DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.999e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.05705
In_3R_K	0.03913

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	5.2145	0.0737

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2328 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	2266130	3R_2266130_SNP [dm3] 3R_6440408_SNP [dm6]	T	C	8.330e^-8	0.156	SYNONYMOUS_CODING gpp	TF binding site mE1_TFBS_cad
3R	2266228	3R_2266228_SNP [dm3] 3R_6440506_SNP [dm6]	C	T	3.799e^-7	0.356	SYNONYMOUS_CODING gpp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7585469	3L_7585469_SNP [dm3] 3L_7592369_SNP [dm6]	A	C	1.059e^-6	0.578	UPSTREAM CG33275 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15388601	2L_15388601_SNP [dm3] 2L_15388601_SNP [dm6]	A	T	1.761e^-6	0.578	INTERGENIC
2L	8351480	2L_8351480_SNP [dm3] 2L_8351480_SNP [dm6]	T	C	1.949e^-6	0.578	UPSTREAM Mur29B DOWNSTREAM CG7778 INTERGENIC
3L	1898203	3L_1898203_SNP [dm3] 3L_1898203_SNP [dm6]	G	A	1.961e^-6	0.578	UPSTREAM CG1887 INTRON CG1887
3R	26574481	3R_26574481_SNP [dm3] 3R_30748759_SNP [dm6]	T	C	2.194e^-6	0.578	INTERGENIC
2L	15388600	2L_15388600_SNP [dm3] 2L_15388600_SNP [dm6]	T	C	2.467e^-6	0.578	INTERGENIC
2L	4567296	2L_4567296_SNP [dm3] 2L_4567296_SNP [dm6]	C	T	3.088e^-6	0.591	INTRON dp
3L	11233537	3L_11233537_SNP [dm3] 3L_11240437_SNP [dm6]	T	C	3.154e^-6	0.591	INTERGENIC
X	14263189	X_14263189_SNP [dm3] X_14369156_SNP [dm6]	A	T	4.484e^-6	0.764	INTRON dpr8
3L	11233539	3L_11233539_SNP [dm3] 3L_11240439_SNP [dm6]	A	G	4.918e^-6	0.768	INTERGENIC
3L	17588927	3L_17588927_SNP [dm3] 3L_17595827_SNP [dm6]	A	G	8.528e^-6	0.794	INTRON Eip74EF
2L	7901123	2L_7901123_SNP [dm3] 2L_7901123_SNP [dm6]	C	G	8.915e^-6	0.794	INTRON Snoo
2L	9251474	2L_9251474_SNP [dm3] 2L_9251474_SNP [dm6]	A	T	9.006e^-6	0.794	UTR_3_PRIME borr UPSTREAM aust & 1 other
3L	21152323	3L_21152323_SNP [dm3] 3L_21159223_SNP [dm6]	C	A	1.045e^-5	0.794	INTRON Ac78C	TF binding site mE1_TFBS_inv
3L	2904513	3L_2904513_SNP [dm3] 3L_2904513_SNP [dm6]	T	A	1.101e^-5	0.794	INTRON Shab
2R	9498110	2R_9498110_SNP [dm3] 2R_13610605_SNP [dm6]	C	A	1.157e^-5	0.794	INTERGENIC
2R	9498117	2R_9498117_SNP [dm3] 2R_13610612_SNP [dm6]	C	T	1.157e^-5	0.794	INTERGENIC
2R	11418863	2R_11418863_SNP [dm3] 2R_15531358_SNP [dm6]	G	C	1.208e^-5	0.794	UTR_5_PRIME Khc-73 INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	27010374	3R_27010374_SNP [dm3] 3R_31184652_SNP [dm6]	T	C	1.217e^-5	0.794	SYNONYMOUS_CODING mesh
3R	2495969	3R_2495969_SNP [dm3] 3R_6670247_SNP [dm6]	T	G	1.239e^-5	0.794	INTRON lab	regulatory region FlyBase REDfly_CRMs
2R	9498107	2R_9498107_SNP [dm3] 2R_13610602_SNP [dm6]	T	G	1.243e^-5	0.794	INTERGENIC
2L	15281222	2L_15281222_SNP [dm3] 2L_15281222_SNP [dm6]	A	G	1.251e^-5	0.794	DOWNSTREAM CR45349 INTERGENIC
3R	24267354	3R_24267354_SNP [dm3] 3R_28441632_SNP [dm6]	C	G	1.280e^-5	0.794	INTRON beat-VI
3L	5044337	3L_5044337_DEL [dm3] 3L_5044337_DEL [dm6]	TT	T	1.310e^-5	0.794	INTRON Con
2R	11385484	2R_11385484_SNP [dm3] 2R_15497979_SNP [dm6]	C	G	1.338e^-5	0.794	UPSTREAM CG12964 INTERGENIC
3R	22713569	3R_22713569_SNP [dm3] 3R_26887847_SNP [dm6]	T	C	1.346e^-5	0.794	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14967723	2R_14967723_SNP [dm3] 2R_19080218_SNP [dm6]	G	A	1.486e^-5	0.794	INTRON 5-HT1A
3R	21086869	3R_21086869_SNP [dm3] 3R_25261147_SNP [dm6]	A	T	1.541e^-5	0.794	UTR_3_PRIME CG10425 DOWNSTREAM CG11857
2L	10497668	2L_10497668_SNP [dm3] 2L_10497668_SNP [dm6]	T	C	1.544e^-5	0.794	INTRON Myo31DF
2L	15281202	2L_15281202_DEL [dm3] 2L_15281202_DEL [dm6]	CC	T	1.581e^-5	0.794	DOWNSTREAM CR45349 INTERGENIC
2L	15281172	2L_15281172_SNP [dm3] 2L_15281172_SNP [dm6]	G	A	1.596e^-5	0.794	DOWNSTREAM CR45349 INTERGENIC
3R	21197275	3R_21197275_SNP [dm3] 3R_25371553_SNP [dm6]	G	T	1.634e^-5	0.794	INTRON Fur1
2R	19198653	2R_19198653_SNP [dm3] 2R_23311130_SNP [dm6]	A	T	1.727e^-5	0.794	INTERGENIC
3L	17593846	3L_17593846_SNP [dm3] 3L_17600746_SNP [dm6]	C	T	1.835e^-5	0.794	INTRON Eip74EF
2R	17419139	2R_17419139_SNP [dm3] 2R_21531634_SNP [dm6]	T	A	1.885e^-5	0.794	INTRON Egfr EXON CR44725
3R	23625839	3R_23625839_SNP [dm3] 3R_27800117_SNP [dm6]	G	T	1.941e^-5	0.794	INTRON CG34353
3L	2513633	3L_2513633_SNP [dm3] 3L_2513633_SNP [dm6]	G	T	1.955e^-5	0.794	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15796372	2R_15796372_SNP [dm3] 2R_19908867_SNP [dm6]	C	T	2.017e^-5	0.794	DOWNSTREAM CR44573 INTERGENIC
3L	17582187	3L_17582187_SNP [dm3] 3L_17589087_SNP [dm6]	T	A	2.040e^-5	0.794	INTRON Eip74EF
2R	17419153	2R_17419153_DEL [dm3] 2R_21531648_DEL [dm6]	ATA	A	2.127e^-5	0.794	INTRON Egfr EXON CR44725
2R	9451104	2R_9451104_SNP [dm3] 2R_13563599_SNP [dm6]	C	G	2.131e^-5	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25744754	3R_25744754_SNP [dm3] 3R_29919032_SNP [dm6]	A	G	2.267e^-5	0.794	SPLICE_SITE_REGION trp INTRON trp	TF binding site mE1_TFBS_chinmo
2L	5128873	2L_5128873_SNP [dm3] 2L_5128873_SNP [dm6]	T	C	2.282e^-5	0.794	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	21875957	3R_21875957_SNP [dm3] 3R_26050235_SNP [dm6]	A	T	2.294e^-5	0.794	NON_SYNONYMOUS_CODING Exo84 DOWNSTREAM gro
2R	17539826	2R_17539826_SNP [dm3] 2R_21652321_SNP [dm6]	T	C	2.315e^-5	0.794	UPSTREAM CG30284 INTRON CG10082
2L	6240312	2L_6240312_SNP [dm3] 2L_6240312_SNP [dm6]	A	T	2.317e^-5	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	17740201	3R_17740201_SNP [dm3] 3R_21914479_SNP [dm6]	G	A	2.351e^-5	0.794	NON_SYNONYMOUS_CODING CG17843 DOWNSTREAM CG6690
2L	6240325	2L_6240325_DEL [dm3] 2L_6240325_DEL [dm6]	ACAATA	A	2.424e^-5	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	11410638	2L_11410638_INS [dm3] 2L_11410638_INS [dm6]	A	AA	2.436e^-5	0.794	INTERGENIC	regulatory region REDfly_CRMs
2R	12281986	2R_12281986_SNP [dm3] 2R_16394481_SNP [dm6]	A	T	2.479e^-5	0.794	INTRON Sema-2b
3R	14515675	3R_14515675_SNP [dm3] 3R_18689953_SNP [dm6]	T	C	2.482e^-5	0.794	SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15327699	2R_15327699_SNP [dm3] 2R_19440194_SNP [dm6]	T	C	2.658e^-5	0.794	SPLICE_SITE_REGION Spt5 SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_sens
3R	23234906	3R_23234906_SNP [dm3] 3R_27409184_SNP [dm6]	A	G	2.745e^-5	0.794	INTRON side
X	20431701	X_20431701_SNP [dm3] X_20560674_SNP [dm6]	A	C	2.884e^-5	0.794	INTRON RunxB
3L	2904506	3L_2904506_SNP [dm3] 3L_2904506_SNP [dm6]	A	T	2.951e^-5	0.794	INTRON Shab
3R	24925502	3R_24925502_SNP [dm3] 3R_29099780_SNP [dm6]	C	A	2.981e^-5	0.794	NON_SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20431774	X_20431774_SNP [dm3] X_20560747_SNP [dm6]	T	C	3.014e^-5	0.794	INTRON RunxB
2L	6240301	2L_6240301_INS [dm3] 2L_6240301_INS [dm6]	G	GGAGCCATTTTGAGGCATGA...	3.047e^-5	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	17143883	3R_17143883_SNP [dm3] 3R_21318161_SNP [dm6]	T	A	3.061e^-5	0.794	DOWNSTREAM CG16791 & 1 other INTERGENIC
3L	12946044	3L_12946044_SNP [dm3] 3L_12952944_SNP [dm6]	G	A	3.079e^-5	0.794	NON_SYNONYMOUS_CODING CG10752
2R	19199228	2R_19199228_SNP [dm3] 2R_23311705_SNP [dm6]	C	G	3.080e^-5	0.794	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19199608	2R_19199608_SNP [dm3] 2R_23312085_SNP [dm6]	G	A	3.081e^-5	0.794	DOWNSTREAM HP1Lcsd INTERGENIC	TF binding site mE1_TFBS_inv
2R	14966137	2R_14966137_SNP [dm3] 2R_19078632_SNP [dm6]	G	A	3.161e^-5	0.794	INTRON 5-HT1A
2R	18880362	2R_18880362_SNP [dm3] 2R_22992839_SNP [dm6]	G	A	3.233e^-5	0.794	DOWNSTREAM CG9896 INTRON twi
X	3207004	X_3207004_SNP [dm3] X_3312971_SNP [dm6]	G	A	3.363e^-5	0.794	DOWNSTREAM CR44886 INTRON dnc
2L	621199	2L_621199_SNP [dm3] 2L_621199_SNP [dm6]	C	A	3.770e^-5	0.794	START_GAINED lectin-21Cb UTR_5_PRIME lectin-21Cb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14658920	2R_14658920_SNP [dm3] 2R_18771415_SNP [dm6]	A	T	3.892e^-5	0.794	UPSTREAM Mctp INTRON Mctp
X	5872225	X_5872225_SNP [dm3] X_5978192_SNP [dm6]	T	A	3.932e^-5	0.794	INTRON Grip
2L	15281177	2L_15281177_SNP [dm3] 2L_15281177_SNP [dm6]	T	G	4.038e^-5	0.794	DOWNSTREAM CR45349 INTERGENIC
2R	12804971	2R_12804971_SNP [dm3] 2R_16917466_SNP [dm6]	A	T	4.130e^-5	0.794	INTERGENIC	TF binding site mE1_TFBS_ftz_f1
2R	5590898	2R_5590898_SNP [dm3] 2R_9703393_SNP [dm6]	C	G	4.143e^-5	0.794	UPSTREAM CG30002 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	18636517	X_18636517_INS [dm3] X_18742484_INS [dm6]	A	ATTGCGA	4.160e^-5	0.794	INTERGENIC
2L	14696348	2L_14696348_SNP [dm3] 2L_14696348_SNP [dm6]	A	C	4.208e^-5	0.794	INTERGENIC
2R	16541975	2R_16541975_SNP [dm3] 2R_20654470_SNP [dm6]	C	T	4.235e^-5	0.794	INTRON Lrt & 1 other
2R	14836624	2R_14836624_INS [dm3] 2R_18949119_INS [dm6]	T	TT	4.246e^-5	0.794	INTRON sano
2R	6435388	2R_6435388_SNP [dm3] 2R_10547883_SNP [dm6]	T	A	4.283e^-5	0.794	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	12371580	X_12371580_SNP [dm3] X_12477547_SNP [dm6]	C	G	4.298e^-5	0.794	UTR_3_PRIME CG42258 DOWNSTREAM CG42258
3L	13611747	3L_13611747_SNP [dm3] 3L_13618647_SNP [dm6]	G	C	4.338e^-5	0.794	INTRON bru-3
3L	1585439	3L_1585439_SNP [dm3] 3L_1585439_SNP [dm6]	T	A	4.421e^-5	0.794	INTRON CG13917
2L	15195340	2L_15195340_SNP [dm3] 2L_15195340_SNP [dm6]	T	C	4.508e^-5	0.794	INTRON CG4168
2R	17875679	2R_17875679_SNP [dm3] 2R_21988174_SNP [dm6]	G	T	4.558e^-5	0.794	UTR_3_PRIME CG34370	TF binding site mE1_TFBS_cad
3R	26574483	3R_26574483_SNP [dm3] 3R_30748761_SNP [dm6]	G	A	4.639e^-5	0.794	INTERGENIC
3L	21244565	3L_21244565_SNP [dm3] 3L_21251465_SNP [dm6]	A	T	4.648e^-5	0.794	INTRON Eip78C
X	1201258	X_1201258_SNP [dm3] X_1307225_SNP [dm6]	T	G	4.651e^-5	0.794	INTRON DAAM
2L	19323097	2L_19323097_SNP [dm3] 2L_19323097_SNP [dm6]	T	A	4.759e^-5	0.794	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	21253217	3R_21253217_SNP [dm3] 3R_25427495_SNP [dm6]	A	G	4.898e^-5	0.794	INTRON Fur1
X	13055757	X_13055757_SNP [dm3] X_13161724_SNP [dm6]	G	T	4.958e^-5	0.794	UTR_3_PRIME CG12096 & 1 other DOWNSTREAM CG12096
X	20759542	X_20759542_SNP [dm3] X_20888515_SNP [dm6]	C	A	4.965e^-5	0.794	INTRON shakB
3L	11233518	3L_11233518_INS [dm3] 3L_11240418_INS [dm6]	T	TC	4.984e^-5	0.794	INTERGENIC
2R	19198885	2R_19198885_SNP [dm3] 2R_23311362_SNP [dm6]	G	A	5.012e^-5	0.794	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11745583	2L_11745583_SNP [dm3] 2L_11745583_SNP [dm6]	A	G	5.090e^-5	0.794	INTERGENIC
3L	21338121	3L_21338121_SNP [dm3] 3L_21345021_SNP [dm6]	T	G	5.112e^-5	0.794	UTR_3_PRIME ebd2 INTRON CG32436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21738772	3R_21738772_SNP [dm3] 3R_25913050_SNP [dm6]	G	T	5.199e^-5	0.794	DOWNSTREAM CG42235 INTRON CG42235
3L	12474390	3L_12474390_SNP [dm3] 3L_12481290_SNP [dm6]	C	A	5.222e^-5	0.794	INTRON CG10663
2R	16541977	2R_16541977_SNP [dm3] 2R_20654472_SNP [dm6]	G	T	5.230e^-5	0.794	INTRON Lrt & 1 other
3L	8010476	3L_8010476_SNP [dm3] 3L_8017376_SNP [dm6]	T	A	5.237e^-5	0.794	INTRON nmo
2R	12804957	2R_12804957_DEL [dm3] 2R_16917452_DEL [dm6]	TG	T	5.338e^-5	0.794	INTERGENIC	TF binding site mE1_TFBS_ftz_f1
3R	21086792	3R_21086792_SNP [dm3] 3R_25261070_SNP [dm6]	A	C	5.426e^-5	0.794	UTR_3_PRIME CG10425 DOWNSTREAM CG11857
2R	14406515	2R_14406515_SNP [dm3] 2R_18519010_SNP [dm6]	T	C	5.433e^-5	0.794	INTRON CG43066	TF binding site mE1_TFBS_inv
3L	14144643	3L_14144643_SNP [dm3] 3L_14151543_SNP [dm6]	G	A	5.462e^-5	0.794	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	26588078	3R_26588078_SNP [dm3] 3R_30762356_SNP [dm6]	C	T	5.471e^-5	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	9229809	3R_9229809_SNP [dm3] 3R_13404087_SNP [dm6]	T	A	5.515e^-5	0.794	NON_SYNONYMOUS_CODING yellow-e3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	20588872	3L_20588872_SNP [dm3] 3L_20595772_SNP [dm6]	A	G	5.543e^-5	0.794	INTERGENIC
2L	15195341	2L_15195341_SNP [dm3] 2L_15195341_SNP [dm6]	A	C	5.563e^-5	0.794	INTRON CG4168
2R	11409896	2R_11409896_SNP [dm3] 2R_15522391_SNP [dm6]	T	G	5.593e^-5	0.794	INTRON Khc-73
3R	9869069	3R_9869069_SNP [dm3] 3R_14043347_SNP [dm6]	A	C	5.735e^-5	0.794	INTERGENIC
3L	8989751	3L_8989751_SNP [dm3] 3L_8996651_SNP [dm6]	T	A	5.825e^-5	0.794	UPSTREAM smg INTRON smg	TF binding site BDTNP1_TFBS_dl
3L	17588943	3L_17588943_SNP [dm3] 3L_17595843_SNP [dm6]	G	T	5.908e^-5	0.794	INTRON Eip74EF
3R	2269654	3R_2269654_SNP [dm3] 3R_6443932_SNP [dm6]	C	A	6.072e^-5	0.794	NON_SYNONYMOUS_CODING gpp
3R	21053108	3R_21053108_SNP [dm3] 3R_25227386_SNP [dm6]	A	T	6.081e^-5	0.794	INTRON Cad96Cb
3L	8989753	3L_8989753_SNP [dm3] 3L_8996653_SNP [dm6]	G	T	6.095e^-5	0.794	UPSTREAM smg INTRON smg	TF binding site BDTNP1_TFBS_dl
3L	8982745	3L_8982745_SNP [dm3] 3L_8989645_SNP [dm6]	C	T	6.108e^-5	0.794	SYNONYMOUS_CODING CG5280 DOWNSTREAM CG5068 & 1 other
3L	8887959	3L_8887959_SNP [dm3] 3L_8894859_SNP [dm6]	G	A	6.109e^-5	0.794	SYNONYMOUS_CODING TrpA1 DOWNSTREAM Mcm7
3L	4632323	3L_4632323_SNP [dm3] 3L_4632323_SNP [dm6]	A	G	6.204e^-5	0.794	INTRON axo
2R	7953441	2R_7953441_SNP [dm3] 2R_12065936_SNP [dm6]	C	T	6.309e^-5	0.794	SYNONYMOUS_CODING CG8888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	24668737	3R_24668737_SNP [dm3] 3R_28843015_SNP [dm6]	A	G	6.332e^-5	0.794	UPSTREAM Apc INTRON Apc
X	3207005	X_3207005_SNP [dm3] X_3312972_SNP [dm6]	C	T	6.356e^-5	0.794	DOWNSTREAM CR44886 INTRON dnc
3L	8006541	3L_8006541_SNP [dm3] 3L_8013441_SNP [dm6]	C	A	6.425e^-5	0.794	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	26937590	3R_26937590_SNP [dm3] 3R_31111868_SNP [dm6]	T	C	6.450e^-5	0.794	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8647207	2R_8647207_SNP [dm3] 2R_12759702_SNP [dm6]	T	G	6.511e^-5	0.794	UTR_3_PRIME Dgkepsilon & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7727364	2L_7727364_SNP [dm3] 2L_7727364_SNP [dm6]	A	T	6.643e^-5	0.794	UTR_3_PRIME CG13796
2L	7901429	2L_7901429_SNP [dm3] 2L_7901429_SNP [dm6]	A	G	6.674e^-5	0.794	INTRON Snoo
2R	13536013	2R_13536013_SNP [dm3] 2R_17648508_SNP [dm6]	T	A	6.690e^-5	0.794	INTRON CCHa1-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15202167	3L_15202167_SNP [dm3] 3L_15209067_SNP [dm6]	T	A	6.731e^-5	0.794	DOWNSTREAM CG6888 INTERGENIC
3R	21083424	3R_21083424_SNP [dm3] 3R_25257702_SNP [dm6]	G	A	6.748e^-5	0.794	SYNONYMOUS_CODING Nup358	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13056978	2L_13056978_SNP [dm3] 2L_13056978_SNP [dm6]	A	C	6.809e^-5	0.794	INTRON CG9932
3L	8035944	3L_8035944_SNP [dm3] 3L_8042844_SNP [dm6]	G	T	6.955e^-5	0.794	INTRON nmo
X	16593158	X_16593158_SNP [dm3] X_16699125_SNP [dm6]	T	A	6.996e^-5	0.794	DOWNSTREAM CG9676 INTRON CG4678
X	20364780	X_20364780_SNP [dm3] X_20493753_SNP [dm6]	T	G	7.008e^-5	0.794	INTRON RhoGAP19D
3R	25161746	3R_25161746_SNP [dm3] 3R_29336024_SNP [dm6]	C	T	7.040e^-5	0.794	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	21197210	3R_21197210_SNP [dm3] 3R_25371488_SNP [dm6]	A	G	7.054e^-5	0.794	INTRON Fur1
2R	18368809	2R_18368809_SNP [dm3] 2R_22481304_SNP [dm6]	G	T	7.108e^-5	0.794	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9147938	2L_9147938_SNP [dm3] 2L_9147938_SNP [dm6]	T	G	7.130e^-5	0.794	INTRON CG32982	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	7749241	2R_7749241_SNP [dm3] 2R_11861736_SNP [dm6]	A	G	7.136e^-5	0.794	SYNONYMOUS_CODING CG34230 DOWNSTREAM Mtor & 1 other
3R	19155373	3R_19155373_SNP [dm3] 3R_23329651_SNP [dm6]	A	T	7.182e^-5	0.794	INTRON pnt
2L	7901054	2L_7901054_SNP [dm3] 2L_7901054_SNP [dm6]	C	T	7.312e^-5	0.794	INTRON Snoo
2L	7901431	2L_7901431_SNP [dm3] 2L_7901431_SNP [dm6]	T	A	7.378e^-5	0.794	INTRON Snoo
3R	10104392	3R_10104392_DEL [dm3] 3R_14278670_DEL [dm6]	CC	C	7.392e^-5	0.794	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	14895109	2L_14895109_SNP [dm3] 2L_14895109_SNP [dm6]	A	G	7.392e^-5	0.794	INTERGENIC
X	13054065	X_13054065_SNP [dm3] X_13160032_SNP [dm6]	C	G	7.399e^-5	0.794	NON_SYNONYMOUS_CODING CG12096 UPSTREAM Bap60	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	17972821	3R_17972821_SNP [dm3] 3R_22147099_SNP [dm6]	T	C	7.513e^-5	0.794	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	17972809	3R_17972809_SNP [dm3] 3R_22147087_SNP [dm6]	A	T	7.540e^-5	0.794	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	27009908	3R_27009908_DEL [dm3] 3R_31184186_DEL [dm6]	TGAGGTTGCTTGCC...	T	7.549e^-5	0.794	INTRON mesh
3R	18257710	3R_18257710_SNP [dm3] 3R_22431988_SNP [dm6]	C	A	7.750e^-5	0.794	INTRON CG13847
3R	12741399	3R_12741399_SNP [dm3] 3R_16915677_SNP [dm6]	T	C	7.793e^-5	0.794	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8033135	3L_8033135_SNP [dm3] 3L_8040035_SNP [dm6]	T	A	7.803e^-5	0.794	INTRON nmo
3R	24027089	3R_24027089_SNP [dm3] 3R_28201367_SNP [dm6]	G	T	7.869e^-5	0.794	INTRON CG34354
X	20759541	X_20759541_SNP [dm3] X_20888514_SNP [dm6]	T	A	8.049e^-5	0.794	INTRON shakB
3R	21845944	3R_21845944_SNP [dm3] 3R_26020222_SNP [dm6]	G	C	8.180e^-5	0.794	UPSTREAM CR43643 DOWNSTREAM CR43644 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16541988	2R_16541988_SNP [dm3] 2R_20654483_SNP [dm6]	T	G	8.292e^-5	0.794	INTRON Lrt & 1 other
3R	18257719	3R_18257719_SNP [dm3] 3R_22431997_SNP [dm6]	G	T	8.315e^-5	0.794	INTRON CG13847
2L	18694580	2L_18694580_SNP [dm3] 2L_18694580_SNP [dm6]	A	T	8.351e^-5	0.794	INTRON CG10383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_ttk
3L	5044551	3L_5044551_SNP [dm3] 3L_5044551_SNP [dm6]	C	T	8.351e^-5	0.794	INTRON Con
2L	14702456	2L_14702456_SNP [dm3] 2L_14702456_SNP [dm6]	A	T	8.369e^-5	0.794	INTERGENIC
2R	14387274	2R_14387274_SNP [dm3] 2R_18499769_SNP [dm6]	A	G	8.372e^-5	0.794	INTERGENIC
3L	4154277	3L_4154277_SNP [dm3] 3L_4154277_SNP [dm6]	G	T	8.415e^-5	0.794	INTRON nab
3R	27010338	3R_27010338_SNP [dm3] 3R_31184616_SNP [dm6]	A	G	8.424e^-5	0.794	SYNONYMOUS_CODING mesh
2L	1178728	2L_1178728_SNP [dm3] 2L_1178728_SNP [dm6]	G	T	8.436e^-5	0.794	INTRON CG4896	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20759561	X_20759561_SNP [dm3] X_20888534_SNP [dm6]	T	G	8.457e^-5	0.794	INTRON shakB
3L	12686244	3L_12686244_SNP [dm3] 3L_12693144_SNP [dm6]	G	A	8.464e^-5	0.794	UPSTREAM mirr INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14795174	2R_14795174_SNP [dm3] 2R_18907669_SNP [dm6]	C	G	8.490e^-5	0.794	INTRON sano	TF binding site mE1_TFBS_cad
2R	8614984	2R_8614984_SNP [dm3] 2R_12727479_SNP [dm6]	C	G	8.498e^-5	0.794	INTRON CG42663
2R	5590973	2R_5590973_SNP [dm3] 2R_9703468_SNP [dm6]	T	A	8.541e^-5	0.794	UPSTREAM CG30002 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	26754631	3R_26754631_SNP [dm3] 3R_30928909_SNP [dm6]	A	C	8.545e^-5	0.794	INTRON Ptx1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	9914814	3R_9914814_SNP [dm3] 3R_14089092_SNP [dm6]	C	A	8.600e^-5	0.794	UPSTREAM Npc2b INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	21053052	3R_21053052_SNP [dm3] 3R_25227330_SNP [dm6]	A	T	8.650e^-5	0.794	INTRON Cad96Cb
X	20431783	X_20431783_SNP [dm3] X_20560756_SNP [dm6]	C	T	8.751e^-5	0.794	INTRON RunxB
X	18708432	X_18708432_DEL [dm3] X_18814399_DEL [dm6]	TACT	T	8.798e^-5	0.794	INTRON CG42450	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11409800	2R_11409800_SNP [dm3] 2R_15522295_SNP [dm6]	A	T	8.870e^-5	0.794	INTRON Khc-73
2R	11409809	2R_11409809_INS [dm3] 2R_15522304_INS [dm6]	A	ACAATA	8.870e^-5	0.794	INTRON Khc-73
3R	17972810	3R_17972810_SNP [dm3] 3R_22147088_SNP [dm6]	A	C	8.910e^-5	0.794	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	13030461	2L_13030461_SNP [dm3] 2L_13030461_SNP [dm6]	G	A	9.009e^-5	0.794	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3207337	X_3207337_SNP [dm3] X_3313304_SNP [dm6]	A	T	9.019e^-5	0.794	UPSTREAM dnc DOWNSTREAM CR44886 INTRON dnc
2L	10584500	2L_10584500_SNP [dm3] 2L_10584500_SNP [dm6]	T	A	9.022e^-5	0.794	INTRON Trim9
2L	14894996	2L_14894996_SNP [dm3] 2L_14894996_SNP [dm6]	C	A	9.069e^-5	0.794	INTERGENIC
X	10088541	X_10088541_SNP [dm3] X_10194508_SNP [dm6]	C	A	9.148e^-5	0.794	UTR_3_PRIME CG43902 INTRON CR44894
3L	13221219	3L_13221219_SNP [dm3] 3L_13228119_SNP [dm6]	A	T	9.167e^-5	0.794	UPSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3R	24668741	3R_24668741_SNP [dm3] 3R_28843019_SNP [dm6]	G	C	9.318e^-5	0.794	UPSTREAM Apc INTRON Apc
3R	21061688	3R_21061688_SNP [dm3] 3R_25235966_SNP [dm6]	G	T	9.330e^-5	0.794	UPSTREAM CG10420 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4611688	2L_4611688_SNP [dm3] 2L_4611688_SNP [dm6]	A	G	9.370e^-5	0.794	INTRON dp	TF binding site mE1_TFBS_kn
3L	14109233	3L_14109233_DEL [dm3] 3L_14116133_DEL [dm6]	TT	T	9.381e^-5	0.794	INTRON Sox21b
2L	9149479	2L_9149479_SNP [dm3] 2L_9149479_SNP [dm6]	G	A	9.485e^-5	0.794	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14941444	2R_14941444_SNP [dm3] 2R_19053939_SNP [dm6]	C	T	9.526e^-5	0.794	INTERGENIC
2L	4567443	2L_4567443_SNP [dm3] 2L_4567443_SNP [dm6]	C	T	9.553e^-5	0.794	INTRON dp	TF binding site mE1_TFBS_chinmo
2L	7900587	2L_7900587_DEL [dm3] 2L_7900587_DEL [dm6]	GG	G	9.614e^-5	0.794	INTRON Snoo
2R	9459276	2R_9459276_SNP [dm3] 2R_13571771_SNP [dm6]	A	G	9.666e^-5	0.794	SYNONYMOUS_CODING CG42807	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26519973	3R_26519973_SNP [dm3] 3R_30694251_SNP [dm6]	C	T	9.669e^-5	0.794	SYNONYMOUS_CODING CG12069
2L	5101591	2L_5101591_SNP [dm3] 2L_5101591_SNP [dm6]	C	A	9.729e^-5	0.794	INTRON Msp300
3L	9049592	3L_9049592_INS [dm3] 3L_9056492_INS [dm6]	C	CC	9.790e^-5	0.794	INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	7900233	2L_7900233_SNP [dm3] 2L_7900233_SNP [dm6]	C	T	9.804e^-5	0.794	INTRON Snoo
2R	17226760	2R_17226760_SNP [dm3] 2R_21339255_SNP [dm6]	T	C	9.906e^-5	0.794	SYNONYMOUS_CODING dom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	7901428	2L_7901428_SNP [dm3] 2L_7901428_SNP [dm6]	C	T	9.906e^-5	0.794	INTRON Snoo
3L	6483553	3L_6483553_SNP [dm3] 3L_6490453_SNP [dm6]	C	T	9.924e^-5	0.794	SYNONYMOUS_CODING CG8270 DOWNSTREAM CG10144
3L	3706071	3L_3706071_SNP [dm3] 3L_3706071_SNP [dm6]	T	A	9.994e^-5	0.794	INTERGENIC
3R	21061701	3R_21061701_SNP [dm3] 3R_25235979_SNP [dm6]	A	G	1.003e^-4	0.794	UPSTREAM CG10420 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8614265	2R_8614265_SNP [dm3] 2R_12726760_SNP [dm6]	T	C	1.004e^-4	0.794	INTRON CG42663
3L	4217993	3L_4217993_SNP [dm3] 3L_4217993_SNP [dm6]	T	C	1.004e^-4	0.794	INTRON CG43367
3R	24925380	3R_24925380_SNP [dm3] 3R_29099658_SNP [dm6]	G	A	1.008e^-4	0.794	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14520875	3R_14520875_SNP [dm3] 3R_18695153_SNP [dm6]	A	T	1.010e^-4	0.794	UPSTREAM CG34282 INTERGENIC
2R	16541979	2R_16541979_SNP [dm3] 2R_20654474_SNP [dm6]	T	A	1.012e^-4	0.794	INTRON Lrt & 1 other
3L	2513370	3L_2513370_SNP [dm3] 3L_2513370_SNP [dm6]	G	C	1.018e^-4	0.794	NON_SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23795327	3R_23795327_SNP [dm3] 3R_27969605_SNP [dm6]	A	G	1.023e^-4	0.794	INTRON betaTub97EF	TF binding site mE1_TFBS_cad
3L	3706074	3L_3706074_SNP [dm3] 3L_3706074_SNP [dm6]	G	A	1.032e^-4	0.794	INTERGENIC
2R	14831737	2R_14831737_SNP [dm3] 2R_18944232_SNP [dm6]	G	A	1.033e^-4	0.794	INTRON sano
2R	12281996	2R_12281996_SNP [dm3] 2R_16394491_SNP [dm6]	T	C	1.045e^-4	0.794	INTRON Sema-2b
2L	2486328	2L_2486328_SNP [dm3] 2L_2486328_SNP [dm6]	G	A	1.054e^-4	0.794	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
3R	24657763	3R_24657763_SNP [dm3] 3R_28832041_SNP [dm6]	A	G	1.058e^-4	0.794	UPSTREAM WASp DOWNSTREAM Apc INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	21086787	3R_21086787_SNP [dm3] 3R_25261065_SNP [dm6]	C	T	1.059e^-4	0.794	UTR_3_PRIME CG10425 DOWNSTREAM CG11857
2L	6240373	2L_6240373_SNP [dm3] 2L_6240373_SNP [dm6]	C	G	1.060e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
X	10909007	X_10909007_SNP [dm3] X_11014974_SNP [dm6]	C	T	1.064e^-4	0.794	INTRON CG42339
3L	5030698	3L_5030698_INS [dm3] 3L_5030698_INS [dm6]	T	TTT	1.066e^-4	0.794	INTRON Con
3R	24925447	3R_24925447_SNP [dm3] 3R_29099725_SNP [dm6]	G	T	1.090e^-4	0.794	NON_SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17143885	3R_17143885_DEL [dm3] 3R_21318163_DEL [dm6]	TT	T	1.092e^-4	0.794	DOWNSTREAM CG16791 & 1 other INTERGENIC
3L	9504690	3L_9504690_SNP [dm3] 3L_9511590_SNP [dm6]	T	C	1.093e^-4	0.794	UPSTREAM snoRNA:Me28S-G3253 & 1 other DOWNSTREAM CG33703 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	1898359	3L_1898359_SNP [dm3] 3L_1898359_SNP [dm6]	T	G	1.093e^-4	0.794	UPSTREAM CG1887 INTRON CG1887
2R	13363677	2R_13363677_SNP [dm3] 2R_17476172_SNP [dm6]	G	A	1.095e^-4	0.794	UTR_5_PRIME CG6520 UPSTREAM CG6520	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Trl
X	18708437	X_18708437_SNP [dm3] X_18814404_SNP [dm6]	C	T	1.096e^-4	0.794	INTRON CG42450	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5916449	3L_5916449_SNP [dm3] 3L_5923349_SNP [dm6]	T	G	1.098e^-4	0.794	UPSTREAM Vap-33B INTRON CG32407	TF binding site mE1_TFBS_cad
3R	17143309	3R_17143309_SNP [dm3] 3R_21317587_SNP [dm6]	A	T	1.100e^-4	0.794	DOWNSTREAM mir-4951 & 1 other EXON Hsromega
3R	21061664	3R_21061664_SNP [dm3] 3R_25235942_SNP [dm6]	G	A	1.101e^-4	0.794	UPSTREAM CG10420 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19793489	3R_19793489_SNP [dm3] 3R_23967767_SNP [dm6]	C	T	1.108e^-4	0.794	INTRON CG31140
3R	8830001	3R_8830001_SNP [dm3] 3R_13004279_SNP [dm6]	G	A	1.113e^-4	0.794	SYNONYMOUS_CODING CG7518	TF binding site mE1_TFBS_chinmo
3R	10316473	3R_10316473_DEL [dm3] 3R_14490751_DEL [dm6]	TT	T	1.113e^-4	0.794	INTERGENIC
2R	11227649	2R_11227649_SNP [dm3] 2R_15340144_SNP [dm6]	C	T	1.115e^-4	0.794	UPSTREAM unc-5 DOWNSTREAM Hr51 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_zfh1
2L	15388653	2L_15388653_SNP [dm3] 2L_15388653_SNP [dm6]	C	T	1.117e^-4	0.794	INTERGENIC
3R	18116736	3R_18116736_SNP [dm3] 3R_22291014_SNP [dm6]	T	C	1.120e^-4	0.794	INTRON SKIP
2L	5101806	2L_5101806_SNP [dm3] 2L_5101806_SNP [dm6]	A	G	1.124e^-4	0.794	INTRON Msp300
3R	23687450	3R_23687450_SNP [dm3] 3R_27861728_SNP [dm6]	C	T	1.127e^-4	0.794	INTRON CG34353
3R	12951530	3R_12951530_SNP [dm3] 3R_17125808_SNP [dm6]	A	G	1.128e^-4	0.794	UPSTREAM cher DOWNSTREAM CG17477 INTERGENIC	TF binding site mE1_TFBS_inv
2R	11409925	2R_11409925_SNP [dm3] 2R_15522420_SNP [dm6]	A	G	1.130e^-4	0.794	INTRON Khc-73
2L	12816600	2L_12816600_SNP [dm3] 2L_12816600_SNP [dm6]	G	T	1.134e^-4	0.794	DOWNSTREAM kek1 INTERGENIC
3L	21122249	3L_21122249_SNP [dm3] 3L_21129149_SNP [dm6]	T	A	1.136e^-4	0.794	INTRON ko
2R	9741877	2R_9741877_SNP [dm3] 2R_13854372_SNP [dm6]	A	T	1.136e^-4	0.794	UPSTREAM CR44367 & 1 other DOWNSTREAM CG6553 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	23669794	3R_23669794_SNP [dm3] 3R_27844072_SNP [dm6]	A	G	1.139e^-4	0.794	INTRON CG34353
3R	21689500	3R_21689500_SNP [dm3] 3R_25863778_SNP [dm6]	G	A	1.151e^-4	0.794	INTRON CG5890
3R	2246675	3R_2246675_SNP [dm3] 3R_6420953_SNP [dm6]	T	C	1.154e^-4	0.794	INTRON gpp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	18644580	X_18644580_SNP [dm3] X_18750547_SNP [dm6]	G	A	1.156e^-4	0.794	INTERGENIC
2L	14894804	2L_14894804_SNP [dm3] 2L_14894804_SNP [dm6]	T	C	1.157e^-4	0.794	INTERGENIC
2L	7017394	2L_7017394_SNP [dm3] 2L_7017394_SNP [dm6]	G	A	1.160e^-4	0.794	SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8998227	3L_8998227_SNP [dm3] 3L_9005127_SNP [dm6]	G	A	1.163e^-4	0.794	UPSTREAM Doc3 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6179603	3L_6179603_SNP [dm3] 3L_6186503_SNP [dm6]	G	A	1.170e^-4	0.794	SYNONYMOUS_CODING D19A DOWNSTREAM CG43293	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7727348	2L_7727348_SNP [dm3] 2L_7727348_SNP [dm6]	A	T	1.182e^-4	0.794	UTR_3_PRIME CG13796
2R	16368534	2R_16368534_SNP [dm3] 2R_20481029_SNP [dm6]	T	C	1.188e^-4	0.794	INTERGENIC
3L	12136241	3L_12136241_SNP [dm3] 3L_12143141_SNP [dm6]	C	T	1.190e^-4	0.794	UTR_3_PRIME RhoGAP68F DOWNSTREAM CG5642
X	21049938	X_21049938_SNP [dm3] X_21178911_SNP [dm6]	C	T	1.192e^-4	0.794	INTERGENIC
X	3813741	X_3813741_SNP [dm3] X_3919708_SNP [dm6]	G	C	1.194e^-4	0.794	INTRON CG42541
X	6913434	X_6913434_SNP [dm3] X_7019401_SNP [dm6]	C	G	1.194e^-4	0.794	INTERGENIC
2L	11384068	2L_11384068_SNP [dm3] 2L_11384068_SNP [dm6]	G	A	1.194e^-4	0.794	INTERGENIC	regulatory region REDfly_CRMs
2R	17386903	2R_17386903_SNP [dm3] 2R_21499398_SNP [dm6]	G	A	1.195e^-4	0.794	SYNONYMOUS_CODING TAF1C-like	TF binding site mE1_TFBS_sens
3R	21052884	3R_21052884_SNP [dm3] 3R_25227162_SNP [dm6]	T	C	1.205e^-4	0.794	INTRON Cad96Cb
2L	15388628	2L_15388628_SNP [dm3] 2L_15388628_SNP [dm6]	A	G	1.207e^-4	0.794	INTERGENIC
2L	7900235	2L_7900235_SNP [dm3] 2L_7900235_SNP [dm6]	C	G	1.210e^-4	0.794	INTRON Snoo
3L	3734689	3L_3734689_SNP [dm3] 3L_3734689_SNP [dm6]	C	T	1.224e^-4	0.794	INTRON CG32264
3L	9365866	3L_9365866_SNP [dm3] 3L_9372766_SNP [dm6]	A	G	1.229e^-4	0.794	UTR_5_PRIME Hsp67Bb UPSTREAM Hsp22 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14697331	2L_14697331_SNP [dm3] 2L_14697331_SNP [dm6]	G	T	1.235e^-4	0.794	INTERGENIC
3L	8006594	3L_8006594_SNP [dm3] 3L_8013494_SNP [dm6]	G	A	1.236e^-4	0.794	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	16541966	2R_16541966_INS [dm3] 2R_20654461_INS [dm6]	T	TG	1.238e^-4	0.794	INTRON Lrt & 1 other
2R	16541968	2R_16541968_INS [dm3] 2R_20654463_INS [dm6]	T	TGGAAATCA	1.238e^-4	0.794	INTRON Lrt & 1 other
2L	15331526	2L_15331526_SNP [dm3] 2L_15331526_SNP [dm6]	C	G	1.254e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6931536	2R_6931536_SNP [dm3] 2R_11044031_SNP [dm6]	G	T	1.256e^-4	0.794	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6807952	2R_6807952_DEL [dm3] 2R_10920447_DEL [dm6]	GTATG	A	1.256e^-4	0.794	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15818212	3R_15818212_SNP [dm3] 3R_19992490_SNP [dm6]	T	C	1.257e^-4	0.794	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
X	13054581	X_13054581_SNP [dm3] X_13160548_SNP [dm6]	C	A	1.263e^-4	0.794	NON_SYNONYMOUS_CODING CG12096	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	13046368	2L_13046368_SNP [dm3] 2L_13046368_SNP [dm6]	A	C	1.266e^-4	0.794	INTRON CG9932
2R	6088380	2R_6088380_SNP [dm3] 2R_10200875_SNP [dm6]	C	A	1.266e^-4	0.794	INTERGENIC
2R	6660950	2R_6660950_DEL [dm3] 2R_10773445_DEL [dm6]	CGCTGCCCATCCTCTGCTCC...	C	1.267e^-4	0.794	INTRON CG33144
3L	2842417	3L_2842417_SNP [dm3] 3L_2842417_SNP [dm6]	A	C	1.271e^-4	0.794	INTRON CG43444
3L	8961436	3L_8961436_SNP [dm3] 3L_8968336_SNP [dm6]	A	T	1.274e^-4	0.794	UPSTREAM CG5026 DOWNSTREAM CG5021 INTERGENIC
3R	24926994	3R_24926994_SNP [dm3] 3R_29101272_SNP [dm6]	A	C	1.274e^-4	0.794	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11178822	2R_11178822_SNP [dm3] 2R_15291317_SNP [dm6]	G	A	1.278e^-4	0.794	UPSTREAM Trpm INTRON Trpm
2R	16541986	2R_16541986_SNP [dm3] 2R_20654481_SNP [dm6]	T	C	1.278e^-4	0.794	INTRON Lrt & 1 other
2R	15327679	2R_15327679_SNP [dm3] 2R_19440174_SNP [dm6]	A	T	1.282e^-4	0.794	INTRON Spt5	TF binding site mE1_TFBS_sens
2L	3124104	2L_3124104_SNP [dm3] 2L_3124104_SNP [dm6]	T	C	1.288e^-4	0.794	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_chinmo
2L	9251357	2L_9251357_SNP [dm3] 2L_9251357_SNP [dm6]	C	T	1.294e^-4	0.794	UPSTREAM aust DOWNSTREAM borr EXON CR43734
3R	4713246	3R_4713246_SNP [dm3] 3R_8887524_SNP [dm6]	A	G	1.297e^-4	0.794	INTRON pyd
2R	16541981	2R_16541981_SNP [dm3] 2R_20654476_SNP [dm6]	T	A	1.297e^-4	0.794	INTRON Lrt & 1 other
2R	16541982	2R_16541982_SNP [dm3] 2R_20654477_SNP [dm6]	T	A	1.297e^-4	0.794	INTRON Lrt & 1 other
2L	7727797	2L_7727797_SNP [dm3] 2L_7727797_SNP [dm6]	C	A	1.297e^-4	0.794	INTRON CG13796
2L	13472423	2L_13472423_SNP [dm3] 2L_13472423_SNP [dm6]	A	G	1.309e^-4	0.794	INTRON CG42784
2L	10458834	2L_10458834_SNP [dm3] 2L_10458834_SNP [dm6]	C	T	1.315e^-4	0.794	INTRON LM408	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7900584	2L_7900584_SNP [dm3] 2L_7900584_SNP [dm6]	G	A	1.322e^-4	0.794	INTRON Snoo
2L	2593125	2L_2593125_SNP [dm3] 2L_2593125_SNP [dm6]	G	T	1.329e^-4	0.794	DOWNSTREAM CG15394 INTERGENIC
2L	11755259	2L_11755259_SNP [dm3] 2L_11755259_SNP [dm6]	T	C	1.334e^-4	0.794	UPSTREAM Sfp33A1 INTERGENIC
X	13929687	X_13929687_SNP [dm3] X_14035654_SNP [dm6]	C	T	1.336e^-4	0.794	INTERGENIC
3L	14109883	3L_14109883_SNP [dm3] 3L_14116783_SNP [dm6]	C	T	1.337e^-4	0.794	INTRON Sox21b
3L	1047134	3L_1047134_SNP [dm3] 3L_1047134_SNP [dm6]	G	A	1.341e^-4	0.794	INTRON bab1
2L	14894805	2L_14894805_SNP [dm3] 2L_14894805_SNP [dm6]	T	C	1.342e^-4	0.794	INTERGENIC
2R	14513968	2R_14513968_SNP [dm3] 2R_18626463_SNP [dm6]	C	G	1.366e^-4	0.794	SYNONYMOUS_CODING Sec6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26368259	3R_26368259_SNP [dm3] 3R_30542537_SNP [dm6]	A	G	1.368e^-4	0.794	INTRON tmod
2R	14446661	2R_14446661_SNP [dm3] 2R_18559156_SNP [dm6]	C	T	1.384e^-4	0.794	INTRON GEFmeso	TF binding site mE1_TFBS_chinmo
2R	9929211	2R_9929211_SNP [dm3] 2R_14041706_SNP [dm6]	A	G	1.384e^-4	0.794	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	25846387	3R_25846387_SNP [dm3] 3R_30020665_SNP [dm6]	A	T	1.388e^-4	0.794	INTRON Mgat2	TF binding site BDTNP1_TFBS_dl
3R	2262903	3R_2262903_SNP [dm3] 3R_6437181_SNP [dm6]	C	T	1.389e^-4	0.794	UTR_5_PRIME gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14697330	2L_14697330_SNP [dm3] 2L_14697330_SNP [dm6]	T	C	1.409e^-4	0.794	INTERGENIC
2R	14278298	2R_14278298_SNP [dm3] 2R_18390793_SNP [dm6]	G	T	1.413e^-4	0.794	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
3R	2515309	3R_2515309_SNP [dm3] 3R_6689587_SNP [dm6]	A	T	1.419e^-4	0.794	DOWNSTREAM Ccp84Af INTERGENIC
3R	15191414	3R_15191414_INS [dm3] 3R_19365692_INS [dm6]	A	ATTGTA	1.428e^-4	0.794	INTERGENIC
2L	2192762	2L_2192762_SNP [dm3] 2L_2192762_SNP [dm6]	C	A	1.435e^-4	0.794	UPSTREAM CG10874 INTRON CG34172	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8985826	3L_8985826_SNP [dm3] 3L_8992726_SNP [dm6]	T	C	1.435e^-4	0.794	SYNONYMOUS_CODING smg	TF binding site mE1_TFBS_chinmo
3L	8006653	3L_8006653_SNP [dm3] 3L_8013553_SNP [dm6]	A	G	1.438e^-4	0.794	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14373748	2R_14373748_SNP [dm3] 2R_18486243_SNP [dm6]	C	G	1.442e^-4	0.794	INTRON CG30116
X	2615702	X_2615702_SNP [dm3] X_2721669_SNP [dm6]	G	T	1.460e^-4	0.794	NON_SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	8986615	3L_8986615_SNP [dm3] 3L_8993515_SNP [dm6]	A	G	1.460e^-4	0.794	SYNONYMOUS_CODING smg	TF binding site mE1_TFBS_cad
X	4688202	X_4688202_SNP [dm3] X_4794169_SNP [dm6]	T	C	1.463e^-4	0.794	INTERGENIC
X	20759594	X_20759594_SNP [dm3] X_20888567_SNP [dm6]	G	T	1.464e^-4	0.794	INTRON shakB
2L	3368531	2L_3368531_SNP [dm3] 2L_3368531_SNP [dm6]	A	G	1.465e^-4	0.794	INTRON CG34394
3L	8672398	3L_8672398_SNP [dm3] 3L_8679298_SNP [dm6]	C	T	1.476e^-4	0.794	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs
2L	1950375	2L_1950375_SNP [dm3] 2L_1950375_SNP [dm6]	T	C	1.476e^-4	0.794	UTR_3_PRIME erm
3L	20588877	3L_20588877_SNP [dm3] 3L_20595777_SNP [dm6]	A	C	1.479e^-4	0.794	INTERGENIC
3R	24267352	3R_24267352_SNP [dm3] 3R_28441630_SNP [dm6]	T	G	1.496e^-4	0.794	INTRON beat-VI
3R	9670489	3R_9670489_INS [dm3] 3R_13844767_INS [dm6]	A	AAAAGTGAG	1.497e^-4	0.794	INTERGENIC
2R	11409826	2R_11409826_SNP [dm3] 2R_15522321_SNP [dm6]	T	A	1.498e^-4	0.794	INTRON Khc-73
2R	12775180	2R_12775180_SNP [dm3] 2R_16887675_SNP [dm6]	T	G	1.505e^-4	0.794	INTRON CG8910
3R	14515653	3R_14515653_SNP [dm3] 3R_18689931_SNP [dm6]	C	A	1.508e^-4	0.794	NON_SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4707148	3R_4707148_SNP [dm3] 3R_8881426_SNP [dm6]	G	T	1.509e^-4	0.794	INTRON pyd
2L	4094809	2L_4094809_SNP [dm3] 2L_4094809_SNP [dm6]	A	T	1.512e^-4	0.794	INTRON ed	TF binding site BDTNP1_TFBS_twi
2L	14000830	2L_14000830_SNP [dm3] 2L_14000830_SNP [dm6]	A	G	1.512e^-4	0.794	INTRON rk
3R	24267344	3R_24267344_SNP [dm3] 3R_28441622_SNP [dm6]	A	T	1.512e^-4	0.794	INTRON beat-VI
3L	2513471	3L_2513471_SNP [dm3] 3L_2513471_SNP [dm6]	G	C	1.519e^-4	0.794	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4988906	2L_4988906_SNP [dm3] 2L_4988906_SNP [dm6]	A	T	1.525e^-4	0.794	INTRON CG34126
3R	17142885	3R_17142885_SNP [dm3] 3R_21317163_SNP [dm6]	T	C	1.533e^-4	0.794	DOWNSTREAM mir-4951 EXON Hsromega
2R	14966122	2R_14966122_SNP [dm3] 2R_19078617_SNP [dm6]	G	A	1.543e^-4	0.794	INTRON 5-HT1A
3L	1898360	3L_1898360_SNP [dm3] 3L_1898360_SNP [dm6]	C	T	1.551e^-4	0.794	UPSTREAM CG1887 INTRON CG1887
3R	17517003	3R_17517003_SNP [dm3] 3R_21691281_SNP [dm6]	G	A	1.554e^-4	0.794	INTRON CG31176	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15265475	3L_15265475_SNP [dm3] 3L_15272375_SNP [dm6]	T	A	1.554e^-4	0.794	INTERGENIC
3L	17421901	3L_17421901_DEL [dm3] 3L_17428801_DEL [dm6]	CAAC	C	1.560e^-4	0.794	UTR_5_PRIME CG33052 DOWNSTREAM CG32174 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5107708	2L_5107708_SNP [dm3] 2L_5107708_SNP [dm6]	T	C	1.566e^-4	0.794	UPSTREAM Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	11385230	2R_11385230_SNP [dm3] 2R_15497725_SNP [dm6]	A	T	1.566e^-4	0.794	UPSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	14966150	2R_14966150_SNP [dm3] 2R_19078645_SNP [dm6]	C	T	1.573e^-4	0.794	INTRON 5-HT1A
3L	9332008	3L_9332008_SNP [dm3] 3L_9338908_SNP [dm6]	G	T	1.573e^-4	0.794	DOWNSTREAM PGRP-LA INTRON PGRP-LC
3R	13487755	3R_13487755_SNP [dm3] 3R_17662033_SNP [dm6]	A	G	1.578e^-4	0.794	NON_SYNONYMOUS_CODING CG14322
X	11290771	X_11290771_SNP [dm3] X_11396738_SNP [dm6]	A	T	1.581e^-4	0.794	INTRON dlg1
2R	14999353	2R_14999353_SNP [dm3] 2R_19111848_SNP [dm6]	T	C	1.582e^-4	0.794	INTRON 5-HT1A	TF binding site BDTNP1_TFBS_twi
2L	12886273	2L_12886273_SNP [dm3] 2L_12886273_SNP [dm6]	G	T	1.592e^-4	0.794	INTERGENIC
3R	17143543	3R_17143543_SNP [dm3] 3R_21317821_SNP [dm6]	C	T	1.597e^-4	0.794	DOWNSTREAM mir-4951 & 1 other EXON Hsromega
2R	14278296	2R_14278296_SNP [dm3] 2R_18390791_SNP [dm6]	T	G	1.600e^-4	0.794	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
3L	15152896	3L_15152896_SNP [dm3] 3L_15159796_SNP [dm6]	T	A	1.601e^-4	0.794	INTRON Prp31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14999390	2R_14999390_SNP [dm3] 2R_19111885_SNP [dm6]	T	C	1.606e^-4	0.794	INTRON 5-HT1A	TF binding site BDTNP1_TFBS_twi
X	7967740	X_7967740_SNP [dm3] X_8073707_SNP [dm6]	T	C	1.608e^-4	0.794	SYNONYMOUS_CODING Upf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11383881	2L_11383881_SNP [dm3] 2L_11383881_SNP [dm6]	G	T	1.613e^-4	0.794	INTERGENIC	regulatory region REDfly_CRMs
2R	9309216	2R_9309216_SNP [dm3] 2R_13421711_SNP [dm6]	C	T	1.615e^-4	0.794	SPLICE_SITE_REGION CG42321 INTRON CG42321
2R	18620080	2R_18620080_SNP [dm3] 2R_22732575_SNP [dm6]	C	T	1.619e^-4	0.794	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15870539	X_15870539_SNP [dm3] X_15976506_SNP [dm6]	T	C	1.631e^-4	0.794	SYNONYMOUS_CODING Or13a UPSTREAM CG42766
X	16593045	X_16593045_SNP [dm3] X_16699012_SNP [dm6]	A	C	1.652e^-4	0.794	DOWNSTREAM CG9676 INTRON CG4678
3R	17973005	3R_17973005_SNP [dm3] 3R_22147283_SNP [dm6]	G	C	1.657e^-4	0.794	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	4094175	2L_4094175_SNP [dm3] 2L_4094175_SNP [dm6]	G	A	1.675e^-4	0.794	INTRON ed	TF binding site BDTNP1_TFBS_twi
2R	16026482	2R_16026482_SNP [dm3] 2R_20138977_SNP [dm6]	A	G	1.677e^-4	0.794	DOWNSTREAM CR44636 INTERGENIC
2R	17398574	2R_17398574_SNP [dm3] 2R_21511069_SNP [dm6]	T	C	1.682e^-4	0.794	INTRON MESK2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13676774	2R_13676774_SNP [dm3] 2R_17789269_SNP [dm6]	A	G	1.690e^-4	0.794	UTR_5_PRIME UbcD10 UPSTREAM CG5033 DOWNSTREAM aft	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	13676835	2R_13676835_SNP [dm3] 2R_17789330_SNP [dm6]	G	A	1.690e^-4	0.794	UTR_5_PRIME UbcD10 UPSTREAM CG5033 DOWNSTREAM aft	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	15304667	3R_15304667_SNP [dm3] 3R_19478945_SNP [dm6]	C	T	1.704e^-4	0.794	SYNONYMOUS_CODING Dys	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9438465	2R_9438465_SNP [dm3] 2R_13550960_SNP [dm6]	T	G	1.708e^-4	0.794	UTR_5_PRIME CG33156 UPSTREAM CG33156 INTRON CG33156
3L	21338123	3L_21338123_SNP [dm3] 3L_21345023_SNP [dm6]	G	T	1.714e^-4	0.794	UTR_3_PRIME ebd2 INTRON CG32436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11407925	2L_11407925_SNP [dm3] 2L_11407925_SNP [dm6]	A	T	1.720e^-4	0.794	INTERGENIC	regulatory region REDfly_CRMs
3L	4713901	3L_4713901_SNP [dm3] 3L_4713901_SNP [dm6]	A	C	1.727e^-4	0.794	INTRON RhoGEF64C
2L	10843366	2L_10843366_SNP [dm3] 2L_10843366_SNP [dm6]	A	G	1.728e^-4	0.794	SYNONYMOUS_CODING CG17140 UTR_3_PRIME CG17139 UPSTREAM CG6700	TF binding site BDTNP1_TFBS_dl
2L	8592775	2L_8592775_SNP [dm3] 2L_8592775_SNP [dm6]	A	C	1.728e^-4	0.794	INTRON Sema-1a & 1 other	TF binding site mE1_TFBS_HSA
3R	10954628	3R_10954628_SNP [dm3] 3R_15128906_SNP [dm6]	T	C	1.729e^-4	0.794	INTRON CG42788
3R	26572022	3R_26572022_SNP [dm3] 3R_30746300_SNP [dm6]	A	C	1.732e^-4	0.794	UPSTREAM Npc2h DOWNSTREAM CR43238 INTERGENIC	TF binding site mE1_TFBS_cad
2L	7072803	2L_7072803_SNP [dm3] 2L_7072803_SNP [dm6]	A	T	1.733e^-4	0.794	INTRON Pvf2
2L	4622112	2L_4622112_SNP [dm3] 2L_4622112_SNP [dm6]	C	A	1.734e^-4	0.794	INTERGENIC
2R	20051463	2R_20051463_SNP [dm3] 2R_24163940_SNP [dm6]	G	C	1.734e^-4	0.794	INTRON CG3328	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15163948	2L_15163948_SNP [dm3] 2L_15163948_SNP [dm6]	A	G	1.739e^-4	0.794	INTRON CG4168
2R	12539780	2R_12539780_SNP [dm3] 2R_16652275_SNP [dm6]	G	A	1.743e^-4	0.794	SYNONYMOUS_CODING Amyrel DOWNSTREAM Nach	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	21034285	3R_21034285_SNP [dm3] 3R_25208563_SNP [dm6]	A	G	1.745e^-4	0.794	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	11999308	3R_11999308_SNP [dm3] 3R_16173586_SNP [dm6]	T	C	1.758e^-4	0.794	INTRON CG8925
3L	4636966	3L_4636966_SNP [dm3] 3L_4636966_SNP [dm6]	T	A	1.759e^-4	0.794	UTR_3_PRIME axo INTRON axo
3R	16065812	3R_16065812_SNP [dm3] 3R_20240090_SNP [dm6]	C	T	1.762e^-4	0.794	INTRON Nlg4
2R	17265345	2R_17265345_SNP [dm3] 2R_21377840_SNP [dm6]	T	C	1.765e^-4	0.794	INTRON cv-2
3L	6224210	3L_6224210_SNP [dm3] 3L_6231110_SNP [dm6]	G	A	1.775e^-4	0.794	DOWNSTREAM CG13299 INTERGENIC
X	18168561	X_18168561_SNP [dm3] X_18274528_SNP [dm6]	A	T	1.777e^-4	0.794	INTERGENIC
3R	17517000	3R_17517000_SNP [dm3] 3R_21691278_SNP [dm6]	C	A	1.785e^-4	0.794	INTRON CG31176	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21338120	3L_21338120_SNP [dm3] 3L_21345020_SNP [dm6]	T	A	1.789e^-4	0.794	UTR_3_PRIME ebd2 INTRON CG32436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14942544	2R_14942544_SNP [dm3] 2R_19055039_SNP [dm6]	A	T	1.792e^-4	0.794	DOWNSTREAM CG15116 INTERGENIC
2R	16412433	2R_16412433_SNP [dm3] 2R_20524928_SNP [dm6]	G	A	1.798e^-4	0.794	UPSTREAM CR44650 INTERGENIC
3L	12243598	3L_12243598_SNP [dm3] 3L_12250498_SNP [dm6]	A	C	1.802e^-4	0.794	INTRON app
X	10060271	X_10060271_SNP [dm3] X_10166238_SNP [dm6]	A	G	1.802e^-4	0.794	INTRON CR44894 & 1 other
X	2613464	X_2613464_SNP [dm3] X_2719431_SNP [dm6]	G	A	1.803e^-4	0.794	SYNONYMOUS_CODING CG2701	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2350909	3R_2350909_SNP [dm3] 3R_6525187_SNP [dm6]	A	T	1.806e^-4	0.794	INTERGENIC
X	19879490	X_19879490_SNP [dm3] X_19985457_SNP [dm6]	G	A	1.806e^-4	0.794	INTERGENIC
X	20431516	X_20431516_SNP [dm3] X_20560489_SNP [dm6]	A	G	1.806e^-4	0.794	INTRON RunxB
3R	21738769	3R_21738769_SNP [dm3] 3R_25913047_SNP [dm6]	T	G	1.808e^-4	0.794	DOWNSTREAM CG42235 INTRON CG42235
2R	12806979	2R_12806979_SNP [dm3] 2R_16919474_SNP [dm6]	G	A	1.814e^-4	0.794	INTERGENIC
X	14756019	X_14756019_SNP [dm3] X_14861986_SNP [dm6]	T	A	1.814e^-4	0.794	INTRON Flo2
2R	9806508	2R_9806508_SNP [dm3] 2R_13919003_SNP [dm6]	C	T	1.815e^-4	0.794	INTRON shot	TF binding site mE1_TFBS_Trl
3L	4700408	3L_4700408_SNP [dm3] 3L_4700408_SNP [dm6]	C	T	1.815e^-4	0.794	INTRON RhoGEF64C
2R	9807404	2R_9807404_SNP [dm3] 2R_13919899_SNP [dm6]	T	G	1.828e^-4	0.794	INTRON shot	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	19944972	3R_19944972_SNP [dm3] 3R_24119250_SNP [dm6]	A	T	1.831e^-4	0.794	INTRON Rootletin
2R	17075061	2R_17075061_SNP [dm3] 2R_21187556_SNP [dm6]	G	A	1.839e^-4	0.794	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18484529	3L_18484529_SNP [dm3] 3L_18491429_SNP [dm6]	C	T	1.841e^-4	0.794	INTRON AstC-R2
X	9508220	X_9508220_DEL [dm3] X_9614187_DEL [dm6]	CGATCTTGGGGC...	C	1.854e^-4	0.794	INTRON CG42797
3L	8009956	3L_8009956_SNP [dm3] 3L_8016856_SNP [dm6]	T	A	1.858e^-4	0.794	INTRON nmo
2R	14514757	2R_14514757_SNP [dm3] 2R_18627252_SNP [dm6]	T	C	1.858e^-4	0.794	SYNONYMOUS_CODING Sec6 UPSTREAM Eip55E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	14514745	2R_14514745_SNP [dm3] 2R_18627240_SNP [dm6]	C	T	1.862e^-4	0.794	SYNONYMOUS_CODING Sec6 UPSTREAM Eip55E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	4998127	2L_4998127_SNP [dm3] 2L_4998127_SNP [dm6]	G	C	1.864e^-4	0.794	UPSTREAM Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2R	19228162	2R_19228162_SNP [dm3] 2R_23340639_SNP [dm6]	G	C	1.871e^-4	0.794	INTERGENIC
2R	14447694	2R_14447694_SNP [dm3] 2R_18560189_SNP [dm6]	G	T	1.879e^-4	0.794	SYNONYMOUS_CODING GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8615577	2R_8615577_SNP [dm3] 2R_12728072_SNP [dm6]	C	T	1.881e^-4	0.794	INTRON CG42663
3L	5973068	3L_5973068_SNP [dm3] 3L_5979968_SNP [dm6]	T	C	1.889e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2156615	3L_2156615_SNP [dm3] 3L_2156615_SNP [dm6]	T	G	1.900e^-4	0.794	INTRON CG15822	TF binding site mE1_TFBS_cad
3L	11233197	3L_11233197_SNP [dm3] 3L_11240097_SNP [dm6]	T	A	1.903e^-4	0.794	INTERGENIC
3R	17740272	3R_17740272_SNP [dm3] 3R_21914550_SNP [dm6]	C	T	1.906e^-4	0.794	SYNONYMOUS_CODING CG17843 DOWNSTREAM CG6690
2R	8607456	2R_8607456_SNP [dm3] 2R_12719951_SNP [dm6]	A	G	1.908e^-4	0.794	INTRON CG42663
X	20364785	X_20364785_SNP [dm3] X_20493758_SNP [dm6]	C	T	1.910e^-4	0.794	INTRON RhoGAP19D
3L	8390951	3L_8390951_SNP [dm3] 3L_8397851_SNP [dm6]	G	A	1.911e^-4	0.794	UPSTREAM CG7120 INTRON CG7120
2L	11409364	2L_11409364_INS [dm3] 2L_11409364_INS [dm6]	T	TT	1.917e^-4	0.794	INTERGENIC	regulatory region REDfly_CRMs
2R	10275497	2R_10275497_SNP [dm3] 2R_14387992_SNP [dm6]	C	G	1.920e^-4	0.794	INTERGENIC
3L	8872670	3L_8872670_SNP [dm3] 3L_8879570_SNP [dm6]	G	A	1.922e^-4	0.794	INTRON dally
2L	7250098	2L_7250098_SNP [dm3] 2L_7250098_SNP [dm6]	T	A	1.924e^-4	0.794	UPSTREAM Ndae1 DOWNSTREAM CG13786 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9446728	2R_9446728_SNP [dm3] 2R_13559223_SNP [dm6]	C	T	1.928e^-4	0.794	SYNONYMOUS_CODING CG13334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24165971	3R_24165971_SNP [dm3] 3R_28340249_SNP [dm6]	A	G	1.931e^-4	0.794	UPSTREAM Moca-cyp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21233086	3R_21233086_SNP [dm3] 3R_25407364_SNP [dm6]	A	T	1.931e^-4	0.794	INTRON Fur1
X	15854102	X_15854102_DEL [dm3] X_15960069_DEL [dm6]	TTGGCGGATATGT...	T	1.944e^-4	0.794	INTRON mmd	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13941581	3L_13941581_SNP [dm3] 3L_13948481_SNP [dm6]	G	T	1.944e^-4	0.794	INTRON CG32137
2R	16922892	2R_16922892_SNP [dm3] 2R_21035387_SNP [dm6]	A	G	1.948e^-4	0.794	INTERGENIC
3R	22845446	3R_22845446_SNP [dm3] 3R_27019724_SNP [dm6]	T	C	1.957e^-4	0.794	NON_SYNONYMOUS_CODING CG17191 DOWNSTREAM CG6283 INTRON RYa-R
2L	6968050	2L_6968050_SNP [dm3] 2L_6968050_SNP [dm6]	G	T	1.962e^-4	0.794	UPSTREAM smt3 DOWNSTREAM snRNP-U1-70K INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	21057171	3R_21057171_SNP [dm3] 3R_25231449_SNP [dm6]	G	C	1.965e^-4	0.794	INTRON Cad96Cb
2R	9348276	2R_9348276_SNP [dm3] 2R_13460771_SNP [dm6]	T	G	1.987e^-4	0.794	INTRON arr	TF binding site mE1_TFBS_chinmo
X	10799256	X_10799256_INS [dm3] X_10905223_INS [dm6]	G	GATAGCATATCAAAGAATTG...	1.997e^-4	0.794	UPSTREAM CG43901 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14894747	2L_14894747_SNP [dm3] 2L_14894747_SNP [dm6]	C	T	2.000e^-4	0.794	INTERGENIC
2L	14894555	2L_14894555_SNP [dm3] 2L_14894555_SNP [dm6]	T	C	2.001e^-4	0.794	INTERGENIC
2R	10736058	2R_10736058_SNP [dm3] 2R_14848553_SNP [dm6]	C	T	2.002e^-4	0.794	UPSTREAM CG10209 DOWNSTREAM SMC2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2904547	3L_2904547_SNP [dm3] 3L_2904547_SNP [dm6]	T	C	2.010e^-4	0.794	INTRON Shab
3L	9831212	3L_9831212_SNP [dm3] 3L_9838112_SNP [dm6]	A	G	2.014e^-4	0.794	SYNONYMOUS_CODING Cdk8 DOWNSTREAM RasGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10088565	X_10088565_SNP [dm3] X_10194532_SNP [dm6]	C	G	2.020e^-4	0.794	UTR_3_PRIME CG43902 INTRON CR44894
2L	8837684	2L_8837684_SNP [dm3] 2L_8837684_SNP [dm6]	G	A	2.023e^-4	0.794	INTERGENIC
3R	21689318	3R_21689318_SNP [dm3] 3R_25863596_SNP [dm6]	T	C	2.023e^-4	0.794	INTRON CG5890
3R	25046928	3R_25046928_SNP [dm3] 3R_29221206_SNP [dm6]	C	T	2.029e^-4	0.794	SYNONYMOUS_CODING Ef1gamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25309025	3R_25309025_SNP [dm3] 3R_29483303_SNP [dm6]	A	G	2.029e^-4	0.794	SYNONYMOUS_CODING Ptp99A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9365875	3L_9365875_SNP [dm3] 3L_9372775_SNP [dm6]	G	A	2.030e^-4	0.794	UTR_5_PRIME Hsp67Bb UPSTREAM Hsp22 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18435896	X_18435896_SNP [dm3] X_18541863_SNP [dm6]	G	A	2.034e^-4	0.794	INTRON Bx
2L	4622113	2L_4622113_SNP [dm3] 2L_4622113_SNP [dm6]	G	T	2.037e^-4	0.794	INTERGENIC
2L	4622168	2L_4622168_SNP [dm3] 2L_4622168_SNP [dm6]	G	A	2.037e^-4	0.794	INTERGENIC
3R	17740030	3R_17740030_SNP [dm3] 3R_21914308_SNP [dm6]	T	A	2.041e^-4	0.794	NON_SYNONYMOUS_CODING CG17843 DOWNSTREAM CG6690
2R	14452392	2R_14452392_SNP [dm3] 2R_18564887_SNP [dm6]	G	A	2.043e^-4	0.794	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10357598	2L_10357598_SNP [dm3] 2L_10357598_SNP [dm6]	C	G	2.045e^-4	0.794	NON_SYNONYMOUS_CODING CG5045 DOWNSTREAM Cand1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	14373328	3L_14373328_SNP [dm3] 3L_14380228_SNP [dm6]	T	C	2.046e^-4	0.794	INTERGENIC
2L	10095286	2L_10095286_SNP [dm3] 2L_10095286_SNP [dm6]	C	T	2.046e^-4	0.794	INTRON CG44153 & 1 other
2L	11223220	2L_11223220_SNP [dm3] 2L_11223220_SNP [dm6]	C	G	2.047e^-4	0.794	INTRON ab
2R	6088366	2R_6088366_SNP [dm3] 2R_10200861_SNP [dm6]	G	A	2.047e^-4	0.794	INTERGENIC
2R	6088367	2R_6088367_SNP [dm3] 2R_10200862_SNP [dm6]	C	G	2.047e^-4	0.794	INTERGENIC
3L	9451702	3L_9451702_SNP [dm3] 3L_9458602_SNP [dm6]	T	A	2.051e^-4	0.794	SYNONYMOUS_CODING CG3552 UPSTREAM CG3437 DOWNSTREAM CG3434	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	5221814	3L_5221814_SNP [dm3] 3L_5228714_SNP [dm6]	A	G	2.054e^-4	0.794	INTRON shep
2R	15397980	2R_15397980_SNP [dm3] 2R_19510475_SNP [dm6]	A	G	2.059e^-4	0.794	SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56b
3R	17846212	3R_17846212_SNP [dm3] 3R_22020490_SNP [dm6]	G	A	2.070e^-4	0.794	SYNONYMOUS_CODING CG6455	TF binding site mE1_TFBS_HSA
X	16593009	X_16593009_SNP [dm3] X_16698976_SNP [dm6]	A	T	2.070e^-4	0.794	DOWNSTREAM CG9676 INTRON CG4678
3R	9914723	3R_9914723_SNP [dm3] 3R_14089001_SNP [dm6]	C	T	2.078e^-4	0.794	UPSTREAM Npc2b INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	14755952	X_14755952_SNP [dm3] X_14861919_SNP [dm6]	G	C	2.089e^-4	0.794	INTRON Flo2
2R	9438470	2R_9438470_SNP [dm3] 2R_13550965_SNP [dm6]	T	G	2.097e^-4	0.794	UTR_5_PRIME CG33156 UPSTREAM CG33156 INTRON CG33156
3L	9004910	3L_9004910_SNP [dm3] 3L_9011810_SNP [dm6]	G	A	2.098e^-4	0.794	DOWNSTREAM Doc2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
2L	14114908	2L_14114908_SNP [dm3] 2L_14114908_SNP [dm6]	C	T	2.098e^-4	0.794	INTERGENIC
2R	9198485	2R_9198485_SNP [dm3] 2R_13310980_SNP [dm6]	A	T	2.104e^-4	0.794	INTERGENIC
3R	26520000	3R_26520000_SNP [dm3] 3R_30694278_SNP [dm6]	G	A	2.106e^-4	0.794	SYNONYMOUS_CODING CG12069
X	10798960	X_10798960_SNP [dm3] X_10904927_SNP [dm6]	G	A	2.107e^-4	0.794	UPSTREAM CG43901 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20431808	X_20431808_DEL [dm3] X_20560781_DEL [dm6]	TAT	T	2.111e^-4	0.794	INTRON RunxB
3L	8887700	3L_8887700_SNP [dm3] 3L_8894600_SNP [dm6]	T	A	2.121e^-4	0.794	UTR_3_PRIME TrpA1 DOWNSTREAM Mcm7
3L	8921089	3L_8921089_SNP [dm3] 3L_8927989_SNP [dm6]	C	T	2.121e^-4	0.794	INTRON Tsp66E
3L	3049887	3L_3049887_SNP [dm3] 3L_3049887_SNP [dm6]	G	A	2.122e^-4	0.794	UTR_3_PRIME Sk2 UPSTREAM CG32485	TF binding site mE1_TFBS_cad
2L	10458833	2L_10458833_SNP [dm3] 2L_10458833_SNP [dm6]	G	T	2.130e^-4	0.794	INTRON LM408	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	21335173	3L_21335173_SNP [dm3] 3L_21342073_SNP [dm6]	A	G	2.137e^-4	0.794	SYNONYMOUS_CODING CG7324
2L	9639048	2L_9639048_SNP [dm3] 2L_9639048_SNP [dm6]	G	T	2.139e^-4	0.794	INTRON Apoltp
2R	15292298	2R_15292298_SNP [dm3] 2R_19404793_SNP [dm6]	C	T	2.139e^-4	0.794	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25310758	3R_25310758_SNP [dm3] 3R_29485036_SNP [dm6]	T	C	2.149e^-4	0.794	UTR_3_PRIME Ptp99A & 1 other DOWNSTREAM Ptp99A
3L	8990357	3L_8990357_SNP [dm3] 3L_8997257_SNP [dm6]	C	T	2.151e^-4	0.794	UPSTREAM smg & 1 other INTRON smg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
X	11147681	X_11147681_SNP [dm3] X_11253648_SNP [dm6]	C	T	2.152e^-4	0.794	INTRON CG44422
3L	18112600	3L_18112600_SNP [dm3] 3L_18119500_SNP [dm6]	C	T	2.160e^-4	0.794	DOWNSTREAM CG32195 INTRON CG7341	TF binding site mE1_TFBS_cad
3R	25754683	3R_25754683_SNP [dm3] 3R_29928961_SNP [dm6]	C	T	2.160e^-4	0.794	NON_SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522
2L	11745585	2L_11745585_SNP [dm3] 2L_11745585_SNP [dm6]	A	G	2.163e^-4	0.794	INTERGENIC
X	14755979	X_14755979_SNP [dm3] X_14861946_SNP [dm6]	G	C	2.164e^-4	0.794	INTRON Flo2
X	14755982	X_14755982_SNP [dm3] X_14861949_SNP [dm6]	T	C	2.164e^-4	0.794	INTRON Flo2
3L	8921075	3L_8921075_SNP [dm3] 3L_8927975_SNP [dm6]	G	A	2.164e^-4	0.794	INTRON Tsp66E
3L	8951409	3L_8951409_SNP [dm3] 3L_8958309_SNP [dm6]	C	A	2.168e^-4	0.794	UPSTREAM CG13313 DOWNSTREAM mRpL12 INTERGENIC
3R	21244230	3R_21244230_SNP [dm3] 3R_25418508_SNP [dm6]	T	A	2.170e^-4	0.794	INTRON Fur1
3L	10303393	3L_10303393_SNP [dm3] 3L_10310293_SNP [dm6]	G	C	2.174e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20431888	X_20431888_SNP [dm3] X_20560861_SNP [dm6]	C	A	2.174e^-4	0.794	INTRON RunxB
3R	21833714	3R_21833714_SNP [dm3] 3R_26007992_SNP [dm6]	A	G	2.175e^-4	0.794	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18169070	X_18169070_SNP [dm3] X_18275037_SNP [dm6]	T	C	2.179e^-4	0.794	INTERGENIC
2R	14907200	2R_14907200_SNP [dm3] 2R_19019695_SNP [dm6]	C	A	2.180e^-4	0.794	INTERGENIC
2R	12341822	2R_12341822_SNP [dm3] 2R_16454317_SNP [dm6]	C	T	2.188e^-4	0.794	INTERGENIC
3R	17740245	3R_17740245_SNP [dm3] 3R_21914523_SNP [dm6]	C	G	2.188e^-4	0.794	SYNONYMOUS_CODING CG17843 DOWNSTREAM CG6690
X	16940855	X_16940855_SNP [dm3] X_17046822_SNP [dm6]	A	T	2.192e^-4	0.794	INTRON CG45002
2R	14192809	2R_14192809_SNP [dm3] 2R_18305304_SNP [dm6]	C	T	2.202e^-4	0.794	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	12802213	2R_12802213_SNP [dm3] 2R_16914708_SNP [dm6]	G	C	2.206e^-4	0.794	INTERGENIC
3L	8874652	3L_8874652_SNP [dm3] 3L_8881552_SNP [dm6]	T	G	2.209e^-4	0.794	INTRON dally
X	14755962	X_14755962_SNP [dm3] X_14861929_SNP [dm6]	A	G	2.226e^-4	0.794	INTRON Flo2
2L	13083770	2L_13083770_SNP [dm3] 2L_13083770_SNP [dm6]	C	T	2.233e^-4	0.794	INTERGENIC
3R	25754645	3R_25754645_SNP [dm3] 3R_29928923_SNP [dm6]	A	G	2.234e^-4	0.794	SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522
X	3639084	X_3639084_DEL [dm3] X_3745051_DEL [dm6]	TTT	T	2.240e^-4	0.794	INTRON tlk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	13178070	3R_13178070_SNP [dm3] 3R_17352348_SNP [dm6]	C	A	2.241e^-4	0.794	INTRON beat-IIa
3L	2842394	3L_2842394_DEL [dm3] 3L_2842394_DEL [dm6]	GG	G	2.242e^-4	0.794	INTRON CG43444
2R	408085	2R_408085_DEL [dm3] 2R_4520580_DEL [dm6]	CGTCCCTTTATGGGCC...	C	2.254e^-4	0.794	INTERGENIC	transposable element FlyBase
3L	9881965	3L_9881965_SNP [dm3] 3L_9888865_SNP [dm6]	A	T	2.255e^-4	0.794	START_GAINED CalpB UTR_5_PRIME CalpB UPSTREAM CalpB & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10073130	2L_10073130_INS [dm3] 2L_10073130_INS [dm6]	C	TG	2.263e^-4	0.794	INTRON CG44153	TF binding site mE1_TFBS_inv
X	18436417	X_18436417_SNP [dm3] X_18542384_SNP [dm6]	A	G	2.264e^-4	0.794	INTRON Bx
X	5961781	X_5961781_SNP [dm3] X_6067748_SNP [dm6]	A	T	2.267e^-4	0.794	UPSTREAM CG5928 INTERGENIC
3L	12859033	3L_12859033_SNP [dm3] 3L_12865933_SNP [dm6]	A	C	2.278e^-4	0.794	INTERGENIC
3R	24284716	3R_24284716_SNP [dm3] 3R_28458994_SNP [dm6]	A	G	2.283e^-4	0.794	INTRON beat-VI
3R	9869073	3R_9869073_SNP [dm3] 3R_14043351_SNP [dm6]	T	A	2.287e^-4	0.794	INTERGENIC
2R	16527699	2R_16527699_SNP [dm3] 2R_20640194_SNP [dm6]	G	A	2.287e^-4	0.794	SYNONYMOUS_CODING rig UPSTREAM maf-S	TF binding site BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12933323	3R_12933323_SNP [dm3] 3R_17107601_SNP [dm6]	A	G	2.301e^-4	0.794	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9419570	X_9419570_SNP [dm3] X_9525537_SNP [dm6]	C	A	2.301e^-4	0.794	INTRON CG32700
3R	2350925	3R_2350925_DEL [dm3] 3R_6525203_DEL [dm6]	GTG	AA	2.322e^-4	0.794	INTERGENIC
3L	7632937	3L_7632937_DEL [dm3] 3L_7639837_DEL [dm6]	GG	G	2.324e^-4	0.794	UTR_3_PRIME CG33276 DOWNSTREAM CG33275 & 2 others
2R	18036897	2R_18036897_SNP [dm3] 2R_22149392_SNP [dm6]	C	T	2.331e^-4	0.794	INTRON a
3R	25754562	3R_25754562_SNP [dm3] 3R_29928840_SNP [dm6]	A	G	2.333e^-4	0.794	NON_SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522	TF binding site mE1_TFBS_chinmo
3R	25284971	3R_25284971_SNP [dm3] 3R_29459249_SNP [dm6]	A	T	2.343e^-4	0.794	INTRON Ptp99A EXON CR44022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	21966323	3R_21966323_SNP [dm3] 3R_26140601_SNP [dm6]	T	G	2.348e^-4	0.794	INTERGENIC
X	5961793	X_5961793_INS [dm3] X_6067760_INS [dm6]	G	GTT	2.351e^-4	0.794	UPSTREAM CG5928 INTERGENIC
2R	13676984	2R_13676984_SNP [dm3] 2R_17789479_SNP [dm6]	A	G	2.352e^-4	0.794	UPSTREAM CG5033 & 1 other DOWNSTREAM aft INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	8513130	2R_8513130_SNP [dm3] 2R_12625625_SNP [dm6]	G	T	2.359e^-4	0.794	UPSTREAM CG17760 DOWNSTREAM CG30054 INTERGENIC
2R	16541941	2R_16541941_SNP [dm3] 2R_20654436_SNP [dm6]	T	A	2.363e^-4	0.794	INTRON Lrt & 1 other
3L	12968155	3L_12968155_SNP [dm3] 3L_12975055_SNP [dm6]	T	A	2.365e^-4	0.794	INTERGENIC
2L	15819870	2L_15819870_SNP [dm3] 2L_15819870_SNP [dm6]	A	T	2.373e^-4	0.794	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	3967463	2L_3967463_DEL [dm3] 2L_3967463_DEL [dm6]	AA	A	2.376e^-4	0.794	INTRON fred
3R	17143919	3R_17143919_SNP [dm3] 3R_21318197_SNP [dm6]	G	A	2.378e^-4	0.794	DOWNSTREAM CG16791 & 1 other INTERGENIC
2L	2544999	2L_2544999_SNP [dm3] 2L_2544999_SNP [dm6]	G	A	2.383e^-4	0.794	INTERGENIC
2R	7561706	2R_7561706_SNP [dm3] 2R_11674201_SNP [dm6]	C	T	2.393e^-4	0.794	INTRON Roc2 & 1 other
3L	5045139	3L_5045139_SNP [dm3] 3L_5045139_SNP [dm6]	C	A	2.404e^-4	0.794	INTRON Con
2L	18693035	2L_18693035_SNP [dm3] 2L_18693035_SNP [dm6]	G	T	2.416e^-4	0.794	SYNONYMOUS_CODING CG10383	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17419134	2R_17419134_SNP [dm3] 2R_21531629_SNP [dm6]	A	C	2.419e^-4	0.794	INTRON Egfr EXON CR44725
3R	24229076	3R_24229076_SNP [dm3] 3R_28403354_SNP [dm6]	A	G	2.431e^-4	0.794	INTERGENIC
3R	24924286	3R_24924286_SNP [dm3] 3R_29098564_SNP [dm6]	G	A	2.435e^-4	0.794	NON_SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2983095	2L_2983095_SNP [dm3] 2L_2983095_SNP [dm6]	G	A	2.436e^-4	0.794	SYNONYMOUS_CODING Chd1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9881954	3L_9881954_DEL [dm3] 3L_9888854_DEL [dm6]	AT	A	2.452e^-4	0.794	UTR_5_PRIME CalpB UPSTREAM CalpB & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9881958	3L_9881958_SNP [dm3] 3L_9888858_SNP [dm6]	A	T	2.452e^-4	0.794	UTR_5_PRIME CalpB UPSTREAM CalpB & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15964421	2R_15964421_SNP [dm3] 2R_20076916_SNP [dm6]	C	T	2.457e^-4	0.794	INTERGENIC
3R	13839543	3R_13839543_SNP [dm3] 3R_18013821_SNP [dm6]	T	A	2.458e^-4	0.794	UTR_3_PRIME cpo
3L	1029323	3L_1029323_SNP [dm3] 3L_1029323_SNP [dm6]	C	T	2.459e^-4	0.794	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9566329	2R_9566329_SNP [dm3] 2R_13678824_SNP [dm6]	G	A	2.459e^-4	0.794	INTRON fas
2L	14000863	2L_14000863_SNP [dm3] 2L_14000863_SNP [dm6]	G	T	2.460e^-4	0.794	INTRON rk
3L	11101674	3L_11101674_SNP [dm3] 3L_11108574_SNP [dm6]	A	G	2.460e^-4	0.794	SYNONYMOUS_CODING CG12522 UPSTREAM CG32073 DOWNSTREAM CG34012
X	2286053	X_2286053_SNP [dm3] X_2392020_SNP [dm6]	A	G	2.462e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14894866	2L_14894866_SNP [dm3] 2L_14894866_SNP [dm6]	G	A	2.463e^-4	0.794	INTERGENIC
3R	21057748	3R_21057748_SNP [dm3] 3R_25232026_SNP [dm6]	A	T	2.466e^-4	0.794	INTRON Cad96Cb	TF binding site mE1_TFBS_inv
2L	8837805	2L_8837805_SNP [dm3] 2L_8837805_SNP [dm6]	A	G	2.469e^-4	0.794	INTERGENIC
X	14668554	X_14668554_SNP [dm3] X_14774521_SNP [dm6]	A	G	2.472e^-4	0.794	UPSTREAM CG5334 INTERGENIC
2R	14532301	2R_14532301_SNP [dm3] 2R_18644796_SNP [dm6]	C	A	2.477e^-4	0.794	INTRON SP2637	TF binding site BDTNP1_TFBS_da
3R	13487758	3R_13487758_SNP [dm3] 3R_17662036_SNP [dm6]	G	A	2.477e^-4	0.794	NON_SYNONYMOUS_CODING CG14322
3L	1284142	3L_1284142_DEL [dm3] 3L_1284142_DEL [dm6]	CC	C	2.478e^-4	0.794	INTRON CG32333
2R	15397992	2R_15397992_SNP [dm3] 2R_19510487_SNP [dm6]	A	G	2.482e^-4	0.794	SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56b
2R	18368812	2R_18368812_SNP [dm3] 2R_22481307_SNP [dm6]	C	T	2.492e^-4	0.794	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15793221	X_15793221_SNP [dm3] X_15899188_SNP [dm6]	A	T	2.493e^-4	0.794	INTRON shi
2R	10736136	2R_10736136_SNP [dm3] 2R_14848631_SNP [dm6]	T	A	2.500e^-4	0.794	UTR_3_PRIME SMC2 UPSTREAM CG10209	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	21236791	3L_21236791_SNP [dm3] 3L_21243691_SNP [dm6]	C	A	2.502e^-4	0.794	INTRON Eip78C
2L	2983044	2L_2983044_SNP [dm3] 2L_2983044_SNP [dm6]	T	C	2.502e^-4	0.794	SYNONYMOUS_CODING Chd1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12686242	3L_12686242_SNP [dm3] 3L_12693142_SNP [dm6]	G	T	2.509e^-4	0.794	UPSTREAM mirr INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	11394030	2R_11394030_SNP [dm3] 2R_15506525_SNP [dm6]	C	T	2.512e^-4	0.794	UPSTREAM Ir52d DOWNSTREAM Ir52c INTERGENIC
2L	5088252	2L_5088252_SNP [dm3] 2L_5088252_SNP [dm6]	G	T	2.518e^-4	0.794	INTRON pgant5
2R	14965959	2R_14965959_SNP [dm3] 2R_19078454_SNP [dm6]	A	T	2.548e^-4	0.794	INTRON 5-HT1A
2L	4297823	2L_4297823_SNP [dm3] 2L_4297823_SNP [dm6]	C	T	2.549e^-4	0.794	INTRON tutl
3R	16797219	3R_16797219_SNP [dm3] 3R_20971497_SNP [dm6]	C	T	2.549e^-4	0.794	INTRON Atpalpha
3L	8872920	3L_8872920_SNP [dm3] 3L_8879820_SNP [dm6]	G	T	2.552e^-4	0.794	INTRON dally
2R	8897904	2R_8897904_SNP [dm3] 2R_13010399_SNP [dm6]	T	G	2.565e^-4	0.794	INTERGENIC
2R	14532078	2R_14532078_SNP [dm3] 2R_18644573_SNP [dm6]	T	G	2.566e^-4	0.794	INTRON SP2637	TF binding site BDTNP1_TFBS_da
2R	11492931	2R_11492931_SNP [dm3] 2R_15605426_SNP [dm6]	T	A	2.566e^-4	0.794	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	24284723	3R_24284723_SNP [dm3] 3R_28459001_SNP [dm6]	T	G	2.567e^-4	0.794	INTRON beat-VI
2L	5107231	2L_5107231_SNP [dm3] 2L_5107231_SNP [dm6]	G	A	2.567e^-4	0.794	INTRON Msp300	TF binding site mE1_TFBS_Trl
3R	21087197	3R_21087197_SNP [dm3] 3R_25261475_SNP [dm6]	T	G	2.569e^-4	0.794	SYNONYMOUS_CODING CG10425 DOWNSTREAM CG11857
3R	21083395	3R_21083395_SNP [dm3] 3R_25257673_SNP [dm6]	C	A	2.572e^-4	0.794	NON_SYNONYMOUS_CODING Nup358	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	6481856	3R_6481856_SNP [dm3] 3R_10656134_SNP [dm6]	G	A	2.586e^-4	0.794	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14966153	2R_14966153_SNP [dm3] 2R_19078648_SNP [dm6]	A	T	2.603e^-4	0.794	INTRON 5-HT1A
2L	11383885	2L_11383885_INS [dm3] 2L_11383885_INS [dm6]	T	TT	2.611e^-4	0.794	INTERGENIC	regulatory region REDfly_CRMs
X	13054538	X_13054538_SNP [dm3] X_13160505_SNP [dm6]	A	C	2.613e^-4	0.794	NON_SYNONYMOUS_CODING CG12096 UPSTREAM Bap60	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	19945002	3R_19945002_SNP [dm3] 3R_24119280_SNP [dm6]	C	A	2.613e^-4	0.794	INTRON Rootletin
2R	16565953	2R_16565953_SNP [dm3] 2R_20678448_SNP [dm6]	G	A	2.614e^-4	0.794	INTERGENIC
3L	21183110	3L_21183110_SNP [dm3] 3L_21190010_SNP [dm6]	G	A	2.619e^-4	0.794	INTRON CG42337	TF binding site mE1_TFBS_cad
X	20759537	X_20759537_SNP [dm3] X_20888510_SNP [dm6]	A	C	2.629e^-4	0.794	INTRON shakB
2L	14603437	2L_14603437_SNP [dm3] 2L_14603437_SNP [dm6]	G	A	2.629e^-4	0.794	SYNONYMOUS_CODING osp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
X	20759536	X_20759536_SNP [dm3] X_20888509_SNP [dm6]	T	A	2.631e^-4	0.794	INTRON shakB
2L	14894082	2L_14894082_SNP [dm3] 2L_14894082_SNP [dm6]	G	A	2.633e^-4	0.794	INTERGENIC
2R	14428583	2R_14428583_INS [dm3] 2R_18541078_INS [dm6]	G	GTG	2.644e^-4	0.794	INTRON Rgk2	TF binding site mE1_TFBS_chinmo
2L	16717567	2L_16717567_SNP [dm3] 2L_16717567_SNP [dm6]	G	A	2.647e^-4	0.794	INTRON Cyt-c-d	TF binding site BDTNP1_TFBS_dl
3R	22618682	3R_22618682_SNP [dm3] 3R_26792960_SNP [dm6]	C	A	2.649e^-4	0.794	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24165640	3R_24165640_INS [dm3] 3R_28339918_INS [dm6]	T	TT	2.653e^-4	0.794	UPSTREAM Moca-cyp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25106368	3R_25106368_SNP [dm3] 3R_29280646_SNP [dm6]	T	G	2.654e^-4	0.794	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12001375	3L_12001375_SNP [dm3] 3L_12008275_SNP [dm6]	G	T	2.656e^-4	0.794	UTR_3_PRIME rols DOWNSTREAM CG6928
3L	4713915	3L_4713915_SNP [dm3] 3L_4713915_SNP [dm6]	A	G	2.658e^-4	0.794	INTRON RhoGEF64C
3L	9253494	3L_9253494_SNP [dm3] 3L_9260394_SNP [dm6]	G	A	2.664e^-4	0.794	INTRON GluRIB
3L	1636595	3L_1636595_SNP [dm3] 3L_1636595_SNP [dm6]	C	T	2.666e^-4	0.794	INTRON nSyb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9217138	3L_9217138_SNP [dm3] 3L_9224038_SNP [dm6]	T	C	2.672e^-4	0.794	INTERGENIC
3R	19075038	3R_19075038_SNP [dm3] 3R_23249316_SNP [dm6]	G	C	2.680e^-4	0.794	UPSTREAM CG4467 DOWNSTREAM CG4449 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21248567	3R_21248567_DEL [dm3] 3R_25422845_DEL [dm6]	GTTTGTAAGCTGTCAG...	G	2.680e^-4	0.794	INTRON Fur1
3L	21104181	3L_21104181_SNP [dm3] 3L_21111081_SNP [dm6]	C	T	2.681e^-4	0.794	INTRON ko	regulatory region REDfly_CRMs
3L	8979607	3L_8979607_INS [dm3] 3L_8986507_INS [dm6]	A	TTT	2.691e^-4	0.794	UPSTREAM Galk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24089712	3R_24089712_SNP [dm3] 3R_28263990_SNP [dm6]	G	T	2.697e^-4	0.794	SYNONYMOUS_CODING CG43124 UPSTREAM CG43125
3R	16690945	3R_16690945_SNP [dm3] 3R_20865223_SNP [dm6]	A	T	2.704e^-4	0.794	INTRON CG3822
3L	18153929	3L_18153929_SNP [dm3] 3L_18160829_SNP [dm6]	T	A	2.704e^-4	0.794	INTRON CG13699
2R	16754785	2R_16754785_SNP [dm3] 2R_20867280_SNP [dm6]	T	G	2.706e^-4	0.794	DOWNSTREAM CG15227 INTERGENIC
2R	14514811	2R_14514811_SNP [dm3] 2R_18627306_SNP [dm6]	G	A	2.716e^-4	0.794	SYNONYMOUS_CODING Sec6 UPSTREAM Eip55E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	14302658	2L_14302658_SNP [dm3] 2L_14302658_SNP [dm6]	G	A	2.718e^-4	0.794	INTRON wb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4424530	2L_4424530_SNP [dm3] 2L_4424530_SNP [dm6]	G	C	2.718e^-4	0.794	INTRON CG15431
2L	4944057	2L_4944057_SNP [dm3] 2L_4944057_SNP [dm6]	C	T	2.720e^-4	0.794	SYNONYMOUS_CODING CG14044 DOWNSTREAM mRpL24
2L	14428801	2L_14428801_SNP [dm3] 2L_14428801_SNP [dm6]	C	T	2.724e^-4	0.794	EXON CR44732	TF binding site mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	3983852	2L_3983852_INS [dm3] 2L_3983852_INS [dm6]	A	ACATA	2.729e^-4	0.794	INTRON fred
3L	2548067	3L_2548067_SNP [dm3] 3L_2548067_SNP [dm6]	G	A	2.753e^-4	0.794	INTRON Spn
3R	22742884	3R_22742884_SNP [dm3] 3R_26917162_SNP [dm6]	T	G	2.766e^-4	0.794	INTRON sda
2R	16527711	2R_16527711_SNP [dm3] 2R_20640206_SNP [dm6]	G	C	2.767e^-4	0.794	NON_SYNONYMOUS_CODING rig UPSTREAM maf-S	TF binding site BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17225245	2R_17225245_SNP [dm3] 2R_21337740_SNP [dm6]	A	G	2.778e^-4	0.794	SYNONYMOUS_CODING dom DOWNSTREAM dom	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14180042	2R_14180042_SNP [dm3] 2R_18292537_SNP [dm6]	C	T	2.778e^-4	0.794	START_GAINED CG14502 UTR_5_PRIME CG14502 INTRON CG14502 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26211177	3R_26211177_SNP [dm3] 3R_30385455_SNP [dm6]	T	A	2.780e^-4	0.794	DOWNSTREAM Fer1HCH INTERGENIC
X	19077235	X_19077235_SNP [dm3] X_19183202_SNP [dm6]	T	A	2.781e^-4	0.794	UPSTREAM CG33253 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3281676	2L_3281676_SNP [dm3] 2L_3281676_SNP [dm6]	T	A	2.783e^-4	0.794	INTERGENIC
3L	9831134	3L_9831134_SNP [dm3] 3L_9838034_SNP [dm6]	T	C	2.788e^-4	0.794	SYNONYMOUS_CODING Cdk8	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25161259	3R_25161259_SNP [dm3] 3R_29335537_SNP [dm6]	G	A	2.794e^-4	0.794	INTERGENIC
3R	22621721	3R_22621721_SNP [dm3] 3R_26795999_SNP [dm6]	A	G	2.798e^-4	0.794	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5916419	3L_5916419_SNP [dm3] 3L_5923319_SNP [dm6]	A	C	2.799e^-4	0.794	UPSTREAM Vap-33B INTRON CG32407	TF binding site mE1_TFBS_cad
X	13186045	X_13186045_SNP [dm3] X_13292012_SNP [dm6]	G	A	2.803e^-4	0.794	SYNONYMOUS_CODING CG15744	TF binding site mE1_TFBS_chinmo
X	13055130	X_13055130_SNP [dm3] X_13161097_SNP [dm6]	G	T	2.808e^-4	0.794	NON_SYNONYMOUS_CODING CG12096 DOWNSTREAM CG34411	TF binding site mE1_TFBS_sens
X	6139099	X_6139099_SNP [dm3] X_6245066_SNP [dm6]	T	C	2.815e^-4	0.794	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_chinmo
2L	9228731	2L_9228731_SNP [dm3] 2L_9228731_SNP [dm6]	C	T	2.818e^-4	0.794	INTRON tai
3L	10303441	3L_10303441_SNP [dm3] 3L_10310341_SNP [dm6]	T	C	2.824e^-4	0.794	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16528492	2R_16528492_SNP [dm3] 2R_20640987_SNP [dm6]	G	T	2.828e^-4	0.794	UTR_5_PRIME maf-S UPSTREAM rig & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	24927105	3R_24927105_SNP [dm3] 3R_29101383_SNP [dm6]	G	C	2.837e^-4	0.794	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	683994	2L_683994_SNP [dm3] 2L_683994_SNP [dm6]	G	A	2.839e^-4	0.794	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14185019	3L_14185019_SNP [dm3] 3L_14191919_SNP [dm6]	T	C	2.841e^-4	0.794	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
2L	18894426	2L_18894426_SNP [dm3] 2L_18894426_SNP [dm6]	T	C	2.841e^-4	0.794	EXON CR44737	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3L	12504724	3L_12504724_SNP [dm3] 3L_12511624_SNP [dm6]	C	T	2.842e^-4	0.794	SYNONYMOUS_CODING sti
3R	22845461	3R_22845461_SNP [dm3] 3R_27019739_SNP [dm6]	C	T	2.842e^-4	0.794	UTR_5_PRIME CG17191 DOWNSTREAM CG6283 INTRON RYa-R
2L	14895010	2L_14895010_SNP [dm3] 2L_14895010_SNP [dm6]	T	C	2.843e^-4	0.794	INTERGENIC
2R	18910207	2R_18910207_INS [dm3] 2R_23022684_INS [dm6]	T	TGAAACT	2.851e^-4	0.794	INTRON twi & 1 other
3L	7633811	3L_7633811_SNP [dm3] 3L_7640711_SNP [dm6]	A	T	2.854e^-4	0.794	UPSTREAM CG33276 DOWNSTREAM snoRNA:Me18S-A1806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12191029	2R_12191029_SNP [dm3] 2R_16303524_SNP [dm6]	G	C	2.858e^-4	0.794	EXON CR45232	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8977844	3L_8977844_SNP [dm3] 3L_8984744_SNP [dm6]	T	C	2.859e^-4	0.794	INTRON Galk
3L	8979590	3L_8979590_SNP [dm3] 3L_8986490_SNP [dm6]	T	G	2.859e^-4	0.794	UPSTREAM Galk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8979656	3L_8979656_SNP [dm3] 3L_8986556_SNP [dm6]	C	A	2.859e^-4	0.794	UPSTREAM Galk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7564127	3L_7564127_SNP [dm3] 3L_7571027_SNP [dm6]	G	A	2.864e^-4	0.794	INTERGENIC
2R	11334596	2R_11334596_SNP [dm3] 2R_15447091_SNP [dm6]	G	A	2.866e^-4	0.794	INTRON CG43729
3R	8706189	3R_8706189_SNP [dm3] 3R_12880467_SNP [dm6]	G	A	2.878e^-4	0.794	INTERGENIC
2L	9148531	2L_9148531_SNP [dm3] 2L_9148531_SNP [dm6]	A	G	2.881e^-4	0.794	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14514526	2R_14514526_SNP [dm3] 2R_18627021_SNP [dm6]	A	C	2.882e^-4	0.794	SYNONYMOUS_CODING Sec6 UPSTREAM Eip55E	TF binding site mE1_TFBS_sens
2L	11056689	2L_11056689_SNP [dm3] 2L_11056689_SNP [dm6]	T	A	2.890e^-4	0.794	UPSTREAM Samuel INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11056690	2L_11056690_SNP [dm3] 2L_11056690_SNP [dm6]	T	A	2.890e^-4	0.794	UPSTREAM Samuel INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11409745	2L_11409745_SNP [dm3] 2L_11409745_SNP [dm6]	A	T	2.895e^-4	0.794	INTERGENIC	regulatory region REDfly_CRMs
3R	2261064	3R_2261064_DEL [dm3] 3R_6435342_DEL [dm6]	TGGGCTTT	T	2.900e^-4	0.794	INTRON gpp
X	16593170	X_16593170_SNP [dm3] X_16699137_SNP [dm6]	C	A	2.905e^-4	0.794	DOWNSTREAM CG9676 INTRON CG4678
3L	11095100	3L_11095100_INS [dm3] 3L_11102000_INS [dm6]	T	TC	2.919e^-4	0.794	FRAME_SHIFT Elo68alpha UPSTREAM Elo68beta
3L	2156515	3L_2156515_SNP [dm3] 3L_2156515_SNP [dm6]	A	T	2.920e^-4	0.794	INTRON CG15822	TF binding site mE1_TFBS_cad
2R	2569173	2R_2569173_SNP [dm3] 2R_6681668_SNP [dm6]	T	C	2.922e^-4	0.794	UPSTREAM CR44164 DOWNSTREAM CR44165 INTRON CG9422	TF binding site mE1_TFBS_HSA
3R	18116731	3R_18116731_SNP [dm3] 3R_22291009_SNP [dm6]	T	C	2.922e^-4	0.794	INTRON SKIP
3L	3960241	3L_3960241_SNP [dm3] 3L_3960241_SNP [dm6]	G	T	2.931e^-4	0.794	UPSTREAM CG12605 INTRON CG12605
2L	12718768	2L_12718768_SNP [dm3] 2L_12718768_SNP [dm6]	G	T	2.932e^-4	0.794	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	8647206	2R_8647206_SNP [dm3] 2R_12759701_SNP [dm6]	A	T	2.940e^-4	0.794	UTR_3_PRIME Dgkepsilon & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21833604	3R_21833604_SNP [dm3] 3R_26007882_SNP [dm6]	T	C	2.941e^-4	0.794	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15152888	3L_15152888_SNP [dm3] 3L_15159788_SNP [dm6]	G	C	2.942e^-4	0.794	INTRON Prp31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14658960	2R_14658960_SNP [dm3] 2R_18771455_SNP [dm6]	A	C	2.943e^-4	0.794	UPSTREAM Mctp INTRON Mctp
3R	2493820	3R_2493820_SNP [dm3] 3R_6668098_SNP [dm6]	G	A	2.948e^-4	0.794	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12885810	2L_12885810_SNP [dm3] 2L_12885810_SNP [dm6]	G	T	2.951e^-4	0.794	INTERGENIC
3R	19945006	3R_19945006_SNP [dm3] 3R_24119284_SNP [dm6]	A	G	2.955e^-4	0.794	INTRON Rootletin
2R	19203225	2R_19203225_SNP [dm3] 2R_23315702_SNP [dm6]	A	T	2.957e^-4	0.794	INTERGENIC
X	16593168	X_16593168_SNP [dm3] X_16699135_SNP [dm6]	G	C	2.958e^-4	0.794	DOWNSTREAM CG9676 INTRON CG4678
X	12943888	X_12943888_SNP [dm3] X_13049855_SNP [dm6]	T	G	2.961e^-4	0.794	INTRON rad
3L	8010671	3L_8010671_SNP [dm3] 3L_8017571_SNP [dm6]	A	G	2.962e^-4	0.794	INTRON nmo
2L	17393334	2L_17393334_SNP [dm3] 2L_17393334_SNP [dm6]	G	A	2.968e^-4	0.794	INTRON CLIP-190
X	18642836	X_18642836_SNP [dm3] X_18748803_SNP [dm6]	T	G	2.970e^-4	0.794	UPSTREAM CG12609 INTERGENIC
2R	15195895	2R_15195895_SNP [dm3] 2R_19308390_SNP [dm6]	G	A	2.972e^-4	0.794	SYNONYMOUS_CODING EndoB DOWNSTREAM CG7461
3L	12348871	3L_12348871_SNP [dm3] 3L_12355771_SNP [dm6]	C	A	2.973e^-4	0.794	INTERGENIC
2L	4707716	2L_4707716_SNP [dm3] 2L_4707716_SNP [dm6]	C	A	2.974e^-4	0.794	INTRON CG34351
3L	6732417	3L_6732417_SNP [dm3] 3L_6739317_SNP [dm6]	G	A	2.975e^-4	0.794	NON_SYNONYMOUS_CODING dikar UTR_3_PRIME dikar DOWNSTREAM dikar
2R	7656363	2R_7656363_SNP [dm3] 2R_11768858_SNP [dm6]	G	A	2.978e^-4	0.794	INTRON ths & 1 other
2R	8513123	2R_8513123_SNP [dm3] 2R_12625618_SNP [dm6]	T	G	2.980e^-4	0.794	UPSTREAM CG17760 DOWNSTREAM CG30054 INTERGENIC
X	5873166	X_5873166_SNP [dm3] X_5979133_SNP [dm6]	T	A	2.984e^-4	0.794	INTRON Grip
3R	19999885	3R_19999885_SNP [dm3] 3R_24174163_SNP [dm6]	A	G	2.988e^-4	0.794	INTRON CG13606
3L	7585583	3L_7585583_DEL [dm3] 3L_7592483_DEL [dm6]	TTTTAGTTGTTTTGCGACCA...	C	2.989e^-4	0.794	UPSTREAM CG33275 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16332958	2L_16332958_SNP [dm3] 2L_16332958_SNP [dm6]	T	A	2.989e^-4	0.794	NON_SYNONYMOUS_CODING CG31817
2R	5514405	2R_5514405_SNP [dm3] 2R_9626900_SNP [dm6]	G	A	2.996e^-4	0.794	INTRON Mmp2
2R	18918196	2R_18918196_SNP [dm3] 2R_23030673_SNP [dm6]	T	A	2.997e^-4	0.794	INTRON twi & 1 other
3L	15506206	3L_15506206_SNP [dm3] 3L_15513106_SNP [dm6]	C	A	3.000e^-4	0.794	UTR_3_PRIME Eip71CD	TF binding site mE1_TFBS_cad
2L	9858712	2L_9858712_SNP [dm3] 2L_9858712_SNP [dm6]	A	G	3.000e^-4	0.794	INTRON nAChRalpha6
3R	19458348	3R_19458348_SNP [dm3] 3R_23632626_SNP [dm6]	G	A	3.002e^-4	0.794	UTR_5_PRIME CG31145 INTRON CG31145	TF binding site mE1_TFBS_inv
2R	14965967	2R_14965967_SNP [dm3] 2R_19078462_SNP [dm6]	G	A	3.004e^-4	0.794	INTRON 5-HT1A
2R	13718254	2R_13718254_SNP [dm3] 2R_17830749_SNP [dm6]	C	T	3.012e^-4	0.794	INTRON grh
3L	8473862	3L_8473862_SNP [dm3] 3L_8480762_SNP [dm6]	T	C	3.013e^-4	0.794	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13152181	3R_13152181_SNP [dm3] 3R_17326459_SNP [dm6]	T	C	3.035e^-4	0.794	INTRON beat-IIa
3L	21335200	3L_21335200_SNP [dm3] 3L_21342100_SNP [dm6]	T	A	3.035e^-4	0.794	SYNONYMOUS_CODING CG7324
2R	17477121	2R_17477121_SNP [dm3] 2R_21589616_SNP [dm6]	C	T	3.037e^-4	0.794	UPSTREAM CG33225 INTERGENIC
2R	16339274	2R_16339274_SNP [dm3] 2R_20451769_SNP [dm6]	A	G	3.041e^-4	0.794	INTRON CG12484
3R	24616705	3R_24616705_SNP [dm3] 3R_28790983_SNP [dm6]	G	A	3.043e^-4	0.794	SYNONYMOUS_CODING intr DOWNSTREAM CG34295
3L	22604267	3L_22604267_DEL [dm3] 3L_22611167_DEL [dm6]	TACATCCCCACCTTCCAAGG...	T	3.046e^-4	0.794	INTRON CG14459
3R	26211008	3R_26211008_SNP [dm3] 3R_30385286_SNP [dm6]	T	A	3.046e^-4	0.794	DOWNSTREAM Fer1HCH INTERGENIC
3L	8979630	3L_8979630_SNP [dm3] 3L_8986530_SNP [dm6]	T	C	3.050e^-4	0.794	UPSTREAM Galk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18153946	3L_18153946_SNP [dm3] 3L_18160846_SNP [dm6]	C	T	3.050e^-4	0.794	INTRON CG13699
3L	11108332	3L_11108332_SNP [dm3] 3L_11115232_SNP [dm6]	C	T	3.059e^-4	0.794	SYNONYMOUS_CODING fd68A
2R	12356767	2R_12356767_SNP [dm3] 2R_16469262_SNP [dm6]	T	C	3.060e^-4	0.794	DOWNSTREAM CheB53b INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7250041	2L_7250041_SNP [dm3] 2L_7250041_SNP [dm6]	T	G	3.067e^-4	0.794	UPSTREAM Ndae1 DOWNSTREAM CG13786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	9881968	3L_9881968_SNP [dm3] 3L_9888868_SNP [dm6]	A	G	3.070e^-4	0.794	UTR_5_PRIME CalpB UPSTREAM CalpB & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24922113	3R_24922113_SNP [dm3] 3R_29096391_SNP [dm6]	C	T	3.078e^-4	0.794	INTRON CG11873 EXON CR45030
3R	24754128	3R_24754128_SNP [dm3] 3R_28928406_SNP [dm6]	G	A	3.084e^-4	0.794	INTRON CG14521
2L	5981514	2L_5981514_SNP [dm3] 2L_5981514_SNP [dm6]	G	A	3.086e^-4	0.794	UPSTREAM eIF-4a & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2R	14373725	2R_14373725_SNP [dm3] 2R_18486220_SNP [dm6]	G	C	3.089e^-4	0.794	INTRON CG30116
2R	2453604	2R_2453604_SNP [dm3] 2R_6566099_SNP [dm6]	G	T	3.094e^-4	0.794	INTRON jing	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15719623	3L_15719623_SNP [dm3] 3L_15726523_SNP [dm6]	T	G	3.097e^-4	0.794	INTRON comm
2R	16541984	2R_16541984_SNP [dm3] 2R_20654479_SNP [dm6]	A	T	3.109e^-4	0.794	INTRON Lrt & 1 other
X	19891645	X_19891645_DEL [dm3] X_19997612_DEL [dm6]	CC	C	3.111e^-4	0.794	INTERGENIC
3L	10976619	3L_10976619_SNP [dm3] 3L_10983519_SNP [dm6]	C	G	3.112e^-4	0.794	SYNONYMOUS_CODING klu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14595927	2L_14595927_SNP [dm3] 2L_14595927_SNP [dm6]	T	A	3.116e^-4	0.794	INTERGENIC
3L	8006625	3L_8006625_SNP [dm3] 3L_8013525_SNP [dm6]	T	C	3.122e^-4	0.794	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	21722708	3R_21722708_SNP [dm3] 3R_25896986_SNP [dm6]	T	A	3.123e^-4	0.794	SYNONYMOUS_CODING CG5948 UPSTREAM MCO3
2R	18048631	2R_18048631_DEL [dm3] 2R_22161126_DEL [dm6]	AA	A	3.130e^-4	0.794	INTRON a
X	20431545	X_20431545_SNP [dm3] X_20560518_SNP [dm6]	A	T	3.135e^-4	0.794	INTRON RunxB
3R	17143509	3R_17143509_SNP [dm3] 3R_21317787_SNP [dm6]	T	A	3.137e^-4	0.794	DOWNSTREAM mir-4951 & 1 other EXON Hsromega
3R	20919568	3R_20919568_SNP [dm3] 3R_25093846_SNP [dm6]	T	A	3.147e^-4	0.794	INTERGENIC
2R	16922903	2R_16922903_SNP [dm3] 2R_21035398_SNP [dm6]	C	T	3.150e^-4	0.794	INTERGENIC
2R	9160544	2R_9160544_SNP [dm3] 2R_13273039_SNP [dm6]	C	T	3.151e^-4	0.794	INTRON Dh31-R
2R	19198191	2R_19198191_SNP [dm3] 2R_23310668_SNP [dm6]	A	G	3.153e^-4	0.794	UPSTREAM Prosbeta5R1 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	5399391	3L_5399391_SNP [dm3] 3L_5406291_SNP [dm6]	A	C	3.157e^-4	0.794	INTERGENIC
X	15793232	X_15793232_SNP [dm3] X_15899199_SNP [dm6]	T	A	3.159e^-4	0.794	INTRON shi
X	20431732	X_20431732_SNP [dm3] X_20560705_SNP [dm6]	A	C	3.160e^-4	0.794	INTRON RunxB
3R	25045743	3R_25045743_SNP [dm3] 3R_29220021_SNP [dm6]	T	C	3.163e^-4	0.794	UPSTREAM Ef1gamma DOWNSTREAM CR31044 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	14615111	X_14615111_SNP [dm3] X_14721078_SNP [dm6]	T	C	3.166e^-4	0.794	INTRON NetB
3L	8964899	3L_8964899_SNP [dm3] 3L_8971799_SNP [dm6]	G	C	3.166e^-4	0.794	DOWNSTREAM pix & 1 other INTERGENIC
X	13364878	X_13364878_SNP [dm3] X_13470845_SNP [dm6]	A	G	3.168e^-4	0.794	INTRON Neto
2L	4957727	2L_4957727_SNP [dm3] 2L_4957727_SNP [dm6]	A	T	3.180e^-4	0.794	UPSTREAM CG34124 INTRON Marcal1
X	9506680	X_9506680_SNP [dm3] X_9612647_SNP [dm6]	C	A	3.183e^-4	0.794	INTRON CG42797	TF binding site mE1_TFBS_cad
3R	21833710	3R_21833710_SNP [dm3] 3R_26007988_SNP [dm6]	G	A	3.185e^-4	0.794	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24026448	3R_24026448_DEL [dm3] 3R_28200726_DEL [dm6]	AA	A	3.186e^-4	0.794	INTRON CG34354
2R	7279464	2R_7279464_SNP [dm3] 2R_11391959_SNP [dm6]	T	C	3.204e^-4	0.794	INTRON sprt
2L	4693634	2L_4693634_SNP [dm3] 2L_4693634_SNP [dm6]	C	G	3.209e^-4	0.794	INTERGENIC
2L	4152227	2L_4152227_SNP [dm3] 2L_4152227_SNP [dm6]	T	A	3.228e^-4	0.794	INTERGENIC
2L	4957712	2L_4957712_SNP [dm3] 2L_4957712_SNP [dm6]	A	C	3.230e^-4	0.794	UPSTREAM CG34124 INTRON Marcal1
3L	8992180	3L_8992180_SNP [dm3] 3L_8999080_SNP [dm6]	G	C	3.230e^-4	0.794	NON_SYNONYMOUS_CODING CG5087	TF binding site mE1_TFBS_sens
2L	8351436	2L_8351436_SNP [dm3] 2L_8351436_SNP [dm6]	T	A	3.233e^-4	0.794	UPSTREAM Mur29B DOWNSTREAM CG7778 INTERGENIC
2L	9968887	2L_9968887_DEL [dm3] 2L_9968887_DEL [dm6]	ATTTTA	A	3.235e^-4	0.794	DOWNSTREAM RpL13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12978895	2L_12978895_SNP [dm3] 2L_12978895_SNP [dm6]	A	T	3.243e^-4	0.794	UTR_5_PRIME Vha68-3 DOWNSTREAM Vha68-2
2L	11223238	2L_11223238_SNP [dm3] 2L_11223238_SNP [dm6]	G	A	3.249e^-4	0.794	INTRON ab
3R	24922578	3R_24922578_SNP [dm3] 3R_29096856_SNP [dm6]	A	G	3.252e^-4	0.794	DOWNSTREAM CR45030 INTRON CG11873
2L	8538656	2L_8538656_SNP [dm3] 2L_8538656_SNP [dm6]	A	G	3.255e^-4	0.794	DOWNSTREAM CG17834 INTRON CG17834
X	5961797	X_5961797_DEL [dm3] X_6067764_DEL [dm6]	GA	C	3.255e^-4	0.794	UPSTREAM CG5928 INTERGENIC
3L	8473852	3L_8473852_DEL [dm3] 3L_8480752_DEL [dm6]	GTG	A	3.256e^-4	0.794	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	21151191	3L_21151191_SNP [dm3] 3L_21158091_SNP [dm6]	T	C	3.271e^-4	0.794	INTRON Ac78C
2L	7626997	2L_7626997_SNP [dm3] 2L_7626997_SNP [dm6]	A	T	3.273e^-4	0.794	INTERGENIC
2R	17024620	2R_17024620_SNP [dm3] 2R_21137115_SNP [dm6]	A	C	3.273e^-4	0.794	INTRON Magi
2R	235675	2R_235675_SNP [dm3] 2R_4348170_SNP [dm6]	T	G	3.281e^-4	0.794	INTRON Gprk1
2R	16528386	2R_16528386_SNP [dm3] 2R_20640881_SNP [dm6]	G	A	3.283e^-4	0.794	UPSTREAM maf-S & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	26520167	3R_26520167_SNP [dm3] 3R_30694445_SNP [dm6]	C	T	3.288e^-4	0.794	SYNONYMOUS_CODING CG12069
2R	20357771	2R_20357771_SNP [dm3] 2R_24470248_SNP [dm6]	A	T	3.289e^-4	0.794	INTRON CG13579
3R	5639778	3R_5639778_SNP [dm3] 3R_9814056_SNP [dm6]	T	C	3.292e^-4	0.794	UPSTREAM eloF & 1 other DOWNSTREAM CG8534 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14599345	2L_14599345_SNP [dm3] 2L_14599345_SNP [dm6]	T	C	3.293e^-4	0.794	UTR_3_PRIME osp UPSTREAM tRNA:P:35Bc DOWNSTREAM tRNA:P:35Bb & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15310964	2L_15310964_SNP [dm3] 2L_15310964_SNP [dm6]	C	T	3.311e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	7565067	2R_7565067_SNP [dm3] 2R_11677562_SNP [dm6]	A	G	3.322e^-4	0.794	SYNONYMOUS_CODING Tret1-2 INTRON Roc2	TF binding site mE1_TFBS_cad
3L	2586757	3L_2586757_SNP [dm3] 3L_2586757_SNP [dm6]	G	T	3.339e^-4	0.794	UPSTREAM msn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1380876	3L_1380876_SNP [dm3] 3L_1380876_SNP [dm6]	T	A	3.342e^-4	0.794	DOWNSTREAM tRNA:CR32330 & 2 others INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl
3L	11192576	3L_11192576_SNP [dm3] 3L_11199476_SNP [dm6]	G	A	3.344e^-4	0.794	UPSTREAM CG7607 INTRON Plod
2L	14603317	2L_14603317_SNP [dm3] 2L_14603317_SNP [dm6]	G	A	3.346e^-4	0.794	SYNONYMOUS_CODING osp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3R	12189904	3R_12189904_SNP [dm3] 3R_16364182_SNP [dm6]	A	C	3.347e^-4	0.794	INTRON CG14880
3R	2201260	3R_2201260_SNP [dm3] 3R_6375538_SNP [dm6]	T	A	3.354e^-4	0.794	DOWNSTREAM snoRNA:83E4-5 INTRON CG42564
3L	8672560	3L_8672560_SNP [dm3] 3L_8679460_SNP [dm6]	G	T	3.354e^-4	0.794	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs
2L	12631422	2L_12631422_SNP [dm3] 2L_12631422_SNP [dm6]	G	A	3.355e^-4	0.794	INTRON Ref2
X	12823643	X_12823643_SNP [dm3] X_12929610_SNP [dm6]	G	C	3.361e^-4	0.794	INTRON fne	TF binding site BDTNP1_TFBS_dl
X	18262051	X_18262051_SNP [dm3] X_18368018_SNP [dm6]	A	G	3.363e^-4	0.794	INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	13767116	2R_13767116_SNP [dm3] 2R_17879611_SNP [dm6]	C	T	3.364e^-4	0.794	NON_SYNONYMOUS_CODING CG30325 DOWNSTREAM CG30110 INTRON Elk
X	19347345	X_19347345_SNP [dm3] X_19453312_SNP [dm6]	G	C	3.376e^-4	0.794	INTRON kek5	TF binding site mE1_TFBS_chinmo
3L	8473872	3L_8473872_SNP [dm3] 3L_8480772_SNP [dm6]	G	A	3.379e^-4	0.794	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	26673115	3R_26673115_SNP [dm3] 3R_30847393_SNP [dm6]	C	A	3.379e^-4	0.794	INTERGENIC
3L	5162056	3L_5162056_SNP [dm3] 3L_5168956_SNP [dm6]	A	T	3.392e^-4	0.794	INTRON shep	TF binding site mE1_TFBS_Kr
2R	14966107	2R_14966107_SNP [dm3] 2R_19078602_SNP [dm6]	T	A	3.394e^-4	0.794	INTRON 5-HT1A
2L	14895034	2L_14895034_SNP [dm3] 2L_14895034_SNP [dm6]	C	T	3.397e^-4	0.794	INTERGENIC
3R	23385039	3R_23385039_SNP [dm3] 3R_27559317_SNP [dm6]	C	T	3.397e^-4	0.794	UPSTREAM Klp98A DOWNSTREAM CG5646 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	11223391	2L_11223391_SNP [dm3] 2L_11223391_SNP [dm6]	G	T	3.400e^-4	0.794	INTRON ab
2L	6092821	2L_6092821_SNP [dm3] 2L_6092821_SNP [dm6]	G	T	3.407e^-4	0.794	INTRON Kr-h1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	7901476	2L_7901476_SNP [dm3] 2L_7901476_SNP [dm6]	A	G	3.409e^-4	0.794	INTRON Snoo
2L	7901441	2L_7901441_SNP [dm3] 2L_7901441_SNP [dm6]	C	A	3.421e^-4	0.794	INTRON Snoo
3R	21833645	3R_21833645_SNP [dm3] 3R_26007923_SNP [dm6]	C	A	3.427e^-4	0.794	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5516918	2R_5516918_SNP [dm3] 2R_9629413_SNP [dm6]	G	A	3.438e^-4	0.794	INTRON Mmp2	TF binding site mE1_TFBS_inv
2L	2417686	2L_2417686_SNP [dm3] 2L_2417686_SNP [dm6]	C	A	3.438e^-4	0.794	NON_SYNONYMOUS_CODING CG34448 UPSTREAM CG31948 DOWNSTREAM CG34447
2R	9741878	2R_9741878_SNP [dm3] 2R_13854373_SNP [dm6]	C	T	3.444e^-4	0.794	UPSTREAM CR44367 & 1 other DOWNSTREAM CG6553 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA
X	13054147	X_13054147_SNP [dm3] X_13160114_SNP [dm6]	T	G	3.448e^-4	0.794	NON_SYNONYMOUS_CODING CG12096 UPSTREAM Bap60	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	19944881	3R_19944881_SNP [dm3] 3R_24119159_SNP [dm6]	T	G	3.449e^-4	0.794	INTRON Rootletin
2R	6577171	2R_6577171_SNP [dm3] 2R_10689666_SNP [dm6]	T	C	3.453e^-4	0.794	INTRON stan
3L	1876134	3L_1876134_SNP [dm3] 3L_1876134_SNP [dm6]	C	T	3.454e^-4	0.794	SYNONYMOUS_CODING dre4 DOWNSTREAM CG13937	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	7263631	2R_7263631_DEL [dm3] 2R_11376126_DEL [dm6]	AATAC	A	3.461e^-4	0.794	INTRON CG13203	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9743087	2R_9743087_SNP [dm3] 2R_13855582_SNP [dm6]	A	G	3.462e^-4	0.794	SYNONYMOUS_CODING CG6553 DOWNSTREAM tum EXON CR44367	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12586507	2L_12586507_SNP [dm3] 2L_12586507_SNP [dm6]	G	A	3.464e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	13046378	2L_13046378_SNP [dm3] 2L_13046378_SNP [dm6]	A	G	3.466e^-4	0.794	INTRON CG9932
X	14991031	X_14991031_SNP [dm3] X_15096998_SNP [dm6]	C	A	3.468e^-4	0.794	UPSTREAM CG9072 INTRON Rab3-GEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13046396	2L_13046396_SNP [dm3] 2L_13046396_SNP [dm6]	G	A	3.469e^-4	0.794	INTRON CG9932
3L	4482735	3L_4482735_SNP [dm3] 3L_4482735_SNP [dm6]	T	C	3.471e^-4	0.794	UPSTREAM CG11350 INTERGENIC
3R	17143515	3R_17143515_INS [dm3] 3R_21317793_INS [dm6]	A	ACTTTCAA	3.490e^-4	0.794	DOWNSTREAM mir-4951 & 1 other EXON Hsromega
3L	8031284	3L_8031284_SNP [dm3] 3L_8038184_SNP [dm6]	G	A	3.497e^-4	0.794	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	8310665	3L_8310665_SNP [dm3] 3L_8317565_SNP [dm6]	C	T	3.498e^-4	0.794	DOWNSTREAM CG43059 INTERGENIC
3R	11806295	3R_11806295_SNP [dm3] 3R_15980573_SNP [dm6]	A	G	3.499e^-4	0.794	SYNONYMOUS_CODING Hel89B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17143817	3R_17143817_SNP [dm3] 3R_21318095_SNP [dm6]	C	G	3.503e^-4	0.794	DOWNSTREAM CG16791 & 1 other INTERGENIC
2R	18572042	2R_18572042_SNP [dm3] 2R_22684537_SNP [dm6]	G	A	3.508e^-4	0.794	DOWNSTREAM ppa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20759524	X_20759524_DEL [dm3] X_20888497_DEL [dm6]	GACATGTAT	G	3.508e^-4	0.794	INTRON shakB
3L	17429815	3L_17429815_SNP [dm3] 3L_17436715_SNP [dm6]	G	A	3.518e^-4	0.794	SYNONYMOUS_CODING CG32176 UPSTREAM CG12229
2L	9250844	2L_9250844_SNP [dm3] 2L_9250844_SNP [dm6]	G	A	3.522e^-4	0.794	SYNONYMOUS_CODING aust DOWNSTREAM CR43734 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16673129	3R_16673129_SNP [dm3] 3R_20847407_SNP [dm6]	A	C	3.524e^-4	0.794	SYNONYMOUS_CODING CG15696	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18168537	X_18168537_SNP [dm3] X_18274504_SNP [dm6]	C	T	3.526e^-4	0.794	INTERGENIC
2R	18917880	2R_18917880_SNP [dm3] 2R_23030357_SNP [dm6]	A	C	3.530e^-4	0.794	INTRON twi & 1 other
3L	10975902	3L_10975902_SNP [dm3] 3L_10982802_SNP [dm6]	A	G	3.532e^-4	0.794	SYNONYMOUS_CODING klu	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14965966	2R_14965966_SNP [dm3] 2R_19078461_SNP [dm6]	T	C	3.537e^-4	0.794	INTRON 5-HT1A
X	16367101	X_16367101_SNP [dm3] X_16473068_SNP [dm6]	C	T	3.542e^-4	0.794	INTRON para	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24026447	3R_24026447_SNP [dm3] 3R_28200725_SNP [dm6]	C	T	3.542e^-4	0.794	INTRON CG34354
2R	9457072	2R_9457072_SNP [dm3] 2R_13569567_SNP [dm6]	A	C	3.544e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3R	9511399	3R_9511399_SNP [dm3] 3R_13685677_SNP [dm6]	T	A	3.545e^-4	0.794	INTRON omd & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3019466	2L_3019466_INS [dm3] 2L_3019466_INS [dm6]	T	TT	3.550e^-4	0.794	INTRON CG17264	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	15114962	3R_15114962_SNP [dm3] 3R_19289240_SNP [dm6]	C	G	3.555e^-4	0.794	EXON CR43451
2L	22196637	2L_22196637_SNP [dm3] 2L_22196637_SNP [dm6]	A	T	3.559e^-4	0.794	SYNONYMOUS_CODING Ir40a UTR_5_PRIME Ir40a
2R	6169869	2R_6169869_SNP [dm3] 2R_10282364_SNP [dm6]	A	G	3.560e^-4	0.794	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24167316	3R_24167316_SNP [dm3] 3R_28341594_SNP [dm6]	A	T	3.561e^-4	0.794	UTR_5_PRIME Moca-cyp INTRON Moca-cyp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11409272	2L_11409272_SNP [dm3] 2L_11409272_SNP [dm6]	T	C	3.564e^-4	0.794	INTERGENIC	regulatory region REDfly_CRMs
3L	8734446	3L_8734446_SNP [dm3] 3L_8741346_SNP [dm6]	T	C	3.581e^-4	0.794	INTRON Prm	TF binding site BDTNP1_TFBS_dl
3R	11791165	3R_11791165_SNP [dm3] 3R_15965443_SNP [dm6]	A	G	3.600e^-4	0.794	UPSTREAM Rbf2 & 1 other DOWNSTREAM CG5516 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3R	21266293	3R_21266293_SNP [dm3] 3R_25440571_SNP [dm6]	A	G	3.604e^-4	0.794	INTRON Fur1
2L	612870	2L_612870_SNP [dm3] 2L_612870_SNP [dm6]	G	A	3.607e^-4	0.794	INTERGENIC
2L	13081755	2L_13081755_SNP [dm3] 2L_13081755_SNP [dm6]	T	C	3.610e^-4	0.794	INTERGENIC
2R	6294005	2R_6294005_DEL [dm3] 2R_10406500_DEL [dm6]	TGAACAGGCCCGT...	T	3.618e^-4	0.794	DOWNSTREAM CG12898 INTRON CG42732
3L	9882025	3L_9882025_SNP [dm3] 3L_9888925_SNP [dm6]	A	T	3.622e^-4	0.794	UTR_5_PRIME CalpB UPSTREAM CalpB & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23760743	3R_23760743_SNP [dm3] 3R_27935021_SNP [dm6]	A	G	3.625e^-4	0.794	SYNONYMOUS_CODING Mes-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	18767754	2L_18767754_SNP [dm3] 2L_18767754_SNP [dm6]	T	C	3.625e^-4	0.794	INTRON ham
2R	8843773	2R_8843773_SNP [dm3] 2R_12956268_SNP [dm6]	G	A	3.627e^-4	0.794	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	16795877	3R_16795877_SNP [dm3] 3R_20970155_SNP [dm6]	C	A	3.634e^-4	0.794	INTRON Atpalpha
2L	4046402	2L_4046402_SNP [dm3] 2L_4046402_SNP [dm6]	A	T	3.635e^-4	0.794	INTRON ed
X	2613581	X_2613581_SNP [dm3] X_2719548_SNP [dm6]	T	C	3.636e^-4	0.794	SYNONYMOUS_CODING CG2701 UPSTREAM fs_1_Yb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	5476784	2L_5476784_SNP [dm3] 2L_5476784_SNP [dm6]	T	C	3.638e^-4	0.794	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	17075576	2R_17075576_SNP [dm3] 2R_21188071_SNP [dm6]	C	T	3.645e^-4	0.794	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
2L	4340828	2L_4340828_DEL [dm3] 2L_4340828_DEL [dm6]	TG	A	3.649e^-4	0.794	INTRON Atet
X	20483962	X_20483962_SNP [dm3] X_20612935_SNP [dm6]	A	G	3.652e^-4	0.794	INTRON RunxA	TF binding site mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
3R	16797220	3R_16797220_SNP [dm3] 3R_20971498_SNP [dm6]	T	A	3.652e^-4	0.794	INTRON Atpalpha
3R	19964536	3R_19964536_SNP [dm3] 3R_24138814_SNP [dm6]	A	G	3.652e^-4	0.794	INTRON Npc2f	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16332969	2L_16332969_SNP [dm3] 2L_16332969_SNP [dm6]	C	T	3.656e^-4	0.794	SYNONYMOUS_CODING CG31817
2L	14602762	2L_14602762_SNP [dm3] 2L_14602762_SNP [dm6]	T	C	3.658e^-4	0.794	SYNONYMOUS_CODING osp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
X	12404442	X_12404442_SNP [dm3] X_12510409_SNP [dm6]	G	A	3.658e^-4	0.794	INTRON CG2556
2L	5188805	2L_5188805_SNP [dm3] 2L_5188805_SNP [dm6]	C	T	3.659e^-4	0.794	NON_SYNONYMOUS_CODING Msp300 DOWNSTREAM snoRNA:Psi28S-2263	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15744909	2L_15744909_SNP [dm3] 2L_15744909_SNP [dm6]	C	T	3.664e^-4	0.794	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Trl
3L	8035935	3L_8035935_SNP [dm3] 3L_8042835_SNP [dm6]	T	A	3.673e^-4	0.794	INTRON nmo
3L	3046252	3L_3046252_SNP [dm3] 3L_3046252_SNP [dm6]	G	T	3.691e^-4	0.794	UPSTREAM Sk2 INTRON scramb2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	6924335	2R_6924335_SNP [dm3] 2R_11036830_SNP [dm6]	A	G	3.693e^-4	0.794	INTRON luna
3L	14367618	3L_14367618_SNP [dm3] 3L_14374518_SNP [dm6]	C	T	3.698e^-4	0.794	INTERGENIC
2R	11430262	2R_11430262_SNP [dm3] 2R_15542757_SNP [dm6]	A	G	3.702e^-4	0.794	NON_SYNONYMOUS_CODING eIF2B-gamma DOWNSTREAM Vha36-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9682073	2R_9682073_INS [dm3] 2R_13794568_INS [dm6]	G	GTGGATG	3.711e^-4	0.794	UPSTREAM Cpr50Cb INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12805670	2R_12805670_SNP [dm3] 2R_16918165_SNP [dm6]	C	G	3.712e^-4	0.794	INTERGENIC
3R	22742883	3R_22742883_SNP [dm3] 3R_26917161_SNP [dm6]	T	A	3.717e^-4	0.794	INTRON sda
X	20431885	X_20431885_DEL [dm3] X_20560858_DEL [dm6]	TC	T	3.730e^-4	0.794	INTRON RunxB
3L	5280746	3L_5280746_INS [dm3] 3L_5287646_INS [dm6]	A	AGA	3.733e^-4	0.794	INTERGENIC
3L	8963589	3L_8963589_SNP [dm3] 3L_8970489_SNP [dm6]	G	A	3.738e^-4	0.794	SYNONYMOUS_CODING CG5026
3L	8964170	3L_8964170_SNP [dm3] 3L_8971070_SNP [dm6]	G	T	3.738e^-4	0.794	DOWNSTREAM pix INTRON CG5026
3L	8966003	3L_8966003_SNP [dm3] 3L_8972903_SNP [dm6]	A	G	3.738e^-4	0.794	SYNONYMOUS_CODING pix	TF binding site mE1_TFBS_sens
3L	8966273	3L_8966273_SNP [dm3] 3L_8973173_SNP [dm6]	C	T	3.738e^-4	0.794	SYNONYMOUS_CODING pix	TF binding site mE1_TFBS_sens
3L	8968995	3L_8968995_SNP [dm3] 3L_8975895_SNP [dm6]	A	T	3.738e^-4	0.794	NON_SYNONYMOUS_CODING Srp68	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8969704	3L_8969704_SNP [dm3] 3L_8976604_SNP [dm6]	C	T	3.738e^-4	0.794	SYNONYMOUS_CODING Srp68 DOWNSTREAM CG5644	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8970844	3L_8970844_SNP [dm3] 3L_8977744_SNP [dm6]	C	A	3.738e^-4	0.794	NON_SYNONYMOUS_CODING CG5644 DOWNSTREAM Srp68	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8979667	3L_8979667_SNP [dm3] 3L_8986567_SNP [dm6]	G	T	3.738e^-4	0.794	UPSTREAM Galk & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11222788	2L_11222788_SNP [dm3] 2L_11222788_SNP [dm6]	C	T	3.738e^-4	0.794	INTRON ab
3L	16216044	3L_16216044_SNP [dm3] 3L_16222944_SNP [dm6]	C	G	3.749e^-4	0.794	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14447249	3R_14447249_SNP [dm3] 3R_18621527_SNP [dm6]	T	A	3.750e^-4	0.794	UPSTREAM CG14304 INTRON qin	TF binding site BDTNP1_TFBS_dl
2L	5100297	2L_5100297_SNP [dm3] 2L_5100297_SNP [dm6]	C	T	3.751e^-4	0.794	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	24929176	3R_24929176_SNP [dm3] 3R_29103454_SNP [dm6]	A	T	3.760e^-4	0.794	NON_SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17649689	3R_17649689_SNP [dm3] 3R_21823967_SNP [dm6]	C	G	3.762e^-4	0.794	EXON CR45632	TF binding site BDTNP1_TFBS_dl
3R	14772656	3R_14772656_SNP [dm3] 3R_18946934_SNP [dm6]	T	C	3.765e^-4	0.794	INTRON CG42613
X	16724357	X_16724357_SNP [dm3] X_16830324_SNP [dm6]	A	G	3.772e^-4	0.794	INTRON CG13004
2L	7900729	2L_7900729_SNP [dm3] 2L_7900729_SNP [dm6]	T	C	3.774e^-4	0.794	INTRON Snoo
3L	956609	3L_956609_SNP [dm3] 3L_956609_SNP [dm6]	C	T	3.777e^-4	0.794	INTRON Glut1
2L	7017383	2L_7017383_SNP [dm3] 2L_7017383_SNP [dm6]	G	A	3.779e^-4	0.794	SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17740313	3R_17740313_SNP [dm3] 3R_21914591_SNP [dm6]	A	G	3.782e^-4	0.794	NON_SYNONYMOUS_CODING CG17843 DOWNSTREAM CG6690
2R	14966108	2R_14966108_SNP [dm3] 2R_19078603_SNP [dm6]	T	G	3.785e^-4	0.794	INTRON 5-HT1A
X	7250865	X_7250865_SNP [dm3] X_7356832_SNP [dm6]	C	T	3.802e^-4	0.794	INTRON CR44357 & 1 other
X	9013159	X_9013159_SNP [dm3] X_9119126_SNP [dm6]	C	A	3.803e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8614990	2R_8614990_SNP [dm3] 2R_12727485_SNP [dm6]	C	A	3.807e^-4	0.794	INTRON CG42663
3L	10818741	3L_10818741_SNP [dm3] 3L_10825641_SNP [dm6]	A	T	3.819e^-4	0.794	DOWNSTREAM CR45246 INTERGENIC
2R	11715582	2R_11715582_SNP [dm3] 2R_15828077_SNP [dm6]	T	G	3.832e^-4	0.794	INTRON tun & 1 other
2R	18656037	2R_18656037_SNP [dm3] 2R_22768532_SNP [dm6]	G	A	3.833e^-4	0.794	INTRON CG42260
3R	4683593	3R_4683593_SNP [dm3] 3R_8857871_SNP [dm6]	C	G	3.846e^-4	0.794	UPSTREAM pyd INTRON pyd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	15793204	X_15793204_SNP [dm3] X_15899171_SNP [dm6]	T	C	3.851e^-4	0.794	INTRON shi
2L	12586683	2L_12586683_SNP [dm3] 2L_12586683_SNP [dm6]	C	A	3.855e^-4	0.794	UPSTREAM nub INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7017404	2L_7017404_SNP [dm3] 2L_7017404_SNP [dm6]	C	G	3.858e^-4	0.794	NON_SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15793259	X_15793259_SNP [dm3] X_15899226_SNP [dm6]	A	T	3.862e^-4	0.794	INTRON shi
2L	8592789	2L_8592789_DEL [dm3] 2L_8592789_DEL [dm6]	TTA	T	3.866e^-4	0.794	INTRON Sema-1a & 1 other	TF binding site mE1_TFBS_HSA
X	20431841	X_20431841_SNP [dm3] X_20560814_SNP [dm6]	G	A	3.867e^-4	0.794	INTRON RunxB
2L	7017431	2L_7017431_SNP [dm3] 2L_7017431_SNP [dm6]	A	T	3.869e^-4	0.794	SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo
3L	11103117	3L_11103117_SNP [dm3] 3L_11110017_SNP [dm6]	G	A	3.874e^-4	0.794	UPSTREAM CG34012 INTRON CG7638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	14278371	2R_14278371_SNP [dm3] 2R_18390866_SNP [dm6]	C	G	3.881e^-4	0.794	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
3L	8006624	3L_8006624_SNP [dm3] 3L_8013524_SNP [dm6]	T	C	3.888e^-4	0.794	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14595124	2L_14595124_SNP [dm3] 2L_14595124_SNP [dm6]	G	A	3.892e^-4	0.794	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18692957	2L_18692957_SNP [dm3] 2L_18692957_SNP [dm6]	A	G	3.895e^-4	0.794	INTRON CG10383	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9005031	3L_9005031_DEL [dm3] 3L_9011931_DEL [dm6]	TGAATACCT	T	3.898e^-4	0.794	DOWNSTREAM Doc2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
3R	24026444	3R_24026444_SNP [dm3] 3R_28200722_SNP [dm6]	A	T	3.900e^-4	0.794	INTRON CG34354
3R	16719862	3R_16719862_SNP [dm3] 3R_20894140_SNP [dm6]	G	A	3.908e^-4	0.794	UPSTREAM CR44947 DOWNSTREAM CG10830 INTERGENIC
3R	25212391	3R_25212391_SNP [dm3] 3R_29386669_SNP [dm6]	C	T	3.908e^-4	0.794	INTRON Ptp99A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3L	8957714	3L_8957714_SNP [dm3] 3L_8964614_SNP [dm6]	C	T	3.911e^-4	0.794	NON_SYNONYMOUS_CODING CG5660 DOWNSTREAM CG5653
2L	13083761	2L_13083761_SNP [dm3] 2L_13083761_SNP [dm6]	G	A	3.911e^-4	0.794	INTERGENIC
2L	9062546	2L_9062546_SNP [dm3] 2L_9062546_SNP [dm6]	A	G	3.913e^-4	0.794	INTRON CG31708
2L	13083773	2L_13083773_INS [dm3] 2L_13083773_INS [dm6]	C	CA	3.918e^-4	0.794	INTERGENIC
2R	6978103	2R_6978103_SNP [dm3] 2R_11090598_SNP [dm6]	T	G	3.926e^-4	0.794	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	24616172	3R_24616172_SNP [dm3] 3R_28790450_SNP [dm6]	A	C	3.934e^-4	0.794	NON_SYNONYMOUS_CODING CG34295 UPSTREAM intr
3R	26210980	3R_26210980_SNP [dm3] 3R_30385258_SNP [dm6]	A	G	3.940e^-4	0.794	DOWNSTREAM Fer1HCH INTERGENIC
3L	21099305	3L_21099305_SNP [dm3] 3L_21106205_SNP [dm6]	C	T	3.952e^-4	0.794	INTRON ko	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19229179	2R_19229179_SNP [dm3] 2R_23341656_SNP [dm6]	G	A	3.957e^-4	0.794	INTERGENIC
3R	24229086	3R_24229086_SNP [dm3] 3R_28403364_SNP [dm6]	T	G	3.957e^-4	0.794	INTERGENIC
3R	17168380	3R_17168380_SNP [dm3] 3R_21342658_SNP [dm6]	C	G	3.958e^-4	0.794	NON_SYNONYMOUS_CODING CG16791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	22598028	3L_22598028_SNP [dm3] 3L_22604928_SNP [dm6]	T	G	3.962e^-4	0.794	INTRON CG14459
3L	7229331	3L_7229331_SNP [dm3] 3L_7236231_SNP [dm6]	C	T	3.966e^-4	0.794	DOWNSTREAM CG14826 & 1 other INTERGENIC
2L	3508428	2L_3508428_SNP [dm3] 2L_3508428_SNP [dm6]	T	C	3.968e^-4	0.794	UPSTREAM CR45299 & 2 others DOWNSTREAM CG31954 INTERGENIC
3R	26210975	3R_26210975_SNP [dm3] 3R_30385253_SNP [dm6]	T	A	3.969e^-4	0.794	DOWNSTREAM Fer1HCH INTERGENIC
3R	19964576	3R_19964576_INS [dm3] 3R_24138854_INS [dm6]	C	CA	3.971e^-4	0.794	INTRON Npc2f	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26850569	3R_26850569_SNP [dm3] 3R_31024847_SNP [dm6]	C	A	3.982e^-4	0.794	INTERGENIC
3L	5280711	3L_5280711_SNP [dm3] 3L_5287611_SNP [dm6]	T	G	3.991e^-4	0.794	INTERGENIC
3R	22069411	3R_22069411_SNP [dm3] 3R_26243689_SNP [dm6]	C	T	3.995e^-4	0.794	INTRON CR42745
X	10575742	X_10575742_SNP [dm3] X_10681709_SNP [dm6]	T	C	3.996e^-4	0.794	INTRON X11Lbeta
3R	24601653	3R_24601653_SNP [dm3] 3R_28775931_SNP [dm6]	C	A	4.001e^-4	0.794	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12284091	2R_12284091_SNP [dm3] 2R_16396586_SNP [dm6]	T	A	4.011e^-4	0.794	INTRON Sema-2b
3L	8969992	3L_8969992_SNP [dm3] 3L_8976892_SNP [dm6]	C	A	4.013e^-4	0.794	SYNONYMOUS_CODING Srp68 DOWNSTREAM CG5644	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	5494618	2L_5494618_SNP [dm3] 2L_5494618_SNP [dm6]	G	A	4.013e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8821049	3R_8821049_SNP [dm3] 3R_12995327_SNP [dm6]	C	T	4.018e^-4	0.794	UPSTREAM CG7488 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8961494	3L_8961494_SNP [dm3] 3L_8968394_SNP [dm6]	G	A	4.020e^-4	0.794	UPSTREAM CG5026 DOWNSTREAM CG5021 INTERGENIC
3L	5280723	3L_5280723_SNP [dm3] 3L_5287623_SNP [dm6]	A	G	4.022e^-4	0.794	INTERGENIC
2R	9201054	2R_9201054_SNP [dm3] 2R_13313549_SNP [dm6]	C	G	4.026e^-4	0.794	INTERGENIC
2L	14894064	2L_14894064_SNP [dm3] 2L_14894064_SNP [dm6]	C	T	4.036e^-4	0.794	INTERGENIC
3R	27207454	3R_27207454_SNP [dm3] 3R_31381732_SNP [dm6]	T	G	4.040e^-4	0.794	UPSTREAM CG1607 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	4340871	2L_4340871_SNP [dm3] 2L_4340871_SNP [dm6]	A	G	4.048e^-4	0.794	INTRON Atet
3L	6764513	3L_6764513_SNP [dm3] 3L_6771413_SNP [dm6]	C	G	4.052e^-4	0.794	INTERGENIC
3R	22713571	3R_22713571_SNP [dm3] 3R_26887849_SNP [dm6]	C	T	4.058e^-4	0.794	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16437975	2R_16437975_SNP [dm3] 2R_20550470_SNP [dm6]	T	A	4.062e^-4	0.794	UTR_3_PRIME CG13430 & 1 other UPSTREAM Cpr57A & 1 other	regulatory region REDfly_CRMs
2L	7919754	2L_7919754_SNP [dm3] 2L_7919754_SNP [dm6]	A	T	4.063e^-4	0.794	INTRON Snoo
2L	5532748	2L_5532748_SNP [dm3] 2L_5532748_SNP [dm6]	A	G	4.070e^-4	0.794	SYNONYMOUS_CODING Cap-D3 UPSTREAM CG7277	TF binding site mE1_TFBS_cad
X	14340821	X_14340821_SNP [dm3] X_14446788_SNP [dm6]	T	C	4.072e^-4	0.794	INTRON dpr8
3L	8961360	3L_8961360_SNP [dm3] 3L_8968260_SNP [dm6]	A	C	4.083e^-4	0.794	UPSTREAM CG5026 DOWNSTREAM CG5021 INTERGENIC
3L	6025680	3L_6025680_SNP [dm3] 3L_6032580_SNP [dm6]	A	C	4.085e^-4	0.794	DOWNSTREAM CG10477 INTERGENIC
X	4688569	X_4688569_DEL [dm3] X_4794536_DEL [dm6]	GT	G	4.093e^-4	0.794	INTERGENIC
3R	3286395	3R_3286395_SNP [dm3] 3R_7460673_SNP [dm6]	C	G	4.093e^-4	0.794	INTERGENIC
2L	16622865	2L_16622865_DEL [dm3] 2L_16622865_DEL [dm6]	AAA	A	4.095e^-4	0.794	INTRON CG42389	TF binding site mE1_TFBS_chinmo
3L	9450796	3L_9450796_SNP [dm3] 3L_9457696_SNP [dm6]	C	A	4.099e^-4	0.794	UPSTREAM CG3552 & 1 other INTRON CG3552	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	24039947	3R_24039947_SNP [dm3] 3R_28214225_SNP [dm6]	C	T	4.100e^-4	0.794	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19880811	X_19880811_INS [dm3] X_19986778_INS [dm6]	G	GTGC	4.124e^-4	0.794	INTERGENIC
3L	8982274	3L_8982274_SNP [dm3] 3L_8989174_SNP [dm6]	A	G	4.131e^-4	0.794	UTR_3_PRIME CG5280 DOWNSTREAM CG5068
2L	13031433	2L_13031433_SNP [dm3] 2L_13031433_SNP [dm6]	C	G	4.131e^-4	0.794	INTRON CG9932	TF binding site mE1_TFBS_cad
2R	5589429	2R_5589429_SNP [dm3] 2R_9701924_SNP [dm6]	G	A	4.138e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5280751	3L_5280751_SNP [dm3] 3L_5287651_SNP [dm6]	A	T	4.143e^-4	0.794	INTERGENIC
2L	4199591	2L_4199591_SNP [dm3] 2L_4199591_SNP [dm6]	G	A	4.152e^-4	0.794	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	16994385	3R_16994385_SNP [dm3] 3R_21168663_SNP [dm6]	G	A	4.156e^-4	0.794	UPSTREAM Snmp1 INTRON SNF4Agamma
3R	25533467	3R_25533467_SNP [dm3] 3R_29707745_SNP [dm6]	C	T	4.158e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14537086	X_14537086_SNP [dm3] X_14643053_SNP [dm6]	T	C	4.160e^-4	0.794	INTRON NetA
3L	4237952	3L_4237952_INS [dm3] 3L_4237952_INS [dm6]	T	TGGCCTGGTGGC...	4.164e^-4	0.794	INTERGENIC
X	19799137	X_19799137_INS [dm3] X_19905104_INS [dm6]	G	GATGGCA	4.167e^-4	0.794	UTR_3_PRIME Hers
3L	17429503	3L_17429503_SNP [dm3] 3L_17436403_SNP [dm6]	A	G	4.170e^-4	0.794	UTR_5_PRIME CG12229 INTRON CG32176
2R	19256790	2R_19256790_SNP [dm3] 2R_23369267_SNP [dm6]	G	A	4.171e^-4	0.794	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
2R	18058253	2R_18058253_SNP [dm3] 2R_22170748_SNP [dm6]	C	T	4.180e^-4	0.794	INTRON a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18694502	2L_18694502_SNP [dm3] 2L_18694502_SNP [dm6]	A	G	4.185e^-4	0.794	INTRON CG10383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_ttk
2R	19224896	2R_19224896_SNP [dm3] 2R_23337373_SNP [dm6]	A	G	4.186e^-4	0.794	INTERGENIC
3R	4767052	3R_4767052_INS [dm3] 3R_8941330_INS [dm6]	A	AT	4.187e^-4	0.794	INTRON skap	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10027262	2L_10027262_SNP [dm3] 2L_10027262_SNP [dm6]	G	A	4.192e^-4	0.794	SYNONYMOUS_CODING CG13127
X	13038822	X_13038822_SNP [dm3] X_13144789_SNP [dm6]	A	C	4.192e^-4	0.794	INTRON CG32645
3L	5280721	3L_5280721_INS [dm3] 3L_5287621_INS [dm6]	A	AACA	4.199e^-4	0.794	INTERGENIC
3L	5280734	3L_5280734_SNP [dm3] 3L_5287634_SNP [dm6]	T	G	4.199e^-4	0.794	INTERGENIC
3L	3162140	3L_3162140_SNP [dm3] 3L_3162140_SNP [dm6]	T	C	4.213e^-4	0.794	UPSTREAM rasp DOWNSTREAM pfk INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9250937	2L_9250937_SNP [dm3] 2L_9250937_SNP [dm6]	G	T	4.213e^-4	0.794	SYNONYMOUS_CODING aust DOWNSTREAM CR43734 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17143473	3R_17143473_SNP [dm3] 3R_21317751_SNP [dm6]	A	C	4.214e^-4	0.794	DOWNSTREAM mir-4951 & 1 other EXON Hsromega
3L	2513771	3L_2513771_SNP [dm3] 3L_2513771_SNP [dm6]	A	G	4.216e^-4	0.794	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	683988	2L_683988_SNP [dm3] 2L_683988_SNP [dm6]	G	T	4.219e^-4	0.794	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	683989	2L_683989_SNP [dm3] 2L_683989_SNP [dm6]	T	A	4.219e^-4	0.794	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24618383	3R_24618383_SNP [dm3] 3R_28792661_SNP [dm6]	C	A	4.221e^-4	0.794	INTERGENIC
3L	11102960	3L_11102960_SNP [dm3] 3L_11109860_SNP [dm6]	G	A	4.227e^-4	0.794	UPSTREAM CG34012 INTRON CG7638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7561484	2R_7561484_SNP [dm3] 2R_11673979_SNP [dm6]	G	T	4.239e^-4	0.794	SYNONYMOUS_CODING Tret1-1 INTRON Roc2
2R	12445661	2R_12445661_SNP [dm3] 2R_16558156_SNP [dm6]	T	C	4.240e^-4	0.794	UTR_3_PRIME Syn2 DOWNSTREAM DAT
2R	10332244	2R_10332244_SNP [dm3] 2R_14444739_SNP [dm6]	T	G	4.249e^-4	0.794	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	24926441	3R_24926441_SNP [dm3] 3R_29100719_SNP [dm6]	C	A	4.252e^-4	0.794	NON_SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16332928	2L_16332928_SNP [dm3] 2L_16332928_SNP [dm6]	C	T	4.259e^-4	0.794	NON_SYNONYMOUS_CODING CG31817
X	20341562	X_20341562_DEL [dm3] X_20470535_DEL [dm6]	TG	T	4.262e^-4	0.794	UTR_3_PRIME RhoGAP19D DOWNSTREAM GstT3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9367749	3L_9367749_SNP [dm3] 3L_9374649_SNP [dm6]	C	T	4.279e^-4	0.794	SYNONYMOUS_CODING Hsp22 UTR_3_PRIME Hsp67Bb UPSTREAM CG4461 DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	23710693	3R_23710693_SNP [dm3] 3R_27884971_SNP [dm6]	C	G	4.286e^-4	0.794	INTRON CG34353
X	13054487	X_13054487_SNP [dm3] X_13160454_SNP [dm6]	C	T	4.293e^-4	0.794	NON_SYNONYMOUS_CODING CG12096 UPSTREAM Bap60	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	16774017	2R_16774017_SNP [dm3] 2R_20886512_SNP [dm6]	T	G	4.294e^-4	0.794	INTRON otp
3L	7998648	3L_7998648_SNP [dm3] 3L_8005548_SNP [dm6]	C	G	4.295e^-4	0.794	INTRON nmo	TF binding site BDTNP1_TFBS_dl
3L	18093689	3L_18093689_SNP [dm3] 3L_18100589_SNP [dm6]	T	C	4.308e^-4	0.794	INTRON CG13698
X	16593111	X_16593111_DEL [dm3] X_16699078_DEL [dm6]	AT	A	4.312e^-4	0.794	DOWNSTREAM CG9676 INTRON CG4678
3L	1187918	3L_1187918_SNP [dm3] 3L_1187918_SNP [dm6]	G	A	4.315e^-4	0.794	INTERGENIC
2R	13763048	2R_13763048_SNP [dm3] 2R_17875543_SNP [dm6]	T	A	4.329e^-4	0.794	INTRON Elk
3L	16175647	3L_16175647_SNP [dm3] 3L_16182547_SNP [dm6]	T	C	4.330e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8886952	3L_8886952_SNP [dm3] 3L_8893852_SNP [dm6]	G	A	4.335e^-4	0.794	SYNONYMOUS_CODING Mcm7 DOWNSTREAM TrpA1	TF binding site mE1_TFBS_sens
2R	14966072	2R_14966072_SNP [dm3] 2R_19078567_SNP [dm6]	A	G	4.338e^-4	0.794	INTRON 5-HT1A
3L	5044097	3L_5044097_SNP [dm3] 3L_5044097_SNP [dm6]	C	A	4.341e^-4	0.794	INTRON Con
2L	9207435	2L_9207435_SNP [dm3] 2L_9207435_SNP [dm6]	T	C	4.341e^-4	0.794	INTRON tai
X	18643307	X_18643307_SNP [dm3] X_18749274_SNP [dm6]	C	G	4.356e^-4	0.794	UPSTREAM CG12609 INTERGENIC
X	18643309	X_18643309_SNP [dm3] X_18749276_SNP [dm6]	C	G	4.356e^-4	0.794	UPSTREAM CG12609 INTERGENIC
X	8974678	X_8974678_SNP [dm3] X_9080645_SNP [dm6]	T	C	4.364e^-4	0.794	SYNONYMOUS_CODING CG7246 UPSTREAM HP1b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	7478578	X_7478578_SNP [dm3] X_7584545_SNP [dm6]	G	A	4.367e^-4	0.794	DOWNSTREAM CG12689 INTERGENIC	regulatory region REDfly_CRMs
2L	5532196	2L_5532196_SNP [dm3] 2L_5532196_SNP [dm6]	G	T	4.369e^-4	0.794	UTR_5_PRIME CG7277 INTRON Cap-D3	TF binding site mE1_TFBS_cad
3R	24454231	3R_24454231_SNP [dm3] 3R_28628509_SNP [dm6]	G	T	4.371e^-4	0.794	INTRON CG10011
3L	11316813	3L_11316813_SNP [dm3] 3L_11323713_SNP [dm6]	G	C	4.373e^-4	0.794	DOWNSTREAM CR44723 EXON CR44721 & 1 other
2L	7070372	2L_7070372_SNP [dm3] 2L_7070372_SNP [dm6]	G	A	4.379e^-4	0.794	DOWNSTREAM CG11289 INTRON Pvf2	TF binding site mE1_TFBS_cad
2L	7900683	2L_7900683_DEL [dm3] 2L_7900683_DEL [dm6]	TT	T	4.381e^-4	0.794	INTRON Snoo
3L	1813302	3L_1813302_SNP [dm3] 3L_1813302_SNP [dm6]	C	T	4.382e^-4	0.794	INTRON GV1
3R	22777874	3R_22777874_SNP [dm3] 3R_26952152_SNP [dm6]	G	A	4.389e^-4	0.794	INTRON CG6330	TF binding site BDTNP1_TFBS_da
3L	18836515	3L_18836515_SNP [dm3] 3L_18843415_SNP [dm6]	G	A	4.390e^-4	0.794	DOWNSTREAM CR32027 INTRON Indy
3L	20607547	3L_20607547_SNP [dm3] 3L_20614447_SNP [dm6]	A	G	4.396e^-4	0.794	INTRON knrl
3L	8835006	3L_8835006_DEL [dm3] 3L_8841906_DEL [dm6]	CCACTAC	C	4.397e^-4	0.794	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25996519	3R_25996519_SNP [dm3] 3R_30170797_SNP [dm6]	G	T	4.407e^-4	0.794	DOWNSTREAM Mlc2 INTRON CG31028	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	16052723	3L_16052723_SNP [dm3] 3L_16059623_SNP [dm6]	C	A	4.409e^-4	0.794	INTRON Mbs
2R	16542287	2R_16542287_SNP [dm3] 2R_20654782_SNP [dm6]	T	C	4.411e^-4	0.794	DOWNSTREAM CG11159 INTRON Lrt & 1 other
3L	8961370	3L_8961370_SNP [dm3] 3L_8968270_SNP [dm6]	G	C	4.411e^-4	0.794	UPSTREAM CG5026 DOWNSTREAM CG5021 INTERGENIC
2L	12949594	2L_12949594_SNP [dm3] 2L_12949594_SNP [dm6]	A	G	4.412e^-4	0.794	INTERGENIC
2R	14582539	2R_14582539_SNP [dm3] 2R_18695034_SNP [dm6]	G	T	4.417e^-4	0.794	INTRON Sik3	TF binding site BDTNP1_TFBS_dl
X	13664091	X_13664091_SNP [dm3] X_13770058_SNP [dm6]	T	C	4.419e^-4	0.794	SYNONYMOUS_CODING rdgB
2L	4340831	2L_4340831_DEL [dm3] 2L_4340831_DEL [dm6]	AC	A	4.425e^-4	0.794	INTRON Atet
2L	4340845	2L_4340845_SNP [dm3] 2L_4340845_SNP [dm6]	T	A	4.425e^-4	0.794	INTRON Atet
3R	27141972	3R_27141972_SNP [dm3] 3R_31316250_SNP [dm6]	T	G	4.427e^-4	0.794	INTRON CG34347
2R	15183087	2R_15183087_SNP [dm3] 2R_19295582_SNP [dm6]	T	C	4.439e^-4	0.794	INTRON Tab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2483881	2L_2483881_DEL [dm3] 2L_2483881_DEL [dm6]	ACACACA	A	4.446e^-4	0.794	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad

By genomic position
Variant impact
Gene name

W2 Vial 1 ascension (cm) phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results