DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.952e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2627 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	12001375	3L_12001375_SNP [dm3] 3L_12008275_SNP [dm6]	G	T	2.486e^-7	0.423	UTR_3_PRIME rols DOWNSTREAM CG6928
X	15294540	X_15294540_SNP [dm3] X_15400507_SNP [dm6]	A	T	4.511e^-7	0.423	INTRON Cngl
3L	6179603	3L_6179603_SNP [dm3] 3L_6186503_SNP [dm6]	G	A	1.996e^-6	0.506	SYNONYMOUS_CODING D19A DOWNSTREAM CG43293	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10012571	3R_10012571_SNP [dm3] 3R_14186849_SNP [dm6]	G	C	2.362e^-6	0.506	INTRON Dop1R1
3L	5613631	3L_5613631_SNP [dm3] 3L_5620531_SNP [dm6]	C	T	3.170e^-6	0.506	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12284091	2R_12284091_SNP [dm3] 2R_16396586_SNP [dm6]	T	A	3.366e^-6	0.506	INTRON Sema-2b
3R	18115133	3R_18115133_SNP [dm3] 3R_22289411_SNP [dm6]	T	G	3.431e^-6	0.506	INTRON SKIP
2L	2483881	2L_2483881_DEL [dm3] 2L_2483881_DEL [dm6]	ACACACA	A	3.725e^-6	0.506	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	15696880	3L_15696880_SNP [dm3] 3L_15703780_SNP [dm6]	A	T	4.026e^-6	0.506	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	2337311	3L_2337311_SNP [dm3] 3L_2337311_SNP [dm6]	C	G	4.149e^-6	0.506	INTRON MsR1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	18115174	3R_18115174_SNP [dm3] 3R_22289452_SNP [dm6]	C	G	4.177e^-6	0.506	INTRON SKIP
2L	13358773	2L_13358773_SNP [dm3] 2L_13358773_SNP [dm6]	T	A	4.235e^-6	0.506	INTERGENIC
3L	18064885	3L_18064885_SNP [dm3] 3L_18071785_SNP [dm6]	C	T	4.767e^-6	0.506	SYNONYMOUS_CODING CG44005 DOWNSTREAM CG44004
3R	25533467	3R_25533467_SNP [dm3] 3R_29707745_SNP [dm6]	C	T	5.095e^-6	0.506	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1611540	2L_1611540_SNP [dm3] 2L_1611540_SNP [dm6]	G	A	5.252e^-6	0.506	SYNONYMOUS_CODING CG14352 UPSTREAM CG31935 DOWNSTREAM RFeSP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
X	3108671	X_3108671_SNP [dm3] X_3214638_SNP [dm6]	T	C	5.714e^-6	0.506	INTRON dnc
2R	12284739	2R_12284739_SNP [dm3] 2R_16397234_SNP [dm6]	C	T	6.352e^-6	0.506	INTRON Sema-2b
3L	2337300	3L_2337300_SNP [dm3] 3L_2337300_SNP [dm6]	C	A	6.443e^-6	0.506	INTRON MsR1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	9757597	3L_9757597_SNP [dm3] 3L_9764497_SNP [dm6]	T	A	6.545e^-6	0.506	INTRON CG8177
X	8427956	X_8427956_SNP [dm3] X_8533923_SNP [dm6]	G	C	6.756e^-6	0.506	INTRON Nrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2618235	2L_2618235_SNP [dm3] 2L_2618235_SNP [dm6]	T	A	6.977e^-6	0.506	INTERGENIC
2L	4036845	2L_4036845_SNP [dm3] 2L_4036845_SNP [dm6]	T	G	7.074e^-6	0.506	INTRON ed
2R	19022162	2R_19022162_SNP [dm3] 2R_23134639_SNP [dm6]	G	A	7.093e^-6	0.506	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	6635286	3L_6635286_SNP [dm3] 3L_6642186_SNP [dm6]	C	A	7.166e^-6	0.506	UPSTREAM CR45239 DOWNSTREAM CR45238 INTERGENIC
3L	7844526	3L_7844526_SNP [dm3] 3L_7851426_SNP [dm6]	G	A	7.253e^-6	0.506	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	15294627	X_15294627_SNP [dm3] X_15400594_SNP [dm6]	T	C	7.427e^-6	0.506	INTRON Cngl
3L	2337302	3L_2337302_SNP [dm3] 3L_2337302_SNP [dm6]	A	G	7.468e^-6	0.506	INTRON MsR1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	6685499	3R_6685499_SNP [dm3] 3R_10859777_SNP [dm6]	G	A	7.773e^-6	0.506	SYNONYMOUS_CODING CG14694 DOWNSTREAM CG6574	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7017394	2L_7017394_SNP [dm3] 2L_7017394_SNP [dm6]	G	A	8.102e^-6	0.506	SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1611962	2L_1611962_DEL [dm3] 2L_1611962_DEL [dm6]	ATTTCAGTGCTTTATCT...	A	8.332e^-6	0.506	UPSTREAM CG31935 DOWNSTREAM RFeSP INTRON CG14352	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	18114955	3R_18114955_DEL [dm3] 3R_22289233_DEL [dm6]	TTTCCTTTG	AC	8.816e^-6	0.506	INTRON SKIP
3R	27300122	3R_27300122_SNP [dm3] 3R_31474400_SNP [dm6]	A	T	9.053e^-6	0.506	DOWNSTREAM CR45555 INTERGENIC
2L	1584813	2L_1584813_DEL [dm3] 2L_1584813_DEL [dm6]	CATAC	C	9.631e^-6	0.506	DOWNSTREAM CG10869 INTRON haf
2L	1585350	2L_1585350_SNP [dm3] 2L_1585350_SNP [dm6]	A	G	1.031e^-5	0.506	SYNONYMOUS_CODING CG10869 INTRON haf	TF binding site mE1_TFBS_sens
3R	17168380	3R_17168380_SNP [dm3] 3R_21342658_SNP [dm6]	C	G	1.045e^-5	0.506	NON_SYNONYMOUS_CODING CG16791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	1575742	2L_1575742_SNP [dm3] 2L_1575742_SNP [dm6]	T	C	1.118e^-5	0.506	INTRON haf
2R	12285444	2R_12285444_SNP [dm3] 2R_16397939_SNP [dm6]	G	A	1.144e^-5	0.506	UPSTREAM Sema-2b INTRON Sema-2b
2L	7017404	2L_7017404_SNP [dm3] 2L_7017404_SNP [dm6]	C	G	1.228e^-5	0.506	NON_SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10625783	2R_10625783_SNP [dm3] 2R_14738278_SNP [dm6]	T	A	1.241e^-5	0.506	EXON CR43428
2L	1178728	2L_1178728_SNP [dm3] 2L_1178728_SNP [dm6]	G	T	1.243e^-5	0.506	INTRON CG4896	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13056978	2L_13056978_SNP [dm3] 2L_13056978_SNP [dm6]	A	C	1.275e^-5	0.506	INTRON CG9932
2R	9741877	2R_9741877_SNP [dm3] 2R_13854372_SNP [dm6]	A	T	1.290e^-5	0.506	UPSTREAM CR44367 & 1 other DOWNSTREAM CG6553 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	11190416	3R_11190416_SNP [dm3] 3R_15364694_SNP [dm6]	G	T	1.311e^-5	0.506	SYNONYMOUS_CODING CG34404 UPSTREAM CG6171	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9309216	2R_9309216_SNP [dm3] 2R_13421711_SNP [dm6]	C	T	1.331e^-5	0.506	SPLICE_SITE_REGION CG42321 INTRON CG42321
2R	11663155	2R_11663155_SNP [dm3] 2R_15775650_SNP [dm6]	G	A	1.339e^-5	0.506	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
3L	10818741	3L_10818741_SNP [dm3] 3L_10825641_SNP [dm6]	A	T	1.346e^-5	0.506	DOWNSTREAM CR45246 INTERGENIC
2L	1584841	2L_1584841_SNP [dm3] 2L_1584841_SNP [dm6]	T	C	1.347e^-5	0.506	DOWNSTREAM CG10869 INTRON haf
3R	24675106	3R_24675106_SNP [dm3] 3R_28849384_SNP [dm6]	T	C	1.366e^-5	0.506	INTRON spg
2R	9746892	2R_9746892_SNP [dm3] 2R_13859387_SNP [dm6]	C	T	1.388e^-5	0.506	SYNONYMOUS_CODING Uba3 UPSTREAM tum DOWNSTREAM CG16935	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16060376	2R_16060376_SNP [dm3] 2R_20172871_SNP [dm6]	G	C	1.420e^-5	0.506	INTERGENIC
3R	17169062	3R_17169062_SNP [dm3] 3R_21343340_SNP [dm6]	C	T	1.471e^-5	0.506	INTRON CG16791	TF binding site BDTNP1_TFBS_da
3L	10456423	3L_10456423_SNP [dm3] 3L_10463323_SNP [dm6]	A	G	1.472e^-5	0.506	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	17437346	2R_17437346_SNP [dm3] 2R_21549841_SNP [dm6]	T	G	1.493e^-5	0.506	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4481973	3L_4481973_SNP [dm3] 3L_4481973_SNP [dm6]	G	T	1.506e^-5	0.506	UPSTREAM CG11350 DOWNSTREAM CG7465 INTERGENIC
3L	13238006	3L_13238006_SNP [dm3] 3L_13244906_SNP [dm6]	C	A	1.516e^-5	0.506	INTRON caps	TF binding site BDTNP1_TFBS_dl
2L	7017383	2L_7017383_SNP [dm3] 2L_7017383_SNP [dm6]	G	A	1.520e^-5	0.506	SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14520875	3R_14520875_SNP [dm3] 3R_18695153_SNP [dm6]	A	T	1.540e^-5	0.506	UPSTREAM CG34282 INTERGENIC
2R	12336043	2R_12336043_SNP [dm3] 2R_16448538_SNP [dm6]	C	A	1.566e^-5	0.506	INTERGENIC
3R	9290391	3R_9290391_SNP [dm3] 3R_13464669_SNP [dm6]	T	C	1.629e^-5	0.518	UPSTREAM mir-252 DOWNSTREAM CG14372 INTRON CR17025
2R	12284362	2R_12284362_SNP [dm3] 2R_16396857_SNP [dm6]	C	G	1.656e^-5	0.518	INTRON Sema-2b
3R	25046313	3R_25046313_SNP [dm3] 3R_29220591_SNP [dm6]	T	C	1.702e^-5	0.523	DOWNSTREAM CR31044 INTRON Ef1gamma	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6635295	3L_6635295_SNP [dm3] 3L_6642195_SNP [dm6]	G	A	1.755e^-5	0.529	UPSTREAM CR45239 DOWNSTREAM CR45238 INTERGENIC
X	15294622	X_15294622_SNP [dm3] X_15400589_SNP [dm6]	C	A	1.824e^-5	0.529	INTRON Cngl
X	15294628	X_15294628_SNP [dm3] X_15400595_SNP [dm6]	A	G	1.824e^-5	0.529	INTRON Cngl
3L	16980771	3L_16980771_SNP [dm3] 3L_16987671_SNP [dm6]	T	C	1.854e^-5	0.529	INTRON Exn
2L	21335199	2L_21335199_SNP [dm3] 2L_21335199_SNP [dm6]	T	C	1.904e^-5	0.529	INTRON dimm
2R	19256790	2R_19256790_SNP [dm3] 2R_23369267_SNP [dm6]	G	A	1.915e^-5	0.529	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
2L	1614213	2L_1614213_SNP [dm3] 2L_1614213_SNP [dm6]	A	G	1.920e^-5	0.529	UPSTREAM RFeSP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3R	25046928	3R_25046928_SNP [dm3] 3R_29221206_SNP [dm6]	C	T	1.946e^-5	0.529	SYNONYMOUS_CODING Ef1gamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6179646	3L_6179646_SNP [dm3] 3L_6186546_SNP [dm6]	C	T	2.018e^-5	0.534	SYNONYMOUS_CODING D19A DOWNSTREAM CG43293	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17531226	3R_17531226_SNP [dm3] 3R_21705504_SNP [dm6]	T	C	2.023e^-5	0.534	INTRON CG31176
3L	5314708	3L_5314708_SNP [dm3] 3L_5321608_SNP [dm6]	A	G	2.067e^-5	0.538	INTERGENIC
2R	11663517	2R_11663517_SNP [dm3] 2R_15776012_SNP [dm6]	A	G	2.215e^-5	0.564	UTR_5_PRIME Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_chinmo
2L	1578696	2L_1578696_SNP [dm3] 2L_1578696_SNP [dm6]	A	T	2.317e^-5	0.564	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21097396	3R_21097396_SNP [dm3] 3R_25271674_SNP [dm6]	T	A	2.320e^-5	0.564	UTR_5_PRIME CG11891 UTR_3_PRIME CG11889 UPSTREAM CG11891 DOWNSTREAM CG11889
2R	12806979	2R_12806979_SNP [dm3] 2R_16919474_SNP [dm6]	G	A	2.346e^-5	0.564	INTERGENIC
3R	9299142	3R_9299142_SNP [dm3] 3R_13473420_SNP [dm6]	C	A	2.355e^-5	0.564	INTERGENIC
2L	1596552	2L_1596552_SNP [dm3] 2L_1596552_SNP [dm6]	C	T	2.360e^-5	0.564	INTRON haf & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16905264	2R_16905264_SNP [dm3] 2R_21017759_SNP [dm6]	T	C	2.393e^-5	0.564	UPSTREAM RIC-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	11056689	2L_11056689_SNP [dm3] 2L_11056689_SNP [dm6]	T	A	2.438e^-5	0.564	UPSTREAM Samuel INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11056690	2L_11056690_SNP [dm3] 2L_11056690_SNP [dm6]	T	A	2.438e^-5	0.564	UPSTREAM Samuel INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14367123	3L_14367123_SNP [dm3] 3L_14374023_SNP [dm6]	C	A	2.510e^-5	0.572	INTERGENIC
3L	14366400	3L_14366400_SNP [dm3] 3L_14373300_SNP [dm6]	C	A	2.544e^-5	0.572	INTERGENIC
2L	1578608	2L_1578608_SNP [dm3] 2L_1578608_SNP [dm6]	C	T	2.579e^-5	0.572	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12283455	2R_12283455_SNP [dm3] 2R_16395950_SNP [dm6]	C	T	2.684e^-5	0.572	INTRON Sema-2b	TF binding site mE1_TFBS_inv
3R	19766036	3R_19766036_SNP [dm3] 3R_23940314_SNP [dm6]	T	A	2.718e^-5	0.572	INTRON Gdh
3L	8324195	3L_8324195_SNP [dm3] 3L_8331095_SNP [dm6]	T	A	2.730e^-5	0.572	DOWNSTREAM CG34462 INTERGENIC
2L	1576572	2L_1576572_SNP [dm3] 2L_1576572_SNP [dm6]	T	C	2.739e^-5	0.572	INTRON haf
2L	10053506	2L_10053506_SNP [dm3] 2L_10053506_SNP [dm6]	C	A	2.772e^-5	0.572	UPSTREAM CR44875 & 1 other INTERGENIC
3R	22552472	3R_22552472_INS [dm3] 3R_26726750_INS [dm6]	A	AAAGT	2.809e^-5	0.572	UPSTREAM CG14246 DOWNSTREAM CG14244 INTERGENIC
3R	27213948	3R_27213948_SNP [dm3] 3R_31388226_SNP [dm6]	G	A	2.810e^-5	0.572	INTRON CG1607	TF binding site mE1_TFBS_cad
2R	9450556	2R_9450556_SNP [dm3] 2R_13563051_SNP [dm6]	C	T	2.831e^-5	0.572	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	19083521	3R_19083521_SNP [dm3] 3R_23257799_SNP [dm6]	G	T	2.838e^-5	0.572	UPSTREAM CG13827 INTRON wda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5386302	2R_5386302_SNP [dm3] 2R_9498797_SNP [dm6]	A	C	2.876e^-5	0.574	INTRON Wnt2
2L	1575824	2L_1575824_SNP [dm3] 2L_1575824_SNP [dm6]	G	C	2.919e^-5	0.576	INTRON haf
2L	1576021	2L_1576021_SNP [dm3] 2L_1576021_SNP [dm6]	C	T	2.951e^-5	0.576	INTRON haf
2R	6660950	2R_6660950_DEL [dm3] 2R_10773445_DEL [dm6]	CGCTGCCCATCCTCTGCTCC...	C	2.998e^-5	0.577	INTRON CG33144
3R	22744090	3R_22744090_SNP [dm3] 3R_26918368_SNP [dm6]	T	G	3.144e^-5	0.577	INTRON sda
3R	5411756	3R_5411756_SNP [dm3] 3R_9586034_SNP [dm6]	T	G	3.204e^-5	0.577	NON_SYNONYMOUS_CODING CG8301 UPSTREAM P58IPK
3L	9757624	3L_9757624_SNP [dm3] 3L_9764524_SNP [dm6]	A	G	3.210e^-5	0.577	INTRON CG8177
2L	1578630	2L_1578630_SNP [dm3] 2L_1578630_SNP [dm6]	A	G	3.238e^-5	0.577	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17531383	3R_17531383_SNP [dm3] 3R_21705661_SNP [dm6]	T	C	3.263e^-5	0.577	INTRON CG31176
2R	13669766	2R_13669766_SNP [dm3] 2R_17782261_SNP [dm6]	C	A	3.304e^-5	0.577	UPSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2486328	2L_2486328_SNP [dm3] 2L_2486328_SNP [dm6]	G	A	3.309e^-5	0.577	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
3L	11002952	3L_11002952_SNP [dm3] 3L_11009852_SNP [dm6]	A	C	3.326e^-5	0.577	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3R	10012536	3R_10012536_SNP [dm3] 3R_14186814_SNP [dm6]	C	T	3.355e^-5	0.577	INTRON Dop1R1
3R	22552249	3R_22552249_SNP [dm3] 3R_26726527_SNP [dm6]	G	A	3.401e^-5	0.577	UTR_3_PRIME CG14244 UPSTREAM CG14246
3R	22552256	3R_22552256_SNP [dm3] 3R_26726534_SNP [dm6]	C	A	3.401e^-5	0.577	UTR_3_PRIME CG14244 UPSTREAM CG14246
3R	22552281	3R_22552281_SNP [dm3] 3R_26726559_SNP [dm6]	A	G	3.401e^-5	0.577	UTR_3_PRIME CG14244 UPSTREAM CG14246
2L	7391619	2L_7391619_SNP [dm3] 2L_7391619_SNP [dm6]	C	T	3.483e^-5	0.577	DOWNSTREAM gudu INTRON CG5160
3R	19157164	3R_19157164_SNP [dm3] 3R_23331442_SNP [dm6]	G	T	3.587e^-5	0.577	INTRON pnt
3L	21153922	3L_21153922_SNP [dm3] 3L_21160822_SNP [dm6]	C	T	3.628e^-5	0.577	UTR_5_PRIME Ac78C
2L	1614360	2L_1614360_SNP [dm3] 2L_1614360_SNP [dm6]	T	G	3.682e^-5	0.577	UPSTREAM RFeSP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2L	3458705	2L_3458705_SNP [dm3] 2L_3458705_SNP [dm6]	C	G	3.730e^-5	0.577	SYNONYMOUS_CODING Sec5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17176297	3R_17176297_INS [dm3] 3R_21350575_INS [dm6]	A	AA	3.746e^-5	0.577	UPSTREAM CG16791 DOWNSTREAM mod_mdg4_ INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	9217784	X_9217784_INS [dm3] X_9323751_INS [dm6]	A	ATCAAACAA	3.761e^-5	0.577	DOWNSTREAM CG34449 INTRON c12.2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7391615	2L_7391615_SNP [dm3] 2L_7391615_SNP [dm6]	A	G	3.791e^-5	0.577	DOWNSTREAM gudu INTRON CG5160
2R	12285567	2R_12285567_SNP [dm3] 2R_16398062_SNP [dm6]	C	T	3.827e^-5	0.577	UPSTREAM Sema-2b INTRON Sema-2b
2L	4036849	2L_4036849_SNP [dm3] 2L_4036849_SNP [dm6]	C	A	3.841e^-5	0.577	INTRON ed
2R	12285219	2R_12285219_SNP [dm3] 2R_16397714_SNP [dm6]	G	A	3.861e^-5	0.577	INTRON Sema-2b
3L	6635225	3L_6635225_SNP [dm3] 3L_6642125_SNP [dm6]	T	C	3.869e^-5	0.577	UPSTREAM CR45239 DOWNSTREAM CR45238 INTERGENIC
2R	13669796	2R_13669796_SNP [dm3] 2R_17782291_SNP [dm6]	C	T	3.875e^-5	0.577	UPSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16576803	2R_16576803_SNP [dm3] 2R_20689298_SNP [dm6]	T	C	3.893e^-5	0.577	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13762614	3R_13762614_SNP [dm3] 3R_17936892_SNP [dm6]	A	T	3.933e^-5	0.577	INTRON cpo
3R	21102818	3R_21102818_SNP [dm3] 3R_25277096_SNP [dm6]	A	G	3.942e^-5	0.577	SYNONYMOUS_CODING CG10513	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21102819	3R_21102819_SNP [dm3] 3R_25277097_SNP [dm6]	T	C	3.942e^-5	0.577	NON_SYNONYMOUS_CODING CG10513	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1840027	2R_1840027_DEL [dm3] 2R_5952522_DEL [dm6]	CAGTGCAC	C	3.970e^-5	0.577	INTERGENIC
2R	12285192	2R_12285192_SNP [dm3] 2R_16397687_SNP [dm6]	C	T	3.973e^-5	0.577	INTRON Sema-2b
X	3218998	X_3218998_SNP [dm3] X_3324965_SNP [dm6]	T	C	4.022e^-5	0.577	INTRON CR44886 & 1 other
3L	21095035	3L_21095035_SNP [dm3] 3L_21101935_SNP [dm6]	A	T	4.024e^-5	0.577	INTRON ko	regulatory region REDfly_CRMs
2R	13669755	2R_13669755_SNP [dm3] 2R_17782250_SNP [dm6]	G	C	4.033e^-5	0.577	UPSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26732159	3R_26732159_SNP [dm3] 3R_30906437_SNP [dm6]	A	G	4.129e^-5	0.577	INTERGENIC
2L	18882687	2L_18882687_SNP [dm3] 2L_18882687_SNP [dm6]	G	A	4.217e^-5	0.577	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1601834	2L_1601834_SNP [dm3] 2L_1601834_SNP [dm6]	C	T	4.239e^-5	0.577	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_cad
3L	2471118	3L_2471118_INS [dm3] 3L_2471118_INS [dm6]	T	TT	4.260e^-5	0.577	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	21236422	3L_21236422_SNP [dm3] 3L_21243322_SNP [dm6]	T	C	4.273e^-5	0.577	INTRON Eip78C
2L	1579909	2L_1579909_SNP [dm3] 2L_1579909_SNP [dm6]	C	G	4.375e^-5	0.577	INTRON haf
2R	15060493	2R_15060493_SNP [dm3] 2R_19172988_SNP [dm6]	T	A	4.404e^-5	0.577	INTRON CG10737
3R	6679787	3R_6679787_SNP [dm3] 3R_10854065_SNP [dm6]	G	A	4.425e^-5	0.577	SYNONYMOUS_CODING CG6567 UPSTREAM CG4511 DOWNSTREAM CG4565	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	6747976	2R_6747976_SNP [dm3] 2R_10860471_SNP [dm6]	G	A	4.446e^-5	0.577	DOWNSTREAM CR44302 INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13671122	2R_13671122_SNP [dm3] 2R_17783617_SNP [dm6]	T	A	4.449e^-5	0.577	DOWNSTREAM mir-31a INTERGENIC
3L	23944473	3L_23944473_SNP [dm3] 3L_23951373_SNP [dm6]	C	A	4.546e^-5	0.577	INTRON CG40470
2R	16905198	2R_16905198_INS [dm3] 2R_21017693_INS [dm6]	A	ACTTA	4.603e^-5	0.577	UPSTREAM RIC-3 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	19083516	3R_19083516_SNP [dm3] 3R_23257794_SNP [dm6]	T	A	4.616e^-5	0.577	UPSTREAM CG13827 INTRON wda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6682323	3R_6682323_SNP [dm3] 3R_10856601_SNP [dm6]	G	A	4.616e^-5	0.577	UPSTREAM CG4570 DOWNSTREAM CG4511 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6684439	3R_6684439_SNP [dm3] 3R_10858717_SNP [dm6]	A	T	4.616e^-5	0.577	SYNONYMOUS_CODING CG14694 DOWNSTREAM CG4570	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	14951911	3L_14951911_SNP [dm3] 3L_14958811_SNP [dm6]	A	G	4.617e^-5	0.577	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	4263103	3L_4263103_SNP [dm3] 3L_4263103_SNP [dm6]	T	C	4.620e^-5	0.577	UTR_3_PRIME VhaM9.7-a UPSTREAM CG11586 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27010374	3R_27010374_SNP [dm3] 3R_31184652_SNP [dm6]	T	C	4.621e^-5	0.577	SYNONYMOUS_CODING mesh
3R	23625839	3R_23625839_SNP [dm3] 3R_27800117_SNP [dm6]	G	T	4.649e^-5	0.577	INTRON CG34353
3R	22997703	3R_22997703_SNP [dm3] 3R_27171981_SNP [dm6]	C	T	4.659e^-5	0.577	DOWNSTREAM Ser INTERGENIC	regulatory region REDfly_CRMs
2L	2949190	2L_2949190_SNP [dm3] 2L_2949190_SNP [dm6]	T	C	4.675e^-5	0.577	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7853552	3L_7853552_SNP [dm3] 3L_7860452_SNP [dm6]	C	T	4.757e^-5	0.583	INTRON Pdp1
X	15141111	X_15141111_INS [dm3] X_15247078_INS [dm6]	T	TCGGACATAATTAAAAGTTT...	4.879e^-5	0.584	INTERGENIC
2L	1540233	2L_1540233_SNP [dm3] 2L_1540233_SNP [dm6]	G	A	4.897e^-5	0.584	INTERGENIC
3L	2513771	3L_2513771_SNP [dm3] 3L_2513771_SNP [dm6]	A	G	4.911e^-5	0.584	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12275318	2R_12275318_SNP [dm3] 2R_16387813_SNP [dm6]	T	A	4.932e^-5	0.584	INTRON Sema-2b
2R	13669753	2R_13669753_SNP [dm3] 2R_17782248_SNP [dm6]	T	G	5.004e^-5	0.584	UPSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13358850	2L_13358850_SNP [dm3] 2L_13358850_SNP [dm6]	G	T	5.012e^-5	0.584	INTERGENIC
3L	4482014	3L_4482014_SNP [dm3] 3L_4482014_SNP [dm6]	A	T	5.050e^-5	0.584	UPSTREAM CG11350 DOWNSTREAM CG7465 INTERGENIC
X	17845068	X_17845068_SNP [dm3] X_17951035_SNP [dm6]	A	G	5.056e^-5	0.584	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2513370	3L_2513370_SNP [dm3] 3L_2513370_SNP [dm6]	G	C	5.074e^-5	0.584	NON_SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6635359	3L_6635359_SNP [dm3] 3L_6642259_SNP [dm6]	C	T	5.123e^-5	0.584	DOWNSTREAM CR45238 EXON CR45239
2L	1611193	2L_1611193_SNP [dm3] 2L_1611193_SNP [dm6]	G	A	5.151e^-5	0.584	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	1601510	2L_1601510_SNP [dm3] 2L_1601510_SNP [dm6]	C	T	5.157e^-5	0.584	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22554275	3R_22554275_SNP [dm3] 3R_26728553_SNP [dm6]	G	A	5.169e^-5	0.584	UPSTREAM CG14245 INTRON CG14246	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1575081	2L_1575081_SNP [dm3] 2L_1575081_SNP [dm6]	G	A	5.266e^-5	0.587	INTRON haf
3R	21855992	3R_21855992_SNP [dm3] 3R_26030270_SNP [dm6]	C	T	5.288e^-5	0.587	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26002383	3R_26002383_SNP [dm3] 3R_30176661_SNP [dm6]	G	A	5.326e^-5	0.587	SYNONYMOUS_CODING CG1983
3L	5866852	3L_5866852_SNP [dm3] 3L_5873752_SNP [dm6]	A	T	5.339e^-5	0.587	SYNONYMOUS_CODING CG18586 DOWNSTREAM CG5568
2L	8837684	2L_8837684_SNP [dm3] 2L_8837684_SNP [dm6]	G	A	5.425e^-5	0.587	INTERGENIC
3R	17652680	3R_17652680_SNP [dm3] 3R_21826958_SNP [dm6]	T	C	5.437e^-5	0.587	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
2R	16679449	2R_16679449_SNP [dm3] 2R_20791944_SNP [dm6]	A	G	5.470e^-5	0.587	SYNONYMOUS_CODING CG43668 UPSTREAM CG43677
3R	17200389	3R_17200389_SNP [dm3] 3R_21374667_SNP [dm6]	C	T	5.479e^-5	0.587	INTRON mod_mdg4_	TF binding site mE1_TFBS_sens
2R	13718522	2R_13718522_SNP [dm3] 2R_17831017_SNP [dm6]	C	T	5.501e^-5	0.587	SYNONYMOUS_CODING grh	TF binding site mE1_TFBS_cad
3R	2626031	3R_2626031_SNP [dm3] 3R_6800309_SNP [dm6]	G	A	5.524e^-5	0.587	INTRON Dfd	regulatory region FlyBase REDfly_CRMs
3R	21568598	3R_21568598_SNP [dm3] 3R_25742876_SNP [dm6]	T	A	5.561e^-5	0.587	INTRON LpR1
2L	15921114	2L_15921114_SNP [dm3] 2L_15921114_SNP [dm6]	T	G	5.568e^-5	0.587	INTRON beat-Ib
3R	17210402	3R_17210402_SNP [dm3] 3R_21384680_SNP [dm6]	T	C	5.612e^-5	0.588	INTERGENIC	regulatory region REDfly_CRMs
3R	26002422	3R_26002422_SNP [dm3] 3R_30176700_SNP [dm6]	G	A	5.679e^-5	0.592	SYNONYMOUS_CODING CG1983
3R	26003976	3R_26003976_SNP [dm3] 3R_30178254_SNP [dm6]	C	T	5.712e^-5	0.592	SYNONYMOUS_CODING CG15530 UPSTREAM CG1983	TF binding site mE1_TFBS_chinmo
2L	4036949	2L_4036949_SNP [dm3] 2L_4036949_SNP [dm6]	G	T	5.758e^-5	0.592	INTRON ed
3R	22552277	3R_22552277_SNP [dm3] 3R_26726555_SNP [dm6]	C	T	5.794e^-5	0.592	UTR_3_PRIME CG14244 UPSTREAM CG14246
3R	20240735	3R_20240735_SNP [dm3] 3R_24415013_SNP [dm6]	T	A	5.842e^-5	0.592	INTRON nAChRalpha1
3R	24658738	3R_24658738_SNP [dm3] 3R_28833016_SNP [dm6]	A	G	5.843e^-5	0.592	UTR_3_PRIME Apc UPSTREAM WASp
3L	6635260	3L_6635260_DEL [dm3] 3L_6642160_DEL [dm6]	TTTTTAAG	A	5.884e^-5	0.593	UPSTREAM CR45239 DOWNSTREAM CR45238 INTERGENIC
3R	21862204	3R_21862204_SNP [dm3] 3R_26036482_SNP [dm6]	T	A	5.938e^-5	0.594	UPSTREAM E_spl_m7-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14199151	3R_14199151_DEL [dm3] 3R_18373429_DEL [dm6]	TCTA	GT	6.008e^-5	0.594	UPSTREAM gl DOWNSTREAM CG14310 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21236401	3L_21236401_DEL [dm3] 3L_21243301_DEL [dm6]	GCAAGGTGG	G	6.040e^-5	0.594	INTRON Eip78C
3R	22552374	3R_22552374_SNP [dm3] 3R_26726652_SNP [dm6]	C	A	6.047e^-5	0.594	UTR_3_PRIME CG14244 UPSTREAM CG14246
2L	6602307	2L_6602307_SNP [dm3] 2L_6602307_SNP [dm6]	G	A	6.049e^-5	0.594	INTERGENIC
X	9217776	X_9217776_DEL [dm3] X_9323743_DEL [dm6]	ACCCATTT	A	6.129e^-5	0.599	DOWNSTREAM CG34449 INTRON c12.2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1597698	2L_1597698_SNP [dm3] 2L_1597698_SNP [dm6]	A	G	6.228e^-5	0.604	INTRON haf & 1 other	TF binding site mE1_TFBS_chinmo
3R	20637259	3R_20637259_SNP [dm3] 3R_24811537_SNP [dm6]	A	G	6.251e^-5	0.604	INTRON CG5807
2R	1072483	2R_1072483_SNP [dm3] 2R_5184978_SNP [dm6]	A	G	6.355e^-5	0.61	INTRON Nipped-A
3R	22665081	3R_22665081_SNP [dm3] 3R_26839359_SNP [dm6]	G	C	6.388e^-5	0.61	SYNONYMOUS_CODING Tl
3L	1898360	3L_1898360_SNP [dm3] 3L_1898360_SNP [dm6]	C	T	6.418e^-5	0.61	UPSTREAM CG1887 INTRON CG1887
3L	21096661	3L_21096661_SNP [dm3] 3L_21103561_SNP [dm6]	T	C	6.464e^-5	0.61	INTRON ko	regulatory region REDfly_CRMs
3R	11159918	3R_11159918_SNP [dm3] 3R_15334196_SNP [dm6]	G	A	6.494e^-5	0.61	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	12336202	2R_12336202_SNP [dm3] 2R_16448697_SNP [dm6]	A	G	6.532e^-5	0.61	INTERGENIC
2L	18894426	2L_18894426_SNP [dm3] 2L_18894426_SNP [dm6]	T	C	6.581e^-5	0.61	EXON CR44737	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
2L	1584398	2L_1584398_SNP [dm3] 2L_1584398_SNP [dm6]	C	T	6.605e^-5	0.61	DOWNSTREAM CG10869 INTRON haf
2L	1576666	2L_1576666_SNP [dm3] 2L_1576666_SNP [dm6]	G	T	6.626e^-5	0.61	INTRON haf
2L	19831677	2L_19831677_SNP [dm3] 2L_19831677_SNP [dm6]	A	G	6.720e^-5	0.61	INTRON sick	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10089310	3L_10089310_SNP [dm3] 3L_10096210_SNP [dm6]	G	A	6.737e^-5	0.61	SYNONYMOUS_CODING CG42825 INTRON dpr6
3L	12162331	3L_12162331_SNP [dm3] 3L_12169231_SNP [dm6]	G	A	6.748e^-5	0.61	INTRON Rh7
3L	21144250	3L_21144250_SNP [dm3] 3L_21151150_SNP [dm6]	G	T	6.762e^-5	0.61	UPSTREAM Ac78C INTRON Ac78C
2R	19022085	2R_19022085_SNP [dm3] 2R_23134562_SNP [dm6]	T	A	6.766e^-5	0.61	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	11815966	2R_11815966_SNP [dm3] 2R_15928461_SNP [dm6]	C	A	6.841e^-5	0.612	UPSTREAM bdg INTRON bdg
3L	21153942	3L_21153942_SNP [dm3] 3L_21160842_SNP [dm6]	A	T	6.934e^-5	0.612	UTR_5_PRIME Ac78C
2L	5658215	2L_5658215_SNP [dm3] 2L_5658215_SNP [dm6]	G	C	6.939e^-5	0.612	INTRON CG31646	TF binding site BDTNP1_TFBS_dl
2R	13669738	2R_13669738_INS [dm3] 2R_17782233_INS [dm6]	A	AG	6.978e^-5	0.612	UPSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	13826368	X_13826368_SNP [dm3] X_13932335_SNP [dm6]	C	A	6.997e^-5	0.612	INTRON mamo
2L	11056663	2L_11056663_SNP [dm3] 2L_11056663_SNP [dm6]	A	G	7.001e^-5	0.612	UPSTREAM Samuel INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26001877	3R_26001877_SNP [dm3] 3R_30176155_SNP [dm6]	A	G	7.014e^-5	0.612	UTR_3_PRIME CG1983 DOWNSTREAM CG1983
3L	7740127	3L_7740127_SNP [dm3] 3L_7747027_SNP [dm6]	G	A	7.055e^-5	0.612	UPSTREAM CG13685 INTRON CG32373
3L	4482086	3L_4482086_SNP [dm3] 3L_4482086_SNP [dm6]	C	T	7.127e^-5	0.615	UPSTREAM CG11350 DOWNSTREAM CG7465 INTERGENIC
2L	1584833	2L_1584833_SNP [dm3] 2L_1584833_SNP [dm6]	C	G	7.180e^-5	0.615	DOWNSTREAM CG10869 INTRON haf
2R	14923389	2R_14923389_SNP [dm3] 2R_19035884_SNP [dm6]	G	A	7.182e^-5	0.615	SYNONYMOUS_CODING CG15115
2L	2949171	2L_2949171_SNP [dm3] 2L_2949171_SNP [dm6]	G	A	7.225e^-5	0.616	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5564485	2L_5564485_INS [dm3] 2L_5564485_INS [dm6]	A	AA	7.260e^-5	0.616	DOWNSTREAM GluRIIB & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	15294646	X_15294646_SNP [dm3] X_15400613_SNP [dm6]	T	C	7.342e^-5	0.62	INTRON Cngl
3L	19214909	3L_19214909_SNP [dm3] 3L_19221809_SNP [dm6]	G	T	7.396e^-5	0.622	INTRON fz2
3L	12859033	3L_12859033_SNP [dm3] 3L_12865933_SNP [dm6]	A	C	7.460e^-5	0.625	INTERGENIC
2R	6719236	2R_6719236_SNP [dm3] 2R_10831731_SNP [dm6]	G	C	7.504e^-5	0.625	INTRON CG12344	TF binding site mE1_TFBS_inv
2R	10332281	2R_10332281_INS [dm3] 2R_14444776_INS [dm6]	C	CAATATTGTAC...	7.627e^-5	0.626	INTRON Oaz
2L	12162706	2L_12162706_SNP [dm3] 2L_12162706_SNP [dm6]	A	C	7.632e^-5	0.626	DOWNSTREAM CG31861 INTRON CG31760
3R	21061980	3R_21061980_SNP [dm3] 3R_25236258_SNP [dm6]	A	G	7.643e^-5	0.626	UPSTREAM CG10420 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	22554014	3R_22554014_SNP [dm3] 3R_26728292_SNP [dm6]	T	C	7.644e^-5	0.626	UPSTREAM CG14245 INTRON CG14246	TF binding site mE1_TFBS_chinmo
3L	10456300	3L_10456300_SNP [dm3] 3L_10463200_SNP [dm6]	C	A	7.816e^-5	0.628	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	25106368	3R_25106368_SNP [dm3] 3R_29280646_SNP [dm6]	T	G	7.826e^-5	0.628	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1567921	2L_1567921_SNP [dm3] 2L_1567921_SNP [dm6]	A	T	7.837e^-5	0.628	INTRON haf
3L	14367085	3L_14367085_SNP [dm3] 3L_14373985_SNP [dm6]	T	C	7.879e^-5	0.628	INTERGENIC
X	19938112	X_19938112_SNP [dm3] X_20044079_SNP [dm6]	T	A	7.899e^-5	0.628	INTRON Dop2R
2L	7391607	2L_7391607_SNP [dm3] 2L_7391607_SNP [dm6]	T	C	7.934e^-5	0.628	DOWNSTREAM gudu INTRON CG5160
3R	2510148	3R_2510148_SNP [dm3] 3R_6684426_SNP [dm6]	G	A	7.944e^-5	0.628	UPSTREAM Edg84A INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9450372	2R_9450372_SNP [dm3] 2R_13562867_SNP [dm6]	A	T	7.947e^-5	0.628	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2R	9438470	2R_9438470_SNP [dm3] 2R_13550965_SNP [dm6]	T	G	7.999e^-5	0.628	UTR_5_PRIME CG33156 UPSTREAM CG33156 INTRON CG33156
2R	10033882	2R_10033882_SNP [dm3] 2R_14146377_SNP [dm6]	T	C	8.005e^-5	0.628	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	6496307	3R_6496307_SNP [dm3] 3R_10670585_SNP [dm6]	A	C	8.038e^-5	0.628	INTERGENIC
2L	4038005	2L_4038005_SNP [dm3] 2L_4038005_SNP [dm6]	A	T	8.074e^-5	0.628	INTRON ed
3L	4264251	3L_4264251_SNP [dm3] 3L_4264251_SNP [dm6]	A	C	8.177e^-5	0.633	DOWNSTREAM VhaM9.7-a INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1574985	2L_1574985_SNP [dm3] 2L_1574985_SNP [dm6]	C	G	8.217e^-5	0.633	INTRON haf
2R	12285560	2R_12285560_SNP [dm3] 2R_16398055_SNP [dm6]	C	T	8.272e^-5	0.633	UPSTREAM Sema-2b INTRON Sema-2b
X	15293917	X_15293917_SNP [dm3] X_15399884_SNP [dm6]	C	T	8.318e^-5	0.633	INTRON Cngl
2R	14907200	2R_14907200_SNP [dm3] 2R_19019695_SNP [dm6]	C	A	8.338e^-5	0.633	INTERGENIC
2R	6747965	2R_6747965_SNP [dm3] 2R_10860460_SNP [dm6]	A	T	8.339e^-5	0.633	DOWNSTREAM CR44302 INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3963620	2L_3963620_SNP [dm3] 2L_3963620_SNP [dm6]	G	C	8.407e^-5	0.633	INTRON fred	TF binding site mE1_TFBS_bab1
2R	19035190	2R_19035190_SNP [dm3] 2R_23147667_SNP [dm6]	A	C	8.470e^-5	0.633	INTERGENIC
2R	3221817	2R_3221817_INS [dm3] 2R_7334312_INS [dm6]	T	TT	8.562e^-5	0.633	INTRON Dscam1 & 1 other	TF binding site mE1_TFBS_chinmo
3R	15191531	3R_15191531_SNP [dm3] 3R_19365809_SNP [dm6]	G	C	8.572e^-5	0.633	INTERGENIC
3R	18941053	3R_18941053_SNP [dm3] 3R_23115331_SNP [dm6]	T	C	8.582e^-5	0.633	INTRON Rassf	TF binding site mE1_TFBS_sens
3R	20638913	3R_20638913_SNP [dm3] 3R_24813191_SNP [dm6]	G	C	8.599e^-5	0.633	INTRON CG5807	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	16416524	3R_16416524_SNP [dm3] 3R_20590802_SNP [dm6]	G	T	8.635e^-5	0.633	DOWNSTREAM CG4159 INTRON Srp72	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17168812	3R_17168812_SNP [dm3] 3R_21343090_SNP [dm6]	A	C	8.646e^-5	0.633	INTRON CG16791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13673835	2R_13673835_SNP [dm3] 2R_17786330_SNP [dm6]	G	T	8.646e^-5	0.633	NON_SYNONYMOUS_CODING aft
3L	4262227	3L_4262227_SNP [dm3] 3L_4262227_SNP [dm6]	T	G	8.673e^-5	0.633	UPSTREAM VhaM9.7-a DOWNSTREAM CG1309 INTRON CG11586	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	2774082	2R_2774082_SNP [dm3] 2R_6886577_SNP [dm6]	A	T	8.771e^-5	0.635	NON_SYNONYMOUS_CODING Spn42De
3L	21057119	3L_21057119_SNP [dm3] 3L_21064019_SNP [dm6]	G	A	8.804e^-5	0.635	UTR_5_PRIME siz INTRON siz
3L	9217138	3L_9217138_SNP [dm3] 3L_9224038_SNP [dm6]	T	C	8.840e^-5	0.635	INTERGENIC
X	7939965	X_7939965_SNP [dm3] X_8045932_SNP [dm6]	C	A	8.853e^-5	0.635	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
2R	19022709	2R_19022709_SNP [dm3] 2R_23135186_SNP [dm6]	C	A	8.867e^-5	0.635	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8655734	2L_8655734_SNP [dm3] 2L_8655734_SNP [dm6]	T	C	9.023e^-5	0.643	SYNONYMOUS_CODING Sema-1a
3L	10818734	3L_10818734_SNP [dm3] 3L_10825634_SNP [dm6]	G	C	9.065e^-5	0.644	DOWNSTREAM CR45246 INTERGENIC
3R	5704975	3R_5704975_SNP [dm3] 3R_9879253_SNP [dm6]	T	A	9.140e^-5	0.644	UPSTREAM CR45029 INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17185020	3R_17185020_SNP [dm3] 3R_21359298_SNP [dm6]	C	T	9.166e^-5	0.644	UTR_5_PRIME pre-mod_mdg4_-L & 1 other UPSTREAM pre-mod_mdg4_-Z & 1 other INTRON mod_mdg4_ & 4 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	9053177	3L_9053177_SNP [dm3] 3L_9060077_SNP [dm6]	A	C	9.171e^-5	0.644	INTRON Argk
2L	4551289	2L_4551289_SNP [dm3] 2L_4551289_SNP [dm6]	C	G	9.376e^-5	0.656	INTRON dp
3R	26004210	3R_26004210_SNP [dm3] 3R_30178488_SNP [dm6]	C	G	9.432e^-5	0.656	SYNONYMOUS_CODING CG15530 UPSTREAM CG1983	TF binding site mE1_TFBS_chinmo
2R	6795946	2R_6795946_SNP [dm3] 2R_10908441_SNP [dm6]	G	C	9.514e^-5	0.656	INTERGENIC
2L	1569851	2L_1569851_SNP [dm3] 2L_1569851_SNP [dm6]	A	T	9.531e^-5	0.656	INTRON haf
2L	12586507	2L_12586507_SNP [dm3] 2L_12586507_SNP [dm6]	G	A	9.553e^-5	0.656	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9052231	3L_9052231_SNP [dm3] 3L_9059131_SNP [dm6]	A	G	9.557e^-5	0.656	INTRON Argk
3R	13767545	3R_13767545_SNP [dm3] 3R_17941823_SNP [dm6]	G	T	9.595e^-5	0.656	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7263631	2R_7263631_DEL [dm3] 2R_11376126_DEL [dm6]	AATAC	A	9.626e^-5	0.656	INTRON CG13203	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15216562	2R_15216562_SNP [dm3] 2R_19329057_SNP [dm6]	G	T	9.676e^-5	0.656	NON_SYNONYMOUS_CODING Rgk1	TF binding site mE1_TFBS_inv
3L	12000994	3L_12000994_SNP [dm3] 3L_12007894_SNP [dm6]	A	C	9.687e^-5	0.656	UTR_3_PRIME CG6928 DOWNSTREAM rols
3R	17168831	3R_17168831_SNP [dm3] 3R_21343109_SNP [dm6]	G	A	9.761e^-5	0.658	INTRON CG16791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16774185	2R_16774185_SNP [dm3] 2R_20886680_SNP [dm6]	T	G	9.874e^-5	0.659	SYNONYMOUS_CODING otp
2L	6303995	2L_6303995_SNP [dm3] 2L_6303995_SNP [dm6]	G	A	9.908e^-5	0.659	INTRON Ddr
3L	9063091	3L_9063091_DEL [dm3] 3L_9069991_DEL [dm6]	TTATTCTTTGT...	T	9.953e^-5	0.659	UTR_3_PRIME CG4911
X	13055757	X_13055757_SNP [dm3] X_13161724_SNP [dm6]	G	T	9.965e^-5	0.659	UTR_3_PRIME CG12096 & 1 other DOWNSTREAM CG12096
2R	14447711	2R_14447711_SNP [dm3] 2R_18560206_SNP [dm6]	G	T	1.001e^-4	0.659	NON_SYNONYMOUS_CODING GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22011214	3R_22011214_SNP [dm3] 3R_26185492_SNP [dm6]	G	C	1.001e^-4	0.659	UTR_5_PRIME CG31086 UTR_3_PRIME CG31323 UPSTREAM CG31086 DOWNSTREAM CG31323
2R	9438465	2R_9438465_SNP [dm3] 2R_13550960_SNP [dm6]	T	G	1.003e^-4	0.659	UTR_5_PRIME CG33156 UPSTREAM CG33156 INTRON CG33156
3L	1379010	3L_1379010_SNP [dm3] 3L_1379010_SNP [dm6]	C	T	1.006e^-4	0.659	UPSTREAM tRNA:CR32330 INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14341380	2R_14341380_SNP [dm3] 2R_18453875_SNP [dm6]	A	G	1.009e^-4	0.659	SYNONYMOUS_CODING CG17669	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	2266130	3R_2266130_SNP [dm3] 3R_6440408_SNP [dm6]	T	C	1.015e^-4	0.66	SYNONYMOUS_CODING gpp	TF binding site mE1_TFBS_cad
2R	19022105	2R_19022105_SNP [dm3] 2R_23134582_SNP [dm6]	T	A	1.017e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	25998070	3R_25998070_SNP [dm3] 3R_30172348_SNP [dm6]	A	C	1.024e^-4	0.662	UTR_3_PRIME Mlc2
3L	2513471	3L_2513471_SNP [dm3] 3L_2513471_SNP [dm6]	G	C	1.031e^-4	0.665	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21856127	3R_21856127_SNP [dm3] 3R_26030405_SNP [dm6]	G	T	1.036e^-4	0.665	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	6093930	2L_6093930_SNP [dm3] 2L_6093930_SNP [dm6]	T	C	1.048e^-4	0.665	SYNONYMOUS_CODING Kr-h1 UTR_3_PRIME CG45075	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21162693	3L_21162693_SNP [dm3] 3L_21169593_SNP [dm6]	G	A	1.054e^-4	0.665	INTRON Ac78C
2R	12879949	2R_12879949_SNP [dm3] 2R_16992444_SNP [dm6]	A	T	1.060e^-4	0.665	INTRON Cbp53E
2L	1612301	2L_1612301_SNP [dm3] 2L_1612301_SNP [dm6]	A	G	1.061e^-4	0.665	SYNONYMOUS_CODING CG14352 DOWNSTREAM RFeSP	TF binding site mE1_TFBS_inv
3L	21246021	3L_21246021_SNP [dm3] 3L_21252921_SNP [dm6]	T	C	1.062e^-4	0.665	INTRON Eip78C	TF binding site mE1_TFBS_inv
3R	22553995	3R_22553995_SNP [dm3] 3R_26728273_SNP [dm6]	G	T	1.063e^-4	0.665	UPSTREAM CG14245 INTRON CG14246	TF binding site mE1_TFBS_chinmo
3L	1042795	3L_1042795_SNP [dm3] 3L_1042795_SNP [dm6]	A	T	1.067e^-4	0.665	INTRON bab1
2R	12879948	2R_12879948_SNP [dm3] 2R_16992443_SNP [dm6]	T	A	1.071e^-4	0.665	INTRON Cbp53E
2L	1613701	2L_1613701_SNP [dm3] 2L_1613701_SNP [dm6]	G	T	1.076e^-4	0.665	INTRON RFeSP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	18389984	2R_18389984_SNP [dm3] 2R_22502479_SNP [dm6]	T	C	1.085e^-4	0.665	INTRON px
X	20356753	X_20356753_SNP [dm3] X_20485726_SNP [dm6]	A	T	1.085e^-4	0.665	UPSTREAM CG15461 INTRON RhoGAP19D
3L	10823803	3L_10823803_SNP [dm3] 3L_10830703_SNP [dm6]	C	T	1.087e^-4	0.665	INTERGENIC
3R	25846387	3R_25846387_SNP [dm3] 3R_30020665_SNP [dm6]	A	T	1.089e^-4	0.665	INTRON Mgat2	TF binding site BDTNP1_TFBS_dl
2L	1610214	2L_1610214_SNP [dm3] 2L_1610214_SNP [dm6]	G	C	1.094e^-4	0.665	SYNONYMOUS_CODING CG31935	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19063933	2R_19063933_SNP [dm3] 2R_23176410_SNP [dm6]	A	G	1.095e^-4	0.665	INTRON CG34371
3R	21061664	3R_21061664_SNP [dm3] 3R_25235942_SNP [dm6]	G	A	1.103e^-4	0.665	UPSTREAM CG10420 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1628199	2R_1628199_SNP [dm3] 2R_5740694_SNP [dm6]	A	C	1.106e^-4	0.665	INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
3L	8466923	3L_8466923_SNP [dm3] 3L_8473823_SNP [dm6]	A	G	1.115e^-4	0.665	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11110566	3L_11110566_SNP [dm3] 3L_11117466_SNP [dm6]	G	A	1.116e^-4	0.665	SYNONYMOUS_CODING fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9206072	X_9206072_SNP [dm3] X_9312039_SNP [dm6]	G	A	1.117e^-4	0.665	INTERGENIC
2L	1580870	2L_1580870_SNP [dm3] 2L_1580870_SNP [dm6]	T	A	1.120e^-4	0.665	INTRON haf
3R	21854385	3R_21854385_SNP [dm3] 3R_26028663_SNP [dm6]	C	T	1.124e^-4	0.665	DOWNSTREAM E_spl_m5-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22713569	3R_22713569_SNP [dm3] 3R_26887847_SNP [dm6]	T	C	1.125e^-4	0.665	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7754671	2R_7754671_SNP [dm3] 2R_11867166_SNP [dm6]	C	T	1.126e^-4	0.665	UPSTREAM Damm DOWNSTREAM CG13185 EXON CR42532
3R	21568625	3R_21568625_SNP [dm3] 3R_25742903_SNP [dm6]	A	G	1.134e^-4	0.665	INTRON LpR1
3R	18529975	3R_18529975_SNP [dm3] 3R_22704253_SNP [dm6]	A	G	1.137e^-4	0.665	UTR_3_PRIME CG6972 DOWNSTREAM CG13842
2L	3732301	2L_3732301_SNP [dm3] 2L_3732301_SNP [dm6]	C	T	1.137e^-4	0.665	INTRON CG10019
3L	18468896	3L_18468896_SNP [dm3] 3L_18475796_SNP [dm6]	T	A	1.143e^-4	0.665	DOWNSTREAM CR44672 INTERGENIC
2L	5522879	2L_5522879_SNP [dm3] 2L_5522879_SNP [dm6]	T	C	1.143e^-4	0.665	SYNONYMOUS_CODING CG7371
3R	6678823	3R_6678823_SNP [dm3] 3R_10853101_SNP [dm6]	G	T	1.147e^-4	0.665	SYNONYMOUS_CODING CG4565 DOWNSTREAM CG6567	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	5866858	3L_5866858_SNP [dm3] 3L_5873758_SNP [dm6]	A	T	1.147e^-4	0.665	SYNONYMOUS_CODING CG18586 DOWNSTREAM CG5568
3L	11422505	3L_11422505_SNP [dm3] 3L_11429405_SNP [dm6]	A	G	1.148e^-4	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	13802032	2R_13802032_SNP [dm3] 2R_17914527_SNP [dm6]	T	C	1.156e^-4	0.667	INTRON Elk
3R	11298601	3R_11298601_SNP [dm3] 3R_15472879_SNP [dm6]	G	T	1.162e^-4	0.668	INTRON AdamTS-A	TF binding site mE1_TFBS_zfh1
2L	1559781	2L_1559781_SNP [dm3] 2L_1559781_SNP [dm6]	C	A	1.166e^-4	0.668	INTRON haf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1575755	2L_1575755_INS [dm3] 2L_1575755_INS [dm6]	T	TC	1.169e^-4	0.668	INTRON haf
2L	781554	2L_781554_SNP [dm3] 2L_781554_SNP [dm6]	A	G	1.171e^-4	0.668	SYNONYMOUS_CODING Gr21a	TF binding site mE1_TFBS_chinmo
2R	235675	2R_235675_SNP [dm3] 2R_4348170_SNP [dm6]	T	G	1.180e^-4	0.671	INTRON Gprk1
2L	11056585	2L_11056585_SNP [dm3] 2L_11056585_SNP [dm6]	T	C	1.187e^-4	0.673	UTR_5_PRIME Samuel INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10682687	3L_10682687_INS [dm3] 3L_10689587_INS [dm6]	A	ACA	1.205e^-4	0.674	UTR_3_PRIME simj DOWNSTREAM simj
X	3948087	X_3948087_SNP [dm3] X_4054054_SNP [dm6]	A	G	1.208e^-4	0.674	INTERGENIC
3R	17938265	3R_17938265_SNP [dm3] 3R_22112543_SNP [dm6]	A	C	1.220e^-4	0.674	UPSTREAM Ir94a INTERGENIC
2L	14764575	2L_14764575_SNP [dm3] 2L_14764575_SNP [dm6]	G	C	1.222e^-4	0.674	DOWNSTREAM CSN1a INTERGENIC
3R	9299107	3R_9299107_SNP [dm3] 3R_13473385_SNP [dm6]	G	T	1.224e^-4	0.674	INTERGENIC
3R	22375158	3R_22375158_SNP [dm3] 3R_26549436_SNP [dm6]	G	A	1.225e^-4	0.674	INTRON scrib
2L	1614323	2L_1614323_SNP [dm3] 2L_1614323_SNP [dm6]	G	A	1.226e^-4	0.674	UPSTREAM RFeSP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2R	9433360	2R_9433360_SNP [dm3] 2R_13545855_SNP [dm6]	A	C	1.230e^-4	0.674	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
3R	20433872	3R_20433872_DEL [dm3] 3R_24608150_DEL [dm6]	AA	A	1.231e^-4	0.674	INTRON mld
2L	2618219	2L_2618219_DEL [dm3] 2L_2618219_DEL [dm6]	GGATGGCTGG	G	1.235e^-4	0.674	INTERGENIC
3R	10061195	3R_10061195_SNP [dm3] 3R_14235473_SNP [dm6]	T	A	1.242e^-4	0.674	INTERGENIC
2R	13778189	2R_13778189_SNP [dm3] 2R_17890684_SNP [dm6]	G	A	1.248e^-4	0.674	UPSTREAM PPO1 INTRON Elk
3L	8725557	3L_8725557_SNP [dm3] 3L_8732457_SNP [dm6]	C	A	1.255e^-4	0.674	SPLICE_SITE_REGION Cp16 SYNONYMOUS_CODING Cp16 DOWNSTREAM Prm
3L	9488977	3L_9488977_INS [dm3] 3L_9495877_INS [dm6]	A	ATTAGAAAAA	1.257e^-4	0.674	INTRON path
2R	16653266	2R_16653266_SNP [dm3] 2R_20765761_SNP [dm6]	T	C	1.259e^-4	0.674	UPSTREAM CR44665 INTERGENIC
3L	21199429	3L_21199429_SNP [dm3] 3L_21206329_SNP [dm6]	T	C	1.267e^-4	0.674	SYNONYMOUS_CODING CG10512	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23800205	3R_23800205_SNP [dm3] 3R_27974483_SNP [dm6]	A	G	1.272e^-4	0.674	INTRON betaTub97EF
3L	9367626	3L_9367626_SNP [dm3] 3L_9374526_SNP [dm6]	A	G	1.281e^-4	0.674	SYNONYMOUS_CODING Hsp22 UTR_3_PRIME Hsp67Bb UPSTREAM CG4461 DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16159728	X_16159728_SNP [dm3] X_16265695_SNP [dm6]	G	A	1.285e^-4	0.674	SYNONYMOUS_CODING CG12507
2L	19838279	2L_19838279_SNP [dm3] 2L_19838279_SNP [dm6]	G	C	1.289e^-4	0.674	INTRON sick
2R	6932630	2R_6932630_SNP [dm3] 2R_11045125_SNP [dm6]	A	G	1.290e^-4	0.674	INTRON luna
X	15404467	X_15404467_SNP [dm3] X_15510434_SNP [dm6]	G	A	1.295e^-4	0.674	UTR_3_PRIME Gmap DOWNSTREAM mir-12 & 1 other	TF binding site mE1_TFBS_cad
3R	17531113	3R_17531113_SNP [dm3] 3R_21705391_SNP [dm6]	T	A	1.297e^-4	0.674	INTRON CG31176
3R	10078809	3R_10078809_SNP [dm3] 3R_14253087_SNP [dm6]	A	G	1.303e^-4	0.674	INTRON Aats-met
2R	7751239	2R_7751239_SNP [dm3] 2R_11863734_SNP [dm6]	A	G	1.305e^-4	0.674	UPSTREAM CG42531 & 1 other INTERGENIC
3R	26002444	3R_26002444_SNP [dm3] 3R_30176722_SNP [dm6]	C	T	1.305e^-4	0.674	NON_SYNONYMOUS_CODING CG1983
3L	10682998	3L_10682998_SNP [dm3] 3L_10689898_SNP [dm6]	A	G	1.307e^-4	0.674	UTR_3_PRIME simj DOWNSTREAM simj
2R	13718477	2R_13718477_SNP [dm3] 2R_17830972_SNP [dm6]	G	A	1.312e^-4	0.674	INTRON grh	TF binding site mE1_TFBS_cad
2R	14609240	2R_14609240_SNP [dm3] 2R_18721735_SNP [dm6]	C	A	1.313e^-4	0.674	INTRON Hs3st-A
X	16007230	X_16007230_SNP [dm3] X_16113197_SNP [dm6]	C	T	1.314e^-4	0.674	INTERGENIC
2L	6304182	2L_6304182_DEL [dm3] 2L_6304182_DEL [dm6]	AT	A	1.315e^-4	0.674	INTRON Ddr
2L	1596556	2L_1596556_SNP [dm3] 2L_1596556_SNP [dm6]	A	G	1.316e^-4	0.674	INTRON haf & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10445722	3R_10445722_SNP [dm3] 3R_14620000_SNP [dm6]	G	T	1.319e^-4	0.674	UTR_3_PRIME put DOWNSTREAM put	TF binding site mE1_TFBS_kn
3R	16540847	3R_16540847_SNP [dm3] 3R_20715125_SNP [dm6]	A	G	1.322e^-4	0.674	UPSTREAM Oamb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4424530	2L_4424530_SNP [dm3] 2L_4424530_SNP [dm6]	G	C	1.326e^-4	0.674	INTRON CG15431
3R	24671661	3R_24671661_SNP [dm3] 3R_28845939_SNP [dm6]	T	A	1.328e^-4	0.674	UTR_5_PRIME spg INTRON spg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2L	1584723	2L_1584723_SNP [dm3] 2L_1584723_SNP [dm6]	A	G	1.328e^-4	0.674	DOWNSTREAM CG10869 INTRON haf
2R	10625790	2R_10625790_SNP [dm3] 2R_14738285_SNP [dm6]	T	C	1.333e^-4	0.674	EXON CR43428
2R	16905228	2R_16905228_SNP [dm3] 2R_21017723_SNP [dm6]	A	T	1.336e^-4	0.674	UPSTREAM RIC-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	16884632	X_16884632_SNP [dm3] X_16990599_SNP [dm6]	A	C	1.336e^-4	0.674	INTRON CG45002	TF binding site BDTNP1_TFBS_hb
3R	21061688	3R_21061688_SNP [dm3] 3R_25235966_SNP [dm6]	G	T	1.348e^-4	0.674	UPSTREAM CG10420 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19645508	3L_19645508_SNP [dm3] 3L_19652408_SNP [dm6]	G	A	1.351e^-4	0.674	SYNONYMOUS_CODING tey	TF binding site mE1_TFBS_cad
X	9013159	X_9013159_SNP [dm3] X_9119126_SNP [dm6]	C	A	1.351e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15904103	3L_15904103_SNP [dm3] 3L_15911003_SNP [dm6]	A	G	1.351e^-4	0.674	INTRON sff
2L	14399147	2L_14399147_SNP [dm3] 2L_14399147_SNP [dm6]	C	A	1.351e^-4	0.674	INTRON elB
2L	3832859	2L_3832859_SNP [dm3] 2L_3832859_SNP [dm6]	G	A	1.362e^-4	0.677	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	21061701	3R_21061701_SNP [dm3] 3R_25235979_SNP [dm6]	A	G	1.368e^-4	0.678	UPSTREAM CG10420 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19323097	2L_19323097_SNP [dm3] 2L_19323097_SNP [dm6]	T	A	1.380e^-4	0.68	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	1807611	3L_1807611_SNP [dm3] 3L_1807611_SNP [dm6]	G	A	1.381e^-4	0.68	UPSTREAM CR45686 DOWNSTREAM CG42676 EXON CR45687
2R	16905279	2R_16905279_SNP [dm3] 2R_21017774_SNP [dm6]	C	A	1.388e^-4	0.68	UPSTREAM RIC-3 & 1 other INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	18157683	3L_18157683_SNP [dm3] 3L_18164583_SNP [dm6]	T	C	1.388e^-4	0.68	INTERGENIC
X	7943283	X_7943283_SNP [dm3] X_8049250_SNP [dm6]	T	A	1.398e^-4	0.68	UTR_3_PRIME fs_1_h DOWNSTREAM fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
2R	12285499	2R_12285499_SNP [dm3] 2R_16397994_SNP [dm6]	C	T	1.402e^-4	0.68	UPSTREAM Sema-2b INTRON Sema-2b
3L	16974239	3L_16974239_SNP [dm3] 3L_16981139_SNP [dm6]	T	G	1.404e^-4	0.68	SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
X	1343094	X_1343094_SNP [dm3] X_1449061_SNP [dm6]	A	T	1.407e^-4	0.68	UTR_3_PRIME futsch	TF binding site mE1_TFBS_HSA
2L	1580549	2L_1580549_SNP [dm3] 2L_1580549_SNP [dm6]	A	C	1.407e^-4	0.68	INTRON haf
3R	26751021	3R_26751021_SNP [dm3] 3R_30925299_SNP [dm6]	A	G	1.409e^-4	0.68	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi
3L	2471173	3L_2471173_SNP [dm3] 3L_2471173_SNP [dm6]	C	A	1.410e^-4	0.68	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	7901123	2L_7901123_SNP [dm3] 2L_7901123_SNP [dm6]	C	G	1.414e^-4	0.68	INTRON Snoo
3L	11241903	3L_11241903_SNP [dm3] 3L_11248803_SNP [dm6]	C	A	1.422e^-4	0.68	UPSTREAM CR44715 EXON CR44717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad
X	9206097	X_9206097_DEL [dm3] X_9312064_DEL [dm6]	GATGGATCAAGG...	G	1.437e^-4	0.68	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14809954	2L_14809954_SNP [dm3] 2L_14809954_SNP [dm6]	G	A	1.439e^-4	0.68	UPSTREAM CG33309 INTERGENIC
3L	2471129	3L_2471129_SNP [dm3] 3L_2471129_SNP [dm6]	T	G	1.440e^-4	0.68	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	9370460	3R_9370460_SNP [dm3] 3R_13544738_SNP [dm6]	A	G	1.440e^-4	0.68	INTRON CG31337
2R	16904952	2R_16904952_SNP [dm3] 2R_21017447_SNP [dm6]	A	G	1.442e^-4	0.68	UPSTREAM RIC-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	18826091	3R_18826091_SNP [dm3] 3R_23000369_SNP [dm6]	C	T	1.450e^-4	0.68	UTR_3_PRIME CG34375	TF binding site mE1_TFBS_chinmo
2L	1114017	2L_1114017_SNP [dm3] 2L_1114017_SNP [dm6]	C	T	1.451e^-4	0.68	UTR_3_PRIME CG14340 DOWNSTREAM Pino
3L	10853110	3L_10853110_SNP [dm3] 3L_10860010_SNP [dm6]	C	T	1.454e^-4	0.68	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16540846	3R_16540846_SNP [dm3] 3R_20715124_SNP [dm6]	T	C	1.455e^-4	0.68	UPSTREAM Oamb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19918284	3R_19918284_SNP [dm3] 3R_24092562_SNP [dm6]	A	G	1.456e^-4	0.68	INTRON 4EHP	TF binding site BDTNP1_TFBS_dl
2R	10033886	2R_10033886_SNP [dm3] 2R_14146381_SNP [dm6]	T	G	1.457e^-4	0.68	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	9488981	3L_9488981_SNP [dm3] 3L_9495881_SNP [dm6]	G	A	1.468e^-4	0.68	INTRON path
2L	1609469	2L_1609469_SNP [dm3] 2L_1609469_SNP [dm6]	T	C	1.473e^-4	0.68	INTRON CG31935	TF binding site mE1_TFBS_cad
3L	1898203	3L_1898203_SNP [dm3] 3L_1898203_SNP [dm6]	G	A	1.478e^-4	0.68	UPSTREAM CG1887 INTRON CG1887
2L	1535038	2L_1535038_SNP [dm3] 2L_1535038_SNP [dm6]	C	T	1.485e^-4	0.68	INTERGENIC
X	6865089	X_6865089_SNP [dm3] X_6971056_SNP [dm6]	C	T	1.487e^-4	0.68	INTRON CG4586	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16980910	3L_16980910_SNP [dm3] 3L_16987810_SNP [dm6]	A	G	1.494e^-4	0.68	INTRON Exn
3R	25045743	3R_25045743_SNP [dm3] 3R_29220021_SNP [dm6]	T	C	1.499e^-4	0.68	UPSTREAM Ef1gamma DOWNSTREAM CR31044 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	15407871	2R_15407871_SNP [dm3] 2R_19520366_SNP [dm6]	T	C	1.502e^-4	0.68	UTR_3_PRIME sm
3R	5702054	3R_5702054_SNP [dm3] 3R_9876332_SNP [dm6]	C	G	1.505e^-4	0.68	DOWNSTREAM CR45029 INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15213498	2R_15213498_SNP [dm3] 2R_19325993_SNP [dm6]	C	G	1.510e^-4	0.68	SYNONYMOUS_CODING Rgk1 UPSTREAM Rgk1	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
3R	19157171	3R_19157171_SNP [dm3] 3R_23331449_SNP [dm6]	A	C	1.512e^-4	0.68	INTRON pnt
3L	10846701	3L_10846701_SNP [dm3] 3L_10853601_SNP [dm6]	T	C	1.516e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5522822	2L_5522822_SNP [dm3] 2L_5522822_SNP [dm6]	G	T	1.516e^-4	0.68	SYNONYMOUS_CODING CG7371	TF binding site mE1_TFBS_sens
3L	21232228	3L_21232228_SNP [dm3] 3L_21239128_SNP [dm6]	A	G	1.518e^-4	0.68	INTRON Eip78C
X	7943287	X_7943287_SNP [dm3] X_8049254_SNP [dm6]	G	A	1.524e^-4	0.68	UTR_3_PRIME fs_1_h DOWNSTREAM fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
2R	9324183	2R_9324183_SNP [dm3] 2R_13436678_SNP [dm6]	T	C	1.526e^-4	0.68	SYNONYMOUS_CODING CG42321 INTRON CG42321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1575046	2L_1575046_SNP [dm3] 2L_1575046_SNP [dm6]	T	C	1.532e^-4	0.68	INTRON haf
2L	22082332	2L_22082332_SNP [dm3] 2L_22082332_SNP [dm6]	A	G	1.535e^-4	0.68	INTERGENIC	transposable element FlyBase
3L	9488190	3L_9488190_SNP [dm3] 3L_9495090_SNP [dm6]	C	T	1.537e^-4	0.68	UTR_3_PRIME path
3L	7857083	3L_7857083_SNP [dm3] 3L_7863983_SNP [dm6]	A	T	1.542e^-4	0.68	INTRON Pdp1
3R	2350909	3R_2350909_SNP [dm3] 3R_6525187_SNP [dm6]	A	T	1.545e^-4	0.68	INTERGENIC
2L	19838287	2L_19838287_SNP [dm3] 2L_19838287_SNP [dm6]	G	A	1.560e^-4	0.68	INTRON sick	TF binding site BDTNP1_TFBS_twi
2L	1580652	2L_1580652_SNP [dm3] 2L_1580652_SNP [dm6]	G	A	1.567e^-4	0.68	INTRON haf
2L	2000492	2L_2000492_SNP [dm3] 2L_2000492_SNP [dm6]	A	G	1.569e^-4	0.68	INTRON CG33543 EXON CR43464
X	19009454	X_19009454_INS [dm3] X_19115421_INS [dm6]	C	CATAATC	1.572e^-4	0.68	INTERGENIC
2R	19109973	2R_19109973_SNP [dm3] 2R_23222450_SNP [dm6]	T	A	1.572e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6168715	2R_6168715_SNP [dm3] 2R_10281210_SNP [dm6]	G	A	1.573e^-4	0.68	NON_SYNONYMOUS_CODING CAP UPSTREAM CAP INTRON CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17649689	3R_17649689_SNP [dm3] 3R_21823967_SNP [dm6]	C	G	1.574e^-4	0.68	EXON CR45632	TF binding site BDTNP1_TFBS_dl
3R	17195413	3R_17195413_SNP [dm3] 3R_21369691_SNP [dm6]	G	A	1.577e^-4	0.68	SYNONYMOUS_CODING pre-mod_mdg4_-U DOWNSTREAM mod_mdg4_ & 2 others INTRON mod_mdg4_
2L	9215277	2L_9215277_SNP [dm3] 2L_9215277_SNP [dm6]	T	C	1.583e^-4	0.68	INTRON tai
3L	7278506	3L_7278506_SNP [dm3] 3L_7285406_SNP [dm6]	T	C	1.584e^-4	0.68	INTRON unc-13-4A
3L	4098733	3L_4098733_SNP [dm3] 3L_4098733_SNP [dm6]	G	A	1.587e^-4	0.68	INTRON CG14995	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	10683009	3L_10683009_SNP [dm3] 3L_10689909_SNP [dm6]	A	G	1.590e^-4	0.68	UTR_3_PRIME simj DOWNSTREAM simj
X	16883973	X_16883973_SNP [dm3] X_16989940_SNP [dm6]	C	G	1.590e^-4	0.68	INTRON CG45002
2R	10332207	2R_10332207_SNP [dm3] 2R_14444702_SNP [dm6]	C	A	1.596e^-4	0.68	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	1807888	3L_1807888_SNP [dm3] 3L_1807888_SNP [dm6]	C	A	1.597e^-4	0.68	UPSTREAM CR45686 DOWNSTREAM CG42676 & 1 other INTERGENIC
3R	11156096	3R_11156096_SNP [dm3] 3R_15330374_SNP [dm6]	A	C	1.599e^-4	0.68	UTR_3_PRIME ea UPSTREAM mRpL9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2R	16922892	2R_16922892_SNP [dm3] 2R_21035387_SNP [dm6]	A	G	1.601e^-4	0.68	INTERGENIC
3L	14366853	3L_14366853_SNP [dm3] 3L_14373753_SNP [dm6]	T	A	1.606e^-4	0.68	INTERGENIC
2R	12794696	2R_12794696_SNP [dm3] 2R_16907191_SNP [dm6]	C	T	1.610e^-4	0.68	INTERGENIC
X	16884053	X_16884053_SNP [dm3] X_16990020_SNP [dm6]	G	A	1.613e^-4	0.68	INTRON CG45002
2R	12805670	2R_12805670_SNP [dm3] 2R_16918165_SNP [dm6]	C	G	1.614e^-4	0.68	INTERGENIC
3L	13838436	3L_13838436_SNP [dm3] 3L_13845336_SNP [dm6]	T	A	1.617e^-4	0.68	UPSTREAM Hml DOWNSTREAM Tsp68C INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_run
2R	14532301	2R_14532301_SNP [dm3] 2R_18644796_SNP [dm6]	C	A	1.620e^-4	0.68	INTRON SP2637	TF binding site BDTNP1_TFBS_da
2L	1596307	2L_1596307_SNP [dm3] 2L_1596307_SNP [dm6]	G	A	1.622e^-4	0.68	SYNONYMOUS_CODING CG31935 INTRON haf	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1580645	2L_1580645_SNP [dm3] 2L_1580645_SNP [dm6]	T	G	1.627e^-4	0.68	INTRON haf
3R	14632626	3R_14632626_SNP [dm3] 3R_18806904_SNP [dm6]	T	C	1.629e^-4	0.68	SYNONYMOUS_CODING CG18208	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12336293	2R_12336293_SNP [dm3] 2R_16448788_SNP [dm6]	G	T	1.633e^-4	0.681	INTERGENIC
2R	13671211	2R_13671211_SNP [dm3] 2R_17783706_SNP [dm6]	A	G	1.638e^-4	0.681	DOWNSTREAM mir-31a INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6083474	2R_6083474_INS [dm3] 2R_10195969_INS [dm6]	C	CC	1.659e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	1705746	3L_1705746_SNP [dm3] 3L_1705746_SNP [dm6]	C	T	1.667e^-4	0.682	INTRON CG7991	TF binding site mE1_TFBS_HSA
3L	2513633	3L_2513633_SNP [dm3] 3L_2513633_SNP [dm6]	G	T	1.669e^-4	0.682	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4918222	2L_4918222_SNP [dm3] 2L_4918222_SNP [dm6]	T	C	1.672e^-4	0.682	INTRON hoe1
3L	16974194	3L_16974194_SNP [dm3] 3L_16981094_SNP [dm6]	A	G	1.676e^-4	0.682	SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
3R	26754631	3R_26754631_SNP [dm3] 3R_30928909_SNP [dm6]	A	C	1.680e^-4	0.682	INTRON Ptx1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	21854081	3R_21854081_DEL [dm3] 3R_26028359_DEL [dm6]	GA	G	1.681e^-4	0.682	DOWNSTREAM E_spl_m5-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12693301	3L_12693301_SNP [dm3] 3L_12700201_SNP [dm6]	G	A	1.681e^-4	0.682	INTRON mirr	TF binding site BDTNP1_TFBS_twi
2R	15334806	2R_15334806_SNP [dm3] 2R_19447301_SNP [dm6]	C	A	1.682e^-4	0.682	DOWNSTREAM betaTub56D INTERGENIC	TF binding site mE1_TFBS_cad
2L	1614181	2L_1614181_SNP [dm3] 2L_1614181_SNP [dm6]	G	A	1.683e^-4	0.682	UPSTREAM RFeSP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3R	22602413	3R_22602413_SNP [dm3] 3R_26776691_SNP [dm6]	C	T	1.684e^-4	0.682	INTERGENIC
3R	5733099	3R_5733099_SNP [dm3] 3R_9907377_SNP [dm6]	C	A	1.685e^-4	0.682	INTRON Glut4EF
3L	866540	3L_866540_SNP [dm3] 3L_866540_SNP [dm6]	A	G	1.689e^-4	0.683	UTR_5_PRIME CG12502 INTRON CG12502	TF binding site BDTNP1_TFBS_dl
2R	6441601	2R_6441601_DEL [dm3] 2R_10554096_DEL [dm6]	AAA	A	1.698e^-4	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	1585299	2L_1585299_SNP [dm3] 2L_1585299_SNP [dm6]	G	T	1.712e^-4	0.686	SYNONYMOUS_CODING CG10869 INTRON haf
X	15359503	X_15359503_SNP [dm3] X_15465470_SNP [dm6]	A	C	1.715e^-4	0.686	SPLICE_SITE_REGION CG6299 UTR_5_PRIME CG6299 UPSTREAM CG6299 DOWNSTREAM CG6294 & 1 other INTRON CG6299 & 1 other	TF binding site mE1_TFBS_chinmo
3R	20651913	3R_20651913_SNP [dm3] 3R_24826191_SNP [dm6]	A	G	1.720e^-4	0.686	UPSTREAM niki DOWNSTREAM RabX4 INTRON CG43166	transposable element FlyBase
X	10459204	X_10459204_SNP [dm3] X_10565171_SNP [dm6]	T	A	1.721e^-4	0.686	DOWNSTREAM CG15296 INTRON spri
2L	9167630	2L_9167630_SNP [dm3] 2L_9167630_SNP [dm6]	A	G	1.734e^-4	0.686	INTRON tai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	1614389	2L_1614389_SNP [dm3] 2L_1614389_SNP [dm6]	G	C	1.735e^-4	0.686	UPSTREAM RFeSP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3L	18580751	3L_18580751_SNP [dm3] 3L_18587651_SNP [dm6]	A	G	1.736e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	17203600	3R_17203600_SNP [dm3] 3R_21377878_SNP [dm6]	C	G	1.736e^-4	0.686	UPSTREAM mod_mdg4_ INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17157749	3L_17157749_SNP [dm3] 3L_17164649_SNP [dm6]	T	A	1.739e^-4	0.686	INTRON Rbp6
2R	14447694	2R_14447694_SNP [dm3] 2R_18560189_SNP [dm6]	G	T	1.742e^-4	0.686	SYNONYMOUS_CODING GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5156871	3L_5156871_SNP [dm3] 3L_5163771_SNP [dm6]	G	T	1.750e^-4	0.686	INTRON shep
3R	13781689	3R_13781689_SNP [dm3] 3R_17955967_SNP [dm6]	T	G	1.751e^-4	0.686	INTRON cpo
3L	19496822	3L_19496822_SNP [dm3] 3L_19503722_SNP [dm6]	C	T	1.752e^-4	0.686	UTR_5_PRIME CG9452
2L	2843758	2L_2843758_SNP [dm3] 2L_2843758_SNP [dm6]	A	C	1.753e^-4	0.686	NON_SYNONYMOUS_CODING CG18558 SPLICE_SITE_REGION CG18558 DOWNSTREAM CG18557	TF binding site mE1_TFBS_cad
3L	18112600	3L_18112600_SNP [dm3] 3L_18119500_SNP [dm6]	C	T	1.757e^-4	0.686	DOWNSTREAM CG32195 INTRON CG7341	TF binding site mE1_TFBS_cad
2L	1614201	2L_1614201_SNP [dm3] 2L_1614201_SNP [dm6]	C	T	1.766e^-4	0.686	UPSTREAM RFeSP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3R	23414909	3R_23414909_SNP [dm3] 3R_27589187_SNP [dm6]	T	C	1.768e^-4	0.686	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17584787	X_17584787_SNP [dm3] X_17690754_SNP [dm6]	C	G	1.785e^-4	0.686	INTRON chas
2L	9859475	2L_9859475_SNP [dm3] 2L_9859475_SNP [dm6]	G	C	1.791e^-4	0.686	INTRON nAChRalpha6
2R	16905272	2R_16905272_SNP [dm3] 2R_21017767_SNP [dm6]	T	A	1.793e^-4	0.686	UPSTREAM RIC-3 & 1 other INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	1612785	2L_1612785_SNP [dm3] 2L_1612785_SNP [dm6]	A	G	1.793e^-4	0.686	SYNONYMOUS_CODING RFeSP DOWNSTREAM CG14352
2R	10332210	2R_10332210_SNP [dm3] 2R_14444705_SNP [dm6]	G	A	1.796e^-4	0.686	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	21096915	3L_21096915_SNP [dm3] 3L_21103815_SNP [dm6]	T	A	1.804e^-4	0.686	INTRON ko	regulatory region REDfly_CRMs
2R	18966764	2R_18966764_SNP [dm3] 2R_23079241_SNP [dm6]	A	T	1.809e^-4	0.686	UPSTREAM Art7 DOWNSTREAM CG43659 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	3467940	2R_3467940_SNP [dm3] 2R_7580435_SNP [dm6]	G	T	1.810e^-4	0.686	SYNONYMOUS_CODING Vps13 UPSTREAM CR45130 DOWNSTREAM blow
3R	25985882	3R_25985882_SNP [dm3] 3R_30160160_SNP [dm6]	G	C	1.817e^-4	0.686	UTR_5_PRIME CG11498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25986483	3R_25986483_SNP [dm3] 3R_30160761_SNP [dm6]	A	G	1.823e^-4	0.686	UPSTREAM CG11498 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1807817	3L_1807817_SNP [dm3] 3L_1807817_SNP [dm6]	C	T	1.825e^-4	0.686	UPSTREAM CR45686 DOWNSTREAM CG42676 EXON CR45687
3L	1807847	3L_1807847_INS [dm3] 3L_1807847_INS [dm6]	G	GGGGG	1.825e^-4	0.686	UPSTREAM CR45686 DOWNSTREAM CG42676 EXON CR45687
3L	10072900	3L_10072900_SNP [dm3] 3L_10079800_SNP [dm6]	T	C	1.831e^-4	0.686	INTRON dpr6
2R	16905245	2R_16905245_SNP [dm3] 2R_21017740_SNP [dm6]	A	T	1.837e^-4	0.686	UPSTREAM RIC-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	13531260	2R_13531260_SNP [dm3] 2R_17643755_SNP [dm6]	T	A	1.837e^-4	0.686	INTERGENIC
3R	18114871	3R_18114871_SNP [dm3] 3R_22289149_SNP [dm6]	C	T	1.838e^-4	0.686	INTRON SKIP
X	7939959	X_7939959_DEL [dm3] X_8045926_DEL [dm6]	CCT	C	1.839e^-4	0.686	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
3R	10078678	3R_10078678_SNP [dm3] 3R_14252956_SNP [dm6]	T	C	1.844e^-4	0.686	INTRON Aats-met
2R	7953441	2R_7953441_SNP [dm3] 2R_12065936_SNP [dm6]	C	T	1.848e^-4	0.686	SYNONYMOUS_CODING CG8888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	3864842	3L_3864842_SNP [dm3] 3L_3864842_SNP [dm6]	C	T	1.851e^-4	0.686	UPSTREAM CR45379 INTERGENIC
3R	11190446	3R_11190446_SNP [dm3] 3R_15364724_SNP [dm6]	T	C	1.860e^-4	0.686	SYNONYMOUS_CODING CG34404 UPSTREAM CG6171	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14772656	3R_14772656_SNP [dm3] 3R_18946934_SNP [dm6]	T	C	1.861e^-4	0.686	INTRON CG42613
2R	19113290	2R_19113290_SNP [dm3] 2R_23225767_SNP [dm6]	C	T	1.868e^-4	0.686	INTERGENIC
2R	12356219	2R_12356219_SNP [dm3] 2R_16468714_SNP [dm6]	T	C	1.874e^-4	0.686	INTRON CheB53b
2R	16905242	2R_16905242_SNP [dm3] 2R_21017737_SNP [dm6]	A	C	1.882e^-4	0.686	UPSTREAM RIC-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	21228071	3L_21228071_SNP [dm3] 3L_21234971_SNP [dm6]	C	G	1.886e^-4	0.686	INTRON Eip78C
2L	14404257	2L_14404257_SNP [dm3] 2L_14404257_SNP [dm6]	C	T	1.888e^-4	0.686	INTRON elB	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	10445712	3R_10445712_SNP [dm3] 3R_14619990_SNP [dm6]	A	G	1.893e^-4	0.686	UTR_3_PRIME put DOWNSTREAM put	TF binding site mE1_TFBS_kn
3L	10823787	3L_10823787_SNP [dm3] 3L_10830687_SNP [dm6]	A	T	1.897e^-4	0.686	INTERGENIC
3L	4264163	3L_4264163_SNP [dm3] 3L_4264163_SNP [dm6]	A	G	1.898e^-4	0.686	DOWNSTREAM VhaM9.7-a INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	11159975	3R_11159975_SNP [dm3] 3R_15334253_SNP [dm6]	A	G	1.898e^-4	0.686	SYNONYMOUS_CODING Sra-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	21228075	3L_21228075_SNP [dm3] 3L_21234975_SNP [dm6]	G	A	1.902e^-4	0.686	INTRON Eip78C
3L	10236726	3L_10236726_SNP [dm3] 3L_10243626_SNP [dm6]	T	C	1.904e^-4	0.686	UPSTREAM CR44541 INTRON Or67c
3R	20905180	3R_20905180_SNP [dm3] 3R_25079458_SNP [dm6]	A	T	1.924e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	5964905	X_5964905_SNP [dm3] X_6070872_SNP [dm6]	G	A	1.925e^-4	0.686	SYNONYMOUS_CODING Tsp5D	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
X	15295087	X_15295087_SNP [dm3] X_15401054_SNP [dm6]	A	T	1.929e^-4	0.686	INTRON Cngl	TF binding site BDTNP1_TFBS_dl
2R	10625482	2R_10625482_SNP [dm3] 2R_14737977_SNP [dm6]	T	C	1.932e^-4	0.686	EXON CR43428
3L	13838204	3L_13838204_SNP [dm3] 3L_13845104_SNP [dm6]	A	C	1.933e^-4	0.686	UTR_3_PRIME Tsp68C UPSTREAM Hml	TF binding site mE1_TFBS_bab1
3L	1898359	3L_1898359_SNP [dm3] 3L_1898359_SNP [dm6]	T	G	1.933e^-4	0.686	UPSTREAM CG1887 INTRON CG1887
2L	5522530	2L_5522530_SNP [dm3] 2L_5522530_SNP [dm6]	T	C	1.935e^-4	0.686	SYNONYMOUS_CODING CG7371
3R	6689173	3R_6689173_INS [dm3] 3R_10863451_INS [dm6]	T	TT	1.939e^-4	0.686	UTR_3_PRIME SelR UPSTREAM CG6574 DOWNSTREAM SelR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	1614381	2L_1614381_SNP [dm3] 2L_1614381_SNP [dm6]	C	A	1.944e^-4	0.686	UPSTREAM RFeSP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2R	12285146	2R_12285146_SNP [dm3] 2R_16397641_SNP [dm6]	G	A	1.950e^-4	0.686	INTRON Sema-2b
3L	9332008	3L_9332008_SNP [dm3] 3L_9338908_SNP [dm6]	G	T	1.953e^-4	0.686	DOWNSTREAM PGRP-LA INTRON PGRP-LC
X	16563487	X_16563487_SNP [dm3] X_16669454_SNP [dm6]	A	G	1.960e^-4	0.686	DOWNSTREAM r INTRON CG13012
3R	18114847	3R_18114847_SNP [dm3] 3R_22289125_SNP [dm6]	G	C	1.964e^-4	0.686	INTRON SKIP
2R	16905282	2R_16905282_SNP [dm3] 2R_21017777_SNP [dm6]	A	G	1.966e^-4	0.686	UPSTREAM RIC-3 & 1 other INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	9506809	3L_9506809_SNP [dm3] 3L_9513709_SNP [dm6]	A	G	1.967e^-4	0.686	UPSTREAM CG33702 DOWNSTREAM CG33700 EXON CR33701
2L	1932615	2L_1932615_SNP [dm3] 2L_1932615_SNP [dm6]	G	T	1.978e^-4	0.686	INTRON CG7337	TF binding site mE1_TFBS_jumu
3R	13664001	3R_13664001_SNP [dm3] 3R_17838279_SNP [dm6]	G	A	1.981e^-4	0.686	INTRON tinc	TF binding site mE1_TFBS_inv
3L	19468103	3L_19468103_SNP [dm3] 3L_19475003_SNP [dm6]	A	G	1.985e^-4	0.686	UPSTREAM CG32213 DOWNSTREAM CG18294 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	12090800	3R_12090800_SNP [dm3] 3R_16265078_SNP [dm6]	T	G	1.986e^-4	0.686	SYNONYMOUS_CODING asun UPSTREAM bor	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17184974	3R_17184974_SNP [dm3] 3R_21359252_SNP [dm6]	C	G	1.988e^-4	0.686	UTR_5_PRIME pre-mod_mdg4_-L & 1 other UPSTREAM pre-mod_mdg4_-Z & 1 other INTRON mod_mdg4_ & 4 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3R	20025887	3R_20025887_SNP [dm3] 3R_24200165_SNP [dm6]	C	A	1.988e^-4	0.686	INTRON twin
X	9217752	X_9217752_SNP [dm3] X_9323719_SNP [dm6]	G	A	1.993e^-4	0.686	SPLICE_SITE_REGION c12.2 DOWNSTREAM CG34449 INTRON c12.2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21337484	2L_21337484_SNP [dm3] 2L_21337484_SNP [dm6]	C	T	1.994e^-4	0.686	INTRON dimm	transposable element FlyBase
2L	2000455	2L_2000455_SNP [dm3] 2L_2000455_SNP [dm6]	T	C	1.998e^-4	0.686	INTRON CG33543 EXON CR43464
2R	12285334	2R_12285334_SNP [dm3] 2R_16397829_SNP [dm6]	G	A	2.002e^-4	0.686	INTRON Sema-2b
3L	8252776	3L_8252776_SNP [dm3] 3L_8259676_SNP [dm6]	C	T	2.003e^-4	0.686	INTRON Dscam4
2R	9958860	2R_9958860_SNP [dm3] 2R_14071355_SNP [dm6]	T	A	2.004e^-4	0.686	INTRON Prosap
3R	14199118	3R_14199118_SNP [dm3] 3R_18373396_SNP [dm6]	G	A	2.006e^-4	0.686	UPSTREAM gl DOWNSTREAM CG14310 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10332263	2R_10332263_SNP [dm3] 2R_14444758_SNP [dm6]	C	T	2.006e^-4	0.686	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	20105592	3R_20105592_SNP [dm3] 3R_24279870_SNP [dm6]	G	T	2.015e^-4	0.686	SYNONYMOUS_CODING CG13611	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12586685	2L_12586685_INS [dm3] 2L_12586685_INS [dm6]	A	AAAGACA	2.017e^-4	0.686	UPSTREAM nub INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14367618	3L_14367618_SNP [dm3] 3L_14374518_SNP [dm6]	C	T	2.026e^-4	0.686	INTERGENIC
3L	14666567	3L_14666567_SNP [dm3] 3L_14673467_SNP [dm6]	A	T	2.026e^-4	0.686	UPSTREAM tRNA:M3:70Fb DOWNSTREAM tRNA:M3:70Fa INTRON ome	TF binding site mE1_TFBS_HSA
3L	11422577	3L_11422577_INS [dm3] 3L_11429477_INS [dm6]	T	TCAATACAT	2.028e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	16282926	2R_16282926_SNP [dm3] 2R_20395421_SNP [dm6]	T	C	2.036e^-4	0.686	INTERGENIC
3R	24926994	3R_24926994_SNP [dm3] 3R_29101272_SNP [dm6]	A	C	2.047e^-4	0.686	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12859045	3L_12859045_SNP [dm3] 3L_12865945_SNP [dm6]	C	T	2.048e^-4	0.686	INTERGENIC
2L	21337344	2L_21337344_SNP [dm3] 2L_21337344_SNP [dm6]	A	T	2.059e^-4	0.686	INTRON dimm
3L	17157734	3L_17157734_SNP [dm3] 3L_17164634_SNP [dm6]	A	G	2.066e^-4	0.686	INTRON Rbp6
2L	1611999	2L_1611999_SNP [dm3] 2L_1611999_SNP [dm6]	C	A	2.073e^-4	0.686	UPSTREAM CG31935 DOWNSTREAM RFeSP INTRON CG14352	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	13684643	3L_13684643_SNP [dm3] 3L_13691543_SNP [dm6]	G	T	2.087e^-4	0.686	INTRON bru-3
3L	15718185	3L_15718185_SNP [dm3] 3L_15725085_SNP [dm6]	A	C	2.088e^-4	0.686	INTRON comm
X	15140057	X_15140057_SNP [dm3] X_15246024_SNP [dm6]	C	T	2.091e^-4	0.686	INTERGENIC
2L	4944952	2L_4944952_SNP [dm3] 2L_4944952_SNP [dm6]	A	G	2.106e^-4	0.686	SYNONYMOUS_CODING mRpL24 UPSTREAM betaggt-I DOWNSTREAM CG14044	TF binding site mE1_TFBS_Ubx
2L	1563327	2L_1563327_SNP [dm3] 2L_1563327_SNP [dm6]	C	A	2.107e^-4	0.686	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8300251	2L_8300251_SNP [dm3] 2L_8300251_SNP [dm6]	T	G	2.111e^-4	0.686	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Trl
2R	5147754	2R_5147754_SNP [dm3] 2R_9260249_SNP [dm6]	T	A	2.112e^-4	0.686	DOWNSTREAM CG34141 INTRON Pkn	TF binding site mE1_TFBS_cad
3R	15820397	3R_15820397_SNP [dm3] 3R_19994675_SNP [dm6]	A	T	2.113e^-4	0.686	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	22554693	3R_22554693_SNP [dm3] 3R_26728971_SNP [dm6]	G	C	2.118e^-4	0.686	NON_SYNONYMOUS_CODING CG14245 INTRON CG14246
3R	25111211	3R_25111211_INS [dm3] 3R_29285489_INS [dm6]	C	CCC	2.120e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	7523973	2L_7523973_SNP [dm3] 2L_7523973_SNP [dm6]	G	A	2.133e^-4	0.686	INTRON RapGAP1
2L	1597178	2L_1597178_SNP [dm3] 2L_1597178_SNP [dm6]	G	A	2.138e^-4	0.686	INTRON haf & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3703031	2L_3703031_SNP [dm3] 2L_3703031_SNP [dm6]	A	G	2.147e^-4	0.686	UPSTREAM CG2816 DOWNSTREAM CG43145 & 1 other INTERGENIC
2L	13254430	2L_13254430_SNP [dm3] 2L_13254430_SNP [dm6]	T	A	2.147e^-4	0.686	INTRON CG31728
3L	6173135	3L_6173135_SNP [dm3] 3L_6180035_SNP [dm6]	A	G	2.149e^-4	0.686	SYNONYMOUS_CODING CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	20648093	3R_20648093_SNP [dm3] 3R_24822371_SNP [dm6]	T	A	2.154e^-4	0.686	DOWNSTREAM niki & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	6211424	3L_6211424_SNP [dm3] 3L_6218324_SNP [dm6]	C	A	2.161e^-4	0.686	UPSTREAM LanA INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1017961	3L_1017961_SNP [dm3] 3L_1017961_SNP [dm6]	G	T	2.163e^-4	0.686	INTRON trio
3L	10533954	3L_10533954_SNP [dm3] 3L_10540854_SNP [dm6]	C	G	2.175e^-4	0.686	INTRON A2bp1
3R	22554093	3R_22554093_SNP [dm3] 3R_26728371_SNP [dm6]	G	A	2.176e^-4	0.686	UPSTREAM CG14245 INTRON CG14246	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14437695	3R_14437695_SNP [dm3] 3R_18611973_SNP [dm6]	C	G	2.178e^-4	0.686	INTRON qin & 1 other
2R	10332175	2R_10332175_SNP [dm3] 2R_14444670_SNP [dm6]	G	C	2.183e^-4	0.686	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	10332193	2R_10332193_SNP [dm3] 2R_14444688_SNP [dm6]	T	A	2.183e^-4	0.686	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	10332235	2R_10332235_SNP [dm3] 2R_14444730_SNP [dm6]	T	C	2.183e^-4	0.686	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	10332237	2R_10332237_SNP [dm3] 2R_14444732_SNP [dm6]	T	C	2.183e^-4	0.686	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	10332250	2R_10332250_SNP [dm3] 2R_14444745_SNP [dm6]	C	T	2.183e^-4	0.686	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	11244236	3L_11244236_SNP [dm3] 3L_11251136_SNP [dm6]	A	G	2.188e^-4	0.686	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	25114789	3R_25114789_SNP [dm3] 3R_29289067_SNP [dm6]	C	T	2.199e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19810710	2L_19810710_SNP [dm3] 2L_19810710_SNP [dm6]	A	G	2.200e^-4	0.686	UPSTREAM snRNA:U4:38AB INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad
X	4322695	X_4322695_SNP [dm3] X_4428662_SNP [dm6]	T	C	2.204e^-4	0.686	SYNONYMOUS_CODING bi INTRON CR32773	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	6908909	3R_6908909_SNP [dm3] 3R_11083187_SNP [dm6]	C	A	2.207e^-4	0.686	INTERGENIC
2R	14555004	2R_14555004_SNP [dm3] 2R_18667499_SNP [dm6]	G	T	2.225e^-4	0.686	DOWNSTREAM edl INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9251474	2L_9251474_SNP [dm3] 2L_9251474_SNP [dm6]	A	T	2.233e^-4	0.686	UTR_3_PRIME borr UPSTREAM aust & 1 other
2L	1582350	2L_1582350_SNP [dm3] 2L_1582350_SNP [dm6]	C	G	2.241e^-4	0.686	INTRON haf
2R	16942911	2R_16942911_SNP [dm3] 2R_21055406_SNP [dm6]	T	G	2.246e^-4	0.686	INTRON shg	TF binding site BDTNP1_TFBS_dl
2R	18892885	2R_18892885_SNP [dm3] 2R_23005362_SNP [dm6]	C	T	2.246e^-4	0.686	INTRON twi
2L	1614240	2L_1614240_SNP [dm3] 2L_1614240_SNP [dm6]	A	G	2.250e^-4	0.686	UPSTREAM RFeSP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3L	18154050	3L_18154050_SNP [dm3] 3L_18160950_SNP [dm6]	C	T	2.252e^-4	0.686	INTRON CG13699	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7939101	X_7939101_INS [dm3] X_8045068_INS [dm6]	C	CTC	2.253e^-4	0.686	DOWNSTREAM fs_1_h INTRON fs_1_h
X	11652456	X_11652456_SNP [dm3] X_11758423_SNP [dm6]	C	T	2.254e^-4	0.686	INTRON m
3L	2335498	3L_2335498_INS [dm3] 3L_2335498_INS [dm6]	A	AA	2.262e^-4	0.686	INTRON MsR1
X	15297878	X_15297878_SNP [dm3] X_15403845_SNP [dm6]	A	G	2.268e^-4	0.686	INTRON Cngl
3R	9683309	3R_9683309_SNP [dm3] 3R_13857587_SNP [dm6]	G	T	2.275e^-4	0.686	INTERGENIC
3R	7826940	3R_7826940_SNP [dm3] 3R_12001218_SNP [dm6]	C	T	2.277e^-4	0.686	SYNONYMOUS_CODING Ect3 INTRON Tk
2R	10332232	2R_10332232_SNP [dm3] 2R_14444727_SNP [dm6]	G	C	2.278e^-4	0.686	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	8842505	2R_8842505_SNP [dm3] 2R_12955000_SNP [dm6]	A	G	2.285e^-4	0.686	SYNONYMOUS_CODING CG13321	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	7144883	X_7144883_SNP [dm3] X_7250850_SNP [dm6]	A	T	2.293e^-4	0.686	INTRON CR44357	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	1583475	2L_1583475_SNP [dm3] 2L_1583475_SNP [dm6]	A	T	2.293e^-4	0.686	INTRON haf
2R	13669771	2R_13669771_SNP [dm3] 2R_17782266_SNP [dm6]	T	A	2.296e^-4	0.686	UPSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9046168	3L_9046168_SNP [dm3] 3L_9053068_SNP [dm6]	G	A	2.297e^-4	0.686	INTRON Argk	TF binding site mE1_TFBS_HSA
3L	21137202	3L_21137202_SNP [dm3] 3L_21144102_SNP [dm6]	C	A	2.300e^-4	0.686	INTRON Ac78C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19094118	2R_19094118_SNP [dm3] 2R_23206595_SNP [dm6]	G	A	2.303e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	9757632	3L_9757632_SNP [dm3] 3L_9764532_SNP [dm6]	A	G	2.304e^-4	0.686	INTRON CG8177
3R	25642167	3R_25642167_SNP [dm3] 3R_29816445_SNP [dm6]	G	T	2.307e^-4	0.686	UTR_5_PRIME Vps16B DOWNSTREAM CG7829	TF binding site mE1_TFBS_cad
2R	10332247	2R_10332247_SNP [dm3] 2R_14444742_SNP [dm6]	G	T	2.311e^-4	0.686	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	5964899	X_5964899_SNP [dm3] X_6070866_SNP [dm6]	G	A	2.320e^-4	0.686	SYNONYMOUS_CODING Tsp5D	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	14019220	3R_14019220_SNP [dm3] 3R_18193498_SNP [dm6]	A	G	2.325e^-4	0.686	UTR_3_PRIME Ssdp
2R	18061084	2R_18061084_SNP [dm3] 2R_22173579_SNP [dm6]	G	T	2.329e^-4	0.686	DOWNSTREAM a INTRON CG3045	TF binding site mE1_TFBS_sens
3L	1807741	3L_1807741_SNP [dm3] 3L_1807741_SNP [dm6]	A	C	2.329e^-4	0.686	UPSTREAM CR45686 DOWNSTREAM CG42676 EXON CR45687
X	7938166	X_7938166_SNP [dm3] X_8044133_SNP [dm6]	G	A	2.330e^-4	0.686	INTRON fs_1_h	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2371363	2R_2371363_SNP [dm3] 2R_6483858_SNP [dm6]	T	C	2.331e^-4	0.686	INTERGENIC	transposable element FlyBase
3L	14185019	3L_14185019_SNP [dm3] 3L_14191919_SNP [dm6]	T	C	2.336e^-4	0.686	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
X	3219001	X_3219001_SNP [dm3] X_3324968_SNP [dm6]	A	G	2.341e^-4	0.686	INTRON CR44886 & 1 other
2R	6372362	2R_6372362_SNP [dm3] 2R_10484857_SNP [dm6]	T	G	2.344e^-4	0.686	UTR_5_PRIME pre-lola-G INTRON lola & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11416149	3L_11416149_SNP [dm3] 3L_11423049_SNP [dm6]	C	G	2.345e^-4	0.686	INTERGENIC	TF binding site mE1_TFBS_D
3L	10711813	3L_10711813_SNP [dm3] 3L_10718713_SNP [dm6]	T	C	2.356e^-4	0.686	INTERGENIC
3L	1557340	3L_1557340_SNP [dm3] 3L_1557340_SNP [dm6]	G	A	2.357e^-4	0.686	SYNONYMOUS_CODING CG12099 UPSTREAM Pex10	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1574583	2L_1574583_SNP [dm3] 2L_1574583_SNP [dm6]	G	A	2.357e^-4	0.686	INTRON haf
3R	18871828	3R_18871828_SNP [dm3] 3R_23046106_SNP [dm6]	G	A	2.357e^-4	0.686	INTRON CG17121
2R	8842511	2R_8842511_SNP [dm3] 2R_12955006_SNP [dm6]	T	C	2.359e^-4	0.686	SYNONYMOUS_CODING CG13321	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	7250110	X_7250110_INS [dm3] X_7356077_INS [dm6]	G	GC	2.362e^-4	0.686	INTRON CR44357 & 1 other
3R	13781571	3R_13781571_SNP [dm3] 3R_17955849_SNP [dm6]	T	G	2.363e^-4	0.686	INTRON cpo
3R	26003326	3R_26003326_SNP [dm3] 3R_30177604_SNP [dm6]	A	T	2.364e^-4	0.686	UPSTREAM CG15530 INTRON CG1983
3R	25520255	3R_25520255_SNP [dm3] 3R_29694533_SNP [dm6]	C	A	2.371e^-4	0.686	INTRON dmrt99B
3R	12040961	3R_12040961_SNP [dm3] 3R_16215239_SNP [dm6]	T	A	2.378e^-4	0.686	DOWNSTREAM CR45641 INTERGENIC
3L	5866846	3L_5866846_SNP [dm3] 3L_5873746_SNP [dm6]	A	T	2.379e^-4	0.686	SYNONYMOUS_CODING CG18586 DOWNSTREAM CG5568
X	3463375	X_3463375_SNP [dm3] X_3569342_SNP [dm6]	G	T	2.380e^-4	0.686	UPSTREAM ppk8 INTRON ppk8 & 1 other
3R	22887539	3R_22887539_SNP [dm3] 3R_27061817_SNP [dm6]	G	C	2.382e^-4	0.686	UPSTREAM CG34292 INTRON Nep5
2L	8538656	2L_8538656_SNP [dm3] 2L_8538656_SNP [dm6]	A	G	2.388e^-4	0.686	DOWNSTREAM CG17834 INTRON CG17834
X	4555079	X_4555079_DEL [dm3] X_4661046_DEL [dm6]	TATCGC	T	2.394e^-4	0.686	INTRON CG3009
3L	19496820	3L_19496820_SNP [dm3] 3L_19503720_SNP [dm6]	G	T	2.402e^-4	0.686	UTR_5_PRIME CG9452
2R	16708649	2R_16708649_SNP [dm3] 2R_20821144_SNP [dm6]	G	T	2.407e^-4	0.686	DOWNSTREAM insc INTERGENIC
3L	19417776	3L_19417776_SNP [dm3] 3L_19424676_SNP [dm6]	T	C	2.420e^-4	0.686	UPSTREAM CR42838 & 1 other DOWNSTREAM CG33255 INTERGENIC
3R	26635669	3R_26635669_INS [dm3] 3R_30809947_INS [dm6]	T	TG	2.424e^-4	0.686	INTRON cindr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14764576	2L_14764576_SNP [dm3] 2L_14764576_SNP [dm6]	G	T	2.425e^-4	0.686	DOWNSTREAM CSN1a INTERGENIC
3L	4218727	3L_4218727_SNP [dm3] 3L_4218727_SNP [dm6]	G	T	2.430e^-4	0.686	INTRON CG43367	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6654275	3R_6654275_SNP [dm3] 3R_10828553_SNP [dm6]	G	T	2.436e^-4	0.686	INTRON Cad86C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	17157744	3L_17157744_SNP [dm3] 3L_17164644_SNP [dm6]	G	T	2.451e^-4	0.686	INTRON Rbp6
3L	10975902	3L_10975902_SNP [dm3] 3L_10982802_SNP [dm6]	A	G	2.455e^-4	0.686	SYNONYMOUS_CODING klu	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16905241	2R_16905241_SNP [dm3] 2R_21017736_SNP [dm6]	G	A	2.457e^-4	0.686	UPSTREAM RIC-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	9450273	2R_9450273_SNP [dm3] 2R_13562768_SNP [dm6]	G	A	2.470e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	1614182	2L_1614182_SNP [dm3] 2L_1614182_SNP [dm6]	T	C	2.474e^-4	0.686	UPSTREAM RFeSP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3L	21236703	3L_21236703_SNP [dm3] 3L_21243603_SNP [dm6]	C	T	2.475e^-4	0.686	INTRON Eip78C
3R	10012867	3R_10012867_DEL [dm3] 3R_14187145_DEL [dm6]	CCGGCTTGACTGCCTGC...	C	2.478e^-4	0.686	INTRON Dop1R1
2R	12073820	2R_12073820_SNP [dm3] 2R_16186315_SNP [dm6]	C	T	2.478e^-4	0.686	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6637146	3L_6637146_DEL [dm3] 3L_6644046_DEL [dm6]	ATA	A	2.484e^-4	0.686	INTERGENIC
2R	10332255	2R_10332255_SNP [dm3] 2R_14444750_SNP [dm6]	A	G	2.485e^-4	0.686	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	5428924	2L_5428924_SNP [dm3] 2L_5428924_SNP [dm6]	A	G	2.486e^-4	0.686	INTERGENIC
2R	19259424	2R_19259424_SNP [dm3] 2R_23371901_SNP [dm6]	G	A	2.487e^-4	0.686	DOWNSTREAM Ice1 INTRON Golgin245
2R	19022104	2R_19022104_SNP [dm3] 2R_23134581_SNP [dm6]	A	T	2.493e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	13669842	2R_13669842_SNP [dm3] 2R_17782337_SNP [dm6]	T	G	2.500e^-4	0.686	UPSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	10080592	3R_10080592_SNP [dm3] 3R_14254870_SNP [dm6]	G	A	2.500e^-4	0.686	INTRON Aats-met
3R	25161372	3R_25161372_SNP [dm3] 3R_29335650_SNP [dm6]	T	C	2.504e^-4	0.686	INTERGENIC
2L	7522956	2L_7522956_SNP [dm3] 2L_7522956_SNP [dm6]	C	T	2.504e^-4	0.686	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4858965	X_4858965_SNP [dm3] X_4964932_SNP [dm6]	G	T	2.504e^-4	0.686	INTRON CR44833
X	9504940	X_9504940_SNP [dm3] X_9610907_SNP [dm6]	C	A	2.507e^-4	0.686	SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10332200	2R_10332200_SNP [dm3] 2R_14444695_SNP [dm6]	G	T	2.508e^-4	0.686	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	8875389	3L_8875389_SNP [dm3] 3L_8882289_SNP [dm6]	C	T	2.510e^-4	0.686	INTRON dally
3L	8324603	3L_8324603_SNP [dm3] 3L_8331503_SNP [dm6]	G	A	2.520e^-4	0.686	INTERGENIC
3R	5412053	3R_5412053_SNP [dm3] 3R_9586331_SNP [dm6]	T	A	2.520e^-4	0.686	UTR_3_PRIME CG8301 UPSTREAM P58IPK
3R	2350925	3R_2350925_DEL [dm3] 3R_6525203_DEL [dm6]	GTG	AA	2.527e^-4	0.686	INTERGENIC
3L	16511054	3L_16511054_SNP [dm3] 3L_16517954_SNP [dm6]	C	G	2.533e^-4	0.686	INTRON CG43373
3L	18070150	3L_18070150_SNP [dm3] 3L_18077050_SNP [dm6]	A	G	2.535e^-4	0.686	UPSTREAM CR45392 INTERGENIC
2L	20477173	2L_20477173_SNP [dm3] 2L_20477173_SNP [dm6]	G	A	2.535e^-4	0.686	INTRON CR44980 EXON CR43234	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4470010	2L_4470010_SNP [dm3] 2L_4470010_SNP [dm6]	T	C	2.540e^-4	0.686	INTRON ine	TF binding site mE1_TFBS_cad
3R	26002145	3R_26002145_SNP [dm3] 3R_30176423_SNP [dm6]	G	A	2.543e^-4	0.686	UTR_3_PRIME CG1983
3L	7853132	3L_7853132_SNP [dm3] 3L_7860032_SNP [dm6]	G	A	2.546e^-4	0.686	INTRON Pdp1
2R	9438485	2R_9438485_INS [dm3] 2R_13550980_INS [dm6]	T	TT	2.548e^-4	0.686	UTR_5_PRIME CG33156 UPSTREAM CG33156 INTRON CG33156
2L	7902481	2L_7902481_SNP [dm3] 2L_7902481_SNP [dm6]	G	C	2.551e^-4	0.686	INTRON Snoo
2R	14990103	2R_14990103_SNP [dm3] 2R_19102598_SNP [dm6]	C	T	2.567e^-4	0.686	INTRON 5-HT1A
X	3927853	X_3927853_SNP [dm3] X_4033820_SNP [dm6]	T	A	2.577e^-4	0.686	INTERGENIC
3R	20647964	3R_20647964_SNP [dm3] 3R_24822242_SNP [dm6]	G	A	2.578e^-4	0.686	UTR_3_PRIME Saf-B DOWNSTREAM niki	TF binding site mE1_TFBS_cad
2L	19838254	2L_19838254_SNP [dm3] 2L_19838254_SNP [dm6]	G	A	2.578e^-4	0.686	INTRON sick
3R	25035088	3R_25035088_INS [dm3] 3R_29209366_INS [dm6]	T	TT	2.585e^-4	0.686	INTERGENIC
2R	9244577	2R_9244577_SNP [dm3] 2R_13357072_SNP [dm6]	C	T	2.588e^-4	0.686	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	6179586	3L_6179586_SNP [dm3] 3L_6186486_SNP [dm6]	C	T	2.590e^-4	0.686	SYNONYMOUS_CODING D19A DOWNSTREAM CG43293	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13994977	2L_13994977_SNP [dm3] 2L_13994977_SNP [dm6]	A	G	2.598e^-4	0.686	INTRON rk
3R	10732773	3R_10732773_INS [dm3] 3R_14907051_INS [dm6]	A	ACTGGCTGAA	2.609e^-4	0.686	INTERGENIC
3R	9190328	3R_9190328_SNP [dm3] 3R_13364606_SNP [dm6]	A	T	2.613e^-4	0.686	UPSTREAM Dic1 & 1 other INTRON poly	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	12160357	3L_12160357_SNP [dm3] 3L_12167257_SNP [dm6]	A	G	2.621e^-4	0.686	SYNONYMOUS_CODING Rh7
3R	18520196	3R_18520196_SNP [dm3] 3R_22694474_SNP [dm6]	A	G	2.627e^-4	0.686	SYNONYMOUS_CODING Nup133 UPSTREAM cd
2L	1232567	2L_1232567_SNP [dm3] 2L_1232567_SNP [dm6]	A	T	2.631e^-4	0.686	INTERGENIC
2L	6658148	2L_6658148_SNP [dm3] 2L_6658148_SNP [dm6]	G	A	2.631e^-4	0.686	UTR_5_PRIME CG31636 UPSTREAM CG11070 & 1 other
3L	3973659	3L_3973659_SNP [dm3] 3L_3973659_SNP [dm6]	C	T	2.638e^-4	0.686	UTR_3_PRIME CG43915	regulatory region REDfly_CRMs
2R	16922903	2R_16922903_SNP [dm3] 2R_21035398_SNP [dm6]	C	T	2.641e^-4	0.686	INTERGENIC
3R	16190405	3R_16190405_SNP [dm3] 3R_20364683_SNP [dm6]	G	A	2.653e^-4	0.686	INTERGENIC
2R	6718707	2R_6718707_DEL [dm3] 2R_10831202_DEL [dm6]	GACAGATAG	G	2.655e^-4	0.686	INTRON CG12344	TF binding site BDTNP1_TFBS_twi
3L	21223868	3L_21223868_SNP [dm3] 3L_21230768_SNP [dm6]	A	C	2.659e^-4	0.686	INTRON Eip78C
3L	6765310	3L_6765310_SNP [dm3] 3L_6772210_SNP [dm6]	G	A	2.665e^-4	0.686	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10013496	3R_10013496_SNP [dm3] 3R_14187774_SNP [dm6]	T	A	2.668e^-4	0.686	INTRON Dop1R1
3L	6176900	3L_6176900_SNP [dm3] 3L_6183800_SNP [dm6]	C	A	2.672e^-4	0.686	SYNONYMOUS_CODING D19B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3R	17176322	3R_17176322_SNP [dm3] 3R_21350600_SNP [dm6]	G	A	2.678e^-4	0.686	UPSTREAM CG16791 DOWNSTREAM mod_mdg4_ INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6339400	2R_6339400_SNP [dm3] 2R_10451895_SNP [dm6]	A	G	2.685e^-4	0.686	INTRON Galphao & 1 other
3L	9488984	3L_9488984_SNP [dm3] 3L_9495884_SNP [dm6]	G	A	2.690e^-4	0.686	INTRON path
3L	9488988	3L_9488988_SNP [dm3] 3L_9495888_SNP [dm6]	C	T	2.690e^-4	0.686	INTRON path
3L	9488992	3L_9488992_SNP [dm3] 3L_9495892_SNP [dm6]	C	A	2.690e^-4	0.686	INTRON path
2R	10332261	2R_10332261_SNP [dm3] 2R_14444756_SNP [dm6]	T	A	2.692e^-4	0.686	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	278036	2R_278036_SNP [dm3] 2R_4390531_SNP [dm6]	G	A	2.695e^-4	0.686	INTRON Gprk1
X	17844996	X_17844996_SNP [dm3] X_17950963_SNP [dm6]	C	T	2.703e^-4	0.686	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14991837	2R_14991837_SNP [dm3] 2R_19104332_SNP [dm6]	C	A	2.706e^-4	0.686	INTRON 5-HT1A
3L	2447060	3L_2447060_SNP [dm3] 3L_2447060_SNP [dm6]	T	C	2.708e^-4	0.686	INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	11185544	3R_11185544_SNP [dm3] 3R_15359822_SNP [dm6]	G	A	2.709e^-4	0.686	SYNONYMOUS_CODING ldlCp DOWNSTREAM CG5044	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16018314	2R_16018314_SNP [dm3] 2R_20130809_SNP [dm6]	A	G	2.716e^-4	0.686	INTERGENIC
X	10088541	X_10088541_SNP [dm3] X_10194508_SNP [dm6]	C	A	2.724e^-4	0.686	UTR_3_PRIME CG43902 INTRON CR44894
X	4858951	X_4858951_DEL [dm3] X_4964918_DEL [dm6]	TT	T	2.724e^-4	0.686	INTRON CR44833
3R	22010355	3R_22010355_SNP [dm3] 3R_26184633_SNP [dm6]	A	C	2.724e^-4	0.686	UTR_3_PRIME CG31323 UPSTREAM CG31086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	1568745	2L_1568745_SNP [dm3] 2L_1568745_SNP [dm6]	A	T	2.724e^-4	0.686	INTRON haf
3R	26001847	3R_26001847_SNP [dm3] 3R_30176125_SNP [dm6]	A	G	2.725e^-4	0.686	UTR_3_PRIME CG1983 DOWNSTREAM CG1983
3L	22110318	3L_22110318_SNP [dm3] 3L_22117218_SNP [dm6]	G	T	2.725e^-4	0.686	INTERGENIC
3L	2122725	3L_2122725_SNP [dm3] 3L_2122725_SNP [dm6]	C	A	2.727e^-4	0.686	UTR_3_PRIME zormin INTRON zormin
X	18476752	X_18476752_SNP [dm3] X_18582719_SNP [dm6]	A	G	2.730e^-4	0.686	INTERGENIC
2R	6168703	2R_6168703_SNP [dm3] 2R_10281198_SNP [dm6]	C	A	2.737e^-4	0.686	SYNONYMOUS_CODING CAP UPSTREAM CAP INTRON CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14961859	3L_14961859_SNP [dm3] 3L_14968759_SNP [dm6]	T	G	2.738e^-4	0.686	UPSTREAM Tom INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	8464741	3L_8464741_SNP [dm3] 3L_8471641_SNP [dm6]	C	T	2.752e^-4	0.686	UTR_3_PRIME Gug
2R	10332173	2R_10332173_SNP [dm3] 2R_14444668_SNP [dm6]	A	G	2.764e^-4	0.686	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	9587155	3L_9587155_SNP [dm3] 3L_9594055_SNP [dm6]	G	A	2.766e^-4	0.686	UTR_3_PRIME CG42673 INTRON CG42673
3L	7278499	3L_7278499_SNP [dm3] 3L_7285399_SNP [dm6]	T	C	2.767e^-4	0.686	INTRON unc-13-4A
3R	23149909	3R_23149909_SNP [dm3] 3R_27324187_SNP [dm6]	G	A	2.770e^-4	0.686	INTERGENIC
2R	8841925	2R_8841925_SNP [dm3] 2R_12954420_SNP [dm6]	A	T	2.771e^-4	0.686	INTRON CG13321	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10332234	2R_10332234_SNP [dm3] 2R_14444729_SNP [dm6]	G	T	2.774e^-4	0.686	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	10421468	3L_10421468_SNP [dm3] 3L_10428368_SNP [dm6]	C	T	2.774e^-4	0.686	INTERGENIC
3L	9518239	3L_9518239_SNP [dm3] 3L_9525139_SNP [dm6]	G	A	2.784e^-4	0.686	INTRON CG33700
3L	12141417	3L_12141417_SNP [dm3] 3L_12148317_SNP [dm6]	A	G	2.792e^-4	0.686	UPSTREAM eap INTRON Nrx-IV
3R	10994301	3R_10994301_DEL [dm3] 3R_15168579_DEL [dm6]	GGGGT	G	2.796e^-4	0.686	INTRON Gyc88E
2R	19109794	2R_19109794_DEL [dm3] 2R_23222271_DEL [dm6]	TGACACACCTT...	T	2.798e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19109845	2R_19109845_SNP [dm3] 2R_23222322_SNP [dm6]	G	A	2.798e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17454740	2R_17454740_SNP [dm3] 2R_21567235_SNP [dm6]	T	C	2.798e^-4	0.686	INTRON CG10440
2L	12586683	2L_12586683_SNP [dm3] 2L_12586683_SNP [dm6]	C	A	2.798e^-4	0.686	UPSTREAM nub INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6460751	2L_6460751_SNP [dm3] 2L_6460751_SNP [dm6]	T	C	2.806e^-4	0.686	INTRON CG16947	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10065214	3L_10065214_INS [dm3] 3L_10072114_INS [dm6]	T	TATGT	2.808e^-4	0.686	DOWNSTREAM dpr6 INTRON dpr6
3L	2337321	3L_2337321_SNP [dm3] 3L_2337321_SNP [dm6]	C	G	2.814e^-4	0.686	INTRON MsR1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	11369140	3L_11369140_SNP [dm3] 3L_11376040_SNP [dm6]	T	A	2.818e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	2773764	2R_2773764_SNP [dm3] 2R_6886259_SNP [dm6]	T	A	2.820e^-4	0.686	UPSTREAM Spn42De INTRON Spn42De
2R	16692512	2R_16692512_SNP [dm3] 2R_20805007_SNP [dm6]	T	C	2.823e^-4	0.686	INTERGENIC
3L	12140577	3L_12140577_SNP [dm3] 3L_12147477_SNP [dm6]	A	T	2.826e^-4	0.686	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2L	7783477	2L_7783477_SNP [dm3] 2L_7783477_SNP [dm6]	T	C	2.827e^-4	0.686	SYNONYMOUS_CODING CG7154 DOWNSTREAM CG7164	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	14548968	X_14548968_SNP [dm3] X_14654935_SNP [dm6]	A	G	2.831e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	6165845	2R_6165845_SNP [dm3] 2R_10278340_SNP [dm6]	G	A	2.833e^-4	0.686	UPSTREAM CAP INTRON CAP	TF binding site BDTNP1_TFBS_dl
3L	6635350	3L_6635350_SNP [dm3] 3L_6642250_SNP [dm6]	G	A	2.835e^-4	0.686	DOWNSTREAM CR45238 EXON CR45239
3R	17972809	3R_17972809_SNP [dm3] 3R_22147087_SNP [dm6]	A	T	2.838e^-4	0.686	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	11427474	2L_11427474_DEL [dm3] 2L_11427474_DEL [dm6]	CC	C	2.843e^-4	0.686	INTERGENIC
2L	12587175	2L_12587175_SNP [dm3] 2L_12587175_SNP [dm6]	C	T	2.844e^-4	0.686	UPSTREAM nub INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12734921	X_12734921_INS [dm3] X_12840888_INS [dm6]	A	AGCCA	2.850e^-4	0.686	INTRON Pde9
X	12734929	X_12734929_SNP [dm3] X_12840896_SNP [dm6]	C	G	2.850e^-4	0.686	INTRON Pde9
2R	14447364	2R_14447364_SNP [dm3] 2R_18559859_SNP [dm6]	G	C	2.851e^-4	0.686	SYNONYMOUS_CODING GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	1340982	X_1340982_SNP [dm3] X_1446949_SNP [dm6]	G	C	2.852e^-4	0.686	NON_SYNONYMOUS_CODING futsch	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18580888	3L_18580888_SNP [dm3] 3L_18587788_SNP [dm6]	C	G	2.856e^-4	0.686	UPSTREAM CG7271 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19261413	2R_19261413_SNP [dm3] 2R_23373890_SNP [dm6]	A	G	2.857e^-4	0.686	SYNONYMOUS_CODING Golgin245	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19256994	2R_19256994_SNP [dm3] 2R_23369471_SNP [dm6]	G	A	2.866e^-4	0.686	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
2R	13223881	2R_13223881_DEL [dm3] 2R_17336376_DEL [dm6]	CTAGCCCTACC...	C	2.868e^-4	0.686	INTRON mbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8044765	3L_8044765_SNP [dm3] 3L_8051665_SNP [dm6]	C	G	2.871e^-4	0.686	UTR_3_PRIME nmo
3L	3731893	3L_3731893_SNP [dm3] 3L_3731893_SNP [dm6]	C	T	2.872e^-4	0.686	INTRON CG32264	TF binding site mE1_TFBS_inv
3R	23151308	3R_23151308_SNP [dm3] 3R_27325586_SNP [dm6]	A	G	2.872e^-4	0.686	INTERGENIC
3R	19918358	3R_19918358_SNP [dm3] 3R_24092636_SNP [dm6]	C	G	2.880e^-4	0.686	INTRON 4EHP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17210230	3R_17210230_SNP [dm3] 3R_21384508_SNP [dm6]	G	A	2.885e^-4	0.686	INTERGENIC	regulatory region REDfly_CRMs
X	5725046	X_5725046_SNP [dm3] X_5831013_SNP [dm6]	A	T	2.885e^-4	0.686	DOWNSTREAM CR43264 INTRON CG15765
X	5725128	X_5725128_SNP [dm3] X_5831095_SNP [dm6]	G	C	2.885e^-4	0.686	DOWNSTREAM CR43264 INTRON CG15765
3L	16980456	3L_16980456_SNP [dm3] 3L_16987356_SNP [dm6]	A	G	2.885e^-4	0.686	INTRON Exn
3R	15764938	3R_15764938_SNP [dm3] 3R_19939216_SNP [dm6]	C	T	2.890e^-4	0.686	INTRON Hs6st
2L	1176691	2L_1176691_SNP [dm3] 2L_1176691_SNP [dm6]	G	A	2.898e^-4	0.686	NON_SYNONYMOUS_CODING CG4887 UPSTREAM CG4896	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7017431	2L_7017431_SNP [dm3] 2L_7017431_SNP [dm6]	A	T	2.904e^-4	0.686	SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo
2L	18906101	2L_18906101_SNP [dm3] 2L_18906101_SNP [dm6]	T	C	2.904e^-4	0.686	UPSTREAM CR44738 INTERGENIC
X	12735062	X_12735062_SNP [dm3] X_12841029_SNP [dm6]	G	A	2.906e^-4	0.686	INTRON Pde9
3R	6687830	3R_6687830_SNP [dm3] 3R_10862108_SNP [dm6]	A	C	2.909e^-4	0.686	INTRON CG6574	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	10767841	3L_10767841_SNP [dm3] 3L_10774741_SNP [dm6]	T	C	2.912e^-4	0.686	INTERGENIC
2L	4926664	2L_4926664_SNP [dm3] 2L_4926664_SNP [dm6]	A	T	2.916e^-4	0.686	INTRON hoe1
3R	12189904	3R_12189904_SNP [dm3] 3R_16364182_SNP [dm6]	A	C	2.921e^-4	0.686	INTRON CG14880
2L	2792783	2L_2792783_SNP [dm3] 2L_2792783_SNP [dm6]	C	T	2.925e^-4	0.686	UTR_3_PRIME Syt1 INTRON Syt1
2L	18903432	2L_18903432_SNP [dm3] 2L_18903432_SNP [dm6]	G	C	2.935e^-4	0.686	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	9334938	3L_9334938_SNP [dm3] 3L_9341838_SNP [dm6]	T	A	2.936e^-4	0.686	INTRON PGRP-LC	TF binding site mE1_TFBS_HSA
3L	10077834	3L_10077834_SNP [dm3] 3L_10084734_SNP [dm6]	T	A	2.937e^-4	0.686	INTRON dpr6
X	1342110	X_1342110_SNP [dm3] X_1448077_SNP [dm6]	G	A	2.943e^-4	0.686	SYNONYMOUS_CODING futsch	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2226320	2R_2226320_SNP [dm3] 2R_6338815_SNP [dm6]	C	A	2.946e^-4	0.686	INTERGENIC	transposable element FlyBase
3R	13564815	3R_13564815_SNP [dm3] 3R_17739093_SNP [dm6]	C	A	2.948e^-4	0.686	UPSTREAM TyrRII INTRON TyrRII
X	18636517	X_18636517_INS [dm3] X_18742484_INS [dm6]	A	ATTGCGA	2.952e^-4	0.686	INTERGENIC
2R	19113248	2R_19113248_SNP [dm3] 2R_23225725_SNP [dm6]	G	A	2.960e^-4	0.686	INTERGENIC
2R	2325126	2R_2325126_SNP [dm3] 2R_6437621_SNP [dm6]	G	T	2.963e^-4	0.686	INTERGENIC
3L	21095095	3L_21095095_SNP [dm3] 3L_21101995_SNP [dm6]	A	G	2.968e^-4	0.686	INTRON ko	regulatory region REDfly_CRMs
2R	9944460	2R_9944460_SNP [dm3] 2R_14056955_SNP [dm6]	A	C	2.968e^-4	0.686	SYNONYMOUS_CODING mam INTRON mam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8550084	X_8550084_SNP [dm3] X_8656051_SNP [dm6]	T	A	2.972e^-4	0.686	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	7156594	3R_7156594_SNP [dm3] 3R_11330872_SNP [dm6]	A	C	2.975e^-4	0.686	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15294008	X_15294008_INS [dm3] X_15399975_INS [dm6]	C	CT	2.977e^-4	0.686	INTRON Cngl
3L	20784129	3L_20784129_SNP [dm3] 3L_20791029_SNP [dm6]	C	A	2.982e^-4	0.686	SYNONYMOUS_CODING Six4
3L	11244293	3L_11244293_SNP [dm3] 3L_11251193_SNP [dm6]	T	A	2.983e^-4	0.686	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	17156963	3L_17156963_SNP [dm3] 3L_17163863_SNP [dm6]	G	C	2.983e^-4	0.686	INTRON Rbp6
3L	9546728	3L_9546728_SNP [dm3] 3L_9553628_SNP [dm6]	T	C	2.986e^-4	0.686	INTRON CG42673
3L	10975359	3L_10975359_SNP [dm3] 3L_10982259_SNP [dm6]	C	G	2.996e^-4	0.686	UTR_3_PRIME klu
2L	1604491	2L_1604491_SNP [dm3] 2L_1604491_SNP [dm6]	G	T	2.997e^-4	0.686	INTRON CG31935 & 1 other
3L	17157746	3L_17157746_SNP [dm3] 3L_17164646_SNP [dm6]	C	G	3.004e^-4	0.686	INTRON Rbp6
X	20358965	X_20358965_SNP [dm3] X_20487938_SNP [dm6]	T	A	3.008e^-4	0.686	INTRON RhoGAP19D
3R	21103935	3R_21103935_SNP [dm3] 3R_25278213_SNP [dm6]	C	T	3.016e^-4	0.686	DOWNSTREAM CG10514 INTERGENIC
2L	11743750	2L_11743750_SNP [dm3] 2L_11743750_SNP [dm6]	A	C	3.017e^-4	0.686	INTRON Vha100-5 EXON CR44144
3R	10445723	3R_10445723_SNP [dm3] 3R_14620001_SNP [dm6]	C	T	3.018e^-4	0.686	UTR_3_PRIME put DOWNSTREAM put	TF binding site mE1_TFBS_kn
3R	6677178	3R_6677178_SNP [dm3] 3R_10851456_SNP [dm6]	T	G	3.018e^-4	0.686	NON_SYNONYMOUS_CODING CG42394	TF binding site BDTNP1_TFBS_dl
2L	2020129	2L_2020129_SNP [dm3] 2L_2020129_SNP [dm6]	A	G	3.019e^-4	0.686	INTRON CG4238
3R	19262866	3R_19262866_SNP [dm3] 3R_23437144_SNP [dm6]	G	A	3.022e^-4	0.686	INTRON CG4374
3R	2879364	3R_2879364_SNP [dm3] 3R_7053642_SNP [dm6]	C	T	3.030e^-4	0.686	UPSTREAM CG1979 INTRON Sodh-1
3R	16730861	3R_16730861_SNP [dm3] 3R_20905139_SNP [dm6]	C	T	3.031e^-4	0.686	NON_SYNONYMOUS_CODING TotX INTRON CG5621
X	11254194	X_11254194_SNP [dm3] X_11360161_SNP [dm6]	C	A	3.032e^-4	0.686	UTR_3_PRIME Pa1 DOWNSTREAM hop
3R	7894099	3R_7894099_SNP [dm3] 3R_12068377_SNP [dm6]	C	T	3.033e^-4	0.686	UTR_3_PRIME CG14741
2R	10332169	2R_10332169_SNP [dm3] 2R_14444664_SNP [dm6]	C	T	3.033e^-4	0.686	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	22558348	3R_22558348_SNP [dm3] 3R_26732626_SNP [dm6]	C	T	3.043e^-4	0.686	INTERGENIC
3R	22556519	3R_22556519_SNP [dm3] 3R_26730797_SNP [dm6]	C	T	3.047e^-4	0.686	DOWNSTREAM CG14246 INTERGENIC
3R	8706189	3R_8706189_SNP [dm3] 3R_12880467_SNP [dm6]	G	A	3.048e^-4	0.686	INTERGENIC
3L	3716263	3L_3716263_SNP [dm3] 3L_3716263_SNP [dm6]	C	T	3.048e^-4	0.686	UTR_3_PRIME CG32264 DOWNSTREAM CG32264
2R	7729216	2R_7729216_SNP [dm3] 2R_11841711_SNP [dm6]	C	A	3.052e^-4	0.686	UTR_5_PRIME CG34229 DOWNSTREAM S2P
2R	3221886	2R_3221886_SNP [dm3] 2R_7334381_SNP [dm6]	A	G	3.060e^-4	0.686	SPLICE_SITE_REGION Dscam1 INTRON Dscam1 & 1 other	TF binding site mE1_TFBS_chinmo
2R	9924063	2R_9924063_SNP [dm3] 2R_14036558_SNP [dm6]	A	G	3.075e^-4	0.686	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	19111038	2R_19111038_DEL [dm3] 2R_23223515_DEL [dm6]	GG	G	3.076e^-4	0.686	INTERGENIC
2R	16243522	2R_16243522_SNP [dm3] 2R_20356017_SNP [dm6]	A	T	3.083e^-4	0.686	UPSTREAM CG11192 INTERGENIC
X	4859137	X_4859137_DEL [dm3] X_4965104_DEL [dm6]	TTTTTTTTTCGGC...	T	3.091e^-4	0.686	INTRON CR44833
2R	14905610	2R_14905610_SNP [dm3] 2R_19018105_SNP [dm6]	C	A	3.093e^-4	0.686	INTERGENIC
2L	7919754	2L_7919754_SNP [dm3] 2L_7919754_SNP [dm6]	A	T	3.094e^-4	0.686	INTRON Snoo
2R	12806773	2R_12806773_DEL [dm3] 2R_16919268_DEL [dm6]	TTGTTGCTG	T	3.096e^-4	0.686	INTERGENIC
2L	4215936	2L_4215936_SNP [dm3] 2L_4215936_SNP [dm6]	G	T	3.098e^-4	0.686	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	19108870	2R_19108870_SNP [dm3] 2R_23221347_SNP [dm6]	T	C	3.101e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25161746	3R_25161746_SNP [dm3] 3R_29336024_SNP [dm6]	C	T	3.102e^-4	0.686	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22556520	3R_22556520_SNP [dm3] 3R_26730798_SNP [dm6]	C	T	3.103e^-4	0.686	DOWNSTREAM CG14246 INTERGENIC
3R	10788044	3R_10788044_SNP [dm3] 3R_14962322_SNP [dm6]	A	C	3.106e^-4	0.686	INTERGENIC
2R	2334604	2R_2334604_SNP [dm3] 2R_6447099_SNP [dm6]	T	C	3.107e^-4	0.686	INTERGENIC
3R	17972821	3R_17972821_SNP [dm3] 3R_22147099_SNP [dm6]	T	C	3.107e^-4	0.686	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
X	10132705	X_10132705_SNP [dm3] X_10238672_SNP [dm6]	T	G	3.107e^-4	0.686	UTR_3_PRIME Hk	TF binding site mE1_TFBS_chinmo
3L	14775296	3L_14775296_SNP [dm3] 3L_14782196_SNP [dm6]	T	G	3.108e^-4	0.686	INTRON bmm	TF binding site BDTNP1_TFBS_dl
3L	12474390	3L_12474390_SNP [dm3] 3L_12481290_SNP [dm6]	C	A	3.108e^-4	0.686	INTRON CG10663
2L	2020085	2L_2020085_SNP [dm3] 2L_2020085_SNP [dm6]	G	C	3.114e^-4	0.686	INTRON CG4238
2R	13671147	2R_13671147_SNP [dm3] 2R_17783642_SNP [dm6]	A	T	3.119e^-4	0.686	DOWNSTREAM mir-31a INTERGENIC
3L	16768392	3L_16768392_SNP [dm3] 3L_16775292_SNP [dm6]	C	T	3.123e^-4	0.686	SYNONYMOUS_CODING Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	12415894	X_12415894_SNP [dm3] X_12521861_SNP [dm6]	A	T	3.124e^-4	0.686	INTRON CG43921	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	20651880	3R_20651880_SNP [dm3] 3R_24826158_SNP [dm6]	A	G	3.125e^-4	0.686	UPSTREAM niki DOWNSTREAM RabX4 INTRON CG43166	transposable element FlyBase
2L	1601843	2L_1601843_SNP [dm3] 2L_1601843_SNP [dm6]	A	G	3.131e^-4	0.686	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_cad
2R	10332198	2R_10332198_SNP [dm3] 2R_14444693_SNP [dm6]	G	T	3.131e^-4	0.686	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	19109732	2R_19109732_SNP [dm3] 2R_23222209_SNP [dm6]	C	T	3.132e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20588902	3L_20588902_SNP [dm3] 3L_20595802_SNP [dm6]	T	G	3.136e^-4	0.686	INTERGENIC
2R	14609238	2R_14609238_SNP [dm3] 2R_18721733_SNP [dm6]	T	A	3.139e^-4	0.686	INTRON Hs3st-A
2L	8169442	2L_8169442_SNP [dm3] 2L_8169442_SNP [dm6]	T	A	3.139e^-4	0.686	INTRON Piezo
3L	6878452	3L_6878452_SNP [dm3] 3L_6885352_SNP [dm6]	C	T	3.144e^-4	0.686	INTERGENIC
3R	9960955	3R_9960955_SNP [dm3] 3R_14135233_SNP [dm6]	A	G	3.146e^-4	0.686	INTERGENIC
3R	15764947	3R_15764947_SNP [dm3] 3R_19939225_SNP [dm6]	C	A	3.147e^-4	0.686	INTRON Hs6st
2L	4981761	2L_4981761_SNP [dm3] 2L_4981761_SNP [dm6]	G	A	3.148e^-4	0.686	UTR_5_PRIME CG34126 UPSTREAM CG8892	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11066203	2L_11066203_SNP [dm3] 2L_11066203_SNP [dm6]	T	A	3.151e^-4	0.686	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	21154115	3L_21154115_DEL [dm3] 3L_21161015_DEL [dm6]	AGCGGAAAATCACATTTAGC...	A	3.156e^-4	0.686	INTRON Ac78C
2R	19022213	2R_19022213_SNP [dm3] 2R_23134690_SNP [dm6]	C	A	3.158e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	4867674	3L_4867674_SNP [dm3] 3L_4867674_SNP [dm6]	A	G	3.163e^-4	0.686	INTRON CG17150
X	17506054	X_17506054_SNP [dm3] X_17612021_SNP [dm6]	A	G	3.174e^-4	0.686	INTERGENIC
3R	22025362	3R_22025362_SNP [dm3] 3R_26199640_SNP [dm6]	T	A	3.177e^-4	0.686	INTRON CR44320
2R	12975699	2R_12975699_SNP [dm3] 2R_17088194_SNP [dm6]	A	T	3.189e^-4	0.686	UPSTREAM CG30460 DOWNSTREAM Sply INTERGENIC
2L	2005089	2L_2005089_SNP [dm3] 2L_2005089_SNP [dm6]	A	C	3.192e^-4	0.686	INTRON CG33543
3R	20240719	3R_20240719_SNP [dm3] 3R_24414997_SNP [dm6]	G	A	3.197e^-4	0.686	INTRON nAChRalpha1
3L	20395346	3L_20395346_DEL [dm3] 3L_20402246_DEL [dm6]	CCATAGTTACGAAATTTTTA...	C	3.198e^-4	0.686	UPSTREAM trbl INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	21845944	3R_21845944_SNP [dm3] 3R_26020222_SNP [dm6]	G	C	3.199e^-4	0.686	UPSTREAM CR43643 DOWNSTREAM CR43644 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17102503	2R_17102503_SNP [dm3] 2R_21214998_SNP [dm6]	G	C	3.207e^-4	0.686	UPSTREAM CG4302 DOWNSTREAM CG15661 INTERGENIC
2L	4036950	2L_4036950_SNP [dm3] 2L_4036950_SNP [dm6]	A	T	3.209e^-4	0.686	INTRON ed
2R	19494104	2R_19494104_SNP [dm3] 2R_23606581_SNP [dm6]	G	A	3.214e^-4	0.686	SYNONYMOUS_CODING CG17662 INTRON CG17664	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6172652	3L_6172652_SNP [dm3] 3L_6179552_SNP [dm6]	G	A	3.223e^-4	0.686	SYNONYMOUS_CODING CG10274 DOWNSTREAM CG7376	TF binding site BDTNP1_TFBS_twi
3L	16267184	3L_16267184_SNP [dm3] 3L_16274084_SNP [dm6]	G	A	3.224e^-4	0.686	DOWNSTREAM CG13066 INTERGENIC
3R	21086792	3R_21086792_SNP [dm3] 3R_25261070_SNP [dm6]	A	C	3.227e^-4	0.686	UTR_3_PRIME CG10425 DOWNSTREAM CG11857
2R	12337985	2R_12337985_SNP [dm3] 2R_16450480_SNP [dm6]	G	T	3.229e^-4	0.686	INTERGENIC
2L	7186192	2L_7186192_SNP [dm3] 2L_7186192_SNP [dm6]	G	A	3.231e^-4	0.686	SYNONYMOUS_CODING CG4496 DOWNSTREAM CG4495	TF binding site mE1_TFBS_HSA
X	14549226	X_14549226_SNP [dm3] X_14655193_SNP [dm6]	G	A	3.249e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8870261	2L_8870261_SNP [dm3] 2L_8870261_SNP [dm6]	T	C	3.253e^-4	0.686	INTERGENIC
3R	11838546	3R_11838546_SNP [dm3] 3R_16012824_SNP [dm6]	G	T	3.260e^-4	0.686	INTRON GATAe	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
2L	919311	2L_919311_SNP [dm3] 2L_919311_SNP [dm6]	C	T	3.261e^-4	0.686	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13802051	2R_13802051_SNP [dm3] 2R_17914546_SNP [dm6]	T	A	3.263e^-4	0.686	INTRON Elk
2R	13802052	2R_13802052_SNP [dm3] 2R_17914547_SNP [dm6]	A	G	3.263e^-4	0.686	INTRON Elk
3L	14775316	3L_14775316_SNP [dm3] 3L_14782216_SNP [dm6]	G	C	3.264e^-4	0.686	INTRON bmm	TF binding site BDTNP1_TFBS_dl
2R	14684671	2R_14684671_SNP [dm3] 2R_18797166_SNP [dm6]	C	T	3.266e^-4	0.686	UTR_3_PRIME l_2_08717 UPSTREAM MFS15 DOWNSTREAM l_2_08717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1341280	X_1341280_SNP [dm3] X_1447247_SNP [dm6]	A	G	3.274e^-4	0.686	SYNONYMOUS_CODING futsch	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17156985	3L_17156985_SNP [dm3] 3L_17163885_SNP [dm6]	G	A	3.275e^-4	0.686	INTRON Rbp6
3L	12299813	3L_12299813_SNP [dm3] 3L_12306713_SNP [dm6]	C	A	3.276e^-4	0.686	INTERGENIC
2L	4470002	2L_4470002_SNP [dm3] 2L_4470002_SNP [dm6]	G	C	3.280e^-4	0.686	INTRON ine	TF binding site mE1_TFBS_cad
3L	8379922	3L_8379922_SNP [dm3] 3L_8386822_SNP [dm6]	T	C	3.290e^-4	0.686	SYNONYMOUS_CODING ImpE1
3R	16730907	3R_16730907_SNP [dm3] 3R_20905185_SNP [dm6]	A	C	3.291e^-4	0.686	NON_SYNONYMOUS_CODING TotX INTRON CG5621
2R	9450261	2R_9450261_SNP [dm3] 2R_13562756_SNP [dm6]	G	A	3.295e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	22760097	3R_22760097_SNP [dm3] 3R_26934375_SNP [dm6]	T	A	3.295e^-4	0.686	INTRON sda
2R	12806754	2R_12806754_SNP [dm3] 2R_16919249_SNP [dm6]	T	G	3.296e^-4	0.686	INTERGENIC
3R	9299152	3R_9299152_SNP [dm3] 3R_13473430_SNP [dm6]	G	T	3.298e^-4	0.686	INTERGENIC
3L	21236717	3L_21236717_SNP [dm3] 3L_21243617_SNP [dm6]	T	C	3.298e^-4	0.686	INTRON Eip78C
2R	13778935	2R_13778935_SNP [dm3] 2R_17891430_SNP [dm6]	A	T	3.300e^-4	0.686	INTRON Elk
3L	17157024	3L_17157024_SNP [dm3] 3L_17163924_SNP [dm6]	T	G	3.301e^-4	0.686	INTRON Rbp6
2L	2792878	2L_2792878_SNP [dm3] 2L_2792878_SNP [dm6]	A	C	3.302e^-4	0.686	UTR_3_PRIME Syt1 INTRON Syt1
3R	25640342	3R_25640342_SNP [dm3] 3R_29814620_SNP [dm6]	T	C	3.303e^-4	0.686	UTR_3_PRIME ca DOWNSTREAM Vps16B
2L	11418619	2L_11418619_SNP [dm3] 2L_11418619_SNP [dm6]	G	A	3.306e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5025441	3R_5025441_SNP [dm3] 3R_9199719_SNP [dm6]	T	A	3.312e^-4	0.686	INTRON pum
3R	26622579	3R_26622579_SNP [dm3] 3R_30796857_SNP [dm6]	G	C	3.312e^-4	0.686	INTRON wts
3L	10092142	3L_10092142_SNP [dm3] 3L_10099042_SNP [dm6]	T	A	3.315e^-4	0.686	UPSTREAM CG42825 DOWNSTREAM CG42826 INTRON dpr6
X	22205835	X_22205835_SNP [dm3] X_22803999_SNP [dm6]	C	A	3.323e^-4	0.686	INTERGENIC
2L	18894405	2L_18894405_SNP [dm3] 2L_18894405_SNP [dm6]	G	C	3.328e^-4	0.686	EXON CR44737	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
2R	12284281	2R_12284281_SNP [dm3] 2R_16396776_SNP [dm6]	G	A	3.330e^-4	0.686	INTRON Sema-2b
3L	7092525	3L_7092525_SNP [dm3] 3L_7099425_SNP [dm6]	A	T	3.342e^-4	0.686	INTRON form3
3L	8644104	3L_8644104_SNP [dm3] 3L_8651004_SNP [dm6]	A	G	3.343e^-4	0.686	UTR_3_PRIME Pex7	TF binding site mE1_TFBS_cad
2R	16089679	2R_16089679_SNP [dm3] 2R_20202174_SNP [dm6]	C	T	3.345e^-4	0.686	INTERGENIC
2L	3832832	2L_3832832_DEL [dm3] 2L_3832832_DEL [dm6]	TT	T	3.356e^-4	0.686	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	1609848	2L_1609848_SNP [dm3] 2L_1609848_SNP [dm6]	T	C	3.358e^-4	0.686	SYNONYMOUS_CODING CG31935	TF binding site mE1_TFBS_cad
3R	20648310	3R_20648310_SNP [dm3] 3R_24822588_SNP [dm6]	G	A	3.358e^-4	0.686	DOWNSTREAM Saf-B INTRON niki	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9854752	2L_9854752_SNP [dm3] 2L_9854752_SNP [dm6]	G	A	3.365e^-4	0.686	INTRON nAChRalpha6
2L	13116362	2L_13116362_SNP [dm3] 2L_13116362_SNP [dm6]	T	A	3.369e^-4	0.686	INTERGENIC
3R	8440216	3R_8440216_SNP [dm3] 3R_12614494_SNP [dm6]	G	T	3.377e^-4	0.686	INTERGENIC
2L	7187676	2L_7187676_SNP [dm3] 2L_7187676_SNP [dm6]	A	T	3.379e^-4	0.686	INTRON CG4496	TF binding site BDTNP1_TFBS_dl
3R	9319169	3R_9319169_SNP [dm3] 3R_13493447_SNP [dm6]	T	C	3.381e^-4	0.686	INTERGENIC
2L	11744242	2L_11744242_SNP [dm3] 2L_11744242_SNP [dm6]	T	C	3.388e^-4	0.686	UTR_3_PRIME Vha100-5 EXON CR44144
2L	11744059	2L_11744059_SNP [dm3] 2L_11744059_SNP [dm6]	C	T	3.397e^-4	0.686	INTRON Vha100-5 EXON CR44144
3L	21236791	3L_21236791_SNP [dm3] 3L_21243691_SNP [dm6]	C	A	3.410e^-4	0.686	INTRON Eip78C
2R	12285145	2R_12285145_SNP [dm3] 2R_16397640_SNP [dm6]	C	G	3.415e^-4	0.686	INTRON Sema-2b
2L	4567296	2L_4567296_SNP [dm3] 2L_4567296_SNP [dm6]	C	T	3.420e^-4	0.686	INTRON dp
2L	14764504	2L_14764504_SNP [dm3] 2L_14764504_SNP [dm6]	C	A	3.423e^-4	0.686	DOWNSTREAM CSN1a INTERGENIC
X	5015007	X_5015007_SNP [dm3] X_5120974_SNP [dm6]	A	G	3.423e^-4	0.686	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	16420099	2R_16420099_SNP [dm3] 2R_20532594_SNP [dm6]	A	T	3.431e^-4	0.686	UPSTREAM CG30154 EXON CR44651
X	17170062	X_17170062_SNP [dm3] X_17276029_SNP [dm6]	G	C	3.432e^-4	0.686	INTRON f
2R	3467512	2R_3467512_SNP [dm3] 2R_7580007_SNP [dm6]	G	A	3.433e^-4	0.686	UPSTREAM CR45130 DOWNSTREAM blow INTRON Vps13
X	1650966	X_1650966_SNP [dm3] X_1756933_SNP [dm6]	A	G	3.433e^-4	0.686	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	20676043	2L_20676043_SNP [dm3] 2L_20676043_SNP [dm6]	C	A	3.445e^-4	0.686	UPSTREAM ik2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15796121	3L_15796121_SNP [dm3] 3L_15803021_SNP [dm6]	C	A	3.452e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12859022	3L_12859022_SNP [dm3] 3L_12865922_SNP [dm6]	C	T	3.452e^-4	0.686	INTERGENIC
3L	11004481	3L_11004481_SNP [dm3] 3L_11011381_SNP [dm6]	C	T	3.453e^-4	0.686	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8841371	2R_8841371_SNP [dm3] 2R_12953866_SNP [dm6]	G	T	3.455e^-4	0.686	INTRON CG13321
3R	10078726	3R_10078726_SNP [dm3] 3R_14253004_SNP [dm6]	T	C	3.458e^-4	0.686	INTRON Aats-met
2R	14447597	2R_14447597_SNP [dm3] 2R_18560092_SNP [dm6]	C	T	3.459e^-4	0.686	NON_SYNONYMOUS_CODING GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5680493	2L_5680493_SNP [dm3] 2L_5680493_SNP [dm6]	A	C	3.460e^-4	0.686	DOWNSTREAM CG12511 INTERGENIC
3L	11419118	3L_11419118_SNP [dm3] 3L_11426018_SNP [dm6]	G	A	3.463e^-4	0.686	NON_SYNONYMOUS_CODING CG7560	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	4194520	2L_4194520_SNP [dm3] 2L_4194520_SNP [dm6]	A	T	3.464e^-4	0.686	INTRON CG3714
3R	14979236	3R_14979236_SNP [dm3] 3R_19153514_SNP [dm6]	T	A	3.465e^-4	0.686	UTR_5_PRIME CG5835 DOWNSTREAM CG11779	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	18903406	2L_18903406_SNP [dm3] 2L_18903406_SNP [dm6]	C	T	3.471e^-4	0.686	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	17197859	3R_17197859_SNP [dm3] 3R_21372137_SNP [dm6]	G	A	3.472e^-4	0.686	DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3L	10711821	3L_10711821_SNP [dm3] 3L_10718721_SNP [dm6]	A	C	3.478e^-4	0.686	INTERGENIC
3L	10683019	3L_10683019_SNP [dm3] 3L_10689919_SNP [dm6]	T	C	3.480e^-4	0.686	UTR_3_PRIME simj DOWNSTREAM simj
3L	2471106	3L_2471106_SNP [dm3] 3L_2471106_SNP [dm6]	T	C	3.481e^-4	0.686	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	2471158	3L_2471158_SNP [dm3] 3L_2471158_SNP [dm6]	T	A	3.481e^-4	0.686	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	24698496	3R_24698496_SNP [dm3] 3R_28872774_SNP [dm6]	C	A	3.483e^-4	0.686	SYNONYMOUS_CODING CG33203 UPSTREAM CG14529	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	8503218	3L_8503218_SNP [dm3] 3L_8510118_SNP [dm6]	A	C	3.485e^-4	0.686	NON_SYNONYMOUS_CODING CG6745 UPSTREAM ZC3H3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9757544	3L_9757544_SNP [dm3] 3L_9764444_SNP [dm6]	T	G	3.490e^-4	0.686	INTRON CG8177	TF binding site mE1_TFBS_HSA
2L	1540226	2L_1540226_DEL [dm3] 2L_1540226_DEL [dm6]	TAT	T	3.492e^-4	0.686	INTERGENIC
2R	10066806	2R_10066806_SNP [dm3] 2R_14179301_SNP [dm6]	T	A	3.494e^-4	0.686	INTRON cg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8860982	2R_8860982_SNP [dm3] 2R_12973477_SNP [dm6]	A	G	3.494e^-4	0.686	INTRON Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12336311	2R_12336311_SNP [dm3] 2R_16448806_SNP [dm6]	C	T	3.503e^-4	0.686	INTERGENIC
X	13055130	X_13055130_SNP [dm3] X_13161097_SNP [dm6]	G	T	3.505e^-4	0.686	NON_SYNONYMOUS_CODING CG12096 DOWNSTREAM CG34411	TF binding site mE1_TFBS_sens
X	1341717	X_1341717_SNP [dm3] X_1447684_SNP [dm6]	G	A	3.509e^-4	0.686	SYNONYMOUS_CODING futsch	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19112134	2R_19112134_SNP [dm3] 2R_23224611_SNP [dm6]	T	A	3.510e^-4	0.686	INTERGENIC
X	9214017	X_9214017_SNP [dm3] X_9319984_SNP [dm6]	A	C	3.520e^-4	0.686	UPSTREAM c12.1 INTRON c12.2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_run
3L	17157743	3L_17157743_SNP [dm3] 3L_17164643_SNP [dm6]	G	C	3.521e^-4	0.686	INTRON Rbp6
3R	10013189	3R_10013189_SNP [dm3] 3R_14187467_SNP [dm6]	T	A	3.522e^-4	0.686	INTRON Dop1R1
3R	20648006	3R_20648006_SNP [dm3] 3R_24822284_SNP [dm6]	A	G	3.526e^-4	0.686	UTR_3_PRIME Saf-B DOWNSTREAM niki	TF binding site mE1_TFBS_cad
2R	12285143	2R_12285143_SNP [dm3] 2R_16397638_SNP [dm6]	G	A	3.526e^-4	0.686	INTRON Sema-2b
3L	2337392	3L_2337392_SNP [dm3] 3L_2337392_SNP [dm6]	A	G	3.530e^-4	0.686	INTRON MsR1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	8006653	3L_8006653_SNP [dm3] 3L_8013553_SNP [dm6]	A	G	3.531e^-4	0.686	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1609590	2L_1609590_SNP [dm3] 2L_1609590_SNP [dm6]	G	T	3.531e^-4	0.686	SYNONYMOUS_CODING CG31935	TF binding site mE1_TFBS_cad
3R	20300799	3R_20300799_SNP [dm3] 3R_24475077_SNP [dm6]	A	T	3.549e^-4	0.686	INTERGENIC
3R	14199101	3R_14199101_SNP [dm3] 3R_18373379_SNP [dm6]	G	A	3.552e^-4	0.686	UPSTREAM gl DOWNSTREAM CG14310 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18119419	3R_18119419_SNP [dm3] 3R_22293697_SNP [dm6]	C	A	3.555e^-4	0.686	SYNONYMOUS_CODING SKIP DOWNSTREAM mir-1010	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20651957	3R_20651957_SNP [dm3] 3R_24826235_SNP [dm6]	T	G	3.556e^-4	0.686	UPSTREAM niki DOWNSTREAM RabX4 INTRON CG43166	transposable element FlyBase
2L	20857113	2L_20857113_SNP [dm3] 2L_20857113_SNP [dm6]	G	A	3.563e^-4	0.686	UTR_3_PRIME twit & 1 other	TF binding site mE1_TFBS_HSA
2R	16803547	2R_16803547_SNP [dm3] 2R_20916042_SNP [dm6]	A	G	3.564e^-4	0.686	UPSTREAM Rx INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2R	10352793	2R_10352793_SNP [dm3] 2R_14465288_SNP [dm6]	G	T	3.564e^-4	0.686	UTR_3_PRIME Oaz	TF binding site mE1_TFBS_cad
2L	4944899	2L_4944899_INS [dm3] 2L_4944899_INS [dm6]	T	TCATTAGGTTT...	3.574e^-4	0.686	UPSTREAM betaggt-I DOWNSTREAM CG14044 INTRON mRpL24	TF binding site mE1_TFBS_Ubx
2R	19114010	2R_19114010_SNP [dm3] 2R_23226487_SNP [dm6]	G	T	3.576e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	539435	2L_539435_SNP [dm3] 2L_539435_SNP [dm6]	C	T	3.576e^-4	0.686	SYNONYMOUS_CODING ush	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	22596763	3R_22596763_SNP [dm3] 3R_26771041_SNP [dm6]	C	A	3.587e^-4	0.686	INTERGENIC
2R	6444809	2R_6444809_SNP [dm3] 2R_10557304_SNP [dm6]	C	G	3.596e^-4	0.686	UPSTREAM psq INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1568902	2L_1568902_SNP [dm3] 2L_1568902_SNP [dm6]	C	T	3.602e^-4	0.686	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4194512	2L_4194512_SNP [dm3] 2L_4194512_SNP [dm6]	A	C	3.611e^-4	0.686	INTRON CG3714
3L	8006594	3L_8006594_SNP [dm3] 3L_8013494_SNP [dm6]	G	A	3.612e^-4	0.686	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	11066579	2L_11066579_SNP [dm3] 2L_11066579_SNP [dm6]	C	T	3.613e^-4	0.686	UTR_5_PRIME Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	10013522	3R_10013522_SNP [dm3] 3R_14187800_SNP [dm6]	A	G	3.614e^-4	0.686	INTRON Dop1R1
3L	4262382	3L_4262382_SNP [dm3] 3L_4262382_SNP [dm6]	A	G	3.619e^-4	0.686	UTR_5_PRIME CG11586 UPSTREAM VhaM9.7-a DOWNSTREAM CG1309	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	12605810	X_12605810_SNP [dm3] X_12711777_SNP [dm6]	G	A	3.620e^-4	0.686	NON_SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10761479	3L_10761479_SNP [dm3] 3L_10768379_SNP [dm6]	G	A	3.625e^-4	0.686	INTERGENIC
3R	17208832	3R_17208832_SNP [dm3] 3R_21383110_SNP [dm6]	A	C	3.628e^-4	0.686	INTERGENIC	regulatory region REDfly_CRMs
2L	19581791	2L_19581791_SNP [dm3] 2L_19581791_SNP [dm6]	A	G	3.634e^-4	0.686	SYNONYMOUS_CODING Hakai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13517985	2L_13517985_SNP [dm3] 2L_13517985_SNP [dm6]	G	A	3.639e^-4	0.686	INTRON B4	TF binding site BDTNP1_TFBS_dl
3R	9348085	3R_9348085_SNP [dm3] 3R_13522363_SNP [dm6]	T	A	3.639e^-4	0.686	DOWNSTREAM CG12538 INTERGENIC
2L	7043986	2L_7043986_SNP [dm3] 2L_7043986_SNP [dm6]	G	A	3.643e^-4	0.686	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	2266228	3R_2266228_SNP [dm3] 3R_6440506_SNP [dm6]	C	T	3.643e^-4	0.686	SYNONYMOUS_CODING gpp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	6460817	2L_6460817_SNP [dm3] 2L_6460817_SNP [dm6]	C	A	3.656e^-4	0.686	INTRON CG16947	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12775770	X_12775770_SNP [dm3] X_12881737_SNP [dm6]	G	A	3.657e^-4	0.686	INTRON Pde9
2R	10223624	2R_10223624_SNP [dm3] 2R_14336119_SNP [dm6]	A	G	3.658e^-4	0.686	INTRON Shroom
2L	1599560	2L_1599560_SNP [dm3] 2L_1599560_SNP [dm6]	G	C	3.662e^-4	0.686	INTRON haf & 1 other
3R	26009609	3R_26009609_SNP [dm3] 3R_30183887_SNP [dm6]	A	T	3.666e^-4	0.686	EXON CR44262
2R	9334383	2R_9334383_SNP [dm3] 2R_13446878_SNP [dm6]	T	G	3.675e^-4	0.686	UPSTREAM CG30062 INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	14776803	2L_14776803_SNP [dm3] 2L_14776803_SNP [dm6]	A	C	3.685e^-4	0.686	INTERGENIC
3R	24111654	3R_24111654_SNP [dm3] 3R_28285932_SNP [dm6]	G	C	3.685e^-4	0.686	INTERGENIC
X	11254193	X_11254193_SNP [dm3] X_11360160_SNP [dm6]	A	G	3.689e^-4	0.686	UTR_3_PRIME Pa1 DOWNSTREAM hop
3R	21288878	3R_21288878_DEL [dm3] 3R_25463156_DEL [dm6]	TTGTTGTTGTT...	T	3.693e^-4	0.686	INTRON Fur1
2L	4471025	2L_4471025_SNP [dm3] 2L_4471025_SNP [dm6]	T	C	3.693e^-4	0.686	SYNONYMOUS_CODING ine
2R	18866549	2R_18866549_SNP [dm3] 2R_22979026_SNP [dm6]	G	T	3.702e^-4	0.686	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17156999	3L_17156999_SNP [dm3] 3L_17163899_SNP [dm6]	A	T	3.704e^-4	0.686	INTRON Rbp6
2R	18620966	2R_18620966_SNP [dm3] 2R_22733461_SNP [dm6]	A	T	3.717e^-4	0.686	INTRON jbug	TF binding site mE1_TFBS_chinmo
3L	11999884	3L_11999884_SNP [dm3] 3L_12006784_SNP [dm6]	C	T	3.717e^-4	0.686	SYNONYMOUS_CODING CG6928
3L	5613200	3L_5613200_SNP [dm3] 3L_5620100_SNP [dm6]	T	A	3.718e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
3R	15819342	3R_15819342_DEL [dm3] 3R_19993620_DEL [dm6]	ACGTTTTGGGAAAG...	A	3.719e^-4	0.686	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19113472	2R_19113472_SNP [dm3] 2R_23225949_SNP [dm6]	G	T	3.722e^-4	0.686	INTERGENIC
2R	19113786	2R_19113786_SNP [dm3] 2R_23226263_SNP [dm6]	T	A	3.722e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19113812	2R_19113812_SNP [dm3] 2R_23226289_SNP [dm6]	G	A	3.722e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7626997	2L_7626997_SNP [dm3] 2L_7626997_SNP [dm6]	A	T	3.724e^-4	0.686	INTERGENIC
2L	4038004	2L_4038004_SNP [dm3] 2L_4038004_SNP [dm6]	A	G	3.728e^-4	0.686	INTRON ed
2L	1569957	2L_1569957_SNP [dm3] 2L_1569957_SNP [dm6]	A	G	3.732e^-4	0.686	INTRON haf
3L	10736561	3L_10736561_SNP [dm3] 3L_10743461_SNP [dm6]	A	G	3.732e^-4	0.686	INTERGENIC

By genomic position
Variant impact
Gene name

W2 Vial 2 ascension (cm) phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results