DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.735e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.06516

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	5.3699	0.0682

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1914 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	21280862	X_21280862_INS [dm3] X_21409835_INS [dm6]	G	GG	4.315e^-7	0.809	EXON CR45003
3R	23799951	3R_23799951_SNP [dm3] 3R_27974229_SNP [dm6]	C	G	1.514e^-6	0.917	SYNONYMOUS_CODING betaTub97EF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5649544	2R_5649544_SNP [dm3] 2R_9762039_SNP [dm6]	T	C	2.097e^-6	0.917	SPLICE_SITE_REGION trpl INTRON trpl	TF binding site mE1_TFBS_cad
3R	23494766	3R_23494766_SNP [dm3] 3R_27669044_SNP [dm6]	G	A	2.739e^-6	0.917	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21280854	X_21280854_SNP [dm3] X_21409827_SNP [dm6]	T	C	3.199e^-6	0.917	EXON CR45003
3R	10171644	3R_10171644_SNP [dm3] 3R_14345922_SNP [dm6]	C	A	4.107e^-6	0.917	INTRON NK7.1
3R	10409395	3R_10409395_SNP [dm3] 3R_14583673_SNP [dm6]	T	C	4.891e^-6	0.917	INTRON stumps
2L	12281930	2L_12281930_SNP [dm3] 2L_12281930_SNP [dm6]	T	C	5.277e^-6	0.917	INTRON aret
3L	683252	3L_683252_SNP [dm3] 3L_683252_SNP [dm6]	G	T	6.255e^-6	0.917	SYNONYMOUS_CODING ebd1 UPSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6968839	2L_6968839_SNP [dm3] 2L_6968839_SNP [dm6]	G	A	7.223e^-6	0.917	UTR_3_PRIME snRNP-U1-70K DOWNSTREAM snRNP-U1-70K	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	21902872	X_21902872_SNP [dm3] X_22501036_SNP [dm6]	T	A	7.578e^-6	0.917	NON_SYNONYMOUS_CODING l_1_G0196 INTRON l_1_G0196
2L	7495110	2L_7495110_SNP [dm3] 2L_7495110_SNP [dm6]	A	C	7.601e^-6	0.917	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16955833	2L_16955833_SNP [dm3] 2L_16955833_SNP [dm6]	T	G	7.968e^-6	0.917	INTERGENIC
2R	16549085	2R_16549085_SNP [dm3] 2R_20661580_SNP [dm6]	C	G	8.409e^-6	0.917	UPSTREAM CG13437 DOWNSTREAM Lrt & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	17941991	3R_17941991_SNP [dm3] 3R_22116269_SNP [dm6]	A	G	8.435e^-6	0.917	SYNONYMOUS_CODING Ir94b
2L	6965613	2L_6965613_SNP [dm3] 2L_6965613_SNP [dm6]	G	A	9.171e^-6	0.917	SYNONYMOUS_CODING Coprox	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	21280957	X_21280957_SNP [dm3] X_21409930_SNP [dm6]	T	C	1.051e^-5	0.917	SPLICE_SITE_REGION CR45003 EXON CR45003
2L	6969567	2L_6969567_SNP [dm3] 2L_6969567_SNP [dm6]	C	A	1.075e^-5	0.917	UTR_3_PRIME snRNP-U1-70K DOWNSTREAM snRNP-U1-70K	TF binding site mE1_TFBS_sens
2L	6968350	2L_6968350_SNP [dm3] 2L_6968350_SNP [dm6]	G	A	1.080e^-5	0.917	UPSTREAM smt3 DOWNSTREAM snRNP-U1-70K INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	8989513	2L_8989513_SNP [dm3] 2L_8989513_SNP [dm6]	G	C	1.114e^-5	0.917	UTR_5_PRIME rost UPSTREAM rost
3L	19524744	3L_19524744_SNP [dm3] 3L_19531644_SNP [dm6]	A	T	1.180e^-5	0.917	INTERGENIC
3L	13385094	3L_13385094_SNP [dm3] 3L_13391994_SNP [dm6]	C	G	1.191e^-5	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16880183	3R_16880183_SNP [dm3] 3R_21054461_SNP [dm6]	A	G	1.226e^-5	0.917	DOWNSTREAM Mvl INTRON Mvl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23003397	3R_23003397_SNP [dm3] 3R_27177675_SNP [dm6]	C	A	1.270e^-5	0.917	INTRON Ser	TF binding site mE1_TFBS_cad
X	3731271	X_3731271_SNP [dm3] X_3837238_SNP [dm6]	T	C	1.345e^-5	0.917	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	11659510	X_11659510_SNP [dm3] X_11765477_SNP [dm6]	C	G	1.361e^-5	0.917	UPSTREAM CG9360 INTRON m	TF binding site mE1_TFBS_cnc
X	21282846	X_21282846_SNP [dm3] X_21411819_SNP [dm6]	G	C	1.406e^-5	0.917	INTERGENIC
2R	17396974	2R_17396974_SNP [dm3] 2R_21509469_SNP [dm6]	G	A	1.474e^-5	0.917	INTRON MESK2
X	14757014	X_14757014_SNP [dm3] X_14862981_SNP [dm6]	T	G	1.677e^-5	0.917	DOWNSTREAM CG9518 INTRON Flo2
3R	19901238	3R_19901238_SNP [dm3] 3R_24075516_SNP [dm6]	C	A	1.682e^-5	0.917	INTRON 4EHP
3L	13365418	3L_13365418_SNP [dm3] 3L_13372318_SNP [dm6]	G	A	1.713e^-5	0.917	INTERGENIC
2L	7498096	2L_7498096_SNP [dm3] 2L_7498096_SNP [dm6]	A	T	1.728e^-5	0.917	UTR_3_PRIME RapGAP1 UPSTREAM Obp28a
3L	683279	3L_683279_SNP [dm3] 3L_683279_SNP [dm6]	C	G	1.767e^-5	0.917	NON_SYNONYMOUS_CODING ebd1 UPSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7373651	2L_7373651_DEL [dm3] 2L_7373651_DEL [dm6]	GAGATCGGG	G	1.782e^-5	0.917	INTRON Wnt10	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3292704	3L_3292704_SNP [dm3] 3L_3292704_SNP [dm6]	G	A	1.868e^-5	0.917	INTRON CG12009
2L	549912	2L_549912_SNP [dm3] 2L_549912_SNP [dm6]	T	C	1.921e^-5	0.917	UPSTREAM Ets21C INTRON Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23003428	3R_23003428_SNP [dm3] 3R_27177706_SNP [dm6]	A	C	1.933e^-5	0.917	INTRON Ser	TF binding site mE1_TFBS_cad
3L	22540042	3L_22540042_SNP [dm3] 3L_22546942_SNP [dm6]	T	A	1.935e^-5	0.917	INTERGENIC
X	14757015	X_14757015_SNP [dm3] X_14862982_SNP [dm6]	T	C	1.979e^-5	0.917	DOWNSTREAM CG9518 INTRON Flo2
3R	23494660	3R_23494660_SNP [dm3] 3R_27668938_SNP [dm6]	C	T	1.985e^-5	0.917	INTRON unc80	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4565614	3L_4565614_SNP [dm3] 3L_4565614_SNP [dm6]	A	G	2.005e^-5	0.917	INTRON CG42540	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10413110	3R_10413110_INS [dm3] 3R_14587388_INS [dm6]	T	TAATGT	2.210e^-5	0.933	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21280814	X_21280814_SNP [dm3] X_21409787_SNP [dm6]	A	G	2.353e^-5	0.933	EXON CR45003
3R	26713324	3R_26713324_SNP [dm3] 3R_30887602_SNP [dm6]	T	A	2.415e^-5	0.933	INTRON Sap-r
3R	25624104	3R_25624104_SNP [dm3] 3R_29798382_SNP [dm6]	A	G	2.415e^-5	0.933	SYNONYMOUS_CODING CG7837	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8347780	2L_8347780_SNP [dm3] 2L_8347780_SNP [dm6]	G	T	2.434e^-5	0.933	INTRON CG7778
3L	12157902	3L_12157902_SNP [dm3] 3L_12164802_SNP [dm6]	T	A	2.537e^-5	0.933	UTR_3_PRIME Rh7
2R	5663854	2R_5663854_DEL [dm3] 2R_9776349_DEL [dm6]	ATAATAATTTTCTA...	A	2.551e^-5	0.933	INTRON CG1688 EXON CR44207
3R	10172068	3R_10172068_SNP [dm3] 3R_14346346_SNP [dm6]	A	G	2.563e^-5	0.933	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14278150	2L_14278150_SNP [dm3] 2L_14278150_SNP [dm6]	A	T	2.564e^-5	0.933	DOWNSTREAM CG32971 INTRON wb
3R	26729549	3R_26729549_SNP [dm3] 3R_30903827_SNP [dm6]	G	A	2.623e^-5	0.933	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	17658807	X_17658807_SNP [dm3] X_17764774_SNP [dm6]	C	G	2.634e^-5	0.933	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22055432	X_22055432_SNP [dm3] X_22653596_SNP [dm6]	C	G	2.635e^-5	0.933	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19524747	3L_19524747_SNP [dm3] 3L_19531647_SNP [dm6]	G	A	2.698e^-5	0.937	INTERGENIC
3R	19964611	3R_19964611_SNP [dm3] 3R_24138889_SNP [dm6]	C	A	2.813e^-5	0.94	INTRON Npc2f	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17943965	3R_17943965_SNP [dm3] 3R_22118243_SNP [dm6]	G	A	2.879e^-5	0.94	SYNONYMOUS_CODING Ir94c UPSTREAM Ir94b
2L	13081656	2L_13081656_SNP [dm3] 2L_13081656_SNP [dm6]	T	G	2.917e^-5	0.94	INTERGENIC
3R	23003416	3R_23003416_DEL [dm3] 3R_27177694_DEL [dm6]	ATA	A	2.961e^-5	0.94	INTRON Ser	TF binding site mE1_TFBS_cad
3R	23003431	3R_23003431_SNP [dm3] 3R_27177709_SNP [dm6]	T	G	2.961e^-5	0.94	INTRON Ser	TF binding site mE1_TFBS_cad
X	19099065	X_19099065_SNP [dm3] X_19205032_SNP [dm6]	G	A	3.101e^-5	0.94	INTRON Ulp1
3R	23003446	3R_23003446_SNP [dm3] 3R_27177724_SNP [dm6]	A	T	3.269e^-5	0.94	INTRON Ser	TF binding site mE1_TFBS_cad
2L	777869	2L_777869_SNP [dm3] 2L_777869_SNP [dm6]	C	T	3.277e^-5	0.94	DOWNSTREAM CG13946 INTERGENIC
3R	20493348	3R_20493348_SNP [dm3] 3R_24667626_SNP [dm6]	C	T	3.523e^-5	0.94	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
3L	3800564	3L_3800564_SNP [dm3] 3L_3800564_SNP [dm6]	A	G	3.534e^-5	0.94	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10172974	3R_10172974_INS [dm3] 3R_14347252_INS [dm6]	G	GAG	3.556e^-5	0.94	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6965902	2L_6965902_SNP [dm3] 2L_6965902_SNP [dm6]	A	T	3.604e^-5	0.94	DOWNSTREAM smt3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	7453397	2L_7453397_SNP [dm3] 2L_7453397_SNP [dm6]	G	T	3.653e^-5	0.94	INTRON Gr28a
3L	3907783	3L_3907783_DEL [dm3] 3L_3907783_DEL [dm6]	TT	T	3.696e^-5	0.94	UTR_3_PRIME ida DOWNSTREAM mge
3R	21033739	3R_21033739_SNP [dm3] 3R_25208017_SNP [dm6]	G	A	3.706e^-5	0.94	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2105746	3L_2105746_SNP [dm3] 3L_2105746_SNP [dm6]	A	G	3.758e^-5	0.94	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18781527	3L_18781527_SNP [dm3] 3L_18788427_SNP [dm6]	C	T	3.782e^-5	0.94	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	22540043	3L_22540043_SNP [dm3] 3L_22546943_SNP [dm6]	C	T	3.899e^-5	0.94	INTERGENIC
3R	26723629	3R_26723629_SNP [dm3] 3R_30897907_SNP [dm6]	C	G	3.899e^-5	0.94	NON_SYNONYMOUS_CODING Cyp4c3
3R	10492726	3R_10492726_SNP [dm3] 3R_14667004_SNP [dm6]	A	G	3.944e^-5	0.94	SYNONYMOUS_CODING Meltrin DOWNSTREAM Meltrin	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21126037	3R_21126037_SNP [dm3] 3R_25300315_SNP [dm6]	G	T	3.959e^-5	0.94	UPSTREAM CG31288 & 1 other INTERGENIC
3L	15391612	3L_15391612_SNP [dm3] 3L_15398512_SNP [dm6]	A	G	3.977e^-5	0.94	INTERGENIC
3R	17943956	3R_17943956_SNP [dm3] 3R_22118234_SNP [dm6]	C	T	4.006e^-5	0.94	SYNONYMOUS_CODING Ir94c UPSTREAM Ir94b
3L	16605774	3L_16605774_SNP [dm3] 3L_16612674_SNP [dm6]	G	T	4.116e^-5	0.94	SYNONYMOUS_CODING CG4101 UPSTREAM Su_P_ DOWNSTREAM Mo25	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
X	22055499	X_22055499_SNP [dm3] X_22653663_SNP [dm6]	A	C	4.124e^-5	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23263751	3R_23263751_SNP [dm3] 3R_27438029_SNP [dm6]	G	A	4.208e^-5	0.94	UPSTREAM side DOWNSTREAM CG44290 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19347489	3L_19347489_SNP [dm3] 3L_19354389_SNP [dm6]	G	T	4.259e^-5	0.94	INTRON CG32206
3R	23003425	3R_23003425_SNP [dm3] 3R_27177703_SNP [dm6]	T	C	4.440e^-5	0.94	INTRON Ser	TF binding site mE1_TFBS_cad
X	8714909	X_8714909_DEL [dm3] X_8820876_DEL [dm6]	CC	C	4.503e^-5	0.94	INTERGENIC
2R	16023742	2R_16023742_SNP [dm3] 2R_20136237_SNP [dm6]	G	C	4.694e^-5	0.94	DOWNSTREAM CR44634 INTERGENIC
3L	682872	3L_682872_SNP [dm3] 3L_682872_SNP [dm6]	T	A	4.703e^-5	0.94	UPSTREAM CG3386 DOWNSTREAM ebd1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	12021444	X_12021444_SNP [dm3] X_12127411_SNP [dm6]	G	A	4.723e^-5	0.94	UPSTREAM Ten-a INTRON Ten-a
3R	17031798	3R_17031798_DEL [dm3] 3R_21206076_DEL [dm6]	GGAGTTGTATAATATATGTC...	T	4.745e^-5	0.94	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	19901147	3R_19901147_SNP [dm3] 3R_24075425_SNP [dm6]	G	A	4.879e^-5	0.94	INTRON 4EHP
2R	13074576	2R_13074576_SNP [dm3] 2R_17187071_SNP [dm6]	C	A	4.894e^-5	0.94	DOWNSTREAM CR44388 INTERGENIC	TF binding site BDTNP1_TFBS_z
X	13809632	X_13809632_SNP [dm3] X_13915599_SNP [dm6]	T	C	4.961e^-5	0.94	INTRON mamo
3R	23799635	3R_23799635_SNP [dm3] 3R_27973913_SNP [dm6]	C	T	4.986e^-5	0.94	INTRON betaTub97EF
2L	12153175	2L_12153175_SNP [dm3] 2L_12153175_SNP [dm6]	A	G	5.050e^-5	0.94	INTRON CG31760
3R	10997129	3R_10997129_SNP [dm3] 3R_15171407_SNP [dm6]	T	G	5.067e^-5	0.94	INTRON Gyc88E & 1 other
X	21280848	X_21280848_SNP [dm3] X_21409821_SNP [dm6]	G	A	5.076e^-5	0.94	EXON CR45003
3R	18252843	3R_18252843_SNP [dm3] 3R_22427121_SNP [dm6]	A	G	5.128e^-5	0.94	SYNONYMOUS_CODING CG13847	TF binding site mE1_TFBS_chinmo
3L	18866643	3L_18866643_SNP [dm3] 3L_18873543_SNP [dm6]	C	T	5.170e^-5	0.94	SYNONYMOUS_CODING Ugt UPSTREAM Rad9	TF binding site mE1_TFBS_sens
2R	2709554	2R_2709554_SNP [dm3] 2R_6822049_SNP [dm6]	T	A	5.189e^-5	0.94	EXON CR44442
2L	6965897	2L_6965897_SNP [dm3] 2L_6965897_SNP [dm6]	G	A	5.307e^-5	0.94	DOWNSTREAM smt3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	106859	2L_106859_SNP [dm3] 2L_106859_SNP [dm6]	A	G	5.379e^-5	0.94	UPSTREAM Sam-S & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	3860164	X_3860164_SNP [dm3] X_3966131_SNP [dm6]	A	G	5.399e^-5	0.94	SYNONYMOUS_CODING CG6428 UPSTREAM lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	2083804	3L_2083804_SNP [dm3] 3L_2083804_SNP [dm6]	C	T	5.436e^-5	0.94	NON_SYNONYMOUS_CODING sls INTRON sls
3L	2053550	3L_2053550_SNP [dm3] 3L_2053550_SNP [dm6]	C	T	5.555e^-5	0.94	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_sens
3L	18866607	3L_18866607_SNP [dm3] 3L_18873507_SNP [dm6]	G	A	5.574e^-5	0.94	SYNONYMOUS_CODING Ugt UPSTREAM Rad9	TF binding site mE1_TFBS_sens
3R	18034919	3R_18034919_SNP [dm3] 3R_22209197_SNP [dm6]	G	A	5.578e^-5	0.94	INTRON SKIP EXON CR45224
2L	7495756	2L_7495756_DEL [dm3] 2L_7495756_DEL [dm6]	CGCACACAC	C	5.711e^-5	0.94	UTR_5_PRIME Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1176207	2L_1176207_SNP [dm3] 2L_1176207_SNP [dm6]	C	T	5.716e^-5	0.94	SYNONYMOUS_CODING CG4887	TF binding site BDTNP1_TFBS_sna
2R	17396979	2R_17396979_SNP [dm3] 2R_21509474_SNP [dm6]	T	C	5.769e^-5	0.94	INTRON MESK2
3L	18866634	3L_18866634_SNP [dm3] 3L_18873534_SNP [dm6]	T	C	5.858e^-5	0.94	SYNONYMOUS_CODING Ugt UPSTREAM Rad9	TF binding site mE1_TFBS_sens
3L	3907849	3L_3907849_SNP [dm3] 3L_3907849_SNP [dm6]	A	G	5.937e^-5	0.94	DOWNSTREAM mge & 1 other INTERGENIC
X	1834381	X_1834381_SNP [dm3] X_1940348_SNP [dm6]	A	G	5.950e^-5	0.94	UTR_5_PRIME CG3587 UPSTREAM CG3857	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
3R	23205799	3R_23205799_SNP [dm3] 3R_27380077_SNP [dm6]	C	T	5.991e^-5	0.94	UTR_3_PRIME side INTRON side
3L	16606089	3L_16606089_SNP [dm3] 3L_16612989_SNP [dm6]	G	A	6.029e^-5	0.94	UPSTREAM Su_P_ DOWNSTREAM Mo25 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4565609	3L_4565609_SNP [dm3] 3L_4565609_SNP [dm6]	A	T	6.084e^-5	0.94	INTRON CG42540	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14366729	2L_14366729_SNP [dm3] 2L_14366729_SNP [dm6]	G	A	6.120e^-5	0.94	UTR_3_PRIME spel1	TF binding site mE1_TFBS_cad
3L	16617880	3L_16617880_SNP [dm3] 3L_16624780_SNP [dm6]	C	T	6.215e^-5	0.94	NON_SYNONYMOUS_CODING Abl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9090609	X_9090609_SNP [dm3] X_9196576_SNP [dm6]	A	T	6.526e^-5	0.94	UPSTREAM CG12118 DOWNSTREAM su_r_ INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16550272	3L_16550272_SNP [dm3] 3L_16557172_SNP [dm6]	C	A	6.534e^-5	0.94	SYNONYMOUS_CODING CG4229	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20970805	3R_20970805_SNP [dm3] 3R_25145083_SNP [dm6]	A	G	6.561e^-5	0.94	INTERGENIC
2L	3261061	2L_3261061_SNP [dm3] 2L_3261061_SNP [dm6]	A	T	6.658e^-5	0.94	DOWNSTREAM CR45338 EXON CR45337
2R	16023836	2R_16023836_SNP [dm3] 2R_20136331_SNP [dm6]	T	C	6.700e^-5	0.94	DOWNSTREAM CR44634 INTERGENIC
X	3011817	X_3011817_SNP [dm3] X_3117784_SNP [dm6]	G	T	6.707e^-5	0.94	INTRON kirre	TF binding site BDTNP1_TFBS_dl
X	13809649	X_13809649_SNP [dm3] X_13915616_SNP [dm6]	T	C	6.725e^-5	0.94	INTRON mamo
3R	26713310	3R_26713310_SNP [dm3] 3R_30887588_SNP [dm6]	A	C	6.790e^-5	0.94	INTRON Sap-r
3R	20970980	3R_20970980_SNP [dm3] 3R_25145258_SNP [dm6]	C	A	6.802e^-5	0.94	INTERGENIC
2L	6959202	2L_6959202_SNP [dm3] 2L_6959202_SNP [dm6]	A	G	6.826e^-5	0.94	NON_SYNONYMOUS_CODING Atac1 DOWNSTREAM CG3430
3L	1697340	3L_1697340_SNP [dm3] 3L_1697340_SNP [dm6]	A	G	6.827e^-5	0.94	DOWNSTREAM CG12011 INTRON CG7991
2L	15205484	2L_15205484_SNP [dm3] 2L_15205484_SNP [dm6]	G	A	6.861e^-5	0.94	INTERGENIC
3R	17920080	3R_17920080_SNP [dm3] 3R_22094358_SNP [dm6]	C	T	6.881e^-5	0.94	INTRON CG5778
3R	9651172	3R_9651172_SNP [dm3] 3R_13825450_SNP [dm6]	T	G	6.913e^-5	0.94	INTERGENIC
3R	23766783	3R_23766783_SNP [dm3] 3R_27941061_SNP [dm6]	A	G	7.000e^-5	0.94	SYNONYMOUS_CODING CG5514	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21576743	3R_21576743_SNP [dm3] 3R_25751021_SNP [dm6]	C	G	7.005e^-5	0.94	INTRON LpR1
X	11659597	X_11659597_SNP [dm3] X_11765564_SNP [dm6]	T	A	7.018e^-5	0.94	UPSTREAM CG9360 INTRON m	TF binding site mE1_TFBS_cnc
3L	682852	3L_682852_SNP [dm3] 3L_682852_SNP [dm6]	T	A	7.108e^-5	0.94	UPSTREAM CG3386 DOWNSTREAM ebd1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	12318584	X_12318584_SNP [dm3] X_12424551_SNP [dm6]	C	T	7.126e^-5	0.94	INTERGENIC
2L	169163	2L_169163_SNP [dm3] 2L_169163_SNP [dm6]	A	T	7.273e^-5	0.94	INTRON spen	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18867789	3L_18867789_SNP [dm3] 3L_18874689_SNP [dm6]	T	C	7.302e^-5	0.94	SYNONYMOUS_CODING Ugt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14366731	2L_14366731_SNP [dm3] 2L_14366731_SNP [dm6]	T	A	7.391e^-5	0.94	UTR_3_PRIME spel1	TF binding site mE1_TFBS_cad
X	1822706	X_1822706_SNP [dm3] X_1928673_SNP [dm6]	T	A	7.481e^-5	0.94	INTRON CG11596	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14756804	X_14756804_SNP [dm3] X_14862771_SNP [dm6]	C	A	7.540e^-5	0.94	DOWNSTREAM CG9518 INTRON Flo2
3L	18149858	3L_18149858_SNP [dm3] 3L_18156758_SNP [dm6]	A	G	7.618e^-5	0.94	INTRON CG13699
2R	15667572	2R_15667572_DEL [dm3] 2R_19780067_DEL [dm6]	CAT	C	7.710e^-5	0.94	INTERGENIC
3L	17405321	3L_17405321_SNP [dm3] 3L_17412221_SNP [dm6]	A	T	7.722e^-5	0.94	INTRON blot	TF binding site BDTNP1_TFBS_Med
3L	13365395	3L_13365395_SNP [dm3] 3L_13372295_SNP [dm6]	A	T	7.726e^-5	0.94	INTERGENIC
3L	5764253	3L_5764253_SNP [dm3] 3L_5771153_SNP [dm6]	G	A	7.799e^-5	0.94	UPSTREAM scny INTRON scny	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	6958617	2L_6958617_SNP [dm3] 2L_6958617_SNP [dm6]	C	A	7.880e^-5	0.94	DOWNSTREAM Atac1 INTRON CG3430
3L	13387357	3L_13387357_SNP [dm3] 3L_13394257_SNP [dm6]	C	T	7.942e^-5	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	2666092	3R_2666092_SNP [dm3] 3R_6840370_SNP [dm6]	C	G	7.945e^-5	0.94	INTRON Scr
2R	3662387	2R_3662387_SNP [dm3] 2R_7774882_SNP [dm6]	T	A	8.017e^-5	0.94	INTRON CG30497 & 1 other
2R	14698786	2R_14698786_SNP [dm3] 2R_18811281_SNP [dm6]	T	C	8.026e^-5	0.94	INTRON CG15096
3R	21576757	3R_21576757_SNP [dm3] 3R_25751035_SNP [dm6]	A	T	8.032e^-5	0.94	INTRON LpR1
2L	7493366	2L_7493366_SNP [dm3] 2L_7493366_SNP [dm6]	A	T	8.038e^-5	0.94	INTRON Ziz
3L	8401873	3L_8401873_SNP [dm3] 3L_8408773_SNP [dm6]	C	T	8.070e^-5	0.94	SYNONYMOUS_CODING Oseg1
3R	19901149	3R_19901149_SNP [dm3] 3R_24075427_SNP [dm6]	T	G	8.098e^-5	0.94	INTRON 4EHP
X	21043615	X_21043615_SNP [dm3] X_21172588_SNP [dm6]	A	C	8.123e^-5	0.94	INTERGENIC	transposable element FlyBase
3L	11199406	3L_11199406_SNP [dm3] 3L_11206306_SNP [dm6]	T	C	8.159e^-5	0.94	UPSTREAM Plod DOWNSTREAM Ube3a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8305872	3L_8305872_SNP [dm3] 3L_8312772_SNP [dm6]	A	T	8.268e^-5	0.94	INTRON CG7185	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25030065	3R_25030065_SNP [dm3] 3R_29204343_SNP [dm6]	C	T	8.280e^-5	0.94	UPSTREAM CG14508 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14018583	2R_14018583_SNP [dm3] 2R_18131078_SNP [dm6]	T	A	8.343e^-5	0.94	DOWNSTREAM Dip3 INTRON Hsf
3L	682829	3L_682829_DEL [dm3] 3L_682829_DEL [dm6]	TTAGC	A	8.439e^-5	0.94	UPSTREAM CG3386 DOWNSTREAM ebd1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7496084	2L_7496084_INS [dm3] 2L_7496084_INS [dm6]	T	TTCT	8.511e^-5	0.94	UTR_5_PRIME Ziz DOWNSTREAM Obp28a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22823034	3R_22823034_SNP [dm3] 3R_26997312_SNP [dm6]	C	T	8.512e^-5	0.94	UTR_5_PRIME RYa-R DOWNSTREAM TwdlC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11545284	X_11545284_SNP [dm3] X_11651251_SNP [dm6]	A	C	8.525e^-5	0.94	INTRON Ptp10D
3L	5764579	3L_5764579_SNP [dm3] 3L_5771479_SNP [dm6]	T	C	8.533e^-5	0.94	UTR_5_PRIME scny INTRON scny	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	9441417	2L_9441417_SNP [dm3] 2L_9441417_SNP [dm6]	C	T	8.541e^-5	0.94	UPSTREAM CG33723 INTRON numb
3R	21091862	3R_21091862_SNP [dm3] 3R_25266140_SNP [dm6]	T	C	8.590e^-5	0.94	UPSTREAM Aats-gln DOWNSTREAM CR45214 INTRON RIOK2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5976381	3L_5976381_SNP [dm3] 3L_5983281_SNP [dm6]	G	A	8.715e^-5	0.94	DOWNSTREAM CR45439 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	18866625	3L_18866625_SNP [dm3] 3L_18873525_SNP [dm6]	T	C	8.776e^-5	0.94	SYNONYMOUS_CODING Ugt UPSTREAM Rad9	TF binding site mE1_TFBS_sens
3R	26169857	3R_26169857_INS [dm3] 3R_30344135_INS [dm6]	G	GG	8.919e^-5	0.94	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14634072	2R_14634072_SNP [dm3] 2R_18746567_SNP [dm6]	G	A	9.089e^-5	0.94	INTRON Hs3st-A
X	9119160	X_9119160_SNP [dm3] X_9225127_SNP [dm6]	T	A	9.133e^-5	0.94	UPSTREAM CG15370 INTERGENIC
3R	19125696	3R_19125696_SNP [dm3] 3R_23299974_SNP [dm6]	G	A	9.231e^-5	0.94	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12088603	X_12088603_SNP [dm3] X_12194570_SNP [dm6]	G	A	9.255e^-5	0.94	INTRON Ten-a
2L	1463996	2L_1463996_SNP [dm3] 2L_1463996_SNP [dm6]	T	C	9.268e^-5	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	14278144	2L_14278144_SNP [dm3] 2L_14278144_SNP [dm6]	C	A	9.295e^-5	0.94	DOWNSTREAM CG32971 INTRON wb
3L	11584894	3L_11584894_SNP [dm3] 3L_11591794_SNP [dm6]	A	G	9.333e^-5	0.94	UPSTREAM CG33268 DOWNSTREAM CR45672 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7493342	2L_7493342_SNP [dm3] 2L_7493342_SNP [dm6]	A	T	9.368e^-5	0.94	INTRON Ziz
3L	17405348	3L_17405348_SNP [dm3] 3L_17412248_SNP [dm6]	G	A	9.407e^-5	0.94	INTRON blot	TF binding site BDTNP1_TFBS_Med
3L	18149870	3L_18149870_SNP [dm3] 3L_18156770_SNP [dm6]	C	A	9.419e^-5	0.94	INTRON CG13699
3R	8434772	3R_8434772_SNP [dm3] 3R_12609050_SNP [dm6]	A	T	9.512e^-5	0.94	INTERGENIC
3R	19901315	3R_19901315_SNP [dm3] 3R_24075593_SNP [dm6]	G	C	9.609e^-5	0.94	INTRON 4EHP
2L	6966102	2L_6966102_SNP [dm3] 2L_6966102_SNP [dm6]	A	T	9.633e^-5	0.94	DOWNSTREAM smt3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	20724670	X_20724670_SNP [dm3] X_20853643_SNP [dm6]	G	T	9.650e^-5	0.94	INTRON shakB
3L	11958210	3L_11958210_SNP [dm3] 3L_11965110_SNP [dm6]	G	A	9.709e^-5	0.94	NON_SYNONYMOUS_CODING prc
3L	18132194	3L_18132194_SNP [dm3] 3L_18139094_SNP [dm6]	G	T	9.807e^-5	0.94	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	22055445	X_22055445_SNP [dm3] X_22653609_SNP [dm6]	A	T	9.882e^-5	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10172088	3R_10172088_SNP [dm3] 3R_14346366_SNP [dm6]	A	C	9.920e^-5	0.94	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24103813	3R_24103813_SNP [dm3] 3R_28278091_SNP [dm6]	G	T	9.951e^-5	0.94	INTERGENIC
X	1833593	X_1833593_SNP [dm3] X_1939560_SNP [dm6]	A	G	9.983e^-5	0.94	NON_SYNONYMOUS_CODING CG3857 UPSTREAM CG3587	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26726999	3R_26726999_SNP [dm3] 3R_30901277_SNP [dm6]	C	A	1.002e^-4	0.94	NON_SYNONYMOUS_CODING CG33483 DOWNSTREAM Cyp4c3
2L	7453392	2L_7453392_SNP [dm3] 2L_7453392_SNP [dm6]	T	C	1.004e^-4	0.94	INTRON Gr28a
2L	3303746	2L_3303746_SNP [dm3] 2L_3303746_SNP [dm6]	T	A	1.009e^-4	0.94	UPSTREAM CG3277 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	18344263	X_18344263_SNP [dm3] X_18450230_SNP [dm6]	G	T	1.011e^-4	0.94	INTRON CG32547
2L	7499308	2L_7499308_SNP [dm3] 2L_7499308_SNP [dm6]	T	C	1.031e^-4	0.94	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad
X	8795160	X_8795160_SNP [dm3] X_8901127_SNP [dm6]	A	G	1.032e^-4	0.94	UPSTREAM CG1885 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25802116	3R_25802116_SNP [dm3] 3R_29976394_SNP [dm6]	A	C	1.039e^-4	0.94	INTERGENIC
2L	10976576	2L_10976576_SNP [dm3] 2L_10976576_SNP [dm6]	A	T	1.045e^-4	0.94	UPSTREAM SCAR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	18149861	3L_18149861_SNP [dm3] 3L_18156761_SNP [dm6]	C	T	1.048e^-4	0.94	INTRON CG13699
3R	3344790	3R_3344790_SNP [dm3] 3R_7519068_SNP [dm6]	G	C	1.054e^-4	0.94	SYNONYMOUS_CODING Ubc84D DOWNSTREAM alpha-Est7
2L	16296848	2L_16296848_SNP [dm3] 2L_16296848_SNP [dm6]	T	A	1.064e^-4	0.94	UTR_3_PRIME Cyp303a1 & 1 other DOWNSTREAM Cyp303a1
X	10107875	X_10107875_SNP [dm3] X_10213842_SNP [dm6]	C	T	1.073e^-4	0.94	INTRON l_1_G0230	TF binding site mE1_TFBS_sens
3L	5959756	3L_5959756_SNP [dm3] 3L_5966656_SNP [dm6]	G	A	1.073e^-4	0.94	DOWNSTREAM CG10479 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	18149862	3L_18149862_SNP [dm3] 3L_18156762_SNP [dm6]	A	G	1.089e^-4	0.94	INTRON CG13699
3L	11907388	3L_11907388_SNP [dm3] 3L_11914288_SNP [dm6]	C	A	1.091e^-4	0.94	INTRON CG44837
3R	22698844	3R_22698844_SNP [dm3] 3R_26873122_SNP [dm6]	C	T	1.092e^-4	0.94	UTR_3_PRIME Rb97D DOWNSTREAM Rb97D
2L	3324493	2L_3324493_SNP [dm3] 2L_3324493_SNP [dm6]	C	G	1.097e^-4	0.94	INTRON CG33281
3R	19880061	3R_19880061_SNP [dm3] 3R_24054339_SNP [dm6]	A	C	1.105e^-4	0.94	UPSTREAM CG6000 & 1 other DOWNSTREAM CG5991 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7453394	2L_7453394_SNP [dm3] 2L_7453394_SNP [dm6]	C	A	1.105e^-4	0.94	INTRON Gr28a
2L	18224937	2L_18224937_SNP [dm3] 2L_18224937_SNP [dm6]	A	G	1.106e^-4	0.94	INTRON CG42750
2L	458580	2L_458580_SNP [dm3] 2L_458580_SNP [dm6]	G	A	1.110e^-4	0.94	UTR_3_PRIME CG4133 DOWNSTREAM CG4297	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26169789	3R_26169789_SNP [dm3] 3R_30344067_SNP [dm6]	A	T	1.112e^-4	0.94	INTRON hdc	TF binding site BDTNP1_TFBS_dl
X	9599207	X_9599207_INS [dm3] X_9705174_INS [dm6]	A	AA	1.115e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17237341	X_17237341_SNP [dm3] X_17343308_SNP [dm6]	A	G	1.118e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12363965	X_12363965_SNP [dm3] X_12469932_SNP [dm6]	A	T	1.119e^-4	0.94	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2434573	3L_2434573_SNP [dm3] 3L_2434573_SNP [dm6]	T	C	1.122e^-4	0.94	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6832816	2R_6832816_SNP [dm3] 2R_10945311_SNP [dm6]	A	G	1.124e^-4	0.94	UPSTREAM CR45228 INTERGENIC
3R	6368189	3R_6368189_SNP [dm3] 3R_10542467_SNP [dm6]	A	T	1.134e^-4	0.94	INTRON hth	TF binding site BDTNP1_TFBS_dl
3L	4349019	3L_4349019_SNP [dm3] 3L_4349019_SNP [dm6]	T	C	1.141e^-4	0.94	INTRON Cip4
2L	6240023	2L_6240023_SNP [dm3] 2L_6240023_SNP [dm6]	G	T	1.147e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3861065	X_3861065_SNP [dm3] X_3967032_SNP [dm6]	T	C	1.150e^-4	0.94	SYNONYMOUS_CODING CG6428
X	12021443	X_12021443_SNP [dm3] X_12127410_SNP [dm6]	A	C	1.152e^-4	0.94	UPSTREAM Ten-a INTRON Ten-a
3L	13157736	3L_13157736_SNP [dm3] 3L_13164636_SNP [dm6]	C	A	1.163e^-4	0.94	INTERGENIC
2L	7085030	2L_7085030_SNP [dm3] 2L_7085030_SNP [dm6]	A	T	1.164e^-4	0.94	UPSTREAM Pvf2 INTERGENIC	TF binding site mE1_TFBS_Trl
X	8000140	X_8000140_SNP [dm3] X_8106107_SNP [dm6]	T	C	1.170e^-4	0.94	UPSTREAM Gclc INTRON Gclc	TF binding site mE1_TFBS_inv
3R	26035497	3R_26035497_SNP [dm3] 3R_30209775_SNP [dm6]	A	T	1.174e^-4	0.94	UPSTREAM RpS7 & 1 other INTERGENIC
3R	17920035	3R_17920035_SNP [dm3] 3R_22094313_SNP [dm6]	A	G	1.175e^-4	0.94	INTRON CG5778
3L	12780106	3L_12780106_SNP [dm3] 3L_12787006_SNP [dm6]	G	A	1.180e^-4	0.94	SYNONYMOUS_CODING Atg1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2293276	2L_2293276_SNP [dm3] 2L_2293276_SNP [dm6]	C	T	1.183e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	14043710	3L_14043710_SNP [dm3] 3L_14050610_SNP [dm6]	C	A	1.185e^-4	0.94	UPSTREAM blue & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3L	683253	3L_683253_SNP [dm3] 3L_683253_SNP [dm6]	G	T	1.185e^-4	0.94	NON_SYNONYMOUS_CODING ebd1 UPSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6701479	2R_6701479_SNP [dm3] 2R_10813974_SNP [dm6]	C	T	1.185e^-4	0.94	UPSTREAM CG12341 INTRON CG7222	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	26169735	3R_26169735_SNP [dm3] 3R_30344013_SNP [dm6]	C	G	1.189e^-4	0.94	INTRON hdc	TF binding site BDTNP1_TFBS_dl
2R	5650701	2R_5650701_SNP [dm3] 2R_9763196_SNP [dm6]	C	G	1.192e^-4	0.94	SYNONYMOUS_CODING trpl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	12483337	2R_12483337_SNP [dm3] 2R_16595832_SNP [dm6]	A	G	1.212e^-4	0.94	SYNONYMOUS_CODING CG8303	TF binding site mE1_TFBS_sens
3L	13368206	3L_13368206_SNP [dm3] 3L_13375106_SNP [dm6]	G	A	1.217e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23003429	3R_23003429_SNP [dm3] 3R_27177707_SNP [dm6]	A	C	1.217e^-4	0.94	INTRON Ser	TF binding site mE1_TFBS_cad
2L	7493343	2L_7493343_SNP [dm3] 2L_7493343_SNP [dm6]	G	A	1.222e^-4	0.94	INTRON Ziz
2L	3601034	2L_3601034_SNP [dm3] 2L_3601034_SNP [dm6]	T	C	1.224e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_sens
3L	15392041	3L_15392041_DEL [dm3] 3L_15398941_DEL [dm6]	CC	C	1.236e^-4	0.94	INTERGENIC
2L	15756327	2L_15756327_DEL [dm3] 2L_15756327_DEL [dm6]	ATTA	A	1.239e^-4	0.94	UTR_3_PRIME Gli DOWNSTREAM l_2_35Df
3L	2434596	3L_2434596_SNP [dm3] 3L_2434596_SNP [dm6]	T	G	1.252e^-4	0.94	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3518489	X_3518489_DEL [dm3] X_3624456_DEL [dm6]	TTG	T	1.254e^-4	0.94	INTRON AstA-R1
3L	13359024	3L_13359024_SNP [dm3] 3L_13365924_SNP [dm6]	A	T	1.264e^-4	0.94	INTERGENIC
X	12675849	X_12675849_SNP [dm3] X_12781816_SNP [dm6]	C	T	1.275e^-4	0.94	INTRON CG32647
3L	3140789	3L_3140789_SNP [dm3] 3L_3140789_SNP [dm6]	A	G	1.276e^-4	0.94	UPSTREAM CG11537 INTRON CG11537
3L	21485843	3L_21485843_SNP [dm3] 3L_21492743_SNP [dm6]	T	G	1.295e^-4	0.94	UTR_5_PRIME CG7202 UPSTREAM CG7519
3L	12696516	3L_12696516_SNP [dm3] 3L_12703416_SNP [dm6]	C	G	1.301e^-4	0.94	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15390080	3L_15390080_SNP [dm3] 3L_15396980_SNP [dm6]	C	T	1.311e^-4	0.94	INTERGENIC
3L	22526049	3L_22526049_SNP [dm3] 3L_22532949_SNP [dm6]	T	G	1.312e^-4	0.94	INTERGENIC	transposable element FlyBase
2R	12270246	2R_12270246_SNP [dm3] 2R_16382741_SNP [dm6]	G	T	1.316e^-4	0.94	UTR_3_PRIME CG43187 DOWNSTREAM CG43187
2L	8114387	2L_8114387_DEL [dm3] 2L_8114387_DEL [dm6]	CA	C	1.322e^-4	0.94	UTR_3_PRIME Bsg
X	2339011	X_2339011_SNP [dm3] X_2444978_SNP [dm6]	G	A	1.332e^-4	0.94	UTR_3_PRIME boi
2L	9131977	2L_9131977_SNP [dm3] 2L_9131977_SNP [dm6]	C	T	1.334e^-4	0.94	INTRON CG32982
3L	12715206	3L_12715206_SNP [dm3] 3L_12722106_SNP [dm6]	A	T	1.335e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17031897	3R_17031897_SNP [dm3] 3R_21206175_SNP [dm6]	G	C	1.344e^-4	0.94	INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	8366234	2R_8366234_SNP [dm3] 2R_12478729_SNP [dm6]	G	A	1.345e^-4	0.94	INTRON Dh44-R2
2R	8371843	2R_8371843_SNP [dm3] 2R_12484338_SNP [dm6]	T	C	1.345e^-4	0.94	INTRON Dh44-R2
2L	6956061	2L_6956061_SNP [dm3] 2L_6956061_SNP [dm6]	T	C	1.350e^-4	0.94	SYNONYMOUS_CODING CG13775 UPSTREAM CG3430	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3494479	2R_3494479_SNP [dm3] 2R_7606974_SNP [dm6]	G	T	1.351e^-4	0.94	INTRON CG1358	TF binding site BDTNP1_TFBS_twi
3R	26713514	3R_26713514_SNP [dm3] 3R_30887792_SNP [dm6]	C	T	1.357e^-4	0.94	INTRON Sap-r
2L	4306167	2L_4306167_SNP [dm3] 2L_4306167_SNP [dm6]	A	G	1.364e^-4	0.94	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_chinmo
X	3731254	X_3731254_SNP [dm3] X_3837221_SNP [dm6]	G	C	1.372e^-4	0.94	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	3907818	3L_3907818_SNP [dm3] 3L_3907818_SNP [dm6]	A	C	1.374e^-4	0.94	DOWNSTREAM mge & 1 other INTERGENIC
3L	18149195	3L_18149195_SNP [dm3] 3L_18156095_SNP [dm6]	C	T	1.383e^-4	0.94	NON_SYNONYMOUS_CODING CG13699
3R	23263776	3R_23263776_SNP [dm3] 3R_27438054_SNP [dm6]	A	G	1.384e^-4	0.94	UPSTREAM side DOWNSTREAM CG44290 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23003443	3R_23003443_SNP [dm3] 3R_27177721_SNP [dm6]	A	T	1.415e^-4	0.94	INTRON Ser	TF binding site mE1_TFBS_cad
X	3791169	X_3791169_SNP [dm3] X_3897136_SNP [dm6]	T	G	1.434e^-4	0.94	INTRON CG42541
3R	22764850	3R_22764850_SNP [dm3] 3R_26939128_SNP [dm6]	T	G	1.451e^-4	0.94	SYNONYMOUS_CODING sda
2R	18439993	2R_18439993_SNP [dm3] 2R_22552488_SNP [dm6]	G	A	1.466e^-4	0.94	DOWNSTREAM CG6018 INTRON px
3L	18866392	3L_18866392_SNP [dm3] 3L_18873292_SNP [dm6]	C	T	1.470e^-4	0.94	UPSTREAM Rad9 INTRON Ugt
3R	7875836	3R_7875836_SNP [dm3] 3R_12050114_SNP [dm6]	C	A	1.472e^-4	0.94	UPSTREAM CG14739 INTERGENIC
3L	1082233	3L_1082233_DEL [dm3] 3L_1082233_DEL [dm6]	AGTGCCAGATGAGTTGCGAT...	A	1.472e^-4	0.94	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10448492	X_10448492_SNP [dm3] X_10554459_SNP [dm6]	T	C	1.474e^-4	0.94	INTRON spri
2R	6435275	2R_6435275_SNP [dm3] 2R_10547770_SNP [dm6]	A	T	1.475e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	22079612	2L_22079612_SNP [dm3] 2L_22079612_SNP [dm6]	T	A	1.477e^-4	0.94	UPSTREAM ttm3 INTERGENIC
2L	7502115	2L_7502115_SNP [dm3] 2L_7502115_SNP [dm6]	G	T	1.479e^-4	0.94	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
X	12940912	X_12940912_SNP [dm3] X_13046879_SNP [dm6]	G	A	1.481e^-4	0.94	INTRON rad
3R	5120235	3R_5120235_SNP [dm3] 3R_9294513_SNP [dm6]	G	T	1.486e^-4	0.94	UTR_3_PRIME CG8861 DOWNSTREAM CG8861
2L	2293607	2L_2293607_SNP [dm3] 2L_2293607_SNP [dm6]	T	A	1.491e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	10412814	3R_10412814_SNP [dm3] 3R_14587092_SNP [dm6]	C	G	1.492e^-4	0.94	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17431565	2R_17431565_SNP [dm3] 2R_21544060_SNP [dm6]	C	T	1.495e^-4	0.94	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8114383	2L_8114383_SNP [dm3] 2L_8114383_SNP [dm6]	C	A	1.495e^-4	0.94	UTR_3_PRIME Bsg
2L	18222855	2L_18222855_SNP [dm3] 2L_18222855_SNP [dm6]	G	C	1.514e^-4	0.94	INTRON CG42750
2L	15275484	2L_15275484_SNP [dm3] 2L_15275484_SNP [dm6]	A	G	1.520e^-4	0.94	UPSTREAM UK114 INTERGENIC	TF binding site mE1_TFBS_inv
X	3861056	X_3861056_SNP [dm3] X_3967023_SNP [dm6]	G	T	1.524e^-4	0.94	SYNONYMOUS_CODING CG6428
2L	2684255	2L_2684255_SNP [dm3] 2L_2684255_SNP [dm6]	G	A	1.529e^-4	0.94	INTRON CG31690
3L	14052556	3L_14052556_SNP [dm3] 3L_14059456_SNP [dm6]	A	G	1.533e^-4	0.94	INTRON CG32138
X	15313054	X_15313054_SNP [dm3] X_15419021_SNP [dm6]	C	A	1.543e^-4	0.94	INTRON Cngl
X	16766781	X_16766781_SNP [dm3] X_16872748_SNP [dm6]	C	T	1.544e^-4	0.94	INTRON CG13003
3R	22905163	3R_22905163_SNP [dm3] 3R_27079441_SNP [dm6]	C	T	1.549e^-4	0.94	INTRON CG14257	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6501173	2L_6501173_DEL [dm3] 2L_6501173_DEL [dm6]	ACAA	A	1.550e^-4	0.94	INTRON CG31637	TF binding site mE1_TFBS_sens
3L	8603342	3L_8603342_SNP [dm3] 3L_8610242_SNP [dm6]	T	C	1.553e^-4	0.94	SYNONYMOUS_CODING CG6282	TF binding site mE1_TFBS_cad
3L	13360917	3L_13360917_DEL [dm3] 3L_13367817_DEL [dm6]	CC	C	1.563e^-4	0.94	INTERGENIC
3R	17942047	3R_17942047_SNP [dm3] 3R_22116325_SNP [dm6]	G	A	1.563e^-4	0.94	SYNONYMOUS_CODING Ir94b
X	20722803	X_20722803_SNP [dm3] X_20851776_SNP [dm6]	T	G	1.564e^-4	0.94	INTRON shakB
3L	11302020	3L_11302020_INS [dm3] 3L_11308920_INS [dm6]	A	AA	1.572e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
3R	25030053	3R_25030053_SNP [dm3] 3R_29204331_SNP [dm6]	T	A	1.588e^-4	0.94	UPSTREAM CG14508 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7493407	2L_7493407_INS [dm3] 2L_7493407_INS [dm6]	G	GT	1.589e^-4	0.94	INTRON Ziz
3R	20493459	3R_20493459_SNP [dm3] 3R_24667737_SNP [dm6]	A	G	1.590e^-4	0.94	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
3R	26578441	3R_26578441_SNP [dm3] 3R_30752719_SNP [dm6]	T	A	1.594e^-4	0.94	INTERGENIC
3R	17560634	3R_17560634_DEL [dm3] 3R_21734912_DEL [dm6]	ATATTCC	A	1.620e^-4	0.94	DOWNSTREAM Sfp93F INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12021505	X_12021505_SNP [dm3] X_12127472_SNP [dm6]	T	A	1.625e^-4	0.94	UPSTREAM Ten-a INTRON Ten-a
2L	9212178	2L_9212178_SNP [dm3] 2L_9212178_SNP [dm6]	C	T	1.627e^-4	0.94	INTRON tai
3L	6571967	3L_6571967_SNP [dm3] 3L_6578867_SNP [dm6]	T	A	1.643e^-4	0.94	INTRON CG18769 & 1 other
X	20693039	X_20693039_SNP [dm3] X_20822012_SNP [dm6]	T	C	1.650e^-4	0.94	UPSTREAM CG15450 INTRON shakB
3R	19125733	3R_19125733_SNP [dm3] 3R_23300011_SNP [dm6]	G	A	1.653e^-4	0.94	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6759244	3R_6759244_SNP [dm3] 3R_10933522_SNP [dm6]	G	A	1.655e^-4	0.94	INTERGENIC
3R	22733238	3R_22733238_SNP [dm3] 3R_26907516_SNP [dm6]	T	G	1.665e^-4	0.94	INTRON T48
3L	15024624	3L_15024624_SNP [dm3] 3L_15031524_SNP [dm6]	C	T	1.678e^-4	0.94	INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23517676	3R_23517676_SNP [dm3] 3R_27691954_SNP [dm6]	A	G	1.692e^-4	0.94	SYNONYMOUS_CODING CG12880	TF binding site mE1_TFBS_chinmo
3L	16434231	3L_16434231_SNP [dm3] 3L_16441131_SNP [dm6]	A	G	1.697e^-4	0.94	INTRON CG33158 & 1 other
2L	8893798	2L_8893798_SNP [dm3] 2L_8893798_SNP [dm6]	T	C	1.697e^-4	0.94	INTERGENIC
3L	2965408	3L_2965408_SNP [dm3] 3L_2965408_SNP [dm6]	G	A	1.699e^-4	0.94	INTERGENIC
2R	17403708	2R_17403708_SNP [dm3] 2R_21516203_SNP [dm6]	A	G	1.703e^-4	0.94	NON_SYNONYMOUS_CODING MESK2 DOWNSTREAM CG10494
3L	13368217	3L_13368217_SNP [dm3] 3L_13375117_SNP [dm6]	A	T	1.707e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_HSA
X	3861092	X_3861092_SNP [dm3] X_3967059_SNP [dm6]	T	C	1.708e^-4	0.94	SYNONYMOUS_CODING CG6428
3L	18888461	3L_18888461_SNP [dm3] 3L_18895361_SNP [dm6]	G	T	1.714e^-4	0.94	DOWNSTREAM snoRNA:Psi28S-2566 INTRON CG3902
3R	2666136	3R_2666136_SNP [dm3] 3R_6840414_SNP [dm6]	A	G	1.722e^-4	0.94	INTRON Scr
2R	11113469	2R_11113469_SNP [dm3] 2R_15225964_SNP [dm6]	G	T	1.732e^-4	0.94	UPSTREAM CR44370 INTRON Fs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13357010	2L_13357010_INS [dm3] 2L_13357010_INS [dm6]	T	TTTTA	1.758e^-4	0.94	INTERGENIC
2L	2272670	2L_2272670_SNP [dm3] 2L_2272670_SNP [dm6]	G	A	1.765e^-4	0.94	INTRON CR43753
3R	19901136	3R_19901136_SNP [dm3] 3R_24075414_SNP [dm6]	T	C	1.765e^-4	0.94	INTRON 4EHP
X	10448951	X_10448951_SNP [dm3] X_10554918_SNP [dm6]	C	T	1.773e^-4	0.94	INTRON spri
2R	598982	2R_598982_SNP [dm3] 2R_4711477_SNP [dm6]	A	G	1.774e^-4	0.94	INTRON Nipped-B
2L	6964591	2L_6964591_SNP [dm3] 2L_6964591_SNP [dm6]	C	G	1.782e^-4	0.94	NON_SYNONYMOUS_CODING Coprox UPSTREAM sip2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1944767	3L_1944767_SNP [dm3] 3L_1944767_SNP [dm6]	T	A	1.784e^-4	0.94	NON_SYNONYMOUS_CODING mu2
3L	8401876	3L_8401876_SNP [dm3] 3L_8408776_SNP [dm6]	G	A	1.798e^-4	0.94	SYNONYMOUS_CODING Oseg1
2L	111525	2L_111525_SNP [dm3] 2L_111525_SNP [dm6]	T	C	1.801e^-4	0.94	DOWNSTREAM Sam-S INTRON Sam-S
2R	19357029	2R_19357029_SNP [dm3] 2R_23469506_SNP [dm6]	T	A	1.816e^-4	0.94	DOWNSTREAM Or59b INTRON CG43795
2L	19601621	2L_19601621_DEL [dm3] 2L_19601621_DEL [dm6]	TATGCATTTATTTTTATATT...	T	1.817e^-4	0.94	INTRON CR44978 & 1 other
2L	3324308	2L_3324308_SNP [dm3] 2L_3324308_SNP [dm6]	G	T	1.819e^-4	0.94	START_GAINED CG33281 UTR_5_PRIME CG33281
3L	17405369	3L_17405369_SNP [dm3] 3L_17412269_SNP [dm6]	G	A	1.824e^-4	0.94	INTRON blot	TF binding site BDTNP1_TFBS_Med
3R	19901295	3R_19901295_SNP [dm3] 3R_24075573_SNP [dm6]	C	T	1.839e^-4	0.94	INTRON 4EHP
X	9847385	X_9847385_SNP [dm3] X_9953352_SNP [dm6]	C	A	1.839e^-4	0.94	INTERGENIC
3L	11961498	3L_11961498_SNP [dm3] 3L_11968398_SNP [dm6]	C	A	1.856e^-4	0.94	NON_SYNONYMOUS_CODING Muc68E	TF binding site mE1_TFBS_sens
3R	11014100	3R_11014100_SNP [dm3] 3R_15188378_SNP [dm6]	A	T	1.858e^-4	0.94	NON_SYNONYMOUS_CODING Gyc88E	TF binding site mE1_TFBS_cad
3R	23799463	3R_23799463_SNP [dm3] 3R_27973741_SNP [dm6]	A	G	1.869e^-4	0.94	INTRON betaTub97EF
3R	17090739	3R_17090739_SNP [dm3] 3R_21265017_SNP [dm6]	C	A	1.871e^-4	0.94	UTR_3_PRIME ETHR	TF binding site mE1_TFBS_cad
2R	14963465	2R_14963465_SNP [dm3] 2R_19075960_SNP [dm6]	T	C	1.871e^-4	0.94	INTRON 5-HT1A
X	12940909	X_12940909_SNP [dm3] X_13046876_SNP [dm6]	T	C	1.871e^-4	0.94	INTRON rad
2R	2715027	2R_2715027_SNP [dm3] 2R_6827522_SNP [dm6]	C	T	1.871e^-4	0.94	UPSTREAM CG15236 INTERGENIC
3L	10809303	3L_10809303_SNP [dm3] 3L_10816203_SNP [dm6]	T	C	1.874e^-4	0.94	UPSTREAM CR45247 DOWNSTREAM CG42831 INTERGENIC
X	11238477	X_11238477_SNP [dm3] X_11344444_SNP [dm6]	A	C	1.905e^-4	0.94	UTR_3_PRIME CG34348 DOWNSTREAM CG1597
3L	7634515	3L_7634515_SNP [dm3] 3L_7641415_SNP [dm6]	A	C	1.906e^-4	0.94	NON_SYNONYMOUS_CODING CG7506 UPSTREAM CG33276	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	13492424	3R_13492424_SNP [dm3] 3R_17666702_SNP [dm6]	G	A	1.915e^-4	0.94	UPSTREAM CR45045 INTRON CG14322	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6080363	X_6080363_SNP [dm3] X_6186330_SNP [dm6]	T	A	1.915e^-4	0.94	INTRON Ca-alpha1T
X	20723608	X_20723608_SNP [dm3] X_20852581_SNP [dm6]	A	C	1.920e^-4	0.94	INTRON shakB	TF binding site mE1_TFBS_sbb
2R	3763370	2R_3763370_SNP [dm3] 2R_7875865_SNP [dm6]	G	A	1.928e^-4	0.94	INTRON Dgk
3R	15132417	3R_15132417_SNP [dm3] 3R_19306695_SNP [dm6]	A	T	1.928e^-4	0.94	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	13571655	3R_13571655_SNP [dm3] 3R_17745933_SNP [dm6]	G	A	1.930e^-4	0.94	UTR_3_PRIME TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26037613	3R_26037613_SNP [dm3] 3R_30211891_SNP [dm6]	C	T	1.941e^-4	0.94	UPSTREAM CecA2 DOWNSTREAM CecA1 & 1 other INTERGENIC
3R	3286468	3R_3286468_SNP [dm3] 3R_7460746_SNP [dm6]	T	C	1.944e^-4	0.94	INTERGENIC
2R	16529056	2R_16529056_SNP [dm3] 2R_20641551_SNP [dm6]	T	A	1.944e^-4	0.94	UTR_3_PRIME maf-S UPSTREAM rig & 1 other DOWNSTREAM CG33785 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8887165	2L_8887165_SNP [dm3] 2L_8887165_SNP [dm6]	G	A	1.946e^-4	0.94	DOWNSTREAM CR44415 EXON CR44415	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	16878535	3R_16878535_SNP [dm3] 3R_21052813_SNP [dm6]	A	C	1.955e^-4	0.94	DOWNSTREAM Mvl INTRON Mvl
X	19879817	X_19879817_SNP [dm3] X_19985784_SNP [dm6]	G	A	1.957e^-4	0.94	INTERGENIC
3R	21577562	3R_21577562_SNP [dm3] 3R_25751840_SNP [dm6]	C	A	1.965e^-4	0.94	INTRON LpR1
3R	23799798	3R_23799798_SNP [dm3] 3R_27974076_SNP [dm6]	C	T	1.967e^-4	0.94	INTRON betaTub97EF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18048909	3R_18048909_SNP [dm3] 3R_22223187_SNP [dm6]	C	A	1.968e^-4	0.94	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12318582	X_12318582_SNP [dm3] X_12424549_SNP [dm6]	G	T	1.968e^-4	0.94	INTERGENIC
3R	7875831	3R_7875831_SNP [dm3] 3R_12050109_SNP [dm6]	C	T	1.970e^-4	0.94	UPSTREAM CG14739 INTERGENIC
X	12676211	X_12676211_INS [dm3] X_12782178_INS [dm6]	T	CTA	1.972e^-4	0.94	INTRON CG32647
2R	20393653	2R_20393653_SNP [dm3] 2R_24506130_SNP [dm6]	G	A	1.972e^-4	0.94	UPSTREAM CG13581 INTERGENIC
3L	683291	3L_683291_SNP [dm3] 3L_683291_SNP [dm6]	C	T	1.983e^-4	0.94	SYNONYMOUS_CODING ebd1 UPSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9115362	2R_9115362_SNP [dm3] 2R_13227857_SNP [dm6]	G	T	1.990e^-4	0.94	UTR_3_PRIME Dp DOWNSTREAM Pex13 & 1 other
3L	4349201	3L_4349201_SNP [dm3] 3L_4349201_SNP [dm6]	A	C	2.015e^-4	0.94	INTRON Cip4
2L	6501815	2L_6501815_SNP [dm3] 2L_6501815_SNP [dm6]	A	C	2.018e^-4	0.94	INTRON CG31637
2L	7491822	2L_7491822_SNP [dm3] 2L_7491822_SNP [dm6]	G	T	2.026e^-4	0.94	INTRON Ziz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	4306168	2L_4306168_SNP [dm3] 2L_4306168_SNP [dm6]	G	C	2.044e^-4	0.94	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_chinmo
2L	8989496	2L_8989496_DEL [dm3] 2L_8989496_DEL [dm6]	CCCGATC	C	2.051e^-4	0.94	UTR_5_PRIME rost UPSTREAM rost
3L	7628553	3L_7628553_SNP [dm3] 3L_7635453_SNP [dm6]	T	C	2.053e^-4	0.94	INTRON CG33275	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26722383	3R_26722383_SNP [dm3] 3R_30896661_SNP [dm6]	T	C	2.065e^-4	0.94	INTRON Cyp4c3
3R	2666113	3R_2666113_SNP [dm3] 3R_6840391_SNP [dm6]	G	A	2.081e^-4	0.94	INTRON Scr
3R	26719975	3R_26719975_SNP [dm3] 3R_30894253_SNP [dm6]	C	A	2.085e^-4	0.94	NON_SYNONYMOUS_CODING Cyp4c3	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	24103838	3R_24103838_SNP [dm3] 3R_28278116_SNP [dm6]	T	C	2.091e^-4	0.94	INTERGENIC
2R	11113468	2R_11113468_SNP [dm3] 2R_15225963_SNP [dm6]	G	C	2.091e^-4	0.94	UPSTREAM CR44370 INTRON Fs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12021512	X_12021512_SNP [dm3] X_12127479_SNP [dm6]	A	T	2.096e^-4	0.94	UPSTREAM Ten-a INTRON Ten-a
X	3731277	X_3731277_SNP [dm3] X_3837244_SNP [dm6]	A	G	2.102e^-4	0.94	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18214668	2L_18214668_SNP [dm3] 2L_18214668_SNP [dm6]	A	G	2.104e^-4	0.94	INTRON CG42750
3L	682916	3L_682916_SNP [dm3] 3L_682916_SNP [dm6]	A	C	2.109e^-4	0.94	UTR_3_PRIME ebd1 UPSTREAM CG3386	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	2640705	3R_2640705_SNP [dm3] 3R_6814983_SNP [dm6]	G	T	2.119e^-4	0.94	INTRON CR42651	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	13466047	2L_13466047_SNP [dm3] 2L_13466047_SNP [dm6]	A	G	2.124e^-4	0.94	INTRON CG42784
X	19080287	X_19080287_SNP [dm3] X_19186254_SNP [dm6]	A	T	2.125e^-4	0.94	INTRON CG33253	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13704241	2R_13704241_SNP [dm3] 2R_17816736_SNP [dm6]	A	C	2.126e^-4	0.94	INTRON grh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	7728262	3L_7728262_DEL [dm3] 3L_7735162_DEL [dm6]	AA	A	2.139e^-4	0.94	INTRON CG32373 & 1 other
3L	11897808	3L_11897808_SNP [dm3] 3L_11904708_SNP [dm6]	T	C	2.147e^-4	0.94	INTRON CG44837
3R	26535328	3R_26535328_INS [dm3] 3R_30709606_INS [dm6]	T	TG	2.148e^-4	0.94	INTERGENIC
2R	17321947	2R_17321947_SNP [dm3] 2R_21434442_SNP [dm6]	T	G	2.156e^-4	0.94	INTRON Sdc
3L	18149106	3L_18149106_SNP [dm3] 3L_18156006_SNP [dm6]	G	A	2.168e^-4	0.94	SYNONYMOUS_CODING CG13699
3L	8393759	3L_8393759_SNP [dm3] 3L_8400659_SNP [dm6]	C	T	2.177e^-4	0.94	SYNONYMOUS_CODING CG7120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	21281000	X_21281000_SNP [dm3] X_21409973_SNP [dm6]	A	G	2.191e^-4	0.94	INTRON CR45003
X	20496798	X_20496798_INS [dm3] X_20625771_INS [dm6]	T	TT	2.193e^-4	0.94	INTERGENIC
3L	14706577	3L_14706577_SNP [dm3] 3L_14713477_SNP [dm6]	C	G	2.195e^-4	0.94	INTRON ome
X	16229895	X_16229895_SNP [dm3] X_16335862_SNP [dm6]	T	C	2.198e^-4	0.94	UPSTREAM Dsp1 INTRON Dsp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D
X	10448845	X_10448845_SNP [dm3] X_10554812_SNP [dm6]	C	T	2.201e^-4	0.94	INTRON spri
X	3918948	X_3918948_SNP [dm3] X_4024915_SNP [dm6]	G	A	2.209e^-4	0.94	INTERGENIC
2L	7494976	2L_7494976_SNP [dm3] 2L_7494976_SNP [dm6]	C	T	2.209e^-4	0.94	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	13620160	3L_13620160_SNP [dm3] 3L_13627060_SNP [dm6]	A	G	2.213e^-4	0.94	INTRON bru-3	TF binding site mE1_TFBS_chinmo
3R	567135	3R_567135_SNP [dm3] 3R_4741413_SNP [dm6]	C	G	2.216e^-4	0.94	INTRON tacc	TF binding site BDTNP1_TFBS_dl
2L	171345	2L_171345_SNP [dm3] 2L_171345_SNP [dm6]	C	G	2.217e^-4	0.94	INTRON spen	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	13458156	X_13458156_INS [dm3] X_13564123_INS [dm6]	T	TGCGTGTTTGT...	2.218e^-4	0.94	UTR_5_PRIME Tango13 DOWNSTREAM CG32633	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	21286440	2L_21286440_SNP [dm3] 2L_21286440_SNP [dm6]	C	A	2.219e^-4	0.94	INTRON Mio
2R	15667671	2R_15667671_SNP [dm3] 2R_19780166_SNP [dm6]	C	T	2.220e^-4	0.94	INTERGENIC
2R	14963463	2R_14963463_SNP [dm3] 2R_19075958_SNP [dm6]	A	T	2.227e^-4	0.94	INTRON 5-HT1A
3R	10201439	3R_10201439_DEL [dm3] 3R_14375717_DEL [dm6]	CACCGAC	C	2.235e^-4	0.94	EXON CR44943
3L	11992174	3L_11992174_SNP [dm3] 3L_11999074_SNP [dm6]	G	C	2.258e^-4	0.94	UPSTREAM Grip163 DOWNSTREAM Pop2 INTRON Pop2
2L	167271	2L_167271_SNP [dm3] 2L_167271_SNP [dm6]	T	G	2.266e^-4	0.94	INTRON spen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17793374	3R_17793374_SNP [dm3] 3R_21967652_SNP [dm6]	C	T	2.273e^-4	0.94	INTRON Eip93F
2L	1202289	2L_1202289_SNP [dm3] 2L_1202289_SNP [dm6]	A	G	2.284e^-4	0.94	INTERGENIC
3R	21576747	3R_21576747_SNP [dm3] 3R_25751025_SNP [dm6]	T	C	2.286e^-4	0.94	INTRON LpR1
3L	15390051	3L_15390051_SNP [dm3] 3L_15396951_SNP [dm6]	A	G	2.298e^-4	0.94	INTERGENIC
3L	18866349	3L_18866349_SNP [dm3] 3L_18873249_SNP [dm6]	C	A	2.307e^-4	0.94	UPSTREAM Rad9 INTRON Ugt
2R	8533998	2R_8533998_SNP [dm3] 2R_12646493_SNP [dm6]	C	G	2.324e^-4	0.94	INTRON CG8785
2R	19020739	2R_19020739_SNP [dm3] 2R_23133216_SNP [dm6]	T	A	2.332e^-4	0.94	INTERGENIC
2L	2293040	2L_2293040_SNP [dm3] 2L_2293040_SNP [dm6]	G	A	2.346e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	17754657	2L_17754657_SNP [dm3] 2L_17754657_SNP [dm6]	C	T	2.347e^-4	0.94	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21275170	3R_21275170_SNP [dm3] 3R_25449448_SNP [dm6]	A	G	2.349e^-4	0.94	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12151000	3R_12151000_SNP [dm3] 3R_16325278_SNP [dm6]	G	C	2.351e^-4	0.94	UPSTREAM CG17929 DOWNSTREAM CG6901 INTRON Sulf1
2L	8860959	2L_8860959_SNP [dm3] 2L_8860959_SNP [dm6]	C	T	2.352e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	7876536	3R_7876536_SNP [dm3] 3R_12050814_SNP [dm6]	A	G	2.356e^-4	0.94	INTERGENIC
2R	5649663	2R_5649663_SNP [dm3] 2R_9762158_SNP [dm6]	G	A	2.363e^-4	0.94	SYNONYMOUS_CODING trpl	TF binding site mE1_TFBS_cad
3R	23265199	3R_23265199_SNP [dm3] 3R_27439477_SNP [dm6]	A	G	2.365e^-4	0.94	UPSTREAM CG43447 INTRON CG44290
2L	5365754	2L_5365754_SNP [dm3] 2L_5365754_SNP [dm6]	A	C	2.368e^-4	0.94	UTR_3_PRIME nompC DOWNSTREAM nompC	TF binding site mE1_TFBS_bab1
3R	25100567	3R_25100567_DEL [dm3] 3R_29274845_DEL [dm6]	AC	T	2.384e^-4	0.94	INTERGENIC	regulatory region REDfly_CRMs
3R	24099073	3R_24099073_SNP [dm3] 3R_28273351_SNP [dm6]	A	G	2.385e^-4	0.94	INTERGENIC
3R	26169691	3R_26169691_MNP [dm3] 3R_30343969_MNP [dm6]	GTA	CCT	2.393e^-4	0.94	INTRON hdc	TF binding site BDTNP1_TFBS_dl
3L	1016153	3L_1016153_SNP [dm3] 3L_1016153_SNP [dm6]	C	A	2.395e^-4	0.94	INTRON trio
3R	22842385	3R_22842385_SNP [dm3] 3R_27016663_SNP [dm6]	C	T	2.398e^-4	0.94	DOWNSTREAM CG17192 INTRON RYa-R
2L	1850211	2L_1850211_SNP [dm3] 2L_1850211_SNP [dm6]	T	C	2.406e^-4	0.94	INTRON wry
2L	11375310	2L_11375310_SNP [dm3] 2L_11375310_SNP [dm6]	G	C	2.415e^-4	0.94	INTERGENIC	regulatory region REDfly_CRMs
2R	11172647	2R_11172647_SNP [dm3] 2R_15285142_SNP [dm6]	A	C	2.416e^-4	0.94	INTRON Trpm
2L	19698073	2L_19698073_SNP [dm3] 2L_19698073_SNP [dm6]	C	T	2.424e^-4	0.94	INTRON Lar
X	15313066	X_15313066_SNP [dm3] X_15419033_SNP [dm6]	G	T	2.435e^-4	0.94	INTRON Cngl
2L	14253556	2L_14253556_SNP [dm3] 2L_14253556_SNP [dm6]	G	A	2.440e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14757166	X_14757166_SNP [dm3] X_14863133_SNP [dm6]	C	A	2.445e^-4	0.94	UTR_3_PRIME CG9518 INTRON Flo2
X	12675960	X_12675960_SNP [dm3] X_12781927_SNP [dm6]	A	T	2.448e^-4	0.94	INTRON CG32647
X	21902804	X_21902804_SNP [dm3] X_22500968_SNP [dm6]	C	T	2.450e^-4	0.94	INTRON l_1_G0196
3L	18547249	3L_18547249_SNP [dm3] 3L_18554149_SNP [dm6]	A	T	2.453e^-4	0.94	INTERGENIC
2R	18032128	2R_18032128_DEL [dm3] 2R_22144623_DEL [dm6]	TGTAT	T	2.457e^-4	0.94	INTRON a	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	6829325	X_6829325_SNP [dm3] X_6935292_SNP [dm6]	T	C	2.460e^-4	0.94	INTRON CG14431
3L	4351950	3L_4351950_SNP [dm3] 3L_4351950_SNP [dm6]	C	A	2.461e^-4	0.94	INTRON Cip4
3R	2715128	3R_2715128_SNP [dm3] 3R_6889406_SNP [dm6]	G	A	2.462e^-4	0.94	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8867443	3L_8867443_DEL [dm3] 3L_8874343_DEL [dm6]	GCAACGCCCCCCTTTTACAG...	G	2.464e^-4	0.94	INTRON dally
2L	9441408	2L_9441408_SNP [dm3] 2L_9441408_SNP [dm6]	C	T	2.466e^-4	0.94	UPSTREAM CG33723 INTRON numb
2L	3321346	2L_3321346_SNP [dm3] 2L_3321346_SNP [dm6]	G	A	2.467e^-4	0.94	INTRON CG8837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15208106	3R_15208106_SNP [dm3] 3R_19382384_SNP [dm6]	G	A	2.471e^-4	0.94	INTRON Ino80
X	17658734	X_17658734_SNP [dm3] X_17764701_SNP [dm6]	C	A	2.481e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21357190	3R_21357190_SNP [dm3] 3R_25531468_SNP [dm6]	A	T	2.494e^-4	0.94	INTRON msi
2L	18120437	2L_18120437_SNP [dm3] 2L_18120437_SNP [dm6]	A	T	2.509e^-4	0.94	INTRON CG5758
2R	17243079	2R_17243079_SNP [dm3] 2R_21355574_SNP [dm6]	T	C	2.519e^-4	0.94	UTR_3_PRIME cv-2
3R	17032445	3R_17032445_SNP [dm3] 3R_21206723_SNP [dm6]	C	T	2.528e^-4	0.94	INTRON SNF4Agamma	TF binding site mE1_TFBS_Trl
2R	2658034	2R_2658034_SNP [dm3] 2R_6770529_SNP [dm6]	G	A	2.538e^-4	0.94	UPSTREAM Epac INTRON Epac
2L	3318264	2L_3318264_SNP [dm3] 2L_3318264_SNP [dm6]	T	A	2.546e^-4	0.94	SYNONYMOUS_CODING CG3326 DOWNSTREAM CG3277
3L	7625101	3L_7625101_SNP [dm3] 3L_7632001_SNP [dm6]	T	A	2.555e^-4	0.94	INTRON CG33275
3R	20993871	3R_20993871_SNP [dm3] 3R_25168149_SNP [dm6]	G	T	2.555e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	16426623	3R_16426623_SNP [dm3] 3R_20600901_SNP [dm6]	A	G	2.557e^-4	0.94	INTRON bon	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12676201	X_12676201_INS [dm3] X_12782168_INS [dm6]	T	TGACCGTGAA	2.557e^-4	0.94	INTRON CG32647
X	11659662	X_11659662_SNP [dm3] X_11765629_SNP [dm6]	G	A	2.567e^-4	0.94	INTRON m	TF binding site mE1_TFBS_cnc
2L	1626144	2L_1626144_SNP [dm3] 2L_1626144_SNP [dm6]	A	T	2.580e^-4	0.94	UPSTREAM CR44603 INTERGENIC
3L	16490612	3L_16490612_SNP [dm3] 3L_16497512_SNP [dm6]	T	A	2.581e^-4	0.94	UPSTREAM st DOWNSTREAM CG33158 INTRON CG43373	TF binding site mE1_TFBS_cad
2L	16956373	2L_16956373_SNP [dm3] 2L_16956373_SNP [dm6]	T	A	2.581e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	1790842	X_1790842_SNP [dm3] X_1896809_SNP [dm6]	C	T	2.595e^-4	0.94	INTRON arm
2L	17785626	2L_17785626_SNP [dm3] 2L_17785626_SNP [dm6]	T	C	2.601e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	18799505	3R_18799505_SNP [dm3] 3R_22973783_SNP [dm6]	A	T	2.602e^-4	0.94	INTERGENIC
3L	20759720	3L_20759720_SNP [dm3] 3L_20766620_SNP [dm6]	G	A	2.610e^-4	0.94	INTERGENIC
3R	22733207	3R_22733207_SNP [dm3] 3R_26907485_SNP [dm6]	G	A	2.613e^-4	0.94	INTRON T48
2L	7061147	2L_7061147_DEL [dm3] 2L_7061147_DEL [dm6]	ACAGCAA	A	2.614e^-4	0.94	UPSTREAM CG31907
X	17237278	X_17237278_SNP [dm3] X_17343245_SNP [dm6]	A	T	2.614e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3518496	X_3518496_SNP [dm3] X_3624463_SNP [dm6]	T	C	2.624e^-4	0.94	INTRON AstA-R1
3R	23265114	3R_23265114_SNP [dm3] 3R_27439392_SNP [dm6]	C	T	2.626e^-4	0.94	UPSTREAM CG43447 INTRON CG44290	TF binding site BDTNP1_TFBS_twi
3L	5976501	3L_5976501_SNP [dm3] 3L_5983401_SNP [dm6]	G	A	2.630e^-4	0.94	DOWNSTREAM CR45439 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	17919905	3R_17919905_SNP [dm3] 3R_22094183_SNP [dm6]	C	A	2.635e^-4	0.94	INTRON CG5778	TF binding site mE1_TFBS_run
2R	14515312	2R_14515312_SNP [dm3] 2R_18627807_SNP [dm6]	C	T	2.638e^-4	0.94	UPSTREAM Eip55E DOWNSTREAM Sec6 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3731752	X_3731752_SNP [dm3] X_3837719_SNP [dm6]	A	C	2.643e^-4	0.94	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	20699321	X_20699321_SNP [dm3] X_20828294_SNP [dm6]	A	T	2.647e^-4	0.94	INTRON shakB
3R	22690387	3R_22690387_SNP [dm3] 3R_26864665_SNP [dm6]	G	A	2.648e^-4	0.94	UTR_3_PRIME ball DOWNSTREAM IntS12	TF binding site mE1_TFBS_HSA
3L	11302231	3L_11302231_SNP [dm3] 3L_11309131_SNP [dm6]	G	T	2.649e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
2L	21006712	2L_21006712_SNP [dm3] 2L_21006712_SNP [dm6]	T	G	2.658e^-4	0.94	INTRON CG42238
3L	6817174	3L_6817174_SNP [dm3] 3L_6824074_SNP [dm6]	A	G	2.658e^-4	0.94	INTERGENIC	regulatory region REDfly_CRMs
2L	936735	2L_936735_SNP [dm3] 2L_936735_SNP [dm6]	A	G	2.662e^-4	0.94	INTRON CG4341
2L	18234375	2L_18234375_SNP [dm3] 2L_18234375_SNP [dm6]	T	G	2.664e^-4	0.94	INTRON CG42750
X	12264438	X_12264438_SNP [dm3] X_12370405_SNP [dm6]	A	G	2.669e^-4	0.94	INTERGENIC
2R	4017765	2R_4017765_SNP [dm3] 2R_8130260_SNP [dm6]	C	A	2.670e^-4	0.94	SYNONYMOUS_CODING Pbp49 UTR_3_PRIME CG42516 DOWNSTREAM Socs44A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10172084	3R_10172084_SNP [dm3] 3R_14346362_SNP [dm6]	T	C	2.677e^-4	0.94	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2338456	X_2338456_SNP [dm3] X_2444423_SNP [dm6]	C	A	2.691e^-4	0.94	UTR_3_PRIME boi UPSTREAM tko	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3R	21091730	3R_21091730_SNP [dm3] 3R_25266008_SNP [dm6]	T	C	2.691e^-4	0.94	SYNONYMOUS_CODING RIOK2 UPSTREAM Aats-gln DOWNSTREAM CR45214	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6366216	3R_6366216_SNP [dm3] 3R_10540494_SNP [dm6]	G	C	2.699e^-4	0.94	INTRON hth	TF binding site mE1_TFBS_cad
2L	972277	2L_972277_SNP [dm3] 2L_972277_SNP [dm6]	C	T	2.702e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10450411	3L_10450411_SNP [dm3] 3L_10457311_SNP [dm6]	T	A	2.709e^-4	0.94	INTERGENIC
3L	17435507	3L_17435507_SNP [dm3] 3L_17442407_SNP [dm6]	T	C	2.712e^-4	0.94	INTRON CG18265	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20493467	3R_20493467_SNP [dm3] 3R_24667745_SNP [dm6]	G	C	2.734e^-4	0.94	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
X	20005226	X_20005226_SNP [dm3] X_20111193_SNP [dm6]	T	G	2.737e^-4	0.94	UPSTREAM karr INTERGENIC	transposable element FlyBase
2L	16363240	2L_16363240_SNP [dm3] 2L_16363240_SNP [dm6]	C	T	2.741e^-4	0.94	INTERGENIC
3L	13368204	3L_13368204_SNP [dm3] 3L_13375104_SNP [dm6]	A	G	2.750e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23517682	3R_23517682_SNP [dm3] 3R_27691960_SNP [dm6]	G	A	2.750e^-4	0.94	SYNONYMOUS_CODING CG12880	TF binding site mE1_TFBS_chinmo
3R	26535150	3R_26535150_SNP [dm3] 3R_30709428_SNP [dm6]	G	A	2.753e^-4	0.94	INTERGENIC
3L	16581485	3L_16581485_SNP [dm3] 3L_16588385_SNP [dm6]	G	A	2.760e^-4	0.94	UPSTREAM l_3_73Ah DOWNSTREAM CG32163 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	12318544	X_12318544_SNP [dm3] X_12424511_SNP [dm6]	T	C	2.772e^-4	0.94	INTERGENIC
X	3861062	X_3861062_SNP [dm3] X_3967029_SNP [dm6]	T	C	2.776e^-4	0.94	SYNONYMOUS_CODING CG6428
3L	17745594	3L_17745594_SNP [dm3] 3L_17752494_SNP [dm6]	G	T	2.781e^-4	0.94	NON_SYNONYMOUS_CODING Adgf-A
2R	19371211	2R_19371211_SNP [dm3] 2R_23483688_SNP [dm6]	C	T	2.790e^-4	0.94	INTRON CG43795	TF binding site mE1_TFBS_chinmo
X	9123892	X_9123892_SNP [dm3] X_9229859_SNP [dm6]	A	C	2.794e^-4	0.94	INTRON CG12121
X	3518497	X_3518497_SNP [dm3] X_3624464_SNP [dm6]	A	G	2.795e^-4	0.94	INTRON AstA-R1
2R	8363002	2R_8363002_SNP [dm3] 2R_12475497_SNP [dm6]	G	C	2.795e^-4	0.94	INTRON Dh44-R2
2L	14799857	2L_14799857_SNP [dm3] 2L_14799857_SNP [dm6]	T	C	2.798e^-4	0.94	INTERGENIC
X	3870944	X_3870944_SNP [dm3] X_3976911_SNP [dm6]	C	T	2.801e^-4	0.94	INTERGENIC
3R	10226008	3R_10226008_SNP [dm3] 3R_14400286_SNP [dm6]	A	G	2.807e^-4	0.94	INTRON cv-c	TF binding site mE1_TFBS_Trl
2L	15207780	2L_15207780_SNP [dm3] 2L_15207780_SNP [dm6]	C	T	2.810e^-4	0.94	UPSTREAM CR44196 INTERGENIC
3R	16425755	3R_16425755_SNP [dm3] 3R_20600033_SNP [dm6]	C	T	2.813e^-4	0.94	INTRON bon
3R	20250569	3R_20250569_SNP [dm3] 3R_24424847_SNP [dm6]	G	A	2.819e^-4	0.94	INTRON nAChRalpha1
3R	23688673	3R_23688673_SNP [dm3] 3R_27862951_SNP [dm6]	C	T	2.826e^-4	0.94	INTRON CG34353
3R	23688694	3R_23688694_DEL [dm3] 3R_27862972_DEL [dm6]	CA	C	2.826e^-4	0.94	INTRON CG34353
3R	23688714	3R_23688714_SNP [dm3] 3R_27862992_SNP [dm6]	A	T	2.826e^-4	0.94	INTRON CG34353
3R	26681935	3R_26681935_SNP [dm3] 3R_30856213_SNP [dm6]	T	A	2.827e^-4	0.94	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21207617	X_21207617_SNP [dm3] X_21336590_SNP [dm6]	T	G	2.831e^-4	0.94	INTRON tty
2L	117109	2L_117109_SNP [dm3] 2L_117109_SNP [dm6]	T	A	2.834e^-4	0.94	UTR_3_PRIME CG4822 UPSTREAM CG13694 DOWNSTREAM CG4822 INTRON CG11455
3R	25273449	3R_25273449_SNP [dm3] 3R_29447727_SNP [dm6]	A	C	2.848e^-4	0.94	INTRON Ptp99A
X	12166782	X_12166782_SNP [dm3] X_12272749_SNP [dm6]	G	A	2.853e^-4	0.94	INTRON Ten-a
3R	19964108	3R_19964108_SNP [dm3] 3R_24138386_SNP [dm6]	G	C	2.853e^-4	0.94	DOWNSTREAM Sec10 INTRON Npc2f	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3907820	3L_3907820_DEL [dm3] 3L_3907820_DEL [dm6]	AGTTT	A	2.853e^-4	0.94	DOWNSTREAM mge & 1 other INTERGENIC
2R	5661164	2R_5661164_SNP [dm3] 2R_9773659_SNP [dm6]	A	G	2.876e^-4	0.94	INTRON CG1688
3R	26169697	3R_26169697_SNP [dm3] 3R_30343975_SNP [dm6]	G	T	2.878e^-4	0.94	INTRON hdc	TF binding site BDTNP1_TFBS_dl
X	8242161	X_8242161_SNP [dm3] X_8348128_SNP [dm6]	A	G	2.880e^-4	0.94	INTRON nAChRalpha3
2L	9086768	2L_9086768_SNP [dm3] 2L_9086768_SNP [dm6]	G	A	2.881e^-4	0.94	NON_SYNONYMOUS_CODING Toll-4
3R	17919871	3R_17919871_SNP [dm3] 3R_22094149_SNP [dm6]	A	T	2.884e^-4	0.94	INTRON CG5778	TF binding site mE1_TFBS_run
2L	19769874	2L_19769874_SNP [dm3] 2L_19769874_SNP [dm6]	G	A	2.887e^-4	0.94	UPSTREAM bsh INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15313058	X_15313058_SNP [dm3] X_15419025_SNP [dm6]	G	T	2.889e^-4	0.94	INTRON Cngl
3L	14120869	3L_14120869_DEL [dm3] 3L_14127769_DEL [dm6]	TTAGCATTCTTT...	T	2.900e^-4	0.94	INTRON Sox21b
2L	19407136	2L_19407136_SNP [dm3] 2L_19407136_SNP [dm6]	C	T	2.912e^-4	0.94	INTRON Pax
2L	6964815	2L_6964815_SNP [dm3] 2L_6964815_SNP [dm6]	G	A	2.925e^-4	0.94	SYNONYMOUS_CODING Coprox UPSTREAM sip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15047971	3R_15047971_SNP [dm3] 3R_19222249_SNP [dm6]	T	G	2.930e^-4	0.94	INTRON vib
3R	14620235	3R_14620235_SNP [dm3] 3R_18794513_SNP [dm6]	C	A	2.934e^-4	0.94	UPSTREAM CG7720 INTRON CG7720
2L	2293416	2L_2293416_SNP [dm3] 2L_2293416_SNP [dm6]	G	C	2.934e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18165534	2R_18165534_SNP [dm3] 2R_22278029_SNP [dm6]	C	T	2.936e^-4	0.94	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10172108	3R_10172108_SNP [dm3] 3R_14346386_SNP [dm6]	A	T	2.938e^-4	0.94	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13510943	2R_13510943_SNP [dm3] 2R_17623438_SNP [dm6]	T	C	2.943e^-4	0.94	INTRON CG10936
X	20724934	X_20724934_SNP [dm3] X_20853907_SNP [dm6]	T	G	2.946e^-4	0.94	INTRON shakB
3R	17919938	3R_17919938_SNP [dm3] 3R_22094216_SNP [dm6]	T	C	2.951e^-4	0.94	INTRON CG5778
3L	22525362	3L_22525362_SNP [dm3] 3L_22532262_SNP [dm6]	A	G	2.952e^-4	0.94	INTERGENIC
X	8990784	X_8990784_SNP [dm3] X_9096751_SNP [dm6]	A	G	2.952e^-4	0.94	INTRON CG7766
3L	22646258	3L_22646258_SNP [dm3] 3L_22653158_SNP [dm6]	C	T	2.954e^-4	0.94	UPSTREAM CG33772 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15667655	2R_15667655_SNP [dm3] 2R_19780150_SNP [dm6]	A	T	2.967e^-4	0.94	INTERGENIC
2L	15005121	2L_15005121_SNP [dm3] 2L_15005121_SNP [dm6]	C	G	2.970e^-4	0.94	UPSTREAM dyn-p25 INTERGENIC
3L	6491859	3L_6491859_SNP [dm3] 3L_6498759_SNP [dm6]	G	C	2.977e^-4	0.94	INTRON sfl	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	17698277	2L_17698277_SNP [dm3] 2L_17698277_SNP [dm6]	A	G	2.978e^-4	0.94	INTRON CadN
2R	6440673	2R_6440673_SNP [dm3] 2R_10553168_SNP [dm6]	A	G	2.984e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	22746230	3R_22746230_SNP [dm3] 3R_26920508_SNP [dm6]	A	C	2.984e^-4	0.94	INTRON sda
2L	5643587	2L_5643587_SNP [dm3] 2L_5643587_SNP [dm6]	C	A	2.988e^-4	0.94	INTRON CG31646
3R	7929479	3R_7929479_SNP [dm3] 3R_12103757_SNP [dm6]	A	G	2.993e^-4	0.94	INTRON dpr17
3R	20777022	3R_20777022_SNP [dm3] 3R_24951300_SNP [dm6]	A	T	2.997e^-4	0.94	INTERGENIC
X	21043592	X_21043592_SNP [dm3] X_21172565_SNP [dm6]	A	G	2.997e^-4	0.94	INTERGENIC	transposable element FlyBase
X	8411134	X_8411134_SNP [dm3] X_8517101_SNP [dm6]	A	C	3.005e^-4	0.94	UPSTREAM Nrg DOWNSTREAM CG33181 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	681813	3L_681813_SNP [dm3] 3L_681813_SNP [dm6]	C	A	3.007e^-4	0.94	INTRON CG3386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13245837	3L_13245837_SNP [dm3] 3L_13252737_SNP [dm6]	A	G	3.008e^-4	0.94	INTRON caps
2R	5654081	2R_5654081_SNP [dm3] 2R_9766576_SNP [dm6]	C	T	3.009e^-4	0.94	NON_SYNONYMOUS_CODING CG1688 EXON CR44205	TF binding site mE1_TFBS_cad
3R	21581607	3R_21581607_SNP [dm3] 3R_25755885_SNP [dm6]	G	A	3.016e^-4	0.94	INTRON LpR1
3R	20777033	3R_20777033_SNP [dm3] 3R_24951311_SNP [dm6]	C	T	3.023e^-4	0.94	INTERGENIC
2R	14696857	2R_14696857_SNP [dm3] 2R_18809352_SNP [dm6]	G	A	3.025e^-4	0.94	SYNONYMOUS_CODING CG15096	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3601015	2L_3601015_SNP [dm3] 2L_3601015_SNP [dm6]	A	G	3.037e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_sens
X	5056494	X_5056494_SNP [dm3] X_5162461_SNP [dm6]	G	C	3.046e^-4	0.94	INTRON rg & 1 other
3L	11667524	3L_11667524_SNP [dm3] 3L_11674424_SNP [dm6]	G	A	3.048e^-4	0.94	SYNONYMOUS_CODING CG32085	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4224881	X_4224881_DEL [dm3] X_4330848_DEL [dm6]	ACT	A	3.049e^-4	0.94	INTRON norpA
3L	683663	3L_683663_SNP [dm3] 3L_683663_SNP [dm6]	G	A	3.053e^-4	0.94	SYNONYMOUS_CODING ebd1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3R	19880006	3R_19880006_SNP [dm3] 3R_24054284_SNP [dm6]	A	G	3.058e^-4	0.94	UPSTREAM CG6000 & 1 other DOWNSTREAM CG5991 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9945468	2R_9945468_SNP [dm3] 2R_14057963_SNP [dm6]	C	T	3.059e^-4	0.94	UTR_3_PRIME mam INTRON mam	TF binding site mE1_TFBS_cad
3R	11010231	3R_11010231_SNP [dm3] 3R_15184509_SNP [dm6]	G	C	3.061e^-4	0.94	INTRON Gyc88E	TF binding site mE1_TFBS_cad
2R	5429105	2R_5429105_SNP [dm3] 2R_9541600_SNP [dm6]	G	A	3.069e^-4	0.94	DOWNSTREAM CG1888 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	10409225	3R_10409225_SNP [dm3] 3R_14583503_SNP [dm6]	C	G	3.076e^-4	0.94	INTRON stumps
3R	14618653	3R_14618653_SNP [dm3] 3R_18792931_SNP [dm6]	T	A	3.078e^-4	0.94	UPSTREAM CG7720 INTRON CG7720
2L	10105324	2L_10105324_SNP [dm3] 2L_10105324_SNP [dm6]	C	G	3.078e^-4	0.94	INTRON CG44153 & 1 other
3L	14049369	3L_14049369_SNP [dm3] 3L_14056269_SNP [dm6]	A	C	3.079e^-4	0.94	INTRON CG32138	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14634258	2R_14634258_SNP [dm3] 2R_18746753_SNP [dm6]	T	C	3.086e^-4	0.94	INTRON Hs3st-A	TF binding site mE1_TFBS_chinmo
3R	26880934	3R_26880934_DEL [dm3] 3R_31055212_DEL [dm6]	TT	T	3.103e^-4	0.94	UTR_3_PRIME dco
2L	16734293	2L_16734293_SNP [dm3] 2L_16734293_SNP [dm6]	T	G	3.112e^-4	0.94	DOWNSTREAM CG17904 INTRON glu	TF binding site mE1_TFBS_sens
3L	11302232	3L_11302232_SNP [dm3] 3L_11309132_SNP [dm6]	G	T	3.124e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
X	21902221	X_21902221_SNP [dm3] X_22500385_SNP [dm6]	A	G	3.124e^-4	0.94	INTRON l_1_G0196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2688774	3L_2688774_DEL [dm3] 3L_2688774_DEL [dm6]	CCTTTC	C	3.131e^-4	0.94	INTRON Fife
X	20724628	X_20724628_SNP [dm3] X_20853601_SNP [dm6]	A	G	3.137e^-4	0.94	INTRON shakB
2L	6227821	2L_6227821_INS [dm3] 2L_6227821_INS [dm6]	A	ATA	3.143e^-4	0.94	DOWNSTREAM Ugt37b1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17530287	2R_17530287_SNP [dm3] 2R_21642782_SNP [dm6]	T	C	3.164e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22526175	3L_22526175_SNP [dm3] 3L_22533075_SNP [dm6]	G	C	3.166e^-4	0.94	INTERGENIC	transposable element FlyBase
2L	11292761	2L_11292761_SNP [dm3] 2L_11292761_SNP [dm6]	T	G	3.170e^-4	0.94	INTERGENIC
2L	6553577	2L_6553577_SNP [dm3] 2L_6553577_SNP [dm6]	C	A	3.171e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8332722	2R_8332722_SNP [dm3] 2R_12445217_SNP [dm6]	A	G	3.174e^-4	0.94	INTRON Dyb	TF binding site mE1_TFBS_chinmo
3R	15047998	3R_15047998_SNP [dm3] 3R_19222276_SNP [dm6]	T	G	3.180e^-4	0.94	INTRON vib
X	9843864	X_9843864_SNP [dm3] X_9949831_SNP [dm6]	G	A	3.185e^-4	0.94	INTERGENIC
3R	17560785	3R_17560785_SNP [dm3] 3R_21735063_SNP [dm6]	A	C	3.186e^-4	0.94	DOWNSTREAM Sfp93F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7498343	2R_7498343_SNP [dm3] 2R_11610838_SNP [dm6]	A	G	3.187e^-4	0.94	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	2338411	X_2338411_SNP [dm3] X_2444378_SNP [dm6]	C	A	3.193e^-4	0.94	UTR_3_PRIME boi UPSTREAM tko	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3R	22130353	3R_22130353_SNP [dm3] 3R_26304631_SNP [dm6]	A	G	3.199e^-4	0.94	INTERGENIC
3R	24993746	3R_24993746_SNP [dm3] 3R_29168024_SNP [dm6]	T	C	3.202e^-4	0.94	SYNONYMOUS_CODING CG11898	TF binding site mE1_TFBS_chinmo
3L	683574	3L_683574_SNP [dm3] 3L_683574_SNP [dm6]	G	T	3.207e^-4	0.94	NON_SYNONYMOUS_CODING ebd1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	14313873	2R_14313873_SNP [dm3] 2R_18426368_SNP [dm6]	A	C	3.209e^-4	0.94	UPSTREAM CG12263 DOWNSTREAM CG5174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18866287	3L_18866287_SNP [dm3] 3L_18873187_SNP [dm6]	T	A	3.210e^-4	0.94	UPSTREAM Rad9 INTRON Ugt
X	20723306	X_20723306_SNP [dm3] X_20852279_SNP [dm6]	C	T	3.214e^-4	0.94	INTRON shakB
2R	8384366	2R_8384366_SNP [dm3] 2R_12496861_SNP [dm6]	G	C	3.217e^-4	0.94	INTRON fdl & 1 other	TF binding site mE1_TFBS_inv
2L	6159883	2L_6159883_SNP [dm3] 2L_6159883_SNP [dm6]	C	T	3.220e^-4	0.94	UPSTREAM CG13989 INTERGENIC
3R	26753705	3R_26753705_SNP [dm3] 3R_30927983_SNP [dm6]	T	G	3.222e^-4	0.94	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	17406239	3L_17406239_SNP [dm3] 3L_17413139_SNP [dm6]	G	T	3.227e^-4	0.94	INTRON blot	TF binding site mE1_TFBS_HSA
3R	21780716	3R_21780716_SNP [dm3] 3R_25954994_SNP [dm6]	T	C	3.236e^-4	0.94	INTRON CCAP-R	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	22823035	3R_22823035_SNP [dm3] 3R_26997313_SNP [dm6]	C	A	3.238e^-4	0.94	UTR_5_PRIME RYa-R DOWNSTREAM TwdlC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14842731	3R_14842731_SNP [dm3] 3R_19017009_SNP [dm6]	C	A	3.244e^-4	0.94	SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
3L	13157570	3L_13157570_INS [dm3] 3L_13164470_INS [dm6]	C	GGAGGA	3.249e^-4	0.94	INTERGENIC
2L	3644493	2L_3644493_SNP [dm3] 2L_3644493_SNP [dm6]	C	T	3.256e^-4	0.94	INTRON for
3R	18788191	3R_18788191_SNP [dm3] 3R_22962469_SNP [dm6]	A	G	3.257e^-4	0.94	DOWNSTREAM klg INTERGENIC
2R	17280566	2R_17280566_SNP [dm3] 2R_21393061_SNP [dm6]	T	A	3.268e^-4	0.94	UTR_3_PRIME Sdc DOWNSTREAM Acox57D-d & 1 other
3R	10864417	3R_10864417_SNP [dm3] 3R_15038695_SNP [dm6]	A	T	3.270e^-4	0.94	DOWNSTREAM RpL10Aa EXON CR44944	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15667647	2R_15667647_SNP [dm3] 2R_19780142_SNP [dm6]	T	A	3.271e^-4	0.94	INTERGENIC
3R	21091784	3R_21091784_SNP [dm3] 3R_25266062_SNP [dm6]	G	T	3.275e^-4	0.94	SYNONYMOUS_CODING RIOK2 UPSTREAM Aats-gln DOWNSTREAM CR45214	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5696879	3R_5696879_SNP [dm3] 3R_9871157_SNP [dm6]	C	G	3.275e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_sens
2L	20763319	2L_20763319_SNP [dm3] 2L_20763319_SNP [dm6]	C	A	3.276e^-4	0.94	INTRON dia
3L	5326996	3L_5326996_SNP [dm3] 3L_5333896_SNP [dm6]	C	T	3.282e^-4	0.94	UPSTREAM CR45742 INTERGENIC
2L	11201042	2L_11201042_SNP [dm3] 2L_11201042_SNP [dm6]	A	G	3.294e^-4	0.94	INTRON Ca-beta
2R	8362904	2R_8362904_SNP [dm3] 2R_12475399_SNP [dm6]	T	A	3.301e^-4	0.94	INTRON Dh44-R2
3R	20861859	3R_20861859_SNP [dm3] 3R_25036137_SNP [dm6]	G	A	3.302e^-4	0.94	SYNONYMOUS_CODING CG6422 UPSTREAM CG31115	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17745109	3L_17745109_SNP [dm3] 3L_17752009_SNP [dm6]	A	G	3.302e^-4	0.94	UTR_3_PRIME Adgf-A
2L	3325669	2L_3325669_SNP [dm3] 2L_3325669_SNP [dm6]	A	T	3.324e^-4	0.94	INTRON CG33281
2R	15067379	2R_15067379_SNP [dm3] 2R_19179874_SNP [dm6]	A	T	3.325e^-4	0.94	INTRON hppy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	16229900	X_16229900_SNP [dm3] X_16335867_SNP [dm6]	C	T	3.340e^-4	0.94	UPSTREAM Dsp1 INTRON Dsp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D
2R	8918240	2R_8918240_SNP [dm3] 2R_13030735_SNP [dm6]	C	T	3.353e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_sens
3R	2714964	3R_2714964_SNP [dm3] 3R_6889242_SNP [dm6]	T	C	3.354e^-4	0.94	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11238479	X_11238479_SNP [dm3] X_11344446_SNP [dm6]	C	T	3.359e^-4	0.94	UTR_3_PRIME CG34348 DOWNSTREAM CG1597
3L	16320668	3L_16320668_SNP [dm3] 3L_16327568_SNP [dm6]	T	C	3.360e^-4	0.94	NON_SYNONYMOUS_CODING CG13038 UPSTREAM CG13040 & 1 other
3R	26037375	3R_26037375_SNP [dm3] 3R_30211653_SNP [dm6]	A	G	3.386e^-4	0.94	UPSTREAM CecA2 DOWNSTREAM CecA1 INTRON Cec-Psi1
3R	26037380	3R_26037380_SNP [dm3] 3R_30211658_SNP [dm6]	C	T	3.386e^-4	0.94	UPSTREAM CecA2 DOWNSTREAM CecA1 INTRON Cec-Psi1
3R	6367514	3R_6367514_DEL [dm3] 3R_10541792_DEL [dm6]	TTCCA	T	3.387e^-4	0.94	INTRON hth	TF binding site BDTNP1_TFBS_dl
3R	24968552	3R_24968552_SNP [dm3] 3R_29142830_SNP [dm6]	C	A	3.390e^-4	0.94	NON_SYNONYMOUS_CODING CG14516	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8200804	X_8200804_SNP [dm3] X_8306771_SNP [dm6]	T	A	3.390e^-4	0.94	SYNONYMOUS_CODING nAChRalpha3
X	5005243	X_5005243_SNP [dm3] X_5111210_SNP [dm6]	C	A	3.393e^-4	0.94	INTRON rg & 1 other
3R	6366222	3R_6366222_SNP [dm3] 3R_10540500_SNP [dm6]	C	T	3.400e^-4	0.94	INTRON hth	TF binding site mE1_TFBS_cad
X	10349332	X_10349332_SNP [dm3] X_10455299_SNP [dm6]	G	A	3.412e^-4	0.94	UPSTREAM CG32683 INTERGENIC
2R	17839414	2R_17839414_SNP [dm3] 2R_21951909_SNP [dm6]	T	G	3.415e^-4	0.94	NON_SYNONYMOUS_CODING CG13488
2L	3321726	2L_3321726_SNP [dm3] 2L_3321726_SNP [dm6]	C	T	3.418e^-4	0.94	SYNONYMOUS_CODING CG8837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26169657	3R_26169657_DEL [dm3] 3R_30343935_DEL [dm6]	TATTGTAG	T	3.419e^-4	0.94	INTRON hdc	TF binding site BDTNP1_TFBS_dl
3L	1023852	3L_1023852_SNP [dm3] 3L_1023852_SNP [dm6]	A	G	3.419e^-4	0.94	UPSTREAM trio INTRON trio
3L	2352974	3L_2352974_INS [dm3] 3L_2352974_INS [dm6]	A	AAG	3.420e^-4	0.94	INTERGENIC
3R	20861898	3R_20861898_SNP [dm3] 3R_25036176_SNP [dm6]	G	A	3.421e^-4	0.94	SYNONYMOUS_CODING CG6422 UPSTREAM CG31115	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1751907	3L_1751907_SNP [dm3] 3L_1751907_SNP [dm6]	A	T	3.428e^-4	0.94	UTR_3_PRIME CG13921 DOWNSTREAM Cht2
3R	27136552	3R_27136552_SNP [dm3] 3R_31310830_SNP [dm6]	T	G	3.429e^-4	0.94	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	1697346	3L_1697346_SNP [dm3] 3L_1697346_SNP [dm6]	G	A	3.435e^-4	0.94	DOWNSTREAM CG12011 INTRON CG7991
3L	8807792	3L_8807792_SNP [dm3] 3L_8814692_SNP [dm6]	A	C	3.440e^-4	0.94	INTERGENIC
3R	7929482	3R_7929482_SNP [dm3] 3R_12103760_SNP [dm6]	C	A	3.453e^-4	0.94	INTRON dpr17
3R	16885004	3R_16885004_SNP [dm3] 3R_21059282_SNP [dm6]	A	G	3.456e^-4	0.94	UTR_5_PRIME Mvl INTRON Mvl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	107389	2L_107389_SNP [dm3] 2L_107389_SNP [dm6]	C	T	3.469e^-4	0.94	UPSTREAM Nhe1 & 1 other INTRON Sam-S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26680907	3R_26680907_SNP [dm3] 3R_30855185_SNP [dm6]	A	G	3.470e^-4	0.94	DOWNSTREAM tll INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16489348	3L_16489348_SNP [dm3] 3L_16496248_SNP [dm6]	T	A	3.472e^-4	0.94	UPSTREAM CG42514 INTRON CG33158 & 1 other
X	20725473	X_20725473_SNP [dm3] X_20854446_SNP [dm6]	T	G	3.476e^-4	0.94	INTRON shakB
2L	22136847	2L_22136847_SNP [dm3] 2L_22136847_SNP [dm6]	C	G	3.476e^-4	0.94	INTRON CG42748
3L	3800557	3L_3800557_SNP [dm3] 3L_3800557_SNP [dm6]	G	C	3.478e^-4	0.94	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26169667	3R_26169667_SNP [dm3] 3R_30343945_SNP [dm6]	G	A	3.479e^-4	0.94	INTRON hdc	TF binding site BDTNP1_TFBS_dl
3R	21126212	3R_21126212_SNP [dm3] 3R_25300490_SNP [dm6]	A	T	3.484e^-4	0.94	UPSTREAM CG31288 & 1 other INTERGENIC
X	11365192	X_11365192_SNP [dm3] X_11471159_SNP [dm6]	A	T	3.489e^-4	0.94	INTRON CG43155
2R	16213706	2R_16213706_SNP [dm3] 2R_20326201_SNP [dm6]	C	T	3.492e^-4	0.94	SYNONYMOUS_CODING MED8 DOWNSTREAM CG8920	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	659443	3L_659443_SNP [dm3] 3L_659443_SNP [dm6]	G	A	3.492e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	10226018	3R_10226018_SNP [dm3] 3R_14400296_SNP [dm6]	T	C	3.493e^-4	0.94	INTRON cv-c	TF binding site mE1_TFBS_Trl
2L	14253548	2L_14253548_SNP [dm3] 2L_14253548_SNP [dm6]	G	A	3.495e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8808525	2L_8808525_SNP [dm3] 2L_8808525_SNP [dm6]	C	T	3.506e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	10773932	X_10773932_SNP [dm3] X_10879899_SNP [dm6]	A	G	3.508e^-4	0.94	SYNONYMOUS_CODING Ork1	TF binding site mE1_TFBS_chinmo
3L	1977791	3L_1977791_SNP [dm3] 3L_1977791_SNP [dm6]	T	A	3.515e^-4	0.94	INTERGENIC
X	9834328	X_9834328_SNP [dm3] X_9940295_SNP [dm6]	G	A	3.520e^-4	0.94	INTERGENIC
X	8372626	X_8372626_SNP [dm3] X_8478593_SNP [dm6]	A	G	3.533e^-4	0.94	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223	regulatory region REDfly_CRMs
X	9126675	X_9126675_SNP [dm3] X_9232642_SNP [dm6]	G	T	3.535e^-4	0.94	UPSTREAM CG12121 DOWNSTREAM Ir8a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	18152242	3L_18152242_SNP [dm3] 3L_18159142_SNP [dm6]	A	G	3.539e^-4	0.94	NON_SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	16501088	2L_16501088_SNP [dm3] 2L_16501088_SNP [dm6]	T	A	3.552e^-4	0.94	UPSTREAM Tpr2 INTRON Tpr2	TF binding site mE1_TFBS_HSA
3R	3449386	3R_3449386_SNP [dm3] 3R_7623664_SNP [dm6]	A	G	3.556e^-4	0.94	INTRON CG34127	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	21586902	3R_21586902_SNP [dm3] 3R_25761180_SNP [dm6]	A	G	3.558e^-4	0.94	UPSTREAM LpR1 INTRON LpR1
2L	3226099	2L_3226099_SNP [dm3] 2L_3226099_SNP [dm6]	C	T	3.562e^-4	0.94	INTERGENIC
2L	7491786	2L_7491786_INS [dm3] 2L_7491786_INS [dm6]	C	CAA	3.563e^-4	0.94	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	3889665	2L_3889665_SNP [dm3] 2L_3889665_SNP [dm6]	G	C	3.564e^-4	0.94	NON_SYNONYMOUS_CODING capu UTR_5_PRIME capu UPSTREAM capu INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_kn mE1_TFBS_ttk
3R	25780246	3R_25780246_SNP [dm3] 3R_29954524_SNP [dm6]	A	T	3.569e^-4	0.94	INTRON TkR99D
X	9119192	X_9119192_SNP [dm3] X_9225159_SNP [dm6]	T	A	3.582e^-4	0.94	UPSTREAM CG15370 INTERGENIC
3R	22733136	3R_22733136_SNP [dm3] 3R_26907414_SNP [dm6]	T	A	3.593e^-4	0.94	INTRON T48
3R	17943288	3R_17943288_SNP [dm3] 3R_22117566_SNP [dm6]	T	C	3.593e^-4	0.94	UPSTREAM Ir94b DOWNSTREAM Ir94c INTERGENIC
2L	7495773	2L_7495773_SNP [dm3] 2L_7495773_SNP [dm6]	A	G	3.596e^-4	0.94	UTR_5_PRIME Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26034910	3R_26034910_SNP [dm3] 3R_30209188_SNP [dm6]	A	G	3.600e^-4	0.94	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16120227	2L_16120227_SNP [dm3] 2L_16120227_SNP [dm6]	G	A	3.605e^-4	0.94	INTERGENIC
3L	16458605	3L_16458605_SNP [dm3] 3L_16465505_SNP [dm6]	G	C	3.607e^-4	0.94	INTRON CG33158
X	1819623	X_1819623_SNP [dm3] X_1925590_SNP [dm6]	A	C	3.610e^-4	0.94	SYNONYMOUS_CODING Ocrl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1671705	2L_1671705_SNP [dm3] 2L_1671705_SNP [dm6]	A	G	3.612e^-4	0.94	INTRON chinmo
3L	7728796	3L_7728796_SNP [dm3] 3L_7735696_SNP [dm6]	C	T	3.626e^-4	0.94	INTRON CG32373 & 1 other
2R	12262111	2R_12262111_SNP [dm3] 2R_16374606_SNP [dm6]	A	T	3.640e^-4	0.94	INTERGENIC
2R	19505939	2R_19505939_SNP [dm3] 2R_23618416_SNP [dm6]	C	A	3.644e^-4	0.94	INTERGENIC
2L	10199493	2L_10199493_SNP [dm3] 2L_10199493_SNP [dm6]	A	C	3.656e^-4	0.94	UTR_3_PRIME Ripalpha UPSTREAM Sur
2L	15097031	2L_15097031_SNP [dm3] 2L_15097031_SNP [dm6]	A	G	3.676e^-4	0.94	DOWNSTREAM CG15270 INTERGENIC
3R	21579943	3R_21579943_SNP [dm3] 3R_25754221_SNP [dm6]	T	A	3.677e^-4	0.94	INTRON LpR1
2L	20293157	2L_20293157_SNP [dm3] 2L_20293157_SNP [dm6]	A	G	3.693e^-4	0.94	INTERGENIC
2R	19505523	2R_19505523_SNP [dm3] 2R_23618000_SNP [dm6]	G	T	3.698e^-4	0.94	INTERGENIC
3L	15391743	3L_15391743_SNP [dm3] 3L_15398643_SNP [dm6]	T	G	3.709e^-4	0.94	INTERGENIC
3R	16943609	3R_16943609_SNP [dm3] 3R_21117887_SNP [dm6]	A	G	3.719e^-4	0.94	UTR_3_PRIME ppan & 1 other	TF binding site mE1_TFBS_cad
3R	26032650	3R_26032650_SNP [dm3] 3R_30206928_SNP [dm6]	T	C	3.720e^-4	0.94	UPSTREAM snoRNA:Psi28S-2149 DOWNSTREAM snoRNA:Psi18S-1377e & 5 others INTRON RpS7
2L	8334626	2L_8334626_SNP [dm3] 2L_8334626_SNP [dm6]	A	C	3.720e^-4	0.94	INTERGENIC
3L	18868479	3L_18868479_SNP [dm3] 3L_18875379_SNP [dm6]	C	G	3.728e^-4	0.94	SYNONYMOUS_CODING Ugt	TF binding site mE1_TFBS_sens
2R	5289179	2R_5289179_SNP [dm3] 2R_9401674_SNP [dm6]	T	C	3.729e^-4	0.94	DOWNSTREAM wun INTRON wun
2L	6957421	2L_6957421_SNP [dm3] 2L_6957421_SNP [dm6]	C	T	3.740e^-4	0.94	SYNONYMOUS_CODING CG3430 UPSTREAM CG13775	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26169696	3R_26169696_SNP [dm3] 3R_30343974_SNP [dm6]	A	T	3.740e^-4	0.94	INTRON hdc	TF binding site BDTNP1_TFBS_dl
3R	9651054	3R_9651054_SNP [dm3] 3R_13825332_SNP [dm6]	A	C	3.741e^-4	0.94	INTERGENIC
2R	5653679	2R_5653679_SNP [dm3] 2R_9766174_SNP [dm6]	A	T	3.746e^-4	0.94	UPSTREAM CR44205 DOWNSTREAM CG1688 & 1 other INTERGENIC
3R	18525550	3R_18525550_SNP [dm3] 3R_22699828_SNP [dm6]	G	A	3.754e^-4	0.94	NON_SYNONYMOUS_CODING Cyp6d4 DOWNSTREAM CCAP
2R	5287367	2R_5287367_SNP [dm3] 2R_9399862_SNP [dm6]	A	G	3.756e^-4	0.94	SYNONYMOUS_CODING CG33774 UTR_3_PRIME l_2_k10201 DOWNSTREAM wun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	6435284	2R_6435284_SNP [dm3] 2R_10547779_SNP [dm6]	G	T	3.760e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10022329	2R_10022329_SNP [dm3] 2R_14134824_SNP [dm6]	G	A	3.762e^-4	0.94	INTRON Prosap
3L	12934630	3L_12934630_SNP [dm3] 3L_12941530_SNP [dm6]	A	T	3.767e^-4	0.94	INTERGENIC
2L	11201030	2L_11201030_SNP [dm3] 2L_11201030_SNP [dm6]	A	C	3.770e^-4	0.94	INTRON Ca-beta
3R	9651073	3R_9651073_SNP [dm3] 3R_13825351_SNP [dm6]	A	T	3.772e^-4	0.94	INTERGENIC
3L	18187038	3L_18187038_SNP [dm3] 3L_18193938_SNP [dm6]	T	A	3.774e^-4	0.94	INTERGENIC
2L	7493685	2L_7493685_SNP [dm3] 2L_7493685_SNP [dm6]	A	C	3.779e^-4	0.94	INTRON Ziz
X	20722651	X_20722651_SNP [dm3] X_20851624_SNP [dm6]	G	C	3.788e^-4	0.94	INTRON shakB
2R	19104739	2R_19104739_DEL [dm3] 2R_23217216_DEL [dm6]	GGTCTA	T	3.801e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1854543	3L_1854543_DEL [dm3] 3L_1854543_DEL [dm6]	GGGCGCTAAAA...	C	3.822e^-4	0.94	INTRON CG13936
2L	17492969	2L_17492969_SNP [dm3] 2L_17492969_SNP [dm6]	T	C	3.832e^-4	0.94	UPSTREAM qua INTRON qua
3R	22156722	3R_22156722_SNP [dm3] 3R_26331000_SNP [dm6]	G	T	3.833e^-4	0.94	INTRON CG33970
X	3870895	X_3870895_SNP [dm3] X_3976862_SNP [dm6]	A	G	3.837e^-4	0.94	INTERGENIC
2R	11849161	2R_11849161_SNP [dm3] 2R_15961656_SNP [dm6]	G	A	3.849e^-4	0.94	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1199854	2L_1199854_SNP [dm3] 2L_1199854_SNP [dm6]	C	A	3.867e^-4	0.94	UTR_3_PRIME CG43348 UPSTREAM CG43349 & 2 others DOWNSTREAM CG43348
2L	551207	2L_551207_SNP [dm3] 2L_551207_SNP [dm6]	G	A	3.867e^-4	0.94	SYNONYMOUS_CODING Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7778589	2R_7778589_SNP [dm3] 2R_11891084_SNP [dm6]	C	T	3.875e^-4	0.94	UPSTREAM Ef1alpha48D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	680659	3L_680659_INS [dm3] 3L_680659_INS [dm6]	T	TCTGTTTAGTTTAGTACACT...	3.877e^-4	0.94	UTR_3_PRIME CG3386 UPSTREAM CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	3518514	X_3518514_SNP [dm3] X_3624481_SNP [dm6]	T	A	3.885e^-4	0.94	INTRON AstA-R1
2R	6993126	2R_6993126_SNP [dm3] 2R_11105621_SNP [dm6]	G	C	3.890e^-4	0.94	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	2316461	3L_2316461_SNP [dm3] 3L_2316461_SNP [dm6]	G	A	3.891e^-4	0.94	DOWNSTREAM CR45427 INTERGENIC
2L	3587773	2L_3587773_SNP [dm3] 2L_3587773_SNP [dm6]	T	G	3.892e^-4	0.94	DOWNSTREAM CR43823 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	3505283	3R_3505283_SNP [dm3] 3R_7679561_SNP [dm6]	G	T	3.893e^-4	0.94	INTRON Nlg1
3R	15132426	3R_15132426_SNP [dm3] 3R_19306704_SNP [dm6]	A	C	3.915e^-4	0.94	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	15048848	3R_15048848_SNP [dm3] 3R_19223126_SNP [dm6]	A	G	3.918e^-4	0.94	INTRON vib
2L	6971567	2L_6971567_SNP [dm3] 2L_6971567_SNP [dm6]	A	G	3.923e^-4	0.94	UPSTREAM CR43142 INTRON snRNP-U1-70K	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	14618696	3R_14618696_SNP [dm3] 3R_18792974_SNP [dm6]	T	C	3.924e^-4	0.94	UPSTREAM CG7720 INTRON CG7720
3R	559652	3R_559652_SNP [dm3] 3R_4733930_SNP [dm6]	C	T	3.946e^-4	0.94	UTR_3_PRIME tacc DOWNSTREAM tacc
3L	19207316	3L_19207316_SNP [dm3] 3L_19214216_SNP [dm6]	A	T	3.948e^-4	0.94	INTRON fz2
3R	21410007	3R_21410007_SNP [dm3] 3R_25584285_SNP [dm6]	G	A	3.962e^-4	0.94	UTR_5_PRIME msi INTRON msi
2R	17403724	2R_17403724_SNP [dm3] 2R_21516219_SNP [dm6]	T	A	4.001e^-4	0.94	SYNONYMOUS_CODING MESK2 DOWNSTREAM CG10494
3R	22777924	3R_22777924_SNP [dm3] 3R_26952202_SNP [dm6]	C	T	4.009e^-4	0.94	INTRON CG6330	TF binding site BDTNP1_TFBS_da
3L	11875795	3L_11875795_SNP [dm3] 3L_11882695_SNP [dm6]	G	A	4.010e^-4	0.94	SYNONYMOUS_CODING CCDC151 INTRON CG44837
2L	22137183	2L_22137183_SNP [dm3] 2L_22137183_SNP [dm6]	G	A	4.018e^-4	0.94	INTRON CG42748
2L	15205250	2L_15205250_SNP [dm3] 2L_15205250_SNP [dm6]	T	G	4.021e^-4	0.94	INTERGENIC
X	5905359	X_5905359_DEL [dm3] X_6011326_DEL [dm6]	AGA	A	4.022e^-4	0.94	INTRON mab-21	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	5905372	X_5905372_SNP [dm3] X_6011339_SNP [dm6]	A	T	4.022e^-4	0.94	INTRON mab-21	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	13430666	2L_13430666_SNP [dm3] 2L_13430666_SNP [dm6]	C	T	4.031e^-4	0.94	INTRON CG42784
3R	567443	3R_567443_SNP [dm3] 3R_4741721_SNP [dm6]	C	A	4.032e^-4	0.94	INTRON tacc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2226716	3R_2226716_DEL [dm3] 3R_6400994_DEL [dm6]	GACTGTCGTGTTCAG...	G	4.036e^-4	0.94	INTRON Dmtn	TF binding site BDTNP1_TFBS_dl
X	9825959	X_9825959_SNP [dm3] X_9931926_SNP [dm6]	A	C	4.043e^-4	0.94	UPSTREAM Idgf4 INTERGENIC
X	8795237	X_8795237_SNP [dm3] X_8901204_SNP [dm6]	C	G	4.043e^-4	0.94	UPSTREAM CG1885 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13154288	2R_13154288_SNP [dm3] 2R_17266783_SNP [dm6]	A	T	4.046e^-4	0.94	INTRON mbl	TF binding site BDTNP1_TFBS_z
3L	11875853	3L_11875853_SNP [dm3] 3L_11882753_SNP [dm6]	G	C	4.056e^-4	0.94	INTRON CG44837 & 1 other
3R	26752913	3R_26752913_SNP [dm3] 3R_30927191_SNP [dm6]	C	T	4.057e^-4	0.94	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	3845179	3L_3845179_DEL [dm3] 3L_3845179_DEL [dm6]	CCACTGGCATC...	C	4.063e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	13221361	2L_13221361_SNP [dm3] 2L_13221361_SNP [dm6]	C	T	4.064e^-4	0.94	UTR_3_PRIME CG5705 DOWNSTREAM Ski6	TF binding site BDTNP1_TFBS_Med
2R	13698832	2R_13698832_SNP [dm3] 2R_17811327_SNP [dm6]	G	A	4.066e^-4	0.94	INTRON grh	TF binding site mE1_TFBS_chinmo
X	14757626	X_14757626_SNP [dm3] X_14863593_SNP [dm6]	A	G	4.067e^-4	0.94	UTR_3_PRIME CG9518 INTRON Flo2
2L	15005216	2L_15005216_INS [dm3] 2L_15005216_INS [dm6]	C	CCCCGCC	4.076e^-4	0.94	UPSTREAM dyn-p25 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	13366808	X_13366808_SNP [dm3] X_13472775_SNP [dm6]	G	T	4.086e^-4	0.94	INTRON Neto
2R	15815254	2R_15815254_SNP [dm3] 2R_19927749_SNP [dm6]	G	A	4.092e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	16728133	3L_16728133_SNP [dm3] 3L_16735033_SNP [dm6]	C	T	4.100e^-4	0.94	INTRON CG9701
3L	18888204	3L_18888204_INS [dm3] 3L_18895104_INS [dm6]	A	AA	4.115e^-4	0.94	INTRON CG3902
3L	2803843	3L_2803843_SNP [dm3] 3L_2803843_SNP [dm6]	A	G	4.122e^-4	0.94	INTRON CG43444
3L	16162757	3L_16162757_SNP [dm3] 3L_16169657_SNP [dm6]	C	G	4.126e^-4	0.94	INTRON CG33796
X	15421596	X_15421596_SNP [dm3] X_15527563_SNP [dm6]	C	T	4.144e^-4	0.94	INTRON Ac13E
2R	12262130	2R_12262130_SNP [dm3] 2R_16374625_SNP [dm6]	T	A	4.145e^-4	0.94	INTERGENIC
3R	4899436	3R_4899436_SNP [dm3] 3R_9073714_SNP [dm6]	C	G	4.145e^-4	0.94	INTRON pum
3L	11897675	3L_11897675_SNP [dm3] 3L_11904575_SNP [dm6]	G	A	4.148e^-4	0.94	INTRON CG44837
3L	15391680	3L_15391680_SNP [dm3] 3L_15398580_SNP [dm6]	G	A	4.151e^-4	0.94	INTERGENIC
3R	26169672	3R_26169672_SNP [dm3] 3R_30343950_SNP [dm6]	T	C	4.154e^-4	0.94	INTRON hdc	TF binding site BDTNP1_TFBS_dl
3R	26169674	3R_26169674_SNP [dm3] 3R_30343952_SNP [dm6]	A	T	4.154e^-4	0.94	INTRON hdc	TF binding site BDTNP1_TFBS_dl
3R	10534838	3R_10534838_SNP [dm3] 3R_14709116_SNP [dm6]	G	T	4.167e^-4	0.94	INTRON kibra
2L	22017677	2L_22017677_SNP [dm3] 2L_22017677_SNP [dm6]	G	A	4.177e^-4	0.94	DOWNSTREAM CG31693 INTERGENIC
X	21207013	X_21207013_SNP [dm3] X_21335986_SNP [dm6]	T	A	4.185e^-4	0.94	INTRON tty	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23263870	3R_23263870_SNP [dm3] 3R_27438148_SNP [dm6]	C	G	4.189e^-4	0.94	UPSTREAM side DOWNSTREAM CG44290 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6767656	3L_6767656_SNP [dm3] 3L_6774556_SNP [dm6]	T	A	4.208e^-4	0.94	INTERGENIC	regulatory region REDfly_CRMs
3R	19072131	3R_19072131_SNP [dm3] 3R_23246409_SNP [dm6]	C	T	4.210e^-4	0.94	INTRON CG4467
3R	13727837	3R_13727837_SNP [dm3] 3R_17902115_SNP [dm6]	T	A	4.215e^-4	0.94	INTRON Rim
X	3871861	X_3871861_SNP [dm3] X_3977828_SNP [dm6]	A	T	4.219e^-4	0.94	INTERGENIC
3R	26720384	3R_26720384_SNP [dm3] 3R_30894662_SNP [dm6]	C	T	4.220e^-4	0.94	INTRON Cyp4c3	TF binding site mE1_TFBS_HSA
3L	13612593	3L_13612593_INS [dm3] 3L_13619493_INS [dm6]	T	TT	4.221e^-4	0.94	INTRON bru-3
3R	15049686	3R_15049686_SNP [dm3] 3R_19223964_SNP [dm6]	T	C	4.227e^-4	0.94	INTRON vib
2R	5653680	2R_5653680_SNP [dm3] 2R_9766175_SNP [dm6]	T	C	4.228e^-4	0.94	UPSTREAM CR44205 DOWNSTREAM CG1688 & 1 other INTERGENIC
2L	1082711	2L_1082711_SNP [dm3] 2L_1082711_SNP [dm6]	A	G	4.236e^-4	0.94	DOWNSTREAM CG4629 INTRON Atg4a	TF binding site mE1_TFBS_inv
2L	6553586	2L_6553586_SNP [dm3] 2L_6553586_SNP [dm6]	A	C	4.240e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	6219096	X_6219096_SNP [dm3] X_6325063_SNP [dm6]	T	G	4.240e^-4	0.94	NON_SYNONYMOUS_CODING CG15894	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13615169	2L_13615169_SNP [dm3] 2L_13615169_SNP [dm6]	C	T	4.243e^-4	0.94	INTRON kuz
3R	16498175	3R_16498175_SNP [dm3] 3R_20672453_SNP [dm6]	G	T	4.245e^-4	0.94	UTR_3_PRIME Cpr92F
X	17303174	X_17303174_SNP [dm3] X_17409141_SNP [dm6]	C	T	4.246e^-4	0.94	INTERGENIC
X	10349476	X_10349476_SNP [dm3] X_10455443_SNP [dm6]	C	A	4.246e^-4	0.94	UPSTREAM CG32683 INTERGENIC
X	12506445	X_12506445_SNP [dm3] X_12612412_SNP [dm6]	C	G	4.254e^-4	0.94	UTR_5_PRIME CG2543 UPSTREAM CG2543 & 1 other DOWNSTREAM CR45621 EXON CR45621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	20865778	2L_20865778_SNP [dm3] 2L_20865778_SNP [dm6]	T	G	4.255e^-4	0.94	INTRON CG9338	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	6288984	3L_6288984_SNP [dm3] 3L_6295884_SNP [dm6]	C	T	4.265e^-4	0.94	INTERGENIC
3L	12937090	3L_12937090_SNP [dm3] 3L_12943990_SNP [dm6]	G	A	4.273e^-4	0.94	INTERGENIC
3L	1293301	3L_1293301_SNP [dm3] 3L_1293301_SNP [dm6]	C	T	4.274e^-4	0.94	SYNONYMOUS_CODING CG32333
2R	13808587	2R_13808587_SNP [dm3] 2R_17921082_SNP [dm6]	C	T	4.286e^-4	0.94	INTRON Elk
2L	3321052	2L_3321052_SNP [dm3] 2L_3321052_SNP [dm6]	A	G	4.310e^-4	0.94	INTRON CG8837
2L	15207649	2L_15207649_SNP [dm3] 2L_15207649_SNP [dm6]	T	A	4.315e^-4	0.94	UPSTREAM CR44196 INTERGENIC
2L	145999	2L_145999_SNP [dm3] 2L_145999_SNP [dm6]	T	A	4.324e^-4	0.94	INTRON CG11455 & 1 other
X	13435522	X_13435522_SNP [dm3] X_13541489_SNP [dm6]	A	C	4.332e^-4	0.94	INTERGENIC
2R	13957647	2R_13957647_SNP [dm3] 2R_18070142_SNP [dm6]	T	C	4.339e^-4	0.94	INTRON CG34386
2L	22137356	2L_22137356_SNP [dm3] 2L_22137356_SNP [dm6]	T	G	4.342e^-4	0.94	INTRON CG42748
3L	8882464	3L_8882464_SNP [dm3] 3L_8889364_SNP [dm6]	C	G	4.354e^-4	0.94	UTR_3_PRIME dally UPSTREAM CG43169
3L	10799918	3L_10799918_SNP [dm3] 3L_10806818_SNP [dm6]	C	A	4.366e^-4	0.94	UPSTREAM CR44347 INTERGENIC
X	5905903	X_5905903_SNP [dm3] X_6011870_SNP [dm6]	A	T	4.368e^-4	0.94	INTRON mab-21
X	12019798	X_12019798_SNP [dm3] X_12125765_SNP [dm6]	G	T	4.370e^-4	0.94	INTRON Ten-a
2R	4579896	2R_4579896_SNP [dm3] 2R_8692391_SNP [dm6]	C	T	4.374e^-4	0.94	UTR_3_PRIME Jon44E DOWNSTREAM CG8586 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4579910	2R_4579910_SNP [dm3] 2R_8692405_SNP [dm6]	G	T	4.374e^-4	0.94	UTR_3_PRIME Jon44E DOWNSTREAM CG8586 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16391391	2L_16391391_INS [dm3] 2L_16391391_INS [dm6]	C	CAGTC	4.375e^-4	0.94	INTERGENIC
2L	7511042	2L_7511042_SNP [dm3] 2L_7511042_SNP [dm6]	G	T	4.379e^-4	0.94	INTRON RapGAP1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11551455	X_11551455_SNP [dm3] X_11657422_SNP [dm6]	C	T	4.380e^-4	0.94	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7203103	3L_7203103_INS [dm3] 3L_7210003_INS [dm6]	T	TGAATATCA	4.380e^-4	0.94	INTERGENIC
2R	11113978	2R_11113978_SNP [dm3] 2R_15226473_SNP [dm6]	A	G	4.384e^-4	0.94	UPSTREAM CR44370 INTRON Fs	TF binding site mE1_TFBS_cad
X	21207622	X_21207622_SNP [dm3] X_21336595_SNP [dm6]	T	C	4.389e^-4	0.94	INTRON tty
3R	22905245	3R_22905245_SNP [dm3] 3R_27079523_SNP [dm6]	A	G	4.399e^-4	0.94	INTRON CG14257	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	845380	2R_845380_SNP [dm3] 2R_4957875_SNP [dm6]	T	A	4.414e^-4	0.94	INTRON Ir41a	transposable element FlyBase
3L	12779743	3L_12779743_SNP [dm3] 3L_12786643_SNP [dm6]	C	T	4.417e^-4	0.94	SYNONYMOUS_CODING Atg1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23767035	3R_23767035_SNP [dm3] 3R_27941313_SNP [dm6]	T	C	4.420e^-4	0.94	SYNONYMOUS_CODING CG5514
3R	7929467	3R_7929467_SNP [dm3] 3R_12103745_SNP [dm6]	C	A	4.421e^-4	0.94	INTRON dpr17
2L	16457767	2L_16457767_SNP [dm3] 2L_16457767_SNP [dm6]	G	T	4.433e^-4	0.94	INTERGENIC	regulatory region REDfly_CRMs
2L	21008561	2L_21008561_SNP [dm3] 2L_21008561_SNP [dm6]	T	A	4.435e^-4	0.94	INTRON CG42238
2R	17913311	2R_17913311_DEL [dm3] 2R_22025806_DEL [dm6]	AATGACCTGTACA...	A	4.436e^-4	0.94	INTRON CG34370
2L	16954113	2L_16954113_SNP [dm3] 2L_16954113_SNP [dm6]	A	T	4.436e^-4	0.94	INTERGENIC
3L	15391630	3L_15391630_SNP [dm3] 3L_15398530_SNP [dm6]	A	G	4.440e^-4	0.94	INTERGENIC
2L	1626131	2L_1626131_SNP [dm3] 2L_1626131_SNP [dm6]	G	A	4.443e^-4	0.94	UPSTREAM CR44603 INTERGENIC
X	4222485	X_4222485_SNP [dm3] X_4328452_SNP [dm6]	A	C	4.444e^-4	0.94	NON_SYNONYMOUS_CODING CG12693 INTRON norpA	TF binding site BDTNP1_TFBS_twi
3R	17919849	3R_17919849_SNP [dm3] 3R_22094127_SNP [dm6]	A	T	4.455e^-4	0.94	INTRON CG5778	TF binding site mE1_TFBS_run
2L	15205554	2L_15205554_SNP [dm3] 2L_15205554_SNP [dm6]	G	A	4.456e^-4	0.94	INTERGENIC
3L	18986662	3L_18986662_SNP [dm3] 3L_18993562_SNP [dm6]	T	A	4.457e^-4	0.94	UPSTREAM CG18135 INTRON CG18135	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2L	9687227	2L_9687227_SNP [dm3] 2L_9687227_SNP [dm6]	T	C	4.463e^-4	0.94	INTRON Pka-C1
3L	1032193	3L_1032193_SNP [dm3] 3L_1032193_SNP [dm6]	C	T	4.469e^-4	0.94	INTRON trio	TF binding site BDTNP1_TFBS_dl
X	12890841	X_12890841_SNP [dm3] X_12996808_SNP [dm6]	C	G	4.473e^-4	0.94	INTRON rad	TF binding site BDTNP1_TFBS_twi
3R	13571730	3R_13571730_SNP [dm3] 3R_17746008_SNP [dm6]	C	T	4.483e^-4	0.94	UTR_3_PRIME TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12496019	3L_12496019_SNP [dm3] 3L_12502919_SNP [dm6]	C	G	4.490e^-4	0.94	SYNONYMOUS_CODING CG10646 DOWNSTREAM CG10681	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	22092301	2L_22092301_SNP [dm3] 2L_22092301_SNP [dm6]	G	C	4.491e^-4	0.94	INTERGENIC	transposable element FlyBase
3L	2083833	3L_2083833_SNP [dm3] 3L_2083833_SNP [dm6]	T	C	4.492e^-4	0.94	NON_SYNONYMOUS_CODING sls INTRON sls
X	15812655	X_15812655_SNP [dm3] X_15918622_SNP [dm6]	G	A	4.494e^-4	0.94	SYNONYMOUS_CODING CG8909
3R	20986091	3R_20986091_SNP [dm3] 3R_25160369_SNP [dm6]	G	C	4.496e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	3958470	X_3958470_SNP [dm3] X_4064437_SNP [dm6]	G	T	4.500e^-4	0.94	INTERGENIC
2L	7926010	2L_7926010_SNP [dm3] 2L_7926010_SNP [dm6]	T	C	4.504e^-4	0.94	INTRON Snoo
3R	24176531	3R_24176531_INS [dm3] 3R_28350809_INS [dm6]	C	CC	4.506e^-4	0.94	INTERGENIC
2R	8909662	2R_8909662_DEL [dm3] 2R_13022157_DEL [dm6]	GCCTCATTTCCATTG...	G	4.512e^-4	0.94	INTERGENIC
2R	8909697	2R_8909697_SNP [dm3] 2R_13022192_SNP [dm6]	C	T	4.512e^-4	0.94	INTERGENIC
2L	17752934	2L_17752934_SNP [dm3] 2L_17752934_SNP [dm6]	G	A	4.517e^-4	0.94	UPSTREAM CadN INTRON CadN	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14710182	3L_14710182_SNP [dm3] 3L_14717082_SNP [dm6]	C	G	4.518e^-4	0.94	INTRON ome	regulatory region REDfly_CRMs
2L	1199617	2L_1199617_SNP [dm3] 2L_1199617_SNP [dm6]	A	G	4.519e^-4	0.94	UTR_3_PRIME CG43348 UPSTREAM CG43349 & 1 other
2L	935658	2L_935658_SNP [dm3] 2L_935658_SNP [dm6]	C	A	4.520e^-4	0.94	INTRON CG4341	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	17274270	3L_17274270_SNP [dm3] 3L_17281170_SNP [dm6]	G	C	4.524e^-4	0.94	INTERGENIC
3L	11380342	3L_11380342_SNP [dm3] 3L_11387242_SNP [dm6]	G	T	4.530e^-4	0.94	INTERGENIC
X	17279270	X_17279270_SNP [dm3] X_17385237_SNP [dm6]	A	T	4.532e^-4	0.94	INTERGENIC
2L	18115661	2L_18115661_SNP [dm3] 2L_18115661_SNP [dm6]	G	T	4.555e^-4	0.94	DOWNSTREAM CG15152 INTERGENIC
X	21503853	X_21503853_SNP [dm3] X_21632826_SNP [dm6]	T	C	4.555e^-4	0.94	INTERGENIC	transposable element FlyBase
2L	16939367	2L_16939367_SNP [dm3] 2L_16939367_SNP [dm6]	G	A	4.565e^-4	0.94	INTERGENIC
3L	22529118	3L_22529118_SNP [dm3] 3L_22536018_SNP [dm6]	G	C	4.567e^-4	0.94	INTERGENIC
3R	26169679	3R_26169679_SNP [dm3] 3R_30343957_SNP [dm6]	T	A	4.579e^-4	0.94	INTRON hdc	TF binding site BDTNP1_TFBS_dl
3L	5326275	3L_5326275_SNP [dm3] 3L_5333175_SNP [dm6]	G	T	4.579e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20614201	3R_20614201_SNP [dm3] 3R_24788479_SNP [dm6]	A	G	4.579e^-4	0.94	SYNONYMOUS_CODING CG13634 INTRON Ets96B	TF binding site mE1_TFBS_chinmo
3L	18149155	3L_18149155_SNP [dm3] 3L_18156055_SNP [dm6]	G	A	4.590e^-4	0.94	NON_SYNONYMOUS_CODING CG13699
2L	6240138	2L_6240138_SNP [dm3] 2L_6240138_SNP [dm6]	G	A	4.591e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	17752935	2L_17752935_SNP [dm3] 2L_17752935_SNP [dm6]	A	T	4.598e^-4	0.94	UPSTREAM CadN INTRON CadN	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	19739709	3R_19739709_SNP [dm3] 3R_23913987_SNP [dm6]	G	A	4.601e^-4	0.94	INTRON sba	TF binding site mE1_TFBS_Kr
2L	3323019	2L_3323019_SNP [dm3] 2L_3323019_SNP [dm6]	C	T	4.605e^-4	0.94	SYNONYMOUS_CODING CG8837	TF binding site mE1_TFBS_cad
3L	7644167	3L_7644167_SNP [dm3] 3L_7651067_SNP [dm6]	C	T	4.609e^-4	0.94	UPSTREAM PGRP-SD DOWNSTREAM CG7492 INTRON CG32373
3R	25727868	3R_25727868_SNP [dm3] 3R_29902146_SNP [dm6]	A	C	4.612e^-4	0.94	INTRON CG31038
3L	17873736	3L_17873736_SNP [dm3] 3L_17880636_SNP [dm6]	A	C	4.618e^-4	0.94	NON_SYNONYMOUS_CODING CG7408
2L	7636390	2L_7636390_SNP [dm3] 2L_7636390_SNP [dm6]	C	A	4.624e^-4	0.94	UPSTREAM CR44800 INTRON CR44799	TF binding site BDTNP1_TFBS_twi
2L	1715984	2L_1715984_SNP [dm3] 2L_1715984_SNP [dm6]	C	T	4.624e^-4	0.94	UPSTREAM frtz DOWNSTREAM Rim2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	1638575	3L_1638575_SNP [dm3] 3L_1638575_SNP [dm6]	T	C	4.631e^-4	0.94	SYNONYMOUS_CODING metl UPSTREAM nSyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_sens
X	15850233	X_15850233_SNP [dm3] X_15956200_SNP [dm6]	T	A	4.632e^-4	0.94	INTRON mmd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2R	12262005	2R_12262005_SNP [dm3] 2R_16374500_SNP [dm6]	A	G	4.635e^-4	0.94	INTERGENIC
2L	13430646	2L_13430646_SNP [dm3] 2L_13430646_SNP [dm6]	C	T	4.644e^-4	0.94	INTRON CG42784
2L	8267111	2L_8267111_SNP [dm3] 2L_8267111_SNP [dm6]	A	T	4.645e^-4	0.94	INTRON Btk29A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
X	10449056	X_10449056_SNP [dm3] X_10555023_SNP [dm6]	G	T	4.648e^-4	0.94	INTRON spri
3L	683357	3L_683357_SNP [dm3] 3L_683357_SNP [dm6]	C	T	4.649e^-4	0.94	SYNONYMOUS_CODING ebd1 UPSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
3R	21279848	3R_21279848_SNP [dm3] 3R_25454126_SNP [dm6]	C	T	4.649e^-4	0.94	INTRON Fur1
3L	12817198	3L_12817198_SNP [dm3] 3L_12824098_SNP [dm6]	C	G	4.663e^-4	0.94	SYNONYMOUS_CODING CG42588 DOWNSTREAM CG10960
2R	17395566	2R_17395566_SNP [dm3] 2R_21508061_SNP [dm6]	T	C	4.668e^-4	0.94	INTRON MESK2
X	21043501	X_21043501_SNP [dm3] X_21172474_SNP [dm6]	C	A	4.679e^-4	0.94	INTERGENIC	transposable element FlyBase
X	3445359	X_3445359_SNP [dm3] X_3551326_SNP [dm6]	T	G	4.688e^-4	0.94	INTRON CG32791
2L	2685239	2L_2685239_SNP [dm3] 2L_2685239_SNP [dm6]	A	C	4.724e^-4	0.94	INTRON CG31690
3L	21394718	3L_21394718_SNP [dm3] 3L_21401618_SNP [dm6]	C	G	4.728e^-4	0.94	INTRON rgn
3L	5326274	3L_5326274_SNP [dm3] 3L_5333174_SNP [dm6]	T	G	4.733e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21584866	3R_21584866_SNP [dm3] 3R_25759144_SNP [dm6]	T	A	4.747e^-4	0.94	SYNONYMOUS_CODING LpR1 INTRON LpR1
X	14757080	X_14757080_SNP [dm3] X_14863047_SNP [dm6]	G	C	4.748e^-4	0.94	UTR_3_PRIME CG9518 INTRON Flo2
2R	15289855	2R_15289855_SNP [dm3] 2R_19402350_SNP [dm6]	G	A	4.751e^-4	0.94	NON_SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	18149162	3L_18149162_SNP [dm3] 3L_18156062_SNP [dm6]	C	T	4.751e^-4	0.94	NON_SYNONYMOUS_CODING CG13699
3L	5326289	3L_5326289_MNP [dm3] 3L_5333189_MNP [dm6]	AAC	TCA	4.755e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	9123993	X_9123993_DEL [dm3] X_9229960_DEL [dm6]	AATCGTAAACACAACCAGCA...	A	4.771e^-4	0.94	INTRON CG12121
2L	6954297	2L_6954297_SNP [dm3] 2L_6954297_SNP [dm6]	C	A	4.772e^-4	0.94	SYNONYMOUS_CODING SA DOWNSTREAM CG13775
3L	16506148	3L_16506148_SNP [dm3] 3L_16513048_SNP [dm6]	A	G	4.775e^-4	0.94	SYNONYMOUS_CODING CG43373
3R	19549737	3R_19549737_SNP [dm3] 3R_23724015_SNP [dm6]	T	C	4.782e^-4	0.94	INTRON CG10365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17397098	2R_17397098_SNP [dm3] 2R_21509593_SNP [dm6]	G	T	4.782e^-4	0.94	INTRON MESK2
2L	9012963	2L_9012963_SNP [dm3] 2L_9012963_SNP [dm6]	T	C	4.786e^-4	0.94	UTR_3_PRIME CG13102 & 1 other DOWNSTREAM CG13102	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	4701075	3R_4701075_SNP [dm3] 3R_8875353_SNP [dm6]	A	G	4.791e^-4	0.94	INTRON pyd
2R	2711310	2R_2711310_SNP [dm3] 2R_6823805_SNP [dm6]	A	G	4.793e^-4	0.94	INTERGENIC
2L	22136840	2L_22136840_SNP [dm3] 2L_22136840_SNP [dm6]	A	G	4.804e^-4	0.94	INTRON CG42748
3L	4351385	3L_4351385_SNP [dm3] 3L_4351385_SNP [dm6]	G	A	4.806e^-4	0.94	INTRON Cip4
2R	12262083	2R_12262083_SNP [dm3] 2R_16374578_SNP [dm6]	G	T	4.807e^-4	0.94	INTERGENIC
2L	1032744	2L_1032744_SNP [dm3] 2L_1032744_SNP [dm6]	T	A	4.812e^-4	0.94	INTRON IA-2
3L	683297	3L_683297_SNP [dm3] 3L_683297_SNP [dm6]	G	C	4.814e^-4	0.94	NON_SYNONYMOUS_CODING ebd1 UPSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
2R	5287317	2R_5287317_SNP [dm3] 2R_9399812_SNP [dm6]	G	C	4.815e^-4	0.94	UTR_3_PRIME CG33774 & 1 other DOWNSTREAM wun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	165141	2L_165141_SNP [dm3] 2L_165141_SNP [dm6]	C	T	4.817e^-4	0.94	INTRON spen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24973542	3R_24973542_SNP [dm3] 3R_29147820_SNP [dm6]	C	T	4.820e^-4	0.94	SYNONYMOUS_CODING CG11882 UPSTREAM CG14511 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	14755244	3R_14755244_SNP [dm3] 3R_18929522_SNP [dm6]	T	C	4.826e^-4	0.94	START_GAINED CG42613 UTR_5_PRIME CG42613 UPSTREAM Mpc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2226141	3L_2226141_SNP [dm3] 3L_2226141_SNP [dm6]	A	G	4.829e^-4	0.94	INTERGENIC
2L	3322247	2L_3322247_SNP [dm3] 2L_3322247_SNP [dm6]	A	G	4.831e^-4	0.94	INTRON CG8837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6024816	2L_6024816_SNP [dm3] 2L_6024816_SNP [dm6]	A	C	4.834e^-4	0.94	UPSTREAM CG9107 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
X	9119203	X_9119203_SNP [dm3] X_9225170_SNP [dm6]	C	T	4.838e^-4	0.94	UPSTREAM CG15370 INTERGENIC
3R	26722415	3R_26722415_SNP [dm3] 3R_30896693_SNP [dm6]	A	G	4.850e^-4	0.94	INTRON Cyp4c3
2R	15667558	2R_15667558_SNP [dm3] 2R_19780053_SNP [dm6]	C	A	4.853e^-4	0.94	INTERGENIC
2R	7497412	2R_7497412_SNP [dm3] 2R_11609907_SNP [dm6]	A	G	4.867e^-4	0.94	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4002189	3L_4002189_SNP [dm3] 3L_4002189_SNP [dm6]	G	A	4.868e^-4	0.94	INTERGENIC
3R	12616309	3R_12616309_SNP [dm3] 3R_16790587_SNP [dm6]	G	A	4.868e^-4	0.94	DOWNSTREAM Glut3 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9122776	2R_9122776_SNP [dm3] 2R_13235271_SNP [dm6]	T	A	4.871e^-4	0.94	UTR_5_PRIME CG4670 UPSTREAM CG4676 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3731836	X_3731836_SNP [dm3] X_3837803_SNP [dm6]	G	A	4.879e^-4	0.94	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	18986621	3L_18986621_SNP [dm3] 3L_18993521_SNP [dm6]	A	G	4.882e^-4	0.94	UPSTREAM CG18135 INTRON CG18135	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2L	3300232	2L_3300232_SNP [dm3] 2L_3300232_SNP [dm6]	T	A	4.883e^-4	0.94	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14030443	3R_14030443_SNP [dm3] 3R_18204721_SNP [dm6]	C	T	4.889e^-4	0.94	INTRON CG7985
2L	17665721	2L_17665721_SNP [dm3] 2L_17665721_SNP [dm6]	G	A	4.890e^-4	0.94	INTRON CadN
2L	13529806	2L_13529806_SNP [dm3] 2L_13529806_SNP [dm6]	A	C	4.917e^-4	0.94	UTR_3_PRIME CG33641 UPSTREAM CG33642 INTRON B4
3R	4040896	3R_4040896_SNP [dm3] 3R_8215174_SNP [dm6]	T	C	4.918e^-4	0.94	INTERGENIC
3R	21572311	3R_21572311_SNP [dm3] 3R_25746589_SNP [dm6]	A	C	4.924e^-4	0.94	INTRON LpR1	TF binding site mE1_TFBS_cad
X	17303179	X_17303179_SNP [dm3] X_17409146_SNP [dm6]	G	A	4.931e^-4	0.94	INTERGENIC
2L	17696866	2L_17696866_INS [dm3] 2L_17696866_INS [dm6]	T	TAT	4.945e^-4	0.94	INTRON CadN
X	21045189	X_21045189_SNP [dm3] X_21174162_SNP [dm6]	C	T	4.948e^-4	0.94	INTERGENIC	transposable element FlyBase
3L	8807453	3L_8807453_SNP [dm3] 3L_8814353_SNP [dm6]	T	G	4.953e^-4	0.94	INTERGENIC
2R	7342279	2R_7342279_SNP [dm3] 2R_11454774_SNP [dm6]	G	A	4.954e^-4	0.94	INTRON E_Pc_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14089477	3R_14089477_SNP [dm3] 3R_18263755_SNP [dm6]	C	T	4.954e^-4	0.94	INTERGENIC
3R	14089483	3R_14089483_SNP [dm3] 3R_18263761_SNP [dm6]	C	T	4.954e^-4	0.94	INTERGENIC
2R	14982949	2R_14982949_SNP [dm3] 2R_19095444_SNP [dm6]	G	A	4.968e^-4	0.94	INTRON 5-HT1A & 1 other
3L	22416708	3L_22416708_SNP [dm3] 3L_22423608_SNP [dm6]	G	A	4.989e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	357324	2L_357324_SNP [dm3] 2L_357324_SNP [dm6]	C	T	4.992e^-4	0.94	UPSTREAM CR45366 DOWNSTREAM CR45367 INTRON Ent1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23514699	3R_23514699_SNP [dm3] 3R_27688977_SNP [dm6]	G	C	4.992e^-4	0.94	UPSTREAM CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo
2R	6285151	2R_6285151_SNP [dm3] 2R_10397646_SNP [dm6]	G	A	4.993e^-4	0.94	INTRON CG42732
2R	817419	2R_817419_SNP [dm3] 2R_4929914_SNP [dm6]	A	G	4.994e^-4	0.94	INTRON Ir41a
2L	13221088	2L_13221088_SNP [dm3] 2L_13221088_SNP [dm6]	C	T	5.003e^-4	0.94	SYNONYMOUS_CODING CG5705 DOWNSTREAM Ski6	TF binding site mE1_TFBS_sens
X	13011867	X_13011867_SNP [dm3] X_13117834_SNP [dm6]	T	A	5.018e^-4	0.94	INTRON CG42237
X	4320410	X_4320410_SNP [dm3] X_4426377_SNP [dm6]	A	T	5.023e^-4	0.94	UPSTREAM bi INTRON CR32773 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
3L	23852385	3L_23852385_SNP [dm3] 3L_23859285_SNP [dm6]	G	A	5.026e^-4	0.94	INTRON CG40470
2R	3493904	2R_3493904_SNP [dm3] 2R_7606399_SNP [dm6]	A	G	5.029e^-4	0.94	INTRON CG1358	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17583321	2R_17583321_SNP [dm3] 2R_21695816_SNP [dm6]	G	A	5.029e^-4	0.94	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad
3L	3800755	3L_3800755_SNP [dm3] 3L_3800755_SNP [dm6]	T	C	5.031e^-4	0.94	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site mE1_TFBS_cad
3R	15132422	3R_15132422_SNP [dm3] 3R_19306700_SNP [dm6]	T	A	5.033e^-4	0.94	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	16943629	3R_16943629_SNP [dm3] 3R_21117907_SNP [dm6]	A	G	5.043e^-4	0.94	UTR_3_PRIME Bdbt DOWNSTREAM ppan	TF binding site mE1_TFBS_cad
3R	19684865	3R_19684865_DEL [dm3] 3R_23859143_DEL [dm6]	AC	A	5.045e^-4	0.94	DOWNSTREAM snRNA:U1:95Ca INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	22050295	2L_22050295_SNP [dm3] 2L_22050295_SNP [dm6]	C	G	5.057e^-4	0.94	INTERGENIC
3R	15196696	3R_15196696_SNP [dm3] 3R_19370974_SNP [dm6]	T	C	5.059e^-4	0.94	INTRON Ino80
3R	26034523	3R_26034523_SNP [dm3] 3R_30208801_SNP [dm6]	A	C	5.066e^-4	0.94	UTR_5_PRIME RpS7 UPSTREAM snoRNA:Psi18S-1377a & 2 others INTRON RpS7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	23542663	3R_23542663_SNP [dm3] 3R_27716941_SNP [dm6]	T	G	5.071e^-4	0.94	INTERGENIC
X	6078339	X_6078339_SNP [dm3] X_6184306_SNP [dm6]	C	T	5.071e^-4	0.94	INTRON Ca-alpha1T
X	7490574	X_7490574_SNP [dm3] X_7596541_SNP [dm6]	T	A	5.073e^-4	0.94	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	777795	2L_777795_SNP [dm3] 2L_777795_SNP [dm6]	A	G	5.085e^-4	0.94	DOWNSTREAM CG13946 INTERGENIC	TF binding site mE1_TFBS_inv
X	20721078	X_20721078_SNP [dm3] X_20850051_SNP [dm6]	C	G	5.098e^-4	0.94	INTRON shakB
X	12675868	X_12675868_SNP [dm3] X_12781835_SNP [dm6]	G	A	5.106e^-4	0.94	INTRON CG32647
2L	15220989	2L_15220989_SNP [dm3] 2L_15220989_SNP [dm6]	A	G	5.107e^-4	0.94	INTERGENIC
X	12509390	X_12509390_SNP [dm3] X_12615357_SNP [dm6]	G	C	5.108e^-4	0.94	UTR_3_PRIME CG2543 UPSTREAM CG11085 INTRON CR45621	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	19524452	3L_19524452_SNP [dm3] 3L_19531352_SNP [dm6]	T	C	5.134e^-4	0.94	INTERGENIC
3R	14198184	3R_14198184_SNP [dm3] 3R_18372462_SNP [dm6]	T	G	5.142e^-4	0.94	UPSTREAM CG14310 INTRON gl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7085038	2L_7085038_SNP [dm3] 2L_7085038_SNP [dm6]	G	C	5.167e^-4	0.94	UPSTREAM Pvf2 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	6367541	3R_6367541_SNP [dm3] 3R_10541819_SNP [dm6]	T	C	5.168e^-4	0.94	INTRON hth	TF binding site BDTNP1_TFBS_dl
3L	3140248	3L_3140248_SNP [dm3] 3L_3140248_SNP [dm6]	C	T	5.168e^-4	0.94	UPSTREAM CG11537 INTRON CG11537
2R	14013560	2R_14013560_SNP [dm3] 2R_18126055_SNP [dm6]	C	A	5.170e^-4	0.94	UPSTREAM Spn55B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	21852952	3R_21852952_SNP [dm3] 3R_26027230_SNP [dm6]	C	G	5.174e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7651332	3L_7651332_SNP [dm3] 3L_7658232_SNP [dm6]	C	T	5.179e^-4	0.94	SYNONYMOUS_CODING Ank2 DOWNSTREAM CG44195 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad
3R	15058172	3R_15058172_SNP [dm3] 3R_19232450_SNP [dm6]	A	G	5.188e^-4	0.94	SYNONYMOUS_CODING unc79
2L	1260875	2L_1260875_SNP [dm3] 2L_1260875_SNP [dm6]	A	G	5.191e^-4	0.94	INTRON robo3
3R	10412466	3R_10412466_SNP [dm3] 3R_14586744_SNP [dm6]	T	G	5.196e^-4	0.94	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	22156748	3R_22156748_SNP [dm3] 3R_26331026_SNP [dm6]	G	A	5.205e^-4	0.94	INTRON CG33970
2L	6971118	2L_6971118_SNP [dm3] 2L_6971118_SNP [dm6]	C	T	5.205e^-4	0.94	SYNONYMOUS_CODING snRNP-U1-70K	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1698240	3L_1698240_SNP [dm3] 3L_1698240_SNP [dm6]	G	C	5.205e^-4	0.94	INTRON CG7991
2R	16023841	2R_16023841_SNP [dm3] 2R_20136336_SNP [dm6]	G	A	5.210e^-4	0.94	DOWNSTREAM CR44634 INTERGENIC
2L	22054914	2L_22054914_SNP [dm3] 2L_22054914_SNP [dm6]	T	C	5.210e^-4	0.94	UPSTREAM CG34173 INTERGENIC
3L	17744806	3L_17744806_SNP [dm3] 3L_17751706_SNP [dm6]	C	T	5.213e^-4	0.94	DOWNSTREAM Adgf-A INTERGENIC
X	4475320	X_4475320_SNP [dm3] X_4581287_SNP [dm6]	C	T	5.214e^-4	0.94	INTRON CR32773
3L	7278200	3L_7278200_SNP [dm3] 3L_7285100_SNP [dm6]	G	T	5.219e^-4	0.94	UTR_5_PRIME unc-13-4A	TF binding site mE1_TFBS_cad
3R	17750715	3R_17750715_SNP [dm3] 3R_21924993_SNP [dm6]	A	C	5.220e^-4	0.94	INTERGENIC
2L	19769969	2L_19769969_SNP [dm3] 2L_19769969_SNP [dm6]	C	T	5.224e^-4	0.94	UPSTREAM bsh INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5447979	2L_5447979_SNP [dm3] 2L_5447979_SNP [dm6]	G	T	5.228e^-4	0.94	INTERGENIC
2R	20217827	2R_20217827_SNP [dm3] 2R_24330304_SNP [dm6]	C	A	5.239e^-4	0.94	DOWNSTREAM CR44810 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	17696868	2L_17696868_SNP [dm3] 2L_17696868_SNP [dm6]	G	A	5.240e^-4	0.94	INTRON CadN
3L	5326281	3L_5326281_SNP [dm3] 3L_5333181_SNP [dm6]	A	T	5.245e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12021676	X_12021676_SNP [dm3] X_12127643_SNP [dm6]	C	T	5.250e^-4	0.94	UPSTREAM Ten-a INTRON Ten-a
3R	12909192	3R_12909192_SNP [dm3] 3R_17083470_SNP [dm6]	A	T	5.255e^-4	0.94	SYNONYMOUS_CODING kuk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6435291	2R_6435291_SNP [dm3] 2R_10547786_SNP [dm6]	A	C	5.261e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	935657	2L_935657_SNP [dm3] 2L_935657_SNP [dm6]	G	A	5.265e^-4	0.94	INTRON CG4341	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	855753	3L_855753_SNP [dm3] 3L_855753_SNP [dm6]	A	T	5.273e^-4	0.94	INTRON dpr20
X	16581131	X_16581131_SNP [dm3] X_16687098_SNP [dm6]	G	A	5.274e^-4	0.94	INTRON Sep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	21507377	X_21507377_SNP [dm3] X_21636350_SNP [dm6]	G	A	5.277e^-4	0.94	INTERGENIC	transposable element FlyBase
2L	17599627	2L_17599627_DEL [dm3] 2L_17599627_DEL [dm6]	TCAAAGT	T	5.279e^-4	0.94	INTRON Sytalpha	TF binding site mE1_TFBS_HSA
2L	12904148	2L_12904148_SNP [dm3] 2L_12904148_SNP [dm6]	T	A	5.280e^-4	0.94	INTERGENIC
X	10448749	X_10448749_SNP [dm3] X_10554716_SNP [dm6]	A	G	5.284e^-4	0.94	INTRON spri
2L	13955885	2L_13955885_SNP [dm3] 2L_13955885_SNP [dm6]	T	A	5.288e^-4	0.94	UTR_3_PRIME Ance-3 DOWNSTREAM Ance-3
2L	14769365	2L_14769365_SNP [dm3] 2L_14769365_SNP [dm6]	T	A	5.288e^-4	0.94	INTERGENIC
3R	17919845	3R_17919845_SNP [dm3] 3R_22094123_SNP [dm6]	A	T	5.300e^-4	0.94	INTRON CG5778	TF binding site mE1_TFBS_run
2L	3322502	2L_3322502_SNP [dm3] 2L_3322502_SNP [dm6]	G	A	5.303e^-4	0.94	SYNONYMOUS_CODING CG8837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3344832	3R_3344832_SNP [dm3] 3R_7519110_SNP [dm6]	C	T	5.305e^-4	0.94	SYNONYMOUS_CODING Ubc84D DOWNSTREAM alpha-Est7
X	10348196	X_10348196_SNP [dm3] X_10454163_SNP [dm6]	C	T	5.306e^-4	0.94	INTRON CG32683
3R	21572325	3R_21572325_SNP [dm3] 3R_25746603_SNP [dm6]	T	C	5.310e^-4	0.94	INTRON LpR1	TF binding site mE1_TFBS_cad
3R	21418211	3R_21418211_SNP [dm3] 3R_25592489_SNP [dm6]	G	A	5.321e^-4	0.94	DOWNSTREAM ymp INTRON msi & 1 other
2L	18903859	2L_18903859_SNP [dm3] 2L_18903859_SNP [dm6]	A	T	5.322e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	16292838	2L_16292838_SNP [dm3] 2L_16292838_SNP [dm6]	T	A	5.325e^-4	0.94	DOWNSTREAM CG17329 & 1 other INTRON CG13258	TF binding site mE1_TFBS_inv
3R	18522922	3R_18522922_SNP [dm3] 3R_22697200_SNP [dm6]	A	G	5.332e^-4	0.94	SYNONYMOUS_CODING cd	TF binding site mE1_TFBS_cad
X	20727179	X_20727179_SNP [dm3] X_20856152_SNP [dm6]	G	A	5.335e^-4	0.94	INTRON shakB
3R	26742581	3R_26742581_SNP [dm3] 3R_30916859_SNP [dm6]	A	C	5.335e^-4	0.94	INTRON Ptx1	TF binding site BDTNP1_TFBS_da
X	12676199	X_12676199_SNP [dm3] X_12782166_SNP [dm6]	T	A	5.336e^-4	0.94	INTRON CG32647
2R	19132317	2R_19132317_SNP [dm3] 2R_23244794_SNP [dm6]	T	C	5.338e^-4	0.94	INTRON yip3
3R	16943703	3R_16943703_SNP [dm3] 3R_21117981_SNP [dm6]	A	G	5.338e^-4	0.94	SYNONYMOUS_CODING Bdbt DOWNSTREAM ppan	TF binding site mE1_TFBS_cad
X	12509392	X_12509392_SNP [dm3] X_12615359_SNP [dm6]	A	G	5.342e^-4	0.94	UTR_3_PRIME CG2543 UPSTREAM CG11085 INTRON CR45621	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	17583166	2R_17583166_SNP [dm3] 2R_21695661_SNP [dm6]	G	T	5.342e^-4	0.94	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad
2R	5659416	2R_5659416_SNP [dm3] 2R_9771911_SNP [dm6]	C	G	5.343e^-4	0.94	SYNONYMOUS_CODING CG1688	TF binding site mE1_TFBS_cad

By genomic position
Variant impact
Gene name

totalLength phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results