©2022-2025 Deplancke lab, EPFL, 1015 Lausanne
By genomic position | |
Variant impact | |
Gene name |
Involved in binding site | |
Binding site |
Chromosome | Position | ID | Reference | Variant | p-value | FDR_BH | Transcript annotation | Binding site annotation | |
---|---|---|---|---|---|---|---|---|---|
X | 20431379 | X_20431379_SNP [dm3] X_20560352_SNP [dm6] | A | C | 2.922e-7 | 0.428 |
INTRON
RunxB |
||
2L | 1366572 | 2L_1366572_SNP [dm3] 2L_1366572_SNP [dm6] | A | C | 4.567e-7 | 0.428 |
INTERGENIC
|
||
2L | 14521189 | 2L_14521189_SNP [dm3] 2L_14521189_SNP [dm6] | G | A | 2.914e-6 | 0.866 |
INTERGENIC
|
||
3R | 1696894 | 3R_1696894_SNP [dm3] 3R_5871172_SNP [dm6] | T | G | 3.630e-6 | 0.866 |
INTRON
CG34113 |
||
3L | 15007753 | 3L_15007753_SNP [dm3] 3L_15014653_SNP [dm6] | T | A | 3.715e-6 | 0.866 |
UPSTREAM
Reck DOWNSTREAM Sytbeta INTERGENIC |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
|
|
X | 6215752 | X_6215752_SNP [dm3] X_6321719_SNP [dm6] | A | G | 3.775e-6 | 0.866 |
INTRON
CG15894 |
||
3R | 7719951 | 3R_7719951_SNP [dm3] 3R_11894229_SNP [dm6] | C | T | 3.836e-6 | 0.866 |
UTR_3_PRIME
Cad87A UPSTREAM CG6971 |
||
3R | 1696880 | 3R_1696880_SNP [dm3] 3R_5871158_SNP [dm6] | G | A | 4.035e-6 | 0.866 |
INTRON
CG34113 |
||
2L | 14521227 | 2L_14521227_SNP [dm3] 2L_14521227_SNP [dm6] | G | A | 4.306e-6 | 0.866 |
INTERGENIC
|
||
X | 8826917 | X_8826917_SNP [dm3] X_8932884_SNP [dm6] | C | T | 4.961e-6 | 0.866 |
INTRON
rdgA |
||
X | 19259130 | X_19259130_SNP [dm3] X_19365097_SNP [dm6] | A | G | 5.427e-6 | 0.866 |
INTRON
kek5 |
||
3R | 7736167 | 3R_7736167_SNP [dm3] 3R_11910445_SNP [dm6] | T | C | 6.138e-6 | 0.866 |
INTRON
Cad87A |
TF binding site
BDTNP1_TFBS_twi mE1_TFBS_HSA
|
|
3L | 19162111 | 3L_19162111_SNP [dm3] 3L_19169011_SNP [dm6] | C | T | 6.457e-6 | 0.866 |
INTRON
fz2 |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
|
|
3R | 25067238 | 3R_25067238_SNP [dm3] 3R_29241516_SNP [dm6] | G | C | 6.463e-6 | 0.866 |
SYNONYMOUS_CODING
CG31445 |
TF binding site
mE1_TFBS_HSA mE1_TFBS_sens
|
|
2L | 3430875 | 2L_3430875_SNP [dm3] 2L_3430875_SNP [dm6] | A | G | 9.732e-6 | 1 |
INTERGENIC
|
||
3R | 13196662 | 3R_13196662_SNP [dm3] 3R_17370940_SNP [dm6] | C | A | 1.029e-5 | 1 |
DOWNSTREAM
CR44256 INTERGENIC |
||
3R | 12254606 | 3R_12254606_SNP [dm3] 3R_16428884_SNP [dm6] | G | A | 1.056e-5 | 1 |
EXON
CR45631 |
regulatory region
REDfly_CRMs
|
|
3L | 3395070 | 3L_3395070_DEL [dm3] 3L_3395070_DEL [dm6] | TTTCT | T | 1.114e-5 | 1 |
DOWNSTREAM
CR45737 INTERGENIC |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
|
|
3L | 8149188 | 3L_8149188_SNP [dm3] 3L_8156088_SNP [dm6] | G | C | 1.187e-5 | 1 |
INTRON
CG42445 |
||
3R | 25067235 | 3R_25067235_SNP [dm3] 3R_29241513_SNP [dm6] | A | G | 1.254e-5 | 1 |
SYNONYMOUS_CODING
CG31445 |
TF binding site
mE1_TFBS_HSA mE1_TFBS_sens
|
|
2L | 1844748 | 2L_1844748_SNP [dm3] 2L_1844748_SNP [dm6] | A | C | 1.266e-5 | 1 |
INTRON
wry |
||
3L | 3397412 | 3L_3397412_SNP [dm3] 3L_3397412_SNP [dm6] | A | T | 1.314e-5 | 1 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_da mE1_TFBS_cad
|
|
2R | 16648781 | 2R_16648781_SNP [dm3] 2R_20761276_SNP [dm6] | C | T | 1.452e-5 | 1 |
INTERGENIC
|
||
X | 7995798 | X_7995798_SNP [dm3] X_8101765_SNP [dm6] | C | G | 1.548e-5 | 1 |
SPLICE_SITE_REGION
CG2258 UTR_5_PRIME CG2258 UPSTREAM CG2258 DOWNSTREAM Gclc INTRON CG2258 |
insulator
Insulator_Class_I.mE01
TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl |
|
3R | 7736232 | 3R_7736232_SNP [dm3] 3R_11910510_SNP [dm6] | A | T | 1.633e-5 | 1 |
INTRON
Cad87A |
TF binding site
mE1_TFBS_HSA
|
|
2L | 14522317 | 2L_14522317_SNP [dm3] 2L_14522317_SNP [dm6] | A | C | 1.645e-5 | 1 |
INTERGENIC
|
||
3L | 3197547 | 3L_3197547_SNP [dm3] 3L_3197547_SNP [dm6] | T | A | 1.701e-5 | 1 |
UTR_5_PRIME
CG14966 DOWNSTREAM CG32276 & 1 other |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
|
|
3R | 20567943 | 3R_20567943_SNP [dm3] 3R_24742221_SNP [dm6] | A | T | 1.900e-5 | 1 |
INTRON
tok |
||
X | 16884632 | X_16884632_SNP [dm3] X_16990599_SNP [dm6] | A | C | 1.953e-5 | 1 |
INTRON
CG45002 |
TF binding site
BDTNP1_TFBS_hb
|
|
2L | 2072017 | 2L_2072017_SNP [dm3] 2L_2072017_SNP [dm6] | G | A | 1.997e-5 | 1 |
INTRON
dpr3 |
||
2R | 16648775 | 2R_16648775_SNP [dm3] 2R_20761270_SNP [dm6] | C | G | 2.020e-5 | 1 |
INTERGENIC
|
||
2R | 16648776 | 2R_16648776_SNP [dm3] 2R_20761271_SNP [dm6] | A | C | 2.020e-5 | 1 |
INTERGENIC
|
||
2L | 5342687 | 2L_5342687_SNP [dm3] 2L_5342687_SNP [dm6] | A | T | 2.090e-5 | 1 |
UPSTREAM
CG12512 INTERGENIC |
||
2L | 2072012 | 2L_2072012_SNP [dm3] 2L_2072012_SNP [dm6] | T | A | 2.119e-5 | 1 |
INTRON
dpr3 |
||
2R | 2456080 | 2R_2456080_SNP [dm3] 2R_6568575_SNP [dm6] | A | G | 2.140e-5 | 1 |
INTRON
jing |
||
3R | 7742827 | 3R_7742827_SNP [dm3] 3R_11917105_SNP [dm6] | G | C | 2.192e-5 | 1 |
INTRON
Cad87A |
||
2R | 16648769 | 2R_16648769_SNP [dm3] 2R_20761264_SNP [dm6] | G | A | 2.312e-5 | 1 |
INTERGENIC
|
||
3R | 7736207 | 3R_7736207_SNP [dm3] 3R_11910485_SNP [dm6] | T | A | 2.313e-5 | 1 |
INTRON
Cad87A |
TF binding site
mE1_TFBS_HSA
|
|
3L | 3197577 | 3L_3197577_SNP [dm3] 3L_3197577_SNP [dm6] | A | G | 2.419e-5 | 1 |
START_GAINED
CG14966 UTR_5_PRIME CG14966 DOWNSTREAM CG32276 & 1 other |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
|
|
2L | 10923681 | 2L_10923681_SNP [dm3] 2L_10923681_SNP [dm6] | A | T | 2.433e-5 | 1 |
INTRON
dpr2 |
||
X | 20881101 | X_20881101_DEL [dm3] X_21010074_DEL [dm6] | CC | C | 2.450e-5 | 1 |
INTERGENIC
|
TF binding site
mE1_TFBS_cad mE1_TFBS_HSA
|
|
3R | 12578113 | 3R_12578113_SNP [dm3] 3R_16752391_SNP [dm6] | C | T | 2.590e-5 | 1 |
UPSTREAM
bxd INTRON bxd |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
|
|
X | 19259131 | X_19259131_SNP [dm3] X_19365098_SNP [dm6] | C | T | 2.957e-5 | 1 |
INTRON
kek5 |
||
2L | 1844384 | 2L_1844384_SNP [dm3] 2L_1844384_SNP [dm6] | A | C | 2.990e-5 | 1 |
SYNONYMOUS_CODING
wry |
TF binding site
mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
|
|
3R | 18747282 | 3R_18747282_SNP [dm3] 3R_22921560_SNP [dm6] | A | G | 3.012e-5 | 1 |
INTRON
klg |
||
2L | 1843778 | 2L_1843778_SNP [dm3] 2L_1843778_SNP [dm6] | T | C | 3.065e-5 | 1 |
SYNONYMOUS_CODING
wry |
TF binding site
mE1_TFBS_cad mE1_TFBS_HSA
|
|
X | 16884498 | X_16884498_SNP [dm3] X_16990465_SNP [dm6] | A | G | 3.165e-5 | 1 |
INTRON
CG45002 |
TF binding site
BDTNP1_TFBS_hb
|
|
X | 20431606 | X_20431606_SNP [dm3] X_20560579_SNP [dm6] | A | T | 3.280e-5 | 1 |
INTRON
RunxB |
||
3L | 9159359 | 3L_9159359_SNP [dm3] 3L_9166259_SNP [dm6] | C | A | 3.369e-5 | 1 |
INTRON
Rdl |
||
2L | 5342686 | 2L_5342686_SNP [dm3] 2L_5342686_SNP [dm6] | T | C | 3.415e-5 | 1 |
UPSTREAM
CG12512 INTERGENIC |
||
2L | 2071926 | 2L_2071926_SNP [dm3] 2L_2071926_SNP [dm6] | C | A | 3.607e-5 | 1 |
INTRON
dpr3 |
||
3L | 1060396 | 3L_1060396_SNP [dm3] 3L_1060396_SNP [dm6] | G | A | 3.686e-5 | 1 |
INTRON
bab1 |
||
X | 21134856 | X_21134856_DEL [dm3] X_21263829_DEL [dm6] | TGGGCTTTGCAT... | T | 3.751e-5 | 1 |
INTRON
CG32521 |
||
3L | 21948947 | 3L_21948947_SNP [dm3] 3L_21955847_SNP [dm6] | C | T | 3.773e-5 | 1 |
SYNONYMOUS_CODING
CG7458 |
TF binding site
mE1_TFBS_Trl
|
|
3R | 15225032 | 3R_15225032_SNP [dm3] 3R_19399310_SNP [dm6] | A | T | 3.859e-5 | 1 |
SYNONYMOUS_CODING
Ino80 UPSTREAM CG31244 |
||
3R | 7990683 | 3R_7990683_SNP [dm3] 3R_12164961_SNP [dm6] | G | A | 4.041e-5 | 1 |
NON_SYNONYMOUS_CODING
Cpn |
TF binding site
mE1_TFBS_chinmo mE1_TFBS_HSA
|
|
2L | 1754317 | 2L_1754317_SNP [dm3] 2L_1754317_SNP [dm6] | G | A | 4.114e-5 | 1 |
DOWNSTREAM
Gr22f INTERGENIC |
||
3L | 5886405 | 3L_5886405_DEL [dm3] 3L_5893305_DEL [dm6] | TTGCTACT | T | 4.118e-5 | 1 |
INTERGENIC
|
||
X | 16883973 | X_16883973_SNP [dm3] X_16989940_SNP [dm6] | C | G | 4.151e-5 | 1 |
INTRON
CG45002 |
||
3L | 3395069 | 3L_3395069_SNP [dm3] 3L_3395069_SNP [dm6] | A | G | 4.190e-5 | 1 |
DOWNSTREAM
CR45737 INTERGENIC |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
|
|
2L | 1844376 | 2L_1844376_SNP [dm3] 2L_1844376_SNP [dm6] | G | A | 4.241e-5 | 1 |
NON_SYNONYMOUS_CODING
wry |
TF binding site
mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
|
|
X | 20880894 | X_20880894_SNP [dm3] X_21009867_SNP [dm6] | A | C | 4.242e-5 | 1 |
INTERGENIC
|
||
3R | 15224983 | 3R_15224983_SNP [dm3] 3R_19399261_SNP [dm6] | G | A | 4.262e-5 | 1 |
UPSTREAM
CG31244 INTRON Ino80 |
||
2R | 5826842 | 2R_5826842_SNP [dm3] 2R_9939337_SNP [dm6] | G | A | 4.300e-5 | 1 |
INTRON
Mef2 |
regulatory region
REDfly_CRMs
|
|
3R | 12493888 | 3R_12493888_SNP [dm3] 3R_16668166_SNP [dm6] | T | G | 4.310e-5 | 1 |
INTRON
Ubx |
TF binding site
mE1_TFBS_HSA
|
|
2L | 11820959 | 2L_11820959_SNP [dm3] 2L_11820959_SNP [dm6] | T | G | 4.364e-5 | 1 |
INTRON
Pde1c |
||
3L | 5858207 | 3L_5858207_SNP [dm3] 3L_5865107_SNP [dm6] | A | T | 4.413e-5 | 1 |
INTERGENIC
|
TF binding site
mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
|
|
2R | 15031522 | 2R_15031522_SNP [dm3] 2R_19144017_SNP [dm6] | G | A | 4.449e-5 | 1 |
UPSTREAM
CR43399 INTRON ena |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
|
|
3R | 17066906 | 3R_17066906_SNP [dm3] 3R_21241184_SNP [dm6] | G | C | 4.497e-5 | 1 |
INTERGENIC
|
regulatory region
REDfly_CRMs
|
|
3R | 25067230 | 3R_25067230_SNP [dm3] 3R_29241508_SNP [dm6] | A | G | 4.547e-5 | 1 |
NON_SYNONYMOUS_CODING
CG31445 |
TF binding site
mE1_TFBS_HSA mE1_TFBS_sens
|
|
3L | 3911324 | 3L_3911324_SNP [dm3] 3L_3911324_SNP [dm6] | G | A | 4.579e-5 | 1 |
UTR_3_PRIME
Eip63F-1 DOWNSTREAM Eip63F-1 |
||
2L | 10571056 | 2L_10571056_SNP [dm3] 2L_10571056_SNP [dm6] | C | T | 4.622e-5 | 1 |
INTRON
Trim9 |
||
3R | 12104389 | 3R_12104389_SNP [dm3] 3R_16278667_SNP [dm6] | C | A | 4.950e-5 | 1 |
INTRON
gish |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
|
|
2L | 14522277 | 2L_14522277_SNP [dm3] 2L_14522277_SNP [dm6] | T | G | 5.005e-5 | 1 |
INTERGENIC
|
||
2R | 8712393 | 2R_8712393_SNP [dm3] 2R_12824888_SNP [dm6] | C | T | 5.094e-5 | 1 |
INTERGENIC
|
||
X | 15423013 | X_15423013_DEL [dm3] X_15528980_DEL [dm6] | AA | A | 5.095e-5 | 1 |
INTRON
Ac13E |
||
2L | 13414813 | 2L_13414813_SNP [dm3] 2L_13414813_SNP [dm6] | A | T | 5.113e-5 | 1 |
UPSTREAM
CG42784 & 2 others INTERGENIC |
||
3R | 26611380 | 3R_26611380_SNP [dm3] 3R_30785658_SNP [dm6] | C | T | 5.206e-5 | 1 |
SYNONYMOUS_CODING
zfh1 |
TF binding site
BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
|
|
X | 18404173 | X_18404173_SNP [dm3] X_18510140_SNP [dm6] | A | G | 5.236e-5 | 1 |
INTRON
Ggt-1 |
TF binding site
mE1_TFBS_cnc
|
|
2L | 4693730 | 2L_4693730_SNP [dm3] 2L_4693730_SNP [dm6] | G | T | 5.257e-5 | 1 |
UPSTREAM
CG34351 INTERGENIC |
||
X | 20880879 | X_20880879_SNP [dm3] X_21009852_SNP [dm6] | C | T | 5.374e-5 | 1 |
INTERGENIC
|
||
3R | 26062025 | 3R_26062025_SNP [dm3] 3R_30236303_SNP [dm6] | T | C | 5.478e-5 | 1 |
DOWNSTREAM
CG43448 INTERGENIC |
TF binding site
BDTNP1_TFBS_twi
|
|
3L | 20488173 | 3L_20488173_SNP [dm3] 3L_20495073_SNP [dm6] | C | T | 5.502e-5 | 1 |
UPSTREAM
CG6020 & 1 other INTRON CG6020 |
TF binding site
BDTNP1_TFBS_dl
|
|
2R | 13766342 | 2R_13766342_SNP [dm3] 2R_17878837_SNP [dm6] | T | A | 5.655e-5 | 1 |
NON_SYNONYMOUS_CODING
CG30325 INTRON Elk |
||
3L | 16230402 | 3L_16230402_SNP [dm3] 3L_16237302_SNP [dm6] | A | G | 5.682e-5 | 1 |
UPSTREAM
l_3_72Dr DOWNSTREAM l_3_72Dp INTERGENIC |
||
3L | 3395052 | 3L_3395052_DEL [dm3] 3L_3395052_DEL [dm6] | TCAAATAGCT | T | 5.692e-5 | 1 |
DOWNSTREAM
CR45737 INTERGENIC |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
|
|
2L | 14522480 | 2L_14522480_SNP [dm3] 2L_14522480_SNP [dm6] | A | T | 5.711e-5 | 1 |
INTERGENIC
|
||
3R | 7722229 | 3R_7722229_SNP [dm3] 3R_11896507_SNP [dm6] | C | T | 5.790e-5 | 1 |
SYNONYMOUS_CODING
Cad87A |
||
3R | 21965767 | 3R_21965767_DEL [dm3] 3R_26140045_DEL [dm6] | ACTCCTTGGCTTCCTCATCG... | A | 5.805e-5 | 1 |
INTERGENIC
|
||
3R | 7806766 | 3R_7806766_SNP [dm3] 3R_11981044_SNP [dm6] | G | A | 5.818e-5 | 1 |
SYNONYMOUS_CODING
CG12224 UPSTREAM CG18547 |
TF binding site
mE1_TFBS_chinmo mE1_TFBS_Trl
|
|
3R | 10589919 | 3R_10589919_DEL [dm3] 3R_14764197_DEL [dm6] | TT | T | 5.974e-5 | 1 |
INTRON
jvl |
||
X | 18660648 | X_18660648_DEL [dm3] X_18766615_DEL [dm6] | CGGAGA | C | 6.013e-5 | 1 |
INTRON
CCKLR-17D3 |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
|
|
3R | 14052857 | 3R_14052857_SNP [dm3] 3R_18227135_SNP [dm6] | T | C | 6.277e-5 | 1 |
INTRON
Mdh2 |
TF binding site
BDTNP1_TFBS_dl
|
|
2L | 3879599 | 2L_3879599_SNP [dm3] 2L_3879599_SNP [dm6] | A | C | 6.297e-5 | 1 |
INTRON
capu |
||
2R | 8385059 | 2R_8385059_SNP [dm3] 2R_12497554_SNP [dm6] | G | A | 6.304e-5 | 1 |
INTRON
fdl & 1 other |
TF binding site
mE1_TFBS_inv
|
|
2R | 5048819 | 2R_5048819_SNP [dm3] 2R_9161314_SNP [dm6] | A | G | 6.385e-5 | 1 |
UTR_5_PRIME
CG8008 UPSTREAM CR44283 DOWNSTREAM CG8046 |
TF binding site
mE1_TFBS_HSA mE1_TFBS_sens
|
|
3L | 16230461 | 3L_16230461_SNP [dm3] 3L_16237361_SNP [dm6] | T | A | 6.469e-5 | 1 |
UPSTREAM
l_3_72Dr DOWNSTREAM l_3_72Dp INTERGENIC |
||
2L | 13414816 | 2L_13414816_SNP [dm3] 2L_13414816_SNP [dm6] | T | C | 6.551e-5 | 1 |
UPSTREAM
CG42784 & 2 others INTERGENIC |
||
2R | 12629364 | 2R_12629364_SNP [dm3] 2R_16741859_SNP [dm6] | C | A | 6.630e-5 | 1 |
INTERGENIC
|
||
3L | 509283 | 3L_509283_INS [dm3] 3L_509283_INS [dm6] | G | GCACTGTGAACAAGCAG... | 6.751e-5 | 1 |
INTRON
klar |
TF binding site
BDTNP1_TFBS_twi mE1_TFBS_HSA
|