DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.404e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2439 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	18573438	2R_18573438_DEL [dm3] 2R_22685933_DEL [dm6]	TATT	T	1.097e^-6	0.715	UTR_3_PRIME ppa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17673148	3L_17673148_SNP [dm3] 3L_17680048_SNP [dm6]	A	C	1.484e^-6	0.715	INTRON CG34251
3L	5314708	3L_5314708_SNP [dm3] 3L_5321608_SNP [dm6]	A	G	2.085e^-6	0.715	INTERGENIC
3L	18580888	3L_18580888_SNP [dm3] 3L_18587788_SNP [dm6]	C	G	2.127e^-6	0.715	UPSTREAM CG7271 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20347612	X_20347612_SNP [dm3] X_20476585_SNP [dm6]	T	A	2.383e^-6	0.715	SYNONYMOUS_CODING RhoGAP19D	TF binding site mE1_TFBS_cad
X	20347646	X_20347646_SNP [dm3] X_20476619_SNP [dm6]	G	T	2.821e^-6	0.715	NON_SYNONYMOUS_CODING RhoGAP19D
3L	17673261	3L_17673261_SNP [dm3] 3L_17680161_SNP [dm6]	C	T	4.197e^-6	0.715	INTRON CG34251
3L	10973350	3L_10973350_SNP [dm3] 3L_10980250_SNP [dm6]	G	A	5.608e^-6	0.715	DOWNSTREAM klu INTERGENIC
2L	2837302	2L_2837302_SNP [dm3] 2L_2837302_SNP [dm6]	A	T	5.775e^-6	0.715	INTRON CG3119	TF binding site mE1_TFBS_cad
3R	7162882	3R_7162882_DEL [dm3] 3R_11337160_DEL [dm6]	AA	A	5.802e^-6	0.715	INTRON pros
2L	14094485	2L_14094485_SNP [dm3] 2L_14094485_SNP [dm6]	A	T	6.226e^-6	0.715	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	9419701	3R_9419701_DEL [dm3] 3R_13593979_DEL [dm6]	CC	C	6.821e^-6	0.715	INTERGENIC
3R	13975813	3R_13975813_SNP [dm3] 3R_18150091_SNP [dm6]	G	A	7.918e^-6	0.715	INTERGENIC
3R	8706189	3R_8706189_SNP [dm3] 3R_12880467_SNP [dm6]	G	A	8.155e^-6	0.715	INTERGENIC
3L	17673274	3L_17673274_SNP [dm3] 3L_17680174_SNP [dm6]	A	T	8.295e^-6	0.715	INTRON CG34251
2L	515323	2L_515323_SNP [dm3] 2L_515323_SNP [dm6]	C	T	9.592e^-6	0.715	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17673238	3L_17673238_SNP [dm3] 3L_17680138_SNP [dm6]	T	A	1.016e^-5	0.715	INTRON CG34251
X	6613900	X_6613900_SNP [dm3] X_6719867_SNP [dm6]	A	T	1.021e^-5	0.715	DOWNSTREAM CG3168 & 1 other INTERGENIC
3L	18216758	3L_18216758_SNP [dm3] 3L_18223658_SNP [dm6]	T	G	1.078e^-5	0.715	INTERGENIC	TF binding site mE1_TFBS_inv
2R	13536013	2R_13536013_SNP [dm3] 2R_17648508_SNP [dm6]	T	A	1.140e^-5	0.715	INTRON CCHa1-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17672981	3L_17672981_SNP [dm3] 3L_17679881_SNP [dm6]	A	G	1.191e^-5	0.715	INTRON CG34251
3L	6179603	3L_6179603_SNP [dm3] 3L_6186503_SNP [dm6]	G	A	1.447e^-5	0.715	SYNONYMOUS_CODING D19A DOWNSTREAM CG43293	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20358965	X_20358965_SNP [dm3] X_20487938_SNP [dm6]	T	A	1.483e^-5	0.715	INTRON RhoGAP19D
3L	1022063	3L_1022063_SNP [dm3] 3L_1022063_SNP [dm6]	T	C	1.493e^-5	0.715	INTRON trio
X	10459204	X_10459204_SNP [dm3] X_10565171_SNP [dm6]	T	A	1.530e^-5	0.715	DOWNSTREAM CG15296 INTRON spri
2R	4240861	2R_4240861_SNP [dm3] 2R_8353356_SNP [dm6]	A	T	1.553e^-5	0.715	INTRON pdm3
3L	18580751	3L_18580751_SNP [dm3] 3L_18587651_SNP [dm6]	A	G	1.562e^-5	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	1542966	X_1542966_SNP [dm3] X_1648933_SNP [dm6]	G	T	1.626e^-5	0.715	NON_SYNONYMOUS_CODING br UTR_3_PRIME br INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10776466	3L_10776466_SNP [dm3] 3L_10783366_SNP [dm6]	T	C	1.636e^-5	0.715	INTERGENIC
3R	22713569	3R_22713569_SNP [dm3] 3R_26887847_SNP [dm6]	T	C	1.674e^-5	0.715	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4611688	2L_4611688_SNP [dm3] 2L_4611688_SNP [dm6]	A	G	1.687e^-5	0.715	INTRON dp	TF binding site mE1_TFBS_kn
3L	7596387	3L_7596387_SNP [dm3] 3L_7603287_SNP [dm6]	C	G	1.724e^-5	0.715	NON_SYNONYMOUS_CODING CG33275
2L	1234517	2L_1234517_SNP [dm3] 2L_1234517_SNP [dm6]	G	A	1.744e^-5	0.715	INTERGENIC
3R	8884563	3R_8884563_SNP [dm3] 3R_13058841_SNP [dm6]	G	A	1.860e^-5	0.715	INTRON sim	TF binding site mE1_TFBS_Kr
3L	18216746	3L_18216746_SNP [dm3] 3L_18223646_SNP [dm6]	G	T	1.874e^-5	0.715	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18216750	3L_18216750_SNP [dm3] 3L_18223650_SNP [dm6]	A	T	1.874e^-5	0.715	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18144011	3L_18144011_SNP [dm3] 3L_18150911_SNP [dm6]	A	C	2.025e^-5	0.715	INTRON CG7330
X	2474934	X_2474934_INS [dm3] X_2580901_INS [dm6]	G	GG	2.028e^-5	0.715	UPSTREAM CG13759 & 1 other INTERGENIC
2R	17099079	2R_17099079_SNP [dm3] 2R_21211574_SNP [dm6]	C	G	2.029e^-5	0.715	SYNONYMOUS_CODING CG44245 DOWNSTREAM Glycogenin
3L	13834302	3L_13834302_SNP [dm3] 3L_13841202_SNP [dm6]	G	T	2.080e^-5	0.715	UTR_3_PRIME CG8757	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9537917	3L_9537917_SNP [dm3] 3L_9544817_SNP [dm6]	A	G	2.082e^-5	0.715	UPSTREAM Ir67a INTERGENIC
3L	18216755	3L_18216755_SNP [dm3] 3L_18223655_SNP [dm6]	T	C	2.112e^-5	0.715	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15119504	3L_15119504_SNP [dm3] 3L_15126404_SNP [dm6]	C	A	2.128e^-5	0.715	INTRON Cep135	TF binding site BDTNP1_TFBS_Med
3L	5613631	3L_5613631_SNP [dm3] 3L_5620531_SNP [dm6]	C	T	2.153e^-5	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18114189	3L_18114189_SNP [dm3] 3L_18121089_SNP [dm6]	A	G	2.303e^-5	0.715	NON_SYNONYMOUS_CODING CG42853 DOWNSTREAM CG7341
3R	5694331	3R_5694331_SNP [dm3] 3R_9868609_SNP [dm6]	T	C	2.355e^-5	0.715	UPSTREAM Teh1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
3R	3834111	3R_3834111_SNP [dm3] 3R_8008389_SNP [dm6]	C	A	2.428e^-5	0.715	SYNONYMOUS_CODING CG11052 UPSTREAM CG2767
X	18206951	X_18206951_SNP [dm3] X_18312918_SNP [dm6]	G	T	2.588e^-5	0.715	UPSTREAM CR45609 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	15414935	3R_15414935_SNP [dm3] 3R_19589213_SNP [dm6]	T	C	2.614e^-5	0.715	INTRON Dys
3L	1021517	3L_1021517_SNP [dm3] 3L_1021517_SNP [dm6]	A	T	2.620e^-5	0.715	INTRON trio
3L	17673169	3L_17673169_SNP [dm3] 3L_17680069_SNP [dm6]	G	A	2.660e^-5	0.715	INTRON CG34251
2R	20031864	2R_20031864_SNP [dm3] 2R_24144341_SNP [dm6]	A	G	2.666e^-5	0.715	INTRON Dat
3R	21845201	3R_21845201_SNP [dm3] 3R_26019479_SNP [dm6]	A	T	2.714e^-5	0.715	UPSTREAM CR43643 DOWNSTREAM CR43644 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	9142695	2L_9142695_SNP [dm3] 2L_9142695_SNP [dm6]	T	A	2.760e^-5	0.715	INTRON CG32982
3R	2495969	3R_2495969_SNP [dm3] 3R_6670247_SNP [dm6]	T	G	2.765e^-5	0.715	INTRON lab	regulatory region FlyBase REDfly_CRMs
X	20359023	X_20359023_SNP [dm3] X_20487996_SNP [dm6]	G	C	2.789e^-5	0.715	INTRON RhoGAP19D
3L	1021978	3L_1021978_SNP [dm3] 3L_1021978_SNP [dm6]	G	A	2.807e^-5	0.715	INTRON trio
X	1540988	X_1540988_SNP [dm3] X_1646955_SNP [dm6]	C	T	2.826e^-5	0.715	INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	6501069	3L_6501069_SNP [dm3] 3L_6507969_SNP [dm6]	C	A	2.827e^-5	0.715	INTRON sfl
3L	7596801	3L_7596801_SNP [dm3] 3L_7603701_SNP [dm6]	G	T	2.849e^-5	0.715	NON_SYNONYMOUS_CODING CG33275
3L	8074949	3L_8074949_SNP [dm3] 3L_8081849_SNP [dm6]	A	G	2.969e^-5	0.715	DOWNSTREAM CR43974 INTRON Ect4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14439504	2R_14439504_SNP [dm3] 2R_18551999_SNP [dm6]	T	A	3.083e^-5	0.715	INTERGENIC
3L	13834156	3L_13834156_SNP [dm3] 3L_13841056_SNP [dm6]	G	T	3.108e^-5	0.715	UTR_3_PRIME CG8757	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8379922	3L_8379922_SNP [dm3] 3L_8386822_SNP [dm6]	T	C	3.119e^-5	0.715	SYNONYMOUS_CODING ImpE1
3L	936200	3L_936200_SNP [dm3] 3L_936200_SNP [dm6]	A	C	3.165e^-5	0.715	INTRON Glut1	TF binding site mE1_TFBS_chinmo
3R	7156227	3R_7156227_SNP [dm3] 3R_11330505_SNP [dm6]	T	A	3.221e^-5	0.715	INTRON pros	TF binding site BDTNP1_TFBS_dl
3R	9978074	3R_9978074_SNP [dm3] 3R_14152352_SNP [dm6]	C	T	3.314e^-5	0.715	SYNONYMOUS_CODING CG42500 UPSTREAM CG14355 DOWNSTREAM CG9722
X	18210774	X_18210774_SNP [dm3] X_18316741_SNP [dm6]	G	T	3.320e^-5	0.715	UPSTREAM CG6023 INTRON CG6023	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	21153922	3L_21153922_SNP [dm3] 3L_21160822_SNP [dm6]	C	T	3.450e^-5	0.715	UTR_5_PRIME Ac78C
2R	13815311	2R_13815311_SNP [dm3] 2R_17927806_SNP [dm6]	G	T	3.452e^-5	0.715	INTERGENIC
3L	10974073	3L_10974073_SNP [dm3] 3L_10980973_SNP [dm6]	A	T	3.489e^-5	0.715	DOWNSTREAM klu INTERGENIC
2R	16300297	2R_16300297_SNP [dm3] 2R_20412792_SNP [dm6]	C	A	3.538e^-5	0.715	INTERGENIC
3L	7596753	3L_7596753_INS [dm3] 3L_7603653_INS [dm6]	T	TT	3.584e^-5	0.715	INTRON CG33275
3L	18216713	3L_18216713_SNP [dm3] 3L_18223613_SNP [dm6]	A	G	3.691e^-5	0.715	INTERGENIC	TF binding site mE1_TFBS_inv
2R	13671122	2R_13671122_SNP [dm3] 2R_17783617_SNP [dm6]	T	A	3.705e^-5	0.715	DOWNSTREAM mir-31a INTERGENIC
3L	13834459	3L_13834459_SNP [dm3] 3L_13841359_SNP [dm6]	A	T	3.735e^-5	0.715	INTRON CG8757	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15377617	2R_15377617_SNP [dm3] 2R_19490112_SNP [dm6]	A	G	3.976e^-5	0.715	SYNONYMOUS_CODING Oseg6
3L	5314562	3L_5314562_SNP [dm3] 3L_5321462_SNP [dm6]	G	A	4.034e^-5	0.715	INTERGENIC
3R	15329534	3R_15329534_SNP [dm3] 3R_19503812_SNP [dm6]	G	A	4.040e^-5	0.715	UTR_5_PRIME Dys INTRON Dys	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	7225292	3L_7225292_SNP [dm3] 3L_7232192_SNP [dm6]	A	G	4.054e^-5	0.715	INTERGENIC
3R	26241986	3R_26241986_DEL [dm3] 3R_30416264_DEL [dm6]	TT	T	4.056e^-5	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	21061664	3R_21061664_SNP [dm3] 3R_25235942_SNP [dm6]	G	A	4.077e^-5	0.715	UPSTREAM CG10420 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5714750	3R_5714750_SNP [dm3] 3R_9889028_SNP [dm6]	A	G	4.100e^-5	0.715	INTRON Glut4EF
3R	16352725	3R_16352725_SNP [dm3] 3R_20527003_SNP [dm6]	A	T	4.118e^-5	0.715	INTERGENIC
3L	5314605	3L_5314605_SNP [dm3] 3L_5321505_SNP [dm6]	T	A	4.145e^-5	0.715	INTERGENIC
2L	6315462	2L_6315462_SNP [dm3] 2L_6315462_SNP [dm6]	T	G	4.243e^-5	0.715	INTRON Ddr
X	5856905	X_5856905_SNP [dm3] X_5962872_SNP [dm6]	C	T	4.256e^-5	0.715	NON_SYNONYMOUS_CODING fs_1_M3	TF binding site mE1_TFBS_chinmo
2R	16774185	2R_16774185_SNP [dm3] 2R_20886680_SNP [dm6]	T	G	4.347e^-5	0.715	SYNONYMOUS_CODING otp
3L	14366400	3L_14366400_SNP [dm3] 3L_14373300_SNP [dm6]	C	A	4.398e^-5	0.715	INTERGENIC
3R	7157630	3R_7157630_SNP [dm3] 3R_11331908_SNP [dm6]	T	C	4.404e^-5	0.715	UPSTREAM pros INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	23151847	3R_23151847_SNP [dm3] 3R_27326125_SNP [dm6]	C	T	4.417e^-5	0.715	INTERGENIC
2L	1303675	2L_1303675_SNP [dm3] 2L_1303675_SNP [dm6]	G	T	4.420e^-5	0.715	INTERGENIC
X	18206562	X_18206562_DEL [dm3] X_18312529_DEL [dm6]	CCATTCT	C	4.428e^-5	0.715	UPSTREAM CR45609 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	1302531	2L_1302531_SNP [dm3] 2L_1302531_SNP [dm6]	G	A	4.430e^-5	0.715	INTERGENIC
3L	18216753	3L_18216753_SNP [dm3] 3L_18223653_SNP [dm6]	C	A	4.459e^-5	0.715	INTERGENIC	TF binding site mE1_TFBS_inv
3R	23149909	3R_23149909_SNP [dm3] 3R_27324187_SNP [dm6]	G	A	4.484e^-5	0.715	INTERGENIC
3R	17080743	3R_17080743_SNP [dm3] 3R_21255021_SNP [dm6]	C	A	4.524e^-5	0.715	INTRON ETHR
3R	24657763	3R_24657763_SNP [dm3] 3R_28832041_SNP [dm6]	A	G	4.557e^-5	0.715	UPSTREAM WASp DOWNSTREAM Apc INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	13268744	3L_13268744_SNP [dm3] 3L_13275644_SNP [dm6]	C	G	4.657e^-5	0.715	UTR_5_PRIME caps	TF binding site mE1_TFBS_chinmo
2L	21962291	2L_21962291_SNP [dm3] 2L_21962291_SNP [dm6]	T	A	4.716e^-5	0.715	INTERGENIC
3L	21153942	3L_21153942_SNP [dm3] 3L_21160842_SNP [dm6]	A	T	4.752e^-5	0.715	UTR_5_PRIME Ac78C
3L	18170392	3L_18170392_SNP [dm3] 3L_18177292_SNP [dm6]	G	A	4.825e^-5	0.715	INTRON W	TF binding site BDTNP1_TFBS_twi
3L	18112600	3L_18112600_SNP [dm3] 3L_18119500_SNP [dm6]	C	T	4.829e^-5	0.715	DOWNSTREAM CG32195 INTRON CG7341	TF binding site mE1_TFBS_cad
X	18211679	X_18211679_SNP [dm3] X_18317646_SNP [dm6]	A	T	4.914e^-5	0.715	INTRON CG6023
3L	18216702	3L_18216702_DEL [dm3] 3L_18223602_DEL [dm6]	AT	A	5.041e^-5	0.715	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18216709	3L_18216709_SNP [dm3] 3L_18223609_SNP [dm6]	G	A	5.041e^-5	0.715	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18216710	3L_18216710_INS [dm3] 3L_18223610_INS [dm6]	G	GCTTAAAC	5.041e^-5	0.715	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18216735	3L_18216735_SNP [dm3] 3L_18223635_SNP [dm6]	C	G	5.041e^-5	0.715	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10745066	3L_10745066_SNP [dm3] 3L_10751966_SNP [dm6]	C	A	5.097e^-5	0.715	INTERGENIC
3L	15670635	3L_15670635_SNP [dm3] 3L_15677535_SNP [dm6]	T	C	5.133e^-5	0.715	INTERGENIC
3R	12575496	3R_12575496_SNP [dm3] 3R_16749774_SNP [dm6]	A	G	5.205e^-5	0.715	DOWNSTREAM CG31275 INTRON bxd	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	17060503	2L_17060503_SNP [dm3] 2L_17060503_SNP [dm6]	A	T	5.208e^-5	0.715	INTERGENIC
3R	7157502	3R_7157502_SNP [dm3] 3R_11331780_SNP [dm6]	T	G	5.235e^-5	0.715	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5314541	3L_5314541_DEL [dm3] 3L_5321441_DEL [dm6]	AC	A	5.248e^-5	0.715	INTERGENIC
3L	9334938	3L_9334938_SNP [dm3] 3L_9341838_SNP [dm6]	T	A	5.280e^-5	0.715	INTRON PGRP-LC	TF binding site mE1_TFBS_HSA
2L	2982876	2L_2982876_SNP [dm3] 2L_2982876_SNP [dm6]	G	A	5.295e^-5	0.715	SYNONYMOUS_CODING Chd1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18212342	X_18212342_SNP [dm3] X_18318309_SNP [dm6]	A	G	5.296e^-5	0.715	INTRON CG6023
2L	7434143	2L_7434143_SNP [dm3] 2L_7434143_SNP [dm6]	A	C	5.297e^-5	0.715	UPSTREAM CG5958 INTERGENIC
X	10459130	X_10459130_SNP [dm3] X_10565097_SNP [dm6]	G	A	5.346e^-5	0.715	DOWNSTREAM CG15296 INTRON spri
X	18210865	X_18210865_SNP [dm3] X_18316832_SNP [dm6]	G	A	5.371e^-5	0.715	UPSTREAM CG6023 INTRON CG6023	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16743645	2R_16743645_SNP [dm3] 2R_20856140_SNP [dm6]	C	T	5.420e^-5	0.715	INTERGENIC
2R	18973287	2R_18973287_SNP [dm3] 2R_23085764_SNP [dm6]	T	G	5.464e^-5	0.715	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1021658	3L_1021658_SNP [dm3] 3L_1021658_SNP [dm6]	A	T	5.521e^-5	0.715	INTRON trio
3L	18322414	3L_18322414_SNP [dm3] 3L_18329314_SNP [dm6]	T	A	5.530e^-5	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26211177	3R_26211177_SNP [dm3] 3R_30385455_SNP [dm6]	T	A	5.538e^-5	0.715	DOWNSTREAM Fer1HCH INTERGENIC
3L	10304444	3L_10304444_SNP [dm3] 3L_10311344_SNP [dm6]	A	T	5.678e^-5	0.715	INTERGENIC
3L	21635065	3L_21635065_SNP [dm3] 3L_21641965_SNP [dm6]	T	A	5.709e^-5	0.715	INTRON Atox1
2R	15377558	2R_15377558_SNP [dm3] 2R_19490053_SNP [dm6]	T	A	5.717e^-5	0.715	INTRON Oseg6
X	10752254	X_10752254_SNP [dm3] X_10858221_SNP [dm6]	T	G	5.725e^-5	0.715	UPSTREAM sofe INTRON CG2186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3508872	2L_3508872_SNP [dm3] 2L_3508872_SNP [dm6]	A	T	5.732e^-5	0.715	UPSTREAM CR45300 & 1 other DOWNSTREAM CG31954 EXON CR45299
2R	15018247	2R_15018247_SNP [dm3] 2R_19130742_SNP [dm6]	T	C	5.809e^-5	0.715	SYNONYMOUS_CODING botv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	16538659	3R_16538659_SNP [dm3] 3R_20712937_SNP [dm6]	A	G	5.853e^-5	0.715	INTRON Oamb
2L	6315763	2L_6315763_SNP [dm3] 2L_6315763_SNP [dm6]	G	A	5.855e^-5	0.715	INTRON Ddr
2R	6929352	2R_6929352_SNP [dm3] 2R_11041847_SNP [dm6]	A	T	5.877e^-5	0.715	INTRON luna	TF binding site mE1_TFBS_cad
3R	8543987	3R_8543987_SNP [dm3] 3R_12718265_SNP [dm6]	G	A	5.878e^-5	0.715	INTRON Men
2R	14439417	2R_14439417_SNP [dm3] 2R_18551912_SNP [dm6]	T	C	5.949e^-5	0.715	INTERGENIC
X	3821615	X_3821615_DEL [dm3] X_3927582_DEL [dm6]	TGTAT	T	5.965e^-5	0.715	INTRON CG42541
3R	21845318	3R_21845318_SNP [dm3] 3R_26019596_SNP [dm6]	A	G	6.002e^-5	0.715	UPSTREAM CR43643 DOWNSTREAM CR43644 INTERGENIC
2R	5635181	2R_5635181_SNP [dm3] 2R_9747676_SNP [dm6]	G	T	6.005e^-5	0.715	UTR_5_PRIME sqa
3R	27010374	3R_27010374_SNP [dm3] 3R_31184652_SNP [dm6]	T	C	6.044e^-5	0.715	SYNONYMOUS_CODING mesh
3L	13301422	3L_13301422_SNP [dm3] 3L_13308322_SNP [dm6]	T	A	6.106e^-5	0.715	INTERGENIC
X	18211008	X_18211008_SNP [dm3] X_18316975_SNP [dm6]	G	C	6.144e^-5	0.715	INTRON CG6023	TF binding site mE1_TFBS_HSA
X	20341570	X_20341570_SNP [dm3] X_20470543_SNP [dm6]	C	A	6.154e^-5	0.715	UTR_3_PRIME RhoGAP19D DOWNSTREAM GstT3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	470212	2R_470212_SNP [dm3] 2R_4582707_SNP [dm6]	G	C	6.195e^-5	0.715	INTERGENIC	transposable element FlyBase
3R	12096140	3R_12096140_SNP [dm3] 3R_16270418_SNP [dm6]	T	C	6.208e^-5	0.715	SYNONYMOUS_CODING Mat89Ba
3R	11273178	3R_11273178_SNP [dm3] 3R_15447456_SNP [dm6]	G	A	6.314e^-5	0.715	SYNONYMOUS_CODING AdamTS-A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15685217	3R_15685217_SNP [dm3] 3R_19859495_SNP [dm6]	A	T	6.317e^-5	0.715	INTRON Ire1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	15670940	3L_15670940_SNP [dm3] 3L_15677840_SNP [dm6]	G	A	6.322e^-5	0.715	INTERGENIC
2R	18272139	2R_18272139_DEL [dm3] 2R_22384634_DEL [dm6]	GCAT	G	6.358e^-5	0.715	INTRON CG13506	TF binding site mE1_TFBS_Trl
2L	7902481	2L_7902481_SNP [dm3] 2L_7902481_SNP [dm6]	G	C	6.399e^-5	0.715	INTRON Snoo
2L	21335199	2L_21335199_SNP [dm3] 2L_21335199_SNP [dm6]	T	C	6.458e^-5	0.715	INTRON dimm
X	18207933	X_18207933_INS [dm3] X_18313900_INS [dm6]	A	AAAAATAAATTCATTTTCTG...	6.463e^-5	0.715	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3L	1184305	3L_1184305_SNP [dm3] 3L_1184305_SNP [dm6]	C	G	6.499e^-5	0.715	INTERGENIC
3L	3220853	3L_3220853_INS [dm3] 3L_3220853_INS [dm6]	C	CTC	6.503e^-5	0.715	UTR_3_PRIME CG12034 DOWNSTREAM RpL28 & 2 others	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
2R	6435388	2R_6435388_SNP [dm3] 2R_10547883_SNP [dm6]	T	A	6.529e^-5	0.715	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	5314572	3L_5314572_SNP [dm3] 3L_5321472_SNP [dm6]	G	A	6.531e^-5	0.715	INTERGENIC
3L	15670950	3L_15670950_SNP [dm3] 3L_15677850_SNP [dm6]	C	T	6.576e^-5	0.715	INTERGENIC
3L	10304448	3L_10304448_SNP [dm3] 3L_10311348_SNP [dm6]	G	T	6.609e^-5	0.715	INTERGENIC
3L	13834323	3L_13834323_DEL [dm3] 3L_13841223_DEL [dm6]	AAGTATCCATTCAAATTGTC...	A	6.725e^-5	0.715	UTR_3_PRIME CG8757	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3611401	3L_3611401_SNP [dm3] 3L_3611401_SNP [dm6]	A	G	6.787e^-5	0.715	UPSTREAM CG10359 DOWNSTREAM Eip63E INTERGENIC
3R	16348983	3R_16348983_INS [dm3] 3R_20523261_INS [dm6]	C	CTAAAAAATAGG...	6.799e^-5	0.715	INTERGENIC
3R	16348985	3R_16348985_INS [dm3] 3R_20523263_INS [dm6]	C	CAA	6.834e^-5	0.715	INTERGENIC
3R	6667237	3R_6667237_INS [dm3] 3R_10841515_INS [dm6]	A	AA	6.889e^-5	0.715	INTRON Cad86C
2R	14439510	2R_14439510_SNP [dm3] 2R_18552005_SNP [dm6]	T	C	6.909e^-5	0.715	INTERGENIC
2R	14398622	2R_14398622_SNP [dm3] 2R_18511117_SNP [dm6]	T	A	6.971e^-5	0.715	INTERGENIC
2L	6203521	2L_6203521_SNP [dm3] 2L_6203521_SNP [dm6]	T	G	7.002e^-5	0.715	SYNONYMOUS_CODING CG34380	TF binding site mE1_TFBS_sens
3L	10304447	3L_10304447_SNP [dm3] 3L_10311347_SNP [dm6]	T	C	7.113e^-5	0.715	INTERGENIC
2L	2171835	2L_2171835_SNP [dm3] 2L_2171835_SNP [dm6]	C	T	7.292e^-5	0.715	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25309025	3R_25309025_SNP [dm3] 3R_29483303_SNP [dm6]	A	G	7.301e^-5	0.715	SYNONYMOUS_CODING Ptp99A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5680663	2L_5680663_DEL [dm3] 2L_5680663_DEL [dm6]	TATTAAT	T	7.348e^-5	0.715	INTERGENIC
X	4911937	X_4911937_SNP [dm3] X_5017904_SNP [dm6]	C	T	7.516e^-5	0.715	INTRON CR44833	TF binding site mE1_TFBS_inv
2R	3506106	2R_3506106_SNP [dm3] 2R_7618601_SNP [dm6]	C	A	7.527e^-5	0.715	INTRON CG1358	TF binding site mE1_TFBS_chinmo
3R	23800205	3R_23800205_SNP [dm3] 3R_27974483_SNP [dm6]	A	G	7.547e^-5	0.715	INTRON betaTub97EF
3R	23151696	3R_23151696_SNP [dm3] 3R_27325974_SNP [dm6]	A	C	7.642e^-5	0.715	INTERGENIC
3R	16348882	3R_16348882_SNP [dm3] 3R_20523160_SNP [dm6]	G	A	7.661e^-5	0.715	INTERGENIC
X	18204349	X_18204349_SNP [dm3] X_18310316_SNP [dm6]	A	T	7.698e^-5	0.715	DOWNSTREAM CR45608 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	7434151	2L_7434151_SNP [dm3] 2L_7434151_SNP [dm6]	T	A	7.715e^-5	0.715	UPSTREAM CG5958 INTERGENIC
2L	683988	2L_683988_SNP [dm3] 2L_683988_SNP [dm6]	G	T	7.795e^-5	0.715	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	683989	2L_683989_SNP [dm3] 2L_683989_SNP [dm6]	T	A	7.795e^-5	0.715	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5314650	3L_5314650_DEL [dm3] 3L_5321550_DEL [dm6]	AA	A	7.914e^-5	0.715	INTERGENIC
3R	16348988	3R_16348988_DEL [dm3] 3R_20523266_DEL [dm6]	TTAA	T	7.915e^-5	0.715	INTERGENIC
2L	4399169	2L_4399169_SNP [dm3] 2L_4399169_SNP [dm6]	C	T	7.930e^-5	0.715	SYNONYMOUS_CODING l_2_k05819
3R	2611516	3R_2611516_SNP [dm3] 3R_6785794_SNP [dm6]	C	T	7.968e^-5	0.715	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_inv
3R	12575471	3R_12575471_SNP [dm3] 3R_16749749_SNP [dm6]	G	C	7.979e^-5	0.715	DOWNSTREAM CG31275 INTRON bxd	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	11143135	2L_11143135_SNP [dm3] 2L_11143135_SNP [dm6]	C	T	7.989e^-5	0.715	INTRON Gyc32E
3R	10012571	3R_10012571_SNP [dm3] 3R_14186849_SNP [dm6]	G	C	8.055e^-5	0.715	INTRON Dop1R1
2L	7434141	2L_7434141_SNP [dm3] 2L_7434141_SNP [dm6]	A	G	8.081e^-5	0.715	UPSTREAM CG5958 INTERGENIC
3L	18216690	3L_18216690_INS [dm3] 3L_18223590_INS [dm6]	A	ATA	8.100e^-5	0.715	INTERGENIC	TF binding site mE1_TFBS_inv
2R	14406515	2R_14406515_SNP [dm3] 2R_18519010_SNP [dm6]	T	C	8.262e^-5	0.715	INTRON CG43066	TF binding site mE1_TFBS_inv
3R	6667256	3R_6667256_SNP [dm3] 3R_10841534_SNP [dm6]	A	C	8.332e^-5	0.715	INTRON Cad86C
2R	15259829	2R_15259829_SNP [dm3] 2R_19372324_SNP [dm6]	A	T	8.349e^-5	0.715	INTRON CG9416	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
X	4239821	X_4239821_SNP [dm3] X_4345788_SNP [dm6]	C	A	8.357e^-5	0.715	INTRON norpA
2R	13669766	2R_13669766_SNP [dm3] 2R_17782261_SNP [dm6]	C	A	8.445e^-5	0.715	UPSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16741749	2R_16741749_SNP [dm3] 2R_20854244_SNP [dm6]	A	G	8.525e^-5	0.715	INTERGENIC
2R	6828815	2R_6828815_SNP [dm3] 2R_10941310_SNP [dm6]	T	A	8.538e^-5	0.715	SYNONYMOUS_CODING Spn47C
3R	2301878	3R_2301878_SNP [dm3] 3R_6476156_SNP [dm6]	A	T	8.616e^-5	0.715	INTERGENIC
3L	5613313	3L_5613313_SNP [dm3] 3L_5620213_SNP [dm6]	A	C	8.644e^-5	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	18207926	X_18207926_SNP [dm3] X_18313893_SNP [dm6]	C	G	8.670e^-5	0.715	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
X	18207967	X_18207967_SNP [dm3] X_18313934_SNP [dm6]	T	G	8.670e^-5	0.715	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	18207986	X_18207986_SNP [dm3] X_18313953_SNP [dm6]	T	C	8.670e^-5	0.715	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	18212648	X_18212648_SNP [dm3] X_18318615_SNP [dm6]	T	C	8.762e^-5	0.715	INTRON CG6023
3L	8992531	3L_8992531_SNP [dm3] 3L_8999431_SNP [dm6]	A	G	8.789e^-5	0.715	SYNONYMOUS_CODING CG5087	TF binding site mE1_TFBS_sens
3L	23904480	3L_23904480_SNP [dm3] 3L_23911380_SNP [dm6]	C	A	8.845e^-5	0.715	INTRON CG40470
X	10752345	X_10752345_SNP [dm3] X_10858312_SNP [dm6]	G	A	8.847e^-5	0.715	SYNONYMOUS_CODING CG2186 UPSTREAM sofe	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15377586	2R_15377586_SNP [dm3] 2R_19490081_SNP [dm6]	A	T	8.884e^-5	0.715	INTRON Oseg6
3L	17673115	3L_17673115_SNP [dm3] 3L_17680015_SNP [dm6]	A	G	8.901e^-5	0.715	INTRON CG34251
2R	18571426	2R_18571426_SNP [dm3] 2R_22683921_SNP [dm6]	G	A	8.915e^-5	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	7157784	3R_7157784_DEL [dm3] 3R_11332062_DEL [dm6]	GGT	G	8.954e^-5	0.715	UPSTREAM pros INTRON pros	TF binding site mE1_TFBS_chinmo
3L	1021678	3L_1021678_SNP [dm3] 3L_1021678_SNP [dm6]	T	C	8.962e^-5	0.715	INTRON trio
3L	13834319	3L_13834319_SNP [dm3] 3L_13841219_SNP [dm6]	A	C	8.969e^-5	0.715	UTR_3_PRIME CG8757	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20341562	X_20341562_DEL [dm3] X_20470535_DEL [dm6]	TG	T	8.981e^-5	0.715	UTR_3_PRIME RhoGAP19D DOWNSTREAM GstT3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18211947	X_18211947_SNP [dm3] X_18317914_SNP [dm6]	A	T	9.021e^-5	0.715	INTRON CG6023
3R	11979667	3R_11979667_SNP [dm3] 3R_16153945_SNP [dm6]	A	G	9.073e^-5	0.715	INTERGENIC
3L	19522680	3L_19522680_SNP [dm3] 3L_19529580_SNP [dm6]	A	T	9.147e^-5	0.715	INTERGENIC
X	18207916	X_18207916_SNP [dm3] X_18313883_SNP [dm6]	A	G	9.184e^-5	0.715	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3R	23151674	3R_23151674_SNP [dm3] 3R_27325952_SNP [dm6]	A	G	9.251e^-5	0.715	INTERGENIC
3R	27511421	3R_27511421_SNP [dm3] 3R_31685699_SNP [dm6]	A	T	9.253e^-5	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	5905894	X_5905894_SNP [dm3] X_6011861_SNP [dm6]	C	T	9.289e^-5	0.715	INTRON mab-21
3L	9544033	3L_9544033_SNP [dm3] 3L_9550933_SNP [dm6]	T	A	9.310e^-5	0.715	INTRON CG42673
X	19632459	X_19632459_SNP [dm3] X_19738426_SNP [dm6]	T	A	9.354e^-5	0.715	UTR_3_PRIME CG14234	TF binding site mE1_TFBS_chinmo
2R	17128919	2R_17128919_SNP [dm3] 2R_21241414_SNP [dm6]	A	G	9.417e^-5	0.715	INTRON ASPP
3R	26377862	3R_26377862_SNP [dm3] 3R_30552140_SNP [dm6]	A	G	9.551e^-5	0.715	INTRON tmod
3R	9416076	3R_9416076_DEL [dm3] 3R_13590354_DEL [dm6]	TAT	T	9.575e^-5	0.715	INTERGENIC
3R	8543895	3R_8543895_SNP [dm3] 3R_12718173_SNP [dm6]	A	G	9.576e^-5	0.715	INTRON Men
2R	9901419	2R_9901419_SNP [dm3] 2R_14013914_SNP [dm6]	C	A	9.578e^-5	0.715	INTRON mam	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18212689	X_18212689_SNP [dm3] X_18318656_SNP [dm6]	C	G	9.601e^-5	0.715	INTRON CG6023
3R	9980926	3R_9980926_SNP [dm3] 3R_14155204_SNP [dm6]	T	C	9.621e^-5	0.715	SYNONYMOUS_CODING CG31533 UPSTREAM CR44215
3L	23226400	3L_23226400_SNP [dm3] 3L_23233300_SNP [dm6]	G	A	9.649e^-5	0.715	INTRON nAChRalpha4
3R	2549474	3R_2549474_SNP [dm3] 3R_6723752_SNP [dm6]	G	C	9.658e^-5	0.715	INTRON pb	enhancer mE1_CBP_Enhancers regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	18216723	3L_18216723_SNP [dm3] 3L_18223623_SNP [dm6]	C	T	9.705e^-5	0.715	INTERGENIC	TF binding site mE1_TFBS_inv
3R	21061980	3R_21061980_SNP [dm3] 3R_25236258_SNP [dm6]	A	G	9.745e^-5	0.715	UPSTREAM CG10420 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15377550	2R_15377550_SNP [dm3] 2R_19490045_SNP [dm6]	G	A	9.757e^-5	0.715	SPLICE_SITE_REGION Oseg6 INTRON Oseg6
2L	3597872	2L_3597872_SNP [dm3] 2L_3597872_SNP [dm6]	C	G	9.757e^-5	0.715	INTERGENIC
2R	6844769	2R_6844769_SNP [dm3] 2R_10957264_SNP [dm6]	C	T	9.800e^-5	0.715	INTERGENIC
3L	14109883	3L_14109883_SNP [dm3] 3L_14116783_SNP [dm6]	C	T	9.827e^-5	0.715	INTRON Sox21b
3R	24111216	3R_24111216_SNP [dm3] 3R_28285494_SNP [dm6]	G	T	9.840e^-5	0.715	DOWNSTREAM CG34437 INTERGENIC
X	19282907	X_19282907_SNP [dm3] X_19388874_SNP [dm6]	G	C	9.862e^-5	0.715	INTRON kek5
X	18207990	X_18207990_SNP [dm3] X_18313957_SNP [dm6]	T	C	9.872e^-5	0.715	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16746808	2R_16746808_SNP [dm3] 2R_20859303_SNP [dm6]	G	A	9.876e^-5	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9741877	2R_9741877_SNP [dm3] 2R_13854372_SNP [dm6]	A	T	9.980e^-5	0.715	UPSTREAM CR44367 & 1 other DOWNSTREAM CG6553 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12938651	3L_12938651_SNP [dm3] 3L_12945551_SNP [dm6]	G	A	1.000e^-4	0.715	INTERGENIC
3L	12938652	3L_12938652_SNP [dm3] 3L_12945552_SNP [dm6]	T	A	1.000e^-4	0.715	INTERGENIC
2L	6316585	2L_6316585_SNP [dm3] 2L_6316585_SNP [dm6]	A	G	1.001e^-4	0.715	INTRON Ddr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3611446	3L_3611446_SNP [dm3] 3L_3611446_SNP [dm6]	C	T	1.005e^-4	0.715	UPSTREAM CG10359 DOWNSTREAM Eip63E INTERGENIC
2R	5635129	2R_5635129_SNP [dm3] 2R_9747624_SNP [dm6]	T	C	1.012e^-4	0.715	UTR_5_PRIME sqa
2L	683994	2L_683994_SNP [dm3] 2L_683994_SNP [dm6]	G	A	1.017e^-4	0.715	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6316253	2L_6316253_SNP [dm3] 2L_6316253_SNP [dm6]	T	C	1.017e^-4	0.715	INTRON Ddr
3L	7545747	3L_7545747_SNP [dm3] 3L_7552647_SNP [dm6]	T	G	1.019e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16427976	3R_16427976_SNP [dm3] 3R_20602254_SNP [dm6]	C	T	1.019e^-4	0.715	INTRON bon	transposable element FlyBase
3L	23884629	3L_23884629_SNP [dm3] 3L_23891529_SNP [dm6]	A	G	1.026e^-4	0.715	INTRON CG40470
X	3821654	X_3821654_SNP [dm3] X_3927621_SNP [dm6]	C	T	1.030e^-4	0.715	INTRON CG42541
3R	6667380	3R_6667380_SNP [dm3] 3R_10841658_SNP [dm6]	C	T	1.033e^-4	0.715	INTRON Cad86C
X	18211982	X_18211982_SNP [dm3] X_18317949_SNP [dm6]	C	T	1.037e^-4	0.715	INTRON CG6023
2R	18952334	2R_18952334_SNP [dm3] 2R_23064811_SNP [dm6]	A	G	1.039e^-4	0.715	UTR_5_PRIME PPO3 UPSTREAM CG9890	TF binding site mE1_TFBS_chinmo
2R	18952335	2R_18952335_SNP [dm3] 2R_23064812_SNP [dm6]	T	G	1.039e^-4	0.715	UTR_5_PRIME PPO3 UPSTREAM CG9890	TF binding site mE1_TFBS_chinmo
3R	22453593	3R_22453593_DEL [dm3] 3R_26627871_DEL [dm6]	AA	A	1.040e^-4	0.715	DOWNSTREAM TwdlK INTERGENIC
3L	12938721	3L_12938721_SNP [dm3] 3L_12945621_SNP [dm6]	T	G	1.042e^-4	0.715	INTERGENIC
2L	6278399	2L_6278399_SNP [dm3] 2L_6278399_SNP [dm6]	G	T	1.045e^-4	0.715	INTRON Ddr
3R	6667394	3R_6667394_SNP [dm3] 3R_10841672_SNP [dm6]	C	T	1.046e^-4	0.715	INTRON Cad86C
3R	22016818	3R_22016818_SNP [dm3] 3R_26191096_SNP [dm6]	C	G	1.050e^-4	0.715	SYNONYMOUS_CODING CG34129
3L	12938611	3L_12938611_SNP [dm3] 3L_12945511_SNP [dm6]	T	C	1.052e^-4	0.715	INTERGENIC
3L	12938718	3L_12938718_DEL [dm3] 3L_12945618_DEL [dm6]	TT	T	1.052e^-4	0.715	INTERGENIC
2R	2569173	2R_2569173_SNP [dm3] 2R_6681668_SNP [dm6]	T	C	1.064e^-4	0.715	UPSTREAM CR44164 DOWNSTREAM CR44165 INTRON CG9422	TF binding site mE1_TFBS_HSA
3R	27300122	3R_27300122_SNP [dm3] 3R_31474400_SNP [dm6]	A	T	1.067e^-4	0.715	DOWNSTREAM CR45555 INTERGENIC
3L	4808752	3L_4808752_SNP [dm3] 3L_4808752_SNP [dm6]	C	T	1.069e^-4	0.715	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	13834190	3L_13834190_SNP [dm3] 3L_13841090_SNP [dm6]	A	C	1.074e^-4	0.715	UTR_3_PRIME CG8757	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5733099	3R_5733099_SNP [dm3] 3R_9907377_SNP [dm6]	C	A	1.075e^-4	0.715	INTRON Glut4EF
2R	16617619	2R_16617619_SNP [dm3] 2R_20730114_SNP [dm6]	A	G	1.080e^-4	0.715	NON_SYNONYMOUS_CODING CG13442 INTRON dpr
3R	12577074	3R_12577074_SNP [dm3] 3R_16751352_SNP [dm6]	A	C	1.080e^-4	0.715	UPSTREAM CG31275 INTRON bxd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15144891	2R_15144891_INS [dm3] 2R_19257386_INS [dm6]	T	TT	1.094e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3L	6440881	3L_6440881_SNP [dm3] 3L_6447781_SNP [dm6]	A	C	1.097e^-4	0.715	INTRON CG42747
3L	7596130	3L_7596130_SNP [dm3] 3L_7603030_SNP [dm6]	A	G	1.099e^-4	0.715	SYNONYMOUS_CODING CG33275
3L	13834304	3L_13834304_DEL [dm3] 3L_13841204_DEL [dm6]	TGCAGTACAAA...	T	1.103e^-4	0.715	UTR_3_PRIME CG8757	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4211957	3R_4211957_SNP [dm3] 3R_8386235_SNP [dm6]	T	G	1.106e^-4	0.715	SYNONYMOUS_CODING CG45263 INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13838080	3L_13838080_SNP [dm3] 3L_13844980_SNP [dm6]	C	T	1.109e^-4	0.715	SYNONYMOUS_CODING Tsp68C	TF binding site mE1_TFBS_bab1
2R	16741746	2R_16741746_SNP [dm3] 2R_20854241_SNP [dm6]	C	A	1.109e^-4	0.715	INTERGENIC
X	18212238	X_18212238_SNP [dm3] X_18318205_SNP [dm6]	G	A	1.112e^-4	0.715	INTRON CG6023
3R	25385870	3R_25385870_INS [dm3] 3R_29560148_INS [dm6]	A	AACCA	1.113e^-4	0.715	INTRON Dr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9337874	3L_9337874_SNP [dm3] 3L_9344774_SNP [dm6]	A	G	1.125e^-4	0.715	INTRON PGRP-LC
3L	8226520	3L_8226520_SNP [dm3] 3L_8233420_SNP [dm6]	C	T	1.129e^-4	0.715	INTRON CG7213
3R	20936118	3R_20936118_SNP [dm3] 3R_25110396_SNP [dm6]	C	T	1.131e^-4	0.715	INTRON CG13650
2L	7434161	2L_7434161_SNP [dm3] 2L_7434161_SNP [dm6]	A	C	1.132e^-4	0.715	UPSTREAM CG5958 INTERGENIC
X	5856904	X_5856904_SNP [dm3] X_5962871_SNP [dm6]	T	A	1.138e^-4	0.715	NON_SYNONYMOUS_CODING fs_1_M3	TF binding site mE1_TFBS_chinmo
3L	11244287	3L_11244287_INS [dm3] 3L_11251187_INS [dm6]	G	TATTCATTTATCATTATTCA...	1.138e^-4	0.715	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	9901495	2R_9901495_SNP [dm3] 2R_14013990_SNP [dm6]	A	G	1.142e^-4	0.715	INTRON mam	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5314539	3L_5314539_SNP [dm3] 3L_5321439_SNP [dm6]	T	G	1.162e^-4	0.715	INTERGENIC
3R	24959269	3R_24959269_SNP [dm3] 3R_29133547_SNP [dm6]	C	T	1.165e^-4	0.715	INTRON Vha100-1
3L	18322416	3L_18322416_SNP [dm3] 3L_18329316_SNP [dm6]	A	T	1.167e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12281996	2R_12281996_SNP [dm3] 2R_16394491_SNP [dm6]	T	C	1.175e^-4	0.715	INTRON Sema-2b
2R	10226955	2R_10226955_DEL [dm3] 2R_14339450_DEL [dm6]	CC	C	1.177e^-4	0.715	INTRON Shroom
3L	16267184	3L_16267184_SNP [dm3] 3L_16274084_SNP [dm6]	G	A	1.182e^-4	0.715	DOWNSTREAM CG13066 INTERGENIC
2R	18272144	2R_18272144_SNP [dm3] 2R_22384639_SNP [dm6]	A	C	1.184e^-4	0.715	INTRON CG13506	TF binding site mE1_TFBS_Trl
3R	21061688	3R_21061688_SNP [dm3] 3R_25235966_SNP [dm6]	G	T	1.187e^-4	0.715	UPSTREAM CG10420 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6179646	3L_6179646_SNP [dm3] 3L_6186546_SNP [dm6]	C	T	1.195e^-4	0.715	SYNONYMOUS_CODING D19A DOWNSTREAM CG43293	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5635108	2R_5635108_SNP [dm3] 2R_9747603_SNP [dm6]	T	A	1.213e^-4	0.715	UTR_5_PRIME sqa
3R	5709332	3R_5709332_SNP [dm3] 3R_9883610_SNP [dm6]	T	C	1.214e^-4	0.715	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl
3R	27686599	3R_27686599_SNP [dm3] 3R_31860877_SNP [dm6]	C	G	1.217e^-4	0.715	INTRON heph
3R	23151697	3R_23151697_SNP [dm3] 3R_27325975_SNP [dm6]	C	T	1.222e^-4	0.715	INTERGENIC
2L	6289599	2L_6289599_SNP [dm3] 2L_6289599_SNP [dm6]	G	T	1.222e^-4	0.715	INTRON Ddr
X	18204153	X_18204153_DEL [dm3] X_18310120_DEL [dm6]	ATAC	A	1.227e^-4	0.715	UPSTREAM os DOWNSTREAM CR45608 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	12938658	3L_12938658_SNP [dm3] 3L_12945558_SNP [dm6]	C	T	1.229e^-4	0.715	INTERGENIC
3L	12938649	3L_12938649_SNP [dm3] 3L_12945549_SNP [dm6]	T	G	1.230e^-4	0.715	INTERGENIC
X	18210637	X_18210637_SNP [dm3] X_18316604_SNP [dm6]	G	A	1.233e^-4	0.715	UPSTREAM CG6023 INTRON CG6023	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	12804068	2R_12804068_SNP [dm3] 2R_16916563_SNP [dm6]	G	T	1.237e^-4	0.715	INTERGENIC
2R	9901458	2R_9901458_INS [dm3] 2R_14013953_INS [dm6]	A	AG	1.238e^-4	0.715	INTRON mam	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15764938	3R_15764938_SNP [dm3] 3R_19939216_SNP [dm6]	C	T	1.238e^-4	0.715	INTRON Hs6st
2L	15149855	2L_15149855_SNP [dm3] 2L_15149855_SNP [dm6]	T	A	1.239e^-4	0.715	INTERGENIC
X	18207776	X_18207776_SNP [dm3] X_18313743_SNP [dm6]	C	A	1.246e^-4	0.715	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	21623173	3L_21623173_SNP [dm3] 3L_21630073_SNP [dm6]	A	G	1.248e^-4	0.715	DOWNSTREAM MED1 INTRON MED1
3R	18243765	3R_18243765_SNP [dm3] 3R_22418043_SNP [dm6]	G	A	1.261e^-4	0.715	DOWNSTREAM lqfR INTRON lqfR
3R	21845194	3R_21845194_SNP [dm3] 3R_26019472_SNP [dm6]	A	C	1.264e^-4	0.715	UPSTREAM CR43643 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	8232907	3L_8232907_SNP [dm3] 3L_8239807_SNP [dm6]	A	G	1.265e^-4	0.715	NON_SYNONYMOUS_CODING CG7213 INTRON Dscam4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18322419	3L_18322419_INS [dm3] 3L_18329319_INS [dm6]	T	TT	1.265e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5869442	X_5869442_SNP [dm3] X_5975409_SNP [dm6]	A	G	1.266e^-4	0.715	INTRON Grip
3R	17641899	3R_17641899_DEL [dm3] 3R_21816177_DEL [dm6]	GC	G	1.266e^-4	0.715	INTRON CASK
3R	7156191	3R_7156191_SNP [dm3] 3R_11330469_SNP [dm6]	G	T	1.269e^-4	0.715	INTRON pros	TF binding site BDTNP1_TFBS_dl
3R	14594813	3R_14594813_SNP [dm3] 3R_18769091_SNP [dm6]	T	C	1.270e^-4	0.715	UTR_5_PRIME CG7720
2L	838390	2L_838390_SNP [dm3] 2L_838390_SNP [dm6]	C	T	1.279e^-4	0.715	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12096178	3R_12096178_SNP [dm3] 3R_16270456_SNP [dm6]	C	T	1.280e^-4	0.715	NON_SYNONYMOUS_CODING Mat89Ba
2R	9901391	2R_9901391_SNP [dm3] 2R_14013886_SNP [dm6]	G	A	1.285e^-4	0.715	INTRON mam	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13344808	3R_13344808_SNP [dm3] 3R_17519086_SNP [dm6]	T	C	1.288e^-4	0.715	UPSTREAM CR44349 INTERGENIC
X	19397085	X_19397085_SNP [dm3] X_19503052_SNP [dm6]	T	C	1.293e^-4	0.715	INTRON Pfrx & 1 other
3R	23177257	3R_23177257_SNP [dm3] 3R_27351535_SNP [dm6]	T	C	1.293e^-4	0.715	INTRON CG42534
3L	6500974	3L_6500974_SNP [dm3] 3L_6507874_SNP [dm6]	G	T	1.295e^-4	0.715	INTRON sfl
3R	18793665	3R_18793665_SNP [dm3] 3R_22967943_SNP [dm6]	A	C	1.302e^-4	0.715	DOWNSTREAM Tpl94D INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	15327463	X_15327463_SNP [dm3] X_15433430_SNP [dm6]	C	T	1.315e^-4	0.715	INTRON Cngl	transposable element FlyBase
3L	19654303	3L_19654303_SNP [dm3] 3L_19661203_SNP [dm6]	A	T	1.316e^-4	0.715	INTRON tey
X	1545853	X_1545853_SNP [dm3] X_1651820_SNP [dm6]	G	A	1.322e^-4	0.715	UPSTREAM CG11509 INTRON Mur2B & 1 other
X	18211388	X_18211388_SNP [dm3] X_18317355_SNP [dm6]	G	A	1.323e^-4	0.715	INTRON CG6023
2R	428712	2R_428712_SNP [dm3] 2R_4541207_SNP [dm6]	G	T	1.325e^-4	0.715	INTERGENIC	transposable element FlyBase
X	9595153	X_9595153_SNP [dm3] X_9701120_SNP [dm6]	G	C	1.326e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	539435	2L_539435_SNP [dm3] 2L_539435_SNP [dm6]	C	T	1.335e^-4	0.715	SYNONYMOUS_CODING ush	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	18952332	2R_18952332_SNP [dm3] 2R_23064809_SNP [dm6]	T	A	1.339e^-4	0.715	UTR_5_PRIME PPO3 UPSTREAM CG9890	TF binding site mE1_TFBS_chinmo
3R	25754683	3R_25754683_SNP [dm3] 3R_29928961_SNP [dm6]	C	T	1.340e^-4	0.715	NON_SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522
2L	7626997	2L_7626997_SNP [dm3] 2L_7626997_SNP [dm6]	A	T	1.343e^-4	0.715	INTERGENIC
3R	26195393	3R_26195393_SNP [dm3] 3R_30369671_SNP [dm6]	A	G	1.345e^-4	0.715	UTR_3_PRIME hdc
3R	21061701	3R_21061701_SNP [dm3] 3R_25235979_SNP [dm6]	A	G	1.351e^-4	0.715	UPSTREAM CG10420 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6056382	2L_6056382_SNP [dm3] 2L_6056382_SNP [dm6]	C	T	1.352e^-4	0.715	INTRON CG13995	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12938656	3L_12938656_SNP [dm3] 3L_12945556_SNP [dm6]	A	G	1.355e^-4	0.715	INTERGENIC
3R	8661305	3R_8661305_DEL [dm3] 3R_12835583_DEL [dm6]	TT	T	1.365e^-4	0.715	INTERGENIC
X	3821664	X_3821664_SNP [dm3] X_3927631_SNP [dm6]	G	C	1.372e^-4	0.715	INTRON CG42541
2L	6315453	2L_6315453_SNP [dm3] 2L_6315453_SNP [dm6]	T	C	1.383e^-4	0.715	INTRON Ddr
3R	12575601	3R_12575601_SNP [dm3] 3R_16749879_SNP [dm6]	T	A	1.385e^-4	0.715	DOWNSTREAM CG31275 INTRON bxd	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	14922206	3R_14922206_SNP [dm3] 3R_19096484_SNP [dm6]	A	G	1.390e^-4	0.715	UPSTREAM CG6040 DOWNSTREAM ATPsyn-d INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	9332008	3L_9332008_SNP [dm3] 3L_9338908_SNP [dm6]	G	T	1.394e^-4	0.715	DOWNSTREAM PGRP-LA INTRON PGRP-LC
3R	9416082	3R_9416082_SNP [dm3] 3R_13590360_SNP [dm6]	T	C	1.399e^-4	0.715	INTERGENIC
3R	17691971	3R_17691971_SNP [dm3] 3R_21866249_SNP [dm6]	T	A	1.407e^-4	0.715	SYNONYMOUS_CODING CG6569 DOWNSTREAM CG6569 & 1 other
2L	2389235	2L_2389235_SNP [dm3] 2L_2389235_SNP [dm6]	G	T	1.407e^-4	0.715	DOWNSTREAM CG43750 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8379925	3L_8379925_SNP [dm3] 3L_8386825_SNP [dm6]	T	C	1.413e^-4	0.715	SYNONYMOUS_CODING ImpE1
2L	1567562	2L_1567562_SNP [dm3] 2L_1567562_SNP [dm6]	T	G	1.416e^-4	0.715	INTRON haf
3R	14986342	3R_14986342_SNP [dm3] 3R_19160620_SNP [dm6]	A	G	1.418e^-4	0.715	SYNONYMOUS_CODING CG42358 UPSTREAM CG11779 DOWNSTREAM nos & 1 other
3L	18322328	3L_18322328_SNP [dm3] 3L_18329228_SNP [dm6]	G	A	1.421e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18322397	3L_18322397_SNP [dm3] 3L_18329297_SNP [dm6]	C	A	1.425e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12806979	2R_12806979_SNP [dm3] 2R_16919474_SNP [dm6]	G	A	1.432e^-4	0.715	INTERGENIC
3L	5982658	3L_5982658_SNP [dm3] 3L_5989558_SNP [dm6]	T	A	1.443e^-4	0.715	INTERGENIC
2R	15399673	2R_15399673_SNP [dm3] 2R_19512168_SNP [dm6]	G	A	1.443e^-4	0.715	SYNONYMOUS_CODING Ir56d DOWNSTREAM Ir56c	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	13834398	3L_13834398_SNP [dm3] 3L_13841298_SNP [dm6]	G	A	1.443e^-4	0.715	SYNONYMOUS_CODING CG8757	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16272828	3L_16272828_SNP [dm3] 3L_16279728_SNP [dm6]	A	T	1.444e^-4	0.715	UPSTREAM CG13050 & 1 other INTERGENIC
X	18207432	X_18207432_SNP [dm3] X_18313399_SNP [dm6]	C	A	1.446e^-4	0.715	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18207439	X_18207439_SNP [dm3] X_18313406_SNP [dm6]	A	G	1.446e^-4	0.715	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18207484	X_18207484_SNP [dm3] X_18313451_SNP [dm6]	A	G	1.446e^-4	0.715	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	459878	X_459878_SNP [dm3] X_565845_SNP [dm6]	C	T	1.447e^-4	0.715	INTRON Appl
X	459899	X_459899_SNP [dm3] X_565866_SNP [dm6]	T	A	1.447e^-4	0.715	INTRON Appl
2R	9901429	2R_9901429_DEL [dm3] 2R_14013924_DEL [dm6]	TTTCAGA	AC	1.448e^-4	0.715	INTRON mam	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8221681	2L_8221681_SNP [dm3] 2L_8221681_SNP [dm6]	G	C	1.457e^-4	0.715	SYNONYMOUS_CODING Pvr UPSTREAM Snx6
3R	9193900	3R_9193900_DEL [dm3] 3R_13368178_DEL [dm6]	TTAATCCTTTAAATAGT...	T	1.459e^-4	0.715	INTRON Dic1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20358812	X_20358812_DEL [dm3] X_20487785_DEL [dm6]	ATTAATTAA	C	1.470e^-4	0.715	INTRON RhoGAP19D
3L	18157562	3L_18157562_INS [dm3] 3L_18164462_INS [dm6]	A	AA	1.470e^-4	0.715	INTERGENIC
X	18209212	X_18209212_SNP [dm3] X_18315179_SNP [dm6]	G	A	1.470e^-4	0.715	SYNONYMOUS_CODING CG6023 UTR_5_PRIME CG6023	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	18157683	3L_18157683_SNP [dm3] 3L_18164583_SNP [dm6]	T	C	1.472e^-4	0.715	INTERGENIC
3R	8823921	3R_8823921_SNP [dm3] 3R_12998199_SNP [dm6]	C	A	1.475e^-4	0.715	UTR_5_PRIME CG7518 UPSTREAM CG17327 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	9287967	3L_9287967_DEL [dm3] 3L_9294867_DEL [dm6]	AACAGTACGTA...	A	1.475e^-4	0.715	INTERGENIC
3L	936112	3L_936112_SNP [dm3] 3L_936112_SNP [dm6]	A	T	1.476e^-4	0.715	INTRON Glut1
X	18644659	X_18644659_SNP [dm3] X_18750626_SNP [dm6]	T	G	1.476e^-4	0.715	INTERGENIC
3R	16411927	3R_16411927_SNP [dm3] 3R_20586205_SNP [dm6]	C	G	1.482e^-4	0.715	UTR_3_PRIME Sep2 UPSTREAM CG16953
3R	7162939	3R_7162939_SNP [dm3] 3R_11337217_SNP [dm6]	G	T	1.487e^-4	0.715	INTRON pros
2L	2389194	2L_2389194_SNP [dm3] 2L_2389194_SNP [dm6]	G	A	1.493e^-4	0.715	DOWNSTREAM CG43750 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11244299	3L_11244299_SNP [dm3] 3L_11251199_SNP [dm6]	A	T	1.496e^-4	0.715	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	10304418	3L_10304418_SNP [dm3] 3L_10311318_SNP [dm6]	T	C	1.496e^-4	0.715	INTERGENIC
3R	18711937	3R_18711937_SNP [dm3] 3R_22886215_SNP [dm6]	G	A	1.500e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	6273654	3L_6273654_SNP [dm3] 3L_6280554_SNP [dm6]	A	G	1.506e^-4	0.715	INTERGENIC
3L	11244298	3L_11244298_SNP [dm3] 3L_11251198_SNP [dm6]	T	A	1.517e^-4	0.715	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	7902490	2L_7902490_SNP [dm3] 2L_7902490_SNP [dm6]	A	C	1.517e^-4	0.715	INTRON Snoo
3R	6667356	3R_6667356_SNP [dm3] 3R_10841634_SNP [dm6]	T	C	1.521e^-4	0.715	INTRON Cad86C
3R	6667357	3R_6667357_SNP [dm3] 3R_10841635_SNP [dm6]	A	T	1.521e^-4	0.715	INTRON Cad86C
3R	6667359	3R_6667359_MNP [dm3] 3R_10841637_MNP [dm6]	GCAGCAGC	CTTTGCTA	1.521e^-4	0.715	INTRON Cad86C
3L	4713901	3L_4713901_SNP [dm3] 3L_4713901_SNP [dm6]	A	C	1.523e^-4	0.715	INTRON RhoGEF64C
2R	9377183	2R_9377183_SNP [dm3] 2R_13489678_SNP [dm6]	T	A	1.527e^-4	0.715	INTRON bbc	TF binding site mE1_TFBS_HSA
3R	27511438	3R_27511438_SNP [dm3] 3R_31685716_SNP [dm6]	A	G	1.530e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12299813	3L_12299813_SNP [dm3] 3L_12306713_SNP [dm6]	C	A	1.533e^-4	0.715	INTERGENIC
3R	25754645	3R_25754645_SNP [dm3] 3R_29928923_SNP [dm6]	A	G	1.541e^-4	0.715	SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522
3R	14595686	3R_14595686_SNP [dm3] 3R_18769964_SNP [dm6]	C	G	1.542e^-4	0.715	INTRON CG7720
X	1541137	X_1541137_SNP [dm3] X_1647104_SNP [dm6]	A	T	1.545e^-4	0.715	INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_dl
3L	13834386	3L_13834386_SNP [dm3] 3L_13841286_SNP [dm6]	A	T	1.556e^-4	0.715	SYNONYMOUS_CODING CG8757	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7901831	2L_7901831_INS [dm3] 2L_7901831_INS [dm6]	T	TT	1.559e^-4	0.715	INTRON Snoo
3L	10421468	3L_10421468_SNP [dm3] 3L_10428368_SNP [dm6]	C	T	1.561e^-4	0.715	INTERGENIC
2L	6316209	2L_6316209_SNP [dm3] 2L_6316209_SNP [dm6]	G	A	1.568e^-4	0.715	INTRON Ddr
3R	25754562	3R_25754562_SNP [dm3] 3R_29928840_SNP [dm6]	A	G	1.568e^-4	0.715	NON_SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522	TF binding site mE1_TFBS_chinmo
3L	11244173	3L_11244173_DEL [dm3] 3L_11251073_DEL [dm6]	GTTTCACATTCAG...	G	1.572e^-4	0.715	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	18212096	X_18212096_DEL [dm3] X_18318063_DEL [dm6]	TT	T	1.579e^-4	0.715	INTRON CG6023
3R	14688892	3R_14688892_SNP [dm3] 3R_18863170_SNP [dm6]	A	G	1.579e^-4	0.715	INTERGENIC
3R	21480574	3R_21480574_SNP [dm3] 3R_25654852_SNP [dm6]	A	T	1.579e^-4	0.715	INTRON Tnks	TF binding site mE1_TFBS_chinmo
2R	3245046	2R_3245046_SNP [dm3] 2R_7357541_SNP [dm6]	C	G	1.580e^-4	0.715	INTRON Dscam1
2L	5564485	2L_5564485_INS [dm3] 2L_5564485_INS [dm6]	A	AA	1.583e^-4	0.715	DOWNSTREAM GluRIIB & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	15405152	3L_15405152_SNP [dm3] 3L_15412052_SNP [dm6]	T	C	1.586e^-4	0.715	INTERGENIC
X	18500730	X_18500730_SNP [dm3] X_18606697_SNP [dm6]	T	C	1.588e^-4	0.715	UTR_3_PRIME CG15040	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7382722	X_7382722_SNP [dm3] X_7488689_SNP [dm6]	C	A	1.590e^-4	0.715	DOWNSTREAM CG43278 & 1 other INTERGENIC
3L	18322431	3L_18322431_SNP [dm3] 3L_18329331_SNP [dm6]	G	T	1.591e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18204506	X_18204506_SNP [dm3] X_18310473_SNP [dm6]	C	T	1.598e^-4	0.715	DOWNSTREAM CR45608 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	15377560	2R_15377560_INS [dm3] 2R_19490055_INS [dm6]	A	AA	1.599e^-4	0.715	INTRON Oseg6
2R	9901492	2R_9901492_SNP [dm3] 2R_14013987_SNP [dm6]	C	T	1.599e^-4	0.715	INTRON mam	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16267112	3L_16267112_SNP [dm3] 3L_16274012_SNP [dm6]	T	C	1.604e^-4	0.715	DOWNSTREAM CG13066 INTERGENIC
3R	26072737	3R_26072737_SNP [dm3] 3R_30247015_SNP [dm6]	G	A	1.604e^-4	0.715	UPSTREAM CG9733 DOWNSTREAM tRNA:CR31383 INTERGENIC
3R	20844834	3R_20844834_SNP [dm3] 3R_25019112_SNP [dm6]	A	G	1.620e^-4	0.715	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16499050	2L_16499050_SNP [dm3] 2L_16499050_SNP [dm6]	T	G	1.622e^-4	0.715	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18322376	3L_18322376_SNP [dm3] 3L_18329276_SNP [dm6]	A	T	1.626e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7434153	2L_7434153_SNP [dm3] 2L_7434153_SNP [dm6]	T	G	1.631e^-4	0.715	UPSTREAM CG5958 INTERGENIC
X	19918371	X_19918371_SNP [dm3] X_20024338_SNP [dm6]	A	T	1.635e^-4	0.715	UPSTREAM tRNA:CR32826 INTRON Dop2R	TF binding site BDTNP1_TFBS_dl
2R	15367744	2R_15367744_SNP [dm3] 2R_19480239_SNP [dm6]	A	G	1.638e^-4	0.715	INTRON par-1
2L	2388996	2L_2388996_SNP [dm3] 2L_2388996_SNP [dm6]	C	G	1.648e^-4	0.715	DOWNSTREAM CG43750 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6922388	2R_6922388_SNP [dm3] 2R_11034883_SNP [dm6]	C	G	1.652e^-4	0.715	INTRON luna	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	20325747	3R_20325747_SNP [dm3] 3R_24500025_SNP [dm6]	G	A	1.654e^-4	0.715	INTERGENIC
3L	10846631	3L_10846631_SNP [dm3] 3L_10853531_SNP [dm6]	T	C	1.667e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	19262591	3R_19262591_SNP [dm3] 3R_23436869_SNP [dm6]	G	T	1.671e^-4	0.715	INTRON CG4374
2R	19080738	2R_19080738_SNP [dm3] 2R_23193215_SNP [dm6]	T	A	1.671e^-4	0.715	INTRON CG34371
3L	12693301	3L_12693301_SNP [dm3] 3L_12700201_SNP [dm6]	G	A	1.675e^-4	0.715	INTRON mirr	TF binding site BDTNP1_TFBS_twi
2R	15377587	2R_15377587_DEL [dm3] 2R_19490082_DEL [dm6]	AC	A	1.688e^-4	0.715	INTRON Oseg6
2R	15377418	2R_15377418_SNP [dm3] 2R_19489913_SNP [dm6]	G	A	1.696e^-4	0.715	SYNONYMOUS_CODING Oseg6
X	1545854	X_1545854_SNP [dm3] X_1651821_SNP [dm6]	T	G	1.698e^-4	0.715	UPSTREAM CG11509 INTRON Mur2B & 1 other
2L	21975797	2L_21975797_SNP [dm3] 2L_21975797_SNP [dm6]	G	C	1.698e^-4	0.715	INTERGENIC
3L	18322368	3L_18322368_INS [dm3] 3L_18329268_INS [dm6]	A	TAT	1.714e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4091316	3L_4091316_SNP [dm3] 3L_4091316_SNP [dm6]	A	G	1.716e^-4	0.715	UTR_3_PRIME CG14989 DOWNSTREAM CG14989
3L	10846629	3L_10846629_SNP [dm3] 3L_10853529_SNP [dm6]	T	C	1.717e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10341070	3L_10341070_SNP [dm3] 3L_10347970_SNP [dm6]	C	G	1.724e^-4	0.715	UPSTREAM CR44327 INTERGENIC
3R	15303146	3R_15303146_DEL [dm3] 3R_19477424_DEL [dm6]	TAA	G	1.724e^-4	0.715	INTRON Dys
3L	12504724	3L_12504724_SNP [dm3] 3L_12511624_SNP [dm6]	C	T	1.725e^-4	0.715	SYNONYMOUS_CODING sti
3R	11419313	3R_11419313_SNP [dm3] 3R_15593591_SNP [dm6]	T	A	1.726e^-4	0.715	INTERGENIC
3L	5982638	3L_5982638_SNP [dm3] 3L_5989538_SNP [dm6]	T	A	1.728e^-4	0.715	INTERGENIC
3L	5982695	3L_5982695_SNP [dm3] 3L_5989595_SNP [dm6]	G	A	1.728e^-4	0.715	INTERGENIC
3L	5982704	3L_5982704_SNP [dm3] 3L_5989604_SNP [dm6]	C	T	1.728e^-4	0.715	INTERGENIC
3L	9396652	3L_9396652_SNP [dm3] 3L_9403552_SNP [dm6]	A	T	1.730e^-4	0.715	INTERGENIC
3R	27061791	3R_27061791_SNP [dm3] 3R_31236069_SNP [dm6]	G	A	1.735e^-4	0.715	UTR_3_PRIME qless UPSTREAM CG15564
2L	7099774	2L_7099774_SNP [dm3] 2L_7099774_SNP [dm6]	T	C	1.741e^-4	0.715	UTR_3_PRIME Pvf3	TF binding site BDTNP1_TFBS_sna
X	18206031	X_18206031_SNP [dm3] X_18311998_SNP [dm6]	T	A	1.741e^-4	0.715	UPSTREAM CR45608 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	27511409	3R_27511409_SNP [dm3] 3R_31685687_SNP [dm6]	T	A	1.743e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	27511440	3R_27511440_SNP [dm3] 3R_31685718_SNP [dm6]	G	A	1.743e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	27511479	3R_27511479_SNP [dm3] 3R_31685757_SNP [dm6]	G	A	1.743e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4631411	3L_4631411_INS [dm3] 3L_4631411_INS [dm6]	A	AA	1.750e^-4	0.715	INTRON axo
2R	12366207	2R_12366207_SNP [dm3] 2R_16478702_SNP [dm6]	C	T	1.754e^-4	0.715	INTERGENIC
2L	3815261	2L_3815261_SNP [dm3] 2L_3815261_SNP [dm6]	T	A	1.763e^-4	0.715	UPSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	10283741	3R_10283741_SNP [dm3] 3R_14458019_SNP [dm6]	C	G	1.767e^-4	0.715	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1313018	2L_1313018_SNP [dm3] 2L_1313018_SNP [dm6]	C	T	1.769e^-4	0.715	INTERGENIC
3R	6667382	3R_6667382_SNP [dm3] 3R_10841660_SNP [dm6]	T	A	1.769e^-4	0.715	INTRON Cad86C
3R	6667389	3R_6667389_INS [dm3] 3R_10841667_INS [dm6]	G	GTTGT	1.769e^-4	0.715	INTRON Cad86C
3R	6667392	3R_6667392_SNP [dm3] 3R_10841670_SNP [dm6]	C	T	1.769e^-4	0.715	INTRON Cad86C
3R	6667398	3R_6667398_SNP [dm3] 3R_10841676_SNP [dm6]	A	T	1.769e^-4	0.715	INTRON Cad86C
3L	8519189	3L_8519189_SNP [dm3] 3L_8526089_SNP [dm6]	T	G	1.773e^-4	0.715	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	6841044	3R_6841044_SNP [dm3] 3R_11015322_SNP [dm6]	G	A	1.773e^-4	0.715	INTRON CG34114
2R	16746758	2R_16746758_SNP [dm3] 2R_20859253_SNP [dm6]	T	C	1.774e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9980869	3R_9980869_SNP [dm3] 3R_14155147_SNP [dm6]	T	C	1.776e^-4	0.715	SYNONYMOUS_CODING CG31533 UPSTREAM CR44215
X	3795377	X_3795377_DEL [dm3] X_3901344_DEL [dm6]	GAAATCA	T	1.779e^-4	0.715	INTRON CG42541
3L	21057156	3L_21057156_SNP [dm3] 3L_21064056_SNP [dm6]	G	C	1.779e^-4	0.715	UTR_5_PRIME siz INTRON siz
2R	14941196	2R_14941196_SNP [dm3] 2R_19053691_SNP [dm6]	A	T	1.784e^-4	0.715	INTERGENIC
3L	18322428	3L_18322428_INS [dm3] 3L_18329328_INS [dm6]	T	TGCAAACGATT...	1.784e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18789340	3R_18789340_SNP [dm3] 3R_22963618_SNP [dm6]	T	G	1.790e^-4	0.715	DOWNSTREAM CR43655 INTERGENIC
X	19083709	X_19083709_SNP [dm3] X_19189676_SNP [dm6]	C	T	1.794e^-4	0.715	SYNONYMOUS_CODING Mec2 UPSTREAM HP1D3csd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4430659	2R_4430659_SNP [dm3] 2R_8543154_SNP [dm6]	A	G	1.795e^-4	0.715	EXON CR44279
3R	14094044	3R_14094044_SNP [dm3] 3R_18268322_SNP [dm6]	C	T	1.795e^-4	0.715	INTRON CG18599	TF binding site mE1_TFBS_run
3R	6667377	3R_6667377_SNP [dm3] 3R_10841655_SNP [dm6]	C	A	1.796e^-4	0.715	INTRON Cad86C
2R	18571366	2R_18571366_SNP [dm3] 2R_22683861_SNP [dm6]	G	A	1.798e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc
3R	26073232	3R_26073232_SNP [dm3] 3R_30247510_SNP [dm6]	C	G	1.800e^-4	0.715	UPSTREAM CG9733 DOWNSTREAM tRNA:CR31383 INTERGENIC	TF binding site mE1_TFBS_Kr
3L	10934344	3L_10934344_SNP [dm3] 3L_10941244_SNP [dm6]	G	T	1.802e^-4	0.715	INTERGENIC
3R	23254891	3R_23254891_SNP [dm3] 3R_27429169_SNP [dm6]	T	A	1.803e^-4	0.715	INTRON side
3L	914102	3L_914102_SNP [dm3] 3L_914102_SNP [dm6]	G	A	1.808e^-4	0.715	UTR_5_PRIME Glut1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15726802	3R_15726802_SNP [dm3] 3R_19901080_SNP [dm6]	C	G	1.821e^-4	0.715	SYNONYMOUS_CODING CG4538	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14556161	2R_14556161_SNP [dm3] 2R_18668656_SNP [dm6]	C	T	1.827e^-4	0.715	INTRON edl
3L	11704803	3L_11704803_SNP [dm3] 3L_11711703_SNP [dm6]	C	T	1.828e^-4	0.715	UPSTREAM crim DOWNSTREAM CG14132 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	21162693	3L_21162693_SNP [dm3] 3L_21169593_SNP [dm6]	G	A	1.829e^-4	0.715	INTRON Ac78C
2R	3526930	2R_3526930_SNP [dm3] 2R_7639425_SNP [dm6]	C	T	1.832e^-4	0.715	INTRON CG43340
3L	8204884	3L_8204884_SNP [dm3] 3L_8211784_SNP [dm6]	C	G	1.833e^-4	0.715	UPSTREAM CG8006 INTERGENIC
2L	7623766	2L_7623766_DEL [dm3] 2L_7623766_DEL [dm6]	GG	G	1.836e^-4	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21137202	3L_21137202_SNP [dm3] 3L_21144102_SNP [dm6]	C	A	1.847e^-4	0.715	INTRON Ac78C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9901417	2R_9901417_SNP [dm3] 2R_14013912_SNP [dm6]	A	C	1.855e^-4	0.715	INTRON mam	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9902246	2R_9902246_SNP [dm3] 2R_14014741_SNP [dm6]	G	C	1.856e^-4	0.715	INTRON mam
3L	10974804	3L_10974804_DEL [dm3] 3L_10981704_DEL [dm6]	AG	A	1.856e^-4	0.715	UTR_3_PRIME klu DOWNSTREAM klu
3R	21094610	3R_21094610_SNP [dm3] 3R_25268888_SNP [dm6]	C	A	1.857e^-4	0.715	DOWNSTREAM CR43310 INTRON CR45214 EXON CR13656
2R	6435390	2R_6435390_SNP [dm3] 2R_10547885_SNP [dm6]	G	T	1.860e^-4	0.715	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	1392582	3L_1392582_SNP [dm3] 3L_1392582_SNP [dm6]	T	C	1.861e^-4	0.715	INTRON Ptp61F	TF binding site mE1_TFBS_cad
3R	22713571	3R_22713571_SNP [dm3] 3R_26887849_SNP [dm6]	C	T	1.865e^-4	0.715	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11979685	3R_11979685_SNP [dm3] 3R_16153963_SNP [dm6]	C	A	1.878e^-4	0.715	INTERGENIC
2L	3432682	2L_3432682_SNP [dm3] 2L_3432682_SNP [dm6]	G	A	1.880e^-4	0.715	INTERGENIC
3L	20588902	3L_20588902_SNP [dm3] 3L_20595802_SNP [dm6]	T	G	1.883e^-4	0.715	INTERGENIC
3R	8599856	3R_8599856_SNP [dm3] 3R_12774134_SNP [dm6]	C	A	1.883e^-4	0.715	INTRON beat-Vc
3L	5705234	3L_5705234_SNP [dm3] 3L_5712134_SNP [dm6]	C	T	1.885e^-4	0.715	INTRON sif	TF binding site mE1_TFBS_chinmo
3L	4551901	3L_4551901_SNP [dm3] 3L_4551901_SNP [dm6]	T	C	1.891e^-4	0.716	SYNONYMOUS_CODING CG11357	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	3020162	X_3020162_SNP [dm3] X_3126129_SNP [dm6]	A	G	1.913e^-4	0.723	INTRON kirre
2R	8380659	2R_8380659_SNP [dm3] 2R_12493154_SNP [dm6]	G	C	1.920e^-4	0.724	INTRON fdl
3L	11704660	3L_11704660_SNP [dm3] 3L_11711560_SNP [dm6]	T	C	1.926e^-4	0.724	UPSTREAM crim DOWNSTREAM Ccdc56 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10940050	3L_10940050_SNP [dm3] 3L_10946950_SNP [dm6]	T	A	1.936e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_inv
3R	14094096	3R_14094096_SNP [dm3] 3R_18268374_SNP [dm6]	C	G	1.937e^-4	0.724	INTRON CG18599
3R	15621499	3R_15621499_SNP [dm3] 3R_19795777_SNP [dm6]	C	A	1.937e^-4	0.724	INTRON bnl
X	9447287	X_9447287_SNP [dm3] X_9553254_SNP [dm6]	A	G	1.938e^-4	0.724	INTRON l_1_G0320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	13358850	2L_13358850_SNP [dm3] 2L_13358850_SNP [dm6]	G	T	1.945e^-4	0.725	INTERGENIC
2R	18798229	2R_18798229_DEL [dm3] 2R_22910706_DEL [dm6]	CAAGCCCCGAGTC...	C	1.963e^-4	0.727	INTRON nahoda
3L	18322409	3L_18322409_SNP [dm3] 3L_18329309_SNP [dm6]	T	G	1.973e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	539458	2L_539458_SNP [dm3] 2L_539458_SNP [dm6]	G	A	1.975e^-4	0.727	SPLICE_SITE_REGION ush INTRON ush	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	18216698	3L_18216698_SNP [dm3] 3L_18223598_SNP [dm6]	A	C	1.977e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1043823	2L_1043823_SNP [dm3] 2L_1043823_SNP [dm6]	G	T	1.979e^-4	0.727	UPSTREAM IA-2 INTRON IA-2
2R	3050988	2R_3050988_SNP [dm3] 2R_7163483_SNP [dm6]	T	G	1.982e^-4	0.727	INTRON pk
2L	5827650	2L_5827650_SNP [dm3] 2L_5827650_SNP [dm6]	A	T	1.982e^-4	0.727	INTRON TrissinR
3L	10303439	3L_10303439_SNP [dm3] 3L_10310339_SNP [dm6]	T	A	1.994e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10742500	3L_10742500_SNP [dm3] 3L_10749400_SNP [dm6]	C	A	2.000e^-4	0.727	INTERGENIC
X	9757159	X_9757159_SNP [dm3] X_9863126_SNP [dm6]	G	A	2.001e^-4	0.727	INTERGENIC
3R	19262866	3R_19262866_SNP [dm3] 3R_23437144_SNP [dm6]	G	A	2.003e^-4	0.727	INTRON CG4374
3R	3331735	3R_3331735_SNP [dm3] 3R_7506013_SNP [dm6]	C	T	2.005e^-4	0.727	UPSTREAM alpha-Est9 INTERGENIC
X	18643307	X_18643307_SNP [dm3] X_18749274_SNP [dm6]	C	G	2.005e^-4	0.727	UPSTREAM CG12609 INTERGENIC
X	18643309	X_18643309_SNP [dm3] X_18749276_SNP [dm6]	C	G	2.005e^-4	0.727	UPSTREAM CG12609 INTERGENIC
3R	13330992	3R_13330992_SNP [dm3] 3R_17505270_SNP [dm6]	G	T	2.010e^-4	0.728	INTRON Dscam3
X	22004377	X_22004377_SNP [dm3] X_22602541_SNP [dm6]	A	C	2.027e^-4	0.728	INTRON Cda4
3L	12160357	3L_12160357_SNP [dm3] 3L_12167257_SNP [dm6]	A	G	2.028e^-4	0.728	SYNONYMOUS_CODING Rh7
2L	2971185	2L_2971185_SNP [dm3] 2L_2971185_SNP [dm6]	C	T	2.028e^-4	0.728	NON_SYNONYMOUS_CODING Rrp1	TF binding site mE1_TFBS_sens
3R	26074293	3R_26074293_SNP [dm3] 3R_30248571_SNP [dm6]	C	T	2.030e^-4	0.728	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8764932	3R_8764932_SNP [dm3] 3R_12939210_SNP [dm6]	T	A	2.032e^-4	0.728	INTERGENIC
3R	6667384	3R_6667384_SNP [dm3] 3R_10841662_SNP [dm6]	G	T	2.045e^-4	0.728	INTRON Cad86C
3L	14731830	3L_14731830_SNP [dm3] 3L_14738730_SNP [dm6]	A	G	2.045e^-4	0.728	INTRON ome
3R	13928376	3R_13928376_SNP [dm3] 3R_18102654_SNP [dm6]	T	A	2.047e^-4	0.728	INTRON sr
2L	16702284	2L_16702284_SNP [dm3] 2L_16702284_SNP [dm6]	G	A	2.048e^-4	0.728	EXON CR43670	TF binding site mE1_TFBS_sens
2R	16746750	2R_16746750_SNP [dm3] 2R_20859245_SNP [dm6]	A	T	2.054e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14426175	2L_14426175_SNP [dm3] 2L_14426175_SNP [dm6]	A	C	2.055e^-4	0.728	UPSTREAM Cpr35B INTERGENIC
X	5960690	X_5960690_SNP [dm3] X_6066657_SNP [dm6]	A	T	2.063e^-4	0.73	UPSTREAM CG43115 INTERGENIC
2L	21962274	2L_21962274_SNP [dm3] 2L_21962274_SNP [dm6]	G	A	2.077e^-4	0.733	INTERGENIC
2R	18923418	2R_18923418_SNP [dm3] 2R_23035895_SNP [dm6]	C	A	2.079e^-4	0.733	INTRON twi & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19022313	2R_19022313_SNP [dm3] 2R_23134790_SNP [dm6]	G	T	2.096e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	7257869	3L_7257869_SNP [dm3] 3L_7264769_SNP [dm6]	A	G	2.099e^-4	0.736	UPSTREAM CG14830 INTERGENIC
3L	10711607	3L_10711607_SNP [dm3] 3L_10718507_SNP [dm6]	G	A	2.105e^-4	0.736	INTERGENIC
3R	21516698	3R_21516698_SNP [dm3] 3R_25690976_SNP [dm6]	G	C	2.105e^-4	0.736	INTERGENIC
X	18646751	X_18646751_SNP [dm3] X_18752718_SNP [dm6]	T	C	2.109e^-4	0.736	INTERGENIC
2R	9413004	2R_9413004_SNP [dm3] 2R_13525499_SNP [dm6]	C	T	2.121e^-4	0.737	SYNONYMOUS_CODING CG13332 INTRON Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10304415	3L_10304415_SNP [dm3] 3L_10311315_SNP [dm6]	T	C	2.124e^-4	0.737	INTERGENIC
3L	8074825	3L_8074825_SNP [dm3] 3L_8081725_SNP [dm6]	A	G	2.130e^-4	0.737	DOWNSTREAM CR43974 INTRON Ect4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18937701	2R_18937701_SNP [dm3] 2R_23050178_SNP [dm6]	C	T	2.139e^-4	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7902422	2L_7902422_SNP [dm3] 2L_7902422_SNP [dm6]	T	C	2.139e^-4	0.737	INTRON Snoo
X	6100452	X_6100452_SNP [dm3] X_6206419_SNP [dm6]	T	C	2.142e^-4	0.737	INTERGENIC
2R	9901444	2R_9901444_SNP [dm3] 2R_14013939_SNP [dm6]	G	A	2.142e^-4	0.737	INTRON mam	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6667385	3R_6667385_SNP [dm3] 3R_10841663_SNP [dm6]	C	A	2.143e^-4	0.737	INTRON Cad86C
3L	10304551	3L_10304551_SNP [dm3] 3L_10311451_SNP [dm6]	C	G	2.146e^-4	0.737	INTERGENIC
X	6100459	X_6100459_SNP [dm3] X_6206426_SNP [dm6]	G	C	2.172e^-4	0.74	INTERGENIC
3R	21966323	3R_21966323_SNP [dm3] 3R_26140601_SNP [dm6]	T	G	2.175e^-4	0.74	INTERGENIC
2R	4296758	2R_4296758_SNP [dm3] 2R_8409253_SNP [dm6]	T	C	2.177e^-4	0.74	INTRON CG2121	TF binding site mE1_TFBS_HSA
3R	2899616	3R_2899616_SNP [dm3] 3R_7073894_SNP [dm6]	A	G	2.180e^-4	0.74	SYNONYMOUS_CODING CG1104 UPSTREAM CG1943	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	12574702	3R_12574702_SNP [dm3] 3R_16748980_SNP [dm6]	T	C	2.181e^-4	0.74	INTRON bxd	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3432685	2L_3432685_DEL [dm3] 2L_3432685_DEL [dm6]	GCATGTCCTTTGCGG...	G	2.185e^-4	0.74	INTERGENIC
3R	26464615	3R_26464615_SNP [dm3] 3R_30638893_SNP [dm6]	C	G	2.185e^-4	0.74	INTERGENIC
3L	11244310	3L_11244310_SNP [dm3] 3L_11251210_SNP [dm6]	A	T	2.187e^-4	0.74	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	13671211	2R_13671211_SNP [dm3] 2R_17783706_SNP [dm6]	A	G	2.189e^-4	0.74	DOWNSTREAM mir-31a INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3963620	2L_3963620_SNP [dm3] 2L_3963620_SNP [dm6]	G	C	2.201e^-4	0.742	INTRON fred	TF binding site mE1_TFBS_bab1
3R	16538643	3R_16538643_SNP [dm3] 3R_20712921_SNP [dm6]	C	A	2.210e^-4	0.742	INTRON Oamb
X	3821754	X_3821754_SNP [dm3] X_3927721_SNP [dm6]	A	G	2.235e^-4	0.742	INTRON CG42541
X	18204460	X_18204460_INS [dm3] X_18310427_INS [dm6]	T	TG	2.239e^-4	0.742	DOWNSTREAM CR45608 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21845198	3R_21845198_SNP [dm3] 3R_26019476_SNP [dm6]	C	T	2.240e^-4	0.742	UPSTREAM CR43643 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	25520255	3R_25520255_SNP [dm3] 3R_29694533_SNP [dm6]	C	A	2.251e^-4	0.742	INTRON dmrt99B
3L	12041216	3L_12041216_SNP [dm3] 3L_12048116_SNP [dm6]	G	C	2.260e^-4	0.742	INTRON rols
3R	24165971	3R_24165971_SNP [dm3] 3R_28340249_SNP [dm6]	A	G	2.271e^-4	0.742	UPSTREAM Moca-cyp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10003697	X_10003697_INS [dm3] X_10109664_INS [dm6]	A	AAA	2.278e^-4	0.742	INTRON RhoU
3R	7232157	3R_7232157_SNP [dm3] 3R_11406435_SNP [dm6]	C	A	2.295e^-4	0.742	UTR_3_PRIME pros
3L	19460963	3L_19460963_SNP [dm3] 3L_19467863_SNP [dm6]	A	G	2.299e^-4	0.742	UTR_3_PRIME CG32214 UPSTREAM CG14096
X	12234988	X_12234988_SNP [dm3] X_12340955_SNP [dm6]	T	C	2.301e^-4	0.742	INTERGENIC
X	20886980	X_20886980_SNP [dm3] X_21015953_SNP [dm6]	T	A	2.301e^-4	0.742	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18170410	3L_18170410_SNP [dm3] 3L_18177310_SNP [dm6]	T	A	2.302e^-4	0.742	INTRON W	TF binding site BDTNP1_TFBS_twi
2L	3638887	2L_3638887_SNP [dm3] 2L_3638887_SNP [dm6]	A	G	2.309e^-4	0.742	INTRON for	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12577096	3R_12577096_SNP [dm3] 3R_16751374_SNP [dm6]	T	C	2.322e^-4	0.742	UPSTREAM CG31275 INTRON bxd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	7734865	2R_7734865_SNP [dm3] 2R_11847360_SNP [dm6]	T	A	2.323e^-4	0.742	INTRON Sln
3L	10421332	3L_10421332_SNP [dm3] 3L_10428232_SNP [dm6]	T	A	2.328e^-4	0.742	INTERGENIC	TF binding site mE1_TFBS_bab1
X	20359014	X_20359014_DEL [dm3] X_20487987_DEL [dm6]	AG	A	2.331e^-4	0.742	INTRON RhoGAP19D
3R	16472148	3R_16472148_SNP [dm3] 3R_20646426_SNP [dm6]	T	C	2.343e^-4	0.742	SYNONYMOUS_CODING GluRIIE
3R	15262026	3R_15262026_SNP [dm3] 3R_19436304_SNP [dm6]	T	C	2.344e^-4	0.742	INTRON CG31221
X	18638223	X_18638223_SNP [dm3] X_18744190_SNP [dm6]	A	G	2.351e^-4	0.742	INTERGENIC
2R	12125759	2R_12125759_DEL [dm3] 2R_16238254_DEL [dm6]	CAAA	C	2.352e^-4	0.742	UTR_3_PRIME krimp DOWNSTREAM CG3687
3L	2398289	3L_2398289_SNP [dm3] 3L_2398289_SNP [dm6]	T	C	2.354e^-4	0.742	INTRON CG45186	TF binding site mE1_TFBS_inv
3L	11726071	3L_11726071_SNP [dm3] 3L_11732971_SNP [dm6]	G	A	2.356e^-4	0.742	NON_SYNONYMOUS_CODING CG32087 DOWNSTREAM CG32088 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2019856	2L_2019856_SNP [dm3] 2L_2019856_SNP [dm6]	A	T	2.361e^-4	0.742	INTRON CG4238	TF binding site BDTNP1_TFBS_da
3R	16412278	3R_16412278_SNP [dm3] 3R_20586556_SNP [dm6]	G	A	2.365e^-4	0.742	SYNONYMOUS_CODING Sep2 UPSTREAM CG16953	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	18013818	3L_18013818_SNP [dm3] 3L_18020718_SNP [dm6]	G	T	2.365e^-4	0.742	INTRON Eip75B
3R	6667399	3R_6667399_SNP [dm3] 3R_10841677_SNP [dm6]	G	T	2.369e^-4	0.742	INTRON Cad86C
2R	7263870	2R_7263870_SNP [dm3] 2R_11376365_SNP [dm6]	T	C	2.371e^-4	0.742	SYNONYMOUS_CODING CG13203 DOWNSTREAM Tsp47F	TF binding site mE1_TFBS_chinmo
3R	18793704	3R_18793704_SNP [dm3] 3R_22967982_SNP [dm6]	C	T	2.374e^-4	0.742	DOWNSTREAM Tpl94D INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5215854	3L_5215854_SNP [dm3] 3L_5222754_SNP [dm6]	A	G	2.376e^-4	0.742	INTRON shep
3R	15764947	3R_15764947_SNP [dm3] 3R_19939225_SNP [dm6]	C	A	2.383e^-4	0.742	INTRON Hs6st
3R	25990553	3R_25990553_SNP [dm3] 3R_30164831_SNP [dm6]	A	T	2.383e^-4	0.742	UTR_3_PRIME CG31030
X	7383068	X_7383068_SNP [dm3] X_7489035_SNP [dm6]	T	A	2.388e^-4	0.742	UTR_3_PRIME CG43278 DOWNSTREAM CR45534
X	18204407	X_18204407_SNP [dm3] X_18310374_SNP [dm6]	T	A	2.388e^-4	0.742	DOWNSTREAM CR45608 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	18204416	X_18204416_SNP [dm3] X_18310383_SNP [dm6]	T	A	2.388e^-4	0.742	DOWNSTREAM CR45608 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	18204418	X_18204418_SNP [dm3] X_18310385_SNP [dm6]	T	C	2.388e^-4	0.742	DOWNSTREAM CR45608 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	18204482	X_18204482_SNP [dm3] X_18310449_SNP [dm6]	C	A	2.392e^-4	0.742	DOWNSTREAM CR45608 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	2983095	2L_2983095_SNP [dm3] 2L_2983095_SNP [dm6]	G	A	2.393e^-4	0.742	SYNONYMOUS_CODING Chd1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6405042	2L_6405042_SNP [dm3] 2L_6405042_SNP [dm6]	C	T	2.394e^-4	0.742	INTRON CG42368
3L	20784129	3L_20784129_SNP [dm3] 3L_20791029_SNP [dm6]	C	A	2.398e^-4	0.742	SYNONYMOUS_CODING Six4
2L	6316246	2L_6316246_SNP [dm3] 2L_6316246_SNP [dm6]	A	T	2.401e^-4	0.742	INTRON Ddr
2L	6018469	2L_6018469_SNP [dm3] 2L_6018469_SNP [dm6]	G	T	2.407e^-4	0.742	INTRON H2.0
3L	18322375	3L_18322375_SNP [dm3] 3L_18329275_SNP [dm6]	T	A	2.414e^-4	0.742	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16609854	2L_16609854_SNP [dm3] 2L_16609854_SNP [dm6]	C	T	2.414e^-4	0.742	SYNONYMOUS_CODING CG4631 INTRON CG42389
2R	14447694	2R_14447694_SNP [dm3] 2R_18560189_SNP [dm6]	G	T	2.416e^-4	0.742	SYNONYMOUS_CODING GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12189904	3R_12189904_SNP [dm3] 3R_16364182_SNP [dm6]	A	C	2.418e^-4	0.742	INTRON CG14880
2L	15147885	2L_15147885_SNP [dm3] 2L_15147885_SNP [dm6]	C	T	2.419e^-4	0.742	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	6922439	2R_6922439_SNP [dm3] 2R_11034934_SNP [dm6]	T	G	2.421e^-4	0.742	INTRON luna	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
4	738528	4_738528_SNP [dm3] 4_717902_SNP [dm6]	T	C	2.423e^-4	0.742	NON_SYNONYMOUS_CODING ey	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22761405	3L_22761405_SNP [dm3] 3L_22768305_SNP [dm6]	C	T	2.426e^-4	0.742	INTRON SPoCk
3R	21845170	3R_21845170_SNP [dm3] 3R_26019448_SNP [dm6]	T	C	2.426e^-4	0.742	UPSTREAM CR43643 INTERGENIC	TF binding site BDTNP1_TFBS_da
X	5475941	X_5475941_SNP [dm3] X_5581908_SNP [dm6]	T	A	2.429e^-4	0.742	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8990357	3L_8990357_SNP [dm3] 3L_8997257_SNP [dm6]	C	T	2.431e^-4	0.742	UPSTREAM smg & 1 other INTRON smg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3L	18322385	3L_18322385_SNP [dm3] 3L_18329285_SNP [dm6]	T	C	2.434e^-4	0.742	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9901437	2R_9901437_SNP [dm3] 2R_14013932_SNP [dm6]	C	T	2.440e^-4	0.742	INTRON mam	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15670969	3L_15670969_SNP [dm3] 3L_15677869_SNP [dm6]	C	T	2.445e^-4	0.742	INTERGENIC
X	12414134	X_12414134_SNP [dm3] X_12520101_SNP [dm6]	T	C	2.448e^-4	0.742	SYNONYMOUS_CODING CG43921	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	18215848	X_18215848_SNP [dm3] X_18321815_SNP [dm6]	C	A	2.454e^-4	0.742	UPSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11244309	3L_11244309_SNP [dm3] 3L_11251209_SNP [dm6]	C	G	2.456e^-4	0.742	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	20129915	2R_20129915_SNP [dm3] 2R_24242392_SNP [dm6]	C	A	2.459e^-4	0.742	UPSTREAM nord INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15685309	3R_15685309_SNP [dm3] 3R_19859587_SNP [dm6]	T	C	2.461e^-4	0.742	INTRON Ire1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	10939994	3L_10939994_SNP [dm3] 3L_10946894_SNP [dm6]	C	A	2.462e^-4	0.742	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7902706	2L_7902706_SNP [dm3] 2L_7902706_SNP [dm6]	T	A	2.464e^-4	0.742	INTRON Snoo
3L	5613200	3L_5613200_SNP [dm3] 3L_5620100_SNP [dm6]	T	A	2.472e^-4	0.742	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
3L	13301403	3L_13301403_SNP [dm3] 3L_13308303_SNP [dm6]	T	A	2.476e^-4	0.742	INTERGENIC
2R	9901346	2R_9901346_SNP [dm3] 2R_14013841_SNP [dm6]	G	T	2.477e^-4	0.742	INTRON mam	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1186676	3L_1186676_SNP [dm3] 3L_1186676_SNP [dm6]	C	G	2.478e^-4	0.742	INTERGENIC
3R	8691605	3R_8691605_SNP [dm3] 3R_12865883_SNP [dm6]	G	A	2.481e^-4	0.742	INTERGENIC
X	4911303	X_4911303_SNP [dm3] X_5017270_SNP [dm6]	T	A	2.482e^-4	0.742	INTRON CR44833
X	7250110	X_7250110_INS [dm3] X_7356077_INS [dm6]	G	GC	2.482e^-4	0.742	INTRON CR44357 & 1 other
3L	18216668	3L_18216668_SNP [dm3] 3L_18223568_SNP [dm6]	G	A	2.494e^-4	0.745	INTERGENIC	TF binding site mE1_TFBS_inv
2R	9901460	2R_9901460_SNP [dm3] 2R_14013955_SNP [dm6]	C	T	2.501e^-4	0.745	INTRON mam	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26686990	3R_26686990_SNP [dm3] 3R_30861268_SNP [dm6]	G	A	2.503e^-4	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20844843	3R_20844843_SNP [dm3] 3R_25019121_SNP [dm6]	C	A	2.516e^-4	0.746	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9762274	3L_9762274_SNP [dm3] 3L_9769174_SNP [dm6]	C	T	2.521e^-4	0.746	INTRON CG8177
3L	7991978	3L_7991978_INS [dm3] 3L_7998878_INS [dm6]	A	AAA	2.527e^-4	0.746	INTRON nmo
X	18642836	X_18642836_SNP [dm3] X_18748803_SNP [dm6]	T	G	2.534e^-4	0.746	UPSTREAM CG12609 INTERGENIC
3R	6667371	3R_6667371_INS [dm3] 3R_10841649_INS [dm6]	TT	CAC	2.536e^-4	0.746	INTRON Cad86C
3R	6667374	3R_6667374_SNP [dm3] 3R_10841652_SNP [dm6]	G	A	2.536e^-4	0.746	INTRON Cad86C
2R	14795174	2R_14795174_SNP [dm3] 2R_18907669_SNP [dm6]	C	G	2.539e^-4	0.746	INTRON sano	TF binding site mE1_TFBS_cad
3R	16352641	3R_16352641_SNP [dm3] 3R_20526919_SNP [dm6]	G	A	2.539e^-4	0.746	INTERGENIC
2L	9167367	2L_9167367_SNP [dm3] 2L_9167367_SNP [dm6]	A	T	2.544e^-4	0.746	UTR_5_PRIME tai UPSTREAM CG9586	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_zfh1
3L	9288078	3L_9288078_SNP [dm3] 3L_9294978_SNP [dm6]	C	A	2.555e^-4	0.749	INTERGENIC
3L	17165994	3L_17165994_DEL [dm3] 3L_17172894_DEL [dm6]	CCGAA	C	2.560e^-4	0.749	INTRON Rbp6
2R	13100201	2R_13100201_SNP [dm3] 2R_17212696_SNP [dm6]	C	T	2.570e^-4	0.75	INTERGENIC
3R	13893398	3R_13893398_SNP [dm3] 3R_18067676_SNP [dm6]	C	T	2.584e^-4	0.75	INTERGENIC
3L	6604421	3L_6604421_SNP [dm3] 3L_6611321_SNP [dm6]	T	A	2.585e^-4	0.75	INTRON CG8398
2L	1568321	2L_1568321_SNP [dm3] 2L_1568321_SNP [dm6]	G	A	2.587e^-4	0.75	INTRON haf
2L	7624752	2L_7624752_SNP [dm3] 2L_7624752_SNP [dm6]	G	A	2.595e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	1904206	2R_1904206_SNP [dm3] 2R_6016701_SNP [dm6]	C	T	2.596e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
X	8287403	X_8287403_SNP [dm3] X_8393370_SNP [dm6]	G	A	2.596e^-4	0.75	INTERGENIC
3L	13308231	3L_13308231_SNP [dm3] 3L_13315131_SNP [dm6]	T	A	2.600e^-4	0.75	INTERGENIC
3L	13834316	3L_13834316_SNP [dm3] 3L_13841216_SNP [dm6]	A	T	2.603e^-4	0.75	UTR_3_PRIME CG8757	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19468103	3L_19468103_SNP [dm3] 3L_19475003_SNP [dm6]	A	G	2.605e^-4	0.75	UPSTREAM CG32213 DOWNSTREAM CG18294 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	4550913	3L_4550913_SNP [dm3] 3L_4550913_SNP [dm6]	T	C	2.610e^-4	0.751	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7156157	3R_7156157_SNP [dm3] 3R_11330435_SNP [dm6]	G	T	2.618e^-4	0.752	INTRON pros	TF binding site BDTNP1_TFBS_dl
3R	5746921	3R_5746921_SNP [dm3] 3R_9921199_SNP [dm6]	G	A	2.626e^-4	0.753	INTRON Glut4EF
3L	18693672	3L_18693672_SNP [dm3] 3L_18700572_SNP [dm6]	A	G	2.634e^-4	0.753	INTERGENIC
2R	16565953	2R_16565953_SNP [dm3] 2R_20678448_SNP [dm6]	G	A	2.639e^-4	0.753	INTERGENIC
3R	2820006	3R_2820006_SNP [dm3] 3R_6994284_SNP [dm6]	C	G	2.652e^-4	0.753	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8823133	3R_8823133_SNP [dm3] 3R_12997411_SNP [dm6]	C	A	2.655e^-4	0.753	NON_SYNONYMOUS_CODING CG44194 UTR_5_PRIME CG17327 UPSTREAM CG7518 DOWNSTREAM CG7488	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2R	12198784	2R_12198784_SNP [dm3] 2R_16311279_SNP [dm6]	A	G	2.664e^-4	0.753	INTRON Nox	TF binding site mE1_TFBS_chinmo
2L	13116362	2L_13116362_SNP [dm3] 2L_13116362_SNP [dm6]	T	A	2.669e^-4	0.753	INTERGENIC
3R	25754351	3R_25754351_SNP [dm3] 3R_29928629_SNP [dm6]	C	T	2.672e^-4	0.753	UTR_3_PRIME CG15522 DOWNSTREAM CG31202	TF binding site mE1_TFBS_chinmo
3R	489992	3R_489992_SNP [dm3] 3R_4664270_SNP [dm6]	A	C	2.675e^-4	0.753	INTRON CG43427	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	19613021	2R_19613021_SNP [dm3] 2R_23725498_SNP [dm6]	A	T	2.675e^-4	0.753	INTRON Sesn
2L	17875317	2L_17875317_SNP [dm3] 2L_17875317_SNP [dm6]	T	A	2.679e^-4	0.753	UPSTREAM CadN2 INTERGENIC
3R	13684101	3R_13684101_SNP [dm3] 3R_17858379_SNP [dm6]	T	A	2.710e^-4	0.753	INTRON tinc
X	9757147	X_9757147_SNP [dm3] X_9863114_SNP [dm6]	C	G	2.713e^-4	0.753	INTERGENIC
2R	18756956	2R_18756956_SNP [dm3] 2R_22869433_SNP [dm6]	A	C	2.714e^-4	0.753	SYNONYMOUS_CODING fd59A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12125777	2R_12125777_SNP [dm3] 2R_16238272_SNP [dm6]	T	A	2.718e^-4	0.753	UTR_3_PRIME krimp DOWNSTREAM CG3687
3R	16673129	3R_16673129_SNP [dm3] 3R_20847407_SNP [dm6]	A	C	2.718e^-4	0.753	SYNONYMOUS_CODING CG15696	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26369789	3R_26369789_SNP [dm3] 3R_30544067_SNP [dm6]	A	G	2.727e^-4	0.753	INTRON tmod
X	4912107	X_4912107_SNP [dm3] X_5018074_SNP [dm6]	C	G	2.730e^-4	0.753	INTRON CR44833	TF binding site mE1_TFBS_inv
3L	14960014	3L_14960014_SNP [dm3] 3L_14966914_SNP [dm6]	C	A	2.731e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8328631	3L_8328631_SNP [dm3] 3L_8335531_SNP [dm6]	A	C	2.736e^-4	0.753	INTERGENIC
2R	19628394	2R_19628394_SNP [dm3] 2R_23740871_SNP [dm6]	T	G	2.737e^-4	0.753	INTRON egl
X	1537780	X_1537780_SNP [dm3] X_1643747_SNP [dm6]	T	C	2.739e^-4	0.753	SYNONYMOUS_CODING br INTRON Mur2B & 1 other
3L	13301395	3L_13301395_DEL [dm3] 3L_13308295_DEL [dm6]	AA	A	2.744e^-4	0.753	INTERGENIC
3L	7011233	3L_7011233_SNP [dm3] 3L_7018133_SNP [dm6]	G	T	2.746e^-4	0.753	INTRON Mp
X	16563487	X_16563487_SNP [dm3] X_16669454_SNP [dm6]	A	G	2.746e^-4	0.753	DOWNSTREAM r INTRON CG13012
2R	6921226	2R_6921226_SNP [dm3] 2R_11033721_SNP [dm6]	C	T	2.747e^-4	0.753	INTRON luna	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	16008401	2L_16008401_SNP [dm3] 2L_16008401_SNP [dm6]	C	T	2.759e^-4	0.753	INTRON beat-Ic	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10303417	3L_10303417_SNP [dm3] 3L_10310317_SNP [dm6]	C	A	2.765e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9141198	2L_9141198_SNP [dm3] 2L_9141198_SNP [dm6]	C	T	2.777e^-4	0.753	INTRON CG32982
X	20886849	X_20886849_SNP [dm3] X_21015822_SNP [dm6]	G	A	2.778e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	21651066	3R_21651066_SNP [dm3] 3R_25825344_SNP [dm6]	T	C	2.786e^-4	0.753	UPSTREAM CR44949 INTERGENIC
2R	19022085	2R_19022085_SNP [dm3] 2R_23134562_SNP [dm6]	T	A	2.788e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	2549453	3R_2549453_SNP [dm3] 3R_6723731_SNP [dm6]	T	C	2.793e^-4	0.753	INTRON pb	enhancer mE1_CBP_Enhancers regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	15277889	2L_15277889_SNP [dm3] 2L_15277889_SNP [dm6]	C	T	2.793e^-4	0.753	INTRON CR43682
2L	10875772	2L_10875772_SNP [dm3] 2L_10875772_SNP [dm6]	C	T	2.798e^-4	0.753	INTERGENIC
3L	10303569	3L_10303569_SNP [dm3] 3L_10310469_SNP [dm6]	A	G	2.803e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	15671030	3L_15671030_SNP [dm3] 3L_15677930_SNP [dm6]	T	C	2.808e^-4	0.753	INTERGENIC
2R	17768035	2R_17768035_SNP [dm3] 2R_21880530_SNP [dm6]	C	T	2.811e^-4	0.753	DOWNSTREAM PpN58A INTRON Fili
3R	27011029	3R_27011029_SNP [dm3] 3R_31185307_SNP [dm6]	C	T	2.816e^-4	0.753	INTRON mesh
X	18210930	X_18210930_SNP [dm3] X_18316897_SNP [dm6]	C	T	2.820e^-4	0.753	UPSTREAM CG6023 INTRON CG6023	TF binding site mE1_TFBS_HSA
2L	6602307	2L_6602307_SNP [dm3] 2L_6602307_SNP [dm6]	G	A	2.823e^-4	0.753	INTERGENIC
3L	23259233	3L_23259233_SNP [dm3] 3L_23266133_SNP [dm6]	A	T	2.824e^-4	0.753	INTRON nAChRalpha4	transposable element FlyBase
3R	4210252	3R_4210252_SNP [dm3] 3R_8384530_SNP [dm6]	A	G	2.829e^-4	0.753	UTR_3_PRIME CG45263 INTRON CG45263
2R	2727721	2R_2727721_SNP [dm3] 2R_6840216_SNP [dm6]	A	G	2.834e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12250734	2L_12250734_SNP [dm3] 2L_12250734_SNP [dm6]	C	T	2.836e^-4	0.753	INTRON aret
2R	5635190	2R_5635190_SNP [dm3] 2R_9747685_SNP [dm6]	A	G	2.839e^-4	0.753	UTR_5_PRIME sqa
3L	6176900	3L_6176900_SNP [dm3] 3L_6183800_SNP [dm6]	C	A	2.846e^-4	0.753	SYNONYMOUS_CODING D19B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3L	11244236	3L_11244236_SNP [dm3] 3L_11251136_SNP [dm6]	A	G	2.853e^-4	0.753	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	22231261	3R_22231261_SNP [dm3] 3R_26405539_SNP [dm6]	G	A	2.858e^-4	0.753	INTERGENIC
2R	6922721	2R_6922721_SNP [dm3] 2R_11035216_SNP [dm6]	A	T	2.868e^-4	0.753	INTRON luna	TF binding site mE1_TFBS_cad
3L	23766092	3L_23766092_DEL [dm3] 3L_23772992_DEL [dm6]	TC	T	2.871e^-4	0.753	INTERGENIC
2L	7306132	2L_7306132_SNP [dm3] 2L_7306132_SNP [dm6]	T	A	2.871e^-4	0.753	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	5905884	X_5905884_SNP [dm3] X_6011851_SNP [dm6]	A	C	2.874e^-4	0.753	INTRON mab-21
3L	1369476	3L_1369476_SNP [dm3] 3L_1369476_SNP [dm6]	G	A	2.876e^-4	0.753	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	9901445	2R_9901445_SNP [dm3] 2R_14013940_SNP [dm6]	A	G	2.879e^-4	0.753	INTRON mam	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11320136	2R_11320136_INS [dm3] 2R_15432631_INS [dm6]	T	TT	2.880e^-4	0.753	INTRON CG43729
2R	17258402	2R_17258402_DEL [dm3] 2R_21370897_DEL [dm6]	ATAG	A	2.881e^-4	0.753	INTRON cv-2
3R	23033861	3R_23033861_SNP [dm3] 3R_27208139_SNP [dm6]	C	T	2.882e^-4	0.753	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7306147	2L_7306147_SNP [dm3] 2L_7306147_SNP [dm6]	T	C	2.882e^-4	0.753	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15033409	3L_15033409_SNP [dm3] 3L_15040309_SNP [dm6]	A	C	2.886e^-4	0.753	INTRON Sytbeta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8987689	3R_8987689_SNP [dm3] 3R_13161967_SNP [dm6]	C	T	2.897e^-4	0.753	INTRON timeout
3L	2471106	3L_2471106_SNP [dm3] 3L_2471106_SNP [dm6]	T	C	2.902e^-4	0.753	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	2471158	3L_2471158_SNP [dm3] 3L_2471158_SNP [dm6]	T	A	2.902e^-4	0.753	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	10456431	3L_10456431_SNP [dm3] 3L_10463331_SNP [dm6]	G	A	2.907e^-4	0.753	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	7010422	3L_7010422_SNP [dm3] 3L_7017322_SNP [dm6]	T	A	2.911e^-4	0.753	INTRON Mp
3L	18322347	3L_18322347_SNP [dm3] 3L_18329247_SNP [dm6]	G	A	2.912e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13301398	3L_13301398_SNP [dm3] 3L_13308298_SNP [dm6]	A	G	2.922e^-4	0.753	INTERGENIC
2R	15385771	2R_15385771_SNP [dm3] 2R_19498266_SNP [dm6]	A	C	2.934e^-4	0.753	SYNONYMOUS_CODING CG15120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11525951	3L_11525951_SNP [dm3] 3L_11532851_SNP [dm6]	A	G	2.944e^-4	0.753	INTRON Mob2
3L	22355457	3L_22355457_SNP [dm3] 3L_22362357_SNP [dm6]	C	T	2.948e^-4	0.753	INTRON Ten-m
2R	14025576	2R_14025576_SNP [dm3] 2R_18138071_SNP [dm6]	C	T	2.951e^-4	0.753	SYNONYMOUS_CODING Pcl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18144035	3L_18144035_SNP [dm3] 3L_18150935_SNP [dm6]	A	G	2.955e^-4	0.753	INTRON CG7330
X	7381236	X_7381236_SNP [dm3] X_7487203_SNP [dm6]	A	C	2.956e^-4	0.753	UPSTREAM CR45534 INTERGENIC
3R	26072791	3R_26072791_SNP [dm3] 3R_30247069_SNP [dm6]	A	C	2.967e^-4	0.753	UPSTREAM CG9733 DOWNSTREAM tRNA:CR31383 INTERGENIC
3R	26072793	3R_26072793_SNP [dm3] 3R_30247071_SNP [dm6]	A	T	2.967e^-4	0.753	UPSTREAM CG9733 DOWNSTREAM tRNA:CR31383 INTERGENIC
3R	20844420	3R_20844420_SNP [dm3] 3R_25018698_SNP [dm6]	T	G	2.970e^-4	0.753	NON_SYNONYMOUS_CODING tnc
3R	14036411	3R_14036411_SNP [dm3] 3R_18210689_SNP [dm6]	A	C	2.972e^-4	0.753	INTRON CG7985
X	10872382	X_10872382_SNP [dm3] X_10978349_SNP [dm6]	G	A	2.973e^-4	0.753	INTRON CG42339
2R	6795946	2R_6795946_SNP [dm3] 2R_10908441_SNP [dm6]	G	C	2.974e^-4	0.753	INTERGENIC
2R	18063372	2R_18063372_SNP [dm3] 2R_22175867_SNP [dm6]	G	A	2.979e^-4	0.753	NON_SYNONYMOUS_CODING CG6758 EXON CR45151	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	14560769	2R_14560769_SNP [dm3] 2R_18673264_SNP [dm6]	C	A	2.984e^-4	0.753	UTR_5_PRIME edl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6844518	2R_6844518_SNP [dm3] 2R_10957013_SNP [dm6]	A	C	2.988e^-4	0.753	INTERGENIC
3R	12577066	3R_12577066_SNP [dm3] 3R_16751344_SNP [dm6]	T	C	2.989e^-4	0.753	UPSTREAM CG31275 INTRON bxd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	5960684	X_5960684_DEL [dm3] X_6066651_DEL [dm6]	TTGT	T	2.995e^-4	0.753	UPSTREAM CG43115 INTERGENIC
X	18212580	X_18212580_SNP [dm3] X_18318547_SNP [dm6]	A	T	2.996e^-4	0.753	INTRON CG6023
3L	6890744	3L_6890744_SNP [dm3] 3L_6897644_SNP [dm6]	C	T	3.010e^-4	0.753	INTERGENIC
2R	5590973	2R_5590973_SNP [dm3] 2R_9703468_SNP [dm6]	T	A	3.018e^-4	0.753	UPSTREAM CG30002 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	9901416	2R_9901416_SNP [dm3] 2R_14013911_SNP [dm6]	C	T	3.019e^-4	0.753	INTRON mam	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	3800920	X_3800920_SNP [dm3] X_3906887_SNP [dm6]	G	A	3.021e^-4	0.753	NON_SYNONYMOUS_CODING CG42541	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14094549	2L_14094549_SNP [dm3] 2L_14094549_SNP [dm6]	T	A	3.023e^-4	0.753	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	24165640	3R_24165640_INS [dm3] 3R_28339918_INS [dm6]	T	TT	3.026e^-4	0.753	UPSTREAM Moca-cyp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9976406	3R_9976406_SNP [dm3] 3R_14150684_SNP [dm6]	G	A	3.028e^-4	0.753	SYNONYMOUS_CODING CG14355	TF binding site mE1_TFBS_cad
X	6962176	X_6962176_SNP [dm3] X_7068143_SNP [dm6]	T	C	3.038e^-4	0.753	INTERGENIC
3R	8736578	3R_8736578_SNP [dm3] 3R_12910856_SNP [dm6]	C	T	3.043e^-4	0.753	SYNONYMOUS_CODING CG10909	TF binding site mE1_TFBS_sens
3R	21083395	3R_21083395_SNP [dm3] 3R_25257673_SNP [dm6]	C	A	3.046e^-4	0.753	NON_SYNONYMOUS_CODING Nup358	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19537382	3R_19537382_SNP [dm3] 3R_23711660_SNP [dm6]	A	C	3.049e^-4	0.753	NON_SYNONYMOUS_CODING CG10300 DOWNSTREAM CG10301
3R	12577200	3R_12577200_SNP [dm3] 3R_16751478_SNP [dm6]	A	C	3.054e^-4	0.753	UPSTREAM CG31275 INTRON bxd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9766624	3L_9766624_DEL [dm3] 3L_9773524_DEL [dm6]	AA	C	3.060e^-4	0.753	UPSTREAM CG8177 INTRON CG8177
3L	1896020	3L_1896020_SNP [dm3] 3L_1896020_SNP [dm6]	T	A	3.060e^-4	0.753	INTRON CG1887	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2R	13955109	2R_13955109_SNP [dm3] 2R_18067604_SNP [dm6]	G	C	3.068e^-4	0.753	INTRON CG34386
3L	10975902	3L_10975902_SNP [dm3] 3L_10982802_SNP [dm6]	A	G	3.075e^-4	0.753	SYNONYMOUS_CODING klu	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9544007	3L_9544007_SNP [dm3] 3L_9550907_SNP [dm6]	C	A	3.083e^-4	0.753	INTRON CG42673
2L	7339610	2L_7339610_SNP [dm3] 2L_7339610_SNP [dm6]	G	A	3.085e^-4	0.753	INTRON Wnt6
3L	10940052	3L_10940052_SNP [dm3] 3L_10946952_SNP [dm6]	C	T	3.100e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_inv
3R	11828196	3R_11828196_SNP [dm3] 3R_16002474_SNP [dm6]	A	G	3.100e^-4	0.753	SYNONYMOUS_CODING srp INTRON srp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14699066	3R_14699066_SNP [dm3] 3R_18873344_SNP [dm6]	G	T	3.104e^-4	0.753	INTERGENIC
3R	7420392	3R_7420392_SNP [dm3] 3R_11594670_SNP [dm6]	G	C	3.121e^-4	0.753	INTRON Jupiter
3R	4636223	3R_4636223_SNP [dm3] 3R_8810501_SNP [dm6]	A	T	3.124e^-4	0.753	UPSTREAM CG9837 INTRON CG9837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_zfh1
3R	12576942	3R_12576942_SNP [dm3] 3R_16751220_SNP [dm6]	G	A	3.124e^-4	0.753	SYNONYMOUS_CODING CG31275 INTRON bxd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5256907	2L_5256907_SNP [dm3] 2L_5256907_SNP [dm6]	C	T	3.125e^-4	0.753	INTRON tkv	TF binding site mE1_TFBS_cad
3L	4120071	3L_4120071_SNP [dm3] 3L_4120071_SNP [dm6]	A	G	3.130e^-4	0.753	INTRON Chd64	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3L	7701722	3L_7701722_SNP [dm3] 3L_7708622_SNP [dm6]	C	T	3.133e^-4	0.753	SYNONYMOUS_CODING Ank2 DOWNSTREAM Ank2 INTRON CG32373	TF binding site mE1_TFBS_chinmo
X	398580	X_398580_DEL [dm3] X_504547_DEL [dm6]	AC	A	3.148e^-4	0.753	DOWNSTREAM svr INTRON svr
2R	450254	2R_450254_SNP [dm3] 2R_4562749_SNP [dm6]	G	A	3.150e^-4	0.753	INTRON Stlk	transposable element FlyBase
2L	1303770	2L_1303770_SNP [dm3] 2L_1303770_SNP [dm6]	G	A	3.150e^-4	0.753	INTERGENIC
2L	14299333	2L_14299333_SNP [dm3] 2L_14299333_SNP [dm6]	G	A	3.160e^-4	0.753	INTRON wb
3R	15390247	3R_15390247_SNP [dm3] 3R_19564525_SNP [dm6]	C	G	3.160e^-4	0.753	INTRON Dys
2L	2058310	2L_2058310_SNP [dm3] 2L_2058310_SNP [dm6]	T	C	3.164e^-4	0.753	DOWNSTREAM dpr3 & 1 other INTERGENIC
3L	19523197	3L_19523197_SNP [dm3] 3L_19530097_SNP [dm6]	A	G	3.168e^-4	0.753	INTERGENIC
3R	6667368	3R_6667368_SNP [dm3] 3R_10841646_SNP [dm6]	T	G	3.170e^-4	0.753	INTRON Cad86C
2L	21993491	2L_21993491_SNP [dm3] 2L_21993491_SNP [dm6]	T	A	3.171e^-4	0.753	UPSTREAM CG2528 INTERGENIC
2L	13358773	2L_13358773_SNP [dm3] 2L_13358773_SNP [dm6]	T	A	3.174e^-4	0.753	INTERGENIC
3R	12094881	3R_12094881_SNP [dm3] 3R_16269159_SNP [dm6]	A	G	3.175e^-4	0.753	SYNONYMOUS_CODING Mat89Ba DOWNSTREAM Mst89B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	11274141	3R_11274141_SNP [dm3] 3R_15448419_SNP [dm6]	C	T	3.177e^-4	0.753	SYNONYMOUS_CODING AdamTS-A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3147081	3R_3147081_SNP [dm3] 3R_7321359_SNP [dm6]	G	T	3.177e^-4	0.753	INTERGENIC
3R	14595689	3R_14595689_SNP [dm3] 3R_18769967_SNP [dm6]	A	T	3.179e^-4	0.753	INTRON CG7720
3R	11419310	3R_11419310_SNP [dm3] 3R_15593588_SNP [dm6]	A	G	3.183e^-4	0.753	INTERGENIC
3R	15403970	3R_15403970_DEL [dm3] 3R_19578248_DEL [dm6]	TT	T	3.187e^-4	0.753	INTRON Dys
3R	16416524	3R_16416524_SNP [dm3] 3R_20590802_SNP [dm6]	G	T	3.190e^-4	0.753	DOWNSTREAM CG4159 INTRON Srp72	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2471111	3L_2471111_SNP [dm3] 3L_2471111_SNP [dm6]	T	G	3.193e^-4	0.753	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	18642763	X_18642763_SNP [dm3] X_18748730_SNP [dm6]	G	A	3.194e^-4	0.753	UPSTREAM CG12609 INTERGENIC
3L	19365394	3L_19365394_SNP [dm3] 3L_19372294_SNP [dm6]	T	C	3.197e^-4	0.753	SYNONYMOUS_CODING CG32206	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2L	470758	2L_470758_SNP [dm3] 2L_470758_SNP [dm6]	G	A	3.208e^-4	0.753	INTRON CG4297
3R	25644194	3R_25644194_SNP [dm3] 3R_29818472_SNP [dm6]	A	C	3.216e^-4	0.753	UPSTREAM CG7829 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19620705	3L_19620705_SNP [dm3] 3L_19627605_SNP [dm6]	G	A	3.221e^-4	0.753	SYNONYMOUS_CODING wnd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3537255	3L_3537255_INS [dm3] 3L_3537255_INS [dm6]	G	GT	3.225e^-4	0.753	INTRON Eip63E
2R	12481621	2R_12481621_SNP [dm3] 2R_16594116_SNP [dm6]	T	C	3.226e^-4	0.753	UTR_5_PRIME CG8306 DOWNSTREAM CG8303	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	1567921	2L_1567921_SNP [dm3] 2L_1567921_SNP [dm6]	A	T	3.227e^-4	0.753	INTRON haf
3R	4666618	3R_4666618_SNP [dm3] 3R_8840896_SNP [dm6]	G	A	3.241e^-4	0.753	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18218707	X_18218707_SNP [dm3] X_18324674_SNP [dm6]	C	T	3.256e^-4	0.753	UTR_3_PRIME CG6123
3L	8709329	3L_8709329_SNP [dm3] 3L_8716229_SNP [dm6]	A	G	3.257e^-4	0.753	INTERGENIC
X	5725046	X_5725046_SNP [dm3] X_5831013_SNP [dm6]	A	T	3.259e^-4	0.753	DOWNSTREAM CR43264 INTRON CG15765
X	5725128	X_5725128_SNP [dm3] X_5831095_SNP [dm6]	G	C	3.259e^-4	0.753	DOWNSTREAM CR43264 INTRON CG15765
3L	21196959	3L_21196959_SNP [dm3] 3L_21203859_SNP [dm6]	G	C	3.267e^-4	0.753	UPSTREAM CG33056 & 2 others INTRON CG10512
3L	7821382	3L_7821382_DEL [dm3] 3L_7828282_DEL [dm6]	TT	T	3.272e^-4	0.753	UPSTREAM Pdp1 INTRON Pdp1
X	14738622	X_14738622_SNP [dm3] X_14844589_SNP [dm6]	T	C	3.276e^-4	0.753	SYNONYMOUS_CODING CG12539 INTRON Flo2	TF binding site mE1_TFBS_chinmo
X	19274499	X_19274499_SNP [dm3] X_19380466_SNP [dm6]	T	C	3.282e^-4	0.753	INTRON kek5
2L	904817	2L_904817_SNP [dm3] 2L_904817_SNP [dm6]	C	A	3.289e^-4	0.753	DOWNSTREAM CR45261 INTERGENIC
X	17095457	X_17095457_SNP [dm3] X_17201424_SNP [dm6]	A	G	3.293e^-4	0.753	SPLICE_SITE_REGION CG8918 DOWNSTREAM baz INTRON CG8918
X	17095469	X_17095469_SNP [dm3] X_17201436_SNP [dm6]	C	G	3.293e^-4	0.753	DOWNSTREAM baz INTRON CG8918
3L	21763837	3L_21763837_SNP [dm3] 3L_21770737_SNP [dm6]	A	G	3.294e^-4	0.753	UTR_3_PRIME CG7370 UPSTREAM Syn1 INTRON CG42689
3L	21615932	3L_21615932_SNP [dm3] 3L_21622832_SNP [dm6]	A	T	3.296e^-4	0.753	INTRON CG7166
3L	9729316	3L_9729316_SNP [dm3] 3L_9736216_SNP [dm6]	A	T	3.303e^-4	0.753	INTRON CG42268
2L	4611526	2L_4611526_SNP [dm3] 2L_4611526_SNP [dm6]	T	C	3.312e^-4	0.753	INTRON dp	TF binding site mE1_TFBS_kn
3R	25996519	3R_25996519_SNP [dm3] 3R_30170797_SNP [dm6]	G	T	3.313e^-4	0.753	DOWNSTREAM Mlc2 INTRON CG31028	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	18213695	X_18213695_SNP [dm3] X_18319662_SNP [dm6]	C	T	3.316e^-4	0.753	INTRON CG6023
3R	21833604	3R_21833604_SNP [dm3] 3R_26007882_SNP [dm6]	T	C	3.317e^-4	0.753	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11705017	3L_11705017_SNP [dm3] 3L_11711917_SNP [dm6]	G	A	3.318e^-4	0.753	UPSTREAM crim DOWNSTREAM CG14132 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	23206998	3L_23206998_SNP [dm3] 3L_23213898_SNP [dm6]	A	C	3.320e^-4	0.753	INTRON nAChRalpha4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17530354	2R_17530354_SNP [dm3] 2R_21642849_SNP [dm6]	C	T	3.322e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10809045	2R_10809045_SNP [dm3] 2R_14921540_SNP [dm6]	A	T	3.329e^-4	0.753	INTRON CG10249
2R	15018178	2R_15018178_SNP [dm3] 2R_19130673_SNP [dm6]	A	G	3.336e^-4	0.753	SYNONYMOUS_CODING botv	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	16475634	3L_16475634_SNP [dm3] 3L_16482534_SNP [dm6]	T	A	3.337e^-4	0.753	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19510774	2R_19510774_DEL [dm3] 2R_23623251_DEL [dm6]	TGTCAAAGGTGTGAGATAAT...	T	3.341e^-4	0.753	INTERGENIC
2R	7371016	2R_7371016_SNP [dm3] 2R_11483511_SNP [dm6]	G	T	3.341e^-4	0.753	INTRON inv
X	9447398	X_9447398_SNP [dm3] X_9553365_SNP [dm6]	T	A	3.355e^-4	0.753	INTRON l_1_G0320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	12282462	2R_12282462_SNP [dm3] 2R_16394957_SNP [dm6]	T	C	3.356e^-4	0.753	INTRON Sema-2b
2R	6435226	2R_6435226_SNP [dm3] 2R_10547721_SNP [dm6]	G	A	3.362e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22026778	3R_22026778_SNP [dm3] 3R_26201056_SNP [dm6]	A	G	3.373e^-4	0.753	INTRON CR44320	TF binding site mE1_TFBS_HSA
X	18642663	X_18642663_SNP [dm3] X_18748630_SNP [dm6]	C	G	3.377e^-4	0.753	UPSTREAM CG12609 INTERGENIC
X	3169511	X_3169511_SNP [dm3] X_3275478_SNP [dm6]	T	A	3.382e^-4	0.753	INTRON dnc
X	18204259	X_18204259_DEL [dm3] X_18310226_DEL [dm6]	TATACCATTCAAATTCAT...	T	3.384e^-4	0.753	UPSTREAM os DOWNSTREAM CR45608 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	15377592	2R_15377592_SNP [dm3] 2R_19490087_SNP [dm6]	T	C	3.388e^-4	0.753	INTRON Oseg6
X	8470841	X_8470841_SNP [dm3] X_8576808_SNP [dm6]	T	A	3.391e^-4	0.753	INTRON CG12065
X	18207379	X_18207379_SNP [dm3] X_18313346_SNP [dm6]	T	C	3.393e^-4	0.753	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	22743006	3L_22743006_SNP [dm3] 3L_22749906_SNP [dm6]	T	C	3.396e^-4	0.753	NON_SYNONYMOUS_CODING SPoCk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3R	11286469	3R_11286469_SNP [dm3] 3R_15460747_SNP [dm6]	G	C	3.417e^-4	0.753	INTRON AdamTS-A
3R	21080812	3R_21080812_SNP [dm3] 3R_25255090_SNP [dm6]	C	A	3.430e^-4	0.753	SYNONYMOUS_CODING Nup358	TF binding site mE1_TFBS_chinmo
2L	8221642	2L_8221642_SNP [dm3] 2L_8221642_SNP [dm6]	C	T	3.434e^-4	0.753	SYNONYMOUS_CODING Pvr UPSTREAM Snx6
2R	15213498	2R_15213498_SNP [dm3] 2R_19325993_SNP [dm6]	C	G	3.439e^-4	0.753	SYNONYMOUS_CODING Rgk1 UPSTREAM Rgk1	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
2R	13669771	2R_13669771_SNP [dm3] 2R_17782266_SNP [dm6]	T	A	3.445e^-4	0.753	UPSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4120168	3L_4120168_SNP [dm3] 3L_4120168_SNP [dm6]	A	T	3.449e^-4	0.753	INTRON Chd64	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3L	10303588	3L_10303588_SNP [dm3] 3L_10310488_SNP [dm6]	T	C	3.453e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	15692801	3L_15692801_SNP [dm3] 3L_15699701_SNP [dm6]	T	C	3.454e^-4	0.753	START_GAINED comm2 UTR_5_PRIME comm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4794149	X_4794149_SNP [dm3] X_4900116_SNP [dm6]	C	A	3.461e^-4	0.753	INTRON CG42594
X	18207910	X_18207910_SNP [dm3] X_18313877_SNP [dm6]	C	T	3.462e^-4	0.753	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3R	25512290	3R_25512290_SNP [dm3] 3R_29686568_SNP [dm6]	C	T	3.467e^-4	0.753	DOWNSTREAM Gycalpha99B INTRON Obp99c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11049427	3L_11049427_SNP [dm3] 3L_11056327_SNP [dm6]	G	A	3.471e^-4	0.753	UPSTREAM CG7888 INTRON CG7888
3L	5314601	3L_5314601_SNP [dm3] 3L_5321501_SNP [dm6]	G	A	3.471e^-4	0.753	INTERGENIC
3L	8382529	3L_8382529_SNP [dm3] 3L_8389429_SNP [dm6]	T	C	3.472e^-4	0.753	SYNONYMOUS_CODING ImpE1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	10616678	2R_10616678_SNP [dm3] 2R_14729173_SNP [dm6]	A	T	3.473e^-4	0.753	INTERGENIC
X	18215809	X_18215809_INS [dm3] X_18321776_INS [dm6]	C	CAAAGTG	3.475e^-4	0.753	UPSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	1541609	X_1541609_SNP [dm3] X_1647576_SNP [dm6]	A	G	3.477e^-4	0.753	SYNONYMOUS_CODING br INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	3032281	X_3032281_SNP [dm3] X_3138248_SNP [dm6]	G	A	3.478e^-4	0.753	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12071702	3L_12071702_SNP [dm3] 3L_12078602_SNP [dm6]	A	T	3.479e^-4	0.753	INTRON Sema-5c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8691523	3R_8691523_INS [dm3] 3R_12865801_INS [dm6]	T	TT	3.483e^-4	0.753	INTERGENIC
2R	12282469	2R_12282469_SNP [dm3] 2R_16394964_SNP [dm6]	A	G	3.492e^-4	0.753	INTRON Sema-2b
X	18215510	X_18215510_SNP [dm3] X_18321477_SNP [dm6]	T	C	3.502e^-4	0.753	UPSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	14955222	3L_14955222_SNP [dm3] 3L_14962122_SNP [dm6]	C	T	3.503e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	4273603	X_4273603_SNP [dm3] X_4379570_SNP [dm6]	G	A	3.506e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_sens
2L	16479762	2L_16479762_DEL [dm3] 2L_16479762_DEL [dm6]	ATTT	A	3.507e^-4	0.753	INTRON dac
3R	22011214	3R_22011214_SNP [dm3] 3R_26185492_SNP [dm6]	G	C	3.509e^-4	0.753	UTR_5_PRIME CG31086 UTR_3_PRIME CG31323 UPSTREAM CG31086 DOWNSTREAM CG31323
3L	19467614	3L_19467614_SNP [dm3] 3L_19474514_SNP [dm6]	C	T	3.515e^-4	0.753	DOWNSTREAM CG18294 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	482088	2R_482088_SNP [dm3] 2R_4594583_SNP [dm6]	A	T	3.516e^-4	0.753	UPSTREAM p120ctn INTERGENIC
3L	9516392	3L_9516392_SNP [dm3] 3L_9523292_SNP [dm6]	A	G	3.525e^-4	0.753	INTRON CG33700
3L	12071701	3L_12071701_SNP [dm3] 3L_12078601_SNP [dm6]	C	A	3.528e^-4	0.753	INTRON Sema-5c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21843545	3R_21843545_INS [dm3] 3R_26017823_INS [dm6]	A	AG	3.537e^-4	0.753	UPSTREAM E_spl_m2-BFM DOWNSTREAM CR43643 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	23151106	3R_23151106_SNP [dm3] 3R_27325384_SNP [dm6]	C	G	3.541e^-4	0.753	INTERGENIC
2L	4399097	2L_4399097_SNP [dm3] 2L_4399097_SNP [dm6]	G	T	3.544e^-4	0.753	INTRON l_2_k05819
2L	4399116	2L_4399116_SNP [dm3] 2L_4399116_SNP [dm6]	G	A	3.544e^-4	0.753	INTRON l_2_k05819
3R	27513292	3R_27513292_SNP [dm3] 3R_31687570_SNP [dm6]	C	T	3.545e^-4	0.753	DOWNSTREAM CR45564 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	3074911	2R_3074911_SNP [dm3] 2R_7187406_SNP [dm6]	C	A	3.550e^-4	0.753	UTR_5_PRIME pk INTRON pk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
X	14755807	X_14755807_SNP [dm3] X_14861774_SNP [dm6]	C	T	3.553e^-4	0.753	INTRON Flo2
2L	11626266	2L_11626266_SNP [dm3] 2L_11626266_SNP [dm6]	A	G	3.553e^-4	0.753	UTR_3_PRIME kek2
2R	12356144	2R_12356144_SNP [dm3] 2R_16468639_SNP [dm6]	G	A	3.554e^-4	0.753	SYNONYMOUS_CODING CheB53b
2L	4042340	2L_4042340_SNP [dm3] 2L_4042340_SNP [dm6]	A	C	3.560e^-4	0.753	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8709319	3L_8709319_SNP [dm3] 3L_8716219_SNP [dm6]	C	T	3.564e^-4	0.753	INTERGENIC
2L	11142121	2L_11142121_SNP [dm3] 2L_11142121_SNP [dm6]	A	G	3.571e^-4	0.753	SYNONYMOUS_CODING Gyc32E
2L	11142124	2L_11142124_SNP [dm3] 2L_11142124_SNP [dm6]	G	A	3.571e^-4	0.753	SYNONYMOUS_CODING Gyc32E
2R	13669796	2R_13669796_SNP [dm3] 2R_17782291_SNP [dm6]	C	T	3.572e^-4	0.753	UPSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26425288	3R_26425288_SNP [dm3] 3R_30599566_SNP [dm6]	A	G	3.576e^-4	0.753	DOWNSTREAM CG31019 INTRON CG2246	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	10749757	2L_10749757_SNP [dm3] 2L_10749757_SNP [dm6]	A	T	3.580e^-4	0.753	INTRON CG17124
3L	14955294	3L_14955294_SNP [dm3] 3L_14962194_SNP [dm6]	A	C	3.586e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	2005600	3L_2005600_SNP [dm3] 3L_2005600_SNP [dm6]	A	C	3.592e^-4	0.753	UTR_5_PRIME CG42841
3R	23755529	3R_23755529_SNP [dm3] 3R_27929807_SNP [dm6]	A	C	3.592e^-4	0.753	UTR_5_PRIME mino INTRON mino	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7522956	2L_7522956_SNP [dm3] 2L_7522956_SNP [dm6]	C	T	3.600e^-4	0.753	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1711565	3L_1711565_SNP [dm3] 3L_1711565_SNP [dm6]	T	A	3.600e^-4	0.753	INTRON CG7991
3R	4707148	3R_4707148_SNP [dm3] 3R_8881426_SNP [dm6]	G	T	3.602e^-4	0.753	INTRON pyd
2L	2971915	2L_2971915_SNP [dm3] 2L_2971915_SNP [dm6]	G	A	3.607e^-4	0.753	NON_SYNONYMOUS_CODING Rrp1 UPSTREAM gammaTub23C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	15247161	3R_15247161_SNP [dm3] 3R_19421439_SNP [dm6]	A	G	3.609e^-4	0.753	INTRON CG31221
3L	2840797	3L_2840797_SNP [dm3] 3L_2840797_SNP [dm6]	G	C	3.613e^-4	0.753	INTRON CG43444
X	22004364	X_22004364_DEL [dm3] X_22602528_DEL [dm6]	TATTATTA	CGC	3.615e^-4	0.753	INTRON Cda4
3R	7159443	3R_7159443_INS [dm3] 3R_11333721_INS [dm6]	A	ATTAGGTAGGAT...	3.627e^-4	0.753	INTRON pros
2R	15090608	2R_15090608_SNP [dm3] 2R_19203103_SNP [dm6]	C	A	3.628e^-4	0.753	INTRON hppy
3L	12729217	3L_12729217_SNP [dm3] 3L_12736117_SNP [dm6]	G	T	3.628e^-4	0.753	NON_SYNONYMOUS_CODING Ptp69D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12574651	3R_12574651_SNP [dm3] 3R_16748929_SNP [dm6]	C	T	3.637e^-4	0.753	INTRON bxd	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	9660915	3L_9660915_SNP [dm3] 3L_9667815_SNP [dm6]	G	A	3.640e^-4	0.753	SYNONYMOUS_CODING fry
3L	11704633	3L_11704633_SNP [dm3] 3L_11711533_SNP [dm6]	A	G	3.640e^-4	0.753	UPSTREAM crim DOWNSTREAM Ccdc56 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	2350909	3R_2350909_SNP [dm3] 3R_6525187_SNP [dm6]	A	T	3.650e^-4	0.753	INTERGENIC
3L	9080129	3L_9080129_SNP [dm3] 3L_9087029_SNP [dm6]	G	A	3.672e^-4	0.753	SYNONYMOUS_CODING Tequila INTRON Tequila
2R	16777865	2R_16777865_SNP [dm3] 2R_20890360_SNP [dm6]	T	G	3.674e^-4	0.753	INTRON otp	TF binding site mE1_TFBS_chinmo
2L	7783477	2L_7783477_SNP [dm3] 2L_7783477_SNP [dm6]	T	C	3.681e^-4	0.753	SYNONYMOUS_CODING CG7154 DOWNSTREAM CG7164	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	9250844	2L_9250844_SNP [dm3] 2L_9250844_SNP [dm6]	G	A	3.682e^-4	0.753	SYNONYMOUS_CODING aust DOWNSTREAM CR43734 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9195213	3R_9195213_SNP [dm3] 3R_13369491_SNP [dm6]	G	A	3.684e^-4	0.753	UPSTREAM CheA87a DOWNSTREAM Dic1 & 1 other INTERGENIC
X	14966134	X_14966134_INS [dm3] X_15072101_INS [dm6]	C	CTAC	3.687e^-4	0.753	UTR_3_PRIME Lsd-2
2L	3155387	2L_3155387_SNP [dm3] 2L_3155387_SNP [dm6]	G	T	3.694e^-4	0.753	INTRON Mad	TF binding site mE1_TFBS_cad
3L	11524160	3L_11524160_SNP [dm3] 3L_11531060_SNP [dm6]	T	C	3.694e^-4	0.753	INTRON Mob2
3L	8994995	3L_8994995_SNP [dm3] 3L_9001895_SNP [dm6]	G	A	3.697e^-4	0.753	SYNONYMOUS_CODING CG5087	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	8693571	X_8693571_SNP [dm3] X_8799538_SNP [dm6]	A	G	3.704e^-4	0.753	INTRON Lim1	TF binding site BDTNP1_TFBS_prd
3L	5215842	3L_5215842_SNP [dm3] 3L_5222742_SNP [dm6]	T	C	3.709e^-4	0.753	INTRON shep
2R	5635084	2R_5635084_SNP [dm3] 2R_9747579_SNP [dm6]	C	A	3.712e^-4	0.753	START_GAINED sqa UTR_5_PRIME sqa
3L	8985160	3L_8985160_SNP [dm3] 3L_8992060_SNP [dm6]	C	T	3.714e^-4	0.753	UTR_3_PRIME smg INTRON smg
3L	8517300	3L_8517300_SNP [dm3] 3L_8524200_SNP [dm6]	G	A	3.717e^-4	0.753	SYNONYMOUS_CODING GstO1 UPSTREAM GstO2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_ttk
3L	12985506	3L_12985506_SNP [dm3] 3L_12992406_SNP [dm6]	T	G	3.723e^-4	0.753	INTERGENIC
3L	11192576	3L_11192576_SNP [dm3] 3L_11199476_SNP [dm6]	G	A	3.724e^-4	0.753	UPSTREAM CG7607 INTRON Plod
3L	15669715	3L_15669715_SNP [dm3] 3L_15676615_SNP [dm6]	C	G	3.730e^-4	0.753	INTERGENIC
3R	21769750	3R_21769750_SNP [dm3] 3R_25944028_SNP [dm6]	A	T	3.730e^-4	0.753	INTRON CCAP-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25755173	3R_25755173_SNP [dm3] 3R_29929451_SNP [dm6]	T	A	3.730e^-4	0.753	NON_SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522
3R	14612327	3R_14612327_DEL [dm3] 3R_18786605_DEL [dm6]	AGCTTCA	A	3.735e^-4	0.753	INTRON CG7720
2L	15147751	2L_15147751_SNP [dm3] 2L_15147751_SNP [dm6]	A	G	3.736e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8203585	3L_8203585_SNP [dm3] 3L_8210485_SNP [dm6]	G	T	3.736e^-4	0.753	NON_SYNONYMOUS_CODING CG32364
3L	1551324	3L_1551324_SNP [dm3] 3L_1551324_SNP [dm6]	A	C	3.754e^-4	0.753	INTRON Cct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6667395	3R_6667395_SNP [dm3] 3R_10841673_SNP [dm6]	A	C	3.756e^-4	0.753	INTRON Cad86C
3R	6667405	3R_6667405_SNP [dm3] 3R_10841683_SNP [dm6]	T	A	3.756e^-4	0.753	INTRON Cad86C
3R	10078726	3R_10078726_SNP [dm3] 3R_14253004_SNP [dm6]	T	C	3.761e^-4	0.753	INTRON Aats-met
3L	8466923	3L_8466923_SNP [dm3] 3L_8473823_SNP [dm6]	A	G	3.769e^-4	0.753	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18204213	X_18204213_SNP [dm3] X_18310180_SNP [dm6]	A	G	3.774e^-4	0.753	UPSTREAM os DOWNSTREAM CR45608 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	7690448	2L_7690448_SNP [dm3] 2L_7690448_SNP [dm6]	A	G	3.785e^-4	0.753	SYNONYMOUS_CODING CG18585 DOWNSTREAM Myo28B1 & 1 other
2R	12282457	2R_12282457_SNP [dm3] 2R_16394952_SNP [dm6]	T	C	3.792e^-4	0.753	INTRON Sema-2b
2R	19022105	2R_19022105_SNP [dm3] 2R_23134582_SNP [dm6]	T	A	3.792e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	2498503	3R_2498503_SNP [dm3] 3R_6672781_SNP [dm6]	T	G	3.798e^-4	0.753	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	10973575	3L_10973575_SNP [dm3] 3L_10980475_SNP [dm6]	T	G	3.800e^-4	0.753	DOWNSTREAM klu INTERGENIC
3L	15702174	3L_15702174_SNP [dm3] 3L_15709074_SNP [dm6]	G	T	3.804e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	12065235	3L_12065235_SNP [dm3] 3L_12072135_SNP [dm6]	G	C	3.813e^-4	0.753	INTRON Sema-5c
2L	8718071	2L_8718071_SNP [dm3] 2L_8718071_SNP [dm6]	C	G	3.814e^-4	0.753	INTRON raw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9901451	2R_9901451_SNP [dm3] 2R_14013946_SNP [dm6]	C	G	3.817e^-4	0.753	INTRON mam	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8718848	3R_8718848_INS [dm3] 3R_12893126_INS [dm6]	T	TC	3.819e^-4	0.753	UTR_3_PRIME d-cup UPSTREAM CR44235 DOWNSTREAM CR33929
3R	16424695	3R_16424695_SNP [dm3] 3R_20598973_SNP [dm6]	A	G	3.821e^-4	0.753	INTRON bon	TF binding site BDTNP1_TFBS_dl
2R	12125779	2R_12125779_MNP [dm3] 2R_16238274_MNP [dm6]	GTT	AGC	3.830e^-4	0.753	UTR_3_PRIME krimp DOWNSTREAM CG3687
X	2845876	X_2845876_SNP [dm3] X_2951843_SNP [dm6]	C	T	3.831e^-4	0.753	UTR_3_PRIME rst INTRON kirre
3L	4110229	3L_4110229_SNP [dm3] 3L_4110229_SNP [dm6]	A	G	3.843e^-4	0.753	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13100177	2R_13100177_SNP [dm3] 2R_17212672_SNP [dm6]	G	C	3.847e^-4	0.753	INTERGENIC
2L	21993493	2L_21993493_SNP [dm3] 2L_21993493_SNP [dm6]	T	A	3.850e^-4	0.753	UPSTREAM CG2528 INTERGENIC
3L	12231331	3L_12231331_SNP [dm3] 3L_12238231_SNP [dm6]	C	A	3.855e^-4	0.753	INTRON app
3R	8718951	3R_8718951_SNP [dm3] 3R_12893229_SNP [dm6]	A	T	3.856e^-4	0.753	UPSTREAM CR44235 DOWNSTREAM CR33929 & 1 other INTERGENIC
3L	12822431	3L_12822431_SNP [dm3] 3L_12829331_SNP [dm6]	G	A	3.856e^-4	0.753	INTRON CG10960
X	18204207	X_18204207_SNP [dm3] X_18310174_SNP [dm6]	A	G	3.860e^-4	0.753	UPSTREAM os DOWNSTREAM CR45608 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	6101702	X_6101702_SNP [dm3] X_6207669_SNP [dm6]	A	C	3.869e^-4	0.753	INTERGENIC
3R	19074717	3R_19074717_SNP [dm3] 3R_23248995_SNP [dm6]	A	T	3.874e^-4	0.753	UPSTREAM CG4467 DOWNSTREAM CG4449 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10973142	3L_10973142_SNP [dm3] 3L_10980042_SNP [dm6]	G	A	3.881e^-4	0.753	INTERGENIC
3L	2471118	3L_2471118_INS [dm3] 3L_2471118_INS [dm6]	T	TT	3.884e^-4	0.753	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	26211008	3R_26211008_SNP [dm3] 3R_30385286_SNP [dm6]	T	A	3.885e^-4	0.753	DOWNSTREAM Fer1HCH INTERGENIC
3L	13838431	3L_13838431_SNP [dm3] 3L_13845331_SNP [dm6]	C	A	3.886e^-4	0.753	UPSTREAM Hml DOWNSTREAM Tsp68C INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_run
2R	14373748	2R_14373748_SNP [dm3] 2R_18486243_SNP [dm6]	C	G	3.889e^-4	0.753	INTRON CG30116
2R	13669738	2R_13669738_INS [dm3] 2R_17782233_INS [dm6]	A	AG	3.897e^-4	0.753	UPSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	21537009	3L_21537009_SNP [dm3] 3L_21543909_SNP [dm6]	C	A	3.898e^-4	0.753	UTR_3_PRIME Wnk DOWNSTREAM Wnk & 1 other
X	14991031	X_14991031_SNP [dm3] X_15096998_SNP [dm6]	C	A	3.899e^-4	0.753	UPSTREAM CG9072 INTRON Rab3-GEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9670733	2L_9670733_SNP [dm3] 2L_9670733_SNP [dm6]	A	G	3.908e^-4	0.753	INTRON CR44150
2L	4708699	2L_4708699_SNP [dm3] 2L_4708699_SNP [dm6]	C	T	3.909e^-4	0.753	INTRON CG34351
3L	6890730	3L_6890730_SNP [dm3] 3L_6897630_SNP [dm6]	T	G	3.910e^-4	0.753	INTERGENIC
3R	8829776	3R_8829776_SNP [dm3] 3R_13004054_SNP [dm6]	C	T	3.911e^-4	0.753	SYNONYMOUS_CODING CG7518	TF binding site mE1_TFBS_chinmo
3R	22711039	3R_22711039_SNP [dm3] 3R_26885317_SNP [dm6]	G	C	3.914e^-4	0.753	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8520587	3L_8520587_SNP [dm3] 3L_8527487_SNP [dm6]	G	C	3.918e^-4	0.753	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7843569	3L_7843569_DEL [dm3] 3L_7850469_DEL [dm6]	CATATCTAATAACTTCAAAT...	C	3.920e^-4	0.753	INTRON Pdp1	regulatory region REDfly_CRMs
3R	11688343	3R_11688343_SNP [dm3] 3R_15862621_SNP [dm6]	G	C	3.922e^-4	0.753	SYNONYMOUS_CODING CG31183	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24693691	3R_24693691_SNP [dm3] 3R_28867969_SNP [dm6]	G	A	3.928e^-4	0.753	NON_SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6473566	3L_6473566_SNP [dm3] 3L_6480466_SNP [dm6]	C	G	3.938e^-4	0.753	INTRON CG42747
3L	11244264	3L_11244264_SNP [dm3] 3L_11251164_SNP [dm6]	C	A	3.938e^-4	0.753	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	19262592	3R_19262592_SNP [dm3] 3R_23436870_SNP [dm6]	G	C	3.950e^-4	0.753	INTRON CG4374
X	368434	X_368434_SNP [dm3] X_474401_SNP [dm6]	G	T	3.955e^-4	0.753	NON_SYNONYMOUS_CODING ebo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8765664	3R_8765664_SNP [dm3] 3R_12939942_SNP [dm6]	T	C	3.957e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18378025	3L_18378025_SNP [dm3] 3L_18384925_SNP [dm6]	C	G	3.959e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_inv
X	10204066	X_10204066_SNP [dm3] X_10310033_SNP [dm6]	G	T	3.963e^-4	0.753	UPSTREAM alpha-Man-I INTRON alpha-Man-I
3L	14369543	3L_14369543_SNP [dm3] 3L_14376443_SNP [dm6]	T	C	3.969e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_cad
3R	18789273	3R_18789273_SNP [dm3] 3R_22963551_SNP [dm6]	G	A	3.982e^-4	0.753	DOWNSTREAM CR43655 INTERGENIC	TF binding site mE1_TFBS_sbb
X	16435814	X_16435814_DEL [dm3] X_16541781_DEL [dm6]	TT	T	3.985e^-4	0.753	UPSTREAM CG9903 DOWNSTREAM CG9902 INTERGENIC	transposable element FlyBase
3R	9195156	3R_9195156_SNP [dm3] 3R_13369434_SNP [dm6]	A	G	3.986e^-4	0.753	UPSTREAM CheA87a DOWNSTREAM Dic1 & 1 other INTERGENIC
3L	9543873	3L_9543873_SNP [dm3] 3L_9550773_SNP [dm6]	A	C	3.988e^-4	0.753	INTRON CG42673
3L	18580670	3L_18580670_SNP [dm3] 3L_18587570_SNP [dm6]	T	A	3.991e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10777221	3L_10777221_SNP [dm3] 3L_10784121_SNP [dm6]	A	C	3.994e^-4	0.753	UPSTREAM CR44544 INTERGENIC	TF binding site mE1_TFBS_inv
2R	9463297	2R_9463297_SNP [dm3] 2R_13575792_SNP [dm6]	A	C	3.998e^-4	0.753	EXON CR44365	TF binding site BDTNP1_TFBS_dl
3L	16268987	3L_16268987_SNP [dm3] 3L_16275887_SNP [dm6]	A	C	4.011e^-4	0.753	INTERGENIC
3L	6176921	3L_6176921_SNP [dm3] 3L_6183821_SNP [dm6]	C	T	4.017e^-4	0.753	SYNONYMOUS_CODING D19B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2R	17246183	2R_17246183_SNP [dm3] 2R_21358678_SNP [dm6]	C	T	4.018e^-4	0.753	INTRON cv-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7902026	2L_7902026_DEL [dm3] 2L_7902026_DEL [dm6]	TT	T	4.023e^-4	0.753	INTRON Snoo
3R	13928374	3R_13928374_SNP [dm3] 3R_18102652_SNP [dm6]	G	A	4.025e^-4	0.753	INTRON sr
3L	14955122	3L_14955122_SNP [dm3] 3L_14962022_SNP [dm6]	A	T	4.025e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5725761	3R_5725761_SNP [dm3] 3R_9900039_SNP [dm6]	T	G	4.026e^-4	0.753	INTRON Glut4EF
3L	11699525	3L_11699525_SNP [dm3] 3L_11706425_SNP [dm6]	C	G	4.028e^-4	0.753	INTRON CG11658
3R	25945634	3R_25945634_SNP [dm3] 3R_30119912_SNP [dm6]	A	C	4.035e^-4	0.753	INTRON sima
2L	508615	2L_508615_SNP [dm3] 2L_508615_SNP [dm6]	G	A	4.036e^-4	0.753	INTRON ush
3R	20378129	3R_20378129_SNP [dm3] 3R_24552407_SNP [dm6]	C	T	4.040e^-4	0.753	SYNONYMOUS_CODING Esyt2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19981177	3R_19981177_SNP [dm3] 3R_24155455_SNP [dm6]	G	A	4.041e^-4	0.753	UTR_3_PRIME Myo95E DOWNSTREAM Myo95E & 1 other
2R	15581519	2R_15581519_SNP [dm3] 2R_19694014_SNP [dm6]	G	A	4.041e^-4	0.753	EXON CR44506
3R	26242356	3R_26242356_SNP [dm3] 3R_30416634_SNP [dm6]	G	T	4.046e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	17673266	3L_17673266_SNP [dm3] 3L_17680166_SNP [dm6]	T	A	4.047e^-4	0.753	INTRON CG34251
X	18207446	X_18207446_SNP [dm3] X_18313413_SNP [dm6]	A	T	4.048e^-4	0.753	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25754162	3R_25754162_SNP [dm3] 3R_29928440_SNP [dm6]	T	C	4.051e^-4	0.753	SYNONYMOUS_CODING CG15522 DOWNSTREAM CG31202	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8824205	3R_8824205_SNP [dm3] 3R_12998483_SNP [dm6]	G	T	4.052e^-4	0.753	START_GAINED CG7518 UTR_5_PRIME CG7518 UPSTREAM CG17327 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12125764	2R_12125764_SNP [dm3] 2R_16238259_SNP [dm6]	A	T	4.055e^-4	0.753	UTR_3_PRIME krimp DOWNSTREAM CG3687
3L	23766097	3L_23766097_DEL [dm3] 3L_23772997_DEL [dm6]	GAGTGCTTTTGTCGGATATT...	C	4.070e^-4	0.753	INTERGENIC
3R	12096173	3R_12096173_SNP [dm3] 3R_16270451_SNP [dm6]	T	A	4.073e^-4	0.753	SYNONYMOUS_CODING Mat89Ba
2R	19022162	2R_19022162_SNP [dm3] 2R_23134639_SNP [dm6]	G	A	4.080e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	11705001	3L_11705001_SNP [dm3] 3L_11711901_SNP [dm6]	C	T	4.096e^-4	0.753	UPSTREAM crim DOWNSTREAM CG14132 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	13346202	3R_13346202_SNP [dm3] 3R_17520480_SNP [dm6]	C	T	4.099e^-4	0.753	INTERGENIC
3L	1186283	3L_1186283_SNP [dm3] 3L_1186283_SNP [dm6]	C	G	4.103e^-4	0.753	INTERGENIC
3R	26089271	3R_26089271_SNP [dm3] 3R_30263549_SNP [dm6]	G	A	4.106e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_dl

By genomic position
Variant impact
Gene name

W2 Vial 3 ascension (cm) phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results