	0.732	SYNONYMOUS_CODING CG7708
3R	18776081	3R_18776081_SNP [dm3] 3R_22950359_SNP [dm6]	C	T	3.729e^-4	0.732	INTRON klg
2L	10669091	2L_10669091_SNP [dm3] 2L_10669091_SNP [dm6]	A	G	3.731e^-4	0.732	INTRON CG31871
3L	10209508	3L_10209508_SNP [dm3] 3L_10216408_SNP [dm6]	C	T	3.734e^-4	0.732	SYNONYMOUS_CODING CG8065
3L	10839596	3L_10839596_SNP [dm3] 3L_10846496_SNP [dm6]	A	T	3.735e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	14409314	2R_14409314_SNP [dm3] 2R_18521809_SNP [dm6]	G	A	3.740e^-4	0.732	INTRON CG43066	TF binding site mE1_TFBS_chinmo
2L	4277661	2L_4277661_SNP [dm3] 2L_4277661_SNP [dm6]	T	C	3.744e^-4	0.732	DOWNSTREAM Art2 INTERGENIC
2L	11077255	2L_11077255_SNP [dm3] 2L_11077255_SNP [dm6]	A	C	3.748e^-4	0.732	INTRON AstC	TF binding site BDTNP1_TFBS_hb
2L	18771846	2L_18771846_SNP [dm3] 2L_18771846_SNP [dm6]	C	A	3.757e^-4	0.732	UPSTREAM ham INTRON ham
2R	12603030	2R_12603030_SNP [dm3] 2R_16715525_SNP [dm6]	A	T	3.761e^-4	0.732	INTRON CG30463
X	484200	X_484200_SNP [dm3] X_590167_SNP [dm6]	T	C	3.764e^-4	0.732	UPSTREAM vnd INTRON vnd & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15036614	3L_15036614_SNP [dm3] 3L_15043514_SNP [dm6]	C	T	3.773e^-4	0.732	SYNONYMOUS_CODING ind UPSTREAM Rpn12R INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19915144	3R_19915144_SNP [dm3] 3R_24089422_SNP [dm6]	A	G	3.774e^-4	0.732	INTRON 4EHP
2L	6765125	2L_6765125_SNP [dm3] 2L_6765125_SNP [dm6]	A	G	3.778e^-4	0.732	SYNONYMOUS_CODING CG11321
2R	11764521	2R_11764521_SNP [dm3] 2R_15877016_SNP [dm6]	C	A	3.780e^-4	0.732	INTRON sli
X	19011265	X_19011265_INS [dm3] X_19117232_INS [dm6]	C	CAA	3.780e^-4	0.732	INTERGENIC
3L	4510294	3L_4510294_SNP [dm3] 3L_4510294_SNP [dm6]	A	T	3.787e^-4	0.732	DOWNSTREAM Tie INTERGENIC
3L	9365760	3L_9365760_SNP [dm3] 3L_9372660_SNP [dm6]	C	T	3.787e^-4	0.732	UPSTREAM Hsp67Bb & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16700662	2R_16700662_SNP [dm3] 2R_20813157_SNP [dm6]	A	T	3.788e^-4	0.732	INTERGENIC
3R	22544880	3R_22544880_SNP [dm3] 3R_26719158_SNP [dm6]	G	A	3.789e^-4	0.732	SYNONYMOUS_CODING CG5484 DOWNSTREAM CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3940555	2L_3940555_SNP [dm3] 2L_3940555_SNP [dm6]	T	C	3.802e^-4	0.732	INTRON fred
2R	11048206	2R_11048206_SNP [dm3] 2R_15160701_SNP [dm6]	T	C	3.803e^-4	0.732	INTRON igl
3L	4510095	3L_4510095_DEL [dm3] 3L_4510095_DEL [dm6]	AC	A	3.805e^-4	0.732	DOWNSTREAM Tie INTERGENIC
2L	18696111	2L_18696111_SNP [dm3] 2L_18696111_SNP [dm6]	G	T	3.806e^-4	0.732	UTR_5_PRIME CG10338 UPSTREAM CG10383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9134102	2L_9134102_SNP [dm3] 2L_9134102_SNP [dm6]	A	C	3.808e^-4	0.732	INTRON CG32982
2L	9138626	2L_9138626_SNP [dm3] 2L_9138626_SNP [dm6]	C	G	3.808e^-4	0.732	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4116783	3L_4116783_SNP [dm3] 3L_4116783_SNP [dm6]	C	T	3.817e^-4	0.732	INTRON Chd64
2L	10620436	2L_10620436_SNP [dm3] 2L_10620436_SNP [dm6]	G	A	3.817e^-4	0.732	INTRON Trim9
2L	18720019	2L_18720019_SNP [dm3] 2L_18720019_SNP [dm6]	T	C	3.822e^-4	0.732	INTRON CG10348
3L	3946598	3L_3946598_SNP [dm3] 3L_3946598_SNP [dm6]	C	A	3.828e^-4	0.732	UTR_3_PRIME CG14982 DOWNSTREAM CG14982
2L	12239308	2L_12239308_SNP [dm3] 2L_12239308_SNP [dm6]	C	T	3.842e^-4	0.732	INTRON aret
X	535071	X_535071_SNP [dm3] X_641038_SNP [dm6]	C	T	3.854e^-4	0.732	INTRON su_s_
2L	12239307	2L_12239307_SNP [dm3] 2L_12239307_SNP [dm6]	T	C	3.857e^-4	0.732	INTRON aret
2L	11501599	2L_11501599_SNP [dm3] 2L_11501599_SNP [dm6]	A	C	3.865e^-4	0.732	UPSTREAM spz4 INTERGENIC
3R	15057506	3R_15057506_SNP [dm3] 3R_19231784_SNP [dm6]	G	A	3.866e^-4	0.732	SYNONYMOUS_CODING unc79 DOWNSTREAM CG3773	TF binding site mE1_TFBS_chinmo
X	6735084	X_6735084_SNP [dm3] X_6841051_SNP [dm6]	T	A	3.867e^-4	0.732	INTRON CG14435
X	453100	X_453100_SNP [dm3] X_559067_SNP [dm6]	A	G	3.869e^-4	0.732	INTRON Appl
3L	4511648	3L_4511648_SNP [dm3] 3L_4511648_SNP [dm6]	G	A	3.873e^-4	0.732	INTRON Tie
X	454644	X_454644_SNP [dm3] X_560611_SNP [dm6]	A	C	3.875e^-4	0.732	SYNONYMOUS_CODING Appl INTRON Appl
3R	21539433	3R_21539433_SNP [dm3] 3R_25713711_SNP [dm6]	C	T	3.878e^-4	0.732	INTRON LpR2
3R	14885940	3R_14885940_SNP [dm3] 3R_19060218_SNP [dm6]	A	G	3.880e^-4	0.732	INTRON cdi
X	21951223	X_21951223_SNP [dm3] X_22549387_SNP [dm6]	G	T	3.883e^-4	0.732	INTERGENIC
3R	25949130	3R_25949130_SNP [dm3] 3R_30123408_SNP [dm6]	A	G	3.887e^-4	0.732	UPSTREAM CG45072 DOWNSTREAM CG45073 INTERGENIC
3L	3199053	3L_3199053_SNP [dm3] 3L_3199053_SNP [dm6]	G	A	3.888e^-4	0.732	UPSTREAM gry & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	10206421	3L_10206421_SNP [dm3] 3L_10213321_SNP [dm6]	T	C	3.896e^-4	0.732	INTERGENIC
2R	1162377	2R_1162377_SNP [dm3] 2R_5274872_SNP [dm6]	A	T	3.899e^-4	0.732	INTRON d4
3R	14213271	3R_14213271_SNP [dm3] 3R_18387549_SNP [dm6]	C	T	3.901e^-4	0.732	DOWNSTREAM cona INTRON Vha100-4	TF binding site mE1_TFBS_cad
3R	23247397	3R_23247397_SNP [dm3] 3R_27421675_SNP [dm6]	A	G	3.901e^-4	0.732	INTRON side
2L	4044055	2L_4044055_SNP [dm3] 2L_4044055_SNP [dm6]	C	A	3.902e^-4	0.732	INTRON ed
3L	3203455	3L_3203455_SNP [dm3] 3L_3203455_SNP [dm6]	T	A	3.910e^-4	0.732	UPSTREAM CG32271 DOWNSTREAM CG33159 INTRON gry
3R	19285137	3R_19285137_SNP [dm3] 3R_23459415_SNP [dm6]	T	A	3.913e^-4	0.732	INTRON CG4374
2L	7793477	2L_7793477_SNP [dm3] 2L_7793477_SNP [dm6]	T	G	3.913e^-4	0.732	INTRON LKR	TF binding site mE1_TFBS_cad
2L	19885941	2L_19885941_SNP [dm3] 2L_19885941_SNP [dm6]	A	G	3.917e^-4	0.732	INTRON sick
X	13336706	X_13336706_SNP [dm3] X_13442673_SNP [dm6]	A	T	3.927e^-4	0.732	INTERGENIC
3L	10750349	3L_10750349_SNP [dm3] 3L_10757249_SNP [dm6]	C	T	3.931e^-4	0.732	INTERGENIC
X	19760607	X_19760607_INS [dm3] X_19866574_INS [dm6]	A	AA	3.935e^-4	0.732	INTRON Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8662672	2R_8662672_SNP [dm3] 2R_12775167_SNP [dm6]	G	T	3.935e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	4768437	X_4768437_INS [dm3] X_4874404_INS [dm6]	A	ACTGATTCAACA...	3.935e^-4	0.732	UPSTREAM CR43495 INTRON CG42594
2L	6762979	2L_6762979_DEL [dm3] 2L_6762979_DEL [dm6]	TTGCAGGGTTCGGCAA...	T	3.946e^-4	0.732	CODON_DELETION CG11321	TF binding site mE1_TFBS_sens
3L	4414167	3L_4414167_SNP [dm3] 3L_4414167_SNP [dm6]	G	A	3.950e^-4	0.732	UPSTREAM DOR INTRON DOR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	15801395	2R_15801395_SNP [dm3] 2R_19913890_SNP [dm6]	T	A	3.954e^-4	0.732	INTERGENIC
X	17833545	X_17833545_SNP [dm3] X_17939512_SNP [dm6]	A	G	3.954e^-4	0.732	DOWNSTREAM Sh INTRON Sh
3R	25037516	3R_25037516_SNP [dm3] 3R_29211794_SNP [dm6]	G	T	3.955e^-4	0.732	INTERGENIC
2L	18500795	2L_18500795_SNP [dm3] 2L_18500795_SNP [dm6]	C	A	3.958e^-4	0.732	SYNONYMOUS_CODING kon	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11915303	3L_11915303_SNP [dm3] 3L_11922203_SNP [dm6]	C	A	3.961e^-4	0.732	SYNONYMOUS_CODING CG11588 DOWNSTREAM CG5718 INTRON CG44837	TF binding site mE1_TFBS_cad
2L	18504481	2L_18504481_SNP [dm3] 2L_18504481_SNP [dm6]	A	G	3.969e^-4	0.732	UPSTREAM kon INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	549323	X_549323_SNP [dm3] X_655290_SNP [dm6]	C	A	3.975e^-4	0.732	UPSTREAM Hmt4-20 & 1 other INTRON Hmt4-20	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	12553329	2L_12553329_SNP [dm3] 2L_12553329_SNP [dm6]	C	A	3.975e^-4	0.732	INTERGENIC
3L	11249114	3L_11249114_DEL [dm3] 3L_11256014_DEL [dm6]	TT	T	3.980e^-4	0.732	UTR_3_PRIME scyl DOWNSTREAM scyl
2R	14138968	2R_14138968_SNP [dm3] 2R_18251463_SNP [dm6]	G	A	3.991e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15649018	2L_15649018_SNP [dm3] 2L_15649018_SNP [dm6]	G	A	3.992e^-4	0.732	SPLICE_SITE_REGION CG4587 SYNONYMOUS_CODING CG4587
3L	4119346	3L_4119346_SNP [dm3] 3L_4119346_SNP [dm6]	G	T	3.996e^-4	0.732	INTRON Chd64
X	540297	X_540297_SNP [dm3] X_646264_SNP [dm6]	C	T	4.003e^-4	0.732	UTR_3_PRIME CG13367	TF binding site BDTNP1_TFBS_dl
2L	5881391	2L_5881391_SNP [dm3] 2L_5881391_SNP [dm6]	A	G	4.019e^-4	0.732	INTERGENIC
3L	17910682	3L_17910682_SNP [dm3] 3L_17917582_SNP [dm6]	C	T	4.021e^-4	0.732	INTERGENIC
X	4768456	X_4768456_INS [dm3] X_4874423_INS [dm6]	T	TAGTTAA	4.022e^-4	0.732	UPSTREAM CR43495 INTRON CG42594
X	4768459	X_4768459_DEL [dm3] X_4874426_DEL [dm6]	GG	A	4.022e^-4	0.732	UPSTREAM CR43495 INTRON CG42594

By genomic position
Variant impact
Gene name

W6 Vial 3 ascension (cm) phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results