DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.504e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2613 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	27010374	3R_27010374_SNP [dm3] 3R_31184652_SNP [dm6]	T	C	1.141e^-6	0.688	SYNONYMOUS_CODING mesh
3L	5613631	3L_5613631_SNP [dm3] 3L_5620531_SNP [dm6]	C	T	1.208e^-6	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7017394	2L_7017394_SNP [dm3] 2L_7017394_SNP [dm6]	G	A	2.013e^-6	0.688	SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2495969	3R_2495969_SNP [dm3] 3R_6670247_SNP [dm6]	T	G	2.811e^-6	0.688	INTRON lab	regulatory region FlyBase REDfly_CRMs
2R	12806979	2R_12806979_SNP [dm3] 2R_16919474_SNP [dm6]	G	A	2.859e^-6	0.688	INTERGENIC
3L	6179603	3L_6179603_SNP [dm3] 3L_6186503_SNP [dm6]	G	A	3.000e^-6	0.688	SYNONYMOUS_CODING D19A DOWNSTREAM CG43293	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14366400	3L_14366400_SNP [dm3] 3L_14373300_SNP [dm6]	C	A	3.834e^-6	0.688	INTERGENIC
3L	5314708	3L_5314708_SNP [dm3] 3L_5321608_SNP [dm6]	A	G	4.112e^-6	0.688	INTERGENIC
X	20358965	X_20358965_SNP [dm3] X_20487938_SNP [dm6]	T	A	4.873e^-6	0.688	INTRON RhoGAP19D
2L	9251474	2L_9251474_SNP [dm3] 2L_9251474_SNP [dm6]	A	T	5.733e^-6	0.688	UTR_3_PRIME borr UPSTREAM aust & 1 other
3R	8706189	3R_8706189_SNP [dm3] 3R_12880467_SNP [dm6]	G	A	5.836e^-6	0.688	INTERGENIC
3L	21153922	3L_21153922_SNP [dm3] 3L_21160822_SNP [dm6]	C	T	6.259e^-6	0.688	UTR_5_PRIME Ac78C
3L	11233537	3L_11233537_SNP [dm3] 3L_11240437_SNP [dm6]	T	C	6.417e^-6	0.688	INTERGENIC
3L	18112600	3L_18112600_SNP [dm3] 3L_18119500_SNP [dm6]	C	T	7.406e^-6	0.688	DOWNSTREAM CG32195 INTRON CG7341	TF binding site mE1_TFBS_cad
2R	14795174	2R_14795174_SNP [dm3] 2R_18907669_SNP [dm6]	C	G	7.806e^-6	0.688	INTRON sano	TF binding site mE1_TFBS_cad
3L	9334938	3L_9334938_SNP [dm3] 3L_9341838_SNP [dm6]	T	A	8.622e^-6	0.688	INTRON PGRP-LC	TF binding site mE1_TFBS_HSA
3L	12001375	3L_12001375_SNP [dm3] 3L_12008275_SNP [dm6]	G	T	9.787e^-6	0.688	UTR_3_PRIME rols DOWNSTREAM CG6928
3R	22713569	3R_22713569_SNP [dm3] 3R_26887847_SNP [dm6]	T	C	1.148e^-5	0.688	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19022162	2R_19022162_SNP [dm3] 2R_23134639_SNP [dm6]	G	A	1.246e^-5	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	6795946	2R_6795946_SNP [dm3] 2R_10908441_SNP [dm6]	G	C	1.264e^-5	0.688	INTERGENIC
3L	21153942	3L_21153942_SNP [dm3] 3L_21160842_SNP [dm6]	A	T	1.280e^-5	0.688	UTR_5_PRIME Ac78C
3L	9332008	3L_9332008_SNP [dm3] 3L_9338908_SNP [dm6]	G	T	1.309e^-5	0.688	DOWNSTREAM PGRP-LA INTRON PGRP-LC
2L	1178728	2L_1178728_SNP [dm3] 2L_1178728_SNP [dm6]	G	T	1.326e^-5	0.688	INTRON CG4896	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7017383	2L_7017383_SNP [dm3] 2L_7017383_SNP [dm6]	G	A	1.334e^-5	0.688	SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27300122	3R_27300122_SNP [dm3] 3R_31474400_SNP [dm6]	A	T	1.367e^-5	0.688	DOWNSTREAM CR45555 INTERGENIC
2L	14094485	2L_14094485_SNP [dm3] 2L_14094485_SNP [dm6]	A	T	1.399e^-5	0.688	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7017404	2L_7017404_SNP [dm3] 2L_7017404_SNP [dm6]	C	G	1.436e^-5	0.688	NON_SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12189904	3R_12189904_SNP [dm3] 3R_16364182_SNP [dm6]	A	C	1.528e^-5	0.688	INTRON CG14880
3R	2350909	3R_2350909_SNP [dm3] 3R_6525187_SNP [dm6]	A	T	1.533e^-5	0.688	INTERGENIC
X	18642836	X_18642836_SNP [dm3] X_18748803_SNP [dm6]	T	G	1.591e^-5	0.688	UPSTREAM CG12609 INTERGENIC
2R	18573438	2R_18573438_DEL [dm3] 2R_22685933_DEL [dm6]	TATT	T	1.704e^-5	0.688	UTR_3_PRIME ppa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23625839	3R_23625839_SNP [dm3] 3R_27800117_SNP [dm6]	G	T	1.761e^-5	0.688	INTRON CG34353
2R	16774185	2R_16774185_SNP [dm3] 2R_20886680_SNP [dm6]	T	G	1.796e^-5	0.688	SYNONYMOUS_CODING otp
3L	20588872	3L_20588872_SNP [dm3] 3L_20595772_SNP [dm6]	A	G	1.800e^-5	0.688	INTERGENIC
2L	683988	2L_683988_SNP [dm3] 2L_683988_SNP [dm6]	G	T	1.806e^-5	0.688	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	683989	2L_683989_SNP [dm3] 2L_683989_SNP [dm6]	T	A	1.806e^-5	0.688	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25846387	3R_25846387_SNP [dm3] 3R_30020665_SNP [dm6]	A	T	1.848e^-5	0.688	INTRON Mgat2	TF binding site BDTNP1_TFBS_dl
3L	8074949	3L_8074949_SNP [dm3] 3L_8081849_SNP [dm6]	A	G	1.916e^-5	0.688	DOWNSTREAM CR43974 INTRON Ect4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	683994	2L_683994_SNP [dm3] 2L_683994_SNP [dm6]	G	A	1.947e^-5	0.688	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17972821	3R_17972821_SNP [dm3] 3R_22147099_SNP [dm6]	T	C	1.965e^-5	0.688	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3L	1898203	3L_1898203_SNP [dm3] 3L_1898203_SNP [dm6]	G	A	2.004e^-5	0.688	UPSTREAM CG1887 INTRON CG1887
3R	15764947	3R_15764947_SNP [dm3] 3R_19939225_SNP [dm6]	C	A	2.039e^-5	0.688	INTRON Hs6st
3R	21061664	3R_21061664_SNP [dm3] 3R_25235942_SNP [dm6]	G	A	2.046e^-5	0.688	UPSTREAM CG10420 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15764938	3R_15764938_SNP [dm3] 3R_19939216_SNP [dm6]	C	T	2.047e^-5	0.688	INTRON Hs6st
2L	21335199	2L_21335199_SNP [dm3] 2L_21335199_SNP [dm6]	T	C	2.050e^-5	0.688	INTRON dimm
3R	17972809	3R_17972809_SNP [dm3] 3R_22147087_SNP [dm6]	A	T	2.089e^-5	0.688	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	14532301	2R_14532301_SNP [dm3] 2R_18644796_SNP [dm6]	C	A	2.090e^-5	0.688	INTRON SP2637	TF binding site BDTNP1_TFBS_da
3L	1021517	3L_1021517_SNP [dm3] 3L_1021517_SNP [dm6]	A	T	2.122e^-5	0.688	INTRON trio
3L	21144250	3L_21144250_SNP [dm3] 3L_21151150_SNP [dm6]	G	T	2.123e^-5	0.688	UPSTREAM Ac78C INTRON Ac78C
3L	8986615	3L_8986615_SNP [dm3] 3L_8993515_SNP [dm6]	A	G	2.125e^-5	0.688	SYNONYMOUS_CODING smg	TF binding site mE1_TFBS_cad
2R	16774017	2R_16774017_SNP [dm3] 2R_20886512_SNP [dm6]	T	G	2.160e^-5	0.688	INTRON otp
3R	24657763	3R_24657763_SNP [dm3] 3R_28832041_SNP [dm6]	A	G	2.222e^-5	0.688	UPSTREAM WASp DOWNSTREAM Apc INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12504724	3L_12504724_SNP [dm3] 3L_12511624_SNP [dm6]	C	T	2.253e^-5	0.688	SYNONYMOUS_CODING sti
3R	2350925	3R_2350925_DEL [dm3] 3R_6525203_DEL [dm6]	GTG	AA	2.407e^-5	0.688	INTERGENIC
3L	18580888	3L_18580888_SNP [dm3] 3L_18587788_SNP [dm6]	C	G	2.462e^-5	0.688	UPSTREAM CG7271 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19022085	2R_19022085_SNP [dm3] 2R_23134562_SNP [dm6]	T	A	2.483e^-5	0.688	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17128919	2R_17128919_SNP [dm3] 2R_21241414_SNP [dm6]	A	G	2.560e^-5	0.688	INTRON ASPP
3R	26754631	3R_26754631_SNP [dm3] 3R_30928909_SNP [dm6]	A	C	2.575e^-5	0.688	INTRON Ptx1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	17972810	3R_17972810_SNP [dm3] 3R_22147088_SNP [dm6]	A	C	2.584e^-5	0.688	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad
X	15294540	X_15294540_SNP [dm3] X_15400507_SNP [dm6]	A	T	2.658e^-5	0.688	INTRON Cngl
2L	7626997	2L_7626997_SNP [dm3] 2L_7626997_SNP [dm6]	A	T	2.678e^-5	0.688	INTERGENIC
X	18636517	X_18636517_INS [dm3] X_18742484_INS [dm6]	A	ATTGCGA	2.745e^-5	0.688	INTERGENIC
3L	14109883	3L_14109883_SNP [dm3] 3L_14116783_SNP [dm6]	C	T	2.820e^-5	0.688	INTRON Sox21b
X	5725046	X_5725046_SNP [dm3] X_5831013_SNP [dm6]	A	T	2.866e^-5	0.688	DOWNSTREAM CR43264 INTRON CG15765
X	5725128	X_5725128_SNP [dm3] X_5831095_SNP [dm6]	G	C	2.866e^-5	0.688	DOWNSTREAM CR43264 INTRON CG15765
3R	17143883	3R_17143883_SNP [dm3] 3R_21318161_SNP [dm6]	T	A	2.920e^-5	0.688	DOWNSTREAM CG16791 & 1 other INTERGENIC
X	10459204	X_10459204_SNP [dm3] X_10565171_SNP [dm6]	T	A	2.964e^-5	0.688	DOWNSTREAM CG15296 INTRON spri
2L	2483881	2L_2483881_DEL [dm3] 2L_2483881_DEL [dm6]	ACACACA	A	2.998e^-5	0.688	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	21086869	3R_21086869_SNP [dm3] 3R_25261147_SNP [dm6]	A	T	3.031e^-5	0.688	UTR_3_PRIME CG10425 DOWNSTREAM CG11857
3L	12693301	3L_12693301_SNP [dm3] 3L_12700201_SNP [dm6]	G	A	3.142e^-5	0.688	INTRON mirr	TF binding site BDTNP1_TFBS_twi
2R	19022105	2R_19022105_SNP [dm3] 2R_23134582_SNP [dm6]	T	A	3.153e^-5	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	14447694	2R_14447694_SNP [dm3] 2R_18560189_SNP [dm6]	G	T	3.250e^-5	0.688	SYNONYMOUS_CODING GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14609240	2R_14609240_SNP [dm3] 2R_18721735_SNP [dm6]	C	A	3.289e^-5	0.688	INTRON Hs3st-A
3R	10012571	3R_10012571_SNP [dm3] 3R_14186849_SNP [dm6]	G	C	3.298e^-5	0.688	INTRON Dop1R1
3L	21057156	3L_21057156_SNP [dm3] 3L_21064056_SNP [dm6]	G	C	3.302e^-5	0.688	UTR_5_PRIME siz INTRON siz
2L	9250844	2L_9250844_SNP [dm3] 2L_9250844_SNP [dm6]	G	A	3.387e^-5	0.688	SYNONYMOUS_CODING aust DOWNSTREAM CR43734 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20588877	3L_20588877_SNP [dm3] 3L_20595777_SNP [dm6]	A	C	3.411e^-5	0.688	INTERGENIC
3R	27213948	3R_27213948_SNP [dm3] 3R_31388226_SNP [dm6]	G	A	3.564e^-5	0.688	INTRON CG1607	TF binding site mE1_TFBS_cad
2R	9741877	2R_9741877_SNP [dm3] 2R_13854372_SNP [dm6]	A	T	3.566e^-5	0.688	UPSTREAM CR44367 & 1 other DOWNSTREAM CG6553 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	5613313	3L_5613313_SNP [dm3] 3L_5620213_SNP [dm6]	A	C	3.601e^-5	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	21061701	3R_21061701_SNP [dm3] 3R_25235979_SNP [dm6]	A	G	3.655e^-5	0.688	UPSTREAM CG10420 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13056978	2L_13056978_SNP [dm3] 2L_13056978_SNP [dm6]	A	C	3.658e^-5	0.688	INTRON CG9932
2L	7902481	2L_7902481_SNP [dm3] 2L_7902481_SNP [dm6]	G	C	3.683e^-5	0.688	INTRON Snoo
3R	11159918	3R_11159918_SNP [dm3] 3R_15334196_SNP [dm6]	G	A	3.719e^-5	0.688	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	20359023	X_20359023_SNP [dm3] X_20487996_SNP [dm6]	G	C	3.818e^-5	0.688	INTRON RhoGAP19D
3R	24959269	3R_24959269_SNP [dm3] 3R_29133547_SNP [dm6]	C	T	3.819e^-5	0.688	INTRON Vha100-1
3L	11233539	3L_11233539_SNP [dm3] 3L_11240439_SNP [dm6]	A	G	3.875e^-5	0.688	INTERGENIC
2R	14439504	2R_14439504_SNP [dm3] 2R_18551999_SNP [dm6]	T	A	3.877e^-5	0.688	INTERGENIC
3R	19262866	3R_19262866_SNP [dm3] 3R_23437144_SNP [dm6]	G	A	3.916e^-5	0.688	INTRON CG4374
2L	4918222	2L_4918222_SNP [dm3] 2L_4918222_SNP [dm6]	T	C	3.918e^-5	0.688	INTRON hoe1
X	13055757	X_13055757_SNP [dm3] X_13161724_SNP [dm6]	G	T	4.015e^-5	0.688	UTR_3_PRIME CG12096 & 1 other DOWNSTREAM CG12096
X	15294627	X_15294627_SNP [dm3] X_15400594_SNP [dm6]	T	C	4.016e^-5	0.688	INTRON Cngl
2R	14609238	2R_14609238_SNP [dm3] 2R_18721733_SNP [dm6]	T	A	4.045e^-5	0.688	INTRON Hs3st-A
3L	6179646	3L_6179646_SNP [dm3] 3L_6186546_SNP [dm6]	C	T	4.135e^-5	0.688	SYNONYMOUS_CODING D19A DOWNSTREAM CG43293	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14520875	3R_14520875_SNP [dm3] 3R_18695153_SNP [dm6]	A	T	4.214e^-5	0.688	UPSTREAM CG34282 INTERGENIC
3L	5280751	3L_5280751_SNP [dm3] 3L_5287651_SNP [dm6]	A	T	4.302e^-5	0.688	INTERGENIC
X	7250110	X_7250110_INS [dm3] X_7356077_INS [dm6]	G	GC	4.304e^-5	0.688	INTRON CR44357 & 1 other
2L	14764504	2L_14764504_SNP [dm3] 2L_14764504_SNP [dm6]	C	A	4.321e^-5	0.688	DOWNSTREAM CSN1a INTERGENIC
2L	7901123	2L_7901123_SNP [dm3] 2L_7901123_SNP [dm6]	C	G	4.352e^-5	0.688	INTRON Snoo
2R	12284091	2R_12284091_SNP [dm3] 2R_16396586_SNP [dm6]	T	A	4.354e^-5	0.688	INTRON Sema-2b
3L	1379010	3L_1379010_SNP [dm3] 3L_1379010_SNP [dm6]	C	T	4.360e^-5	0.688	UPSTREAM tRNA:CR32330 INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	13671122	2R_13671122_SNP [dm3] 2R_17783617_SNP [dm6]	T	A	4.423e^-5	0.688	DOWNSTREAM mir-31a INTERGENIC
3R	22453593	3R_22453593_DEL [dm3] 3R_26627871_DEL [dm6]	AA	A	4.504e^-5	0.688	DOWNSTREAM TwdlK INTERGENIC
2L	10497668	2L_10497668_SNP [dm3] 2L_10497668_SNP [dm6]	T	C	4.584e^-5	0.688	INTRON Myo31DF
2L	13358773	2L_13358773_SNP [dm3] 2L_13358773_SNP [dm6]	T	A	4.759e^-5	0.688	INTERGENIC
2L	6289599	2L_6289599_SNP [dm3] 2L_6289599_SNP [dm6]	G	T	4.850e^-5	0.688	INTRON Ddr
3L	4217993	3L_4217993_SNP [dm3] 3L_4217993_SNP [dm6]	T	C	4.863e^-5	0.688	INTRON CG43367
2L	9251357	2L_9251357_SNP [dm3] 2L_9251357_SNP [dm6]	C	T	4.877e^-5	0.688	UPSTREAM aust DOWNSTREAM borr EXON CR43734
2L	1584841	2L_1584841_SNP [dm3] 2L_1584841_SNP [dm6]	T	C	4.878e^-5	0.688	DOWNSTREAM CG10869 INTRON haf
3L	20588902	3L_20588902_SNP [dm3] 3L_20595802_SNP [dm6]	T	G	4.879e^-5	0.688	INTERGENIC
3L	8644104	3L_8644104_SNP [dm3] 3L_8651004_SNP [dm6]	A	G	4.914e^-5	0.688	UTR_3_PRIME Pex7	TF binding site mE1_TFBS_cad
3L	18114189	3L_18114189_SNP [dm3] 3L_18121089_SNP [dm6]	A	G	4.958e^-5	0.688	NON_SYNONYMOUS_CODING CG42853 DOWNSTREAM CG7341
3L	7844526	3L_7844526_SNP [dm3] 3L_7851426_SNP [dm6]	G	A	5.028e^-5	0.688	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	9244577	2R_9244577_SNP [dm3] 2R_13357072_SNP [dm6]	C	T	5.035e^-5	0.688	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18580751	3L_18580751_SNP [dm3] 3L_18587651_SNP [dm6]	A	G	5.090e^-5	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26211177	3R_26211177_SNP [dm3] 3R_30385455_SNP [dm6]	T	A	5.103e^-5	0.688	DOWNSTREAM Fer1HCH INTERGENIC
3L	12162331	3L_12162331_SNP [dm3] 3L_12169231_SNP [dm6]	G	A	5.118e^-5	0.688	INTRON Rh7
2L	5564485	2L_5564485_INS [dm3] 2L_5564485_INS [dm6]	A	AA	5.159e^-5	0.688	DOWNSTREAM GluRIIB & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	6435388	2R_6435388_SNP [dm3] 2R_10547883_SNP [dm6]	T	A	5.194e^-5	0.688	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	17673148	3L_17673148_SNP [dm3] 3L_17680048_SNP [dm6]	A	C	5.231e^-5	0.688	INTRON CG34251
3R	19157164	3R_19157164_SNP [dm3] 3R_23331442_SNP [dm6]	G	T	5.308e^-5	0.688	INTRON pnt
3L	1021658	3L_1021658_SNP [dm3] 3L_1021658_SNP [dm6]	A	T	5.385e^-5	0.688	INTRON trio
3R	10078726	3R_10078726_SNP [dm3] 3R_14253004_SNP [dm6]	T	C	5.386e^-5	0.688	INTRON Aats-met
3L	10818741	3L_10818741_SNP [dm3] 3L_10825641_SNP [dm6]	A	T	5.418e^-5	0.688	DOWNSTREAM CR45246 INTERGENIC
3R	21061688	3R_21061688_SNP [dm3] 3R_25235966_SNP [dm6]	G	T	5.436e^-5	0.688	UPSTREAM CG10420 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21298190	3R_21298190_SNP [dm3] 3R_25472468_SNP [dm6]	A	G	5.455e^-5	0.688	INTRON Fur1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14109233	3L_14109233_DEL [dm3] 3L_14116133_DEL [dm6]	TT	T	5.536e^-5	0.688	INTRON Sox21b
2R	13669766	2R_13669766_SNP [dm3] 2R_17782261_SNP [dm6]	C	A	5.546e^-5	0.688	UPSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21845944	3R_21845944_SNP [dm3] 3R_26020222_SNP [dm6]	G	C	5.565e^-5	0.688	UPSTREAM CR43643 DOWNSTREAM CR43644 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5868684	3L_5868684_SNP [dm3] 3L_5875584_SNP [dm6]	G	A	5.571e^-5	0.688	DOWNSTREAM CG18586 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9142695	2L_9142695_SNP [dm3] 2L_9142695_SNP [dm6]	T	A	5.654e^-5	0.688	INTRON CG32982
3R	21854385	3R_21854385_SNP [dm3] 3R_26028663_SNP [dm6]	C	T	5.698e^-5	0.688	DOWNSTREAM E_spl_m5-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10974073	3L_10974073_SNP [dm3] 3L_10980973_SNP [dm6]	A	T	5.731e^-5	0.688	DOWNSTREAM klu INTERGENIC
2R	10288521	2R_10288521_SNP [dm3] 2R_14401016_SNP [dm6]	A	C	5.762e^-5	0.688	INTERGENIC
2R	12284362	2R_12284362_SNP [dm3] 2R_16396857_SNP [dm6]	C	G	5.839e^-5	0.688	INTRON Sema-2b
3L	18216758	3L_18216758_SNP [dm3] 3L_18223658_SNP [dm6]	T	G	5.864e^-5	0.688	INTERGENIC	TF binding site mE1_TFBS_inv
2R	16774009	2R_16774009_SNP [dm3] 2R_20886504_SNP [dm6]	G	T	5.991e^-5	0.688	INTRON otp
3L	10975902	3L_10975902_SNP [dm3] 3L_10982802_SNP [dm6]	A	G	6.046e^-5	0.688	SYNONYMOUS_CODING klu	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9309216	2R_9309216_SNP [dm3] 2R_13421711_SNP [dm6]	C	T	6.052e^-5	0.688	SPLICE_SITE_REGION CG42321 INTRON CG42321
2R	15796372	2R_15796372_SNP [dm3] 2R_19908867_SNP [dm6]	C	T	6.091e^-5	0.688	DOWNSTREAM CR44573 INTERGENIC
3L	21635065	3L_21635065_SNP [dm3] 3L_21641965_SNP [dm6]	T	A	6.112e^-5	0.688	INTRON Atox1
2R	16774013	2R_16774013_SNP [dm3] 2R_20886508_SNP [dm6]	C	A	6.124e^-5	0.688	INTRON otp
3L	10974804	3L_10974804_DEL [dm3] 3L_10981704_DEL [dm6]	AG	A	6.125e^-5	0.688	UTR_3_PRIME klu DOWNSTREAM klu
3L	1021678	3L_1021678_SNP [dm3] 3L_1021678_SNP [dm6]	T	C	6.210e^-5	0.688	INTRON trio
2R	19022104	2R_19022104_SNP [dm3] 2R_23134581_SNP [dm6]	A	T	6.247e^-5	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	19323097	2L_19323097_SNP [dm3] 2L_19323097_SNP [dm6]	T	A	6.281e^-5	0.688	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	8466923	3L_8466923_SNP [dm3] 3L_8473823_SNP [dm6]	A	G	6.302e^-5	0.688	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14658920	2R_14658920_SNP [dm3] 2R_18771415_SNP [dm6]	A	T	6.332e^-5	0.688	UPSTREAM Mctp INTRON Mctp
3R	16416524	3R_16416524_SNP [dm3] 3R_20590802_SNP [dm6]	G	T	6.353e^-5	0.688	DOWNSTREAM CG4159 INTRON Srp72	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26588078	3R_26588078_SNP [dm3] 3R_30762356_SNP [dm6]	C	T	6.367e^-5	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2R	13718522	2R_13718522_SNP [dm3] 2R_17831017_SNP [dm6]	C	T	6.444e^-5	0.688	SYNONYMOUS_CODING grh	TF binding site mE1_TFBS_cad
3R	24111216	3R_24111216_SNP [dm3] 3R_28285494_SNP [dm6]	G	T	6.540e^-5	0.688	DOWNSTREAM CG34437 INTERGENIC
3L	9365866	3L_9365866_SNP [dm3] 3L_9372766_SNP [dm6]	A	G	6.547e^-5	0.688	UTR_5_PRIME Hsp67Bb UPSTREAM Hsp22 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4611688	2L_4611688_SNP [dm3] 2L_4611688_SNP [dm6]	A	G	6.560e^-5	0.688	INTRON dp	TF binding site mE1_TFBS_kn
2R	13536013	2R_13536013_SNP [dm3] 2R_17648508_SNP [dm6]	T	A	6.569e^-5	0.688	INTRON CCHa1-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4551289	2L_4551289_SNP [dm3] 2L_4551289_SNP [dm6]	C	G	6.685e^-5	0.688	INTRON dp
3R	10080592	3R_10080592_SNP [dm3] 3R_14254870_SNP [dm6]	G	A	6.691e^-5	0.688	INTRON Aats-met
3L	10973350	3L_10973350_SNP [dm3] 3L_10980250_SNP [dm6]	G	A	6.711e^-5	0.688	DOWNSTREAM klu INTERGENIC
2L	14894555	2L_14894555_SNP [dm3] 2L_14894555_SNP [dm6]	T	C	6.755e^-5	0.688	INTERGENIC
3L	21162693	3L_21162693_SNP [dm3] 3L_21169593_SNP [dm6]	G	A	6.772e^-5	0.688	INTRON Ac78C
2R	12805670	2R_12805670_SNP [dm3] 2R_16918165_SNP [dm6]	C	G	6.773e^-5	0.688	INTERGENIC
3R	25520255	3R_25520255_SNP [dm3] 3R_29694533_SNP [dm6]	C	A	6.831e^-5	0.688	INTRON dmrt99B
3R	16673129	3R_16673129_SNP [dm3] 3R_20847407_SNP [dm6]	A	C	6.861e^-5	0.688	SYNONYMOUS_CODING CG15696	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5280711	3L_5280711_SNP [dm3] 3L_5287611_SNP [dm6]	T	G	6.881e^-5	0.688	INTERGENIC
3R	17168380	3R_17168380_SNP [dm3] 3R_21342658_SNP [dm6]	C	G	6.892e^-5	0.688	NON_SYNONYMOUS_CODING CG16791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	8519189	3L_8519189_SNP [dm3] 3L_8526089_SNP [dm6]	T	G	6.907e^-5	0.688	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	18572042	2R_18572042_SNP [dm3] 2R_22684537_SNP [dm6]	G	A	6.981e^-5	0.688	DOWNSTREAM ppa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	832259	3L_832259_SNP [dm3] 3L_832259_SNP [dm6]	A	G	6.990e^-5	0.688	SYNONYMOUS_CODING CG13900 UPSTREAM snoRNA:Psi18S-110 DOWNSTREAM snoRNA:Psi28S-3308 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	13054065	X_13054065_SNP [dm3] X_13160032_SNP [dm6]	C	G	7.063e^-5	0.688	NON_SYNONYMOUS_CODING CG12096 UPSTREAM Bap60	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	14967723	2R_14967723_SNP [dm3] 2R_19080218_SNP [dm6]	G	A	7.074e^-5	0.688	INTRON 5-HT1A
3L	5280721	3L_5280721_INS [dm3] 3L_5287621_INS [dm6]	A	AACA	7.138e^-5	0.688	INTERGENIC
3L	5280734	3L_5280734_SNP [dm3] 3L_5287634_SNP [dm6]	T	G	7.138e^-5	0.688	INTERGENIC
2R	10332281	2R_10332281_INS [dm3] 2R_14444776_INS [dm6]	C	CAATATTGTAC...	7.141e^-5	0.688	INTRON Oaz
3R	26210024	3R_26210024_SNP [dm3] 3R_30384302_SNP [dm6]	G	C	7.229e^-5	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
3R	27010338	3R_27010338_SNP [dm3] 3R_31184616_SNP [dm6]	A	G	7.234e^-5	0.688	SYNONYMOUS_CODING mesh
3R	23149909	3R_23149909_SNP [dm3] 3R_27324187_SNP [dm6]	G	A	7.238e^-5	0.688	INTERGENIC
3L	1042795	3L_1042795_SNP [dm3] 3L_1042795_SNP [dm6]	A	T	7.310e^-5	0.688	INTRON bab1
2R	16565953	2R_16565953_SNP [dm3] 2R_20678448_SNP [dm6]	G	A	7.313e^-5	0.688	INTERGENIC
X	10204066	X_10204066_SNP [dm3] X_10310033_SNP [dm6]	G	T	7.319e^-5	0.688	UPSTREAM alpha-Man-I INTRON alpha-Man-I
3L	5280746	3L_5280746_INS [dm3] 3L_5287646_INS [dm6]	A	AGA	7.369e^-5	0.688	INTERGENIC
3L	8006653	3L_8006653_SNP [dm3] 3L_8013553_SNP [dm6]	A	G	7.381e^-5	0.688	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	27009908	3R_27009908_DEL [dm3] 3R_31184186_DEL [dm6]	TGAGGTTGCTTGCC...	T	7.426e^-5	0.688	INTRON mesh
3L	12474390	3L_12474390_SNP [dm3] 3L_12481290_SNP [dm6]	C	A	7.463e^-5	0.688	INTRON CG10663
2L	11410638	2L_11410638_INS [dm3] 2L_11410638_INS [dm6]	A	AA	7.524e^-5	0.688	INTERGENIC	regulatory region REDfly_CRMs
3L	8006594	3L_8006594_SNP [dm3] 3L_8013494_SNP [dm6]	G	A	7.536e^-5	0.688	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	17938265	3R_17938265_SNP [dm3] 3R_22112543_SNP [dm6]	A	C	7.641e^-5	0.688	UPSTREAM Ir94a INTERGENIC
2R	13673835	2R_13673835_SNP [dm3] 2R_17786330_SNP [dm6]	G	T	7.649e^-5	0.688	NON_SYNONYMOUS_CODING aft
3R	10078809	3R_10078809_SNP [dm3] 3R_14253087_SNP [dm6]	A	G	7.742e^-5	0.688	INTRON Aats-met
2R	9442274	2R_9442274_SNP [dm3] 2R_13554769_SNP [dm6]	T	A	7.743e^-5	0.688	INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
X	6613900	X_6613900_SNP [dm3] X_6719867_SNP [dm6]	A	T	7.807e^-5	0.688	DOWNSTREAM CG3168 & 1 other INTERGENIC
3L	14730185	3L_14730185_SNP [dm3] 3L_14737085_SNP [dm6]	A	C	7.853e^-5	0.688	INTRON ome
3R	21966323	3R_21966323_SNP [dm3] 3R_26140601_SNP [dm6]	T	G	7.859e^-5	0.688	INTERGENIC
3L	14829519	3L_14829519_SNP [dm3] 3L_14836419_SNP [dm6]	C	T	7.878e^-5	0.688	INTRON CG17839
2R	10332207	2R_10332207_SNP [dm3] 2R_14444702_SNP [dm6]	C	A	7.921e^-5	0.688	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	18973287	2R_18973287_SNP [dm3] 2R_23085764_SNP [dm6]	T	G	7.940e^-5	0.688	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23234906	3R_23234906_SNP [dm3] 3R_27409184_SNP [dm6]	A	G	7.972e^-5	0.688	INTRON side
3L	7877628	3L_7877628_SNP [dm3] 3L_7884528_SNP [dm6]	T	C	7.980e^-5	0.688	INTRON CG32365
2R	12804957	2R_12804957_DEL [dm3] 2R_16917452_DEL [dm6]	TG	T	7.999e^-5	0.688	INTERGENIC	TF binding site mE1_TFBS_ftz_f1
3L	11233518	3L_11233518_INS [dm3] 3L_11240418_INS [dm6]	T	TC	8.272e^-5	0.688	INTERGENIC
3R	25106368	3R_25106368_SNP [dm3] 3R_29280646_SNP [dm6]	T	G	8.324e^-5	0.688	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21086792	3R_21086792_SNP [dm3] 3R_25261070_SNP [dm6]	A	C	8.345e^-5	0.688	UTR_3_PRIME CG10425 DOWNSTREAM CG11857
2R	10332263	2R_10332263_SNP [dm3] 2R_14444758_SNP [dm6]	C	T	8.427e^-5	0.688	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	4794149	X_4794149_SNP [dm3] X_4900116_SNP [dm6]	C	A	8.432e^-5	0.688	INTRON CG42594
3L	1022063	3L_1022063_SNP [dm3] 3L_1022063_SNP [dm6]	T	C	8.468e^-5	0.688	INTRON trio
2R	9438470	2R_9438470_SNP [dm3] 2R_13550965_SNP [dm6]	T	G	8.498e^-5	0.688	UTR_5_PRIME CG33156 UPSTREAM CG33156 INTRON CG33156
3R	2266130	3R_2266130_SNP [dm3] 3R_6440408_SNP [dm6]	T	C	8.548e^-5	0.688	SYNONYMOUS_CODING gpp	TF binding site mE1_TFBS_cad
3L	9288078	3L_9288078_SNP [dm3] 3L_9294978_SNP [dm6]	C	A	8.551e^-5	0.688	INTERGENIC
3L	7877829	3L_7877829_SNP [dm3] 3L_7884729_SNP [dm6]	G	A	8.592e^-5	0.688	INTRON CG32365
2R	14447076	2R_14447076_SNP [dm3] 2R_18559571_SNP [dm6]	T	C	8.598e^-5	0.688	SYNONYMOUS_CODING GEFmeso	TF binding site mE1_TFBS_chinmo
2R	10332234	2R_10332234_SNP [dm3] 2R_14444729_SNP [dm6]	G	T	8.721e^-5	0.688	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	13358850	2L_13358850_SNP [dm3] 2L_13358850_SNP [dm6]	G	T	8.724e^-5	0.688	INTERGENIC
3L	21152323	3L_21152323_SNP [dm3] 3L_21159223_SNP [dm6]	C	A	8.743e^-5	0.688	INTRON Ac78C	TF binding site mE1_TFBS_inv
2R	14543738	2R_14543738_SNP [dm3] 2R_18656233_SNP [dm6]	C	T	8.757e^-5	0.688	INTRON SP2637	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21335173	3L_21335173_SNP [dm3] 3L_21342073_SNP [dm6]	A	G	8.837e^-5	0.688	SYNONYMOUS_CODING CG7324
3L	13684643	3L_13684643_SNP [dm3] 3L_13691543_SNP [dm6]	G	T	8.849e^-5	0.688	INTRON bru-3
2R	2683796	2R_2683796_SNP [dm3] 2R_6796291_SNP [dm6]	T	C	8.878e^-5	0.688	INTRON Epac
2L	2618235	2L_2618235_SNP [dm3] 2L_2618235_SNP [dm6]	T	A	8.888e^-5	0.688	INTERGENIC
3R	24668741	3R_24668741_SNP [dm3] 3R_28843019_SNP [dm6]	G	C	8.906e^-5	0.688	UPSTREAM Apc INTRON Apc
2R	9438465	2R_9438465_SNP [dm3] 2R_13550960_SNP [dm6]	T	G	8.975e^-5	0.688	UTR_5_PRIME CG33156 UPSTREAM CG33156 INTRON CG33156
3L	9337874	3L_9337874_SNP [dm3] 3L_9344774_SNP [dm6]	A	G	9.015e^-5	0.688	INTRON PGRP-LC
3L	4481973	3L_4481973_SNP [dm3] 3L_4481973_SNP [dm6]	G	T	9.079e^-5	0.688	UPSTREAM CG11350 DOWNSTREAM CG7465 INTERGENIC
2R	10332210	2R_10332210_SNP [dm3] 2R_14444705_SNP [dm6]	G	A	9.102e^-5	0.688	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	2471129	3L_2471129_SNP [dm3] 3L_2471129_SNP [dm6]	T	G	9.135e^-5	0.688	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	18216746	3L_18216746_SNP [dm3] 3L_18223646_SNP [dm6]	G	T	9.191e^-5	0.688	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18216750	3L_18216750_SNP [dm3] 3L_18223650_SNP [dm6]	A	T	9.191e^-5	0.688	INTERGENIC	TF binding site mE1_TFBS_inv
3L	8074825	3L_8074825_SNP [dm3] 3L_8081725_SNP [dm6]	A	G	9.273e^-5	0.688	DOWNSTREAM CR43974 INTRON Ect4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20759542	X_20759542_SNP [dm3] X_20888515_SNP [dm6]	C	A	9.305e^-5	0.688	INTRON shakB
3L	9488190	3L_9488190_SNP [dm3] 3L_9495090_SNP [dm6]	C	T	9.306e^-5	0.688	UTR_3_PRIME path
2L	9856695	2L_9856695_SNP [dm3] 2L_9856695_SNP [dm6]	G	C	9.371e^-5	0.688	INTRON nAChRalpha6
3L	8379922	3L_8379922_SNP [dm3] 3L_8386822_SNP [dm6]	T	C	9.409e^-5	0.688	SYNONYMOUS_CODING ImpE1
2R	12284739	2R_12284739_SNP [dm3] 2R_16397234_SNP [dm6]	C	T	9.429e^-5	0.688	INTRON Sema-2b
2R	2683863	2R_2683863_SNP [dm3] 2R_6796358_SNP [dm6]	C	T	9.434e^-5	0.688	INTRON Epac
2L	2544999	2L_2544999_SNP [dm3] 2L_2544999_SNP [dm6]	G	A	9.488e^-5	0.688	INTERGENIC
3L	8006541	3L_8006541_SNP [dm3] 3L_8013441_SNP [dm6]	C	A	9.518e^-5	0.688	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	2515309	3R_2515309_SNP [dm3] 3R_6689587_SNP [dm6]	A	T	9.564e^-5	0.688	DOWNSTREAM Ccp84Af INTERGENIC
3R	16674220	3R_16674220_SNP [dm3] 3R_20848498_SNP [dm6]	G	T	9.579e^-5	0.688	DOWNSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3963620	2L_3963620_SNP [dm3] 2L_3963620_SNP [dm6]	G	C	9.623e^-5	0.688	INTRON fred	TF binding site mE1_TFBS_bab1
3R	21061980	3R_21061980_SNP [dm3] 3R_25236258_SNP [dm6]	A	G	9.654e^-5	0.688	UPSTREAM CG10420 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12504718	3L_12504718_SNP [dm3] 3L_12511618_SNP [dm6]	A	G	9.700e^-5	0.688	SYNONYMOUS_CODING sti
2R	10332175	2R_10332175_SNP [dm3] 2R_14444670_SNP [dm6]	G	C	9.767e^-5	0.688	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	10332193	2R_10332193_SNP [dm3] 2R_14444688_SNP [dm6]	T	A	9.767e^-5	0.688	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	10332235	2R_10332235_SNP [dm3] 2R_14444730_SNP [dm6]	T	C	9.767e^-5	0.688	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	10332237	2R_10332237_SNP [dm3] 2R_14444732_SNP [dm6]	T	C	9.767e^-5	0.688	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	10332250	2R_10332250_SNP [dm3] 2R_14444745_SNP [dm6]	C	T	9.767e^-5	0.688	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	26673115	3R_26673115_SNP [dm3] 3R_30847393_SNP [dm6]	C	A	9.823e^-5	0.688	INTERGENIC
3R	10150304	3R_10150304_SNP [dm3] 3R_14324582_SNP [dm6]	A	G	9.870e^-5	0.688	SYNONYMOUS_CODING Afti
3L	12140577	3L_12140577_SNP [dm3] 3L_12147477_SNP [dm6]	A	T	9.992e^-5	0.688	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2R	20051463	2R_20051463_SNP [dm3] 2R_24163940_SNP [dm6]	G	C	1.000e^-4	0.688	INTRON CG3328	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17973005	3R_17973005_SNP [dm3] 3R_22147283_SNP [dm6]	G	C	1.001e^-4	0.688	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	2683849	2R_2683849_SNP [dm3] 2R_6796344_SNP [dm6]	T	A	1.002e^-4	0.688	INTRON Epac
2R	12336043	2R_12336043_SNP [dm3] 2R_16448538_SNP [dm6]	C	A	1.007e^-4	0.688	INTERGENIC
3L	2471118	3L_2471118_INS [dm3] 3L_2471118_INS [dm6]	T	TT	1.013e^-4	0.688	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	14755962	X_14755962_SNP [dm3] X_14861929_SNP [dm6]	A	G	1.017e^-4	0.688	INTRON Flo2
2R	14555004	2R_14555004_SNP [dm3] 2R_18667499_SNP [dm6]	G	T	1.023e^-4	0.688	DOWNSTREAM edl INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18216755	3L_18216755_SNP [dm3] 3L_18223655_SNP [dm6]	T	C	1.026e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_inv
X	9013159	X_9013159_SNP [dm3] X_9119126_SNP [dm6]	C	A	1.026e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10459130	X_10459130_SNP [dm3] X_10565097_SNP [dm6]	G	A	1.027e^-4	0.688	DOWNSTREAM CG15296 INTRON spri
2R	13955109	2R_13955109_SNP [dm3] 2R_18067604_SNP [dm6]	G	C	1.030e^-4	0.688	INTRON CG34386
2R	10332200	2R_10332200_SNP [dm3] 2R_14444695_SNP [dm6]	G	T	1.032e^-4	0.688	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	7144350	X_7144350_SNP [dm3] X_7250317_SNP [dm6]	G	A	1.035e^-4	0.688	INTRON CR44357
3L	17190123	3L_17190123_SNP [dm3] 3L_17197023_SNP [dm6]	T	C	1.035e^-4	0.688	INTRON Rbp6
2R	14439510	2R_14439510_SNP [dm3] 2R_18552005_SNP [dm6]	T	C	1.036e^-4	0.688	INTERGENIC
2R	10332244	2R_10332244_SNP [dm3] 2R_14444739_SNP [dm6]	T	G	1.038e^-4	0.688	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	18711937	3R_18711937_SNP [dm3] 3R_22886215_SNP [dm6]	G	A	1.041e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	3840102	2R_3840102_SNP [dm3] 2R_7952597_SNP [dm6]	C	A	1.042e^-4	0.688	INTRON CG14764
2L	2639440	2L_2639440_SNP [dm3] 2L_2639440_SNP [dm6]	C	T	1.043e^-4	0.688	INTERGENIC
2L	8837684	2L_8837684_SNP [dm3] 2L_8837684_SNP [dm6]	G	A	1.047e^-4	0.688	INTERGENIC
2R	10332232	2R_10332232_SNP [dm3] 2R_14444727_SNP [dm6]	G	C	1.048e^-4	0.688	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	26679969	3R_26679969_SNP [dm3] 3R_30854247_SNP [dm6]	C	G	1.051e^-4	0.688	UTR_3_PRIME tll	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10332173	2R_10332173_SNP [dm3] 2R_14444668_SNP [dm6]	A	G	1.053e^-4	0.688	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	10089310	3L_10089310_SNP [dm3] 3L_10096210_SNP [dm6]	G	A	1.057e^-4	0.688	SYNONYMOUS_CODING CG42825 INTRON dpr6
2R	10332261	2R_10332261_SNP [dm3] 2R_14444756_SNP [dm6]	T	A	1.061e^-4	0.688	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	14894747	2L_14894747_SNP [dm3] 2L_14894747_SNP [dm6]	C	T	1.063e^-4	0.688	INTERGENIC
2R	9746892	2R_9746892_SNP [dm3] 2R_13859387_SNP [dm6]	C	T	1.066e^-4	0.688	SYNONYMOUS_CODING Uba3 UPSTREAM tum DOWNSTREAM CG16935	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9251150	3L_9251150_SNP [dm3] 3L_9258050_SNP [dm6]	A	G	1.074e^-4	0.688	INTRON GluRIB
2R	14999353	2R_14999353_SNP [dm3] 2R_19111848_SNP [dm6]	T	C	1.074e^-4	0.688	INTRON 5-HT1A	TF binding site BDTNP1_TFBS_twi
3R	5733099	3R_5733099_SNP [dm3] 3R_9907377_SNP [dm6]	C	A	1.075e^-4	0.688	INTRON Glut4EF
3L	9568285	3L_9568285_SNP [dm3] 3L_9575185_SNP [dm6]	A	T	1.081e^-4	0.688	INTRON CG42673
X	20341570	X_20341570_SNP [dm3] X_20470543_SNP [dm6]	C	A	1.082e^-4	0.688	UTR_3_PRIME RhoGAP19D DOWNSTREAM GstT3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4632323	3L_4632323_SNP [dm3] 3L_4632323_SNP [dm6]	A	G	1.084e^-4	0.688	INTRON axo
3R	2549474	3R_2549474_SNP [dm3] 3R_6723752_SNP [dm6]	G	C	1.085e^-4	0.688	INTRON pb	enhancer mE1_CBP_Enhancers regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	9251347	2L_9251347_SNP [dm3] 2L_9251347_SNP [dm6]	G	A	1.086e^-4	0.688	UPSTREAM aust DOWNSTREAM borr EXON CR43734
3L	10303393	3L_10303393_SNP [dm3] 3L_10310293_SNP [dm6]	G	C	1.087e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15294622	X_15294622_SNP [dm3] X_15400589_SNP [dm6]	C	A	1.097e^-4	0.688	INTRON Cngl
X	15294628	X_15294628_SNP [dm3] X_15400595_SNP [dm6]	A	G	1.097e^-4	0.688	INTRON Cngl
2L	5522530	2L_5522530_SNP [dm3] 2L_5522530_SNP [dm6]	T	C	1.108e^-4	0.688	SYNONYMOUS_CODING CG7371
3L	22355457	3L_22355457_SNP [dm3] 3L_22362357_SNP [dm6]	C	T	1.112e^-4	0.688	INTRON Ten-m
3L	2398289	3L_2398289_SNP [dm3] 3L_2398289_SNP [dm6]	T	C	1.116e^-4	0.688	INTRON CG45186	TF binding site mE1_TFBS_inv
3L	19214909	3L_19214909_SNP [dm3] 3L_19221809_SNP [dm6]	G	T	1.121e^-4	0.688	INTRON fz2
X	13055130	X_13055130_SNP [dm3] X_13161097_SNP [dm6]	G	T	1.123e^-4	0.688	NON_SYNONYMOUS_CODING CG12096 DOWNSTREAM CG34411	TF binding site mE1_TFBS_sens
3R	18114955	3R_18114955_DEL [dm3] 3R_22289233_DEL [dm6]	TTTCCTTTG	AC	1.123e^-4	0.688	INTRON SKIP
X	20356753	X_20356753_SNP [dm3] X_20485726_SNP [dm6]	A	T	1.130e^-4	0.688	UPSTREAM CG15461 INTRON RhoGAP19D
2L	1580870	2L_1580870_SNP [dm3] 2L_1580870_SNP [dm6]	T	A	1.133e^-4	0.688	INTRON haf
3R	21833604	3R_21833604_SNP [dm3] 3R_26007882_SNP [dm6]	T	C	1.136e^-4	0.688	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	21822385	2L_21822385_SNP [dm3] 2L_21822385_SNP [dm6]	C	A	1.138e^-4	0.688	DOWNSTREAM CR44786 INTERGENIC
2R	2569173	2R_2569173_SNP [dm3] 2R_6681668_SNP [dm6]	T	C	1.143e^-4	0.688	UPSTREAM CR44164 DOWNSTREAM CR44165 INTRON CG9422	TF binding site mE1_TFBS_HSA
3R	15428344	3R_15428344_DEL [dm3] 3R_19602622_DEL [dm6]	TGGCTGAGAACACTGAGACT...	T	1.147e^-4	0.688	UTR_3_PRIME CG7333 UPSTREAM CG7342 DOWNSTREAM CG7333 INTRAGENIC CG7333 INTERGENIC
3L	2471111	3L_2471111_SNP [dm3] 3L_2471111_SNP [dm6]	T	G	1.159e^-4	0.688	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	23800205	3R_23800205_SNP [dm3] 3R_27974483_SNP [dm6]	A	G	1.166e^-4	0.688	INTRON betaTub97EF
3R	17742637	3R_17742637_SNP [dm3] 3R_21916915_SNP [dm6]	G	T	1.169e^-4	0.688	INTERGENIC
3L	21199429	3L_21199429_SNP [dm3] 3L_21206329_SNP [dm6]	T	C	1.171e^-4	0.688	SYNONYMOUS_CODING CG10512	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4688569	X_4688569_DEL [dm3] X_4794536_DEL [dm6]	GT	G	1.176e^-4	0.688	INTERGENIC
2R	10332198	2R_10332198_SNP [dm3] 2R_14444693_SNP [dm6]	G	T	1.178e^-4	0.688	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	6637146	3L_6637146_DEL [dm3] 3L_6644046_DEL [dm6]	ATA	A	1.179e^-4	0.688	INTERGENIC
X	14755979	X_14755979_SNP [dm3] X_14861946_SNP [dm6]	G	C	1.180e^-4	0.688	INTRON Flo2
X	14755982	X_14755982_SNP [dm3] X_14861949_SNP [dm6]	T	C	1.180e^-4	0.688	INTRON Flo2
2R	16339274	2R_16339274_SNP [dm3] 2R_20451769_SNP [dm6]	A	G	1.193e^-4	0.688	INTRON CG12484
3L	13838080	3L_13838080_SNP [dm3] 3L_13844980_SNP [dm6]	C	T	1.195e^-4	0.688	SYNONYMOUS_CODING Tsp68C	TF binding site mE1_TFBS_bab1
3L	2471106	3L_2471106_SNP [dm3] 3L_2471106_SNP [dm6]	T	C	1.195e^-4	0.688	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	2471158	3L_2471158_SNP [dm3] 3L_2471158_SNP [dm6]	T	A	1.195e^-4	0.688	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	18643254	X_18643254_SNP [dm3] X_18749221_SNP [dm6]	T	C	1.196e^-4	0.688	UPSTREAM CG12609 INTERGENIC
2R	10332247	2R_10332247_SNP [dm3] 2R_14444742_SNP [dm6]	G	T	1.198e^-4	0.688	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	9442453	2R_9442453_SNP [dm3] 2R_13554948_SNP [dm6]	T	A	1.199e^-4	0.688	INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	12806930	2R_12806930_SNP [dm3] 2R_16919425_SNP [dm6]	A	C	1.206e^-4	0.688	INTERGENIC
3R	25754683	3R_25754683_SNP [dm3] 3R_29928961_SNP [dm6]	C	T	1.215e^-4	0.688	NON_SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522
3R	9229809	3R_9229809_SNP [dm3] 3R_13404087_SNP [dm6]	T	A	1.216e^-4	0.688	NON_SYNONYMOUS_CODING yellow-e3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	13826368	X_13826368_SNP [dm3] X_13932335_SNP [dm6]	C	A	1.217e^-4	0.688	INTRON mamo
3R	12190078	3R_12190078_DEL [dm3] 3R_16364356_DEL [dm6]	AACAT	G	1.222e^-4	0.688	INTRON CG14880
X	8431643	X_8431643_SNP [dm3] X_8537610_SNP [dm6]	G	A	1.226e^-4	0.688	INTRON Nrg
3R	26658393	3R_26658393_DEL [dm3] 3R_30832671_DEL [dm6]	AATATCTATAGA...	G	1.227e^-4	0.688	INTRON CG15544
3R	22711039	3R_22711039_SNP [dm3] 3R_26885317_SNP [dm6]	G	C	1.227e^-4	0.688	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9290391	3R_9290391_SNP [dm3] 3R_13464669_SNP [dm6]	T	C	1.229e^-4	0.688	UPSTREAM mir-252 DOWNSTREAM CG14372 INTRON CR17025
X	18206562	X_18206562_DEL [dm3] X_18312529_DEL [dm6]	CCATTCT	C	1.230e^-4	0.688	UPSTREAM CR45609 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9442450	2R_9442450_SNP [dm3] 2R_13554945_SNP [dm6]	C	T	1.232e^-4	0.688	INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	16774006	2R_16774006_SNP [dm3] 2R_20886501_SNP [dm6]	C	A	1.232e^-4	0.688	INTRON otp
3R	8543987	3R_8543987_SNP [dm3] 3R_12718265_SNP [dm6]	G	A	1.235e^-4	0.688	INTRON Men
2L	6303995	2L_6303995_SNP [dm3] 2L_6303995_SNP [dm6]	G	A	1.236e^-4	0.688	INTRON Ddr
3L	10976619	3L_10976619_SNP [dm3] 3L_10983519_SNP [dm6]	C	G	1.237e^-4	0.688	SYNONYMOUS_CODING klu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12859033	3L_12859033_SNP [dm3] 3L_12865933_SNP [dm6]	A	C	1.239e^-4	0.688	INTERGENIC
3R	19944972	3R_19944972_SNP [dm3] 3R_24119250_SNP [dm6]	A	T	1.242e^-4	0.688	INTRON Rootletin
3L	6025680	3L_6025680_SNP [dm3] 3L_6032580_SNP [dm6]	A	C	1.247e^-4	0.688	DOWNSTREAM CG10477 INTERGENIC
3R	9869069	3R_9869069_SNP [dm3] 3R_14043347_SNP [dm6]	A	C	1.270e^-4	0.688	INTERGENIC
X	18206951	X_18206951_SNP [dm3] X_18312918_SNP [dm6]	G	T	1.272e^-4	0.688	UPSTREAM CR45609 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	9442437	2R_9442437_SNP [dm3] 2R_13554932_SNP [dm6]	A	C	1.273e^-4	0.688	INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
X	18644580	X_18644580_SNP [dm3] X_18750547_SNP [dm6]	G	A	1.273e^-4	0.688	INTERGENIC
2L	1580549	2L_1580549_SNP [dm3] 2L_1580549_SNP [dm6]	A	C	1.274e^-4	0.688	INTRON haf
3L	21232133	3L_21232133_SNP [dm3] 3L_21239033_SNP [dm6]	T	A	1.285e^-4	0.688	INTRON Eip78C	TF binding site mE1_TFBS_cad
3L	11108332	3L_11108332_SNP [dm3] 3L_11115232_SNP [dm6]	C	T	1.288e^-4	0.688	SYNONYMOUS_CODING fd68A
2L	12586507	2L_12586507_SNP [dm3] 2L_12586507_SNP [dm6]	G	A	1.293e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	15670940	3L_15670940_SNP [dm3] 3L_15677840_SNP [dm6]	G	A	1.295e^-4	0.688	INTERGENIC
3R	19157171	3R_19157171_SNP [dm3] 3R_23331449_SNP [dm6]	A	C	1.299e^-4	0.688	INTRON pnt
2R	14406515	2R_14406515_SNP [dm3] 2R_18519010_SNP [dm6]	T	C	1.299e^-4	0.688	INTRON CG43066	TF binding site mE1_TFBS_inv
2R	17419139	2R_17419139_SNP [dm3] 2R_21531634_SNP [dm6]	T	A	1.306e^-4	0.688	INTRON Egfr EXON CR44725
3R	21094610	3R_21094610_SNP [dm3] 3R_25268888_SNP [dm6]	C	A	1.308e^-4	0.688	DOWNSTREAM CR43310 INTRON CR45214 EXON CR13656
3R	25754562	3R_25754562_SNP [dm3] 3R_29928840_SNP [dm6]	A	G	1.315e^-4	0.688	NON_SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522	TF binding site mE1_TFBS_chinmo
3R	2266228	3R_2266228_SNP [dm3] 3R_6440506_SNP [dm6]	C	T	1.320e^-4	0.688	SYNONYMOUS_CODING gpp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	21845201	3R_21845201_SNP [dm3] 3R_26019479_SNP [dm6]	A	T	1.321e^-4	0.688	UPSTREAM CR43643 DOWNSTREAM CR43644 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	20936118	3R_20936118_SNP [dm3] 3R_25110396_SNP [dm6]	C	T	1.322e^-4	0.688	INTRON CG13650
3R	24668737	3R_24668737_SNP [dm3] 3R_28843015_SNP [dm6]	A	G	1.322e^-4	0.688	UPSTREAM Apc INTRON Apc
2L	14771116	2L_14771116_SNP [dm3] 2L_14771116_SNP [dm6]	G	A	1.328e^-4	0.688	INTERGENIC
3R	22602413	3R_22602413_SNP [dm3] 3R_26776691_SNP [dm6]	C	T	1.339e^-4	0.688	INTERGENIC
2R	10736136	2R_10736136_SNP [dm3] 2R_14848631_SNP [dm6]	T	A	1.341e^-4	0.688	UTR_3_PRIME SMC2 UPSTREAM CG10209	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2513771	3L_2513771_SNP [dm3] 3L_2513771_SNP [dm6]	A	G	1.345e^-4	0.688	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7596753	3L_7596753_INS [dm3] 3L_7603653_INS [dm6]	T	TT	1.349e^-4	0.688	INTRON CG33275
3R	25754645	3R_25754645_SNP [dm3] 3R_29928923_SNP [dm6]	A	G	1.355e^-4	0.688	SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522
3R	25161746	3R_25161746_SNP [dm3] 3R_29336024_SNP [dm6]	C	T	1.360e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9487386	3L_9487386_SNP [dm3] 3L_9494286_SNP [dm6]	G	C	1.364e^-4	0.688	DOWNSTREAM path INTERGENIC
X	4688202	X_4688202_SNP [dm3] X_4794169_SNP [dm6]	T	C	1.371e^-4	0.688	INTERGENIC
3L	20784129	3L_20784129_SNP [dm3] 3L_20791029_SNP [dm6]	C	A	1.372e^-4	0.688	SYNONYMOUS_CODING Six4
X	19728013	X_19728013_SNP [dm3] X_19833980_SNP [dm6]	G	A	1.375e^-4	0.688	SYNONYMOUS_CODING pico	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2486328	2L_2486328_SNP [dm3] 2L_2486328_SNP [dm6]	G	A	1.376e^-4	0.688	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2R	10332255	2R_10332255_SNP [dm3] 2R_14444750_SNP [dm6]	A	G	1.378e^-4	0.688	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	5960690	X_5960690_SNP [dm3] X_6066657_SNP [dm6]	A	T	1.380e^-4	0.688	UPSTREAM CG43115 INTERGENIC
2L	16008401	2L_16008401_SNP [dm3] 2L_16008401_SNP [dm6]	C	T	1.387e^-4	0.688	INTRON beat-Ic	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16065812	3R_16065812_SNP [dm3] 3R_20240090_SNP [dm6]	C	T	1.388e^-4	0.688	INTRON Nlg4
2R	10736058	2R_10736058_SNP [dm3] 2R_14848553_SNP [dm6]	C	T	1.390e^-4	0.688	UPSTREAM CG10209 DOWNSTREAM SMC2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4218088	3L_4218088_SNP [dm3] 3L_4218088_SNP [dm6]	T	C	1.390e^-4	0.688	SYNONYMOUS_CODING CG43367
2L	1579909	2L_1579909_SNP [dm3] 2L_1579909_SNP [dm6]	C	G	1.392e^-4	0.688	INTRON haf
3R	27011029	3R_27011029_SNP [dm3] 3R_31185307_SNP [dm6]	C	T	1.393e^-4	0.688	INTRON mesh
2R	14180042	2R_14180042_SNP [dm3] 2R_18292537_SNP [dm6]	C	T	1.394e^-4	0.688	START_GAINED CG14502 UTR_5_PRIME CG14502 INTRON CG14502 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	11159975	3R_11159975_SNP [dm3] 3R_15334253_SNP [dm6]	A	G	1.395e^-4	0.688	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	10332169	2R_10332169_SNP [dm3] 2R_14444664_SNP [dm6]	C	T	1.404e^-4	0.688	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	10803971	3L_10803971_SNP [dm3] 3L_10810871_SNP [dm6]	A	C	1.406e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15308095	2R_15308095_SNP [dm3] 2R_19420590_SNP [dm6]	C	A	1.407e^-4	0.688	INTRON hts	TF binding site BDTNP1_TFBS_dl
X	22004332	X_22004332_SNP [dm3] X_22602496_SNP [dm6]	C	A	1.408e^-4	0.688	INTRON Cda4	transposable element FlyBase
X	20364785	X_20364785_SNP [dm3] X_20493758_SNP [dm6]	C	T	1.412e^-4	0.688	INTRON RhoGAP19D
2R	11409826	2R_11409826_SNP [dm3] 2R_15522321_SNP [dm6]	T	A	1.413e^-4	0.688	INTRON Khc-73
X	22004377	X_22004377_SNP [dm3] X_22602541_SNP [dm6]	A	C	1.416e^-4	0.688	INTRON Cda4
2R	12804971	2R_12804971_SNP [dm3] 2R_16917466_SNP [dm6]	A	T	1.418e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_ftz_f1
X	20364780	X_20364780_SNP [dm3] X_20493753_SNP [dm6]	T	G	1.419e^-4	0.688	INTRON RhoGAP19D
3R	24666916	3R_24666916_SNP [dm3] 3R_28841194_SNP [dm6]	T	C	1.420e^-4	0.688	INTRON Apc
2L	905217	2L_905217_SNP [dm3] 2L_905217_SNP [dm6]	C	T	1.421e^-4	0.688	DOWNSTREAM CR45261 INTERGENIC
3L	21096661	3L_21096661_SNP [dm3] 3L_21103561_SNP [dm6]	T	C	1.426e^-4	0.688	INTRON ko	regulatory region REDfly_CRMs
3R	23828122	3R_23828122_SNP [dm3] 3R_28002400_SNP [dm6]	C	G	1.432e^-4	0.688	INTERGENIC
3R	21083395	3R_21083395_SNP [dm3] 3R_25257673_SNP [dm6]	C	A	1.432e^-4	0.688	NON_SYNONYMOUS_CODING Nup358	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12285444	2R_12285444_SNP [dm3] 2R_16397939_SNP [dm6]	G	A	1.433e^-4	0.688	UPSTREAM Sema-2b INTRON Sema-2b
2L	1234517	2L_1234517_SNP [dm3] 2L_1234517_SNP [dm6]	G	A	1.439e^-4	0.688	INTERGENIC
X	20341562	X_20341562_DEL [dm3] X_20470535_DEL [dm6]	TG	T	1.441e^-4	0.688	UTR_3_PRIME RhoGAP19D DOWNSTREAM GstT3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16267112	3L_16267112_SNP [dm3] 3L_16274012_SNP [dm6]	T	C	1.443e^-4	0.688	DOWNSTREAM CG13066 INTERGENIC
X	14755952	X_14755952_SNP [dm3] X_14861919_SNP [dm6]	G	C	1.460e^-4	0.688	INTRON Flo2
3L	11110566	3L_11110566_SNP [dm3] 3L_11117466_SNP [dm6]	G	A	1.463e^-4	0.688	SYNONYMOUS_CODING fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14923389	2R_14923389_SNP [dm3] 2R_19035884_SNP [dm6]	G	A	1.464e^-4	0.688	SYNONYMOUS_CODING CG15115
X	12371580	X_12371580_SNP [dm3] X_12477547_SNP [dm6]	C	G	1.465e^-4	0.688	UTR_3_PRIME CG42258 DOWNSTREAM CG42258
3L	8382529	3L_8382529_SNP [dm3] 3L_8389429_SNP [dm6]	T	C	1.467e^-4	0.688	SYNONYMOUS_CODING ImpE1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	20759561	X_20759561_SNP [dm3] X_20888534_SNP [dm6]	T	G	1.469e^-4	0.688	INTRON shakB
2L	4567296	2L_4567296_SNP [dm3] 2L_4567296_SNP [dm6]	C	T	1.471e^-4	0.688	INTRON dp
3L	19468103	3L_19468103_SNP [dm3] 3L_19475003_SNP [dm6]	A	G	1.472e^-4	0.688	UPSTREAM CG32213 DOWNSTREAM CG18294 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	21137202	3L_21137202_SNP [dm3] 3L_21144102_SNP [dm6]	C	A	1.476e^-4	0.688	INTRON Ac78C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8994739	3L_8994739_SNP [dm3] 3L_9001639_SNP [dm6]	G	A	1.477e^-4	0.688	SYNONYMOUS_CODING CG5087	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3L	10421468	3L_10421468_SNP [dm3] 3L_10428368_SNP [dm6]	C	T	1.489e^-4	0.688	INTERGENIC
3L	1898360	3L_1898360_SNP [dm3] 3L_1898360_SNP [dm6]	C	T	1.489e^-4	0.688	UPSTREAM CG1887 INTRON CG1887
3L	4713901	3L_4713901_SNP [dm3] 3L_4713901_SNP [dm6]	A	C	1.491e^-4	0.688	INTRON RhoGEF64C
3R	18114871	3R_18114871_SNP [dm3] 3R_22289149_SNP [dm6]	C	T	1.508e^-4	0.688	INTRON SKIP
3L	5527299	3L_5527299_SNP [dm3] 3L_5534199_SNP [dm6]	A	C	1.515e^-4	0.688	UTR_3_PRIME CG13285 DOWNSTREAM CG13285
3L	18216753	3L_18216753_SNP [dm3] 3L_18223653_SNP [dm6]	C	A	1.519e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_inv
3R	24675106	3R_24675106_SNP [dm3] 3R_28849384_SNP [dm6]	T	C	1.523e^-4	0.688	INTRON spg
3R	25309025	3R_25309025_SNP [dm3] 3R_29483303_SNP [dm6]	A	G	1.538e^-4	0.688	SYNONYMOUS_CODING Ptp99A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6922439	2R_6922439_SNP [dm3] 2R_11034934_SNP [dm6]	T	G	1.541e^-4	0.688	INTRON luna	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2337300	3L_2337300_SNP [dm3] 3L_2337300_SNP [dm6]	C	A	1.541e^-4	0.688	INTRON MsR1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	10341070	3L_10341070_SNP [dm3] 3L_10347970_SNP [dm6]	C	G	1.545e^-4	0.688	UPSTREAM CR44327 INTERGENIC
3L	5613373	3L_5613373_SNP [dm3] 3L_5620273_SNP [dm6]	G	C	1.556e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	8550008	X_8550008_SNP [dm3] X_8655975_SNP [dm6]	G	A	1.561e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18216713	3L_18216713_SNP [dm3] 3L_18223613_SNP [dm6]	A	G	1.561e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9366435	3L_9366435_SNP [dm3] 3L_9373335_SNP [dm6]	T	G	1.567e^-4	0.688	UPSTREAM Hsp67Bc & 1 other INTRON Hsp22 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	7596387	3L_7596387_SNP [dm3] 3L_7603287_SNP [dm6]	C	G	1.579e^-4	0.688	NON_SYNONYMOUS_CODING CG33275
2L	7900235	2L_7900235_SNP [dm3] 2L_7900235_SNP [dm6]	C	G	1.580e^-4	0.688	INTRON Snoo
X	7250114	X_7250114_SNP [dm3] X_7356081_SNP [dm6]	G	A	1.583e^-4	0.688	INTRON CR44357 & 1 other
X	7250865	X_7250865_SNP [dm3] X_7356832_SNP [dm6]	C	T	1.590e^-4	0.688	INTRON CR44357 & 1 other
3R	12096140	3R_12096140_SNP [dm3] 3R_16270418_SNP [dm6]	T	C	1.598e^-4	0.688	SYNONYMOUS_CODING Mat89Ba
3L	4217734	3L_4217734_SNP [dm3] 3L_4217734_SNP [dm6]	T	C	1.600e^-4	0.688	SYNONYMOUS_CODING CG43367
2R	14397420	2R_14397420_SNP [dm3] 2R_18509915_SNP [dm6]	G	T	1.614e^-4	0.688	INTERGENIC
3R	20433872	3R_20433872_DEL [dm3] 3R_24608150_DEL [dm6]	AA	A	1.629e^-4	0.688	INTRON mld
2R	13762794	2R_13762794_SNP [dm3] 2R_17875289_SNP [dm6]	T	C	1.631e^-4	0.688	INTRON Elk
X	7939965	X_7939965_SNP [dm3] X_8045932_SNP [dm6]	C	A	1.636e^-4	0.688	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
3L	15670950	3L_15670950_SNP [dm3] 3L_15677850_SNP [dm6]	C	T	1.645e^-4	0.688	INTERGENIC
2R	8615577	2R_8615577_SNP [dm3] 2R_12728072_SNP [dm6]	C	T	1.653e^-4	0.688	INTRON CG42663
3L	8328631	3L_8328631_SNP [dm3] 3L_8335531_SNP [dm6]	A	C	1.654e^-4	0.688	INTERGENIC
2L	7727797	2L_7727797_SNP [dm3] 2L_7727797_SNP [dm6]	C	A	1.657e^-4	0.688	INTRON CG13796
2R	1840027	2R_1840027_DEL [dm3] 2R_5952522_DEL [dm6]	CAGTGCAC	C	1.659e^-4	0.688	INTERGENIC
X	7144883	X_7144883_SNP [dm3] X_7250850_SNP [dm6]	A	T	1.662e^-4	0.688	INTRON CR44357	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	7278506	3L_7278506_SNP [dm3] 3L_7285406_SNP [dm6]	T	C	1.670e^-4	0.688	INTRON unc-13-4A
3L	8994995	3L_8994995_SNP [dm3] 3L_9001895_SNP [dm6]	G	A	1.673e^-4	0.688	SYNONYMOUS_CODING CG5087	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	17673261	3L_17673261_SNP [dm3] 3L_17680161_SNP [dm6]	C	T	1.673e^-4	0.688	INTRON CG34251
3R	2745594	3R_2745594_SNP [dm3] 3R_6919872_SNP [dm6]	A	T	1.678e^-4	0.688	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12504730	3L_12504730_SNP [dm3] 3L_12511630_SNP [dm6]	C	G	1.685e^-4	0.688	SYNONYMOUS_CODING sti
X	14756019	X_14756019_SNP [dm3] X_14861986_SNP [dm6]	T	A	1.691e^-4	0.688	INTRON Flo2
3L	6254144	3L_6254144_SNP [dm3] 3L_6261044_SNP [dm6]	C	A	1.694e^-4	0.688	UPSTREAM ImpL3 INTRON ImpL3
2L	1575081	2L_1575081_SNP [dm3] 2L_1575081_SNP [dm6]	G	A	1.695e^-4	0.688	INTRON haf
3L	15671030	3L_15671030_SNP [dm3] 3L_15677930_SNP [dm6]	T	C	1.695e^-4	0.688	INTERGENIC
3L	9366437	3L_9366437_SNP [dm3] 3L_9373337_SNP [dm6]	G	T	1.697e^-4	0.688	UPSTREAM Hsp67Bc & 1 other INTRON Hsp22 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	18144011	3L_18144011_SNP [dm3] 3L_18150911_SNP [dm6]	A	C	1.699e^-4	0.688	INTRON CG7330
3L	1021978	3L_1021978_SNP [dm3] 3L_1021978_SNP [dm6]	G	A	1.706e^-4	0.688	INTRON trio
3L	21338121	3L_21338121_SNP [dm3] 3L_21345021_SNP [dm6]	T	G	1.711e^-4	0.688	UTR_3_PRIME ebd2 INTRON CG32436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7901429	2L_7901429_SNP [dm3] 2L_7901429_SNP [dm6]	A	G	1.712e^-4	0.688	INTRON Snoo
2R	5590973	2R_5590973_SNP [dm3] 2R_9703468_SNP [dm6]	T	A	1.717e^-4	0.688	UPSTREAM CG30002 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	12504688	3L_12504688_SNP [dm3] 3L_12511588_SNP [dm6]	G	A	1.726e^-4	0.688	SYNONYMOUS_CODING sti
2R	16873216	2R_16873216_SNP [dm3] 2R_20985711_SNP [dm6]	G	A	1.729e^-4	0.688	SYNONYMOUS_CODING CG15651	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24658738	3R_24658738_SNP [dm3] 3R_28833016_SNP [dm6]	A	G	1.730e^-4	0.688	UTR_3_PRIME Apc UPSTREAM WASp
3L	2513633	3L_2513633_SNP [dm3] 3L_2513633_SNP [dm6]	G	T	1.730e^-4	0.688	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2904513	3L_2904513_SNP [dm3] 3L_2904513_SNP [dm6]	T	A	1.732e^-4	0.688	INTRON Shab
3R	14109128	3R_14109128_SNP [dm3] 3R_18283406_SNP [dm6]	T	A	1.735e^-4	0.688	UPSTREAM CG8064 DOWNSTREAM eIF-1A INTRON CG14312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	6747096	X_6747096_INS [dm3] X_6853063_INS [dm6]	T	TAAA	1.737e^-4	0.688	UPSTREAM CG14434 INTRON CG14434	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12552994	3L_12552994_SNP [dm3] 3L_12559894_SNP [dm6]	C	T	1.739e^-4	0.688	INTRON sowah
3L	12849299	3L_12849299_SNP [dm3] 3L_12856199_SNP [dm6]	T	C	1.740e^-4	0.688	SYNONYMOUS_CODING Ent3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20347612	X_20347612_SNP [dm3] X_20476585_SNP [dm6]	T	A	1.742e^-4	0.688	SYNONYMOUS_CODING RhoGAP19D	TF binding site mE1_TFBS_cad
3R	17649689	3R_17649689_SNP [dm3] 3R_21823967_SNP [dm6]	C	G	1.748e^-4	0.688	EXON CR45632	TF binding site BDTNP1_TFBS_dl
3R	21297868	3R_21297868_SNP [dm3] 3R_25472146_SNP [dm6]	A	G	1.749e^-4	0.688	INTRON Fur1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3532195	2R_3532195_SNP [dm3] 2R_7644690_SNP [dm6]	G	C	1.755e^-4	0.688	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
2R	12806754	2R_12806754_SNP [dm3] 2R_16919249_SNP [dm6]	T	G	1.755e^-4	0.688	INTERGENIC
X	1542966	X_1542966_SNP [dm3] X_1648933_SNP [dm6]	G	T	1.758e^-4	0.688	NON_SYNONYMOUS_CODING br UTR_3_PRIME br INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9355591	2R_9355591_SNP [dm3] 2R_13468086_SNP [dm6]	A	C	1.758e^-4	0.688	INTRON arr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
3L	10818734	3L_10818734_SNP [dm3] 3L_10825634_SNP [dm6]	G	C	1.759e^-4	0.688	DOWNSTREAM CR45246 INTERGENIC
2L	2949190	2L_2949190_SNP [dm3] 2L_2949190_SNP [dm6]	T	C	1.764e^-4	0.688	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6719236	2R_6719236_SNP [dm3] 2R_10831731_SNP [dm6]	G	C	1.773e^-4	0.688	INTRON CG12344	TF binding site mE1_TFBS_inv
3L	7596801	3L_7596801_SNP [dm3] 3L_7603701_SNP [dm6]	G	T	1.785e^-4	0.688	NON_SYNONYMOUS_CODING CG33275
2R	17477121	2R_17477121_SNP [dm3] 2R_21589616_SNP [dm6]	C	T	1.788e^-4	0.688	UPSTREAM CG33225 INTERGENIC
X	3108671	X_3108671_SNP [dm3] X_3214638_SNP [dm6]	T	C	1.795e^-4	0.688	INTRON dnc
2L	14894804	2L_14894804_SNP [dm3] 2L_14894804_SNP [dm6]	T	C	1.801e^-4	0.688	INTERGENIC
3R	21086787	3R_21086787_SNP [dm3] 3R_25261065_SNP [dm6]	C	T	1.801e^-4	0.688	UTR_3_PRIME CG10425 DOWNSTREAM CG11857
3L	4098733	3L_4098733_SNP [dm3] 3L_4098733_SNP [dm6]	G	A	1.802e^-4	0.688	INTRON CG14995	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	6929352	2R_6929352_SNP [dm3] 2R_11041847_SNP [dm6]	A	T	1.804e^-4	0.688	INTRON luna	TF binding site mE1_TFBS_cad
2R	9404115	2R_9404115_SNP [dm3] 2R_13516610_SNP [dm6]	C	T	1.810e^-4	0.688	SYNONYMOUS_CODING CG13330 UTR_3_PRIME Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1072483	2R_1072483_SNP [dm3] 2R_5184978_SNP [dm6]	A	G	1.816e^-4	0.688	INTRON Nipped-A
3R	12190084	3R_12190084_SNP [dm3] 3R_16364362_SNP [dm6]	T	G	1.825e^-4	0.688	INTRON CG14880
3L	10303441	3L_10303441_SNP [dm3] 3L_10310341_SNP [dm6]	T	C	1.834e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15764950	3R_15764950_SNP [dm3] 3R_19939228_SNP [dm6]	T	G	1.836e^-4	0.688	INTRON Hs6st
2L	11626266	2L_11626266_SNP [dm3] 2L_11626266_SNP [dm6]	A	G	1.837e^-4	0.688	UTR_3_PRIME kek2
3L	15718185	3L_15718185_SNP [dm3] 3L_15725085_SNP [dm6]	A	C	1.838e^-4	0.688	INTRON comm
3R	24267354	3R_24267354_SNP [dm3] 3R_28441632_SNP [dm6]	C	G	1.843e^-4	0.688	INTRON beat-VI
3L	9881968	3L_9881968_SNP [dm3] 3L_9888868_SNP [dm6]	A	G	1.846e^-4	0.688	UTR_5_PRIME CalpB UPSTREAM CalpB & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11656946	2L_11656946_SNP [dm3] 2L_11656946_SNP [dm6]	A	T	1.847e^-4	0.688	UPSTREAM CG43167 INTERGENIC
X	22004359	X_22004359_SNP [dm3] X_22602523_SNP [dm6]	A	G	1.857e^-4	0.688	INTRON Cda4
2L	7901431	2L_7901431_SNP [dm3] 2L_7901431_SNP [dm6]	T	A	1.859e^-4	0.688	INTRON Snoo
3R	17641899	3R_17641899_DEL [dm3] 3R_21816177_DEL [dm6]	GC	G	1.864e^-4	0.688	INTRON CASK
2L	1575742	2L_1575742_SNP [dm3] 2L_1575742_SNP [dm6]	T	C	1.871e^-4	0.688	INTRON haf
2R	18086887	2R_18086887_SNP [dm3] 2R_22199382_SNP [dm6]	C	T	1.871e^-4	0.688	INTRON Swim
X	12234988	X_12234988_SNP [dm3] X_12340955_SNP [dm6]	T	C	1.872e^-4	0.688	INTERGENIC
X	18643307	X_18643307_SNP [dm3] X_18749274_SNP [dm6]	C	G	1.872e^-4	0.688	UPSTREAM CG12609 INTERGENIC
X	18643309	X_18643309_SNP [dm3] X_18749276_SNP [dm6]	C	G	1.872e^-4	0.688	UPSTREAM CG12609 INTERGENIC
3R	27007621	3R_27007621_SNP [dm3] 3R_31181899_SNP [dm6]	A	G	1.879e^-4	0.688	SYNONYMOUS_CODING mesh	TF binding site mE1_TFBS_cad
2R	13718477	2R_13718477_SNP [dm3] 2R_17830972_SNP [dm6]	G	A	1.879e^-4	0.688	INTRON grh	TF binding site mE1_TFBS_cad
3R	17691971	3R_17691971_SNP [dm3] 3R_21866249_SNP [dm6]	T	A	1.880e^-4	0.688	SYNONYMOUS_CODING CG6569 DOWNSTREAM CG6569 & 1 other
2L	5658215	2L_5658215_SNP [dm3] 2L_5658215_SNP [dm6]	G	C	1.887e^-4	0.688	INTRON CG31646	TF binding site BDTNP1_TFBS_dl
3L	14373328	3L_14373328_SNP [dm3] 3L_14380228_SNP [dm6]	T	C	1.891e^-4	0.688	INTERGENIC
3R	21083424	3R_21083424_SNP [dm3] 3R_25257702_SNP [dm6]	G	A	1.893e^-4	0.688	SYNONYMOUS_CODING Nup358	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14390231	2R_14390231_SNP [dm3] 2R_18502726_SNP [dm6]	A	T	1.895e^-4	0.688	UPSTREAM GstE11 INTERGENIC
2R	17437346	2R_17437346_SNP [dm3] 2R_21549841_SNP [dm6]	T	G	1.899e^-4	0.688	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1392582	3L_1392582_SNP [dm3] 3L_1392582_SNP [dm6]	T	C	1.900e^-4	0.688	INTRON Ptp61F	TF binding site mE1_TFBS_cad
2L	3815261	2L_3815261_SNP [dm3] 2L_3815261_SNP [dm6]	T	A	1.902e^-4	0.688	UPSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	18216702	3L_18216702_DEL [dm3] 3L_18223602_DEL [dm6]	AT	A	1.905e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18216709	3L_18216709_SNP [dm3] 3L_18223609_SNP [dm6]	G	A	1.905e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18216710	3L_18216710_INS [dm3] 3L_18223610_INS [dm6]	G	GCTTAAAC	1.905e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18216735	3L_18216735_SNP [dm3] 3L_18223635_SNP [dm6]	C	G	1.905e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_inv
3R	6667237	3R_6667237_INS [dm3] 3R_10841515_INS [dm6]	A	AA	1.906e^-4	0.688	INTRON Cad86C
3R	21845318	3R_21845318_SNP [dm3] 3R_26019596_SNP [dm6]	A	G	1.907e^-4	0.688	UPSTREAM CR43643 DOWNSTREAM CR43644 INTERGENIC
3L	2471173	3L_2471173_SNP [dm3] 3L_2471173_SNP [dm6]	C	A	1.907e^-4	0.688	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	12586685	2L_12586685_INS [dm3] 2L_12586685_INS [dm6]	A	AAAGACA	1.909e^-4	0.688	UPSTREAM nub INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13333499	3L_13333499_SNP [dm3] 3L_13340399_SNP [dm6]	T	A	1.910e^-4	0.688	INTERGENIC
2L	1578696	2L_1578696_SNP [dm3] 2L_1578696_SNP [dm6]	A	T	1.917e^-4	0.688	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6440881	3L_6440881_SNP [dm3] 3L_6447781_SNP [dm6]	A	C	1.922e^-4	0.688	INTRON CG42747
3R	22711042	3R_22711042_SNP [dm3] 3R_26885320_SNP [dm6]	A	G	1.923e^-4	0.688	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16348988	3R_16348988_DEL [dm3] 3R_20523266_DEL [dm6]	TTAA	T	1.931e^-4	0.688	INTERGENIC
2R	3221817	2R_3221817_INS [dm3] 2R_7334312_INS [dm6]	T	TT	1.938e^-4	0.688	INTRON Dscam1 & 1 other	TF binding site mE1_TFBS_chinmo
3R	16348985	3R_16348985_INS [dm3] 3R_20523263_INS [dm6]	C	CAA	1.940e^-4	0.688	INTERGENIC
2L	2949171	2L_2949171_SNP [dm3] 2L_2949171_SNP [dm6]	G	A	1.944e^-4	0.688	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5856905	X_5856905_SNP [dm3] X_5962872_SNP [dm6]	C	T	1.945e^-4	0.688	NON_SYNONYMOUS_CODING fs_1_M3	TF binding site mE1_TFBS_chinmo
2R	19109400	2R_19109400_SNP [dm3] 2R_23221877_SNP [dm6]	C	T	1.946e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21298246	3R_21298246_SNP [dm3] 3R_25472524_SNP [dm6]	G	A	1.947e^-4	0.688	UTR_5_PRIME Fur1 UPSTREAM Vps33B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	10776466	3L_10776466_SNP [dm3] 3L_10783366_SNP [dm6]	T	C	1.950e^-4	0.688	INTERGENIC
3L	17588943	3L_17588943_SNP [dm3] 3L_17595843_SNP [dm6]	G	T	1.952e^-4	0.688	INTRON Eip74EF
2L	2983095	2L_2983095_SNP [dm3] 2L_2983095_SNP [dm6]	G	A	1.953e^-4	0.688	SYNONYMOUS_CODING Chd1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9710304	3L_9710304_SNP [dm3] 3L_9717204_SNP [dm6]	G	A	1.955e^-4	0.688	UTR_3_PRIME vsg DOWNSTREAM CG18178 & 1 other
X	18641274	X_18641274_SNP [dm3] X_18747241_SNP [dm6]	T	A	1.959e^-4	0.688	UTR_3_PRIME CG12609
3L	12141417	3L_12141417_SNP [dm3] 3L_12148317_SNP [dm6]	A	G	1.962e^-4	0.688	UPSTREAM eap INTRON Nrx-IV
2R	12285567	2R_12285567_SNP [dm3] 2R_16398062_SNP [dm6]	C	T	1.963e^-4	0.688	UPSTREAM Sema-2b INTRON Sema-2b
2R	17309186	2R_17309186_INS [dm3] 2R_21421681_INS [dm6]	T	TT	1.966e^-4	0.688	INTRON Sdc
3R	2894058	3R_2894058_SNP [dm3] 3R_7068336_SNP [dm6]	C	T	1.968e^-4	0.688	INTRON CG1965
2L	9215277	2L_9215277_SNP [dm3] 2L_9215277_SNP [dm6]	T	C	1.971e^-4	0.688	INTRON tai
3L	9555380	3L_9555380_SNP [dm3] 3L_9562280_SNP [dm6]	T	C	1.971e^-4	0.688	INTRON CG42673
2L	7900233	2L_7900233_SNP [dm3] 2L_7900233_SNP [dm6]	C	T	1.973e^-4	0.688	INTRON Snoo
2R	13953679	2R_13953679_INS [dm3] 2R_18066174_INS [dm6]	C	CTGTATTTCAC...	1.982e^-4	0.688	INTRON CG34386	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	2549453	3R_2549453_SNP [dm3] 3R_6723731_SNP [dm6]	T	C	1.984e^-4	0.688	INTRON pb	enhancer mE1_CBP_Enhancers regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	10456418	3L_10456418_SNP [dm3] 3L_10463318_SNP [dm6]	T	C	1.985e^-4	0.688	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	21210097	3R_21210097_SNP [dm3] 3R_25384375_SNP [dm6]	A	T	1.992e^-4	0.688	SYNONYMOUS_CODING CG31437 DOWNSTREAM Fur1 INTRON Fur1
3R	2820006	3R_2820006_SNP [dm3] 3R_6994284_SNP [dm6]	C	G	1.998e^-4	0.688	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1379299	3L_1379299_SNP [dm3] 3L_1379299_SNP [dm6]	G	C	1.998e^-4	0.688	UPSTREAM tRNA:CR32330 & 1 other INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4036949	2L_4036949_SNP [dm3] 2L_4036949_SNP [dm6]	G	T	1.998e^-4	0.688	INTRON ed
2L	7902422	2L_7902422_SNP [dm3] 2L_7902422_SNP [dm6]	T	C	2.003e^-4	0.688	INTRON Snoo
3L	21122249	3L_21122249_SNP [dm3] 3L_21129149_SNP [dm6]	T	A	2.005e^-4	0.688	INTRON ko
X	2474934	X_2474934_INS [dm3] X_2580901_INS [dm6]	G	GG	2.005e^-4	0.688	UPSTREAM CG13759 & 1 other INTERGENIC
3R	22501456	3R_22501456_SNP [dm3] 3R_26675734_SNP [dm6]	A	G	2.005e^-4	0.688	INTRON beat-VII
2R	9451104	2R_9451104_SNP [dm3] 2R_13563599_SNP [dm6]	C	G	2.008e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12285219	2R_12285219_SNP [dm3] 2R_16397714_SNP [dm6]	G	A	2.010e^-4	0.688	INTRON Sema-2b
2R	16905264	2R_16905264_SNP [dm3] 2R_21017759_SNP [dm6]	T	C	2.011e^-4	0.688	UPSTREAM RIC-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	14185019	3L_14185019_SNP [dm3] 3L_14191919_SNP [dm6]	T	C	2.014e^-4	0.688	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
3R	9511399	3R_9511399_SNP [dm3] 3R_13685677_SNP [dm6]	T	A	2.020e^-4	0.688	INTRON omd & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	22004356	X_22004356_SNP [dm3] X_22602520_SNP [dm6]	T	C	2.021e^-4	0.688	INTRON Cda4
X	22004358	X_22004358_SNP [dm3] X_22602522_SNP [dm6]	T	C	2.025e^-4	0.688	INTRON Cda4
2R	12806773	2R_12806773_DEL [dm3] 2R_16919268_DEL [dm6]	TTGTTGCTG	T	2.028e^-4	0.688	INTERGENIC
2R	9456064	2R_9456064_SNP [dm3] 2R_13568559_SNP [dm6]	C	A	2.035e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	6092821	2L_6092821_SNP [dm3] 2L_6092821_SNP [dm6]	G	T	2.037e^-4	0.688	INTRON Kr-h1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	6930348	2R_6930348_SNP [dm3] 2R_11042843_SNP [dm6]	A	G	2.040e^-4	0.688	INTRON luna	TF binding site mE1_TFBS_cad
3L	9365875	3L_9365875_SNP [dm3] 3L_9372775_SNP [dm6]	G	A	2.046e^-4	0.688	UTR_5_PRIME Hsp67Bb UPSTREAM Hsp22 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16777987	2R_16777987_SNP [dm3] 2R_20890482_SNP [dm6]	G	T	2.052e^-4	0.688	INTRON otp	TF binding site mE1_TFBS_chinmo
3R	18114847	3R_18114847_SNP [dm3] 3R_22289125_SNP [dm6]	G	C	2.060e^-4	0.688	INTRON SKIP
2L	2544985	2L_2544985_SNP [dm3] 2L_2544985_SNP [dm6]	C	A	2.067e^-4	0.688	INTERGENIC
2R	12285192	2R_12285192_SNP [dm3] 2R_16397687_SNP [dm6]	C	T	2.072e^-4	0.688	INTRON Sema-2b
X	20759541	X_20759541_SNP [dm3] X_20888514_SNP [dm6]	T	A	2.073e^-4	0.688	INTRON shakB
3L	2840797	3L_2840797_SNP [dm3] 3L_2840797_SNP [dm6]	G	C	2.075e^-4	0.688	INTRON CG43444
3L	19615632	3L_19615632_SNP [dm3] 3L_19622532_SNP [dm6]	C	T	2.083e^-4	0.688	NON_SYNONYMOUS_CODING ms_3_76Cc
3R	24165971	3R_24165971_SNP [dm3] 3R_28340249_SNP [dm6]	A	G	2.084e^-4	0.688	UPSTREAM Moca-cyp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5485995	2L_5485995_SNP [dm3] 2L_5485995_SNP [dm6]	C	A	2.091e^-4	0.688	UPSTREAM CR45287 INTERGENIC
X	6099712	X_6099712_SNP [dm3] X_6205679_SNP [dm6]	A	G	2.095e^-4	0.688	INTERGENIC
3L	7877469	3L_7877469_SNP [dm3] 3L_7884369_SNP [dm6]	C	A	2.108e^-4	0.688	INTRON CG32365
3R	11160128	3R_11160128_SNP [dm3] 3R_15334406_SNP [dm6]	C	T	2.109e^-4	0.688	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12415926	X_12415926_SNP [dm3] X_12521893_SNP [dm6]	G	A	2.110e^-4	0.688	INTRON CG43921	TF binding site mE1_TFBS_chinmo
2R	3045966	2R_3045966_SNP [dm3] 2R_7158461_SNP [dm6]	A	T	2.110e^-4	0.688	UPSTREAM nec INTRON pk	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	21154115	3L_21154115_DEL [dm3] 3L_21161015_DEL [dm6]	AGCGGAAAATCACATTTAGC...	A	2.112e^-4	0.688	INTRON Ac78C
2L	9251570	2L_9251570_SNP [dm3] 2L_9251570_SNP [dm6]	A	G	2.113e^-4	0.688	UTR_3_PRIME borr UPSTREAM aust & 1 other
2L	14894866	2L_14894866_SNP [dm3] 2L_14894866_SNP [dm6]	G	A	2.120e^-4	0.688	INTERGENIC
3L	12504655	3L_12504655_SNP [dm3] 3L_12511555_SNP [dm6]	G	A	2.124e^-4	0.688	SYNONYMOUS_CODING sti
X	21860450	X_21860450_SNP [dm3] X_22458614_SNP [dm6]	A	G	2.125e^-4	0.688	INTRON CG14619
2L	9251338	2L_9251338_SNP [dm3] 2L_9251338_SNP [dm6]	A	T	2.127e^-4	0.688	UPSTREAM aust DOWNSTREAM borr EXON CR43734
2L	9251341	2L_9251341_SNP [dm3] 2L_9251341_SNP [dm6]	A	G	2.127e^-4	0.688	UPSTREAM aust DOWNSTREAM borr EXON CR43734
2R	14278298	2R_14278298_SNP [dm3] 2R_18390793_SNP [dm6]	G	T	2.129e^-4	0.688	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
2R	12285499	2R_12285499_SNP [dm3] 2R_16397994_SNP [dm6]	C	T	2.141e^-4	0.688	UPSTREAM Sema-2b INTRON Sema-2b
2L	8317609	2L_8317609_SNP [dm3] 2L_8317609_SNP [dm6]	T	C	2.153e^-4	0.688	DOWNSTREAM CG7806 INTRON mtsh
3L	2688528	3L_2688528_SNP [dm3] 3L_2688528_SNP [dm6]	C	T	2.159e^-4	0.688	INTRON Fife
3L	8875389	3L_8875389_SNP [dm3] 3L_8882289_SNP [dm6]	C	T	2.174e^-4	0.688	INTRON dally
3R	2626031	3R_2626031_SNP [dm3] 3R_6800309_SNP [dm6]	G	A	2.174e^-4	0.688	INTRON Dfd	regulatory region FlyBase REDfly_CRMs
2R	18620080	2R_18620080_SNP [dm3] 2R_22732575_SNP [dm6]	C	T	2.175e^-4	0.688	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12356219	2R_12356219_SNP [dm3] 2R_16468714_SNP [dm6]	T	C	2.176e^-4	0.688	INTRON CheB53b
3R	24671661	3R_24671661_SNP [dm3] 3R_28845939_SNP [dm6]	T	A	2.184e^-4	0.688	UTR_5_PRIME spg INTRON spg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
X	18642497	X_18642497_SNP [dm3] X_18748464_SNP [dm6]	C	G	2.209e^-4	0.688	UPSTREAM CG12609 INTERGENIC
2R	12439286	2R_12439286_INS [dm3] 2R_16551781_INS [dm6]	A	CG	2.215e^-4	0.688	UPSTREAM Syn2 INTERGENIC
X	5872225	X_5872225_SNP [dm3] X_5978192_SNP [dm6]	T	A	2.216e^-4	0.688	INTRON Grip
3R	9299107	3R_9299107_SNP [dm3] 3R_13473385_SNP [dm6]	G	T	2.226e^-4	0.688	INTERGENIC
2R	12539780	2R_12539780_SNP [dm3] 2R_16652275_SNP [dm6]	G	A	2.232e^-4	0.688	SYNONYMOUS_CODING Amyrel DOWNSTREAM Nach	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12344275	2R_12344275_SNP [dm3] 2R_16456770_SNP [dm6]	A	G	2.237e^-4	0.688	INTERGENIC
2L	14696348	2L_14696348_SNP [dm3] 2L_14696348_SNP [dm6]	A	C	2.238e^-4	0.688	INTERGENIC
3R	22499249	3R_22499249_SNP [dm3] 3R_26673527_SNP [dm6]	G	A	2.243e^-4	0.688	INTRON beat-VII
3R	17143885	3R_17143885_DEL [dm3] 3R_21318163_DEL [dm6]	TT	T	2.245e^-4	0.688	DOWNSTREAM CG16791 & 1 other INTERGENIC
2L	17060503	2L_17060503_SNP [dm3] 2L_17060503_SNP [dm6]	A	T	2.245e^-4	0.688	INTERGENIC
2L	9861233	2L_9861233_SNP [dm3] 2L_9861233_SNP [dm6]	C	A	2.245e^-4	0.688	INTRON nAChRalpha6	TF binding site mE1_TFBS_HSA
3L	9587155	3L_9587155_SNP [dm3] 3L_9594055_SNP [dm6]	G	A	2.253e^-4	0.688	UTR_3_PRIME CG42673 INTRON CG42673
3R	21689500	3R_21689500_SNP [dm3] 3R_25863778_SNP [dm6]	G	A	2.255e^-4	0.688	INTRON CG5890
3L	1563474	3L_1563474_SNP [dm3] 3L_1563474_SNP [dm6]	C	A	2.259e^-4	0.688	INTRON CG7879
2R	19022313	2R_19022313_SNP [dm3] 2R_23134790_SNP [dm6]	G	T	2.261e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	15213498	2R_15213498_SNP [dm3] 2R_19325993_SNP [dm6]	C	G	2.264e^-4	0.688	SYNONYMOUS_CODING Rgk1 UPSTREAM Rgk1	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
3R	17531226	3R_17531226_SNP [dm3] 3R_21705504_SNP [dm6]	T	C	2.266e^-4	0.688	INTRON CG31176
2R	6719869	2R_6719869_SNP [dm3] 2R_10832364_SNP [dm6]	G	A	2.267e^-4	0.688	INTRON CG12344	TF binding site mE1_TFBS_inv
X	22004362	X_22004362_SNP [dm3] X_22602526_SNP [dm6]	A	T	2.268e^-4	0.688	INTRON Cda4
3R	14199151	3R_14199151_DEL [dm3] 3R_18373429_DEL [dm6]	TCTA	GT	2.269e^-4	0.688	UPSTREAM gl DOWNSTREAM CG14310 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20604746	3L_20604746_SNP [dm3] 3L_20611646_SNP [dm6]	G	A	2.270e^-4	0.688	INTRON knrl
3R	26211008	3R_26211008_SNP [dm3] 3R_30385286_SNP [dm6]	T	A	2.271e^-4	0.688	DOWNSTREAM Fer1HCH INTERGENIC
2R	3840098	2R_3840098_SNP [dm3] 2R_7952593_SNP [dm6]	T	A	2.276e^-4	0.688	INTRON CG14764
X	8550084	X_8550084_SNP [dm3] X_8656051_SNP [dm6]	T	A	2.277e^-4	0.688	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_h mE1_TFBS_HSA
3L	3049887	3L_3049887_SNP [dm3] 3L_3049887_SNP [dm6]	G	A	2.278e^-4	0.688	UTR_3_PRIME Sk2 UPSTREAM CG32485	TF binding site mE1_TFBS_cad
3R	8543895	3R_8543895_SNP [dm3] 3R_12718173_SNP [dm6]	A	G	2.286e^-4	0.688	INTRON Men
3R	13664001	3R_13664001_SNP [dm3] 3R_17838279_SNP [dm6]	G	A	2.288e^-4	0.688	INTRON tinc	TF binding site mE1_TFBS_inv
3L	22598028	3L_22598028_SNP [dm3] 3L_22604928_SNP [dm6]	T	G	2.297e^-4	0.688	INTRON CG14459
2L	19810710	2L_19810710_SNP [dm3] 2L_19810710_SNP [dm6]	A	G	2.302e^-4	0.688	UPSTREAM snRNA:U4:38AB INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad
3R	15428659	3R_15428659_SNP [dm3] 3R_19602937_SNP [dm6]	A	G	2.303e^-4	0.688	UPSTREAM CG7342 DOWNSTREAM CG7333 INTERGENIC
3R	18115133	3R_18115133_SNP [dm3] 3R_22289411_SNP [dm6]	T	G	2.304e^-4	0.688	INTRON SKIP
3R	14019220	3R_14019220_SNP [dm3] 3R_18193498_SNP [dm6]	A	G	2.307e^-4	0.688	UTR_3_PRIME Ssdp
3L	4482014	3L_4482014_SNP [dm3] 3L_4482014_SNP [dm6]	A	T	2.310e^-4	0.688	UPSTREAM CG11350 DOWNSTREAM CG7465 INTERGENIC
2R	13671211	2R_13671211_SNP [dm3] 2R_17783706_SNP [dm6]	A	G	2.315e^-4	0.688	DOWNSTREAM mir-31a INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13957126	2R_13957126_DEL [dm3] 2R_18069621_DEL [dm6]	AT	A	2.319e^-4	0.688	INTRON CG34386
3R	26432441	3R_26432441_SNP [dm3] 3R_30606719_SNP [dm6]	G	T	2.320e^-4	0.688	NON_SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
3L	5866852	3L_5866852_SNP [dm3] 3L_5873752_SNP [dm6]	A	T	2.322e^-4	0.688	SYNONYMOUS_CODING CG18586 DOWNSTREAM CG5568
3L	1317828	3L_1317828_INS [dm3] 3L_1317828_INS [dm6]	A	AAA	2.326e^-4	0.688	UPSTREAM Myo61F INTRON CG9153
2R	12281986	2R_12281986_SNP [dm3] 2R_16394481_SNP [dm6]	A	T	2.327e^-4	0.688	INTRON Sema-2b
3R	18243765	3R_18243765_SNP [dm3] 3R_22418043_SNP [dm6]	G	A	2.328e^-4	0.688	DOWNSTREAM lqfR INTRON lqfR
3L	10947478	3L_10947478_SNP [dm3] 3L_10954378_SNP [dm6]	C	T	2.329e^-4	0.688	INTERGENIC
3R	18282817	3R_18282817_SNP [dm3] 3R_22457095_SNP [dm6]	C	T	2.346e^-4	0.688	SYNONYMOUS_CODING CG34376	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9544033	3L_9544033_SNP [dm3] 3L_9550933_SNP [dm6]	T	A	2.346e^-4	0.688	INTRON CG42673
2R	5590898	2R_5590898_SNP [dm3] 2R_9703393_SNP [dm6]	C	G	2.348e^-4	0.688	UPSTREAM CG30002 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	14543663	2R_14543663_SNP [dm3] 2R_18656158_SNP [dm6]	A	G	2.351e^-4	0.688	INTRON SP2637	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14263189	X_14263189_SNP [dm3] X_14369156_SNP [dm6]	A	T	2.352e^-4	0.688	INTRON dpr8
2L	1578630	2L_1578630_SNP [dm3] 2L_1578630_SNP [dm6]	A	G	2.362e^-4	0.688	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8173060	X_8173060_SNP [dm3] X_8279027_SNP [dm6]	G	A	2.369e^-4	0.688	UTR_3_PRIME nAChRalpha3
2R	6293973	2R_6293973_SNP [dm3] 2R_10406468_SNP [dm6]	C	T	2.370e^-4	0.688	DOWNSTREAM CG12898 INTRON CG42732
X	3549071	X_3549071_INS [dm3] X_3655038_INS [dm6]	A	AAACA	2.375e^-4	0.688	INTRON AstA-R1
3L	7278499	3L_7278499_SNP [dm3] 3L_7285399_SNP [dm6]	T	C	2.377e^-4	0.688	INTRON unc-13-4A
3R	18201924	3R_18201924_SNP [dm3] 3R_22376202_SNP [dm6]	G	A	2.381e^-4	0.688	SYNONYMOUS_CODING CG18596 DOWNSTREAM CG7069	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	25046928	3R_25046928_SNP [dm3] 3R_29221206_SNP [dm6]	C	T	2.381e^-4	0.688	SYNONYMOUS_CODING Ef1gamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19022213	2R_19022213_SNP [dm3] 2R_23134690_SNP [dm6]	C	A	2.381e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	14878654	2R_14878654_SNP [dm3] 2R_18991149_SNP [dm6]	G	A	2.383e^-4	0.688	UTR_5_PRIME tn INTRON tn
2R	7263631	2R_7263631_DEL [dm3] 2R_11376126_DEL [dm6]	AATAC	A	2.384e^-4	0.688	INTRON CG13203	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5175312	3L_5175312_SNP [dm3] 3L_5182212_SNP [dm6]	T	C	2.396e^-4	0.688	INTRON shep
3L	11447171	3L_11447171_SNP [dm3] 3L_11454071_SNP [dm6]	G	C	2.400e^-4	0.688	INTERGENIC
2R	12336202	2R_12336202_SNP [dm3] 2R_16448697_SNP [dm6]	A	G	2.401e^-4	0.688	INTERGENIC
2R	12972050	2R_12972050_DEL [dm3] 2R_17084545_DEL [dm6]	ATA	A	2.417e^-4	0.688	INTRON CG30460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6635286	3L_6635286_SNP [dm3] 3L_6642186_SNP [dm6]	C	A	2.419e^-4	0.688	UPSTREAM CR45239 DOWNSTREAM CR45238 INTERGENIC
2R	19185710	2R_19185710_SNP [dm3] 2R_23298187_SNP [dm6]	G	T	2.419e^-4	0.688	INTERGENIC
X	22004364	X_22004364_DEL [dm3] X_22602528_DEL [dm6]	TATTATTA	CGC	2.422e^-4	0.688	INTRON Cda4
3R	22849076	3R_22849076_DEL [dm3] 3R_27023354_DEL [dm6]	CCAT	C	2.422e^-4	0.688	UPSTREAM CG6277 INTRON RYa-R
2L	7099774	2L_7099774_SNP [dm3] 2L_7099774_SNP [dm6]	T	C	2.426e^-4	0.688	UTR_3_PRIME Pvf3	TF binding site BDTNP1_TFBS_sna
X	15467545	X_15467545_SNP [dm3] X_15573512_SNP [dm6]	A	C	2.428e^-4	0.688	NON_SYNONYMOUS_CODING CG9213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14447711	2R_14447711_SNP [dm3] 2R_18560206_SNP [dm6]	G	T	2.430e^-4	0.688	NON_SYNONYMOUS_CODING GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14146517	3R_14146517_SNP [dm3] 3R_18320795_SNP [dm6]	T	A	2.441e^-4	0.688	INTRON CG31235
3L	5405240	3L_5405240_DEL [dm3] 3L_5412140_DEL [dm6]	AAGATAAACAT...	A	2.452e^-4	0.688	INTERGENIC
X	19212291	X_19212291_DEL [dm3] X_19318258_DEL [dm6]	CGTTGAATC	C	2.454e^-4	0.688	INTRON out	TF binding site BDTNP1_TFBS_da
X	3207337	X_3207337_SNP [dm3] X_3313304_SNP [dm6]	A	T	2.457e^-4	0.688	UPSTREAM dnc DOWNSTREAM CR44886 INTRON dnc
3R	2493820	3R_2493820_SNP [dm3] 3R_6668098_SNP [dm6]	G	A	2.460e^-4	0.688	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9857975	2L_9857975_SNP [dm3] 2L_9857975_SNP [dm6]	A	G	2.469e^-4	0.688	INTRON nAChRalpha6
2L	6093930	2L_6093930_SNP [dm3] 2L_6093930_SNP [dm6]	T	C	2.485e^-4	0.688	SYNONYMOUS_CODING Kr-h1 UTR_3_PRIME CG45075	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12859045	3L_12859045_SNP [dm3] 3L_12865945_SNP [dm6]	C	T	2.485e^-4	0.688	INTERGENIC
3R	26732159	3R_26732159_SNP [dm3] 3R_30906437_SNP [dm6]	A	G	2.488e^-4	0.688	INTERGENIC
3L	12140143	3L_12140143_SNP [dm3] 3L_12147043_SNP [dm6]	C	T	2.495e^-4	0.688	UPSTREAM CG5642 INTRON Nrx-IV	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16746808	2R_16746808_SNP [dm3] 2R_20859303_SNP [dm6]	G	A	2.495e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14278296	2R_14278296_SNP [dm3] 2R_18390791_SNP [dm6]	T	G	2.499e^-4	0.688	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
3L	5314735	3L_5314735_SNP [dm3] 3L_5321635_SNP [dm6]	G	A	2.505e^-4	0.688	INTERGENIC
3L	5613200	3L_5613200_SNP [dm3] 3L_5620100_SNP [dm6]	T	A	2.513e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
3L	2904506	3L_2904506_SNP [dm3] 3L_2904506_SNP [dm6]	A	T	2.517e^-4	0.688	INTRON Shab
3L	8989753	3L_8989753_SNP [dm3] 3L_8996653_SNP [dm6]	G	T	2.518e^-4	0.688	UPSTREAM smg INTRON smg	TF binding site BDTNP1_TFBS_dl
X	20344021	X_20344021_SNP [dm3] X_20472994_SNP [dm6]	T	A	2.525e^-4	0.688	NON_SYNONYMOUS_CODING RhoGAP19D	TF binding site mE1_TFBS_chinmo
X	3207238	X_3207238_SNP [dm3] X_3313205_SNP [dm6]	C	A	2.525e^-4	0.688	UPSTREAM dnc DOWNSTREAM CR44886 INTRON dnc
X	19632459	X_19632459_SNP [dm3] X_19738426_SNP [dm6]	T	A	2.531e^-4	0.688	UTR_3_PRIME CG14234	TF binding site mE1_TFBS_chinmo
3L	1646791	3L_1646791_SNP [dm3] 3L_1646791_SNP [dm6]	A	G	2.532e^-4	0.688	NON_SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20686658	3R_20686658_SNP [dm3] 3R_24860936_SNP [dm6]	C	G	2.532e^-4	0.688	UPSTREAM CG13639 DOWNSTREAM CG13640 INTERGENIC
3R	27010377	3R_27010377_SNP [dm3] 3R_31184655_SNP [dm6]	G	A	2.534e^-4	0.688	SYNONYMOUS_CODING mesh
2R	14684671	2R_14684671_SNP [dm3] 2R_18797166_SNP [dm6]	C	T	2.535e^-4	0.688	UTR_3_PRIME l_2_08717 UPSTREAM MFS15 DOWNSTREAM l_2_08717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21112570	3L_21112570_SNP [dm3] 3L_21119470_SNP [dm6]	A	T	2.549e^-4	0.688	INTRON ko	TF binding site mE1_TFBS_inv
3L	1187918	3L_1187918_SNP [dm3] 3L_1187918_SNP [dm6]	G	A	2.554e^-4	0.688	INTERGENIC
3L	2337302	3L_2337302_SNP [dm3] 3L_2337302_SNP [dm6]	A	G	2.555e^-4	0.688	INTRON MsR1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	16402883	2L_16402883_SNP [dm3] 2L_16402883_SNP [dm6]	A	G	2.556e^-4	0.688	INTRON CG5888
3L	5162056	3L_5162056_SNP [dm3] 3L_5168956_SNP [dm6]	A	T	2.557e^-4	0.688	INTRON shep	TF binding site mE1_TFBS_Kr
2L	7901054	2L_7901054_SNP [dm3] 2L_7901054_SNP [dm6]	C	T	2.558e^-4	0.688	INTRON Snoo
3R	14806799	3R_14806799_SNP [dm3] 3R_18981077_SNP [dm6]	G	A	2.561e^-4	0.688	UTR_5_PRIME Smu1 & 1 other UPSTREAM dnk & 1 other INTRON Smu1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Ubx
3L	7585469	3L_7585469_SNP [dm3] 3L_7592369_SNP [dm6]	A	C	2.566e^-4	0.688	UPSTREAM CG33275 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3834111	3R_3834111_SNP [dm3] 3R_8008389_SNP [dm6]	C	A	2.574e^-4	0.688	SYNONYMOUS_CODING CG11052 UPSTREAM CG2767
2L	1563327	2L_1563327_SNP [dm3] 2L_1563327_SNP [dm6]	C	A	2.577e^-4	0.688	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	914102	3L_914102_SNP [dm3] 3L_914102_SNP [dm6]	G	A	2.580e^-4	0.688	UTR_5_PRIME Glut1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14367618	3L_14367618_SNP [dm3] 3L_14374518_SNP [dm6]	C	T	2.583e^-4	0.688	INTERGENIC
X	9504940	X_9504940_SNP [dm3] X_9610907_SNP [dm6]	C	A	2.590e^-4	0.688	SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14073832	2R_14073832_SNP [dm3] 2R_18186327_SNP [dm6]	G	A	2.592e^-4	0.688	SYNONYMOUS_CODING CG33958
X	12415925	X_12415925_SNP [dm3] X_12521892_SNP [dm6]	T	C	2.594e^-4	0.688	INTRON CG43921	TF binding site mE1_TFBS_chinmo
3L	7092648	3L_7092648_SNP [dm3] 3L_7099548_SNP [dm6]	G	A	2.599e^-4	0.688	INTRON form3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6179571	3L_6179571_SNP [dm3] 3L_6186471_SNP [dm6]	G	A	2.600e^-4	0.688	SYNONYMOUS_CODING D19A DOWNSTREAM CG43293	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24165640	3R_24165640_INS [dm3] 3R_28339918_INS [dm6]	T	TT	2.602e^-4	0.688	UPSTREAM Moca-cyp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5866858	3L_5866858_SNP [dm3] 3L_5873758_SNP [dm6]	A	T	2.608e^-4	0.688	SYNONYMOUS_CODING CG18586 DOWNSTREAM CG5568
3R	12483332	3R_12483332_SNP [dm3] 3R_16657610_SNP [dm6]	A	G	2.612e^-4	0.688	UTR_3_PRIME Ubx DOWNSTREAM Ubx
2R	602061	2R_602061_SNP [dm3] 2R_4714556_SNP [dm6]	C	G	2.616e^-4	0.688	INTRON Nipped-B	transposable element FlyBase
2R	3506106	2R_3506106_SNP [dm3] 2R_7618601_SNP [dm6]	C	A	2.626e^-4	0.688	INTRON CG1358	TF binding site mE1_TFBS_chinmo
3L	12160357	3L_12160357_SNP [dm3] 3L_12167257_SNP [dm6]	A	G	2.632e^-4	0.688	SYNONYMOUS_CODING Rh7
3R	16726379	3R_16726379_SNP [dm3] 3R_20900657_SNP [dm6]	A	G	2.633e^-4	0.688	INTERGENIC
3L	9757597	3L_9757597_SNP [dm3] 3L_9764497_SNP [dm6]	T	A	2.633e^-4	0.688	INTRON CG8177
3L	21246021	3L_21246021_SNP [dm3] 3L_21252921_SNP [dm6]	T	C	2.635e^-4	0.688	INTRON Eip78C	TF binding site mE1_TFBS_inv
2L	1580652	2L_1580652_SNP [dm3] 2L_1580652_SNP [dm6]	G	A	2.637e^-4	0.688	INTRON haf
X	18207379	X_18207379_SNP [dm3] X_18313346_SNP [dm6]	T	C	2.638e^-4	0.688	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18116736	3R_18116736_SNP [dm3] 3R_22291014_SNP [dm6]	T	C	2.638e^-4	0.688	INTRON SKIP
3L	2484953	3L_2484953_SNP [dm3] 3L_2484953_SNP [dm6]	C	A	2.638e^-4	0.688	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	13669755	2R_13669755_SNP [dm3] 2R_17782250_SNP [dm6]	G	C	2.639e^-4	0.688	UPSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9442411	2R_9442411_SNP [dm3] 2R_13554906_SNP [dm6]	G	A	2.642e^-4	0.688	INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3R	26677222	3R_26677222_SNP [dm3] 3R_30851500_SNP [dm6]	G	C	2.646e^-4	0.688	UPSTREAM tll INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12208258	2L_12208258_SNP [dm3] 2L_12208258_SNP [dm6]	T	C	2.656e^-4	0.688	SYNONYMOUS_CODING CG31759 INTRON aret
2R	10332194	2R_10332194_SNP [dm3] 2R_14444689_SNP [dm6]	C	A	2.656e^-4	0.688	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	7391619	2L_7391619_SNP [dm3] 2L_7391619_SNP [dm6]	C	T	2.661e^-4	0.688	DOWNSTREAM gudu INTRON CG5160
2R	19109438	2R_19109438_SNP [dm3] 2R_23221915_SNP [dm6]	A	T	2.665e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19109444	2R_19109444_SNP [dm3] 2R_23221921_SNP [dm6]	T	A	2.665e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23760743	3R_23760743_SNP [dm3] 3R_27935021_SNP [dm6]	A	G	2.671e^-4	0.688	SYNONYMOUS_CODING Mes-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	6131157	X_6131157_SNP [dm3] X_6237124_SNP [dm6]	T	G	2.675e^-4	0.688	UPSTREAM CG14445 DOWNSTREAM CG14446 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	11190416	3R_11190416_SNP [dm3] 3R_15364694_SNP [dm6]	G	T	2.676e^-4	0.688	SYNONYMOUS_CODING CG34404 UPSTREAM CG6171	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21196959	3L_21196959_SNP [dm3] 3L_21203859_SNP [dm6]	G	C	2.677e^-4	0.688	UPSTREAM CG33056 & 2 others INTRON CG10512
2R	12223418	2R_12223418_SNP [dm3] 2R_16335913_SNP [dm6]	C	A	2.686e^-4	0.688	UPSTREAM Hmgs INTRON Vha44	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	683653	2L_683653_SNP [dm3] 2L_683653_SNP [dm6]	G	A	2.686e^-4	0.688	INTRON ds
2L	3221743	2L_3221743_SNP [dm3] 2L_3221743_SNP [dm6]	G	A	2.694e^-4	0.688	INTERGENIC
3L	21339996	3L_21339996_SNP [dm3] 3L_21346896_SNP [dm6]	A	G	2.699e^-4	0.688	UTR_5_PRIME ebd2 INTRON CG32436	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	14373748	2R_14373748_SNP [dm3] 2R_18486243_SNP [dm6]	C	G	2.703e^-4	0.688	INTRON CG30116
2L	7623766	2L_7623766_DEL [dm3] 2L_7623766_DEL [dm6]	GG	G	2.705e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16300297	2R_16300297_SNP [dm3] 2R_20412792_SNP [dm6]	C	A	2.711e^-4	0.688	INTERGENIC
2R	450254	2R_450254_SNP [dm3] 2R_4562749_SNP [dm6]	G	A	2.714e^-4	0.688	INTRON Stlk	transposable element FlyBase
3L	9515078	3L_9515078_SNP [dm3] 3L_9521978_SNP [dm6]	G	T	2.719e^-4	0.688	INTRON CG33700
3L	2368456	3L_2368456_SNP [dm3] 3L_2368456_SNP [dm6]	T	G	2.720e^-4	0.688	UTR_3_PRIME CG1317 INTRON CG1317
2L	3368531	2L_3368531_SNP [dm3] 2L_3368531_SNP [dm6]	A	G	2.729e^-4	0.688	INTRON CG34394
2L	15819870	2L_15819870_SNP [dm3] 2L_15819870_SNP [dm6]	A	T	2.731e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	9284083	3L_9284083_SNP [dm3] 3L_9290983_SNP [dm6]	G	A	2.733e^-4	0.688	INTERGENIC
2L	7094433	2L_7094433_MNP [dm3] 2L_7094433_MNP [dm6]	TTA	AAT	2.734e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2842417	3L_2842417_SNP [dm3] 3L_2842417_SNP [dm6]	A	C	2.737e^-4	0.688	INTRON CG43444
3R	27169061	3R_27169061_SNP [dm3] 3R_31343339_SNP [dm6]	A	G	2.745e^-4	0.688	INTRON CG34347
3L	10456431	3L_10456431_SNP [dm3] 3L_10463331_SNP [dm6]	G	A	2.746e^-4	0.688	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	12140736	3L_12140736_SNP [dm3] 3L_12147636_SNP [dm6]	G	T	2.748e^-4	0.688	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	25755230	3R_25755230_SNP [dm3] 3R_29929508_SNP [dm6]	T	C	2.755e^-4	0.688	SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522
2L	1578608	2L_1578608_SNP [dm3] 2L_1578608_SNP [dm6]	C	T	2.762e^-4	0.688	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	21857723	X_21857723_DEL [dm3] X_22455887_DEL [dm6]	AAA	A	2.769e^-4	0.688	UTR_5_PRIME CG14619 UPSTREAM wap & 1 other INTRON CG14619	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9857934	2L_9857934_SNP [dm3] 2L_9857934_SNP [dm6]	C	T	2.771e^-4	0.688	INTRON nAChRalpha6
X	5960684	X_5960684_DEL [dm3] X_6066651_DEL [dm6]	TTGT	T	2.779e^-4	0.688	UPSTREAM CG43115 INTERGENIC
3L	21095035	3L_21095035_SNP [dm3] 3L_21101935_SNP [dm6]	A	T	2.783e^-4	0.688	INTRON ko	regulatory region REDfly_CRMs
X	17040017	X_17040017_SNP [dm3] X_17145984_SNP [dm6]	G	A	2.783e^-4	0.688	UPSTREAM snoRNA:Psi18S-1854c & 3 others DOWNSTREAM snoRNA:Psi28S-1135d & 3 others INTRON RpS5a EXON snoRNA:Psi18S-1854a
3L	6173135	3L_6173135_SNP [dm3] 3L_6180035_SNP [dm6]	A	G	2.785e^-4	0.688	SYNONYMOUS_CODING CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	9356682	2R_9356682_SNP [dm3] 2R_13469177_SNP [dm6]	A	C	2.789e^-4	0.688	INTRON arr	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
2L	9250937	2L_9250937_SNP [dm3] 2L_9250937_SNP [dm6]	G	T	2.796e^-4	0.688	SYNONYMOUS_CODING aust DOWNSTREAM CR43734 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2841115	3L_2841115_SNP [dm3] 3L_2841115_SNP [dm6]	A	T	2.799e^-4	0.688	INTRON CG43444
3L	6176900	3L_6176900_SNP [dm3] 3L_6183800_SNP [dm6]	C	A	2.802e^-4	0.688	SYNONYMOUS_CODING D19B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3R	6496307	3R_6496307_SNP [dm3] 3R_10670585_SNP [dm6]	A	C	2.811e^-4	0.688	INTERGENIC
2R	13594747	2R_13594747_SNP [dm3] 2R_17707242_SNP [dm6]	A	G	2.818e^-4	0.688	SYNONYMOUS_CODING CG6424	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3R	18115174	3R_18115174_SNP [dm3] 3R_22289452_SNP [dm6]	C	G	2.823e^-4	0.688	INTRON SKIP
2R	18086798	2R_18086798_SNP [dm3] 2R_22199293_SNP [dm6]	A	C	2.823e^-4	0.688	INTRON Swim
3R	17691989	3R_17691989_SNP [dm3] 3R_21866267_SNP [dm6]	A	G	2.828e^-4	0.688	SYNONYMOUS_CODING CG6569 DOWNSTREAM CG6569 & 1 other
3L	19645508	3L_19645508_SNP [dm3] 3L_19652408_SNP [dm6]	G	A	2.840e^-4	0.688	SYNONYMOUS_CODING tey	TF binding site mE1_TFBS_cad
2R	470212	2R_470212_SNP [dm3] 2R_4582707_SNP [dm6]	G	C	2.840e^-4	0.688	INTERGENIC	transposable element FlyBase
3L	9642468	3L_9642468_SNP [dm3] 3L_9649368_SNP [dm6]	T	C	2.843e^-4	0.688	INTRON fry & 1 other
3L	19457159	3L_19457159_SNP [dm3] 3L_19464059_SNP [dm6]	A	T	2.844e^-4	0.688	UTR_3_PRIME CG14095
3L	13491459	3L_13491459_SNP [dm3] 3L_13498359_SNP [dm6]	G	A	2.847e^-4	0.688	INTRON Tgi
3R	22453639	3R_22453639_SNP [dm3] 3R_26627917_SNP [dm6]	G	A	2.859e^-4	0.688	UTR_3_PRIME TwdlK
2R	10694767	2R_10694767_SNP [dm3] 2R_14807262_SNP [dm6]	G	A	2.861e^-4	0.688	UPSTREAM kn INTERGENIC	regulatory region REDfly_CRMs
2R	9442395	2R_9442395_SNP [dm3] 2R_13554890_SNP [dm6]	T	C	2.861e^-4	0.688	INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3R	24601653	3R_24601653_SNP [dm3] 3R_28775931_SNP [dm6]	C	A	2.863e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7901428	2L_7901428_SNP [dm3] 2L_7901428_SNP [dm6]	C	T	2.864e^-4	0.688	INTRON Snoo
2R	14439417	2R_14439417_SNP [dm3] 2R_18551912_SNP [dm6]	T	C	2.865e^-4	0.688	INTERGENIC
3L	8725557	3L_8725557_SNP [dm3] 3L_8732457_SNP [dm6]	C	A	2.866e^-4	0.688	SPLICE_SITE_REGION Cp16 SYNONYMOUS_CODING Cp16 DOWNSTREAM Prm
3R	19766036	3R_19766036_SNP [dm3] 3R_23940314_SNP [dm6]	T	A	2.872e^-4	0.688	INTRON Gdh
3R	22120462	3R_22120462_SNP [dm3] 3R_26294740_SNP [dm6]	G	A	2.875e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9831212	3L_9831212_SNP [dm3] 3L_9838112_SNP [dm6]	A	G	2.876e^-4	0.688	SYNONYMOUS_CODING Cdk8 DOWNSTREAM RasGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18844942	3R_18844942_SNP [dm3] 3R_23019220_SNP [dm6]	T	G	2.881e^-4	0.688	INTERGENIC
2L	22196637	2L_22196637_SNP [dm3] 2L_22196637_SNP [dm6]	A	T	2.889e^-4	0.688	SYNONYMOUS_CODING Ir40a UTR_5_PRIME Ir40a
X	7614346	X_7614346_SNP [dm3] X_7720313_SNP [dm6]	C	G	2.894e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12803157	2R_12803157_SNP [dm3] 2R_16915652_SNP [dm6]	G	C	2.899e^-4	0.688	INTERGENIC
2R	19409956	2R_19409956_DEL [dm3] 2R_23522433_DEL [dm6]	GA	G	2.902e^-4	0.688	INTRON RabX1	TF binding site BDTNP1_TFBS_dl
X	13054147	X_13054147_SNP [dm3] X_13160114_SNP [dm6]	T	G	2.907e^-4	0.688	NON_SYNONYMOUS_CODING CG12096 UPSTREAM Bap60	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	26738760	3R_26738760_SNP [dm3] 3R_30913038_SNP [dm6]	T	C	2.907e^-4	0.688	UTR_5_PRIME Ptx1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1669112	2L_1669112_INS [dm3] 2L_1669112_INS [dm6]	T	TT	2.910e^-4	0.688	INTRON chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	8010476	3L_8010476_SNP [dm3] 3L_8017376_SNP [dm6]	T	A	2.912e^-4	0.688	INTRON nmo
3R	16673620	3R_16673620_SNP [dm3] 3R_20847898_SNP [dm6]	T	G	2.912e^-4	0.688	DOWNSTREAM CG15696 INTERGENIC
X	18642763	X_18642763_SNP [dm3] X_18748730_SNP [dm6]	G	A	2.928e^-4	0.688	UPSTREAM CG12609 INTERGENIC
2R	16905198	2R_16905198_INS [dm3] 2R_21017693_INS [dm6]	A	ACTTA	2.941e^-4	0.688	UPSTREAM RIC-3 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	8550006	X_8550006_SNP [dm3] X_8655973_SNP [dm6]	T	A	2.941e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	428712	2R_428712_SNP [dm3] 2R_4541207_SNP [dm6]	G	T	2.941e^-4	0.688	INTERGENIC	transposable element FlyBase
2R	5907946	2R_5907946_SNP [dm3] 2R_10020441_SNP [dm6]	G	A	2.948e^-4	0.688	INTRON Pka-R2
2R	19022314	2R_19022314_SNP [dm3] 2R_23134791_SNP [dm6]	G	T	2.956e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	4456754	3R_4456754_SNP [dm3] 3R_8631032_SNP [dm6]	A	T	2.956e^-4	0.688	INTERGENIC
3L	8988202	3L_8988202_SNP [dm3] 3L_8995102_SNP [dm6]	C	T	2.958e^-4	0.688	SYNONYMOUS_CODING smg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16576803	2R_16576803_SNP [dm3] 2R_20689298_SNP [dm6]	T	C	2.967e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8992180	3L_8992180_SNP [dm3] 3L_8999080_SNP [dm6]	G	C	2.967e^-4	0.688	NON_SYNONYMOUS_CODING CG5087	TF binding site mE1_TFBS_sens
3L	7596130	3L_7596130_SNP [dm3] 3L_7603030_SNP [dm6]	A	G	2.970e^-4	0.688	SYNONYMOUS_CODING CG33275
3R	13479417	3R_13479417_SNP [dm3] 3R_17653695_SNP [dm6]	G	T	2.971e^-4	0.688	UPSTREAM CR45223 INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6607697	X_6607697_SNP [dm3] X_6713664_SNP [dm6]	C	T	2.978e^-4	0.688	SYNONYMOUS_CODING CG14441
3R	25790988	3R_25790988_SNP [dm3] 3R_29965266_SNP [dm6]	T	A	2.989e^-4	0.688	INTRON TkR99D
3R	22268091	3R_22268091_SNP [dm3] 3R_26442369_SNP [dm6]	G	C	2.990e^-4	0.688	INTRON tx
3L	8466935	3L_8466935_SNP [dm3] 3L_8473835_SNP [dm6]	C	G	2.995e^-4	0.688	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16062752	3R_16062752_SNP [dm3] 3R_20237030_SNP [dm6]	T	A	2.999e^-4	0.688	INTRON Nlg4
2L	1189263	2L_1189263_INS [dm3] 2L_1189263_INS [dm6]	A	AGCA	3.005e^-4	0.688	INTRON CG5001
3R	16719862	3R_16719862_SNP [dm3] 3R_20894140_SNP [dm6]	G	A	3.012e^-4	0.688	UPSTREAM CR44947 DOWNSTREAM CG10830 INTERGENIC
2L	2837302	2L_2837302_SNP [dm3] 2L_2837302_SNP [dm6]	A	T	3.014e^-4	0.688	INTRON CG3119	TF binding site mE1_TFBS_cad
3R	26673129	3R_26673129_SNP [dm3] 3R_30847407_SNP [dm6]	A	G	3.020e^-4	0.688	INTERGENIC
2R	13669738	2R_13669738_INS [dm3] 2R_17782233_INS [dm6]	A	AG	3.020e^-4	0.688	UPSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8990357	3L_8990357_SNP [dm3] 3L_8997257_SNP [dm6]	C	T	3.025e^-4	0.688	UPSTREAM smg & 1 other INTRON smg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3R	23667873	3R_23667873_INS [dm3] 3R_27842151_INS [dm6]	G	GA	3.033e^-4	0.688	INTRON CG34353
3L	9555353	3L_9555353_SNP [dm3] 3L_9562253_SNP [dm6]	T	A	3.034e^-4	0.688	INTRON CG42673
X	5155639	X_5155639_SNP [dm3] X_5261606_SNP [dm6]	T	A	3.034e^-4	0.688	INTERGENIC
3L	1636595	3L_1636595_SNP [dm3] 3L_1636595_SNP [dm6]	C	T	3.039e^-4	0.688	INTRON nSyb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	19110031	2R_19110031_SNP [dm3] 2R_23222508_SNP [dm6]	C	T	3.040e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1017961	3L_1017961_SNP [dm3] 3L_1017961_SNP [dm6]	G	T	3.042e^-4	0.688	INTRON trio
2L	1585350	2L_1585350_SNP [dm3] 2L_1585350_SNP [dm6]	A	G	3.045e^-4	0.688	SYNONYMOUS_CODING CG10869 INTRON haf	TF binding site mE1_TFBS_sens
2L	9728667	2L_9728667_SNP [dm3] 2L_9728667_SNP [dm6]	T	C	3.054e^-4	0.688	INTRON Nckx30C
X	20347646	X_20347646_SNP [dm3] X_20476619_SNP [dm6]	G	T	3.066e^-4	0.688	NON_SYNONYMOUS_CODING RhoGAP19D
3L	1689962	3L_1689962_SNP [dm3] 3L_1689962_SNP [dm6]	G	T	3.074e^-4	0.688	INTRON CG7991
3L	1896020	3L_1896020_SNP [dm3] 3L_1896020_SNP [dm6]	T	A	3.075e^-4	0.688	INTRON CG1887	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3L	8237195	3L_8237195_SNP [dm3] 3L_8244095_SNP [dm6]	G	C	3.079e^-4	0.688	INTRON Dscam4
3R	15429801	3R_15429801_SNP [dm3] 3R_19604079_SNP [dm6]	G	A	3.081e^-4	0.688	UTR_5_PRIME CG7342
X	18642663	X_18642663_SNP [dm3] X_18748630_SNP [dm6]	C	G	3.082e^-4	0.688	UPSTREAM CG12609 INTERGENIC
3R	16730907	3R_16730907_SNP [dm3] 3R_20905185_SNP [dm6]	A	C	3.085e^-4	0.688	NON_SYNONYMOUS_CODING TotX INTRON CG5621
X	10512188	X_10512188_SNP [dm3] X_10618155_SNP [dm6]	A	G	3.099e^-4	0.688	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17673274	3L_17673274_SNP [dm3] 3L_17680174_SNP [dm6]	A	T	3.100e^-4	0.688	INTRON CG34251
3R	25114789	3R_25114789_SNP [dm3] 3R_29289067_SNP [dm6]	C	T	3.103e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8986045	3L_8986045_SNP [dm3] 3L_8992945_SNP [dm6]	T	C	3.104e^-4	0.688	SYNONYMOUS_CODING smg
3R	17090555	3R_17090555_SNP [dm3] 3R_21264833_SNP [dm6]	G	C	3.107e^-4	0.688	SYNONYMOUS_CODING ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16852794	2R_16852794_SNP [dm3] 2R_20965289_SNP [dm6]	G	A	3.108e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6667377	3R_6667377_SNP [dm3] 3R_10841655_SNP [dm6]	C	A	3.112e^-4	0.688	INTRON Cad86C
2R	13669796	2R_13669796_SNP [dm3] 2R_17782291_SNP [dm6]	C	T	3.117e^-4	0.688	UPSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11450502	3L_11450502_SNP [dm3] 3L_11457402_SNP [dm6]	A	G	3.120e^-4	0.688	SYNONYMOUS_CODING CG12289	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1021877	3L_1021877_SNP [dm3] 3L_1021877_SNP [dm6]	G	C	3.121e^-4	0.688	INTRON trio
3R	22713571	3R_22713571_SNP [dm3] 3R_26887849_SNP [dm6]	C	T	3.125e^-4	0.688	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6844518	2R_6844518_SNP [dm3] 2R_10957013_SNP [dm6]	A	C	3.130e^-4	0.688	INTERGENIC
2R	18368812	2R_18368812_SNP [dm3] 2R_22481307_SNP [dm6]	C	T	3.131e^-4	0.688	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2613218	X_2613218_SNP [dm3] X_2719185_SNP [dm6]	T	C	3.133e^-4	0.688	SYNONYMOUS_CODING CG2701	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6828815	2R_6828815_SNP [dm3] 2R_10941310_SNP [dm6]	T	A	3.146e^-4	0.688	SYNONYMOUS_CODING Spn47C
3L	2483802	3L_2483802_SNP [dm3] 3L_2483802_SNP [dm6]	C	G	3.148e^-4	0.688	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	3932389	3L_3932389_DEL [dm3] 3L_3932389_DEL [dm6]	TACAT	T	3.149e^-4	0.688	INTRON Eip63F-1
2L	8837805	2L_8837805_SNP [dm3] 2L_8837805_SNP [dm6]	A	G	3.149e^-4	0.688	INTERGENIC
3L	9295717	3L_9295717_SNP [dm3] 3L_9302617_SNP [dm6]	T	C	3.153e^-4	0.688	INTERGENIC
3L	6200438	3L_6200438_SNP [dm3] 3L_6207338_SNP [dm6]	A	G	3.159e^-4	0.688	SYNONYMOUS_CODING LanA	TF binding site mE1_TFBS_cad
3L	14109036	3L_14109036_SNP [dm3] 3L_14115936_SNP [dm6]	A	T	3.159e^-4	0.688	INTRON Sox21b
2R	9924063	2R_9924063_SNP [dm3] 2R_14036558_SNP [dm6]	A	G	3.161e^-4	0.688	INTRON mam	TF binding site BDTNP1_TFBS_dl
3L	5705234	3L_5705234_SNP [dm3] 3L_5712134_SNP [dm6]	C	T	3.162e^-4	0.688	INTRON sif	TF binding site mE1_TFBS_chinmo
2L	7522956	2L_7522956_SNP [dm3] 2L_7522956_SNP [dm6]	C	T	3.167e^-4	0.688	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18216690	3L_18216690_INS [dm3] 3L_18223590_INS [dm6]	A	ATA	3.171e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_inv
2R	13669753	2R_13669753_SNP [dm3] 2R_17782248_SNP [dm6]	T	G	3.174e^-4	0.688	UPSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19945006	3R_19945006_SNP [dm3] 3R_24119284_SNP [dm6]	A	G	3.174e^-4	0.688	INTRON Rootletin
3R	2893987	3R_2893987_SNP [dm3] 3R_7068265_SNP [dm6]	T	G	3.180e^-4	0.688	INTRON CG1965
3L	18130381	3L_18130381_SNP [dm3] 3L_18137281_SNP [dm6]	A	G	3.189e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	14894805	2L_14894805_SNP [dm3] 2L_14894805_SNP [dm6]	T	C	3.192e^-4	0.688	INTERGENIC
3L	8473458	3L_8473458_SNP [dm3] 3L_8480358_SNP [dm6]	G	A	3.194e^-4	0.688	SYNONYMOUS_CODING CG43163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	1647158	3L_1647158_SNP [dm3] 3L_1647158_SNP [dm6]	T	C	3.204e^-4	0.688	SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	12366207	2R_12366207_SNP [dm3] 2R_16478702_SNP [dm6]	C	T	3.206e^-4	0.688	INTERGENIC
2L	683550	2L_683550_SNP [dm3] 2L_683550_SNP [dm6]	A	T	3.208e^-4	0.688	INTRON ds
2L	9858208	2L_9858208_SNP [dm3] 2L_9858208_SNP [dm6]	T	A	3.209e^-4	0.688	INTRON nAChRalpha6
3R	2894052	3R_2894052_SNP [dm3] 3R_7068330_SNP [dm6]	G	A	3.210e^-4	0.688	INTRON CG1965
3R	17195413	3R_17195413_SNP [dm3] 3R_21369691_SNP [dm6]	G	A	3.214e^-4	0.688	SYNONYMOUS_CODING pre-mod_mdg4_-U DOWNSTREAM mod_mdg4_ & 2 others INTRON mod_mdg4_
2R	3221641	2R_3221641_SNP [dm3] 2R_7334136_SNP [dm6]	T	C	3.219e^-4	0.688	INTRON Dscam1 & 1 other	TF binding site mE1_TFBS_chinmo
3R	16194137	3R_16194137_SNP [dm3] 3R_20368415_SNP [dm6]	C	T	3.230e^-4	0.688	INTERGENIC
X	21856478	X_21856478_SNP [dm3] X_22454642_SNP [dm6]	A	T	3.231e^-4	0.688	INTRON wap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	17393334	2L_17393334_SNP [dm3] 2L_17393334_SNP [dm6]	G	A	3.232e^-4	0.688	INTRON CLIP-190
3R	10290287	3R_10290287_SNP [dm3] 3R_14464565_SNP [dm6]	T	A	3.234e^-4	0.688	INTRON cv-c
3R	10079154	3R_10079154_INS [dm3] 3R_14253432_INS [dm6]	T	TCT	3.235e^-4	0.688	INTRON Aats-met
3L	3220853	3L_3220853_INS [dm3] 3L_3220853_INS [dm6]	C	CTC	3.236e^-4	0.688	UTR_3_PRIME CG12034 DOWNSTREAM RpL28 & 2 others	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
2R	18272144	2R_18272144_SNP [dm3] 2R_22384639_SNP [dm6]	A	C	3.238e^-4	0.688	INTRON CG13506	TF binding site mE1_TFBS_Trl
2R	12283455	2R_12283455_SNP [dm3] 2R_16395950_SNP [dm6]	C	T	3.239e^-4	0.688	INTRON Sema-2b	TF binding site mE1_TFBS_inv
3R	22552472	3R_22552472_INS [dm3] 3R_26726750_INS [dm6]	A	AAAGT	3.243e^-4	0.688	UPSTREAM CG14246 DOWNSTREAM CG14244 INTERGENIC
2R	450712	2R_450712_SNP [dm3] 2R_4563207_SNP [dm6]	A	G	3.244e^-4	0.688	INTRON Stlk
3R	14959125	3R_14959125_SNP [dm3] 3R_19133403_SNP [dm6]	A	C	3.246e^-4	0.688	INTRON Cyp12a5
3L	10820424	3L_10820424_DEL [dm3] 3L_10827324_DEL [dm6]	GTGTGTG	G	3.266e^-4	0.688	INTERGENIC
3L	843266	3L_843266_SNP [dm3] 3L_843266_SNP [dm6]	C	T	3.267e^-4	0.688	SYNONYMOUS_CODING Gr61a UTR_3_PRIME Gr61a UPSTREAM CG13889
2L	9852854	2L_9852854_SNP [dm3] 2L_9852854_SNP [dm6]	G	C	3.276e^-4	0.688	INTRON nAChRalpha6
2L	2618219	2L_2618219_DEL [dm3] 2L_2618219_DEL [dm6]	GGATGGCTGG	G	3.280e^-4	0.688	INTERGENIC
2R	15183087	2R_15183087_SNP [dm3] 2R_19295582_SNP [dm6]	T	C	3.281e^-4	0.688	INTRON Tab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	15670969	3L_15670969_SNP [dm3] 3L_15677869_SNP [dm6]	C	T	3.282e^-4	0.688	INTERGENIC
3L	8989751	3L_8989751_SNP [dm3] 3L_8996651_SNP [dm6]	T	A	3.294e^-4	0.688	UPSTREAM smg INTRON smg	TF binding site BDTNP1_TFBS_dl
3R	17200389	3R_17200389_SNP [dm3] 3R_21374667_SNP [dm6]	C	T	3.308e^-4	0.688	INTRON mod_mdg4_	TF binding site mE1_TFBS_sens
2L	1567921	2L_1567921_SNP [dm3] 2L_1567921_SNP [dm6]	A	T	3.311e^-4	0.688	INTRON haf
2R	13669842	2R_13669842_SNP [dm3] 2R_17782337_SNP [dm6]	T	G	3.311e^-4	0.688	UPSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	15216562	2R_15216562_SNP [dm3] 2R_19329057_SNP [dm6]	G	T	3.318e^-4	0.688	NON_SYNONYMOUS_CODING Rgk1	TF binding site mE1_TFBS_inv
3R	9352318	3R_9352318_SNP [dm3] 3R_13526596_SNP [dm6]	T	C	3.319e^-4	0.688	INTERGENIC
2R	19108870	2R_19108870_SNP [dm3] 2R_23221347_SNP [dm6]	T	C	3.326e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19945002	3R_19945002_SNP [dm3] 3R_24119280_SNP [dm6]	C	A	3.326e^-4	0.688	INTRON Rootletin
2L	14895010	2L_14895010_SNP [dm3] 2L_14895010_SNP [dm6]	T	C	3.327e^-4	0.688	INTERGENIC
X	21856581	X_21856581_SNP [dm3] X_22454745_SNP [dm6]	T	G	3.337e^-4	0.688	UTR_5_PRIME wap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	4046128	2L_4046128_SNP [dm3] 2L_4046128_SNP [dm6]	A	C	3.341e^-4	0.688	INTRON ed	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17692759	3R_17692759_SNP [dm3] 3R_21867037_SNP [dm6]	G	A	3.346e^-4	0.688	SYNONYMOUS_CODING CG6569 UTR_3_PRIME CG6569 UPSTREAM Cby DOWNSTREAM lsn
2R	472382	2R_472382_SNP [dm3] 2R_4584877_SNP [dm6]	G	A	3.348e^-4	0.688	INTERGENIC	transposable element FlyBase
X	14755807	X_14755807_SNP [dm3] X_14861774_SNP [dm6]	C	T	3.349e^-4	0.688	INTRON Flo2
X	18644659	X_18644659_SNP [dm3] X_18750626_SNP [dm6]	T	G	3.361e^-4	0.688	INTERGENIC
X	20359014	X_20359014_DEL [dm3] X_20487987_DEL [dm6]	AG	A	3.365e^-4	0.688	INTRON RhoGAP19D
3R	27169035	3R_27169035_SNP [dm3] 3R_31343313_SNP [dm6]	A	C	3.367e^-4	0.688	INTRON CG34347
3L	947858	3L_947858_SNP [dm3] 3L_947858_SNP [dm6]	C	T	3.368e^-4	0.688	INTRON Glut1
X	15294646	X_15294646_SNP [dm3] X_15400613_SNP [dm6]	T	C	3.370e^-4	0.688	INTRON Cngl
3R	9301644	3R_9301644_SNP [dm3] 3R_13475922_SNP [dm6]	T	C	3.382e^-4	0.688	INTERGENIC
2R	16881559	2R_16881559_SNP [dm3] 2R_20994054_SNP [dm6]	G	A	3.384e^-4	0.688	SYNONYMOUS_CODING dgt3 UPSTREAM Prosalpha3	TF binding site mE1_TFBS_sens
3L	2097030	3L_2097030_SNP [dm3] 3L_2097030_SNP [dm6]	C	T	3.389e^-4	0.688	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad
3L	2097099	3L_2097099_SNP [dm3] 3L_2097099_SNP [dm6]	G	A	3.389e^-4	0.688	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad
3L	10065214	3L_10065214_INS [dm3] 3L_10072114_INS [dm6]	T	TATGT	3.396e^-4	0.688	DOWNSTREAM dpr6 INTRON dpr6
X	6436052	X_6436052_SNP [dm3] X_6542019_SNP [dm6]	C	T	3.401e^-4	0.688	INTRON CG34417
2L	9858071	2L_9858071_SNP [dm3] 2L_9858071_SNP [dm6]	T	G	3.409e^-4	0.688	INTRON nAChRalpha6
X	10210786	X_10210786_SNP [dm3] X_10316753_SNP [dm6]	A	T	3.424e^-4	0.688	INTRON alpha-Man-I
3L	6987201	3L_6987201_SNP [dm3] 3L_6994101_SNP [dm6]	T	C	3.425e^-4	0.688	SYNONYMOUS_CODING bin	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9537917	3L_9537917_SNP [dm3] 3L_9544817_SNP [dm6]	A	G	3.427e^-4	0.688	UPSTREAM Ir67a INTERGENIC
3L	6483553	3L_6483553_SNP [dm3] 3L_6490453_SNP [dm6]	C	T	3.428e^-4	0.688	SYNONYMOUS_CODING CG8270 DOWNSTREAM CG10144
2R	6844534	2R_6844534_SNP [dm3] 2R_10957029_SNP [dm6]	C	A	3.429e^-4	0.688	INTERGENIC
3R	2542715	3R_2542715_SNP [dm3] 3R_6716993_SNP [dm6]	A	T	3.430e^-4	0.688	INTRON pb	regulatory region REDfly_CRMs
3L	9744948	3L_9744948_SNP [dm3] 3L_9751848_SNP [dm6]	T	G	3.430e^-4	0.688	UPSTREAM CG42268 INTRON CG42268	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	17240055	2R_17240055_DEL [dm3] 2R_21352550_DEL [dm6]	AGACCATTACAT...	A	3.433e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15493042	X_15493042_SNP [dm3] X_15599009_SNP [dm6]	T	C	3.445e^-4	0.688	INTERGENIC
3R	6667394	3R_6667394_SNP [dm3] 3R_10841672_SNP [dm6]	C	T	3.448e^-4	0.688	INTRON Cad86C
2R	17419153	2R_17419153_DEL [dm3] 2R_21531648_DEL [dm6]	ATA	A	3.453e^-4	0.688	INTRON Egfr EXON CR44725
X	20431701	X_20431701_SNP [dm3] X_20560674_SNP [dm6]	A	C	3.458e^-4	0.688	INTRON RunxB
3R	21298022	3R_21298022_SNP [dm3] 3R_25472300_SNP [dm6]	A	G	3.459e^-4	0.688	INTRON Fur1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14999390	2R_14999390_SNP [dm3] 2R_19111885_SNP [dm6]	T	C	3.460e^-4	0.688	INTRON 5-HT1A	TF binding site BDTNP1_TFBS_twi
3R	21296405	3R_21296405_SNP [dm3] 3R_25470683_SNP [dm6]	C	T	3.463e^-4	0.688	INTRON Fur1	TF binding site BDTNP1_TFBS_twi
3R	2899616	3R_2899616_SNP [dm3] 3R_7073894_SNP [dm6]	A	G	3.467e^-4	0.688	SYNONYMOUS_CODING CG1104 UPSTREAM CG1943	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	947641	3L_947641_INS [dm3] 3L_947641_INS [dm6]	A	AGTAGACGATGAAGCATATA...	3.469e^-4	0.688	INTRON Glut1
2R	16777983	2R_16777983_SNP [dm3] 2R_20890478_SNP [dm6]	A	G	3.470e^-4	0.688	INTRON otp	TF binding site mE1_TFBS_chinmo
3R	23761494	3R_23761494_SNP [dm3] 3R_27935772_SNP [dm6]	C	T	3.470e^-4	0.688	NON_SYNONYMOUS_CODING Mes-4	TF binding site mE1_TFBS_chinmo
3L	10737194	3L_10737194_SNP [dm3] 3L_10744094_SNP [dm6]	T	A	3.471e^-4	0.688	INTERGENIC
3R	10532112	3R_10532112_SNP [dm3] 3R_14706390_SNP [dm6]	A	T	3.474e^-4	0.688	INTRON kibra
X	15467078	X_15467078_SNP [dm3] X_15573045_SNP [dm6]	A	G	3.474e^-4	0.688	NON_SYNONYMOUS_CODING CG9213 UPSTREAM CG15643	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7229331	3L_7229331_SNP [dm3] 3L_7236231_SNP [dm6]	C	T	3.476e^-4	0.688	DOWNSTREAM CG14826 & 1 other INTERGENIC
3L	965089	3L_965089_SNP [dm3] 3L_965089_SNP [dm6]	C	T	3.481e^-4	0.688	INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18207776	X_18207776_SNP [dm3] X_18313743_SNP [dm6]	C	A	3.484e^-4	0.688	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	7039334	3L_7039334_SNP [dm3] 3L_7046234_SNP [dm6]	A	G	3.491e^-4	0.688	INTRON Mp
2R	6922721	2R_6922721_SNP [dm3] 2R_11035216_SNP [dm6]	A	T	3.492e^-4	0.688	INTRON luna	TF binding site mE1_TFBS_cad
X	5475941	X_5475941_SNP [dm3] X_5581908_SNP [dm6]	T	A	3.494e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4701574	3R_4701574_SNP [dm3] 3R_8875852_SNP [dm6]	A	T	3.497e^-4	0.688	INTRON pyd
3R	26520000	3R_26520000_SNP [dm3] 3R_30694278_SNP [dm6]	G	A	3.497e^-4	0.688	SYNONYMOUS_CODING CG12069
3L	2485006	3L_2485006_SNP [dm3] 3L_2485006_SNP [dm6]	G	A	3.499e^-4	0.688	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	22004374	X_22004374_SNP [dm3] X_22602538_SNP [dm6]	A	C	3.500e^-4	0.688	INTRON Cda4
2R	17102503	2R_17102503_SNP [dm3] 2R_21214998_SNP [dm6]	G	C	3.500e^-4	0.688	UPSTREAM CG4302 DOWNSTREAM CG15661 INTERGENIC
3L	18506110	3L_18506110_DEL [dm3] 3L_18513010_DEL [dm6]	TTTGGTGTGCCCCTAAGT...	T	3.501e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	7900587	2L_7900587_DEL [dm3] 2L_7900587_DEL [dm6]	GG	G	3.502e^-4	0.688	INTRON Snoo
X	4273590	X_4273590_SNP [dm3] X_4379557_SNP [dm6]	A	G	3.503e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_sens
2L	1584813	2L_1584813_DEL [dm3] 2L_1584813_DEL [dm6]	CATAC	C	3.506e^-4	0.688	DOWNSTREAM CG10869 INTRON haf
3R	15191531	3R_15191531_SNP [dm3] 3R_19365809_SNP [dm6]	G	C	3.506e^-4	0.688	INTERGENIC
3R	13344808	3R_13344808_SNP [dm3] 3R_17519086_SNP [dm6]	T	C	3.508e^-4	0.688	UPSTREAM CR44349 INTERGENIC
2L	7391615	2L_7391615_SNP [dm3] 2L_7391615_SNP [dm6]	A	G	3.510e^-4	0.688	DOWNSTREAM gudu INTRON CG5160
2L	7900509	2L_7900509_SNP [dm3] 2L_7900509_SNP [dm6]	A	C	3.511e^-4	0.688	INTRON Snoo
3L	2513471	3L_2513471_SNP [dm3] 3L_2513471_SNP [dm6]	G	C	3.511e^-4	0.688	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19169959	X_19169959_DEL [dm3] X_19275926_DEL [dm6]	TT	T	3.512e^-4	0.688	UPSTREAM CG32537 INTRON CG32537 & 1 other
3R	16726496	3R_16726496_SNP [dm3] 3R_20900774_SNP [dm6]	C	T	3.514e^-4	0.688	INTERGENIC
3R	16726497	3R_16726497_SNP [dm3] 3R_20900775_SNP [dm6]	G	A	3.514e^-4	0.688	INTERGENIC
3R	16726516	3R_16726516_SNP [dm3] 3R_20900794_SNP [dm6]	C	T	3.514e^-4	0.688	INTERGENIC
3R	22011214	3R_22011214_SNP [dm3] 3R_26185492_SNP [dm6]	G	C	3.514e^-4	0.688	UTR_5_PRIME CG31086 UTR_3_PRIME CG31323 UPSTREAM CG31086 DOWNSTREAM CG31323
3L	14960014	3L_14960014_SNP [dm3] 3L_14966914_SNP [dm6]	C	A	3.516e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21244565	3L_21244565_SNP [dm3] 3L_21251465_SNP [dm6]	A	T	3.519e^-4	0.688	INTRON Eip78C
3R	15217020	3R_15217020_SNP [dm3] 3R_19391298_SNP [dm6]	G	C	3.520e^-4	0.688	SYNONYMOUS_CODING CG18493 INTRON Ino80	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10290301	3R_10290301_SNP [dm3] 3R_14464579_SNP [dm6]	A	G	3.520e^-4	0.688	INTRON cv-c
2R	6660950	2R_6660950_DEL [dm3] 2R_10773445_DEL [dm6]	CGCTGCCCATCCTCTGCTCC...	C	3.523e^-4	0.688	INTRON CG33144
X	15467254	X_15467254_SNP [dm3] X_15573221_SNP [dm6]	T	C	3.525e^-4	0.688	SYNONYMOUS_CODING CG9213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2020085	2L_2020085_SNP [dm3] 2L_2020085_SNP [dm6]	G	C	3.527e^-4	0.688	INTRON CG4238
3R	16348983	3R_16348983_INS [dm3] 3R_20523261_INS [dm6]	C	CTAAAAAATAGG...	3.529e^-4	0.688	INTERGENIC
2L	9250928	2L_9250928_SNP [dm3] 2L_9250928_SNP [dm6]	T	G	3.531e^-4	0.688	NON_SYNONYMOUS_CODING aust DOWNSTREAM CR43734 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13838431	3L_13838431_SNP [dm3] 3L_13845331_SNP [dm6]	C	A	3.531e^-4	0.688	UPSTREAM Hml DOWNSTREAM Tsp68C INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_run
2R	14582539	2R_14582539_SNP [dm3] 2R_18695034_SNP [dm6]	G	T	3.535e^-4	0.688	INTRON Sik3	TF binding site BDTNP1_TFBS_dl
3L	12141373	3L_12141373_DEL [dm3] 3L_12148273_DEL [dm6]	CCT	C	3.535e^-4	0.688	UPSTREAM eap INTRON Nrx-IV	TF binding site BDTNP1_TFBS_dl
3L	12141384	3L_12141384_SNP [dm3] 3L_12148284_SNP [dm6]	T	A	3.535e^-4	0.688	UPSTREAM eap INTRON Nrx-IV
3L	12141385	3L_12141385_SNP [dm3] 3L_12148285_SNP [dm6]	A	G	3.535e^-4	0.688	UPSTREAM eap INTRON Nrx-IV
2R	18620966	2R_18620966_SNP [dm3] 2R_22733461_SNP [dm6]	A	T	3.536e^-4	0.688	INTRON jbug	TF binding site mE1_TFBS_chinmo
3L	13838204	3L_13838204_SNP [dm3] 3L_13845104_SNP [dm6]	A	C	3.537e^-4	0.688	UTR_3_PRIME Tsp68C UPSTREAM Hml	TF binding site mE1_TFBS_bab1
2L	7902490	2L_7902490_SNP [dm3] 2L_7902490_SNP [dm6]	A	C	3.539e^-4	0.688	INTRON Snoo
2R	13689654	2R_13689654_SNP [dm3] 2R_17802149_SNP [dm6]	C	T	3.542e^-4	0.688	UTR_5_PRIME grh UPSTREAM grh & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3R	26686990	3R_26686990_SNP [dm3] 3R_30861268_SNP [dm6]	G	A	3.546e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13673782	2R_13673782_SNP [dm3] 2R_17786277_SNP [dm6]	T	G	3.553e^-4	0.688	INTRON aft
3L	951870	3L_951870_SNP [dm3] 3L_951870_SNP [dm6]	T	A	3.563e^-4	0.688	INTRON Glut1
2R	14448767	2R_14448767_SNP [dm3] 2R_18561262_SNP [dm6]	C	T	3.566e^-4	0.688	INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	17239303	2R_17239303_SNP [dm3] 2R_21351798_SNP [dm6]	T	A	3.567e^-4	0.688	INTERGENIC
3R	23827904	3R_23827904_SNP [dm3] 3R_28002182_SNP [dm6]	T	G	3.568e^-4	0.688	INTERGENIC
3L	20603681	3L_20603681_SNP [dm3] 3L_20610581_SNP [dm6]	T	A	3.581e^-4	0.688	INTRON knrl
3L	20610814	3L_20610814_SNP [dm3] 3L_20617714_SNP [dm6]	G	A	3.581e^-4	0.688	INTRON knrl
3L	9284033	3L_9284033_SNP [dm3] 3L_9290933_SNP [dm6]	G	T	3.582e^-4	0.688	INTERGENIC
3L	9284057	3L_9284057_MNP [dm3] 3L_9290957_MNP [dm6]	ACC	CAA	3.582e^-4	0.688	INTERGENIC
2L	1574985	2L_1574985_SNP [dm3] 2L_1574985_SNP [dm6]	C	G	3.582e^-4	0.688	INTRON haf
X	14990175	X_14990175_INS [dm3] X_15096142_INS [dm6]	T	TAAACGTA	3.595e^-4	0.688	UPSTREAM CG9072 INTRON Rab3-GEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19262591	3R_19262591_SNP [dm3] 3R_23436869_SNP [dm6]	G	T	3.601e^-4	0.688	INTRON CG4374
3R	21689318	3R_21689318_SNP [dm3] 3R_25863596_SNP [dm6]	T	C	3.603e^-4	0.688	INTRON CG5890
2R	18005514	2R_18005514_SNP [dm3] 2R_22118009_SNP [dm6]	C	A	3.604e^-4	0.688	INTRON Vrp1
3L	4729578	3L_4729578_DEL [dm3] 3L_4729578_DEL [dm6]	TT	T	3.605e^-4	0.688	INTRON RhoGEF64C
3L	10823803	3L_10823803_SNP [dm3] 3L_10830703_SNP [dm6]	C	T	3.608e^-4	0.688	INTERGENIC
3R	21833465	3R_21833465_SNP [dm3] 3R_26007743_SNP [dm6]	C	T	3.616e^-4	0.688	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17531383	3R_17531383_SNP [dm3] 3R_21705661_SNP [dm6]	T	C	3.619e^-4	0.688	INTRON CG31176
3L	914760	3L_914760_SNP [dm3] 3L_914760_SNP [dm6]	A	T	3.621e^-4	0.688	INTRON Glut1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12285146	2R_12285146_SNP [dm3] 2R_16397641_SNP [dm6]	G	A	3.623e^-4	0.688	INTRON Sema-2b
2L	3732301	2L_3732301_SNP [dm3] 2L_3732301_SNP [dm6]	C	T	3.628e^-4	0.688	INTRON CG10019
X	21856623	X_21856623_SNP [dm3] X_22454787_SNP [dm6]	T	C	3.636e^-4	0.688	UTR_5_PRIME wap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	2440567	3R_2440567_SNP [dm3] 3R_6614845_SNP [dm6]	C	A	3.638e^-4	0.688	INTERGENIC
3L	6179586	3L_6179586_SNP [dm3] 3L_6186486_SNP [dm6]	C	T	3.643e^-4	0.688	SYNONYMOUS_CODING D19A DOWNSTREAM CG43293	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2269654	3R_2269654_SNP [dm3] 3R_6443932_SNP [dm6]	C	A	3.644e^-4	0.688	NON_SYNONYMOUS_CODING gpp
X	15792267	X_15792267_SNP [dm3] X_15898234_SNP [dm6]	A	G	3.647e^-4	0.688	INTRON shi
X	8428265	X_8428265_SNP [dm3] X_8534232_SNP [dm6]	C	G	3.650e^-4	0.688	INTRON Nrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7017443	2L_7017443_SNP [dm3] 2L_7017443_SNP [dm6]	T	C	3.651e^-4	0.688	SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo
X	20431774	X_20431774_SNP [dm3] X_20560747_SNP [dm6]	T	C	3.662e^-4	0.688	INTRON RunxB
3L	3049648	3L_3049648_SNP [dm3] 3L_3049648_SNP [dm6]	C	T	3.669e^-4	0.688	SYNONYMOUS_CODING Sk2 UPSTREAM CG32485	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5175514	3L_5175514_SNP [dm3] 3L_5182414_SNP [dm6]	G	A	3.678e^-4	0.688	INTRON shep
2R	6295920	2R_6295920_SNP [dm3] 2R_10408415_SNP [dm6]	T	C	3.678e^-4	0.688	UPSTREAM CG12898 DOWNSTREAM CG43177 & 1 other INTRON CG42732
3R	9683309	3R_9683309_SNP [dm3] 3R_13857587_SNP [dm6]	G	T	3.682e^-4	0.688	INTERGENIC
3L	2513370	3L_2513370_SNP [dm3] 3L_2513370_SNP [dm6]	G	C	3.682e^-4	0.688	NON_SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2842394	3L_2842394_DEL [dm3] 3L_2842394_DEL [dm6]	GG	G	3.684e^-4	0.688	INTRON CG43444
2L	905202	2L_905202_SNP [dm3] 2L_905202_SNP [dm6]	C	T	3.685e^-4	0.688	DOWNSTREAM CR45261 INTERGENIC
X	19316908	X_19316908_SNP [dm3] X_19422875_SNP [dm6]	T	A	3.686e^-4	0.688	INTRON kek5
2R	19948221	2R_19948221_SNP [dm3] 2R_24060698_SNP [dm6]	A	T	3.698e^-4	0.688	SYNONYMOUS_CODING RpL12 UPSTREAM CR44814	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	7017431	2L_7017431_SNP [dm3] 2L_7017431_SNP [dm6]	A	T	3.698e^-4	0.688	SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo
2R	9450556	2R_9450556_SNP [dm3] 2R_13563051_SNP [dm6]	C	T	3.700e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1

By genomic position
Variant impact
Gene name

Week 2 mean ascension (cm) phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results