DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.263e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.08081
In_3R_P	0.05026

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	5.5244	0.0632
In_3R_Mo	5.1387	0.0766

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2265 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	13646823	3R_13646823_SNP [dm3] 3R_17821101_SNP [dm6]	T	C	3.273e^-7	0.614	INTRON tinc	TF binding site mE1_TFBS_HSA
X	3897800	X_3897800_SNP [dm3] X_4003767_SNP [dm6]	G	A	1.696e^-6	0.744	INTERGENIC
2L	1740379	2L_1740379_INS [dm3] 2L_1740379_INS [dm6]	T	TTAAAAGAACC...	1.938e^-6	0.744	INTRON CG17646
X	16115084	X_16115084_SNP [dm3] X_16221051_SNP [dm6]	C	A	1.952e^-6	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2R	13257127	2R_13257127_SNP [dm3] 2R_17369622_SNP [dm6]	G	A	2.201e^-6	0.744	INTRON mbl
2R	16579905	2R_16579905_SNP [dm3] 2R_20692400_SNP [dm6]	C	T	2.648e^-6	0.744	UPSTREAM CG13438 EXON CR44659
3L	17127886	3L_17127886_SNP [dm3] 3L_17134786_SNP [dm6]	G	A	3.113e^-6	0.744	INTRON Rbp6
2L	15752277	2L_15752277_SNP [dm3] 2L_15752277_SNP [dm6]	C	A	3.558e^-6	0.744	UTR_5_PRIME l_2_35Df UPSTREAM snRNA:U5:35D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1740367	2L_1740367_SNP [dm3] 2L_1740367_SNP [dm6]	A	G	3.924e^-6	0.744	INTRON CG17646
3L	16225373	3L_16225373_SNP [dm3] 3L_16232273_SNP [dm6]	A	C	4.320e^-6	0.744	SYNONYMOUS_CODING MED10 UPSTREAM PDCD-5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	19505428	2R_19505428_SNP [dm3] 2R_23617905_SNP [dm6]	T	G	4.515e^-6	0.744	INTERGENIC	TF binding site mE1_TFBS_D
2L	20523675	2L_20523675_SNP [dm3] 2L_20523675_SNP [dm6]	T	G	4.758e^-6	0.744	INTERGENIC
3L	6051581	3L_6051581_SNP [dm3] 3L_6058481_SNP [dm6]	A	C	6.112e^-6	0.753	UPSTREAM CR45441 INTERGENIC
2L	10155111	2L_10155111_SNP [dm3] 2L_10155111_SNP [dm6]	A	G	6.395e^-6	0.753	SYNONYMOUS_CODING CG4839 INTRON CG44153
3L	6051448	3L_6051448_SNP [dm3] 3L_6058348_SNP [dm6]	G	A	6.529e^-6	0.753	UPSTREAM CR45441 INTERGENIC
2L	553757	2L_553757_SNP [dm3] 2L_553757_SNP [dm6]	C	G	7.500e^-6	0.753	UTR_3_PRIME rempA UPSTREAM Ets21C
2L	1740380	2L_1740380_DEL [dm3] 2L_1740380_DEL [dm6]	GCCC	TAA	7.761e^-6	0.753	INTRON CG17646
X	19974981	X_19974981_SNP [dm3] X_20080948_SNP [dm6]	G	A	8.079e^-6	0.753	INTERGENIC
3R	18213375	3R_18213375_SNP [dm3] 3R_22387653_SNP [dm6]	C	T	8.225e^-6	0.753	INTRON CG5379
3L	8062879	3L_8062879_SNP [dm3] 3L_8069779_SNP [dm6]	C	T	8.225e^-6	0.753	NON_SYNONYMOUS_CODING CG42591 UPSTREAM CG42590 INTRON Ect4	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	13712572	2L_13712572_SNP [dm3] 2L_13712572_SNP [dm6]	A	C	8.752e^-6	0.753	INTRON CG31814
2R	1740950	2R_1740950_SNP [dm3] 2R_5853445_SNP [dm6]	A	C	8.928e^-6	0.753	INTRON dpr12
3L	9900300	3L_9900300_SNP [dm3] 3L_9907200_SNP [dm6]	A	T	9.335e^-6	0.753	UPSTREAM CG34356 INTERGENIC
X	2278520	X_2278520_SNP [dm3] X_2384487_SNP [dm6]	G	A	9.877e^-6	0.753	SYNONYMOUS_CODING PsGEF	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	17575549	2R_17575549_SNP [dm3] 2R_21688044_SNP [dm6]	A	C	1.020e^-5	0.753	UTR_3_PRIME CG30285 UPSTREAM Tbp & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
X	21656882	X_21656882_SNP [dm3] X_21785855_SNP [dm6]	A	T	1.084e^-5	0.753	INTERGENIC
3L	11091339	3L_11091339_SNP [dm3] 3L_11098239_SNP [dm6]	A	T	1.200e^-5	0.753	UPSTREAM APP-BP1 & 1 other EXON pncr011:3L	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13256976	2R_13256976_SNP [dm3] 2R_17369471_SNP [dm6]	C	T	1.216e^-5	0.753	INTRON mbl
3L	6051559	3L_6051559_SNP [dm3] 3L_6058459_SNP [dm6]	C	T	1.243e^-5	0.753	UPSTREAM CR45441 INTERGENIC
X	21660844	X_21660844_SNP [dm3] X_21789817_SNP [dm6]	G	A	1.260e^-5	0.753	INTERGENIC
2L	18251468	2L_18251468_SNP [dm3] 2L_18251468_SNP [dm6]	A	G	1.345e^-5	0.753	NON_SYNONYMOUS_CODING CG43406 INTRON CG42750
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	1.380e^-5	0.753	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	1872966	3L_1872966_SNP [dm3] 3L_1872966_SNP [dm6]	T	C	1.414e^-5	0.753	SYNONYMOUS_CODING dre4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19918588	X_19918588_SNP [dm3] X_20024555_SNP [dm6]	G	T	1.419e^-5	0.753	UPSTREAM tRNA:CR32826 INTRON Dop2R	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2535174	X_2535174_SNP [dm3] X_2641141_SNP [dm6]	T	C	1.463e^-5	0.753	UTR_5_PRIME sgg UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl
2L	13986250	2L_13986250_SNP [dm3] 2L_13986250_SNP [dm6]	C	A	1.498e^-5	0.753	INTRON rk
2L	553756	2L_553756_SNP [dm3] 2L_553756_SNP [dm6]	A	T	1.528e^-5	0.753	UTR_3_PRIME rempA UPSTREAM Ets21C
2R	17575553	2R_17575553_SNP [dm3] 2R_21688048_SNP [dm6]	G	A	1.535e^-5	0.753	UTR_3_PRIME CG30285 UPSTREAM Tbp & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	17575554	2R_17575554_SNP [dm3] 2R_21688049_SNP [dm6]	A	G	1.640e^-5	0.753	UTR_3_PRIME CG30285 UPSTREAM Tbp & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	13256758	2R_13256758_SNP [dm3] 2R_17369253_SNP [dm6]	C	A	1.755e^-5	0.753	INTRON mbl
X	8720297	X_8720297_SNP [dm3] X_8826264_SNP [dm6]	G	A	1.821e^-5	0.753	INTERGENIC
2L	3709240	2L_3709240_SNP [dm3] 2L_3709240_SNP [dm6]	C	A	1.872e^-5	0.753	INTRON cutlet	TF binding site mE1_TFBS_cad
2L	13986264	2L_13986264_SNP [dm3] 2L_13986264_SNP [dm6]	T	C	1.883e^-5	0.753	SPLICE_SITE_REGION rk INTRON rk
2L	1740602	2L_1740602_SNP [dm3] 2L_1740602_SNP [dm6]	G	A	1.918e^-5	0.753	INTRON CG17646
2L	4280136	2L_4280136_SNP [dm3] 2L_4280136_SNP [dm6]	T	C	1.920e^-5	0.753	UPSTREAM Art2 INTRON Art2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	3945919	3R_3945919_SNP [dm3] 3R_8120197_SNP [dm6]	A	C	1.920e^-5	0.753	INTRON puc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6051392	3L_6051392_SNP [dm3] 3L_6058292_SNP [dm6]	T	C	2.098e^-5	0.753	UPSTREAM CR45441 INTERGENIC
3L	6052786	3L_6052786_SNP [dm3] 3L_6059686_SNP [dm6]	A	G	2.132e^-5	0.753	UTR_5_PRIME CG6592 DOWNSTREAM CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_run
2R	17575558	2R_17575558_SNP [dm3] 2R_21688053_SNP [dm6]	A	G	2.143e^-5	0.753	UTR_3_PRIME CG30285 UPSTREAM Tbp & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
X	4065038	X_4065038_SNP [dm3] X_4171005_SNP [dm6]	A	C	2.159e^-5	0.753	INTRON Fas2	TF binding site mE1_TFBS_inv
2L	3872549	2L_3872549_SNP [dm3] 2L_3872549_SNP [dm6]	C	T	2.315e^-5	0.753	UPSTREAM CG31957 DOWNSTREAM capu INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8177516	2L_8177516_SNP [dm3] 2L_8177516_SNP [dm6]	T	C	2.316e^-5	0.753	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15752503	2L_15752503_SNP [dm3] 2L_15752503_SNP [dm6]	A	G	2.355e^-5	0.753	SYNONYMOUS_CODING l_2_35Df UPSTREAM snRNA:U5:35D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13511207	2R_13511207_SNP [dm3] 2R_17623702_SNP [dm6]	A	T	2.455e^-5	0.753	INTRON CG10936
X	19975002	X_19975002_SNP [dm3] X_20080969_SNP [dm6]	G	C	2.496e^-5	0.753	INTERGENIC
3R	18218623	3R_18218623_SNP [dm3] 3R_22392901_SNP [dm6]	C	G	2.499e^-5	0.753	SYNONYMOUS_CODING CG13857 DOWNSTREAM CG7059	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	11218042	X_11218042_SNP [dm3] X_11324009_SNP [dm6]	A	T	2.572e^-5	0.753	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	13257047	2R_13257047_SNP [dm3] 2R_17369542_SNP [dm6]	T	A	2.662e^-5	0.753	INTRON mbl
3L	6052787	3L_6052787_SNP [dm3] 3L_6059687_SNP [dm6]	T	A	2.677e^-5	0.753	UTR_5_PRIME CG6592 DOWNSTREAM CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_run
2L	6616375	2L_6616375_SNP [dm3] 2L_6616375_SNP [dm6]	T	C	2.736e^-5	0.753	SYNONYMOUS_CODING CG11050 DOWNSTREAM CG11320
3R	9952486	3R_9952486_SNP [dm3] 3R_14126764_SNP [dm6]	A	C	2.795e^-5	0.753	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2464141	X_2464141_INS [dm3] X_2570108_INS [dm6]	C	CC	2.805e^-5	0.753	INTRON Pdfr
2L	3742362	2L_3742362_SNP [dm3] 2L_3742362_SNP [dm6]	A	G	2.960e^-5	0.753	INTRON CG10019
X	16497845	X_16497845_SNP [dm3] X_16603812_SNP [dm6]	T	C	2.971e^-5	0.753	SYNONYMOUS_CODING Nup153	TF binding site mE1_TFBS_sens
3L	6051357	3L_6051357_SNP [dm3] 3L_6058257_SNP [dm6]	C	T	3.000e^-5	0.753	UPSTREAM CR45441 INTERGENIC
2L	3872545	2L_3872545_SNP [dm3] 2L_3872545_SNP [dm6]	T	A	3.058e^-5	0.753	UPSTREAM CG31957 DOWNSTREAM capu INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	4064985	X_4064985_SNP [dm3] X_4170952_SNP [dm6]	G	C	3.106e^-5	0.753	INTRON Fas2	TF binding site mE1_TFBS_inv
X	1833745	X_1833745_SNP [dm3] X_1939712_SNP [dm6]	C	G	3.237e^-5	0.753	SYNONYMOUS_CODING CG3857 UPSTREAM CG3587	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7630452	2L_7630452_SNP [dm3] 2L_7630452_SNP [dm6]	G	T	3.239e^-5	0.753	INTERGENIC
X	20919788	X_20919788_SNP [dm3] X_21048761_SNP [dm6]	A	G	3.244e^-5	0.753	SYNONYMOUS_CODING Cbs	TF binding site mE1_TFBS_chinmo
3R	7724857	3R_7724857_SNP [dm3] 3R_11899135_SNP [dm6]	T	C	3.249e^-5	0.753	SYNONYMOUS_CODING Cad87A DOWNSTREAM CG34307	TF binding site mE1_TFBS_sens
3L	5933868	3L_5933868_SNP [dm3] 3L_5940768_SNP [dm6]	A	G	3.351e^-5	0.753	INTRON CG33993
2R	14846323	2R_14846323_SNP [dm3] 2R_18958818_SNP [dm6]	C	A	3.358e^-5	0.753	UTR_3_PRIME sano
2L	5549540	2L_5549540_SNP [dm3] 2L_5549540_SNP [dm6]	C	T	3.412e^-5	0.753	UTR_3_PRIME Oscillin DOWNSTREAM CG14014 & 1 other
2L	4053572	2L_4053572_SNP [dm3] 2L_4053572_SNP [dm6]	T	A	3.434e^-5	0.753	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2878586	2L_2878586_SNP [dm3] 2L_2878586_SNP [dm6]	T	C	3.471e^-5	0.753	UTR_5_PRIME CG31950 UPSTREAM betaggt-II & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	2879228	2L_2879228_SNP [dm3] 2L_2879228_SNP [dm6]	G	A	3.553e^-5	0.753	UTR_5_PRIME betaggt-II UPSTREAM Prx6005 DOWNSTREAM CG31950	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	4093929	2L_4093929_SNP [dm3] 2L_4093929_SNP [dm6]	T	G	3.566e^-5	0.753	INTRON ed	TF binding site BDTNP1_TFBS_twi
3R	18524087	3R_18524087_INS [dm3] 3R_22698365_INS [dm6]	T	TG	3.650e^-5	0.753	UTR_5_PRIME Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	9952431	3R_9952431_SNP [dm3] 3R_14126709_SNP [dm6]	A	G	3.694e^-5	0.753	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8062864	3L_8062864_SNP [dm3] 3L_8069764_SNP [dm6]	T	G	3.716e^-5	0.753	SYNONYMOUS_CODING CG42591 UPSTREAM CG42590 INTRON Ect4	TF binding site mE1_TFBS_HSA
2L	9400454	2L_9400454_SNP [dm3] 2L_9400454_SNP [dm6]	G	A	3.772e^-5	0.753	INTRON Shawl
X	4434808	X_4434808_SNP [dm3] X_4540775_SNP [dm6]	C	T	3.801e^-5	0.753	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	18245802	2L_18245802_SNP [dm3] 2L_18245802_SNP [dm6]	A	C	3.880e^-5	0.753	INTRON CG42750
2R	6765025	2R_6765025_SNP [dm3] 2R_10877520_SNP [dm6]	G	A	3.906e^-5	0.753	SYNONYMOUS_CODING Taf5 DOWNSTREAM nclb	TF binding site mE1_TFBS_cad
2R	6765026	2R_6765026_SNP [dm3] 2R_10877521_SNP [dm6]	G	C	3.906e^-5	0.753	SYNONYMOUS_CODING Taf5 DOWNSTREAM nclb	TF binding site mE1_TFBS_cad
3R	16388786	3R_16388786_SNP [dm3] 3R_20563064_SNP [dm6]	C	G	3.944e^-5	0.753	SYNONYMOUS_CODING CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2464147	X_2464147_SNP [dm3] X_2570114_SNP [dm6]	T	C	3.969e^-5	0.753	INTRON Pdfr
3L	10336312	3L_10336312_DEL [dm3] 3L_10343212_DEL [dm6]	AA	A	3.991e^-5	0.753	INTERGENIC
2R	12386563	2R_12386563_SNP [dm3] 2R_16499058_SNP [dm6]	T	A	4.028e^-5	0.753	INTRON CG7813	TF binding site BDTNP1_TFBS_dl
3L	6051362	3L_6051362_SNP [dm3] 3L_6058262_SNP [dm6]	G	A	4.030e^-5	0.753	UPSTREAM CR45441 INTERGENIC
X	14152644	X_14152644_SNP [dm3] X_14258611_SNP [dm6]	T	C	4.222e^-5	0.753	DOWNSTREAM mud INTERGENIC
2L	15764727	2L_15764727_SNP [dm3] 2L_15764727_SNP [dm6]	T	A	4.288e^-5	0.753	INTRON CG3793	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9900286	3L_9900286_SNP [dm3] 3L_9907186_SNP [dm6]	C	T	4.330e^-5	0.753	UPSTREAM CG34356 INTERGENIC
3L	9222126	3L_9222126_SNP [dm3] 3L_9229026_SNP [dm6]	G	A	4.332e^-5	0.753	INTERGENIC
2R	13250555	2R_13250555_SNP [dm3] 2R_17363050_SNP [dm6]	T	C	4.358e^-5	0.753	SYNONYMOUS_CODING mbl INTRON mbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5233377	2R_5233377_SNP [dm3] 2R_9345872_SNP [dm6]	G	A	4.383e^-5	0.753	NON_SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
2L	4053570	2L_4053570_SNP [dm3] 2L_4053570_SNP [dm6]	G	A	4.393e^-5	0.753	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12724367	2L_12724367_INS [dm3] 2L_12724367_INS [dm6]	G	GG	4.404e^-5	0.753	INTRON MRP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9400458	2L_9400458_SNP [dm3] 2L_9400458_SNP [dm6]	A	G	4.420e^-5	0.753	INTRON Shawl
3L	9026764	3L_9026764_SNP [dm3] 3L_9033664_SNP [dm6]	A	G	4.456e^-5	0.753	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	15745097	2R_15745097_SNP [dm3] 2R_19857592_SNP [dm6]	A	G	4.491e^-5	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8267358	X_8267358_DEL [dm3] X_8373325_DEL [dm6]	AACAAAAAAA	A	4.519e^-5	0.753	INTERGENIC
2L	8614110	2L_8614110_SNP [dm3] 2L_8614110_SNP [dm6]	A	G	4.567e^-5	0.753	INTRON Sema-1a
3L	16826079	3L_16826079_SNP [dm3] 3L_16832979_SNP [dm6]	C	G	4.590e^-5	0.753	INTERGENIC
X	3626496	X_3626496_SNP [dm3] X_3732463_SNP [dm6]	A	C	4.597e^-5	0.753	INTRON tlk
3L	10011805	3L_10011805_SNP [dm3] 3L_10018705_SNP [dm6]	T	G	4.612e^-5	0.753	INTRON dpr6
2L	18260131	2L_18260131_SNP [dm3] 2L_18260131_SNP [dm6]	A	G	4.626e^-5	0.753	DOWNSTREAM CR44901 INTRON CG42750	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10799976	3R_10799976_SNP [dm3] 3R_14974254_SNP [dm6]	G	A	4.632e^-5	0.753	INTERGENIC
3L	9026833	3L_9026833_SNP [dm3] 3L_9033733_SNP [dm6]	A	T	4.717e^-5	0.753	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	16429381	3L_16429381_SNP [dm3] 3L_16436281_SNP [dm6]	C	T	4.732e^-5	0.753	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_inv
3L	5241174	3L_5241174_SNP [dm3] 3L_5248074_SNP [dm6]	G	A	4.760e^-5	0.753	INTRON shep
2L	3294129	2L_3294129_SNP [dm3] 2L_3294129_SNP [dm6]	C	G	4.832e^-5	0.753	UTR_5_PRIME CG9664 DOWNSTREAM CG9663 INTRON CG9664	TF binding site mE1_TFBS_HSA
2R	4691366	2R_4691366_SNP [dm3] 2R_8803861_SNP [dm6]	C	T	4.963e^-5	0.753	INTRON sns
3L	11091362	3L_11091362_SNP [dm3] 3L_11098262_SNP [dm6]	C	T	4.985e^-5	0.753	UPSTREAM APP-BP1 & 1 other EXON pncr011:3L	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	757103	3L_757103_SNP [dm3] 3L_757103_SNP [dm6]	A	G	5.085e^-5	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2056223	2R_2056223_DEL [dm3] 2R_6168718_DEL [dm6]	AA	A	5.086e^-5	0.753	UPSTREAM tRNA:R2:42Ab INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	18527094	3R_18527094_SNP [dm3] 3R_22701372_SNP [dm6]	T	C	5.089e^-5	0.753	SYNONYMOUS_CODING CCAP UPSTREAM CG6972
X	3626131	X_3626131_SNP [dm3] X_3732098_SNP [dm6]	C	T	5.101e^-5	0.753	INTRON tlk
X	20919682	X_20919682_SNP [dm3] X_21048655_SNP [dm6]	T	C	5.137e^-5	0.753	INTRON Cbs	TF binding site mE1_TFBS_chinmo
2L	7631661	2L_7631661_SNP [dm3] 2L_7631661_SNP [dm6]	T	C	5.142e^-5	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_hb
X	11217956	X_11217956_INS [dm3] X_11323923_INS [dm6]	T	TC	5.153e^-5	0.753	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	17356851	2R_17356851_SNP [dm3] 2R_21469346_SNP [dm6]	C	T	5.157e^-5	0.753	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2R	12089985	2R_12089985_SNP [dm3] 2R_16202480_SNP [dm6]	T	G	5.160e^-5	0.753	SYNONYMOUS_CODING shark DOWNSTREAM mrj	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	2854178	2L_2854178_SNP [dm3] 2L_2854178_SNP [dm6]	T	C	5.196e^-5	0.753	INTRON CG3104	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	12947291	2R_12947291_SNP [dm3] 2R_17059786_SNP [dm6]	G	C	5.206e^-5	0.753	UTR_3_PRIME CG8950 DOWNSTREAM CG8950 & 1 other
2L	9400437	2L_9400437_SNP [dm3] 2L_9400437_SNP [dm6]	A	T	5.229e^-5	0.753	INTRON Shawl
2R	13915162	2R_13915162_SNP [dm3] 2R_18027657_SNP [dm6]	C	G	5.267e^-5	0.753	INTERGENIC
2R	15737955	2R_15737955_SNP [dm3] 2R_19850450_SNP [dm6]	G	T	5.269e^-5	0.753	INTERGENIC
2R	13255546	2R_13255546_SNP [dm3] 2R_17368041_SNP [dm6]	C	A	5.295e^-5	0.753	INTRON mbl
3L	10011801	3L_10011801_SNP [dm3] 3L_10018701_SNP [dm6]	T	C	5.302e^-5	0.753	INTRON dpr6
2L	14011388	2L_14011388_SNP [dm3] 2L_14011388_SNP [dm6]	A	C	5.337e^-5	0.753	UPSTREAM tRNA:Q:34E INTERGENIC
2L	9856294	2L_9856294_SNP [dm3] 2L_9856294_SNP [dm6]	C	T	5.338e^-5	0.753	INTRON nAChRalpha6
2R	1047098	2R_1047098_SNP [dm3] 2R_5159593_SNP [dm6]	A	G	5.418e^-5	0.758	INTERGENIC	transposable element FlyBase
2R	17565919	2R_17565919_SNP [dm3] 2R_21678414_SNP [dm6]	G	A	5.524e^-5	0.767	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25092501	3R_25092501_SNP [dm3] 3R_29266779_SNP [dm6]	A	G	5.579e^-5	0.769	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12722120	2L_12722120_SNP [dm3] 2L_12722120_SNP [dm6]	A	T	5.790e^-5	0.788	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	1729092	2L_1729092_SNP [dm3] 2L_1729092_SNP [dm6]	C	T	5.926e^-5	0.788	SYNONYMOUS_CODING Rrp40 UPSTREAM Eno & 1 other INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12754824	3R_12754824_SNP [dm3] 3R_16929102_SNP [dm6]	T	C	5.932e^-5	0.788	UTR_3_PRIME Abd-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21126651	X_21126651_SNP [dm3] X_21255624_SNP [dm6]	C	G	5.950e^-5	0.788	INTRON CG32521
3R	9649620	3R_9649620_SNP [dm3] 3R_13823898_SNP [dm6]	G	T	5.957e^-5	0.788	INTERGENIC
2R	12947293	2R_12947293_SNP [dm3] 2R_17059788_SNP [dm6]	A	G	6.012e^-5	0.788	UTR_3_PRIME CG8950 DOWNSTREAM CG8950 & 1 other
X	21126656	X_21126656_SNP [dm3] X_21255629_SNP [dm6]	A	G	6.150e^-5	0.788	INTRON CG32521
2L	3703134	2L_3703134_SNP [dm3] 2L_3703134_SNP [dm6]	G	A	6.162e^-5	0.788	UPSTREAM CG2816 DOWNSTREAM CG43145 & 2 others INTERGENIC
2L	3709184	2L_3709184_SNP [dm3] 2L_3709184_SNP [dm6]	G	A	6.228e^-5	0.788	SYNONYMOUS_CODING cutlet	TF binding site mE1_TFBS_cad
2L	12921641	2L_12921641_SNP [dm3] 2L_12921641_SNP [dm6]	T	G	6.280e^-5	0.788	DOWNSTREAM ACXB INTRON ACXA
2R	13247338	2R_13247338_SNP [dm3] 2R_17359833_SNP [dm6]	G	T	6.394e^-5	0.788	UTR_3_PRIME mbl INTRON mbl	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4053577	2L_4053577_SNP [dm3] 2L_4053577_SNP [dm6]	G	C	6.404e^-5	0.788	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5549711	2L_5549711_SNP [dm3] 2L_5549711_SNP [dm6]	C	T	6.421e^-5	0.788	UTR_3_PRIME CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	6052264	3L_6052264_SNP [dm3] 3L_6059164_SNP [dm6]	C	A	6.437e^-5	0.788	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2R	13661288	2R_13661288_SNP [dm3] 2R_17773783_SNP [dm6]	A	G	6.453e^-5	0.788	DOWNSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	4916625	2L_4916625_DEL [dm3] 2L_4916625_DEL [dm6]	TG	T	6.515e^-5	0.788	INTRON hoe1
2R	13739421	2R_13739421_SNP [dm3] 2R_17851916_SNP [dm6]	T	A	6.541e^-5	0.788	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
2L	560886	2L_560886_SNP [dm3] 2L_560886_SNP [dm6]	C	G	6.580e^-5	0.788	NON_SYNONYMOUS_CODING CG11835 UPSTREAM rempA DOWNSTREAM CG2789	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16579976	2R_16579976_SNP [dm3] 2R_20692471_SNP [dm6]	C	T	6.799e^-5	0.788	UPSTREAM CG13438 EXON CR44659
X	11217982	X_11217982_SNP [dm3] X_11323949_SNP [dm6]	C	T	6.871e^-5	0.788	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
X	1845551	X_1845551_SNP [dm3] X_1951518_SNP [dm6]	C	T	6.877e^-5	0.788	INTRON Hr4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	11217958	X_11217958_SNP [dm3] X_11323925_SNP [dm6]	T	C	6.980e^-5	0.788	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	18256048	2L_18256048_SNP [dm3] 2L_18256048_SNP [dm6]	A	T	6.995e^-5	0.788	UPSTREAM CR43408 INTRON CG42750	TF binding site mE1_TFBS_HSA
X	2535038	X_2535038_SNP [dm3] X_2641005_SNP [dm6]	T	G	7.010e^-5	0.788	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13612784	2R_13612784_SNP [dm3] 2R_17725279_SNP [dm6]	T	A	7.030e^-5	0.788	UTR_3_PRIME Snx16 DOWNSTREAM CG10933	TF binding site mE1_TFBS_HSA
3L	9900046	3L_9900046_SNP [dm3] 3L_9906946_SNP [dm6]	A	C	7.165e^-5	0.788	INTERGENIC
2R	13406370	2R_13406370_SNP [dm3] 2R_17518865_SNP [dm6]	G	A	7.176e^-5	0.788	SYNONYMOUS_CODING CG4866 UPSTREAM APC10 DOWNSTREAM Patronin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	3786693	2R_3786693_SNP [dm3] 2R_7899188_SNP [dm6]	C	G	7.199e^-5	0.788	INTRON CG30377	TF binding site mE1_TFBS_cad
3L	13617812	3L_13617812_SNP [dm3] 3L_13624712_SNP [dm6]	G	A	7.209e^-5	0.788	INTRON bru-3
2R	17675726	2R_17675726_SNP [dm3] 2R_21788221_SNP [dm6]	C	T	7.293e^-5	0.788	INTERGENIC
2R	15007601	2R_15007601_SNP [dm3] 2R_19120096_SNP [dm6]	A	C	7.322e^-5	0.788	INTRON 5-HT1A
3R	9952539	3R_9952539_SNP [dm3] 3R_14126817_SNP [dm6]	A	C	7.350e^-5	0.788	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13257128	2R_13257128_INS [dm3] 2R_17369623_INS [dm6]	C	CTCCA	7.444e^-5	0.788	INTRON mbl
2L	9400617	2L_9400617_SNP [dm3] 2L_9400617_SNP [dm6]	C	T	7.509e^-5	0.788	INTRON Shawl
X	5579454	X_5579454_DEL [dm3] X_5685421_DEL [dm6]	ACAGAGTGATTAATACAA...	A	7.559e^-5	0.788	UTR_3_PRIME CG3160 DOWNSTREAM CG42449
2L	19639363	2L_19639363_SNP [dm3] 2L_19639363_SNP [dm6]	C	A	7.899e^-5	0.788	INTRON Lar
2R	13612768	2R_13612768_SNP [dm3] 2R_17725263_SNP [dm6]	T	G	7.945e^-5	0.788	UTR_3_PRIME Snx16 DOWNSTREAM CG10933	TF binding site mE1_TFBS_HSA
2R	13510544	2R_13510544_SNP [dm3] 2R_17623039_SNP [dm6]	C	T	7.980e^-5	0.788	INTRON CG10936
2L	13843841	2L_13843841_SNP [dm3] 2L_13843841_SNP [dm6]	C	A	7.992e^-5	0.788	UPSTREAM CG33306 DOWNSTREAM CG8997 INTRON CenG1A
X	12927057	X_12927057_SNP [dm3] X_13033024_SNP [dm6]	T	A	8.089e^-5	0.788	INTRON rad	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	551991	2L_551991_SNP [dm3] 2L_551991_SNP [dm6]	C	T	8.113e^-5	0.788	UTR_5_PRIME Ets21C
2R	15263437	2R_15263437_SNP [dm3] 2R_19375932_SNP [dm6]	T	A	8.177e^-5	0.788	UPSTREAM CG10062 INTRON CG10062
2R	13250194	2R_13250194_SNP [dm3] 2R_17362689_SNP [dm6]	C	A	8.188e^-5	0.788	NON_SYNONYMOUS_CODING mbl INTRON mbl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11970992	2R_11970992_SNP [dm3] 2R_16083487_SNP [dm6]	C	T	8.222e^-5	0.788	SYNONYMOUS_CODING Dg	TF binding site mE1_TFBS_cad
2L	6867885	2L_6867885_SNP [dm3] 2L_6867885_SNP [dm6]	C	T	8.244e^-5	0.788	INTRON Nha1
X	20929798	X_20929798_SNP [dm3] X_21058771_SNP [dm6]	G	T	8.337e^-5	0.788	INTRON bves
3L	6051650	3L_6051650_SNP [dm3] 3L_6058550_SNP [dm6]	A	G	8.377e^-5	0.788	UPSTREAM CR45441 INTERGENIC
2L	9400445	2L_9400445_SNP [dm3] 2L_9400445_SNP [dm6]	T	A	8.385e^-5	0.788	INTRON Shawl
2L	8177770	2L_8177770_SNP [dm3] 2L_8177770_SNP [dm6]	G	C	8.428e^-5	0.788	INTRON Piezo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3783017	2R_3783017_SNP [dm3] 2R_7895512_SNP [dm6]	T	C	8.473e^-5	0.788	INTRON CG30377
3L	6808566	3L_6808566_SNP [dm3] 3L_6815466_SNP [dm6]	T	C	8.620e^-5	0.788	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	641094	2L_641094_SNP [dm3] 2L_641094_SNP [dm6]	C	T	8.684e^-5	0.788	SYNONYMOUS_CODING ds	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13510870	2R_13510870_SNP [dm3] 2R_17623365_SNP [dm6]	T	C	8.688e^-5	0.788	INTRON CG10936
3L	3097022	3L_3097022_SNP [dm3] 3L_3097022_SNP [dm6]	T	C	8.704e^-5	0.788	UPSTREAM tRNA:CR32286 & 1 other DOWNSTREAM tRNA:CR32289 & 2 others INTRON Cht7	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	17627081	X_17627081_SNP [dm3] X_17733048_SNP [dm6]	T	C	8.708e^-5	0.788	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10890851	2L_10890851_SNP [dm3] 2L_10890851_SNP [dm6]	T	C	8.753e^-5	0.788	INTERGENIC
2L	4094416	2L_4094416_SNP [dm3] 2L_4094416_SNP [dm6]	T	G	8.769e^-5	0.788	INTRON ed	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4647252	3L_4647252_SNP [dm3] 3L_4647252_SNP [dm6]	T	A	8.827e^-5	0.788	INTRON axo
2R	15410514	2R_15410514_SNP [dm3] 2R_19523009_SNP [dm6]	T	C	8.827e^-5	0.788	UTR_3_PRIME sm DOWNSTREAM sm
3R	17895175	3R_17895175_SNP [dm3] 3R_22069453_SNP [dm6]	T	C	8.833e^-5	0.788	INTRON how
2L	643218	2L_643218_SNP [dm3] 2L_643218_SNP [dm6]	C	T	8.877e^-5	0.788	SYNONYMOUS_CODING ds	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	9438647	2L_9438647_SNP [dm3] 2L_9438647_SNP [dm6]	G	A	8.893e^-5	0.788	INTRON numb	TF binding site BDTNP1_TFBS_dl
3R	10306422	3R_10306422_INS [dm3] 3R_14480700_INS [dm6]	T	TT	9.014e^-5	0.788	UTR_5_PRIME cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	4065018	X_4065018_SNP [dm3] X_4170985_SNP [dm6]	A	G	9.161e^-5	0.788	INTRON Fas2	TF binding site mE1_TFBS_inv
X	20919185	X_20919185_SNP [dm3] X_21048158_SNP [dm6]	C	T	9.202e^-5	0.788	SYNONYMOUS_CODING Cbs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15310964	2L_15310964_SNP [dm3] 2L_15310964_SNP [dm6]	C	T	9.279e^-5	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA
X	21126682	X_21126682_SNP [dm3] X_21255655_SNP [dm6]	C	A	9.359e^-5	0.788	INTRON CG32521
2L	18254861	2L_18254861_SNP [dm3] 2L_18254861_SNP [dm6]	G	T	9.399e^-5	0.788	INTRON CG42750	TF binding site BDTNP1_TFBS_twi
3L	18025880	3L_18025880_SNP [dm3] 3L_18032780_SNP [dm6]	T	C	9.498e^-5	0.788	INTRON Eip75B
3L	6050576	3L_6050576_SNP [dm3] 3L_6057476_SNP [dm6]	T	A	9.515e^-5	0.788	DOWNSTREAM tan INTERGENIC
3R	16653438	3R_16653438_SNP [dm3] 3R_20827716_SNP [dm6]	A	T	9.577e^-5	0.788	DOWNSTREAM CR44047 INTRON AdSS & 1 other	TF binding site BDTNP1_TFBS_twi
2L	4093971	2L_4093971_SNP [dm3] 2L_4093971_SNP [dm6]	A	G	9.660e^-5	0.788	INTRON ed	TF binding site BDTNP1_TFBS_twi
3R	18526992	3R_18526992_SNP [dm3] 3R_22701270_SNP [dm6]	C	T	9.661e^-5	0.788	UPSTREAM CG6972 DOWNSTREAM Cyp6d4 INTRON CCAP
2R	17592564	2R_17592564_SNP [dm3] 2R_21705059_SNP [dm6]	A	T	9.738e^-5	0.788	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12623587	2R_12623587_SNP [dm3] 2R_16736082_SNP [dm6]	A	G	9.740e^-5	0.788	DOWNSTREAM CG43104 INTERGENIC
2L	13672961	2L_13672961_SNP [dm3] 2L_13672961_SNP [dm6]	A	G	9.773e^-5	0.788	UTR_3_PRIME CG18507
2L	1728323	2L_1728323_SNP [dm3] 2L_1728323_SNP [dm6]	C	T	9.799e^-5	0.788	UTR_5_PRIME Eno UPSTREAM Eno & 1 other INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13616063	2L_13616063_SNP [dm3] 2L_13616063_SNP [dm6]	T	A	9.825e^-5	0.788	INTRON kuz	TF binding site mE1_TFBS_cad
3R	6666632	3R_6666632_SNP [dm3] 3R_10840910_SNP [dm6]	C	A	9.899e^-5	0.788	INTRON Cad86C	TF binding site mE1_TFBS_chinmo
2L	7632071	2L_7632071_SNP [dm3] 2L_7632071_SNP [dm6]	A	G	9.909e^-5	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	12307164	2L_12307164_SNP [dm3] 2L_12307164_SNP [dm6]	T	G	9.960e^-5	0.788	INTRON aret
2R	16580171	2R_16580171_SNP [dm3] 2R_20692666_SNP [dm6]	G	T	9.979e^-5	0.788	UPSTREAM CG13438 DOWNSTREAM CR44659 INTERGENIC
3R	9951951	3R_9951951_SNP [dm3] 3R_14126229_SNP [dm6]	T	C	1.021e^-4	0.788	SYNONYMOUS_CODING RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	13406907	2R_13406907_SNP [dm3] 2R_17519402_SNP [dm6]	G	C	1.024e^-4	0.788	UTR_3_PRIME Patronin DOWNSTREAM Patronin & 1 other
2R	17761266	2R_17761266_SNP [dm3] 2R_21873761_SNP [dm6]	G	C	1.025e^-4	0.788	INTRON Fili	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco
2L	9333483	2L_9333483_SNP [dm3] 2L_9333483_SNP [dm6]	C	A	1.028e^-4	0.788	UPSTREAM Eaat1 INTERGENIC
X	20477592	X_20477592_SNP [dm3] X_20606565_SNP [dm6]	A	G	1.032e^-4	0.788	INTRON RunxA
2L	7113438	2L_7113438_SNP [dm3] 2L_7113438_SNP [dm6]	T	C	1.034e^-4	0.788	INTRON Pvf3
3L	22151685	3L_22151685_SNP [dm3] 3L_22158585_SNP [dm6]	T	C	1.049e^-4	0.788	INTRON olf413
2R	20438711	2R_20438711_SNP [dm3] 2R_24551188_SNP [dm6]	T	C	1.049e^-4	0.788	INTRON CG4622 & 1 other
2R	12947100	2R_12947100_SNP [dm3] 2R_17059595_SNP [dm6]	A	C	1.051e^-4	0.788	UTR_3_PRIME CG8950 DOWNSTREAM CG8950 & 1 other
2L	9383527	2L_9383527_SNP [dm3] 2L_9383527_SNP [dm6]	A	G	1.060e^-4	0.788	INTRON Shawl
2R	11990965	2R_11990965_SNP [dm3] 2R_16103460_SNP [dm6]	C	A	1.063e^-4	0.788	UPSTREAM Rho1 & 1 other INTRON Rho1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	8807374	3L_8807374_SNP [dm3] 3L_8814274_SNP [dm6]	G	C	1.064e^-4	0.788	INTERGENIC
2R	17565814	2R_17565814_SNP [dm3] 2R_21678309_SNP [dm6]	C	T	1.066e^-4	0.788	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3051263	2L_3051263_SNP [dm3] 2L_3051263_SNP [dm6]	C	T	1.071e^-4	0.788	SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_chinmo
2L	2547199	2L_2547199_DEL [dm3] 2L_2547199_DEL [dm6]	GG	G	1.079e^-4	0.788	INTERGENIC
2L	564163	2L_564163_SNP [dm3] 2L_564163_SNP [dm6]	A	G	1.087e^-4	0.788	UTR_5_PRIME CG2794 UPSTREAM CG11835	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	11129711	2L_11129711_SNP [dm3] 2L_11129711_SNP [dm6]	C	T	1.098e^-4	0.788	SYNONYMOUS_CODING RfC38 DOWNSTREAM Nup160	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6808231	3L_6808231_SNP [dm3] 3L_6815131_SNP [dm6]	T	A	1.099e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9280751	3L_9280751_SNP [dm3] 3L_9287651_SNP [dm6]	T	C	1.100e^-4	0.788	UTR_3_PRIME GluRIB DOWNSTREAM GluRIB
3L	5717306	3L_5717306_SNP [dm3] 3L_5724206_SNP [dm6]	T	A	1.109e^-4	0.788	INTRON sif
3R	23717166	3R_23717166_SNP [dm3] 3R_27891444_SNP [dm6]	T	G	1.111e^-4	0.788	INTRON CG34353
3R	4703976	3R_4703976_SNP [dm3] 3R_8878254_SNP [dm6]	G	A	1.121e^-4	0.788	INTRON pyd
X	20929222	X_20929222_SNP [dm3] X_21058195_SNP [dm6]	C	T	1.123e^-4	0.788	INTRON bves
X	10396204	X_10396204_SNP [dm3] X_10502171_SNP [dm6]	T	C	1.129e^-4	0.788	INTRON spri	TF binding site mE1_TFBS_inv
3R	14813021	3R_14813021_SNP [dm3] 3R_18987299_SNP [dm6]	A	T	1.133e^-4	0.788	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	5579446	X_5579446_MNP [dm3] X_5685413_MNP [dm6]	CGA	TCC	1.137e^-4	0.788	UTR_3_PRIME CG3160 DOWNSTREAM CG42449
2R	19505412	2R_19505412_SNP [dm3] 2R_23617889_SNP [dm6]	A	T	1.150e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_D
2R	19070581	2R_19070581_SNP [dm3] 2R_23183058_SNP [dm6]	G	T	1.154e^-4	0.788	UPSTREAM CG13539 INTRON CG34371
X	9020777	X_9020777_DEL [dm3] X_9126744_DEL [dm6]	TT	T	1.161e^-4	0.788	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	9442578	2L_9442578_SNP [dm3] 2L_9442578_SNP [dm6]	G	A	1.162e^-4	0.788	INTRON numb
2L	6140901	2L_6140901_SNP [dm3] 2L_6140901_SNP [dm6]	G	T	1.163e^-4	0.788	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12921632	2L_12921632_SNP [dm3] 2L_12921632_SNP [dm6]	G	A	1.171e^-4	0.788	DOWNSTREAM ACXB INTRON ACXA
X	17331377	X_17331377_INS [dm3] X_17437344_INS [dm6]	T	TT	1.172e^-4	0.788	INTRON CG12994
2R	13252033	2R_13252033_SNP [dm3] 2R_17364528_SNP [dm6]	C	A	1.175e^-4	0.788	UTR_3_PRIME mbl INTRON mbl	TF binding site BDTNP1_TFBS_dl
3L	11091710	3L_11091710_SNP [dm3] 3L_11098610_SNP [dm6]	G	C	1.177e^-4	0.788	UTR_5_PRIME APP-BP1 UPSTREAM APP-BP1 & 1 other DOWNSTREAM pncr011:3L	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9410908	2L_9410908_SNP [dm3] 2L_9410908_SNP [dm6]	C	A	1.178e^-4	0.788	INTRON Shawl
2L	3294124	2L_3294124_SNP [dm3] 2L_3294124_SNP [dm6]	G	T	1.187e^-4	0.788	UTR_5_PRIME CG9664 DOWNSTREAM CG9663 INTRON CG9664	TF binding site mE1_TFBS_HSA
3L	19378731	3L_19378731_SNP [dm3] 3L_19385631_SNP [dm6]	C	T	1.187e^-4	0.788	INTRON CG32206
X	1822115	X_1822115_SNP [dm3] X_1928082_SNP [dm6]	G	A	1.190e^-4	0.788	UPSTREAM CG11596 DOWNSTREAM Ocrl INTRON CG11596	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	14846324	2R_14846324_SNP [dm3] 2R_18958819_SNP [dm6]	A	C	1.190e^-4	0.788	UTR_3_PRIME sano
2L	553918	2L_553918_SNP [dm3] 2L_553918_SNP [dm6]	C	A	1.192e^-4	0.788	UTR_3_PRIME rempA UPSTREAM Ets21C
2L	3089554	2L_3089554_SNP [dm3] 2L_3089554_SNP [dm6]	T	G	1.195e^-4	0.788	INTRON toc
2L	15751859	2L_15751859_SNP [dm3] 2L_15751859_SNP [dm6]	C	T	1.197e^-4	0.788	UPSTREAM l_2_35Di & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13251978	2R_13251978_SNP [dm3] 2R_17364473_SNP [dm6]	C	A	1.200e^-4	0.788	UTR_3_PRIME mbl INTRON mbl	TF binding site BDTNP1_TFBS_dl
3R	23796935	3R_23796935_SNP [dm3] 3R_27971213_SNP [dm6]	G	T	1.210e^-4	0.788	INTRON betaTub97EF
2L	13673143	2L_13673143_SNP [dm3] 2L_13673143_SNP [dm6]	A	T	1.214e^-4	0.788	DOWNSTREAM CG18507 INTERGENIC
3L	3100077	3L_3100077_SNP [dm3] 3L_3100077_SNP [dm6]	T	A	1.216e^-4	0.788	INTRON Cht7
2L	9267914	2L_9267914_SNP [dm3] 2L_9267914_SNP [dm6]	G	T	1.230e^-4	0.788	INTRON Ggamma30A
3R	7518935	3R_7518935_SNP [dm3] 3R_11693213_SNP [dm6]	C	G	1.237e^-4	0.788	DOWNSTREAM Fer3 INTERGENIC
2L	907487	2L_907487_SNP [dm3] 2L_907487_SNP [dm6]	T	C	1.246e^-4	0.788	INTERGENIC
3L	9900302	3L_9900302_SNP [dm3] 3L_9907202_SNP [dm6]	A	T	1.248e^-4	0.788	UPSTREAM CG34356 INTERGENIC
X	20919857	X_20919857_SNP [dm3] X_21048830_SNP [dm6]	C	T	1.248e^-4	0.788	SYNONYMOUS_CODING Cbs	TF binding site mE1_TFBS_chinmo
3R	19253403	3R_19253403_SNP [dm3] 3R_23427681_SNP [dm6]	C	A	1.251e^-4	0.788	INTRON CG4374
2L	14816274	2L_14816274_SNP [dm3] 2L_14816274_SNP [dm6]	T	G	1.258e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20920402	X_20920402_SNP [dm3] X_21049375_SNP [dm6]	T	A	1.263e^-4	0.788	DOWNSTREAM CG1518 & 1 other INTERGENIC
3R	17896037	3R_17896037_SNP [dm3] 3R_22070315_SNP [dm6]	C	A	1.264e^-4	0.788	INTRON how	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	10270698	3R_10270698_SNP [dm3] 3R_14444976_SNP [dm6]	C	T	1.265e^-4	0.788	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7663399	2L_7663399_SNP [dm3] 2L_7663399_SNP [dm6]	A	G	1.267e^-4	0.788	INTRON Slob
3R	23246664	3R_23246664_SNP [dm3] 3R_27420942_SNP [dm6]	G	C	1.269e^-4	0.788	INTRON side
2R	14523264	2R_14523264_SNP [dm3] 2R_18635759_SNP [dm6]	G	A	1.275e^-4	0.788	INTRON CG30122	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14804719	3R_14804719_SNP [dm3] 3R_18978997_SNP [dm6]	T	C	1.275e^-4	0.788	UTR_3_PRIME Smu1 UPSTREAM CG12269 DOWNSTREAM CG42613	TF binding site mE1_TFBS_sens
2R	14523244	2R_14523244_SNP [dm3] 2R_18635739_SNP [dm6]	A	T	1.278e^-4	0.788	INTRON CG30122	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6779948	3L_6779948_SNP [dm3] 3L_6786848_SNP [dm6]	A	G	1.279e^-4	0.788	EXON CR45759	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
X	4434810	X_4434810_SNP [dm3] X_4540777_SNP [dm6]	T	C	1.296e^-4	0.788	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	2351713	2R_2351713_SNP [dm3] 2R_6464208_SNP [dm6]	A	G	1.300e^-4	0.788	INTERGENIC	transposable element FlyBase
2L	3709247	2L_3709247_DEL [dm3] 2L_3709247_DEL [dm6]	CT	C	1.303e^-4	0.788	INTRON cutlet	TF binding site mE1_TFBS_cad
X	14321461	X_14321461_SNP [dm3] X_14427428_SNP [dm6]	C	T	1.306e^-4	0.788	INTRON dpr8
3L	6110403	3L_6110403_SNP [dm3] 3L_6117303_SNP [dm6]	G	C	1.313e^-4	0.788	INTRON Ets65A
X	21090164	X_21090164_SNP [dm3] X_21219137_SNP [dm6]	T	C	1.320e^-4	0.788	DOWNSTREAM CG32523 INTRON CG32521
3L	9280446	3L_9280446_SNP [dm3] 3L_9287346_SNP [dm6]	G	A	1.323e^-4	0.788	UTR_3_PRIME GluRIB DOWNSTREAM GluRIB
3R	3864602	3R_3864602_SNP [dm3] 3R_8038880_SNP [dm6]	A	G	1.330e^-4	0.788	EXON CR44936	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sbb
3R	19149771	3R_19149771_SNP [dm3] 3R_23324049_SNP [dm6]	A	T	1.333e^-4	0.788	INTRON pnt
3L	6734322	3L_6734322_SNP [dm3] 3L_6741222_SNP [dm6]	C	T	1.334e^-4	0.788	NON_SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	20058184	2R_20058184_SNP [dm3] 2R_24170661_SNP [dm6]	A	G	1.341e^-4	0.788	SYNONYMOUS_CODING CG3328	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7724824	3R_7724824_SNP [dm3] 3R_11899102_SNP [dm6]	T	C	1.346e^-4	0.788	SYNONYMOUS_CODING Cad87A DOWNSTREAM CG34307	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15948242	2L_15948242_SNP [dm3] 2L_15948242_SNP [dm6]	T	C	1.348e^-4	0.788	INTRON beat-Ib
2R	19505406	2R_19505406_SNP [dm3] 2R_23617883_SNP [dm6]	T	A	1.349e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	13505093	2R_13505093_SNP [dm3] 2R_17617588_SNP [dm6]	A	C	1.349e^-4	0.788	NON_SYNONYMOUS_CODING CG44403 DOWNSTREAM snoRNA:Or-aca4 INTRON CG10936
X	18041451	X_18041451_SNP [dm3] X_18147418_SNP [dm6]	G	A	1.349e^-4	0.788	INTERGENIC
3R	10000953	3R_10000953_SNP [dm3] 3R_14175231_SNP [dm6]	T	C	1.350e^-4	0.788	UTR_3_PRIME Dop1R1
2L	12921706	2L_12921706_SNP [dm3] 2L_12921706_SNP [dm6]	A	G	1.358e^-4	0.788	DOWNSTREAM ACXB INTRON ACXA
3L	18597535	3L_18597535_SNP [dm3] 3L_18604435_SNP [dm6]	A	G	1.358e^-4	0.788	INTRON CG4174 & 2 others
3R	10188586	3R_10188586_SNP [dm3] 3R_14362864_SNP [dm6]	C	T	1.364e^-4	0.788	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5757751	3L_5757751_SNP [dm3] 3L_5764651_SNP [dm6]	C	T	1.368e^-4	0.788	SPLICE_SITE_REGION CG10576 UPSTREAM snoRNA:Psi28S-1837c & 2 others DOWNSTREAM unsRNA:CG10576-a INTRON CG10576	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	2324141	2R_2324141_SNP [dm3] 2R_6436636_SNP [dm6]	T	C	1.372e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_sens
X	5742258	X_5742258_SNP [dm3] X_5848225_SNP [dm6]	G	A	1.378e^-4	0.788	INTERGENIC
2R	17565924	2R_17565924_SNP [dm3] 2R_21678419_SNP [dm6]	A	G	1.391e^-4	0.788	NON_SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3708954	2L_3708954_SNP [dm3] 2L_3708954_SNP [dm6]	T	C	1.393e^-4	0.788	INTRON cutlet	TF binding site mE1_TFBS_cad
X	15574724	X_15574724_SNP [dm3] X_15680691_SNP [dm6]	G	T	1.400e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10188017	3R_10188017_SNP [dm3] 3R_14362295_SNP [dm6]	A	G	1.400e^-4	0.788	UPSTREAM CG31320 INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	7969109	3L_7969109_SNP [dm3] 3L_7976009_SNP [dm6]	A	T	1.402e^-4	0.788	SYNONYMOUS_CODING HP4 UPSTREAM CG8209	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
3L	7551838	3L_7551838_SNP [dm3] 3L_7558738_SNP [dm6]	A	C	1.404e^-4	0.788	INTRON CG14837
3L	18273958	3L_18273958_SNP [dm3] 3L_18280858_SNP [dm6]	G	A	1.404e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	12947308	2R_12947308_SNP [dm3] 2R_17059803_SNP [dm6]	A	T	1.406e^-4	0.788	UTR_3_PRIME CG8950 DOWNSTREAM CG8950 & 1 other
2R	10807364	2R_10807364_SNP [dm3] 2R_14919859_SNP [dm6]	C	A	1.408e^-4	0.788	INTRON CG10249	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	3078239	3L_3078239_SNP [dm3] 3L_3078239_SNP [dm6]	C	T	1.409e^-4	0.788	INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	10306482	3R_10306482_SNP [dm3] 3R_14480760_SNP [dm6]	A	G	1.409e^-4	0.788	UTR_5_PRIME cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	13511208	2R_13511208_SNP [dm3] 2R_17623703_SNP [dm6]	A	G	1.411e^-4	0.788	INTRON CG10936
3R	9953490	3R_9953490_SNP [dm3] 3R_14127768_SNP [dm6]	T	C	1.411e^-4	0.788	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_sens
X	20522149	X_20522149_SNP [dm3] X_20651122_SNP [dm6]	G	T	1.433e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	13500807	X_13500807_SNP [dm3] X_13606774_SNP [dm6]	G	A	1.433e^-4	0.788	SYNONYMOUS_CODING CG11178	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17537338	3R_17537338_SNP [dm3] 3R_21711616_SNP [dm6]	T	A	1.435e^-4	0.788	INTRON CG31176
3R	21045899	3R_21045899_SNP [dm3] 3R_25220177_SNP [dm6]	T	C	1.436e^-4	0.788	SYNONYMOUS_CODING CG31103	TF binding site BDTNP1_TFBS_dl
X	4434811	X_4434811_SNP [dm3] X_4540778_SNP [dm6]	G	T	1.439e^-4	0.788	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	12921672	2L_12921672_SNP [dm3] 2L_12921672_SNP [dm6]	T	C	1.444e^-4	0.788	DOWNSTREAM ACXB INTRON ACXA
2R	17385663	2R_17385663_SNP [dm3] 2R_21498158_SNP [dm6]	A	G	1.444e^-4	0.788	UPSTREAM Fkbp14 DOWNSTREAM TAF1C-like INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18040037	X_18040037_SNP [dm3] X_18146004_SNP [dm6]	C	A	1.445e^-4	0.788	INTERGENIC
3L	8807299	3L_8807299_SNP [dm3] 3L_8814199_SNP [dm6]	G	A	1.450e^-4	0.788	INTERGENIC
3R	19253437	3R_19253437_SNP [dm3] 3R_23427715_SNP [dm6]	A	G	1.456e^-4	0.788	INTRON CG4374
2R	13511329	2R_13511329_SNP [dm3] 2R_17623824_SNP [dm6]	G	A	1.458e^-4	0.788	INTRON CG10936	TF binding site mE1_TFBS_sens
2L	3031919	2L_3031919_SNP [dm3] 2L_3031919_SNP [dm6]	C	T	1.460e^-4	0.788	DOWNSTREAM CG17258 INTRON GABPI	TF binding site mE1_TFBS_cad
2R	18859537	2R_18859537_SNP [dm3] 2R_22972014_SNP [dm6]	G	A	1.461e^-4	0.788	INTERGENIC
2R	13254397	2R_13254397_SNP [dm3] 2R_17366892_SNP [dm6]	T	A	1.465e^-4	0.788	INTRON mbl
3L	18951834	3L_18951834_SNP [dm3] 3L_18958734_SNP [dm6]	C	T	1.472e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	47847	2R_47847_SNP [dm3] 2R_4160342_SNP [dm6]	G	T	1.484e^-4	0.788	INTERGENIC
X	4064906	X_4064906_SNP [dm3] X_4170873_SNP [dm6]	C	T	1.492e^-4	0.788	INTRON Fas2	TF binding site mE1_TFBS_inv
3R	25655245	3R_25655245_SNP [dm3] 3R_29829523_SNP [dm6]	C	G	1.499e^-4	0.788	INTRON Atg16	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_Trl
2R	13252506	2R_13252506_SNP [dm3] 2R_17365001_SNP [dm6]	T	A	1.508e^-4	0.788	UTR_3_PRIME mbl INTRON mbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21126650	X_21126650_SNP [dm3] X_21255623_SNP [dm6]	C	A	1.510e^-4	0.788	INTRON CG32521
2R	13264170	2R_13264170_SNP [dm3] 2R_17376665_SNP [dm6]	C	T	1.512e^-4	0.788	UTR_3_PRIME mbl
3R	9735938	3R_9735938_SNP [dm3] 3R_13910216_SNP [dm6]	A	C	1.512e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	16155689	2R_16155689_SNP [dm3] 2R_20268184_SNP [dm6]	C	T	1.517e^-4	0.788	SYNONYMOUS_CODING CG8908	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14172958	3R_14172958_SNP [dm3] 3R_18347236_SNP [dm6]	A	C	1.517e^-4	0.788	INTRON CG15803
2R	12947371	2R_12947371_DEL [dm3] 2R_17059866_DEL [dm6]	TGTTTAACGTGAAAATAA...	GC	1.519e^-4	0.788	UTR_3_PRIME CG8950 DOWNSTREAM CG8950 & 1 other
3R	10485575	3R_10485575_SNP [dm3] 3R_14659853_SNP [dm6]	G	A	1.519e^-4	0.788	SYNONYMOUS_CODING Hexim DOWNSTREAM CG3505	TF binding site mE1_TFBS_HSA
3R	9649723	3R_9649723_SNP [dm3] 3R_13824001_SNP [dm6]	G	A	1.528e^-4	0.788	INTERGENIC
3R	22739007	3R_22739007_SNP [dm3] 3R_26913285_SNP [dm6]	T	C	1.532e^-4	0.788	UPSTREAM Ets97D INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	7875188	3L_7875188_SNP [dm3] 3L_7882088_SNP [dm6]	A	T	1.537e^-4	0.788	INTRON CG32365
2L	2857854	2L_2857854_DEL [dm3] 2L_2857854_DEL [dm6]	TTGGCATT	T	1.538e^-4	0.788	DOWNSTREAM RpS21 INTRON CG2991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	5773937	3R_5773937_SNP [dm3] 3R_9948215_SNP [dm6]	A	T	1.542e^-4	0.788	INTRON Glut4EF
3L	16485456	3L_16485456_SNP [dm3] 3L_16492356_SNP [dm6]	C	T	1.543e^-4	0.788	SYNONYMOUS_CODING CG42514 UTR_3_PRIME CG43373 INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	18025938	3L_18025938_SNP [dm3] 3L_18032838_SNP [dm6]	G	A	1.546e^-4	0.788	INTRON Eip75B
3L	18025929	3L_18025929_SNP [dm3] 3L_18032829_SNP [dm6]	C	T	1.556e^-4	0.788	INTRON Eip75B
2R	10294562	2R_10294562_SNP [dm3] 2R_14407057_SNP [dm6]	C	T	1.558e^-4	0.788	INTERGENIC
3R	24706842	3R_24706842_SNP [dm3] 3R_28881120_SNP [dm6]	T	C	1.559e^-4	0.788	SYNONYMOUS_CODING CG14527 UPSTREAM CG14523 INTRON CG33203
2L	12722081	2L_12722081_SNP [dm3] 2L_12722081_SNP [dm6]	T	C	1.562e^-4	0.788	UPSTREAM MRP & 1 other INTRON MRP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	12623582	2R_12623582_SNP [dm3] 2R_16736077_SNP [dm6]	C	G	1.567e^-4	0.788	DOWNSTREAM CG43104 INTERGENIC
2R	13408091	2R_13408091_SNP [dm3] 2R_17520586_SNP [dm6]	G	A	1.567e^-4	0.788	INTRON Patronin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1729260	2L_1729260_SNP [dm3] 2L_1729260_SNP [dm6]	A	G	1.572e^-4	0.788	SYNONYMOUS_CODING Rrp40 UPSTREAM Eno & 1 other INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	1818179	X_1818179_SNP [dm3] X_1924146_SNP [dm6]	T	G	1.583e^-4	0.788	SYNONYMOUS_CODING Ocrl	TF binding site mE1_TFBS_sens
2L	7627297	2L_7627297_SNP [dm3] 2L_7627297_SNP [dm6]	T	G	1.584e^-4	0.788	INTERGENIC
2L	563847	2L_563847_SNP [dm3] 2L_563847_SNP [dm6]	T	C	1.584e^-4	0.788	UPSTREAM CG2794 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2L	1139886	2L_1139886_SNP [dm3] 2L_1139886_SNP [dm6]	A	G	1.585e^-4	0.788	NON_SYNONYMOUS_CODING CG4577	TF binding site mE1_TFBS_cad
2L	7630502	2L_7630502_SNP [dm3] 2L_7630502_SNP [dm6]	C	T	1.591e^-4	0.788	INTERGENIC
X	11662170	X_11662170_SNP [dm3] X_11768137_SNP [dm6]	C	T	1.594e^-4	0.788	SYNONYMOUS_CODING m	TF binding site mE1_TFBS_chinmo
2R	17385796	2R_17385796_SNP [dm3] 2R_21498291_SNP [dm6]	G	C	1.595e^-4	0.788	UPSTREAM Fkbp14 DOWNSTREAM TAF1C-like INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	25092508	3R_25092508_SNP [dm3] 3R_29266786_SNP [dm6]	C	A	1.595e^-4	0.788	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18041449	X_18041449_SNP [dm3] X_18147416_SNP [dm6]	T	C	1.600e^-4	0.788	INTERGENIC
3R	10508787	3R_10508787_SNP [dm3] 3R_14683065_SNP [dm6]	C	T	1.603e^-4	0.788	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	548964	2L_548964_SNP [dm3] 2L_548964_SNP [dm6]	A	T	1.606e^-4	0.788	INTRON Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	11099558	2L_11099558_SNP [dm3] 2L_11099558_SNP [dm6]	C	A	1.607e^-4	0.788	SYNONYMOUS_CODING Ge-1
2R	13794303	2R_13794303_SNP [dm3] 2R_17906798_SNP [dm6]	C	T	1.609e^-4	0.788	INTRON Elk
3L	9285499	3L_9285499_SNP [dm3] 3L_9292399_SNP [dm6]	C	A	1.609e^-4	0.788	INTERGENIC
3L	1110808	3L_1110808_SNP [dm3] 3L_1110808_SNP [dm6]	G	C	1.610e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	15027542	2L_15027542_SNP [dm3] 2L_15027542_SNP [dm6]	T	C	1.614e^-4	0.788	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
2R	5984318	2R_5984318_INS [dm3] 2R_10096813_INS [dm6]	C	CGGC	1.621e^-4	0.788	UPSTREAM Jra DOWNSTREAM CG2269 INTRON Jra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
3L	763490	3L_763490_SNP [dm3] 3L_763490_SNP [dm6]	A	T	1.646e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	13253278	2R_13253278_SNP [dm3] 2R_17365773_SNP [dm6]	T	C	1.647e^-4	0.788	DOWNSTREAM mbl INTRON mbl	TF binding site mE1_TFBS_HSA
X	18040155	X_18040155_SNP [dm3] X_18146122_SNP [dm6]	G	A	1.652e^-4	0.788	INTERGENIC
3L	11091811	3L_11091811_SNP [dm3] 3L_11098711_SNP [dm6]	A	G	1.653e^-4	0.788	SYNONYMOUS_CODING APP-BP1 UPSTREAM CG6272 DOWNSTREAM pncr011:3L	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17761233	2R_17761233_SNP [dm3] 2R_21873728_SNP [dm6]	G	A	1.658e^-4	0.788	INTRON Fili	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco
2R	13657903	2R_13657903_SNP [dm3] 2R_17770398_SNP [dm6]	C	A	1.660e^-4	0.788	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15197071	2R_15197071_SNP [dm3] 2R_19309566_SNP [dm6]	C	A	1.663e^-4	0.788	SYNONYMOUS_CODING EndoB
2L	1145356	2L_1145356_SNP [dm3] 2L_1145356_SNP [dm6]	A	T	1.668e^-4	0.788	INTRON MFS3	TF binding site mE1_TFBS_cad
2L	15927274	2L_15927274_SNP [dm3] 2L_15927274_SNP [dm6]	A	G	1.671e^-4	0.788	DOWNSTREAM CG4793 INTRON beat-Ib	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	1741909	2R_1741909_SNP [dm3] 2R_5854404_SNP [dm6]	G	A	1.673e^-4	0.788	INTRON dpr12
3R	7724194	3R_7724194_SNP [dm3] 3R_11898472_SNP [dm6]	A	G	1.683e^-4	0.788	SYNONYMOUS_CODING Cad87A DOWNSTREAM CG34307
3L	13616697	3L_13616697_DEL [dm3] 3L_13623597_DEL [dm6]	AG	A	1.686e^-4	0.788	INTRON bru-3
X	4434794	X_4434794_SNP [dm3] X_4540761_SNP [dm6]	C	A	1.687e^-4	0.788	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	2609864	2L_2609864_SNP [dm3] 2L_2609864_SNP [dm6]	A	G	1.693e^-4	0.788	UPSTREAM CG15395 INTERGENIC	TF binding site mE1_TFBS_inv
2R	13794296	2R_13794296_SNP [dm3] 2R_17906791_SNP [dm6]	G	T	1.702e^-4	0.788	INTRON Elk
3L	6808431	3L_6808431_SNP [dm3] 3L_6815331_SNP [dm6]	C	G	1.703e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	553909	2L_553909_SNP [dm3] 2L_553909_SNP [dm6]	G	T	1.703e^-4	0.788	UTR_3_PRIME rempA UPSTREAM Ets21C
2L	6688661	2L_6688661_SNP [dm3] 2L_6688661_SNP [dm6]	A	G	1.706e^-4	0.788	NON_SYNONYMOUS_CODING Tsp DOWNSTREAM Tsp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19610653	2R_19610653_SNP [dm3] 2R_23723130_SNP [dm6]	G	A	1.709e^-4	0.788	INTRON Sesn
X	6097839	X_6097839_SNP [dm3] X_6203806_SNP [dm6]	G	C	1.720e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_inv
2L	3017899	2L_3017899_SNP [dm3] 2L_3017899_SNP [dm6]	C	T	1.722e^-4	0.788	NON_SYNONYMOUS_CODING CG17224 UPSTREAM CG17264
2L	8181341	2L_8181341_SNP [dm3] 2L_8181341_SNP [dm6]	C	T	1.722e^-4	0.788	UTR_3_PRIME Piezo INTRON Piezo
2L	3001654	2L_3001654_DEL [dm3] 2L_3001654_DEL [dm6]	TGGAGTATAATGATCTTTTG...	T	1.739e^-4	0.788	INTRON CG17265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna
2R	12947102	2R_12947102_SNP [dm3] 2R_17059597_SNP [dm6]	T	C	1.740e^-4	0.788	UTR_3_PRIME CG8950 DOWNSTREAM CG8950 & 1 other
3L	8807483	3L_8807483_SNP [dm3] 3L_8814383_SNP [dm6]	G	A	1.741e^-4	0.788	INTERGENIC
2L	2857879	2L_2857879_DEL [dm3] 2L_2857879_DEL [dm6]	TTTTGCTGTATCCTAAA...	G	1.743e^-4	0.788	DOWNSTREAM RpS21 INTRON CG2991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	13657172	2R_13657172_SNP [dm3] 2R_17769667_SNP [dm6]	G	A	1.753e^-4	0.788	SYNONYMOUS_CODING CG18635 DOWNSTREAM CG6362	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	20927599	X_20927599_SNP [dm3] X_21056572_SNP [dm6]	G	C	1.755e^-4	0.788	INTRON bves	TF binding site mE1_TFBS_Trl
X	7632849	X_7632849_SNP [dm3] X_7738816_SNP [dm6]	A	T	1.761e^-4	0.788	INTRON Tom40	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7568154	3L_7568154_SNP [dm3] 3L_7575054_SNP [dm6]	T	C	1.771e^-4	0.788	INTERGENIC
2L	18269028	2L_18269028_SNP [dm3] 2L_18269028_SNP [dm6]	G	T	1.772e^-4	0.788	INTRON CG42750
2L	1013296	2L_1013296_SNP [dm3] 2L_1013296_SNP [dm6]	T	C	1.776e^-4	0.788	UTR_3_PRIME IA-2
3L	1462825	3L_1462825_SNP [dm3] 3L_1462825_SNP [dm6]	T	C	1.781e^-4	0.788	UPSTREAM CR44842 & 1 other INTRON Ptp61F	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13484683	3R_13484683_SNP [dm3] 3R_17658961_SNP [dm6]	T	C	1.782e^-4	0.788	UPSTREAM tRNA:CR31575 INTRON CG14322
X	16054809	X_16054809_SNP [dm3] X_16160776_SNP [dm6]	G	A	1.795e^-4	0.788	INTERGENIC
2L	4053271	2L_4053271_SNP [dm3] 2L_4053271_SNP [dm6]	G	A	1.801e^-4	0.788	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14526114	2R_14526114_SNP [dm3] 2R_18638609_SNP [dm6]	G	C	1.812e^-4	0.788	NON_SYNONYMOUS_CODING CG30122 UPSTREAM tRNA:CR30227	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	16423817	3L_16423817_SNP [dm3] 3L_16430717_SNP [dm6]	T	C	1.818e^-4	0.788	INTRON CG33158 & 1 other
X	14084707	X_14084707_SNP [dm3] X_14190674_SNP [dm6]	G	A	1.818e^-4	0.788	UTR_3_PRIME CG11585 DOWNSTREAM CG13403
2R	13406896	2R_13406896_SNP [dm3] 2R_17519391_SNP [dm6]	A	G	1.829e^-4	0.788	UTR_3_PRIME Patronin DOWNSTREAM Patronin & 1 other
3R	24707221	3R_24707221_SNP [dm3] 3R_28881499_SNP [dm6]	A	C	1.839e^-4	0.788	NON_SYNONYMOUS_CODING CG14527 INTRON CG33203
2L	13713467	2L_13713467_SNP [dm3] 2L_13713467_SNP [dm6]	A	C	1.841e^-4	0.788	INTRON CG31814
3R	18526797	3R_18526797_SNP [dm3] 3R_22701075_SNP [dm6]	G	A	1.843e^-4	0.788	UPSTREAM CG6972 DOWNSTREAM Cyp6d4 INTRON CCAP
2L	2664422	2L_2664422_SNP [dm3] 2L_2664422_SNP [dm6]	A	G	1.844e^-4	0.788	UPSTREAM CG9879 INTERGENIC
2L	13713389	2L_13713389_SNP [dm3] 2L_13713389_SNP [dm6]	A	G	1.846e^-4	0.788	INTRON CG31814
3L	9279329	3L_9279329_SNP [dm3] 3L_9286229_SNP [dm6]	G	T	1.847e^-4	0.788	UTR_3_PRIME GluRIB
3R	20721705	3R_20721705_SNP [dm3] 3R_24895983_SNP [dm6]	T	C	1.848e^-4	0.788	SYNONYMOUS_CODING CG11069
2R	13253284	2R_13253284_SNP [dm3] 2R_17365779_SNP [dm6]	G	T	1.853e^-4	0.788	DOWNSTREAM mbl INTRON mbl	TF binding site mE1_TFBS_HSA
X	8267266	X_8267266_SNP [dm3] X_8373233_SNP [dm6]	T	G	1.860e^-4	0.788	INTERGENIC
X	20919342	X_20919342_SNP [dm3] X_21048315_SNP [dm6]	G	C	1.865e^-4	0.788	NON_SYNONYMOUS_CODING Cbs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5783277	3R_5783277_SNP [dm3] 3R_9957555_SNP [dm6]	C	T	1.875e^-4	0.788	INTRON Glut4EF
2L	9403671	2L_9403671_SNP [dm3] 2L_9403671_SNP [dm6]	C	T	1.881e^-4	0.788	INTRON Shawl
2R	18584751	2R_18584751_SNP [dm3] 2R_22697246_SNP [dm6]	T	C	1.890e^-4	0.788	NON_SYNONYMOUS_CODING robo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19665901	2R_19665901_SNP [dm3] 2R_23778378_SNP [dm6]	T	C	1.891e^-4	0.788	INTRON CG9850
2R	12624850	2R_12624850_SNP [dm3] 2R_16737345_SNP [dm6]	T	C	1.892e^-4	0.788	NON_SYNONYMOUS_CODING CG43104 UPSTREAM CR44464
2L	3033590	2L_3033590_SNP [dm3] 2L_3033590_SNP [dm6]	A	C	1.895e^-4	0.788	INTRON CG17258	TF binding site mE1_TFBS_chinmo
2R	17385226	2R_17385226_SNP [dm3] 2R_21497721_SNP [dm6]	T	A	1.902e^-4	0.788	UPSTREAM Fkbp14 INTRON Fkbp14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	7370303	3L_7370303_SNP [dm3] 3L_7377203_SNP [dm6]	G	T	1.902e^-4	0.788	INTRON SMSr
2R	18552110	2R_18552110_SNP [dm3] 2R_22664605_SNP [dm6]	A	T	1.903e^-4	0.788	DOWNSTREAM CG4250 INTERGENIC
3L	13382915	3L_13382915_SNP [dm3] 3L_13389815_SNP [dm6]	C	T	1.907e^-4	0.788	NON_SYNONYMOUS_CODING Poc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	10890166	2L_10890166_SNP [dm3] 2L_10890166_SNP [dm6]	T	C	1.908e^-4	0.788	INTERGENIC
2L	11129729	2L_11129729_SNP [dm3] 2L_11129729_SNP [dm6]	G	C	1.909e^-4	0.788	SYNONYMOUS_CODING RfC38 DOWNSTREAM Nup160	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12386550	2R_12386550_SNP [dm3] 2R_16499045_SNP [dm6]	C	T	1.918e^-4	0.788	INTRON CG7813	TF binding site BDTNP1_TFBS_dl
X	15535082	X_15535082_DEL [dm3] X_15641049_DEL [dm6]	GTAGATTCTCTTATTG...	G	1.928e^-4	0.788	DOWNSTREAM CR44893 INTERGENIC
2L	643211	2L_643211_SNP [dm3] 2L_643211_SNP [dm6]	A	G	1.929e^-4	0.788	SYNONYMOUS_CODING ds	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	15405895	X_15405895_SNP [dm3] X_15511862_SNP [dm6]	A	G	1.938e^-4	0.788	UTR_3_PRIME Ac13E DOWNSTREAM Gmap
2R	20002887	2R_20002887_SNP [dm3] 2R_24115364_SNP [dm6]	C	T	1.940e^-4	0.788	SYNONYMOUS_CODING CG3253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	20137247	2R_20137247_SNP [dm3] 2R_24249724_SNP [dm6]	G	A	1.941e^-4	0.788	SYNONYMOUS_CODING Ir60a INTRON nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9422716	3L_9422716_SNP [dm3] 3L_9429616_SNP [dm6]	T	C	1.946e^-4	0.788	UPSTREAM MTF-1 & 1 other DOWNSTREAM Shc INTRON RpS17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12653049	2L_12653049_SNP [dm3] 2L_12653049_SNP [dm6]	A	T	1.948e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8177908	2L_8177908_SNP [dm3] 2L_8177908_SNP [dm6]	G	A	1.950e^-4	0.788	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_HSA
3L	18266240	3L_18266240_SNP [dm3] 3L_18273140_SNP [dm6]	G	A	1.952e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	13672946	2L_13672946_SNP [dm3] 2L_13672946_SNP [dm6]	C	T	1.955e^-4	0.788	UTR_3_PRIME CG18507
3L	7699332	3L_7699332_SNP [dm3] 3L_7706232_SNP [dm6]	C	T	1.957e^-4	0.788	SYNONYMOUS_CODING Ank2 INTRON CG32373
3R	13484574	3R_13484574_SNP [dm3] 3R_17658852_SNP [dm6]	G	A	1.962e^-4	0.788	UPSTREAM tRNA:CR31575 INTRON CG14322
2L	18275282	2L_18275282_SNP [dm3] 2L_18275282_SNP [dm6]	A	C	1.962e^-4	0.788	INTRON CG42750
3R	10179615	3R_10179615_INS [dm3] 3R_14353893_INS [dm6]	A	TT	1.968e^-4	0.788	INTRON NK7.1
2L	20724647	2L_20724647_SNP [dm3] 2L_20724647_SNP [dm6]	T	G	1.969e^-4	0.788	UTR_3_PRIME CG9316
2R	19286755	2R_19286755_SNP [dm3] 2R_23399232_SNP [dm6]	G	A	1.974e^-4	0.788	INTRON CG3520	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13672977	2L_13672977_SNP [dm3] 2L_13672977_SNP [dm6]	A	G	1.990e^-4	0.788	DOWNSTREAM CG18507 INTERGENIC
2R	16580248	2R_16580248_SNP [dm3] 2R_20692743_SNP [dm6]	T	C	1.991e^-4	0.788	UPSTREAM CG13438 DOWNSTREAM CR44659 INTERGENIC
2R	16580251	2R_16580251_SNP [dm3] 2R_20692746_SNP [dm6]	G	C	1.991e^-4	0.788	UPSTREAM CG13438 DOWNSTREAM CR44659 INTERGENIC
2R	18935431	2R_18935431_SNP [dm3] 2R_23047908_SNP [dm6]	G	C	1.996e^-4	0.788	SYNONYMOUS_CODING twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6051503	3L_6051503_SNP [dm3] 3L_6058403_SNP [dm6]	C	A	2.000e^-4	0.788	UPSTREAM CR45441 INTERGENIC
2L	560817	2L_560817_SNP [dm3] 2L_560817_SNP [dm6]	A	G	2.000e^-4	0.788	NON_SYNONYMOUS_CODING CG11835 UPSTREAM rempA DOWNSTREAM CG2789	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13672994	2L_13672994_SNP [dm3] 2L_13672994_SNP [dm6]	T	A	2.001e^-4	0.788	DOWNSTREAM CG18507 INTERGENIC
2R	13612803	2R_13612803_SNP [dm3] 2R_17725298_SNP [dm6]	T	C	2.007e^-4	0.788	UTR_3_PRIME Snx16 DOWNSTREAM CG10933	TF binding site mE1_TFBS_HSA
2L	3244349	2L_3244349_SNP [dm3] 2L_3244349_SNP [dm6]	C	G	2.009e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3703472	2L_3703472_SNP [dm3] 2L_3703472_SNP [dm6]	G	A	2.009e^-4	0.788	UPSTREAM CG2816 DOWNSTREAM CR44311 & 1 other INTERGENIC
2L	13672973	2L_13672973_SNP [dm3] 2L_13672973_SNP [dm6]	G	T	2.012e^-4	0.788	DOWNSTREAM CG18507 INTERGENIC
2R	16919790	2R_16919790_SNP [dm3] 2R_21032285_SNP [dm6]	G	C	2.013e^-4	0.788	INTERGENIC
2L	6078028	2L_6078028_SNP [dm3] 2L_6078028_SNP [dm6]	A	T	2.019e^-4	0.788	UPSTREAM CR9162 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	11633666	2L_11633666_SNP [dm3] 2L_11633666_SNP [dm6]	C	A	2.027e^-4	0.788	INTERGENIC
2L	11213150	2L_11213150_SNP [dm3] 2L_11213150_SNP [dm6]	A	T	2.031e^-4	0.788	INTRON ab
X	8874855	X_8874855_INS [dm3] X_8980822_INS [dm6]	A	AC	2.041e^-4	0.788	INTRON rdgA & 1 other
2R	12623153	2R_12623153_SNP [dm3] 2R_16735648_SNP [dm6]	A	T	2.055e^-4	0.788	INTERGENIC
3L	17302041	3L_17302041_SNP [dm3] 3L_17308941_SNP [dm6]	C	T	2.057e^-4	0.788	INTERGENIC
2R	16580099	2R_16580099_SNP [dm3] 2R_20692594_SNP [dm6]	T	C	2.064e^-4	0.788	UPSTREAM CG13438 DOWNSTREAM CR44659 INTERGENIC
3L	22597542	3L_22597542_SNP [dm3] 3L_22604442_SNP [dm6]	G	A	2.064e^-4	0.788	INTRON CG14459
3L	9903807	3L_9903807_SNP [dm3] 3L_9910707_SNP [dm6]	A	T	2.065e^-4	0.788	INTRON CG34356
2L	11055147	2L_11055147_SNP [dm3] 2L_11055147_SNP [dm6]	C	A	2.067e^-4	0.788	INTRON Samuel	TF binding site BDTNP1_TFBS_dl
2L	2588702	2L_2588702_SNP [dm3] 2L_2588702_SNP [dm6]	T	C	2.070e^-4	0.788	INTERGENIC
3R	10509018	3R_10509018_SNP [dm3] 3R_14683296_SNP [dm6]	C	T	2.075e^-4	0.788	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3L	14601792	3L_14601792_SNP [dm3] 3L_14608692_SNP [dm6]	A	T	2.076e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_HSA
X	20929227	X_20929227_SNP [dm3] X_21058200_SNP [dm6]	C	T	2.094e^-4	0.788	INTRON bves
X	12749881	X_12749881_SNP [dm3] X_12855848_SNP [dm6]	G	A	2.096e^-4	0.788	SYNONYMOUS_CODING CG4661 INTRON Pde9
2R	11908794	2R_11908794_INS [dm3] 2R_16021289_INS [dm6]	A	ATGAAGAACTTAA...	2.099e^-4	0.788	INTRON CG8399
3L	8448438	3L_8448438_SNP [dm3] 3L_8455338_SNP [dm6]	C	G	2.106e^-4	0.788	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6928769	3R_6928769_SNP [dm3] 3R_11103047_SNP [dm6]	A	T	2.114e^-4	0.788	INTERGENIC
2L	20243237	2L_20243237_SNP [dm3] 2L_20243237_SNP [dm6]	C	A	2.126e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	1873113	3L_1873113_SNP [dm3] 3L_1873113_SNP [dm6]	T	C	2.131e^-4	0.788	SPLICE_SITE_REGION dre4 INTRON dre4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18584750	2R_18584750_SNP [dm3] 2R_22697245_SNP [dm6]	G	A	2.133e^-4	0.788	NON_SYNONYMOUS_CODING robo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5717286	3L_5717286_SNP [dm3] 3L_5724186_SNP [dm6]	G	T	2.138e^-4	0.788	INTRON sif
2L	7631642	2L_7631642_SNP [dm3] 2L_7631642_SNP [dm6]	A	G	2.141e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	13673010	2L_13673010_SNP [dm3] 2L_13673010_SNP [dm6]	A	G	2.141e^-4	0.788	DOWNSTREAM CG18507 INTERGENIC
3R	21594538	3R_21594538_SNP [dm3] 3R_25768816_SNP [dm6]	G	A	2.152e^-4	0.788	INTERGENIC
3L	6052817	3L_6052817_SNP [dm3] 3L_6059717_SNP [dm6]	T	A	2.168e^-4	0.788	UTR_5_PRIME CG6592 DOWNSTREAM CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_inv
2L	7631884	2L_7631884_SNP [dm3] 2L_7631884_SNP [dm6]	T	C	2.168e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	8880868	3L_8880868_SNP [dm3] 3L_8887768_SNP [dm6]	T	A	2.174e^-4	0.788	DOWNSTREAM CG43169 INTRON dally
3L	14894011	3L_14894011_SNP [dm3] 3L_14900911_SNP [dm6]	T	C	2.176e^-4	0.788	INTERGENIC
3R	5526308	3R_5526308_DEL [dm3] 3R_9700586_DEL [dm6]	TAA	T	2.176e^-4	0.788	UPSTREAM Unc-115a INTRON Unc-115a	TF binding site BDTNP1_TFBS_prd
3L	7568136	3L_7568136_SNP [dm3] 3L_7575036_SNP [dm6]	A	G	2.177e^-4	0.788	INTERGENIC
2L	15860480	2L_15860480_SNP [dm3] 2L_15860480_SNP [dm6]	C	A	2.184e^-4	0.788	INTERGENIC
3L	4647143	3L_4647143_SNP [dm3] 3L_4647143_SNP [dm6]	A	T	2.196e^-4	0.788	INTRON axo
2R	13259103	2R_13259103_SNP [dm3] 2R_17371598_SNP [dm6]	A	C	2.196e^-4	0.788	INTRON mbl
2L	2609851	2L_2609851_SNP [dm3] 2L_2609851_SNP [dm6]	T	C	2.201e^-4	0.788	UPSTREAM CG15395 INTERGENIC
2L	2664339	2L_2664339_SNP [dm3] 2L_2664339_SNP [dm6]	A	G	2.209e^-4	0.788	UPSTREAM CG9879 INTERGENIC
X	16054820	X_16054820_SNP [dm3] X_16160787_SNP [dm6]	G	A	2.214e^-4	0.788	INTERGENIC
X	20920259	X_20920259_SNP [dm3] X_21049232_SNP [dm6]	T	A	2.215e^-4	0.788	DOWNSTREAM CG1518 & 1 other INTERGENIC
2L	7812197	2L_7812197_SNP [dm3] 2L_7812197_SNP [dm6]	C	T	2.219e^-4	0.788	INTRON LanB1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12809560	3R_12809560_SNP [dm3] 3R_16983838_SNP [dm6]	C	T	2.229e^-4	0.788	NON_SYNONYMOUS_CODING CG18622	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	8251860	2L_8251860_SNP [dm3] 2L_8251860_SNP [dm6]	C	T	2.235e^-4	0.788	INTRON CG8086
2R	2019705	2R_2019705_SNP [dm3] 2R_6132200_SNP [dm6]	C	T	2.236e^-4	0.788	UPSTREAM EcR INTRON EcR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
2L	7196056	2L_7196056_INS [dm3] 2L_7196056_INS [dm6]	G	GGA	2.249e^-4	0.788	SPLICE_SITE_REGION CG4502 INTRON CG4502
X	11217962	X_11217962_SNP [dm3] X_11323929_SNP [dm6]	C	T	2.253e^-4	0.788	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	10119968	2L_10119968_SNP [dm3] 2L_10119968_SNP [dm6]	A	G	2.258e^-4	0.788	INTRON CG44153 & 1 other
X	8416038	X_8416038_SNP [dm3] X_8522005_SNP [dm6]	A	G	2.262e^-4	0.788	INTRON Nrg
2L	15740660	2L_15740660_SNP [dm3] 2L_15740660_SNP [dm6]	C	G	2.265e^-4	0.788	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2857826	2L_2857826_SNP [dm3] 2L_2857826_SNP [dm6]	C	T	2.266e^-4	0.788	DOWNSTREAM RpS21 INTRON CG2991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11111328	2L_11111328_SNP [dm3] 2L_11111328_SNP [dm6]	C	T	2.275e^-4	0.788	NON_SYNONYMOUS_CODING CG6201 DOWNSTREAM l_2_gd1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23966197	3R_23966197_SNP [dm3] 3R_28140475_SNP [dm6]	A	G	2.290e^-4	0.788	INTERGENIC
2L	13862677	2L_13862677_SNP [dm3] 2L_13862677_SNP [dm6]	A	G	2.295e^-4	0.788	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	20049061	3L_20049061_SNP [dm3] 3L_20055961_SNP [dm6]	G	T	2.304e^-4	0.788	INTERGENIC
2L	5465756	2L_5465756_SNP [dm3] 2L_5465756_SNP [dm6]	C	A	2.305e^-4	0.788	INTRON mid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
X	20588138	X_20588138_SNP [dm3] X_20717111_SNP [dm6]	G	C	2.309e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	16822708	3L_16822708_SNP [dm3] 3L_16829608_SNP [dm6]	G	A	2.310e^-4	0.788	UPSTREAM CG13024 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	21594525	3R_21594525_SNP [dm3] 3R_25768803_SNP [dm6]	T	A	2.318e^-4	0.788	INTERGENIC
X	20444644	X_20444644_SNP [dm3] X_20573617_SNP [dm6]	T	A	2.326e^-4	0.788	UPSTREAM CG42580 INTERGENIC
3L	14174129	3L_14174129_SNP [dm3] 3L_14181029_SNP [dm6]	A	G	2.328e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	21126673	X_21126673_MNP [dm3] X_21255646_MNP [dm6]	TAT	ACC	2.328e^-4	0.788	INTRON CG32521
3L	6053107	3L_6053107_SNP [dm3] 3L_6060007_SNP [dm6]	A	T	2.333e^-4	0.788	NON_SYNONYMOUS_CODING CG6592 DOWNSTREAM CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	4228071	3R_4228071_SNP [dm3] 3R_8402349_SNP [dm6]	G	A	2.334e^-4	0.788	INTRON CG45263
2L	8540331	2L_8540331_DEL [dm3] 2L_8540331_DEL [dm6]	TATT	T	2.336e^-4	0.788	INTRON CG17834
3L	6005519	3L_6005519_SNP [dm3] 3L_6012419_SNP [dm6]	C	T	2.337e^-4	0.788	INTRON PVRAP
3R	12710770	3R_12710770_SNP [dm3] 3R_16885048_SNP [dm6]	T	C	2.339e^-4	0.788	INTRON iab-8
2L	12346983	2L_12346983_SNP [dm3] 2L_12346983_SNP [dm6]	T	C	2.342e^-4	0.788	UPSTREAM bru-2 INTRON bru-2	TF binding site BDTNP1_TFBS_dl
3R	14211468	3R_14211468_SNP [dm3] 3R_18385746_SNP [dm6]	C	A	2.347e^-4	0.788	UPSTREAM cona & 1 other INTERGENIC
3R	18760534	3R_18760534_SNP [dm3] 3R_22934812_SNP [dm6]	C	G	2.349e^-4	0.788	INTRON klg
X	21126695	X_21126695_SNP [dm3] X_21255668_SNP [dm6]	A	T	2.351e^-4	0.788	INTRON CG32521
X	21126699	X_21126699_SNP [dm3] X_21255672_SNP [dm6]	C	T	2.351e^-4	0.788	INTRON CG32521
3L	5717296	3L_5717296_SNP [dm3] 3L_5724196_SNP [dm6]	A	C	2.355e^-4	0.788	INTRON sif
X	8547501	X_8547501_SNP [dm3] X_8653468_SNP [dm6]	G	A	2.355e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16834057	3L_16834057_SNP [dm3] 3L_16840957_SNP [dm6]	A	G	2.359e^-4	0.788	INTERGENIC
2R	10294564	2R_10294564_SNP [dm3] 2R_14407059_SNP [dm6]	A	G	2.361e^-4	0.788	INTERGENIC
X	21126657	X_21126657_SNP [dm3] X_21255630_SNP [dm6]	A	G	2.361e^-4	0.788	INTRON CG32521
2L	5465619	2L_5465619_SNP [dm3] 2L_5465619_SNP [dm6]	A	G	2.362e^-4	0.788	INTRON mid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
3R	20748437	3R_20748437_SNP [dm3] 3R_24922715_SNP [dm6]	G	C	2.364e^-4	0.788	NON_SYNONYMOUS_CODING Mink DOWNSTREAM CG11168	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18266245	3L_18266245_SNP [dm3] 3L_18273145_SNP [dm6]	A	T	2.366e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12921708	2L_12921708_SNP [dm3] 2L_12921708_SNP [dm6]	T	C	2.376e^-4	0.788	DOWNSTREAM ACXB INTRON ACXA
3R	14812597	3R_14812597_SNP [dm3] 3R_18986875_SNP [dm6]	T	C	2.377e^-4	0.788	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3277717	X_3277717_SNP [dm3] X_3383684_SNP [dm6]	C	A	2.378e^-4	0.788	INTRON dm & 1 other
3L	14730245	3L_14730245_SNP [dm3] 3L_14737145_SNP [dm6]	G	A	2.380e^-4	0.788	INTRON ome
2L	8539395	2L_8539395_SNP [dm3] 2L_8539395_SNP [dm6]	G	A	2.381e^-4	0.788	INTRON CG17834
2R	13382741	2R_13382741_SNP [dm3] 2R_17495236_SNP [dm6]	T	C	2.383e^-4	0.788	INTRON CG30103	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13896198	2R_13896198_SNP [dm3] 2R_18008693_SNP [dm6]	T	C	2.394e^-4	0.788	UPSTREAM dpr13 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	13511567	2R_13511567_SNP [dm3] 2R_17624062_SNP [dm6]	G	T	2.397e^-4	0.788	INTRON CG10936	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18025944	3L_18025944_SNP [dm3] 3L_18032844_SNP [dm6]	G	A	2.397e^-4	0.788	INTRON Eip75B
3L	3080402	3L_3080402_SNP [dm3] 3L_3080402_SNP [dm6]	C	A	2.401e^-4	0.788	INTRON CG11486	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	19717349	3R_19717349_SNP [dm3] 3R_23891627_SNP [dm6]	G	T	2.402e^-4	0.788	UTR_3_PRIME tbrd-1 UPSTREAM TfIIA-S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6287228	2L_6287228_SNP [dm3] 2L_6287228_SNP [dm6]	A	G	2.405e^-4	0.788	INTRON Ddr	TF binding site BDTNP1_TFBS_twi
2L	8540401	2L_8540401_SNP [dm3] 2L_8540401_SNP [dm6]	T	C	2.412e^-4	0.788	INTRON CG17834
3R	4992909	3R_4992909_SNP [dm3] 3R_9167187_SNP [dm6]	C	T	2.425e^-4	0.788	INTRON pum
2R	14506557	2R_14506557_SNP [dm3] 2R_18619052_SNP [dm6]	C	G	2.429e^-4	0.788	DOWNSTREAM CG5327 INTRON CG5493	TF binding site BDTNP1_TFBS_z
2R	13407932	2R_13407932_SNP [dm3] 2R_17520427_SNP [dm6]	C	A	2.434e^-4	0.788	UTR_3_PRIME Patronin
X	4434730	X_4434730_SNP [dm3] X_4540697_SNP [dm6]	T	C	2.444e^-4	0.788	UPSTREAM CHOp24 & 1 other INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	14554174	2R_14554174_SNP [dm3] 2R_18666669_SNP [dm6]	A	G	2.445e^-4	0.788	UPSTREAM CG33136 DOWNSTREAM edl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2519372	2L_2519372_SNP [dm3] 2L_2519372_SNP [dm6]	C	T	2.445e^-4	0.788	INTERGENIC
2L	15926340	2L_15926340_INS [dm3] 2L_15926340_INS [dm6]	T	TG	2.458e^-4	0.788	DOWNSTREAM CG4793 INTRON beat-Ib	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	6052223	3L_6052223_DEL [dm3] 3L_6059123_DEL [dm6]	TT	T	2.458e^-4	0.788	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
X	21126671	X_21126671_SNP [dm3] X_21255644_SNP [dm6]	C	G	2.460e^-4	0.788	INTRON CG32521
3L	21457805	3L_21457805_SNP [dm3] 3L_21464705_SNP [dm6]	G	T	2.461e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	6664729	3R_6664729_SNP [dm3] 3R_10839007_SNP [dm6]	T	G	2.463e^-4	0.788	INTRON Cad86C
3R	19173927	3R_19173927_SNP [dm3] 3R_23348205_SNP [dm6]	C	G	2.466e^-4	0.788	NON_SYNONYMOUS_CODING DNApol-epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
3R	6800000	3R_6800000_SNP [dm3] 3R_10974278_SNP [dm6]	C	T	2.469e^-4	0.788	INTRON CG34114
2R	2052216	2R_2052216_SNP [dm3] 2R_6164711_SNP [dm6]	G	A	2.473e^-4	0.788	DOWNSTREAM tRNA:K2:42Ab INTRON EcR	TF binding site BDTNP1_TFBS_dl
3L	6112738	3L_6112738_INS [dm3] 3L_6119638_INS [dm6]	A	AA	2.474e^-4	0.788	INTRON Ets65A
2L	8992018	2L_8992018_SNP [dm3] 2L_8992018_SNP [dm6]	C	A	2.475e^-4	0.788	UTR_5_PRIME CG9555	TF binding site BDTNP1_TFBS_twi
2L	6601028	2L_6601028_SNP [dm3] 2L_6601028_SNP [dm6]	C	G	2.488e^-4	0.788	UTR_5_PRIME CG11319
3R	7707347	3R_7707347_SNP [dm3] 3R_11881625_SNP [dm6]	G	A	2.493e^-4	0.788	SYNONYMOUS_CODING CG6962	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	1755749	2R_1755749_SNP [dm3] 2R_5868244_SNP [dm6]	G	A	2.497e^-4	0.788	INTERGENIC
2R	9314302	2R_9314302_SNP [dm3] 2R_13426797_SNP [dm6]	G	T	2.500e^-4	0.788	INTRON CG42321	TF binding site BDTNP1_TFBS_twi
X	16116203	X_16116203_SNP [dm3] X_16222170_SNP [dm6]	T	A	2.501e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10204897	3R_10204897_SNP [dm3] 3R_14379175_SNP [dm6]	A	C	2.502e^-4	0.788	INTERGENIC
X	12927054	X_12927054_SNP [dm3] X_13033021_SNP [dm6]	A	T	2.506e^-4	0.788	INTRON rad	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6051438	3L_6051438_SNP [dm3] 3L_6058338_SNP [dm6]	T	A	2.508e^-4	0.788	UPSTREAM CR45441 INTERGENIC
2R	16580036	2R_16580036_SNP [dm3] 2R_20692531_SNP [dm6]	T	A	2.509e^-4	0.788	UPSTREAM CG13438 DOWNSTREAM CR44659 INTERGENIC
2R	5988799	2R_5988799_SNP [dm3] 2R_10101294_SNP [dm6]	A	T	2.514e^-4	0.788	INTRON 14-3-3zeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	5717299	3L_5717299_SNP [dm3] 3L_5724199_SNP [dm6]	A	T	2.514e^-4	0.788	INTRON sif
2L	3709246	2L_3709246_SNP [dm3] 2L_3709246_SNP [dm6]	T	A	2.516e^-4	0.788	INTRON cutlet	TF binding site mE1_TFBS_cad
2L	21592464	2L_21592464_SNP [dm3] 2L_21592464_SNP [dm6]	G	A	2.516e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
3L	10011783	3L_10011783_SNP [dm3] 3L_10018683_SNP [dm6]	G	A	2.520e^-4	0.788	INTRON dpr6
2R	16580046	2R_16580046_SNP [dm3] 2R_20692541_SNP [dm6]	C	T	2.521e^-4	0.788	UPSTREAM CG13438 DOWNSTREAM CR44659 INTERGENIC
2L	15926342	2L_15926342_INS [dm3] 2L_15926342_INS [dm6]	T	TTTGTTA	2.523e^-4	0.788	DOWNSTREAM CG4793 INTRON beat-Ib	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	11229514	3L_11229514_SNP [dm3] 3L_11236414_SNP [dm6]	T	C	2.528e^-4	0.788	UPSTREAM Ir68a & 1 other DOWNSTREAM CR44718 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16581925	2R_16581925_SNP [dm3] 2R_20694420_SNP [dm6]	T	C	2.530e^-4	0.788	DOWNSTREAM CG13438 INTERGENIC
3L	5717272	3L_5717272_SNP [dm3] 3L_5724172_SNP [dm6]	C	A	2.534e^-4	0.788	INTRON sif
X	20929816	X_20929816_SNP [dm3] X_21058789_SNP [dm6]	C	T	2.535e^-4	0.788	INTRON bves
2L	6319049	2L_6319049_INS [dm3] 2L_6319049_INS [dm6]	ATGTGT	CACATTC	2.536e^-4	0.788	INTRON Ddr
3L	10167435	3L_10167435_SNP [dm3] 3L_10174335_SNP [dm6]	T	A	2.536e^-4	0.788	INTRON dpr10
3L	19052595	3L_19052595_SNP [dm3] 3L_19059495_SNP [dm6]	G	A	2.544e^-4	0.788	UTR_3_PRIME CG3797 DOWNSTREAM CG3797	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14790368	2L_14790368_SNP [dm3] 2L_14790368_SNP [dm6]	G	A	2.548e^-4	0.788	INTERGENIC
2L	2878619	2L_2878619_SNP [dm3] 2L_2878619_SNP [dm6]	G	A	2.569e^-4	0.788	SYNONYMOUS_CODING CG31950 UPSTREAM betaggt-II & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	4065866	X_4065866_SNP [dm3] X_4171833_SNP [dm6]	C	A	2.571e^-4	0.788	INTRON Fas2
3R	14812825	3R_14812825_SNP [dm3] 3R_18987103_SNP [dm6]	C	T	2.571e^-4	0.788	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D
3L	14784932	3L_14784932_SNP [dm3] 3L_14791832_SNP [dm6]	A	G	2.574e^-4	0.788	INTRON CG9425
3R	6952180	3R_6952180_SNP [dm3] 3R_11126458_SNP [dm6]	C	T	2.581e^-4	0.788	DOWNSTREAM Ugt86Dd INTERGENIC
2L	3435319	2L_3435319_SNP [dm3] 2L_3435319_SNP [dm6]	G	A	2.585e^-4	0.788	INTERGENIC
2L	3858313	2L_3858313_SNP [dm3] 2L_3858313_SNP [dm6]	T	C	2.586e^-4	0.788	INTERGENIC
3R	1785600	3R_1785600_SNP [dm3] 3R_5959878_SNP [dm6]	A	T	2.587e^-4	0.788	UPSTREAM CG34113 DOWNSTREAM CG11373 INTERGENIC
2R	7929587	2R_7929587_SNP [dm3] 2R_12042082_SNP [dm6]	G	A	2.593e^-4	0.788	SYNONYMOUS_CODING RpIII128
2R	9568416	2R_9568416_SNP [dm3] 2R_13680911_SNP [dm6]	G	A	2.595e^-4	0.788	INTRON fas	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6052241	3L_6052241_SNP [dm3] 3L_6059141_SNP [dm6]	C	T	2.598e^-4	0.788	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2L	3742353	2L_3742353_DEL [dm3] 2L_3742353_DEL [dm6]	AC	A	2.603e^-4	0.788	INTRON CG10019
X	20922001	X_20922001_SNP [dm3] X_21050974_SNP [dm6]	A	T	2.604e^-4	0.788	DOWNSTREAM scaRNA:MeU2-C28 INTRON CG1518 EXON snoRNA:Me28S-U3344b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4164472	3L_4164472_SNP [dm3] 3L_4164472_SNP [dm6]	T	A	2.610e^-4	0.788	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9588368	3R_9588368_SNP [dm3] 3R_13762646_SNP [dm6]	C	T	2.621e^-4	0.788	DOWNSTREAM CG34383 INTRON CG34383
2L	19681557	2L_19681557_SNP [dm3] 2L_19681557_SNP [dm6]	A	T	2.625e^-4	0.788	INTRON Lar
3L	7875197	3L_7875197_SNP [dm3] 3L_7882097_SNP [dm6]	T	A	2.629e^-4	0.788	INTRON CG32365
X	20921133	X_20921133_SNP [dm3] X_21050106_SNP [dm6]	T	A	2.630e^-4	0.788	UTR_3_PRIME CG1518 DOWNSTREAM snoRNA:Me28S-U3344b	TF binding site mE1_TFBS_cad
3R	9649609	3R_9649609_SNP [dm3] 3R_13823887_SNP [dm6]	A	G	2.631e^-4	0.788	INTERGENIC
3L	7551885	3L_7551885_SNP [dm3] 3L_7558785_SNP [dm6]	T	A	2.640e^-4	0.788	INTRON CG14837
X	16093246	X_16093246_SNP [dm3] X_16199213_SNP [dm6]	T	C	2.645e^-4	0.788	INTERGENIC
2L	8251779	2L_8251779_SNP [dm3] 2L_8251779_SNP [dm6]	A	T	2.647e^-4	0.788	INTRON CG8086
X	20926259	X_20926259_SNP [dm3] X_21055232_SNP [dm6]	G	T	2.652e^-4	0.788	INTRON bves	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	13389295	2R_13389295_SNP [dm3] 2R_17501790_SNP [dm6]	T	A	2.652e^-4	0.788	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10336373	3L_10336373_DEL [dm3] 3L_10343273_DEL [dm6]	TT	T	2.653e^-4	0.788	INTERGENIC
2R	6530708	2R_6530708_SNP [dm3] 2R_10643203_SNP [dm6]	G	A	2.656e^-4	0.788	INTRON Git	TF binding site mE1_TFBS_HSA
2L	9401425	2L_9401425_SNP [dm3] 2L_9401425_SNP [dm6]	C	T	2.658e^-4	0.788	INTRON Shawl
X	21126677	X_21126677_SNP [dm3] X_21255650_SNP [dm6]	T	A	2.660e^-4	0.788	INTRON CG32521
2L	2304500	2L_2304500_SNP [dm3] 2L_2304500_SNP [dm6]	T	C	2.660e^-4	0.788	INTERGENIC
X	18421868	X_18421868_SNP [dm3] X_18527835_SNP [dm6]	A	G	2.665e^-4	0.788	SYNONYMOUS_CODING CG15042 UPSTREAM CG15047 INTRON Bx	TF binding site mE1_TFBS_chinmo
X	10481344	X_10481344_DEL [dm3] X_10587311_DEL [dm6]	AA	A	2.674e^-4	0.788	INTERGENIC
2R	9816890	2R_9816890_SNP [dm3] 2R_13929385_SNP [dm6]	C	T	2.674e^-4	0.788	INTRON shot
X	13500777	X_13500777_SNP [dm3] X_13606744_SNP [dm6]	A	G	2.677e^-4	0.788	SYNONYMOUS_CODING CG11178	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14812748	3R_14812748_SNP [dm3] 3R_18987026_SNP [dm6]	A	C	2.685e^-4	0.788	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D
2L	11677008	2L_11677008_INS [dm3] 2L_11677008_INS [dm6]	C	CCC	2.690e^-4	0.788	INTERGENIC
X	11218320	X_11218320_SNP [dm3] X_11324287_SNP [dm6]	G	A	2.691e^-4	0.788	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_Med
2R	19516326	2R_19516326_SNP [dm3] 2R_23628803_SNP [dm6]	G	C	2.719e^-4	0.788	INTERGENIC
3R	10818416	3R_10818416_SNP [dm3] 3R_14992694_SNP [dm6]	T	C	2.744e^-4	0.788	INTERGENIC
2L	1729261	2L_1729261_SNP [dm3] 2L_1729261_SNP [dm6]	C	T	2.746e^-4	0.788	SYNONYMOUS_CODING Rrp40 UPSTREAM Eno & 1 other INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3397193	3L_3397193_SNP [dm3] 3L_3397193_SNP [dm6]	A	T	2.758e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1105125	2L_1105125_SNP [dm3] 2L_1105125_SNP [dm6]	G	A	2.760e^-4	0.788	INTRON mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21126689	X_21126689_SNP [dm3] X_21255662_SNP [dm6]	T	C	2.761e^-4	0.788	INTRON CG32521
2L	14016587	2L_14016587_SNP [dm3] 2L_14016587_SNP [dm6]	T	A	2.767e^-4	0.788	NON_SYNONYMOUS_CODING bgm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19489894	2R_19489894_SNP [dm3] 2R_23602371_SNP [dm6]	T	C	2.775e^-4	0.788	UPSTREAM CG5398 & 2 others INTRON CG43209	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	25612312	3R_25612312_INS [dm3] 3R_29786590_INS [dm6]	A	AAAGTAACTGTTTGCA...	2.786e^-4	0.788	INTRON kay
2L	10777409	2L_10777409_SNP [dm3] 2L_10777409_SNP [dm6]	A	C	2.790e^-4	0.788	INTRON CG31869
2L	6581207	2L_6581207_SNP [dm3] 2L_6581207_SNP [dm6]	C	A	2.791e^-4	0.788	INTRON CG11319
2L	9413340	2L_9413340_SNP [dm3] 2L_9413340_SNP [dm6]	C	T	2.800e^-4	0.788	INTRON Shawl
X	14155302	X_14155302_SNP [dm3] X_14261269_SNP [dm6]	A	C	2.809e^-4	0.788	UTR_5_PRIME CG1461
3L	6109716	3L_6109716_SNP [dm3] 3L_6116616_SNP [dm6]	G	C	2.814e^-4	0.788	INTRON Ets65A	TF binding site mE1_TFBS_Kr
3L	6734977	3L_6734977_SNP [dm3] 3L_6741877_SNP [dm6]	T	A	2.825e^-4	0.788	INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
X	11661561	X_11661561_SNP [dm3] X_11767528_SNP [dm6]	G	A	2.829e^-4	0.788	SYNONYMOUS_CODING m	TF binding site mE1_TFBS_chinmo
3R	13595539	3R_13595539_SNP [dm3] 3R_17769817_SNP [dm6]	G	T	2.838e^-4	0.788	UTR_3_PRIME CG43102
2L	15765311	2L_15765311_SNP [dm3] 2L_15765311_SNP [dm6]	C	T	2.844e^-4	0.788	SYNONYMOUS_CODING CG3793 DOWNSTREAM wek	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13942750	3R_13942750_SNP [dm3] 3R_18117028_SNP [dm6]	C	T	2.844e^-4	0.788	INTRON sr
3L	1462830	3L_1462830_SNP [dm3] 3L_1462830_SNP [dm6]	G	C	2.847e^-4	0.788	UPSTREAM CR44842 & 1 other INTRON Ptp61F	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	553881	2L_553881_SNP [dm3] 2L_553881_SNP [dm6]	C	T	2.862e^-4	0.788	UTR_3_PRIME rempA UPSTREAM Ets21C
3R	21693434	3R_21693434_SNP [dm3] 3R_25867712_SNP [dm6]	G	T	2.863e^-4	0.788	INTRON CG5890
3R	21693448	3R_21693448_SNP [dm3] 3R_25867726_SNP [dm6]	A	G	2.863e^-4	0.788	INTRON CG5890
3L	6051898	3L_6051898_SNP [dm3] 3L_6058798_SNP [dm6]	A	G	2.864e^-4	0.788	UPSTREAM CR45441 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_run
3R	16797472	3R_16797472_SNP [dm3] 3R_20971750_SNP [dm6]	A	G	2.865e^-4	0.788	INTRON Atpalpha
3R	6677740	3R_6677740_SNP [dm3] 3R_10852018_SNP [dm6]	C	A	2.874e^-4	0.788	UPSTREAM CG4565 DOWNSTREAM CG42394 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	13287993	2L_13287993_SNP [dm3] 2L_13287993_SNP [dm6]	C	A	2.883e^-4	0.788	NON_SYNONYMOUS_CODING Uvrag DOWNSTREAM CR44972
3R	3494006	3R_3494006_SNP [dm3] 3R_7668284_SNP [dm6]	T	C	2.890e^-4	0.788	INTRON Nlg1
3R	24707236	3R_24707236_SNP [dm3] 3R_28881514_SNP [dm6]	A	G	2.894e^-4	0.788	NON_SYNONYMOUS_CODING CG14527 INTRON CG33203
3L	18026018	3L_18026018_SNP [dm3] 3L_18032918_SNP [dm6]	A	C	2.895e^-4	0.788	INTRON Eip75B
2R	7134954	2R_7134954_SNP [dm3] 2R_11247449_SNP [dm6]	T	G	2.895e^-4	0.788	UPSTREAM CG34227 DOWNSTREAM CR30029 INTERGENIC
2L	10762452	2L_10762452_SNP [dm3] 2L_10762452_SNP [dm6]	A	T	2.898e^-4	0.788	INTRON CG6495	TF binding site mE1_TFBS_cad
2L	10636903	2L_10636903_SNP [dm3] 2L_10636903_SNP [dm6]	C	T	2.900e^-4	0.788	INTRON CG7329
3L	6736379	3L_6736379_SNP [dm3] 3L_6743279_SNP [dm6]	A	G	2.905e^-4	0.788	UPSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk
3R	9946996	3R_9946996_SNP [dm3] 3R_14121274_SNP [dm6]	G	A	2.913e^-4	0.788	SYNONYMOUS_CODING Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8614058	2L_8614058_SNP [dm3] 2L_8614058_SNP [dm6]	A	G	2.913e^-4	0.788	INTRON Sema-1a
2R	17568895	2R_17568895_SNP [dm3] 2R_21681390_SNP [dm6]	C	G	2.923e^-4	0.788	INTRON CG30263
X	15574457	X_15574457_SNP [dm3] X_15680424_SNP [dm6]	T	G	2.923e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2898374	2R_2898374_SNP [dm3] 2R_7010869_SNP [dm6]	A	C	2.934e^-4	0.788	INTRON Tsp42Ed	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8323682	3L_8323682_SNP [dm3] 3L_8330582_SNP [dm6]	G	A	2.937e^-4	0.788	DOWNSTREAM CG34462 INTERGENIC
2R	5233196	2R_5233196_SNP [dm3] 2R_9345691_SNP [dm6]	G	A	2.948e^-4	0.788	SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
X	19540482	X_19540482_SNP [dm3] X_19646449_SNP [dm6]	T	C	2.954e^-4	0.788	UTR_3_PRIME Ranbp21 UPSTREAM Arp10 DOWNSTREAM Ranbp21	TF binding site mE1_TFBS_HSA
2R	12947310	2R_12947310_SNP [dm3] 2R_17059805_SNP [dm6]	A	G	2.955e^-4	0.788	UTR_3_PRIME CG8950 DOWNSTREAM CG8950 & 1 other
3R	25107837	3R_25107837_SNP [dm3] 3R_29282115_SNP [dm6]	C	A	2.958e^-4	0.788	INTERGENIC	regulatory region REDfly_CRMs
2R	4558503	2R_4558503_SNP [dm3] 2R_8670998_SNP [dm6]	T	C	2.961e^-4	0.788	INTRON Acsl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1873086	3L_1873086_SNP [dm3] 3L_1873086_SNP [dm6]	G	C	2.966e^-4	0.788	INTRON dre4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18725797	2L_18725797_SNP [dm3] 2L_18725797_SNP [dm6]	T	A	2.974e^-4	0.788	INTRON CG10348
X	22234476	X_22234476_SNP [dm3] X_22832640_SNP [dm6]	G	A	2.985e^-4	0.788	DOWNSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3563721	2L_3563721_SNP [dm3] 2L_3563721_SNP [dm6]	C	T	2.989e^-4	0.788	UPSTREAM CR44747 DOWNSTREAM CR44309 INTERGENIC	TF binding site mE1_TFBS_sens
2L	3834290	2L_3834290_SNP [dm3] 2L_3834290_SNP [dm6]	G	A	2.989e^-4	0.788	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	5251645	3L_5251645_SNP [dm3] 3L_5258545_SNP [dm6]	G	A	2.989e^-4	0.788	INTRON shep
3L	19046423	3L_19046423_SNP [dm3] 3L_19053323_SNP [dm6]	A	C	2.990e^-4	0.788	START_GAINED CG43407 UTR_5_PRIME CG43407 DOWNSTREAM CR44675
2R	13406262	2R_13406262_SNP [dm3] 2R_17518757_SNP [dm6]	A	C	2.991e^-4	0.788	SYNONYMOUS_CODING CG4866 UPSTREAM APC10 DOWNSTREAM Patronin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14816118	2R_14816118_SNP [dm3] 2R_18928613_SNP [dm6]	G	A	2.993e^-4	0.788	INTRON sano
2R	13255252	2R_13255252_SNP [dm3] 2R_17367747_SNP [dm6]	T	A	2.994e^-4	0.788	INTRON mbl	TF binding site BDTNP1_TFBS_dl
3R	15309557	3R_15309557_SNP [dm3] 3R_19483835_SNP [dm6]	T	C	3.005e^-4	0.788	INTRON Dys
2R	9816968	2R_9816968_SNP [dm3] 2R_13929463_SNP [dm6]	C	A	3.021e^-4	0.788	INTRON shot
X	17626946	X_17626946_SNP [dm3] X_17732913_SNP [dm6]	T	C	3.030e^-4	0.788	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11065117	3L_11065117_SNP [dm3] 3L_11072017_SNP [dm6]	A	G	3.031e^-4	0.788	NON_SYNONYMOUS_CODING Mocs1	TF binding site mE1_TFBS_sens
X	13499880	X_13499880_SNP [dm3] X_13605847_SNP [dm6]	C	T	3.038e^-4	0.788	UPSTREAM CG11178 DOWNSTREAM CR44654 INTRON CG11178	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2L	907103	2L_907103_SNP [dm3] 2L_907103_SNP [dm6]	A	G	3.038e^-4	0.788	INTERGENIC
3L	6005514	3L_6005514_SNP [dm3] 3L_6012414_SNP [dm6]	A	G	3.051e^-4	0.788	INTRON PVRAP
X	16222095	X_16222095_SNP [dm3] X_16328062_SNP [dm6]	A	G	3.055e^-4	0.788	UTR_3_PRIME CalpC DOWNSTREAM CG9919	TF binding site mE1_TFBS_cad
2R	1741212	2R_1741212_SNP [dm3] 2R_5853707_SNP [dm6]	A	G	3.059e^-4	0.788	SPLICE_SITE_REGION dpr12 INTRON dpr12
X	21126727	X_21126727_SNP [dm3] X_21255700_SNP [dm6]	C	T	3.062e^-4	0.788	INTRON CG32521
3R	9946906	3R_9946906_SNP [dm3] 3R_14121184_SNP [dm6]	G	A	3.064e^-4	0.788	SYNONYMOUS_CODING Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9414777	2L_9414777_SNP [dm3] 2L_9414777_SNP [dm6]	G	A	3.064e^-4	0.788	INTRON Shawl
3L	2409971	3L_2409971_SNP [dm3] 3L_2409971_SNP [dm6]	A	T	3.070e^-4	0.788	DOWNSTREAM CG45186 INTRON CG45186	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3L	12197990	3L_12197990_SNP [dm3] 3L_12204890_SNP [dm6]	T	A	3.071e^-4	0.788	NON_SYNONYMOUS_CODING CG5626 UPSTREAM Adk1
3R	6999207	3R_6999207_SNP [dm3] 3R_11173485_SNP [dm6]	T	A	3.072e^-4	0.788	UTR_3_PRIME Ugt86Dj UPSTREAM Ugt35a
2R	20044097	2R_20044097_SNP [dm3] 2R_24156574_SNP [dm6]	C	T	3.074e^-4	0.788	INTRON Dat	TF binding site mE1_TFBS_chinmo
X	10369817	X_10369817_SNP [dm3] X_10475784_SNP [dm6]	A	C	3.087e^-4	0.788	SYNONYMOUS_CODING CG2889	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1144573	2L_1144573_SNP [dm3] 2L_1144573_SNP [dm6]	T	A	3.088e^-4	0.788	INTRON MFS3
2L	6544566	2L_6544566_SNP [dm3] 2L_6544566_SNP [dm6]	A	T	3.092e^-4	0.788	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17385688	2R_17385688_SNP [dm3] 2R_21498183_SNP [dm6]	G	T	3.093e^-4	0.788	UPSTREAM Fkbp14 DOWNSTREAM TAF1C-like INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1873350	3L_1873350_SNP [dm3] 3L_1873350_SNP [dm6]	T	C	3.103e^-4	0.788	SYNONYMOUS_CODING dre4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18241289	3L_18241289_SNP [dm3] 3L_18248189_SNP [dm6]	A	T	3.103e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3934159	3L_3934159_SNP [dm3] 3L_3934159_SNP [dm6]	G	T	3.105e^-4	0.788	UPSTREAM Eip63F-1 & 1 other INTRON Eip63F-1
2L	9399578	2L_9399578_DEL [dm3] 2L_9399578_DEL [dm6]	CT	C	3.111e^-4	0.788	INTRON Shawl
X	3897594	X_3897594_DEL [dm3] X_4003561_DEL [dm6]	TGTGT	T	3.113e^-4	0.788	INTERGENIC
2R	20044167	2R_20044167_SNP [dm3] 2R_24156644_SNP [dm6]	T	G	3.113e^-4	0.788	INTRON Dat	TF binding site mE1_TFBS_chinmo
3R	13586400	3R_13586400_DEL [dm3] 3R_17760678_DEL [dm6]	AA	A	3.121e^-4	0.788	INTRON TyrR
3R	26717633	3R_26717633_SNP [dm3] 3R_30891911_SNP [dm6]	C	T	3.122e^-4	0.788	INTERGENIC
2L	18262220	2L_18262220_SNP [dm3] 2L_18262220_SNP [dm6]	T	C	3.125e^-4	0.788	INTRON CG42750 EXON CR44901
3L	12648682	3L_12648682_INS [dm3] 3L_12655582_INS [dm6]	A	AA	3.127e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16059683	3L_16059683_SNP [dm3] 3L_16066583_SNP [dm6]	T	A	3.129e^-4	0.788	INTRON Mbs
3L	12437365	3L_12437365_SNP [dm3] 3L_12444265_SNP [dm6]	G	A	3.131e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9951912	3R_9951912_SNP [dm3] 3R_14126190_SNP [dm6]	C	T	3.134e^-4	0.788	SYNONYMOUS_CODING RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	5618602	2L_5618602_SNP [dm3] 2L_5618602_SNP [dm6]	G	C	3.141e^-4	0.788	UPSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24706082	3R_24706082_SNP [dm3] 3R_28880360_SNP [dm6]	G	T	3.142e^-4	0.788	UPSTREAM CG14527 & 1 other INTRON CG33203	TF binding site mE1_TFBS_cad
3L	1836300	3L_1836300_SNP [dm3] 3L_1836300_SNP [dm6]	T	G	3.147e^-4	0.788	INTERGENIC
3R	14209970	3R_14209970_SNP [dm3] 3R_18384248_SNP [dm6]	A	G	3.156e^-4	0.788	INTRON CG14309
2R	11344954	2R_11344954_SNP [dm3] 2R_15457449_SNP [dm6]	G	C	3.165e^-4	0.788	INTRON CG43729
X	8874772	X_8874772_SNP [dm3] X_8980739_SNP [dm6]	A	T	3.168e^-4	0.788	INTRON rdgA & 1 other
2L	9383548	2L_9383548_INS [dm3] 2L_9383548_INS [dm6]	A	TTAATT	3.170e^-4	0.788	INTRON Shawl
2L	907838	2L_907838_SNP [dm3] 2L_907838_SNP [dm6]	C	G	3.170e^-4	0.788	INTERGENIC
2R	13512371	2R_13512371_SNP [dm3] 2R_17624866_SNP [dm6]	T	A	3.175e^-4	0.788	INTRON CG10936
2R	14784877	2R_14784877_SNP [dm3] 2R_18897372_SNP [dm6]	T	A	3.178e^-4	0.788	INTRON sano
3R	1788273	3R_1788273_SNP [dm3] 3R_5962551_SNP [dm6]	T	A	3.183e^-4	0.788	INTERGENIC
2L	13986342	2L_13986342_SNP [dm3] 2L_13986342_SNP [dm6]	G	A	3.183e^-4	0.788	INTRON rk
3L	4647151	3L_4647151_SNP [dm3] 3L_4647151_SNP [dm6]	A	C	3.185e^-4	0.788	INTRON axo
2L	13081752	2L_13081752_SNP [dm3] 2L_13081752_SNP [dm6]	C	T	3.189e^-4	0.788	INTERGENIC
3L	6110193	3L_6110193_SNP [dm3] 3L_6117093_SNP [dm6]	C	T	3.198e^-4	0.788	INTRON Ets65A
2L	8493138	2L_8493138_SNP [dm3] 2L_8493138_SNP [dm6]	C	T	3.200e^-4	0.788	INTRON Dh31
X	16103139	X_16103139_SNP [dm3] X_16209106_SNP [dm6]	T	C	3.201e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_sens
2L	3152542	2L_3152542_DEL [dm3] 2L_3152542_DEL [dm6]	AAATCGCAAACGCGACCCTC...	A	3.205e^-4	0.788	UTR_5_PRIME Mad INTRON Mad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7196364	3L_7196364_SNP [dm3] 3L_7203264_SNP [dm6]	C	G	3.227e^-4	0.788	INTERGENIC
3R	16389257	3R_16389257_SNP [dm3] 3R_20563535_SNP [dm6]	G	A	3.229e^-4	0.788	SYNONYMOUS_CODING CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19095554	X_19095554_SNP [dm3] X_19201521_SNP [dm6]	G	A	3.234e^-4	0.788	SYNONYMOUS_CODING CG7990 DOWNSTREAM Ulp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3335527	X_3335527_SNP [dm3] X_3441494_SNP [dm6]	A	G	3.236e^-4	0.788	INTRON CR44999 & 1 other
2L	6867886	2L_6867886_SNP [dm3] 2L_6867886_SNP [dm6]	A	T	3.240e^-4	0.788	INTRON Nha1
3L	6052819	3L_6052819_SNP [dm3] 3L_6059719_SNP [dm6]	A	T	3.244e^-4	0.788	START_GAINED CG6592 UTR_5_PRIME CG6592 DOWNSTREAM CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_inv
2R	2018106	2R_2018106_SNP [dm3] 2R_6130601_SNP [dm6]	T	C	3.251e^-4	0.788	INTRON EcR	TF binding site mE1_TFBS_sens
3R	14812736	3R_14812736_SNP [dm3] 3R_18987014_SNP [dm6]	T	C	3.255e^-4	0.788	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	12405727	X_12405727_SNP [dm3] X_12511694_SNP [dm6]	A	G	3.263e^-4	0.788	INTRON CG2556
3L	18216495	3L_18216495_SNP [dm3] 3L_18223395_SNP [dm6]	T	A	3.264e^-4	0.788	INTERGENIC
X	758679	X_758679_SNP [dm3] X_864646_SNP [dm6]	A	T	3.270e^-4	0.788	INTRON CG43867
2L	9401142	2L_9401142_SNP [dm3] 2L_9401142_SNP [dm6]	A	C	3.272e^-4	0.788	INTRON Shawl
3L	4650655	3L_4650655_SNP [dm3] 3L_4650655_SNP [dm6]	T	C	3.277e^-4	0.788	SYNONYMOUS_CODING axo DOWNSTREAM CG32238
X	18040999	X_18040999_SNP [dm3] X_18146966_SNP [dm6]	T	G	3.279e^-4	0.788	INTERGENIC
2R	16580045	2R_16580045_SNP [dm3] 2R_20692540_SNP [dm6]	A	C	3.282e^-4	0.788	UPSTREAM CG13438 DOWNSTREAM CR44659 INTERGENIC
3L	13987587	3L_13987587_SNP [dm3] 3L_13994487_SNP [dm6]	C	T	3.286e^-4	0.788	INTRON 26-29-p	TF binding site mE1_TFBS_inv
2L	2879614	2L_2879614_SNP [dm3] 2L_2879614_SNP [dm6]	C	T	3.292e^-4	0.788	SYNONYMOUS_CODING betaggt-II DOWNSTREAM CG31950	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Ubx
X	20920765	X_20920765_INS [dm3] X_21049738_INS [dm6]	C	CATC	3.300e^-4	0.788	DOWNSTREAM CG1518 & 1 other INTERGENIC
2L	18251210	2L_18251210_SNP [dm3] 2L_18251210_SNP [dm6]	T	C	3.302e^-4	0.788	UPSTREAM CG43406 INTRON CG42750
2L	1740055	2L_1740055_SNP [dm3] 2L_1740055_SNP [dm6]	G	A	3.313e^-4	0.788	INTRON CG17646
2L	11213090	2L_11213090_SNP [dm3] 2L_11213090_SNP [dm6]	T	C	3.314e^-4	0.788	INTRON ab
2L	4376521	2L_4376521_SNP [dm3] 2L_4376521_SNP [dm6]	A	T	3.315e^-4	0.788	INTRON Traf4	TF binding site mE1_TFBS_cad
2R	5988703	2R_5988703_SNP [dm3] 2R_10101198_SNP [dm6]	G	C	3.320e^-4	0.788	INTRON 14-3-3zeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	14941857	3R_14941857_SNP [dm3] 3R_19116135_SNP [dm6]	A	G	3.327e^-4	0.788	INTRON CG6040
3R	17543984	3R_17543984_SNP [dm3] 3R_21718262_SNP [dm6]	A	T	3.328e^-4	0.788	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
2R	12947390	2R_12947390_SNP [dm3] 2R_17059885_SNP [dm6]	G	C	3.334e^-4	0.788	UTR_3_PRIME CG8950 DOWNSTREAM fat-spondin
3R	12678776	3R_12678776_SNP [dm3] 3R_16853054_SNP [dm6]	G	A	3.334e^-4	0.788	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	14829445	2L_14829445_SNP [dm3] 2L_14829445_SNP [dm6]	A	G	3.337e^-4	0.788	INTERGENIC
2L	4739678	2L_4739678_SNP [dm3] 2L_4739678_SNP [dm6]	T	C	3.337e^-4	0.788	INTRON CG15630
3L	9012466	3L_9012466_SNP [dm3] 3L_9019366_SNP [dm6]	G	A	3.339e^-4	0.788	UPSTREAM Doc2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	19056929	3L_19056929_SNP [dm3] 3L_19063829_SNP [dm6]	T	A	3.339e^-4	0.788	INTRON CG6812	TF binding site BDTNP1_TFBS_hb mE1_TFBS_Trl
3L	19056934	3L_19056934_SNP [dm3] 3L_19063834_SNP [dm6]	C	T	3.339e^-4	0.788	INTRON CG6812	TF binding site BDTNP1_TFBS_hb mE1_TFBS_Trl
2R	19610569	2R_19610569_SNP [dm3] 2R_23723046_SNP [dm6]	A	G	3.345e^-4	0.788	INTRON Sesn
2R	17565832	2R_17565832_SNP [dm3] 2R_21678327_SNP [dm6]	C	G	3.351e^-4	0.788	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10717895	3L_10717895_SNP [dm3] 3L_10724795_SNP [dm6]	C	A	3.356e^-4	0.788	INTERGENIC
2L	9595710	2L_9595710_INS [dm3] 2L_9595710_INS [dm6]	G	GAAATGGAAAG...	3.358e^-4	0.788	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19610821	2R_19610821_SNP [dm3] 2R_23723298_SNP [dm6]	T	G	3.366e^-4	0.788	INTRON Sesn
2L	7195885	2L_7195885_SNP [dm3] 2L_7195885_SNP [dm6]	C	T	3.368e^-4	0.788	SYNONYMOUS_CODING CG4502
X	8719259	X_8719259_INS [dm3] X_8825226_INS [dm6]	A	GC	3.368e^-4	0.788	INTERGENIC
2L	8144437	2L_8144437_SNP [dm3] 2L_8144437_SNP [dm6]	T	A	3.369e^-4	0.788	UTR_3_PRIME CG42763 UPSTREAM CG42762 INTRON CG8552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	16950479	X_16950479_SNP [dm3] X_17056446_SNP [dm6]	A	C	3.370e^-4	0.788	INTRON CG45002
2R	12947182	2R_12947182_SNP [dm3] 2R_17059677_SNP [dm6]	C	A	3.371e^-4	0.788	UTR_3_PRIME CG8950 DOWNSTREAM CG8950 & 1 other
2L	10637038	2L_10637038_SNP [dm3] 2L_10637038_SNP [dm6]	T	C	3.372e^-4	0.788	INTRON CG7329
2R	17385344	2R_17385344_DEL [dm3] 2R_21497839_DEL [dm6]	TAAT	T	3.375e^-4	0.788	UTR_5_PRIME Fkbp14 UPSTREAM Fkbp14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	5406843	2R_5406843_SNP [dm3] 2R_9519338_SNP [dm6]	A	T	3.379e^-4	0.788	INTRON brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5717398	3L_5717398_SNP [dm3] 3L_5724298_SNP [dm6]	A	G	3.388e^-4	0.788	INTRON sif
2L	18725751	2L_18725751_SNP [dm3] 2L_18725751_SNP [dm6]	T	A	3.390e^-4	0.788	INTRON CG10348
2L	1253246	2L_1253246_SNP [dm3] 2L_1253246_SNP [dm6]	C	T	3.391e^-4	0.788	INTERGENIC
2L	9406892	2L_9406892_SNP [dm3] 2L_9406892_SNP [dm6]	A	C	3.401e^-4	0.788	INTRON Shawl
2L	14487950	2L_14487950_SNP [dm3] 2L_14487950_SNP [dm6]	G	C	3.403e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19282831	2R_19282831_SNP [dm3] 2R_23395308_SNP [dm6]	T	A	3.403e^-4	0.788	UTR_5_PRIME CG3530 INTRON CG3530	TF binding site mE1_TFBS_Trl
3R	9779139	3R_9779139_SNP [dm3] 3R_13953417_SNP [dm6]	T	C	3.413e^-4	0.788	INTERGENIC
2L	10119973	2L_10119973_SNP [dm3] 2L_10119973_SNP [dm6]	C	G	3.415e^-4	0.788	INTRON CG44153 & 1 other
2R	13249206	2R_13249206_SNP [dm3] 2R_17361701_SNP [dm6]	A	T	3.423e^-4	0.788	DOWNSTREAM mbl INTRON mbl
2R	1574639	2R_1574639_DEL [dm3] 2R_5687134_DEL [dm6]	CGT	A	3.429e^-4	0.788	INTRON scaf
2L	919047	2L_919047_SNP [dm3] 2L_919047_SNP [dm6]	A	G	3.429e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2396918	2L_2396918_SNP [dm3] 2L_2396918_SNP [dm6]	G	A	3.431e^-4	0.788	INTRON VGlut
3L	19056224	3L_19056224_SNP [dm3] 3L_19063124_SNP [dm6]	T	C	3.433e^-4	0.788	UPSTREAM CG6812 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6145519	2L_6145519_SNP [dm3] 2L_6145519_SNP [dm6]	T	C	3.436e^-4	0.788	DOWNSTREAM CG13991 INTERGENIC
3L	6109697	3L_6109697_DEL [dm3] 3L_6116597_DEL [dm6]	CC	C	3.436e^-4	0.788	INTRON Ets65A	TF binding site mE1_TFBS_Kr
3R	14630488	3R_14630488_SNP [dm3] 3R_18804766_SNP [dm6]	G	A	3.446e^-4	0.788	UTR_3_PRIME CG18208
X	7510721	X_7510721_SNP [dm3] X_7616688_SNP [dm6]	A	C	3.448e^-4	0.788	INTRON ct	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	14155694	X_14155694_SNP [dm3] X_14261661_SNP [dm6]	G	C	3.450e^-4	0.788	NON_SYNONYMOUS_CODING CG1461
3L	8449209	3L_8449209_DEL [dm3] 3L_8456109_DEL [dm6]	AGGAGGT	A	3.452e^-4	0.788	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19138241	2L_19138241_SNP [dm3] 2L_19138241_SNP [dm6]	G	A	3.462e^-4	0.788	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14212960	3R_14212960_SNP [dm3] 3R_18387238_SNP [dm6]	A	C	3.466e^-4	0.788	DOWNSTREAM cona INTRON Vha100-4	TF binding site mE1_TFBS_cad
2R	11966778	2R_11966778_SNP [dm3] 2R_16079273_SNP [dm6]	G	C	3.469e^-4	0.788	UPSTREAM CR43415 INTERGENIC
2L	16283457	2L_16283457_DEL [dm3] 2L_16283457_DEL [dm6]	GG	G	3.476e^-4	0.788	INTRON crp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
X	20920405	X_20920405_SNP [dm3] X_21049378_SNP [dm6]	A	T	3.479e^-4	0.788	DOWNSTREAM CG1518 & 1 other INTERGENIC
3L	19056923	3L_19056923_DEL [dm3] 3L_19063823_DEL [dm6]	TTTTG	T	3.481e^-4	0.788	INTRON CG6812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Trl
3L	19056933	3L_19056933_SNP [dm3] 3L_19063833_SNP [dm6]	T	A	3.481e^-4	0.788	INTRON CG6812	TF binding site BDTNP1_TFBS_hb mE1_TFBS_Trl
3L	19056940	3L_19056940_DEL [dm3] 3L_19063840_DEL [dm6]	TTATGC	A	3.481e^-4	0.788	INTRON CG6812	TF binding site BDTNP1_TFBS_hb mE1_TFBS_Trl
3L	19056949	3L_19056949_SNP [dm3] 3L_19063849_SNP [dm6]	T	A	3.481e^-4	0.788	INTRON CG6812	TF binding site BDTNP1_TFBS_hb mE1_TFBS_Trl
X	18040097	X_18040097_SNP [dm3] X_18146064_SNP [dm6]	T	C	3.483e^-4	0.788	INTERGENIC
2R	5233142	2R_5233142_SNP [dm3] 2R_9345637_SNP [dm6]	A	T	3.486e^-4	0.788	SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
3L	13383490	3L_13383490_SNP [dm3] 3L_13390390_SNP [dm6]	A	G	3.490e^-4	0.788	UPSTREAM Poc1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6592960	3L_6592960_SNP [dm3] 3L_6599860_SNP [dm6]	G	A	3.492e^-4	0.788	SYNONYMOUS_CODING ndl	TF binding site mE1_TFBS_cad
2R	11664906	2R_11664906_SNP [dm3] 2R_15777401_SNP [dm6]	C	T	3.500e^-4	0.788	INTRON Zasp52
3L	18951412	3L_18951412_SNP [dm3] 3L_18958312_SNP [dm6]	T	G	3.501e^-4	0.788	INTERGENIC
3L	15848710	3L_15848710_SNP [dm3] 3L_15855610_SNP [dm6]	C	T	3.505e^-4	0.788	INTRON pHCl
2L	12225412	2L_12225412_SNP [dm3] 2L_12225412_SNP [dm6]	T	C	3.507e^-4	0.788	INTRON aret
3R	7520381	3R_7520381_SNP [dm3] 3R_11694659_SNP [dm6]	T	C	3.509e^-4	0.788	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	21126684	X_21126684_SNP [dm3] X_21255657_SNP [dm6]	A	G	3.513e^-4	0.788	INTRON CG32521
X	5761159	X_5761159_SNP [dm3] X_5867126_SNP [dm6]	G	A	3.516e^-4	0.788	INTERGENIC
3L	717493	3L_717493_SNP [dm3] 3L_717493_SNP [dm6]	C	A	3.523e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	5554368	3R_5554368_SNP [dm3] 3R_9728646_SNP [dm6]	A	T	3.527e^-4	0.788	INTRON FoxP	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5554371	3R_5554371_SNP [dm3] 3R_9728649_SNP [dm6]	A	G	3.527e^-4	0.788	INTRON FoxP	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15410503	2R_15410503_SNP [dm3] 2R_19522998_SNP [dm6]	T	A	3.533e^-4	0.788	UTR_3_PRIME sm DOWNSTREAM sm
2L	15948269	2L_15948269_SNP [dm3] 2L_15948269_SNP [dm6]	G	A	3.539e^-4	0.788	INTRON beat-Ib
3L	13139745	3L_13139745_SNP [dm3] 3L_13146645_SNP [dm6]	A	T	3.543e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_inv
X	10130706	X_10130706_SNP [dm3] X_10236673_SNP [dm6]	T	C	3.553e^-4	0.788	UTR_3_PRIME Hk
2R	18930044	2R_18930044_SNP [dm3] 2R_23042521_SNP [dm6]	C	T	3.555e^-4	0.788	UTR_5_PRIME CG42741 INTRON twi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13452437	3R_13452437_SNP [dm3] 3R_17626715_SNP [dm6]	T	A	3.556e^-4	0.788	UPSTREAM CG14325 DOWNSTREAM AttD INTERGENIC
2R	13915193	2R_13915193_SNP [dm3] 2R_18027688_SNP [dm6]	A	G	3.557e^-4	0.788	INTERGENIC
X	13624015	X_13624015_SNP [dm3] X_13729982_SNP [dm6]	C	T	3.572e^-4	0.788	SYNONYMOUS_CODING g	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13948546	2R_13948546_DEL [dm3] 2R_18061041_DEL [dm6]	AAAA	TCT	3.575e^-4	0.788	INTERGENIC
3R	5464955	3R_5464955_SNP [dm3] 3R_9639233_SNP [dm6]	A	G	3.576e^-4	0.788	INTRON Dh44	TF binding site BDTNP1_TFBS_twi
2L	1105243	2L_1105243_SNP [dm3] 2L_1105243_SNP [dm6]	C	G	3.576e^-4	0.788	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19508265	2L_19508265_DEL [dm3] 2L_19508265_DEL [dm6]	CC	C	3.587e^-4	0.788	SPLICE_SITE_ACCEPTOR CG10188 UTR_5_PRIME CG10188 DOWNSTREAM CG10186 INTRON CG10188	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5858692	2L_5858692_SNP [dm3] 2L_5858692_SNP [dm6]	A	T	3.587e^-4	0.788	INTERGENIC
2R	8773266	2R_8773266_SNP [dm3] 2R_12885761_SNP [dm6]	G	A	3.590e^-4	0.788	INTRON vg	TF binding site BDTNP1_TFBS_dl
3L	11840347	3L_11840347_SNP [dm3] 3L_11847247_SNP [dm6]	T	A	3.596e^-4	0.788	DOWNSTREAM CG12521 INTERGENIC
2R	12233325	2R_12233325_SNP [dm3] 2R_16345820_SNP [dm6]	A	C	3.598e^-4	0.788	UTR_3_PRIME Nup62 DOWNSTREAM wcd	TF binding site mE1_TFBS_cad
3R	13623250	3R_13623250_SNP [dm3] 3R_17797528_SNP [dm6]	G	A	3.600e^-4	0.788	SYNONYMOUS_CODING CG7379	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
X	2121611	X_2121611_SNP [dm3] X_2227578_SNP [dm6]	A	G	3.603e^-4	0.788	SYNONYMOUS_CODING pcx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10712014	2R_10712014_SNP [dm3] 2R_14824509_SNP [dm6]	A	G	3.605e^-4	0.788	UPSTREAM CR45329 INTERGENIC
2L	14487879	2L_14487879_SNP [dm3] 2L_14487879_SNP [dm6]	C	T	3.607e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16580027	2R_16580027_SNP [dm3] 2R_20692522_SNP [dm6]	G	C	3.608e^-4	0.788	UPSTREAM CG13438 DOWNSTREAM CR44659 INTERGENIC
X	14217721	X_14217721_SNP [dm3] X_14323688_SNP [dm6]	T	C	3.609e^-4	0.788	INTRON dpr8
2L	8614061	2L_8614061_SNP [dm3] 2L_8614061_SNP [dm6]	A	G	3.615e^-4	0.788	INTRON Sema-1a
3R	21710760	3R_21710760_SNP [dm3] 3R_25885038_SNP [dm6]	G	T	3.618e^-4	0.788	INTRON SppL	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	20244653	2L_20244653_SNP [dm3] 2L_20244653_SNP [dm6]	A	T	3.621e^-4	0.788	INTERGENIC
X	18706551	X_18706551_SNP [dm3] X_18812518_SNP [dm6]	C	G	3.632e^-4	0.788	UPSTREAM CG42450 DOWNSTREAM CG7058 INTERGENIC	transposable element FlyBase
2L	907215	2L_907215_SNP [dm3] 2L_907215_SNP [dm6]	A	G	3.637e^-4	0.788	INTERGENIC
3L	16494697	3L_16494697_SNP [dm3] 3L_16501597_SNP [dm6]	G	A	3.639e^-4	0.788	DOWNSTREAM CG43373 INTRON CG43373
X	18067664	X_18067664_DEL [dm3] X_18173631_DEL [dm6]	AAA	C	3.639e^-4	0.788	UTR_3_PRIME Frq1
3L	6052492	3L_6052492_SNP [dm3] 3L_6059392_SNP [dm6]	T	G	3.642e^-4	0.788	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3L	19056922	3L_19056922_SNP [dm3] 3L_19063822_SNP [dm6]	T	A	3.647e^-4	0.788	INTRON CG6812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Trl
2L	20762600	2L_20762600_SNP [dm3] 2L_20762600_SNP [dm6]	A	G	3.653e^-4	0.788	DOWNSTREAM dia INTRON dia	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5549497	2L_5549497_SNP [dm3] 2L_5549497_SNP [dm6]	C	G	3.653e^-4	0.788	UTR_3_PRIME Oscillin DOWNSTREAM CG14014 & 1 other
3R	13484682	3R_13484682_SNP [dm3] 3R_17658960_SNP [dm6]	T	C	3.662e^-4	0.788	UPSTREAM tRNA:CR31575 INTRON CG14322
X	17627083	X_17627083_SNP [dm3] X_17733050_SNP [dm6]	G	T	3.664e^-4	0.788	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16819247	2R_16819247_SNP [dm3] 2R_20931742_SNP [dm6]	C	A	3.671e^-4	0.788	INTRON Rx
2R	17357151	2R_17357151_SNP [dm3] 2R_21469646_SNP [dm6]	A	C	3.673e^-4	0.788	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14812536	3R_14812536_SNP [dm3] 3R_18986814_SNP [dm6]	T	C	3.675e^-4	0.788	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10718313	2L_10718313_SNP [dm3] 2L_10718313_SNP [dm6]	A	T	3.677e^-4	0.788	INTERGENIC
3L	14734346	3L_14734346_DEL [dm3] 3L_14741246_DEL [dm6]	AA	A	3.677e^-4	0.788	INTRON ome
2R	12947322	2R_12947322_SNP [dm3] 2R_17059817_SNP [dm6]	C	T	3.682e^-4	0.788	UTR_3_PRIME CG8950 DOWNSTREAM CG8950 & 1 other
3R	18854081	3R_18854081_SNP [dm3] 3R_23028359_SNP [dm6]	A	G	3.683e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2501527	2L_2501527_SNP [dm3] 2L_2501527_SNP [dm6]	C	T	3.686e^-4	0.788	INTERGENIC
2L	8271061	2L_8271061_INS [dm3] 2L_8271061_INS [dm6]	T	TATAT	3.687e^-4	0.788	INTRON Btk29A
X	8416107	X_8416107_SNP [dm3] X_8522074_SNP [dm6]	T	C	3.687e^-4	0.788	INTRON Nrg
2L	11634213	2L_11634213_SNP [dm3] 2L_11634213_SNP [dm6]	A	G	3.696e^-4	0.788	INTERGENIC
3L	5717254	3L_5717254_SNP [dm3] 3L_5724154_SNP [dm6]	C	T	3.698e^-4	0.788	INTRON sif
3L	3096362	3L_3096362_SNP [dm3] 3L_3096362_SNP [dm6]	C	T	3.698e^-4	0.788	UPSTREAM tRNA:CR32287 & 1 other DOWNSTREAM tRNA:CR32288 & 2 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	7518846	3R_7518846_SNP [dm3] 3R_11693124_SNP [dm6]	T	A	3.699e^-4	0.788	DOWNSTREAM Fer3 INTERGENIC
X	11217929	X_11217929_SNP [dm3] X_11323896_SNP [dm6]	G	C	3.703e^-4	0.788	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
X	3625608	X_3625608_SNP [dm3] X_3731575_SNP [dm6]	A	G	3.706e^-4	0.788	INTRON tlk
2R	18657897	2R_18657897_SNP [dm3] 2R_22770392_SNP [dm6]	C	A	3.707e^-4	0.788	INTRON CG42260
X	18706581	X_18706581_SNP [dm3] X_18812548_SNP [dm6]	C	T	3.707e^-4	0.788	UPSTREAM CG42450 DOWNSTREAM CG7058 INTERGENIC	transposable element FlyBase
2R	20121433	2R_20121433_SNP [dm3] 2R_24233910_SNP [dm6]	C	T	3.709e^-4	0.788	INTERGENIC
X	2534758	X_2534758_SNP [dm3] X_2640725_SNP [dm6]	G	T	3.717e^-4	0.788	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21747211	3R_21747211_SNP [dm3] 3R_25921489_SNP [dm6]	G	C	3.721e^-4	0.788	NON_SYNONYMOUS_CODING CG14546 DOWNSTREAM CG42235
2L	9404354	2L_9404354_SNP [dm3] 2L_9404354_SNP [dm6]	T	A	3.723e^-4	0.788	INTRON Shawl
2L	20749370	2L_20749370_SNP [dm3] 2L_20749370_SNP [dm6]	A	G	3.728e^-4	0.788	UTR_3_PRIME Fs_2_Ket
2L	1790419	2L_1790419_SNP [dm3] 2L_1790419_SNP [dm6]	A	T	3.743e^-4	0.788	UPSTREAM Gr22d DOWNSTREAM Gr22c INTERGENIC
2L	7911739	2L_7911739_SNP [dm3] 2L_7911739_SNP [dm6]	C	A	3.753e^-4	0.788	INTRON Snoo
3R	21594539	3R_21594539_SNP [dm3] 3R_25768817_SNP [dm6]	T	C	3.761e^-4	0.788	INTERGENIC
2R	14939772	2R_14939772_SNP [dm3] 2R_19052267_SNP [dm6]	T	C	3.761e^-4	0.788	INTERGENIC
2R	16235282	2R_16235282_SNP [dm3] 2R_20347777_SNP [dm6]	A	G	3.765e^-4	0.788	DOWNSTREAM CG16741 INTERGENIC
2R	17653000	2R_17653000_SNP [dm3] 2R_21765495_SNP [dm6]	T	C	3.770e^-4	0.788	UTR_5_PRIME CG30395 UPSTREAM CR43984 DOWNSTREAM CG43982
2L	1335354	2L_1335354_SNP [dm3] 2L_1335354_SNP [dm6]	C	G	3.776e^-4	0.788	UTR_3_PRIME CG5440 DOWNSTREAM CG5440
2R	13866451	2R_13866451_SNP [dm3] 2R_17978946_SNP [dm6]	A	G	3.779e^-4	0.788	INTRON dpr13
3L	10217141	3L_10217141_SNP [dm3] 3L_10224041_SNP [dm6]	C	A	3.796e^-4	0.788	NON_SYNONYMOUS_CODING scramb1 UPSTREAM scramb1
2L	8539346	2L_8539346_DEL [dm3] 2L_8539346_DEL [dm6]	AGTAA	A	3.801e^-4	0.788	INTRON CG17834
2L	7630469	2L_7630469_SNP [dm3] 2L_7630469_SNP [dm6]	T	A	3.807e^-4	0.788	INTERGENIC
3R	13976439	3R_13976439_SNP [dm3] 3R_18150717_SNP [dm6]	G	A	3.813e^-4	0.788	INTERGENIC
2R	13255171	2R_13255171_SNP [dm3] 2R_17367666_SNP [dm6]	T	A	3.816e^-4	0.788	INTRON mbl	TF binding site BDTNP1_TFBS_dl
3R	19253427	3R_19253427_DEL [dm3] 3R_23427705_DEL [dm6]	AATT	A	3.835e^-4	0.788	INTRON CG4374
2L	1104919	2L_1104919_SNP [dm3] 2L_1104919_SNP [dm6]	A	T	3.840e^-4	0.788	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12927041	X_12927041_SNP [dm3] X_13033008_SNP [dm6]	A	T	3.842e^-4	0.788	INTRON rad	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6155106	2R_6155106_SNP [dm3] 2R_10267601_SNP [dm6]	C	T	3.853e^-4	0.788	INTRON CG12910
3R	13094958	3R_13094958_SNP [dm3] 3R_17269236_SNP [dm6]	C	T	3.853e^-4	0.788	INTERGENIC
2R	13896341	2R_13896341_SNP [dm3] 2R_18008836_SNP [dm6]	T	C	3.854e^-4	0.788	UPSTREAM dpr13 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9027256	3L_9027256_SNP [dm3] 3L_9034156_SNP [dm6]	G	T	3.861e^-4	0.788	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2L	19029728	2L_19029728_SNP [dm3] 2L_19029728_SNP [dm6]	G	A	3.861e^-4	0.788	SYNONYMOUS_CODING Side	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13658257	2R_13658257_SNP [dm3] 2R_17770752_SNP [dm6]	T	A	3.868e^-4	0.788	NON_SYNONYMOUS_CODING CG6362 UPSTREAM CG18635	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18706587	X_18706587_DEL [dm3] X_18812554_DEL [dm6]	TGTAT	T	3.870e^-4	0.788	UPSTREAM CG42450 DOWNSTREAM CG7058 INTERGENIC	transposable element FlyBase
2R	12947439	2R_12947439_INS [dm3] 2R_17059934_INS [dm6]	A	ATGAA	3.874e^-4	0.788	UTR_3_PRIME CG8950 DOWNSTREAM fat-spondin
3L	6760804	3L_6760804_SNP [dm3] 3L_6767704_SNP [dm6]	G	A	3.881e^-4	0.788	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	13937176	2R_13937176_SNP [dm3] 2R_18049671_SNP [dm6]	A	G	3.893e^-4	0.788	UTR_5_PRIME CG14495 DOWNSTREAM CG34005 & 1 other
2R	6153065	2R_6153065_DEL [dm3] 2R_10265560_DEL [dm6]	GT	A	3.895e^-4	0.788	UPSTREAM CG12910 INTRON CG12910	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9557215	2L_9557215_SNP [dm3] 2L_9557215_SNP [dm6]	G	A	3.896e^-4	0.788	INTRON jp
X	3461284	X_3461284_DEL [dm3] X_3567251_DEL [dm6]	GCAACAT	TA	3.911e^-4	0.788	INTRON CG32791 & 1 other
3L	4020726	3L_4020726_SNP [dm3] 3L_4020726_SNP [dm6]	C	T	3.925e^-4	0.788	SYNONYMOUS_CODING fd64A UPSTREAM Mul1	TF binding site mE1_TFBS_cad
2R	7456156	2R_7456156_SNP [dm3] 2R_11568651_SNP [dm6]	T	G	3.927e^-4	0.788	INTERGENIC
2L	4371753	2L_4371753_INS [dm3] 2L_4371753_INS [dm6]	G	GCG	3.930e^-4	0.788	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	2269394	3L_2269394_SNP [dm3] 3L_2269394_SNP [dm6]	C	T	3.937e^-4	0.788	SYNONYMOUS_CODING CG32302 DOWNSTREAM obst-I & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	2879208	2L_2879208_SNP [dm3] 2L_2879208_SNP [dm6]	G	T	3.938e^-4	0.788	UTR_5_PRIME betaggt-II UPSTREAM Prx6005 DOWNSTREAM CG31950	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9383520	2L_9383520_SNP [dm3] 2L_9383520_SNP [dm6]	G	C	3.956e^-4	0.788	INTRON Shawl
X	5403237	X_5403237_SNP [dm3] X_5509204_SNP [dm6]	G	A	3.956e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	565348	2L_565348_SNP [dm3] 2L_565348_SNP [dm6]	T	C	3.964e^-4	0.788	SYNONYMOUS_CODING CG2794	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9946984	3R_9946984_SNP [dm3] 3R_14121262_SNP [dm6]	T	A	3.966e^-4	0.788	NON_SYNONYMOUS_CODING Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18524107	3R_18524107_SNP [dm3] 3R_22698385_SNP [dm6]	C	T	3.968e^-4	0.788	UTR_5_PRIME Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5465956	2L_5465956_SNP [dm3] 2L_5465956_SNP [dm6]	A	C	3.968e^-4	0.788	SYNONYMOUS_CODING mid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6051493	3L_6051493_SNP [dm3] 3L_6058393_SNP [dm6]	A	T	3.977e^-4	0.788	UPSTREAM CR45441 INTERGENIC
2R	13255915	2R_13255915_SNP [dm3] 2R_17368410_SNP [dm6]	T	A	3.979e^-4	0.788	INTRON mbl	TF binding site BDTNP1_TFBS_dl
3R	15047944	3R_15047944_SNP [dm3] 3R_19222222_SNP [dm6]	C	A	3.980e^-4	0.788	INTRON vib
3L	19056938	3L_19056938_SNP [dm3] 3L_19063838_SNP [dm6]	T	A	3.982e^-4	0.788	INTRON CG6812	TF binding site BDTNP1_TFBS_hb mE1_TFBS_Trl
X	18706566	X_18706566_SNP [dm3] X_18812533_SNP [dm6]	T	C	3.984e^-4	0.788	UPSTREAM CG42450 DOWNSTREAM CG7058 INTERGENIC	transposable element FlyBase
3L	10705302	3L_10705302_SNP [dm3] 3L_10712202_SNP [dm6]	T	C	3.985e^-4	0.788	INTERGENIC
3L	9583513	3L_9583513_SNP [dm3] 3L_9590413_SNP [dm6]	C	T	3.987e^-4	0.788	INTRON CG42673
2R	16580068	2R_16580068_SNP [dm3] 2R_20692563_SNP [dm6]	G	C	3.994e^-4	0.788	UPSTREAM CG13438 DOWNSTREAM CR44659 INTERGENIC
2L	10119977	2L_10119977_SNP [dm3] 2L_10119977_SNP [dm6]	C	A	3.994e^-4	0.788	INTRON CG44153 & 1 other
2L	9267909	2L_9267909_SNP [dm3] 2L_9267909_SNP [dm6]	A	C	4.001e^-4	0.788	INTRON Ggamma30A
3R	6652867	3R_6652867_SNP [dm3] 3R_10827145_SNP [dm6]	G	A	4.007e^-4	0.788	UTR_5_PRIME Cad86C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17627096	X_17627096_SNP [dm3] X_17733063_SNP [dm6]	T	C	4.015e^-4	0.788	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24033638	3R_24033638_SNP [dm3] 3R_28207916_SNP [dm6]	C	T	4.015e^-4	0.788	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18030550	3R_18030550_SNP [dm3] 3R_22204828_SNP [dm6]	C	G	4.015e^-4	0.788	INTRON SKIP & 1 other
X	15574461	X_15574461_SNP [dm3] X_15680428_SNP [dm6]	A	G	4.016e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17115437	2R_17115437_SNP [dm3] 2R_21227932_SNP [dm6]	T	A	4.017e^-4	0.788	INTRON ASPP
X	16865761	X_16865761_SNP [dm3] X_16971728_SNP [dm6]	A	T	4.021e^-4	0.788	UTR_3_PRIME CG45002
3R	6661407	3R_6661407_SNP [dm3] 3R_10835685_SNP [dm6]	G	A	4.030e^-4	0.788	INTRON Cad86C
2R	4421167	2R_4421167_SNP [dm3] 2R_8533662_SNP [dm6]	A	C	4.038e^-4	0.788	INTERGENIC
2L	584974	2L_584974_SNP [dm3] 2L_584974_SNP [dm6]	A	G	4.041e^-4	0.788	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	9024761	3L_9024761_SNP [dm3] 3L_9031661_SNP [dm6]	G	C	4.042e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9024764	3L_9024764_SNP [dm3] 3L_9031664_SNP [dm6]	C	T	4.042e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	19430579	3R_19430579_SNP [dm3] 3R_23604857_SNP [dm6]	C	A	4.047e^-4	0.788	SYNONYMOUS_CODING CG10184 DOWNSTREAM CG31145	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11475788	2L_11475788_SNP [dm3] 2L_11475788_SNP [dm6]	G	A	4.050e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3L	19056962	3L_19056962_SNP [dm3] 3L_19063862_SNP [dm6]	A	C	4.051e^-4	0.788	INTRON CG6812	TF binding site BDTNP1_TFBS_hb
X	20926567	X_20926567_SNP [dm3] X_21055540_SNP [dm6]	A	T	4.053e^-4	0.788	INTRON bves	TF binding site mE1_TFBS_Trl
3R	26168412	3R_26168412_SNP [dm3] 3R_30342690_SNP [dm6]	A	C	4.053e^-4	0.788	INTRON hdc
2L	4051154	2L_4051154_SNP [dm3] 2L_4051154_SNP [dm6]	T	A	4.054e^-4	0.788	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13831157	2R_13831157_SNP [dm3] 2R_17943652_SNP [dm6]	C	T	4.058e^-4	0.788	INTERGENIC
2L	2853922	2L_2853922_SNP [dm3] 2L_2853922_SNP [dm6]	C	T	4.058e^-4	0.788	INTRON CG3104	TF binding site mE1_TFBS_cnc
3L	6110307	3L_6110307_SNP [dm3] 3L_6117207_SNP [dm6]	T	G	4.062e^-4	0.788	INTRON Ets65A
3R	6795192	3R_6795192_SNP [dm3] 3R_10969470_SNP [dm6]	G	A	4.070e^-4	0.788	UPSTREAM CR45561 INTERGENIC
2L	12225387	2L_12225387_SNP [dm3] 2L_12225387_SNP [dm6]	G	A	4.071e^-4	0.788	INTRON aret
3R	24706846	3R_24706846_SNP [dm3] 3R_28881124_SNP [dm6]	A	T	4.073e^-4	0.788	NON_SYNONYMOUS_CODING CG14527 INTRON CG33203
X	15535114	X_15535114_SNP [dm3] X_15641081_SNP [dm6]	T	A	4.080e^-4	0.788	DOWNSTREAM CR44893 INTERGENIC
2L	19780125	2L_19780125_SNP [dm3] 2L_19780125_SNP [dm6]	G	A	4.083e^-4	0.788	SYNONYMOUS_CODING CdGAPr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	553891	2L_553891_SNP [dm3] 2L_553891_SNP [dm6]	G	T	4.084e^-4	0.788	UTR_3_PRIME rempA UPSTREAM Ets21C
3L	6076924	3L_6076924_SNP [dm3] 3L_6083824_SNP [dm6]	T	C	4.090e^-4	0.788	INTRON CG13293	TF binding site BDTNP1_TFBS_dl
2R	19532064	2R_19532064_SNP [dm3] 2R_23644541_SNP [dm6]	T	C	4.100e^-4	0.788	INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7635318	2L_7635318_SNP [dm3] 2L_7635318_SNP [dm6]	A	G	4.108e^-4	0.788	UPSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
X	19231182	X_19231182_SNP [dm3] X_19337149_SNP [dm6]	G	A	4.109e^-4	0.788	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl
3L	10652743	3L_10652743_SNP [dm3] 3L_10659643_SNP [dm6]	A	T	4.110e^-4	0.788	UTR_5_PRIME CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	4598855	3R_4598855_SNP [dm3] 3R_8773133_SNP [dm6]	G	C	4.114e^-4	0.788	UPSTREAM CG34301 & 1 other INTERGENIC
2L	18246469	2L_18246469_SNP [dm3] 2L_18246469_SNP [dm6]	C	T	4.115e^-4	0.788	INTRON CG42750
2R	17567753	2R_17567753_SNP [dm3] 2R_21680248_SNP [dm6]	A	T	4.123e^-4	0.788	NON_SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6107550	2L_6107550_SNP [dm3] 2L_6107550_SNP [dm6]	G	T	4.124e^-4	0.788	INTRON stai
2R	18844227	2R_18844227_SNP [dm3] 2R_22956704_SNP [dm6]	G	A	4.126e^-4	0.788	DOWNSTREAM CR44780 INTERGENIC	TF binding site mE1_TFBS_cad
3L	9831358	3L_9831358_SNP [dm3] 3L_9838258_SNP [dm6]	A	G	4.130e^-4	0.788	SYNONYMOUS_CODING Cdk8 DOWNSTREAM RasGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	18988147	3R_18988147_SNP [dm3] 3R_23162425_SNP [dm6]	A	C	4.131e^-4	0.788	INTERGENIC
3R	11121004	3R_11121004_SNP [dm3] 3R_15295282_SNP [dm6]	C	A	4.146e^-4	0.788	NON_SYNONYMOUS_CODING Tm1 INTRON Tm1
2R	14159305	2R_14159305_INS [dm3] 2R_18271800_INS [dm6]	A	ATA	4.152e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	5717279	3L_5717279_SNP [dm3] 3L_5724179_SNP [dm6]	T	C	4.156e^-4	0.788	INTRON sif
2R	16163913	2R_16163913_SNP [dm3] 2R_20276408_SNP [dm6]	C	A	4.157e^-4	0.788	DOWNSTREAM CG11788 INTRON CG9143
X	21125691	X_21125691_SNP [dm3] X_21254664_SNP [dm6]	T	C	4.160e^-4	0.788	INTRON CG32521
2L	10146538	2L_10146538_DEL [dm3] 2L_10146538_DEL [dm6]	TTGGCAAT	T	4.165e^-4	0.788	UTR_5_PRIME CG4839 INTRON CG44153 & 1 other
3R	9946986	3R_9946986_SNP [dm3] 3R_14121264_SNP [dm6]	A	G	4.169e^-4	0.788	SYNONYMOUS_CODING Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10306392	3R_10306392_SNP [dm3] 3R_14480670_SNP [dm6]	C	T	4.172e^-4	0.788	UTR_5_PRIME cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	755118	X_755118_SNP [dm3] X_861085_SNP [dm6]	A	T	4.175e^-4	0.788	INTRON CG43867
2R	16171485	2R_16171485_SNP [dm3] 2R_20283980_SNP [dm6]	T	C	4.176e^-4	0.788	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10509019	3R_10509019_SNP [dm3] 3R_14683297_SNP [dm6]	A	G	4.191e^-4	0.788	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3L	16751566	3L_16751566_SNP [dm3] 3L_16758466_SNP [dm6]	T	C	4.210e^-4	0.788	INTERGENIC
3L	16386254	3L_16386254_SNP [dm3] 3L_16393154_SNP [dm6]	A	T	4.221e^-4	0.788	INTRON CG44836	TF binding site mE1_TFBS_HSA
3R	21734825	3R_21734825_SNP [dm3] 3R_25909103_SNP [dm6]	C	T	4.226e^-4	0.788	INTRON CG42235
3R	13413619	3R_13413619_SNP [dm3] 3R_17587897_SNP [dm6]	T	C	4.227e^-4	0.788	INTERGENIC
2R	16580057	2R_16580057_SNP [dm3] 2R_20692552_SNP [dm6]	T	C	4.228e^-4	0.788	UPSTREAM CG13438 DOWNSTREAM CR44659 INTERGENIC
3R	13206164	3R_13206164_DEL [dm3] 3R_17380442_DEL [dm6]	TCGGTTT	T	4.234e^-4	0.788	INTRON Brf & 1 other
3L	16753611	3L_16753611_SNP [dm3] 3L_16760511_SNP [dm6]	A	G	4.237e^-4	0.788	INTERGENIC
2R	8444884	2R_8444884_SNP [dm3] 2R_12557379_SNP [dm6]	G	A	4.239e^-4	0.788	NON_SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3195064	X_3195064_SNP [dm3] X_3301031_SNP [dm6]	C	A	4.242e^-4	0.788	INTRON dnc
3L	15506206	3L_15506206_SNP [dm3] 3L_15513106_SNP [dm6]	C	A	4.245e^-4	0.788	UTR_3_PRIME Eip71CD	TF binding site mE1_TFBS_cad
2L	4291012	2L_4291012_DEL [dm3] 2L_4291012_DEL [dm6]	CGGCCCATTAC...	C	4.262e^-4	0.788	INTRON tutl
3R	6793334	3R_6793334_SNP [dm3] 3R_10967612_SNP [dm6]	T	C	4.263e^-4	0.788	INTERGENIC
2L	553896	2L_553896_SNP [dm3] 2L_553896_SNP [dm6]	G	A	4.264e^-4	0.788	UTR_3_PRIME rempA UPSTREAM Ets21C
3R	21747207	3R_21747207_SNP [dm3] 3R_25921485_SNP [dm6]	A	T	4.267e^-4	0.788	SYNONYMOUS_CODING CG14546 DOWNSTREAM CG42235
X	758445	X_758445_SNP [dm3] X_864412_SNP [dm6]	T	A	4.276e^-4	0.788	INTRON CG43867
2L	2879148	2L_2879148_SNP [dm3] 2L_2879148_SNP [dm6]	T	C	4.279e^-4	0.788	UTR_5_PRIME betaggt-II UPSTREAM Prx6005 DOWNSTREAM CG31950	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
X	8154179	X_8154179_SNP [dm3] X_8260146_SNP [dm6]	T	C	4.286e^-4	0.788	INTRON CG1632
2L	5373799	2L_5373799_SNP [dm3] 2L_5373799_SNP [dm6]	G	A	4.290e^-4	0.788	INTERGENIC

By genomic position
Variant impact
Gene name

posteriorwidth phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results