DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.025e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.01239
In_3R_P	0.02435

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.886	0.0487
In_3R_P	8.5755	0.0137

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2017 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	6052264	3L_6052264_SNP [dm3] 3L_6059164_SNP [dm6]	C	A	1.191e^-7	0.097	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	6051581	3L_6051581_SNP [dm3] 3L_6058481_SNP [dm6]	A	C	1.725e^-7	0.097	UPSTREAM CR45441 INTERGENIC
3L	6052817	3L_6052817_SNP [dm3] 3L_6059717_SNP [dm6]	T	A	1.735e^-7	0.097	UTR_5_PRIME CG6592 DOWNSTREAM CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_inv
3L	6051448	3L_6051448_SNP [dm3] 3L_6058348_SNP [dm6]	G	A	2.159e^-7	0.097	UPSTREAM CR45441 INTERGENIC
3L	6052786	3L_6052786_SNP [dm3] 3L_6059686_SNP [dm6]	A	G	3.182e^-7	0.097	UTR_5_PRIME CG6592 DOWNSTREAM CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_run
3L	6051559	3L_6051559_SNP [dm3] 3L_6058459_SNP [dm6]	C	T	3.902e^-7	0.097	UPSTREAM CR45441 INTERGENIC
3L	6052787	3L_6052787_SNP [dm3] 3L_6059687_SNP [dm6]	T	A	4.128e^-7	0.097	UTR_5_PRIME CG6592 DOWNSTREAM CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_run
3L	6052223	3L_6052223_DEL [dm3] 3L_6059123_DEL [dm6]	TT	T	4.182e^-7	0.097	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2L	20762600	2L_20762600_SNP [dm3] 2L_20762600_SNP [dm6]	A	G	4.927e^-7	0.097	DOWNSTREAM dia INTRON dia	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6051392	3L_6051392_SNP [dm3] 3L_6058292_SNP [dm6]	T	C	5.260e^-7	0.097	UPSTREAM CR45441 INTERGENIC
3L	6052819	3L_6052819_SNP [dm3] 3L_6059719_SNP [dm6]	A	T	5.706e^-7	0.097	START_GAINED CG6592 UTR_5_PRIME CG6592 DOWNSTREAM CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_inv
3L	6051357	3L_6051357_SNP [dm3] 3L_6058257_SNP [dm6]	C	T	6.898e^-7	0.108	UPSTREAM CR45441 INTERGENIC
3L	6052241	3L_6052241_SNP [dm3] 3L_6059141_SNP [dm6]	C	T	9.484e^-7	0.137	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2L	9410908	2L_9410908_SNP [dm3] 2L_9410908_SNP [dm6]	C	A	1.041e^-6	0.139	INTRON Shawl
3L	6051362	3L_6051362_SNP [dm3] 3L_6058262_SNP [dm6]	G	A	1.302e^-6	0.163	UPSTREAM CR45441 INTERGENIC
2L	9413340	2L_9413340_SNP [dm3] 2L_9413340_SNP [dm6]	C	T	1.640e^-6	0.192	INTRON Shawl
3R	7186858	3R_7186858_SNP [dm3] 3R_11361136_SNP [dm6]	A	G	2.846e^-6	0.314	INTRON pros	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	9409920	2L_9409920_SNP [dm3] 2L_9409920_SNP [dm6]	A	T	3.741e^-6	0.39	INTRON Shawl
2L	9688870	2L_9688870_SNP [dm3] 2L_9688870_SNP [dm6]	C	A	3.991e^-6	0.394	INTRON Pka-C1
3R	21710760	3R_21710760_SNP [dm3] 3R_25885038_SNP [dm6]	G	T	4.805e^-6	0.424	INTRON SppL	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17575549	2R_17575549_SNP [dm3] 2R_21688044_SNP [dm6]	A	C	4.833e^-6	0.424	UTR_3_PRIME CG30285 UPSTREAM Tbp & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
X	12114932	X_12114932_DEL [dm3] X_12220899_DEL [dm6]	CC	C	4.971e^-6	0.424	INTRON Ten-a
3L	6051650	3L_6051650_SNP [dm3] 3L_6058550_SNP [dm6]	A	G	5.207e^-6	0.425	UPSTREAM CR45441 INTERGENIC
2L	9408943	2L_9408943_DEL [dm3] 2L_9408943_DEL [dm6]	TT	C	5.864e^-6	0.458	INTRON Shawl
2R	17575554	2R_17575554_SNP [dm3] 2R_21688049_SNP [dm6]	A	G	6.342e^-6	0.459	UTR_3_PRIME CG30285 UPSTREAM Tbp & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3L	6052802	3L_6052802_SNP [dm3] 3L_6059702_SNP [dm6]	T	G	6.368e^-6	0.459	UTR_5_PRIME CG6592 DOWNSTREAM CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_run
2R	17575553	2R_17575553_SNP [dm3] 2R_21688048_SNP [dm6]	G	A	7.026e^-6	0.486	UTR_3_PRIME CG30285 UPSTREAM Tbp & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2L	9411012	2L_9411012_SNP [dm3] 2L_9411012_SNP [dm6]	A	T	7.425e^-6	0.486	INTRON Shawl
2L	2878619	2L_2878619_SNP [dm3] 2L_2878619_SNP [dm6]	G	A	7.899e^-6	0.486	SYNONYMOUS_CODING CG31950 UPSTREAM betaggt-II & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	9188540	X_9188540_SNP [dm3] X_9294507_SNP [dm6]	T	A	8.051e^-6	0.486	INTRON lz	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13915193	2R_13915193_SNP [dm3] 2R_18027688_SNP [dm6]	A	G	8.072e^-6	0.486	INTERGENIC
2L	9411013	2L_9411013_SNP [dm3] 2L_9411013_SNP [dm6]	C	T	8.412e^-6	0.486	INTRON Shawl
2L	9414777	2L_9414777_SNP [dm3] 2L_9414777_SNP [dm6]	G	A	8.813e^-6	0.486	INTRON Shawl
X	8557806	X_8557806_SNP [dm3] X_8663773_SNP [dm6]	A	G	8.862e^-6	0.486	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	9746415	2R_9746415_DEL [dm3] 2R_13858910_DEL [dm6]	TC	T	9.077e^-6	0.486	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	4369909	3L_4369909_SNP [dm3] 3L_4369909_SNP [dm6]	T	C	9.842e^-6	0.491	SYNONYMOUS_CODING DopEcR
2R	17575558	2R_17575558_SNP [dm3] 2R_21688053_SNP [dm6]	A	G	9.868e^-6	0.491	UTR_3_PRIME CG30285 UPSTREAM Tbp & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3L	6050576	3L_6050576_SNP [dm3] 3L_6057476_SNP [dm6]	T	A	9.943e^-6	0.491	DOWNSTREAM tan INTERGENIC
2L	18916070	2L_18916070_DEL [dm3] 2L_18916070_DEL [dm6]	TCTCCGT	T	1.094e^-5	0.526	DOWNSTREAM ssp3 INTERGENIC
2L	9406873	2L_9406873_SNP [dm3] 2L_9406873_SNP [dm6]	A	T	1.156e^-5	0.542	INTRON Shawl
3L	6050266	3L_6050266_SNP [dm3] 3L_6057166_SNP [dm6]	A	G	1.219e^-5	0.551	DOWNSTREAM tan INTERGENIC
3L	9026764	3L_9026764_SNP [dm3] 3L_9033664_SNP [dm6]	A	G	1.236e^-5	0.551	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	6051503	3L_6051503_SNP [dm3] 3L_6058403_SNP [dm6]	C	A	1.316e^-5	0.551	UPSTREAM CR45441 INTERGENIC
3L	9026833	3L_9026833_SNP [dm3] 3L_9033733_SNP [dm6]	A	T	1.318e^-5	0.551	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	19035095	3L_19035095_SNP [dm3] 3L_19041995_SNP [dm6]	A	C	1.367e^-5	0.551	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2609851	2L_2609851_SNP [dm3] 2L_2609851_SNP [dm6]	T	C	1.372e^-5	0.551	UPSTREAM CG15395 INTERGENIC
3L	14956462	3L_14956462_SNP [dm3] 3L_14963362_SNP [dm6]	G	C	1.417e^-5	0.551	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9411529	2L_9411529_SNP [dm3] 2L_9411529_SNP [dm6]	A	T	1.441e^-5	0.551	INTRON Shawl
2L	9406822	2L_9406822_SNP [dm3] 2L_9406822_SNP [dm6]	A	T	1.481e^-5	0.551	INTRON Shawl
2L	9414063	2L_9414063_SNP [dm3] 2L_9414063_SNP [dm6]	T	C	1.498e^-5	0.551	INTRON Shawl
3R	23796935	3R_23796935_SNP [dm3] 3R_27971213_SNP [dm6]	G	T	1.525e^-5	0.551	INTRON betaTub97EF
3R	25670940	3R_25670940_SNP [dm3] 3R_29845218_SNP [dm6]	C	T	1.527e^-5	0.551	INTRON Cad99C
2L	8353388	2L_8353388_SNP [dm3] 2L_8353388_SNP [dm6]	C	A	1.712e^-5	0.598	NON_SYNONYMOUS_CODING Mur29B	TF binding site mE1_TFBS_sens
2L	9408941	2L_9408941_SNP [dm3] 2L_9408941_SNP [dm6]	A	C	1.722e^-5	0.598	INTRON Shawl
3L	6053489	3L_6053489_SNP [dm3] 3L_6060389_SNP [dm6]	T	G	1.787e^-5	0.607	SYNONYMOUS_CODING CG6592 DOWNSTREAM CR45441 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	26717633	3R_26717633_SNP [dm3] 3R_30891911_SNP [dm6]	C	T	1.812e^-5	0.607	INTERGENIC
2L	3742353	2L_3742353_DEL [dm3] 2L_3742353_DEL [dm6]	AC	A	1.885e^-5	0.62	INTRON CG10019
2L	10115204	2L_10115204_SNP [dm3] 2L_10115204_SNP [dm6]	T	G	1.950e^-5	0.631	INTRON CG44153 & 1 other
3R	25816152	3R_25816152_SNP [dm3] 3R_29990430_SNP [dm6]	T	C	1.994e^-5	0.634	SYNONYMOUS_CODING CG7896 DOWNSTREAM Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10155111	2L_10155111_SNP [dm3] 2L_10155111_SNP [dm6]	A	G	2.040e^-5	0.638	SYNONYMOUS_CODING CG4839 INTRON CG44153
2R	15383423	2R_15383423_SNP [dm3] 2R_19495918_SNP [dm6]	C	T	2.119e^-5	0.652	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3703134	2L_3703134_SNP [dm3] 2L_3703134_SNP [dm6]	G	A	2.207e^-5	0.668	UPSTREAM CG2816 DOWNSTREAM CG43145 & 2 others INTERGENIC
3L	9900286	3L_9900286_SNP [dm3] 3L_9907186_SNP [dm6]	C	T	2.271e^-5	0.673	UPSTREAM CG34356 INTERGENIC
3R	9635547	3R_9635547_SNP [dm3] 3R_13809825_SNP [dm6]	G	A	2.296e^-5	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	18412846	X_18412846_SNP [dm3] X_18518813_SNP [dm6]	C	T	2.333e^-5	0.673	INTRON Bx & 1 other	TF binding site mE1_TFBS_chinmo
2L	11213150	2L_11213150_SNP [dm3] 2L_11213150_SNP [dm6]	A	T	2.442e^-5	0.689	INTRON ab
X	4495203	X_4495203_INS [dm3] X_4601170_INS [dm6]	A	AAA	2.462e^-5	0.689	INTRON CR32773
2L	9303748	2L_9303748_INS [dm3] 2L_9303748_INS [dm6]	G	GTCGTGGCAATG...	2.528e^-5	0.691	DOWNSTREAM CR42844 INTERGENIC
3R	12295752	3R_12295752_SNP [dm3] 3R_16470030_SNP [dm6]	A	C	2.567e^-5	0.691	UPSTREAM CSN5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9688836	2L_9688836_SNP [dm3] 2L_9688836_SNP [dm6]	T	G	2.613e^-5	0.691	INTRON Pka-C1
2L	6086077	2L_6086077_SNP [dm3] 2L_6086077_SNP [dm6]	A	T	2.634e^-5	0.691	INTRON Kr-h1	TF binding site mE1_TFBS_inv
3L	3079693	3L_3079693_SNP [dm3] 3L_3079693_SNP [dm6]	G	A	2.715e^-5	0.691	INTRON CG11486
2R	17653000	2R_17653000_SNP [dm3] 2R_21765495_SNP [dm6]	T	C	2.731e^-5	0.691	UTR_5_PRIME CG30395 UPSTREAM CR43984 DOWNSTREAM CG43982
2L	9413355	2L_9413355_SNP [dm3] 2L_9413355_SNP [dm6]	G	A	2.749e^-5	0.691	INTRON Shawl
2L	5514338	2L_5514338_SNP [dm3] 2L_5514338_SNP [dm6]	A	C	2.761e^-5	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1590090	2L_1590090_SNP [dm3] 2L_1590090_SNP [dm6]	G	A	2.891e^-5	0.714	INTRON haf
3L	6052949	3L_6052949_SNP [dm3] 3L_6059849_SNP [dm6]	T	C	3.004e^-5	0.723	UTR_5_PRIME CG6592 DOWNSTREAM CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	8543458	2R_8543458_DEL [dm3] 2R_12655953_DEL [dm6]	TT	T	3.021e^-5	0.723	UTR_5_PRIME CG8646 DOWNSTREAM ZnT49B
3L	6110981	3L_6110981_SNP [dm3] 3L_6117881_SNP [dm6]	C	G	3.067e^-5	0.723	INTRON Ets65A
3L	6051898	3L_6051898_SNP [dm3] 3L_6058798_SNP [dm6]	A	G	3.085e^-5	0.723	UPSTREAM CR45441 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_run
2R	17653174	2R_17653174_SNP [dm3] 2R_21765669_SNP [dm6]	A	C	3.143e^-5	0.728	NON_SYNONYMOUS_CODING CG30395 UPSTREAM CR43984 DOWNSTREAM CG43982
2R	10695744	2R_10695744_SNP [dm3] 2R_14808239_SNP [dm6]	T	A	3.268e^-5	0.748	UPSTREAM hui INTERGENIC	regulatory region REDfly_CRMs
2R	17653188	2R_17653188_SNP [dm3] 2R_21765683_SNP [dm6]	T	C	3.556e^-5	0.804	SPLICE_SITE_REGION CG30395 SYNONYMOUS_CODING CG30395 UPSTREAM CR43984 DOWNSTREAM CG43982
2L	19455403	2L_19455403_SNP [dm3] 2L_19455403_SNP [dm6]	C	T	3.654e^-5	0.816	UPSTREAM CG10026 INTRON CG10026
3L	6051493	3L_6051493_SNP [dm3] 3L_6058393_SNP [dm6]	A	T	3.950e^-5	0.845	UPSTREAM CR45441 INTERGENIC
3L	6106839	3L_6106839_DEL [dm3] 3L_6113739_DEL [dm6]	AA	A	4.035e^-5	0.845	INTRON Ets65A
2L	9410128	2L_9410128_SNP [dm3] 2L_9410128_SNP [dm6]	T	C	4.141e^-5	0.845	INTRON Shawl
3L	3079755	3L_3079755_INS [dm3] 3L_3079755_INS [dm6]	G	GTTTGAAGTTGCTTTATTA...	4.143e^-5	0.845	INTRON CG11486
2R	9746412	2R_9746412_SNP [dm3] 2R_13858907_SNP [dm6]	A	C	4.163e^-5	0.845	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	20767383	2L_20767383_SNP [dm3] 2L_20767383_SNP [dm6]	G	A	4.176e^-5	0.845	UTR_3_PRIME dia DOWNSTREAM dia	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	3461284	X_3461284_DEL [dm3] X_3567251_DEL [dm6]	GCAACAT	TA	4.194e^-5	0.845	INTRON CG32791 & 1 other
2L	3788095	2L_3788095_SNP [dm3] 2L_3788095_SNP [dm6]	A	T	4.224e^-5	0.845	INTRON CG3921
3L	3079865	3L_3079865_SNP [dm3] 3L_3079865_SNP [dm6]	G	A	4.237e^-5	0.845	INTRON CG11486
3L	14155598	3L_14155598_SNP [dm3] 3L_14162498_SNP [dm6]	C	A	4.310e^-5	0.845	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2278520	X_2278520_SNP [dm3] X_2384487_SNP [dm6]	G	A	4.361e^-5	0.845	SYNONYMOUS_CODING PsGEF	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	20763319	2L_20763319_SNP [dm3] 2L_20763319_SNP [dm6]	C	A	4.427e^-5	0.845	INTRON dia
3R	20331956	3R_20331956_SNP [dm3] 3R_24506234_SNP [dm6]	C	T	4.433e^-5	0.845	INTERGENIC	transposable element FlyBase
2L	19545559	2L_19545559_SNP [dm3] 2L_19545559_SNP [dm6]	C	A	4.474e^-5	0.845	UTR_3_PRIME CG10337 DOWNSTREAM ref_2_P
2L	18892949	2L_18892949_SNP [dm3] 2L_18892949_SNP [dm6]	C	T	4.518e^-5	0.845	UPSTREAM CR44737 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	16799487	3R_16799487_SNP [dm3] 3R_20973765_SNP [dm6]	T	G	4.520e^-5	0.845	INTRON Atpalpha
3R	23852450	3R_23852450_SNP [dm3] 3R_28026728_SNP [dm6]	T	C	4.549e^-5	0.845	UTR_5_PRIME CG34362
2L	2878586	2L_2878586_SNP [dm3] 2L_2878586_SNP [dm6]	T	C	4.618e^-5	0.849	UTR_5_PRIME CG31950 UPSTREAM betaggt-II & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	6051114	3L_6051114_SNP [dm3] 3L_6058014_SNP [dm6]	G	A	4.676e^-5	0.852	INTERGENIC
3R	4638305	3R_4638305_SNP [dm3] 3R_8812583_SNP [dm6]	C	T	4.740e^-5	0.855	DOWNSTREAM CG9821 INTRON CG9837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18919935	2R_18919935_DEL [dm3] 2R_23032412_DEL [dm6]	TAATTAG	GGGA	4.822e^-5	0.861	INTRON twi & 1 other
3L	6053107	3L_6053107_SNP [dm3] 3L_6060007_SNP [dm6]	A	T	4.907e^-5	0.866	NON_SYNONYMOUS_CODING CG6592 DOWNSTREAM CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	761248	X_761248_SNP [dm3] X_867215_SNP [dm6]	C	T	4.971e^-5	0.866	INTRON CG43867
3L	6110193	3L_6110193_SNP [dm3] 3L_6117093_SNP [dm6]	C	T	5.023e^-5	0.866	INTRON Ets65A
X	814062	X_814062_DEL [dm3] X_920029_DEL [dm6]	GG	G	5.061e^-5	0.866	INTRON CG43867
2L	18542033	2L_18542033_SNP [dm3] 2L_18542033_SNP [dm6]	A	G	5.077e^-5	0.866	INTRON Pde11
2R	17126737	2R_17126737_INS [dm3] 2R_21239232_INS [dm6]	A	ACA	5.157e^-5	0.871	INTRON ASPP
2R	13915162	2R_13915162_SNP [dm3] 2R_18027657_SNP [dm6]	C	G	5.234e^-5	0.877	INTERGENIC
3R	3945919	3R_3945919_SNP [dm3] 3R_8120197_SNP [dm6]	A	C	5.359e^-5	0.882	INTRON puc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9401425	2L_9401425_SNP [dm3] 2L_9401425_SNP [dm6]	C	T	5.362e^-5	0.882	INTRON Shawl
2R	13896198	2R_13896198_SNP [dm3] 2R_18008693_SNP [dm6]	T	C	5.485e^-5	0.895	UPSTREAM dpr13 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	3855832	3R_3855832_SNP [dm3] 3R_8030110_SNP [dm6]	C	A	5.584e^-5	0.903	UPSTREAM CG10903 & 1 other INTRON CG2747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	15385762	2R_15385762_SNP [dm3] 2R_19498257_SNP [dm6]	C	T	5.679e^-5	0.905	SYNONYMOUS_CODING CG15120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8121156	X_8121156_DEL [dm3] X_8227123_DEL [dm6]	CACACAC	C	5.691e^-5	0.905	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9409341	2L_9409341_SNP [dm3] 2L_9409341_SNP [dm6]	A	C	5.868e^-5	0.909	INTRON Shawl
2L	9438647	2L_9438647_SNP [dm3] 2L_9438647_SNP [dm6]	G	A	5.937e^-5	0.909	INTRON numb	TF binding site BDTNP1_TFBS_dl
3R	13998107	3R_13998107_SNP [dm3] 3R_18172385_SNP [dm6]	A	G	5.992e^-5	0.909	UPSTREAM PP2A-B' INTRON PP2A-B'	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	13998162	3R_13998162_SNP [dm3] 3R_18172440_SNP [dm6]	T	A	6.045e^-5	0.909	UPSTREAM PP2A-B' INTRON PP2A-B'	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	11398639	3L_11398639_SNP [dm3] 3L_11405539_SNP [dm6]	G	A	6.080e^-5	0.909	EXON CR44363	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	9412174	2L_9412174_SNP [dm3] 2L_9412174_SNP [dm6]	A	G	6.086e^-5	0.909	INTRON Shawl
3R	4714187	3R_4714187_SNP [dm3] 3R_8888465_SNP [dm6]	A	T	6.126e^-5	0.909	INTRON pyd
2R	4470809	2R_4470809_SNP [dm3] 2R_8583304_SNP [dm6]	A	G	6.220e^-5	0.909	INTRON CG42326
2L	16408095	2L_16408095_SNP [dm3] 2L_16408095_SNP [dm6]	C	T	6.261e^-5	0.909	INTRON CG5888
3R	9259590	3R_9259590_SNP [dm3] 3R_13433868_SNP [dm6]	G	A	6.323e^-5	0.909	INTRON yrt	TF binding site BDTNP1_TFBS_dl
3L	3080079	3L_3080079_SNP [dm3] 3L_3080079_SNP [dm6]	A	G	6.426e^-5	0.909	INTRON CG11486	TF binding site mE1_TFBS_bab1
2L	10096530	2L_10096530_SNP [dm3] 2L_10096530_SNP [dm6]	C	T	6.512e^-5	0.909	INTRON CG44153 & 1 other
2L	3581705	2L_3581705_SNP [dm3] 2L_3581705_SNP [dm6]	C	A	6.519e^-5	0.909	UPSTREAM sob INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	15826567	2L_15826567_SNP [dm3] 2L_15826567_SNP [dm6]	T	A	6.573e^-5	0.909	INTERGENIC
2R	9746419	2R_9746419_SNP [dm3] 2R_13858914_SNP [dm6]	A	T	6.657e^-5	0.909	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	9789755	2R_9789755_SNP [dm3] 2R_13902250_SNP [dm6]	G	A	6.740e^-5	0.909	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15066396	2R_15066396_SNP [dm3] 2R_19178891_SNP [dm6]	G	A	6.743e^-5	0.909	DOWNSTREAM CG10737 INTRON hppy	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	9635980	3R_9635980_SNP [dm3] 3R_13810258_SNP [dm6]	G	A	6.786e^-5	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4647252	3L_4647252_SNP [dm3] 3L_4647252_SNP [dm6]	T	A	6.802e^-5	0.909	INTRON axo
2L	9403143	2L_9403143_SNP [dm3] 2L_9403143_SNP [dm6]	A	C	6.814e^-5	0.909	INTRON Shawl
2R	9746220	2R_9746220_SNP [dm3] 2R_13858715_SNP [dm6]	A	T	6.826e^-5	0.909	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1308076	X_1308076_SNP [dm3] X_1414043_SNP [dm6]	C	A	6.916e^-5	0.909	UTR_5_PRIME futsch	TF binding site mE1_TFBS_chinmo
2L	2396918	2L_2396918_SNP [dm3] 2L_2396918_SNP [dm6]	G	A	7.017e^-5	0.909	INTRON VGlut
2R	12037970	2R_12037970_SNP [dm3] 2R_16150465_SNP [dm6]	G	T	7.028e^-5	0.909	UTR_5_PRIME lbk UPSTREAM CG10731	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	16408094	2L_16408094_SNP [dm3] 2L_16408094_SNP [dm6]	G	A	7.078e^-5	0.909	INTRON CG5888
3L	19052595	3L_19052595_SNP [dm3] 3L_19059495_SNP [dm6]	G	A	7.087e^-5	0.909	UTR_3_PRIME CG3797 DOWNSTREAM CG3797	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6445891	2L_6445891_SNP [dm3] 2L_6445891_SNP [dm6]	G	T	7.122e^-5	0.909	SYNONYMOUS_CODING CG9527	TF binding site mE1_TFBS_cad
2L	9415193	2L_9415193_SNP [dm3] 2L_9415193_SNP [dm6]	A	T	7.215e^-5	0.909	UPSTREAM Shawl INTERGENIC
2R	16369853	2R_16369853_SNP [dm3] 2R_20482348_SNP [dm6]	G	A	7.232e^-5	0.909	INTERGENIC
3R	12293440	3R_12293440_SNP [dm3] 3R_16467718_SNP [dm6]	A	C	7.258e^-5	0.909	SYNONYMOUS_CODING CG42232	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	15063209	3L_15063209_SNP [dm3] 3L_15070109_SNP [dm6]	C	T	7.274e^-5	0.909	SYNONYMOUS_CODING cp309	TF binding site mE1_TFBS_cad
2R	12089985	2R_12089985_SNP [dm3] 2R_16202480_SNP [dm6]	T	G	7.314e^-5	0.909	SYNONYMOUS_CODING shark DOWNSTREAM mrj	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	19046061	3L_19046061_SNP [dm3] 3L_19052961_SNP [dm6]	G	A	7.318e^-5	0.909	UTR_3_PRIME CG43407 UPSTREAM Acp76A DOWNSTREAM CG43407 & 1 other
2R	15067064	2R_15067064_SNP [dm3] 2R_19179559_SNP [dm6]	C	A	7.392e^-5	0.911	UTR_5_PRIME hppy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	9027256	3L_9027256_SNP [dm3] 3L_9034156_SNP [dm6]	G	T	7.532e^-5	0.911	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2L	11222986	2L_11222986_SNP [dm3] 2L_11222986_SNP [dm6]	C	T	7.605e^-5	0.911	INTRON ab
2R	8445024	2R_8445024_SNP [dm3] 2R_12557519_SNP [dm6]	G	A	7.737e^-5	0.911	SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	8710997	3R_8710997_SNP [dm3] 3R_12885275_SNP [dm6]	C	A	7.775e^-5	0.911	INTERGENIC
2L	2878727	2L_2878727_SNP [dm3] 2L_2878727_SNP [dm6]	C	A	7.845e^-5	0.911	SYNONYMOUS_CODING CG31950 UPSTREAM betaggt-II & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	2545960	2L_2545960_SNP [dm3] 2L_2545960_SNP [dm6]	C	A	7.885e^-5	0.911	INTERGENIC
X	2244470	X_2244470_SNP [dm3] X_2350437_SNP [dm6]	G	T	7.908e^-5	0.911	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
2R	3663289	2R_3663289_SNP [dm3] 2R_7775784_SNP [dm6]	T	A	7.909e^-5	0.911	INTRON CG30497 & 1 other
3R	9831023	3R_9831023_SNP [dm3] 3R_14005301_SNP [dm6]	T	C	8.072e^-5	0.911	INTRON rdx	TF binding site BDTNP1_TFBS_dl
3R	20534506	3R_20534506_DEL [dm3] 3R_24708784_DEL [dm6]	CAC	C	8.154e^-5	0.911	UTR_3_PRIME slo DOWNSTREAM slo
2R	6602135	2R_6602135_SNP [dm3] 2R_10714630_SNP [dm6]	G	A	8.266e^-5	0.911	SYNONYMOUS_CODING stan
2L	2878419	2L_2878419_SNP [dm3] 2L_2878419_SNP [dm6]	G	A	8.281e^-5	0.911	UTR_5_PRIME CG31950 UPSTREAM CG31950 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	13998110	3R_13998110_SNP [dm3] 3R_18172388_SNP [dm6]	T	C	8.321e^-5	0.911	UPSTREAM PP2A-B' INTRON PP2A-B'	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	3461294	X_3461294_SNP [dm3] X_3567261_SNP [dm6]	G	A	8.434e^-5	0.911	INTRON CG32791 & 1 other
2L	4705703	2L_4705703_SNP [dm3] 2L_4705703_SNP [dm6]	G	A	8.436e^-5	0.911	UTR_5_PRIME CG34351	TF binding site mE1_TFBS_chinmo
X	17027464	X_17027464_SNP [dm3] X_17133431_SNP [dm6]	G	T	8.455e^-5	0.911	UPSTREAM CG5004 INTRON CG5004
2L	16408170	2L_16408170_SNP [dm3] 2L_16408170_SNP [dm6]	A	T	8.519e^-5	0.911	INTRON CG5888
X	11825171	X_11825171_SNP [dm3] X_11931138_SNP [dm6]	T	C	8.545e^-5	0.911	UPSTREAM CG10362 DOWNSTREAM cac INTERGENIC
3L	7586065	3L_7586065_SNP [dm3] 3L_7592965_SNP [dm6]	T	C	8.619e^-5	0.911	UPSTREAM CG33275 INTERGENIC
2R	13999157	2R_13999157_SNP [dm3] 2R_18111652_SNP [dm6]	C	T	8.665e^-5	0.911	INTERGENIC
3L	16485456	3L_16485456_SNP [dm3] 3L_16492356_SNP [dm6]	C	T	8.889e^-5	0.911	SYNONYMOUS_CODING CG42514 UTR_3_PRIME CG43373 INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	6051438	3L_6051438_SNP [dm3] 3L_6058338_SNP [dm6]	T	A	8.984e^-5	0.911	UPSTREAM CR45441 INTERGENIC
2L	20913208	2L_20913208_SNP [dm3] 2L_20913208_SNP [dm6]	G	A	9.049e^-5	0.911	INTRON sky & 1 other
2L	19685829	2L_19685829_SNP [dm3] 2L_19685829_SNP [dm6]	T	C	9.054e^-5	0.911	INTRON Lar
2L	18616118	2L_18616118_SNP [dm3] 2L_18616118_SNP [dm6]	C	A	9.110e^-5	0.911	UPSTREAM CG15161 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	20762623	2L_20762623_INS [dm3] 2L_20762623_INS [dm6]	G	GTGGG	9.130e^-5	0.911	DOWNSTREAM dia INTRON dia	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18962481	2R_18962481_SNP [dm3] 2R_23074958_SNP [dm6]	T	C	9.211e^-5	0.911	UPSTREAM snoRNA:229 & 2 others INTRON CG3085	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9688034	2L_9688034_SNP [dm3] 2L_9688034_SNP [dm6]	G	A	9.256e^-5	0.911	INTRON Pka-C1	TF binding site mE1_TFBS_inv
2R	15410514	2R_15410514_SNP [dm3] 2R_19523009_SNP [dm6]	T	C	9.264e^-5	0.911	UTR_3_PRIME sm DOWNSTREAM sm
X	18412135	X_18412135_SNP [dm3] X_18518102_SNP [dm6]	G	A	9.316e^-5	0.911	INTRON Bx & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3872545	2L_3872545_SNP [dm3] 2L_3872545_SNP [dm6]	T	A	9.320e^-5	0.911	UPSTREAM CG31957 DOWNSTREAM capu INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8751706	3R_8751706_SNP [dm3] 3R_12925984_SNP [dm6]	G	C	9.397e^-5	0.911	INTRON beat-Vb
3L	3079642	3L_3079642_SNP [dm3] 3L_3079642_SNP [dm6]	G	A	9.443e^-5	0.911	INTRON CG11486
2L	16408148	2L_16408148_DEL [dm3] 2L_16408148_DEL [dm6]	ATTGTA	A	9.504e^-5	0.911	INTRON CG5888
2R	13508428	2R_13508428_SNP [dm3] 2R_17620923_SNP [dm6]	C	G	9.567e^-5	0.911	INTRON CG10936
2L	1139886	2L_1139886_SNP [dm3] 2L_1139886_SNP [dm6]	A	G	9.595e^-5	0.911	NON_SYNONYMOUS_CODING CG4577	TF binding site mE1_TFBS_cad
2R	19310215	2R_19310215_SNP [dm3] 2R_23422692_SNP [dm6]	G	A	9.625e^-5	0.911	START_GAINED CG9815 UTR_5_PRIME CG9815 INTRON CG9815
3L	10161020	3L_10161020_SNP [dm3] 3L_10167920_SNP [dm6]	T	C	9.657e^-5	0.911	UPSTREAM CG6628 INTRON dpr10
2L	6469847	2L_6469847_SNP [dm3] 2L_6469847_SNP [dm6]	G	C	9.664e^-5	0.911	SYNONYMOUS_CODING mmy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14224532	3L_14224532_SNP [dm3] 3L_14231432_SNP [dm6]	G	C	9.687e^-5	0.911	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	19974981	X_19974981_SNP [dm3] X_20080948_SNP [dm6]	G	A	9.718e^-5	0.911	INTERGENIC
X	2555246	X_2555246_SNP [dm3] X_2661213_SNP [dm6]	C	T	9.745e^-5	0.911	INTRON sgg
3L	2815053	3L_2815053_SNP [dm3] 3L_2815053_SNP [dm6]	T	G	9.854e^-5	0.911	INTRON CG43444
3R	12597747	3R_12597747_SNP [dm3] 3R_16772025_SNP [dm6]	G	T	1.001e^-4	0.911	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11213090	2L_11213090_SNP [dm3] 2L_11213090_SNP [dm6]	T	C	1.004e^-4	0.911	INTRON ab
2L	10115307	2L_10115307_SNP [dm3] 2L_10115307_SNP [dm6]	T	C	1.006e^-4	0.911	INTRON CG44153 & 1 other
3L	9900046	3L_9900046_SNP [dm3] 3L_9906946_SNP [dm6]	A	C	1.007e^-4	0.911	INTERGENIC
X	11218042	X_11218042_SNP [dm3] X_11324009_SNP [dm6]	A	T	1.007e^-4	0.911	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9746327	2R_9746327_SNP [dm3] 2R_13858822_SNP [dm6]	G	A	1.019e^-4	0.911	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	18412217	X_18412217_SNP [dm3] X_18518184_SNP [dm6]	A	G	1.020e^-4	0.911	INTRON Bx & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19282031	2R_19282031_SNP [dm3] 2R_23394508_SNP [dm6]	T	C	1.024e^-4	0.911	INTRON CG3530	TF binding site mE1_TFBS_chinmo
2R	5233377	2R_5233377_SNP [dm3] 2R_9345872_SNP [dm6]	G	A	1.025e^-4	0.911	NON_SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
2R	13511329	2R_13511329_SNP [dm3] 2R_17623824_SNP [dm6]	G	A	1.028e^-4	0.911	INTRON CG10936	TF binding site mE1_TFBS_sens
2L	20913193	2L_20913193_SNP [dm3] 2L_20913193_SNP [dm6]	C	T	1.032e^-4	0.911	INTRON sky & 1 other
3L	3846763	3L_3846763_SNP [dm3] 3L_3846763_SNP [dm6]	T	A	1.036e^-4	0.911	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
2L	10069668	2L_10069668_SNP [dm3] 2L_10069668_SNP [dm6]	C	G	1.043e^-4	0.911	NON_SYNONYMOUS_CODING CG44153	TF binding site BDTNP1_TFBS_sna
2L	12514989	2L_12514989_SNP [dm3] 2L_12514989_SNP [dm6]	G	A	1.049e^-4	0.911	INTRON bun
2L	12719197	2L_12719197_DEL [dm3] 2L_12719197_DEL [dm6]	CAA	T	1.059e^-4	0.911	UTR_5_PRIME MRP INTRON CG5792	TF binding site mE1_TFBS_Trl
3L	4982051	3L_4982051_SNP [dm3] 3L_4982051_SNP [dm6]	C	G	1.062e^-4	0.911	DOWNSTREAM CR45685 INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13511208	2R_13511208_SNP [dm3] 2R_17623703_SNP [dm6]	A	G	1.066e^-4	0.911	INTRON CG10936
3L	3080073	3L_3080073_SNP [dm3] 3L_3080073_SNP [dm6]	T	G	1.079e^-4	0.911	INTRON CG11486	TF binding site mE1_TFBS_bab1
3L	6119303	3L_6119303_SNP [dm3] 3L_6126203_SNP [dm6]	C	T	1.093e^-4	0.911	INTRON l_3_mbn	TF binding site mE1_TFBS_HSA
X	11172363	X_11172363_SNP [dm3] X_11278330_SNP [dm6]	A	G	1.108e^-4	0.911	INTRON CG44422
3L	9012466	3L_9012466_SNP [dm3] 3L_9019366_SNP [dm6]	G	A	1.109e^-4	0.911	UPSTREAM Doc2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	9683651	2L_9683651_SNP [dm3] 2L_9683651_SNP [dm6]	A	T	1.112e^-4	0.911	UTR_3_PRIME Pka-C1
2R	13390757	2R_13390757_SNP [dm3] 2R_17503252_SNP [dm6]	A	C	1.117e^-4	0.911	INTRON CG43164	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7772235	2L_7772235_SNP [dm3] 2L_7772235_SNP [dm6]	T	A	1.123e^-4	0.911	INTRON CG7191	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9399578	2L_9399578_DEL [dm3] 2L_9399578_DEL [dm6]	CT	C	1.131e^-4	0.911	INTRON Shawl
3L	17878409	3L_17878409_SNP [dm3] 3L_17885309_SNP [dm6]	A	C	1.133e^-4	0.911	UPSTREAM CG5506 DOWNSTREAM CG16775 EXON CR42548
2L	15826838	2L_15826838_SNP [dm3] 2L_15826838_SNP [dm6]	T	A	1.136e^-4	0.911	INTERGENIC
3R	23798475	3R_23798475_SNP [dm3] 3R_27972753_SNP [dm6]	G	T	1.142e^-4	0.911	INTRON betaTub97EF
2L	2879011	2L_2879011_INS [dm3] 2L_2879011_INS [dm6]	T	TCCGTTT	1.146e^-4	0.911	UPSTREAM betaggt-II & 1 other DOWNSTREAM CG31950 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9406895	2L_9406895_SNP [dm3] 2L_9406895_SNP [dm6]	G	T	1.153e^-4	0.911	INTRON Shawl
3L	12279041	3L_12279041_SNP [dm3] 3L_12285941_SNP [dm6]	G	C	1.157e^-4	0.911	INTERGENIC
3L	9026283	3L_9026283_SNP [dm3] 3L_9033183_SNP [dm6]	G	T	1.157e^-4	0.911	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	10161021	3L_10161021_SNP [dm3] 3L_10167921_SNP [dm6]	A	T	1.157e^-4	0.911	UPSTREAM CG6628 INTRON dpr10
2L	2879228	2L_2879228_SNP [dm3] 2L_2879228_SNP [dm6]	G	A	1.161e^-4	0.911	UTR_5_PRIME betaggt-II UPSTREAM Prx6005 DOWNSTREAM CG31950	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	4701267	2L_4701267_SNP [dm3] 2L_4701267_SNP [dm6]	C	T	1.162e^-4	0.911	INTRON CG34351 & 1 other
3L	4647129	3L_4647129_SNP [dm3] 3L_4647129_SNP [dm6]	C	T	1.163e^-4	0.911	INTRON axo
3L	8195576	3L_8195576_SNP [dm3] 3L_8202476_SNP [dm6]	G	T	1.172e^-4	0.911	UPSTREAM CG13679 & 1 other INTERGENIC
X	19608424	X_19608424_DEL [dm3] X_19714391_DEL [dm6]	TAGTAAGTG	A	1.189e^-4	0.911	DOWNSTREAM CR44889 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10590294	2L_10590294_SNP [dm3] 2L_10590294_SNP [dm6]	C	T	1.195e^-4	0.911	INTRON Trim9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	16408072	2L_16408072_SNP [dm3] 2L_16408072_SNP [dm6]	A	C	1.197e^-4	0.911	INTRON CG5888
3R	18395308	3R_18395308_SNP [dm3] 3R_22569586_SNP [dm6]	C	T	1.213e^-4	0.911	UPSTREAM CG33110 INTERGENIC
3R	8738971	3R_8738971_SNP [dm3] 3R_12913249_SNP [dm6]	G	A	1.214e^-4	0.911	INTERGENIC
3R	18088772	3R_18088772_SNP [dm3] 3R_22263050_SNP [dm6]	G	C	1.220e^-4	0.911	INTRON SKIP
2L	19470776	2L_19470776_SNP [dm3] 2L_19470776_SNP [dm6]	G	A	1.227e^-4	0.911	UPSTREAM CR45723 DOWNSTREAM CR43839 & 1 other INTERGENIC
2R	9078400	2R_9078400_SNP [dm3] 2R_13190895_SNP [dm6]	C	A	1.228e^-4	0.911	UPSTREAM seq & 2 others INTRON Kdm4B	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6051351	3L_6051351_SNP [dm3] 3L_6058251_SNP [dm6]	A	C	1.234e^-4	0.911	UPSTREAM CR45441 INTERGENIC
2L	16013197	2L_16013197_SNP [dm3] 2L_16013197_SNP [dm6]	G	A	1.238e^-4	0.911	INTRON beat-Ic
2L	12266602	2L_12266602_SNP [dm3] 2L_12266602_SNP [dm6]	G	A	1.242e^-4	0.911	INTRON aret
2L	4370641	2L_4370641_SNP [dm3] 2L_4370641_SNP [dm6]	G	A	1.244e^-4	0.911	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2L	10120471	2L_10120471_SNP [dm3] 2L_10120471_SNP [dm6]	A	T	1.248e^-4	0.911	INTRON CG44153 & 1 other
2L	9688001	2L_9688001_SNP [dm3] 2L_9688001_SNP [dm6]	T	A	1.249e^-4	0.911	INTRON Pka-C1	TF binding site mE1_TFBS_inv
3R	8757570	3R_8757570_SNP [dm3] 3R_12931848_SNP [dm6]	A	G	1.255e^-4	0.911	UPSTREAM CR44236 INTRON beat-Vb
3R	11952501	3R_11952501_SNP [dm3] 3R_16126779_SNP [dm6]	C	A	1.267e^-4	0.911	INTRON Sb
X	3625608	X_3625608_SNP [dm3] X_3731575_SNP [dm6]	A	G	1.268e^-4	0.911	INTRON tlk
3L	6051407	3L_6051407_SNP [dm3] 3L_6058307_SNP [dm6]	G	A	1.270e^-4	0.911	UPSTREAM CR45441 INTERGENIC
2R	11644161	2R_11644161_SNP [dm3] 2R_15756656_SNP [dm6]	C	T	1.272e^-4	0.911	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14730920	3L_14730920_SNP [dm3] 3L_14737820_SNP [dm6]	G	T	1.285e^-4	0.911	INTRON ome
3L	6102702	3L_6102702_SNP [dm3] 3L_6109602_SNP [dm6]	C	G	1.293e^-4	0.911	INTRON Ets65A
2L	22554309	2L_22554309_SNP [dm3] 2L_22661577_SNP [dm6]	C	T	1.296e^-4	0.911	INTRON CG40006
3R	11216218	3R_11216218_SNP [dm3] 3R_15390496_SNP [dm6]	T	A	1.307e^-4	0.911	INTRON Rbp
2L	3735390	2L_3735390_SNP [dm3] 2L_3735390_SNP [dm6]	C	A	1.309e^-4	0.911	INTRON CG10019
2R	6437562	2R_6437562_INS [dm3] 2R_10550057_INS [dm6]	C	CACATCTCT	1.320e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sbb
3R	18527094	3R_18527094_SNP [dm3] 3R_22701372_SNP [dm6]	T	C	1.321e^-4	0.911	SYNONYMOUS_CODING CCAP UPSTREAM CG6972
2L	4376521	2L_4376521_SNP [dm3] 2L_4376521_SNP [dm6]	A	T	1.327e^-4	0.911	INTRON Traf4	TF binding site mE1_TFBS_cad
3R	9592543	3R_9592543_SNP [dm3] 3R_13766821_SNP [dm6]	T	C	1.328e^-4	0.911	UPSTREAM Cht5 INTRON CG9312
2L	16408177	2L_16408177_DEL [dm3] 2L_16408177_DEL [dm6]	AGCACCAAATATGTGTACTA...	C	1.352e^-4	0.911	INTRON CG5888
2L	5606602	2L_5606602_SNP [dm3] 2L_5606602_SNP [dm6]	C	T	1.354e^-4	0.911	INTRON CG14010
2L	13078289	2L_13078289_SNP [dm3] 2L_13078289_SNP [dm6]	G	T	1.367e^-4	0.911	INTERGENIC
3R	3856531	3R_3856531_SNP [dm3] 3R_8030809_SNP [dm6]	A	G	1.372e^-4	0.911	UPSTREAM CG10903 & 1 other INTRON CG10903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9413701	2L_9413701_SNP [dm3] 2L_9413701_SNP [dm6]	C	A	1.375e^-4	0.911	INTRON Shawl
2R	9746223	2R_9746223_SNP [dm3] 2R_13858718_SNP [dm6]	A	C	1.386e^-4	0.911	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15740669	2L_15740669_SNP [dm3] 2L_15740669_SNP [dm6]	G	C	1.404e^-4	0.911	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14268213	3R_14268213_SNP [dm3] 3R_18442491_SNP [dm6]	A	C	1.421e^-4	0.911	INTRON fru
2R	18935431	2R_18935431_SNP [dm3] 2R_23047908_SNP [dm6]	G	C	1.423e^-4	0.911	SYNONYMOUS_CODING twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13915111	2R_13915111_SNP [dm3] 2R_18027606_SNP [dm6]	G	T	1.423e^-4	0.911	INTERGENIC
2L	16408120	2L_16408120_SNP [dm3] 2L_16408120_SNP [dm6]	C	T	1.423e^-4	0.911	INTRON CG5888
3L	6054932	3L_6054932_SNP [dm3] 3L_6061832_SNP [dm6]	T	A	1.426e^-4	0.911	DOWNSTREAM CG6592 INTRON CG10472
2L	11143706	2L_11143706_SNP [dm3] 2L_11143706_SNP [dm6]	T	A	1.429e^-4	0.911	DOWNSTREAM CG31867 INTRON Gyc32E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	2464141	X_2464141_INS [dm3] X_2570108_INS [dm6]	C	CC	1.430e^-4	0.911	INTRON Pdfr
3R	8744649	3R_8744649_SNP [dm3] 3R_12918927_SNP [dm6]	T	A	1.431e^-4	0.911	INTRON beat-Vb
3L	3522691	3L_3522691_SNP [dm3] 3L_3522691_SNP [dm6]	C	T	1.440e^-4	0.911	DOWNSTREAM CR45043 INTRON Eip63E
3L	9900300	3L_9900300_SNP [dm3] 3L_9907200_SNP [dm6]	A	T	1.444e^-4	0.911	UPSTREAM CG34356 INTERGENIC
2R	19282167	2R_19282167_SNP [dm3] 2R_23394644_SNP [dm6]	G	C	1.447e^-4	0.911	INTRON CG3530	TF binding site mE1_TFBS_chinmo
3R	14524243	3R_14524243_SNP [dm3] 3R_18698521_SNP [dm6]	T	C	1.449e^-4	0.911	INTERGENIC
2L	6977754	2L_6977754_SNP [dm3] 2L_6977754_SNP [dm6]	A	G	1.451e^-4	0.911	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1351384	2L_1351384_SNP [dm3] 2L_1351384_SNP [dm6]	A	T	1.458e^-4	0.911	DOWNSTREAM CG5556 INTERGENIC
2L	4701319	2L_4701319_SNP [dm3] 2L_4701319_SNP [dm6]	A	G	1.458e^-4	0.911	SYNONYMOUS_CODING Taf12L INTRON CG34351
2L	13068705	2L_13068705_SNP [dm3] 2L_13068705_SNP [dm6]	T	G	1.464e^-4	0.911	INTERGENIC
2L	3742362	2L_3742362_SNP [dm3] 2L_3742362_SNP [dm6]	A	G	1.471e^-4	0.911	INTRON CG10019
X	3626496	X_3626496_SNP [dm3] X_3732463_SNP [dm6]	A	C	1.478e^-4	0.911	INTRON tlk
2L	18538670	2L_18538670_SNP [dm3] 2L_18538670_SNP [dm6]	T	G	1.482e^-4	0.911	INTRON Pde11
3L	6113427	3L_6113427_SNP [dm3] 3L_6120327_SNP [dm6]	T	G	1.484e^-4	0.911	INTRON Ets65A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3244349	2L_3244349_SNP [dm3] 2L_3244349_SNP [dm6]	C	G	1.485e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18912764	2L_18912764_SNP [dm3] 2L_18912764_SNP [dm6]	A	C	1.492e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17575514	2R_17575514_SNP [dm3] 2R_21688009_SNP [dm6]	C	G	1.492e^-4	0.911	UTR_3_PRIME CG30285 UPSTREAM Tbp & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3L	18172176	3L_18172176_SNP [dm3] 3L_18179076_SNP [dm6]	C	T	1.507e^-4	0.911	INTRON W
3L	14730944	3L_14730944_SNP [dm3] 3L_14737844_SNP [dm6]	A	G	1.507e^-4	0.911	INTRON ome
3R	13976439	3R_13976439_SNP [dm3] 3R_18150717_SNP [dm6]	G	A	1.519e^-4	0.911	INTERGENIC
2R	19281857	2R_19281857_SNP [dm3] 2R_23394334_SNP [dm6]	C	A	1.524e^-4	0.911	INTRON CG3530	TF binding site mE1_TFBS_chinmo
X	8393431	X_8393431_SNP [dm3] X_8499398_SNP [dm6]	A	T	1.526e^-4	0.911	INTRON CG33181
2L	20761141	2L_20761141_INS [dm3] 2L_20761141_INS [dm6]	G	GTG	1.546e^-4	0.911	UTR_3_PRIME dia INTRON dia	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	6437610	2R_6437610_SNP [dm3] 2R_10550105_SNP [dm6]	C	T	1.550e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sbb
3L	4570210	3L_4570210_SNP [dm3] 3L_4570210_SNP [dm6]	C	A	1.554e^-4	0.911	INTRON CG42540
X	8394424	X_8394424_SNP [dm3] X_8500391_SNP [dm6]	A	G	1.564e^-4	0.911	INTRON CG33181
3L	14047588	3L_14047588_SNP [dm3] 3L_14054488_SNP [dm6]	C	A	1.567e^-4	0.911	DOWNSTREAM CG43986 INTRON CG32138
3L	6106869	3L_6106869_SNP [dm3] 3L_6113769_SNP [dm6]	T	A	1.567e^-4	0.911	INTRON Ets65A
3L	3079826	3L_3079826_SNP [dm3] 3L_3079826_SNP [dm6]	G	C	1.575e^-4	0.911	INTRON CG11486
3R	7724857	3R_7724857_SNP [dm3] 3R_11899135_SNP [dm6]	T	C	1.575e^-4	0.911	SYNONYMOUS_CODING Cad87A DOWNSTREAM CG34307	TF binding site mE1_TFBS_sens
X	12261709	X_12261709_SNP [dm3] X_12367676_SNP [dm6]	A	T	1.577e^-4	0.911	INTERGENIC
2L	20984083	2L_20984083_SNP [dm3] 2L_20984083_SNP [dm6]	T	C	1.578e^-4	0.911	INTRON CG42238
2R	9746448	2R_9746448_SNP [dm3] 2R_13858943_SNP [dm6]	A	C	1.589e^-4	0.911	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	11230759	3L_11230759_SNP [dm3] 3L_11237659_SNP [dm6]	C	T	1.596e^-4	0.911	UPSTREAM CR44718 DOWNSTREAM CR44719 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8746283	3L_8746283_SNP [dm3] 3L_8753183_SNP [dm6]	C	T	1.606e^-4	0.911	UPSTREAM Fhos INTERGENIC
2R	1740950	2R_1740950_SNP [dm3] 2R_5853445_SNP [dm6]	A	C	1.607e^-4	0.911	INTRON dpr12
3L	6054617	3L_6054617_SNP [dm3] 3L_6061517_SNP [dm6]	A	G	1.609e^-4	0.911	SYNONYMOUS_CODING CG10472 DOWNSTREAM CG6592
2L	5467196	2L_5467196_SNP [dm3] 2L_5467196_SNP [dm6]	A	T	1.611e^-4	0.911	UTR_3_PRIME mid DOWNSTREAM mid
3L	6050261	3L_6050261_INS [dm3] 3L_6057161_INS [dm6]	C	CCC	1.615e^-4	0.911	DOWNSTREAM tan INTERGENIC
X	3277717	X_3277717_SNP [dm3] X_3383684_SNP [dm6]	C	A	1.624e^-4	0.911	INTRON dm & 1 other
2R	13512371	2R_13512371_SNP [dm3] 2R_17624866_SNP [dm6]	T	A	1.632e^-4	0.911	INTRON CG10936
3L	2336837	3L_2336837_SNP [dm3] 3L_2336837_SNP [dm6]	C	A	1.632e^-4	0.911	INTRON MsR1
X	3461298	X_3461298_MNP [dm3] X_3567265_MNP [dm6]	CCTA	TTAG	1.632e^-4	0.911	INTRON CG32791 & 1 other
3R	14268206	3R_14268206_SNP [dm3] 3R_18442484_SNP [dm6]	T	G	1.632e^-4	0.911	INTRON fru
3R	26725014	3R_26725014_SNP [dm3] 3R_30899292_SNP [dm6]	C	A	1.637e^-4	0.911	INTRON Cyp4c3
3L	13797681	3L_13797681_SNP [dm3] 3L_13804581_SNP [dm6]	T	A	1.643e^-4	0.911	INTERGENIC
3R	9826800	3R_9826800_SNP [dm3] 3R_14001078_SNP [dm6]	G	T	1.648e^-4	0.911	INTRON rdx	TF binding site mE1_TFBS_cad
2L	19639363	2L_19639363_SNP [dm3] 2L_19639363_SNP [dm6]	C	A	1.673e^-4	0.911	INTRON Lar
2R	17578335	2R_17578335_SNP [dm3] 2R_21690830_SNP [dm6]	G	A	1.677e^-4	0.911	UTR_5_PRIME Tim10 UTR_3_PRIME CG42497 UPSTREAM CG42496 & 1 other DOWNSTREAM CG10307	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12266656	2L_12266656_SNP [dm3] 2L_12266656_SNP [dm6]	C	T	1.680e^-4	0.911	INTRON aret
2R	17459480	2R_17459480_SNP [dm3] 2R_21571975_SNP [dm6]	C	A	1.683e^-4	0.911	UPSTREAM CG10440 INTRON CG10440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2879148	2L_2879148_SNP [dm3] 2L_2879148_SNP [dm6]	T	C	1.691e^-4	0.911	UTR_5_PRIME betaggt-II UPSTREAM Prx6005 DOWNSTREAM CG31950	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	19056950	3L_19056950_SNP [dm3] 3L_19063850_SNP [dm6]	T	A	1.692e^-4	0.911	INTRON CG6812	TF binding site BDTNP1_TFBS_hb mE1_TFBS_Trl
3L	6054283	3L_6054283_SNP [dm3] 3L_6061183_SNP [dm6]	T	C	1.694e^-4	0.911	SYNONYMOUS_CODING CG6592 DOWNSTREAM CG10472
3L	6190612	3L_6190612_SNP [dm3] 3L_6197512_SNP [dm6]	T	C	1.695e^-4	0.911	SYNONYMOUS_CODING Trn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1574273	2L_1574273_SNP [dm3] 2L_1574273_SNP [dm6]	T	C	1.706e^-4	0.911	INTRON haf
X	3461305	X_3461305_SNP [dm3] X_3567272_SNP [dm6]	A	T	1.711e^-4	0.911	INTRON CG32791 & 1 other
3L	14730208	3L_14730208_SNP [dm3] 3L_14737108_SNP [dm6]	G	A	1.713e^-4	0.911	INTRON ome
2R	17575189	2R_17575189_SNP [dm3] 2R_21687684_SNP [dm6]	G	A	1.715e^-4	0.911	UPSTREAM Tbp DOWNSTREAM CG30285 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13390726	2R_13390726_SNP [dm3] 2R_17503221_SNP [dm6]	A	C	1.720e^-4	0.911	INTRON CG43164	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15740660	2L_15740660_SNP [dm3] 2L_15740660_SNP [dm6]	C	G	1.728e^-4	0.911	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17655108	2R_17655108_SNP [dm3] 2R_21767603_SNP [dm6]	T	C	1.734e^-4	0.911	INTRON CG30395
3L	4647125	3L_4647125_SNP [dm3] 3L_4647125_SNP [dm6]	A	T	1.741e^-4	0.911	INTRON axo
2L	12455211	2L_12455211_SNP [dm3] 2L_12455211_SNP [dm6]	T	C	1.746e^-4	0.911	DOWNSTREAM bun & 1 other INTERGENIC
3L	19056923	3L_19056923_DEL [dm3] 3L_19063823_DEL [dm6]	TTTTG	T	1.751e^-4	0.911	INTRON CG6812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Trl
3L	19056933	3L_19056933_SNP [dm3] 3L_19063833_SNP [dm6]	T	A	1.751e^-4	0.911	INTRON CG6812	TF binding site BDTNP1_TFBS_hb mE1_TFBS_Trl
3L	19056940	3L_19056940_DEL [dm3] 3L_19063840_DEL [dm6]	TTATGC	A	1.751e^-4	0.911	INTRON CG6812	TF binding site BDTNP1_TFBS_hb mE1_TFBS_Trl
3L	19056949	3L_19056949_SNP [dm3] 3L_19063849_SNP [dm6]	T	A	1.751e^-4	0.911	INTRON CG6812	TF binding site BDTNP1_TFBS_hb mE1_TFBS_Trl
2R	19505428	2R_19505428_SNP [dm3] 2R_23617905_SNP [dm6]	T	G	1.758e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_D
2L	22435667	2L_22435667_SNP [dm3] 2L_22542935_SNP [dm6]	T	C	1.769e^-4	0.911	INTRON CG17490
2L	5549540	2L_5549540_SNP [dm3] 2L_5549540_SNP [dm6]	C	T	1.778e^-4	0.911	UTR_3_PRIME Oscillin DOWNSTREAM CG14014 & 1 other
3R	22249717	3R_22249717_SNP [dm3] 3R_26423995_SNP [dm6]	G	A	1.779e^-4	0.911	DOWNSTREAM CG6503 INTERGENIC
X	6078175	X_6078175_SNP [dm3] X_6184142_SNP [dm6]	C	A	1.785e^-4	0.911	INTRON Ca-alpha1T
X	2464147	X_2464147_SNP [dm3] X_2570114_SNP [dm6]	T	C	1.786e^-4	0.911	INTRON Pdfr
3L	4981988	3L_4981988_SNP [dm3] 3L_4981988_SNP [dm6]	T	A	1.787e^-4	0.911	DOWNSTREAM CR45685 INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19056929	3L_19056929_SNP [dm3] 3L_19063829_SNP [dm6]	T	A	1.791e^-4	0.911	INTRON CG6812	TF binding site BDTNP1_TFBS_hb mE1_TFBS_Trl
3L	19056934	3L_19056934_SNP [dm3] 3L_19063834_SNP [dm6]	C	T	1.791e^-4	0.911	INTRON CG6812	TF binding site BDTNP1_TFBS_hb mE1_TFBS_Trl
3L	19056930	3L_19056930_SNP [dm3] 3L_19063830_SNP [dm6]	G	C	1.792e^-4	0.911	INTRON CG6812	TF binding site BDTNP1_TFBS_hb mE1_TFBS_Trl
X	12019406	X_12019406_SNP [dm3] X_12125373_SNP [dm6]	C	T	1.796e^-4	0.911	INTRON Ten-a
2R	3495195	2R_3495195_INS [dm3] 2R_7607690_INS [dm6]	C	CTTCATTGTCCGAAGGCCTT...	1.797e^-4	0.911	INTRON CG1358
3R	8743916	3R_8743916_SNP [dm3] 3R_12918194_SNP [dm6]	A	G	1.798e^-4	0.911	INTRON beat-Vb
3L	19056922	3L_19056922_SNP [dm3] 3L_19063822_SNP [dm6]	T	A	1.800e^-4	0.911	INTRON CG6812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Trl
2L	9180974	2L_9180974_SNP [dm3] 2L_9180974_SNP [dm6]	T	G	1.807e^-4	0.911	INTRON tai
3R	3599499	3R_3599499_SNP [dm3] 3R_7773777_SNP [dm6]	C	T	1.807e^-4	0.911	INTERGENIC
2R	13512975	2R_13512975_SNP [dm3] 2R_17625470_SNP [dm6]	A	G	1.813e^-4	0.911	INTRON CG10936
X	2244317	X_2244317_SNP [dm3] X_2350284_SNP [dm6]	C	T	1.816e^-4	0.911	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9735938	3R_9735938_SNP [dm3] 3R_13910216_SNP [dm6]	A	C	1.843e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
X	8156220	X_8156220_SNP [dm3] X_8262187_SNP [dm6]	A	G	1.844e^-4	0.911	INTRON CG1632
3R	23798521	3R_23798521_SNP [dm3] 3R_27972799_SNP [dm6]	T	C	1.847e^-4	0.911	INTRON betaTub97EF
3L	7055762	3L_7055762_SNP [dm3] 3L_7062662_SNP [dm6]	A	T	1.848e^-4	0.911	NON_SYNONYMOUS_CODING CG8641	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	276448	2R_276448_SNP [dm3] 2R_4388943_SNP [dm6]	T	C	1.857e^-4	0.911	INTRON Gprk1
3R	8743904	3R_8743904_SNP [dm3] 3R_12918182_SNP [dm6]	G	A	1.864e^-4	0.911	INTRON beat-Vb
3L	13128300	3L_13128300_SNP [dm3] 3L_13135200_SNP [dm6]	T	A	1.866e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	9747463	3R_9747463_SNP [dm3] 3R_13921741_SNP [dm6]	C	A	1.868e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5549696	2L_5549696_SNP [dm3] 2L_5549696_SNP [dm6]	G	C	1.871e^-4	0.911	DOWNSTREAM CG14014 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	2441942	X_2441942_SNP [dm3] X_2547909_SNP [dm6]	C	T	1.875e^-4	0.911	INTERGENIC
2R	14557828	2R_14557828_SNP [dm3] 2R_18670323_SNP [dm6]	G	C	1.877e^-4	0.911	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12653924	2L_12653924_SNP [dm3] 2L_12653924_SNP [dm6]	A	G	1.884e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9746305	2R_9746305_SNP [dm3] 2R_13858800_SNP [dm6]	A	C	1.888e^-4	0.911	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	16808164	2L_16808164_SNP [dm3] 2L_16808164_SNP [dm6]	T	C	1.896e^-4	0.911	INTRON CG13280 & 1 other
3L	7588870	3L_7588870_SNP [dm3] 3L_7595770_SNP [dm6]	C	G	1.914e^-4	0.911	INTRON CG33275
2R	13389295	2R_13389295_SNP [dm3] 2R_17501790_SNP [dm6]	T	A	1.933e^-4	0.911	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26707386	3R_26707386_SNP [dm3] 3R_30881664_SNP [dm6]	G	A	1.938e^-4	0.911	UPSTREAM CG12071 DOWNSTREAM CG15547 INTERGENIC
3R	19923049	3R_19923049_SNP [dm3] 3R_24097327_SNP [dm6]	C	G	1.948e^-4	0.911	INTRON 4EHP
3L	14047543	3L_14047543_SNP [dm3] 3L_14054443_SNP [dm6]	A	C	1.952e^-4	0.911	DOWNSTREAM CG43986 INTRON CG32138
3L	8319564	3L_8319564_SNP [dm3] 3L_8326464_SNP [dm6]	G	A	1.957e^-4	0.911	INTRON CG34461
2L	4702331	2L_4702331_SNP [dm3] 2L_4702331_SNP [dm6]	C	T	1.970e^-4	0.911	UPSTREAM Taf12L INTRON CG34351
3L	19033760	3L_19033760_SNP [dm3] 3L_19040660_SNP [dm6]	A	T	1.978e^-4	0.911	INTRON nkd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6445829	2L_6445829_SNP [dm3] 2L_6445829_SNP [dm6]	A	T	1.987e^-4	0.911	INTRON CG9527	TF binding site mE1_TFBS_cad
X	10926312	X_10926312_SNP [dm3] X_11032279_SNP [dm6]	G	C	1.988e^-4	0.911	INTRON CG42339
3L	14730932	3L_14730932_SNP [dm3] 3L_14737832_SNP [dm6]	A	G	1.992e^-4	0.911	INTRON ome
3R	26717399	3R_26717399_SNP [dm3] 3R_30891677_SNP [dm6]	A	G	1.993e^-4	0.911	INTERGENIC
3L	4894872	3L_4894872_SNP [dm3] 3L_4894872_SNP [dm6]	G	A	1.996e^-4	0.911	INTRON CG17150
3R	26168412	3R_26168412_SNP [dm3] 3R_30342690_SNP [dm6]	A	C	1.997e^-4	0.911	INTRON hdc
3R	3601770	3R_3601770_SNP [dm3] 3R_7776048_SNP [dm6]	G	T	1.998e^-4	0.911	INTERGENIC
2L	11129711	2L_11129711_SNP [dm3] 2L_11129711_SNP [dm6]	C	T	2.005e^-4	0.911	SYNONYMOUS_CODING RfC38 DOWNSTREAM Nup160	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3080597	3L_3080597_SNP [dm3] 3L_3080597_SNP [dm6]	T	C	2.009e^-4	0.911	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	14474027	3L_14474027_SNP [dm3] 3L_14480927_SNP [dm6]	G	A	2.010e^-4	0.911	INTRON bbg
2L	4686248	2L_4686248_SNP [dm3] 2L_4686248_SNP [dm6]	A	T	2.019e^-4	0.911	NON_SYNONYMOUS_CODING CG11929	TF binding site BDTNP1_TFBS_twi
3L	14730893	3L_14730893_INS [dm3] 3L_14737793_INS [dm6]	A	AGAGT	2.021e^-4	0.911	INTRON ome
2R	10714681	2R_10714681_SNP [dm3] 2R_14827176_SNP [dm6]	G	A	2.027e^-4	0.911	INTERGENIC
3L	7206240	3L_7206240_SNP [dm3] 3L_7213140_SNP [dm6]	G	A	2.032e^-4	0.911	INTERGENIC
3L	5884764	3L_5884764_SNP [dm3] 3L_5891664_SNP [dm6]	C	T	2.036e^-4	0.911	INTERGENIC
3R	25324100	3R_25324100_SNP [dm3] 3R_29498378_SNP [dm6]	T	C	2.042e^-4	0.911	SYNONYMOUS_CODING CG2010 DOWNSTREAM Trc8	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	14730886	3L_14730886_SNP [dm3] 3L_14737786_SNP [dm6]	G	T	2.043e^-4	0.911	INTRON ome
X	16497845	X_16497845_SNP [dm3] X_16603812_SNP [dm6]	T	C	2.043e^-4	0.911	SYNONYMOUS_CODING Nup153	TF binding site mE1_TFBS_sens
X	3461303	X_3461303_SNP [dm3] X_3567270_SNP [dm6]	A	T	2.057e^-4	0.911	INTRON CG32791 & 1 other
2L	15027542	2L_15027542_SNP [dm3] 2L_15027542_SNP [dm6]	T	C	2.061e^-4	0.911	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
3L	18491555	3L_18491555_SNP [dm3] 3L_18498455_SNP [dm6]	C	A	2.061e^-4	0.911	INTRON AstC-R2
3R	23852518	3R_23852518_SNP [dm3] 3R_28026796_SNP [dm6]	C	G	2.063e^-4	0.911	UTR_5_PRIME CG34362
3R	13366671	3R_13366671_SNP [dm3] 3R_17540949_SNP [dm6]	C	A	2.068e^-4	0.911	UPSTREAM l_3_07882 INTRON SF1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2813848	2L_2813848_SNP [dm3] 2L_2813848_SNP [dm6]	T	C	2.072e^-4	0.911	SYNONYMOUS_CODING CG2964 DOWNSTREAM CG15400	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12650587	2L_12650587_SNP [dm3] 2L_12650587_SNP [dm6]	G	A	2.072e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18213375	3R_18213375_SNP [dm3] 3R_22387653_SNP [dm6]	C	T	2.079e^-4	0.911	INTRON CG5379
X	16103139	X_16103139_SNP [dm3] X_16209106_SNP [dm6]	T	C	2.083e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_sens
3R	25831171	3R_25831171_SNP [dm3] 3R_30005449_SNP [dm6]	A	G	2.093e^-4	0.911	UPSTREAM CG7911 DOWNSTREAM CG7912 INTRON Nlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	759065	X_759065_SNP [dm3] X_865032_SNP [dm6]	C	A	2.096e^-4	0.911	INTRON CG43867
2R	17575260	2R_17575260_SNP [dm3] 2R_21687755_SNP [dm6]	C	T	2.097e^-4	0.911	UPSTREAM Tbp DOWNSTREAM CG30285 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12386607	2R_12386607_SNP [dm3] 2R_16499102_SNP [dm6]	T	A	2.110e^-4	0.911	INTRON CG7813	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	19630128	2L_19630128_SNP [dm3] 2L_19630128_SNP [dm6]	C	T	2.110e^-4	0.911	INTRON Lar
X	627181	X_627181_INS [dm3] X_733148_INS [dm6]	T	TT	2.119e^-4	0.911	INTRON sdk
3L	19056937	3L_19056937_SNP [dm3] 3L_19063837_SNP [dm6]	T	A	2.121e^-4	0.911	INTRON CG6812	TF binding site BDTNP1_TFBS_hb mE1_TFBS_Trl
3L	13547024	3L_13547024_SNP [dm3] 3L_13553924_SNP [dm6]	C	T	2.132e^-4	0.911	INTRON bru-3
2L	20763378	2L_20763378_SNP [dm3] 2L_20763378_SNP [dm6]	T	A	2.136e^-4	0.911	INTRON dia
2L	560886	2L_560886_SNP [dm3] 2L_560886_SNP [dm6]	C	G	2.141e^-4	0.911	NON_SYNONYMOUS_CODING CG11835 UPSTREAM rempA DOWNSTREAM CG2789	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16408045	2L_16408045_SNP [dm3] 2L_16408045_SNP [dm6]	G	A	2.141e^-4	0.911	INTRON CG5888
3R	12279691	3R_12279691_INS [dm3] 3R_16453969_INS [dm6]	T	TT	2.144e^-4	0.911	UPSTREAM CG10405 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7599267	2R_7599267_SNP [dm3] 2R_11711762_SNP [dm6]	G	A	2.144e^-4	0.911	UPSTREAM pyr INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5847134	3R_5847134_SNP [dm3] 3R_10021412_SNP [dm6]	A	T	2.150e^-4	0.911	START_GAINED Mical UTR_5_PRIME Mical INTRON Mical	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6106886	3L_6106886_SNP [dm3] 3L_6113786_SNP [dm6]	G	A	2.151e^-4	0.911	INTRON Ets65A
2L	12988923	2L_12988923_SNP [dm3] 2L_12988923_SNP [dm6]	G	A	2.160e^-4	0.911	INTERGENIC
3R	19190654	3R_19190654_SNP [dm3] 3R_23364932_SNP [dm6]	C	T	2.169e^-4	0.911	INTERGENIC
3L	3622492	3L_3622492_SNP [dm3] 3L_3622492_SNP [dm6]	C	T	2.176e^-4	0.911	INTERGENIC
3L	9900302	3L_9900302_SNP [dm3] 3L_9907202_SNP [dm6]	A	T	2.182e^-4	0.911	UPSTREAM CG34356 INTERGENIC
3L	19056960	3L_19056960_SNP [dm3] 3L_19063860_SNP [dm6]	T	A	2.184e^-4	0.911	INTRON CG6812	TF binding site BDTNP1_TFBS_hb
2L	14946568	2L_14946568_SNP [dm3] 2L_14946568_SNP [dm6]	G	T	2.185e^-4	0.911	INTRON CG42313
X	9020777	X_9020777_DEL [dm3] X_9126744_DEL [dm6]	TT	T	2.195e^-4	0.911	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	6051322	3L_6051322_SNP [dm3] 3L_6058222_SNP [dm6]	A	C	2.198e^-4	0.911	UPSTREAM CR45441 INTERGENIC
3L	15041078	3L_15041078_SNP [dm3] 3L_15047978_SNP [dm6]	C	A	2.201e^-4	0.911	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	26717406	3R_26717406_SNP [dm3] 3R_30891684_SNP [dm6]	T	G	2.206e^-4	0.911	INTERGENIC
3R	10576617	3R_10576617_SNP [dm3] 3R_14750895_SNP [dm6]	C	T	2.207e^-4	0.911	DOWNSTREAM CG7362 INTRON jvl & 1 other
3L	4576309	3L_4576309_SNP [dm3] 3L_4576309_SNP [dm6]	C	G	2.208e^-4	0.911	INTRON CG42540
2L	19910247	2L_19910247_SNP [dm3] 2L_19910247_SNP [dm6]	C	T	2.218e^-4	0.911	SYNONYMOUS_CODING sick DOWNSTREAM CR43097	TF binding site mE1_TFBS_chinmo
3R	23796902	3R_23796902_SNP [dm3] 3R_27971180_SNP [dm6]	T	C	2.219e^-4	0.911	INTRON betaTub97EF
3L	19026027	3L_19026027_SNP [dm3] 3L_19032927_SNP [dm6]	T	C	2.221e^-4	0.911	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	12108491	3L_12108491_SNP [dm3] 3L_12115391_SNP [dm6]	G	C	2.222e^-4	0.911	UPSTREAM l_3_j2D3 INTERGENIC
3L	14730924	3L_14730924_SNP [dm3] 3L_14737824_SNP [dm6]	C	T	2.223e^-4	0.911	INTRON ome
X	7960978	X_7960978_SNP [dm3] X_8066945_SNP [dm6]	C	T	2.226e^-4	0.911	INTRON mys
3L	3080402	3L_3080402_SNP [dm3] 3L_3080402_SNP [dm6]	C	A	2.227e^-4	0.911	INTRON CG11486	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	13546073	3L_13546073_SNP [dm3] 3L_13552973_SNP [dm6]	C	T	2.230e^-4	0.911	INTRON bru-3
2L	10096695	2L_10096695_SNP [dm3] 2L_10096695_SNP [dm6]	G	A	2.234e^-4	0.911	INTRON CG44153 & 1 other
3L	6106926	3L_6106926_SNP [dm3] 3L_6113826_SNP [dm6]	A	C	2.241e^-4	0.911	INTRON Ets65A
X	16583098	X_16583098_SNP [dm3] X_16689065_SNP [dm6]	T	C	2.249e^-4	0.911	INTRON Sep4
2R	1311000	2R_1311000_SNP [dm3] 2R_5423495_SNP [dm6]	T	C	2.253e^-4	0.911	INTRON laccase2	transposable element FlyBase
2R	16155689	2R_16155689_SNP [dm3] 2R_20268184_SNP [dm6]	C	T	2.254e^-4	0.911	SYNONYMOUS_CODING CG8908	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5568859	2R_5568859_SNP [dm3] 2R_9681354_SNP [dm6]	A	C	2.258e^-4	0.911	INTRON Mmp2
3L	6096979	3L_6096979_SNP [dm3] 3L_6103879_SNP [dm6]	A	G	2.260e^-4	0.911	INTRON Ets65A
2L	10590254	2L_10590254_SNP [dm3] 2L_10590254_SNP [dm6]	A	C	2.263e^-4	0.911	INTRON Trim9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	10590284	2L_10590284_SNP [dm3] 2L_10590284_SNP [dm6]	C	T	2.263e^-4	0.911	INTRON Trim9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	14730938	3L_14730938_DEL [dm3] 3L_14737838_DEL [dm6]	AA	A	2.267e^-4	0.911	INTRON ome
3R	6970984	3R_6970984_SNP [dm3] 3R_11145262_SNP [dm6]	T	A	2.267e^-4	0.911	UPSTREAM CheA86a INTERGENIC
3L	6109697	3L_6109697_DEL [dm3] 3L_6116597_DEL [dm6]	CC	C	2.271e^-4	0.911	INTRON Ets65A	TF binding site mE1_TFBS_Kr
3L	10161026	3L_10161026_SNP [dm3] 3L_10167926_SNP [dm6]	A	G	2.272e^-4	0.911	UPSTREAM CG6628 INTRON dpr10
3L	19056921	3L_19056921_SNP [dm3] 3L_19063821_SNP [dm6]	G	C	2.286e^-4	0.911	INTRON CG6812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Trl
2L	12653578	2L_12653578_SNP [dm3] 2L_12653578_SNP [dm6]	A	G	2.288e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13629451	3L_13629451_SNP [dm3] 3L_13636351_SNP [dm6]	G	T	2.290e^-4	0.911	INTRON bru-3
2R	1990634	2R_1990634_SNP [dm3] 2R_6103129_SNP [dm6]	C	G	2.295e^-4	0.911	INTRON EcR	TF binding site mE1_TFBS_Trl
X	17612318	X_17612318_INS [dm3] X_17718285_INS [dm6]	G	GGTG	2.298e^-4	0.911	INTRON CG42684	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	5549711	2L_5549711_SNP [dm3] 2L_5549711_SNP [dm6]	C	T	2.298e^-4	0.911	UTR_3_PRIME CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	14730917	3L_14730917_SNP [dm3] 3L_14737817_SNP [dm6]	T	A	2.309e^-4	0.911	INTRON ome
3R	7186756	3R_7186756_SNP [dm3] 3R_11361034_SNP [dm6]	A	G	2.317e^-4	0.911	INTRON pros	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	3308087	X_3308087_SNP [dm3] X_3414054_SNP [dm6]	C	T	2.334e^-4	0.911	INTRON CR44999 & 1 other
2R	11402304	2R_11402304_SNP [dm3] 2R_15514799_SNP [dm6]	A	C	2.346e^-4	0.911	SYNONYMOUS_CODING GalNAc-T1 DOWNSTREAM Khc-73
3L	9279329	3L_9279329_SNP [dm3] 3L_9286229_SNP [dm6]	G	T	2.352e^-4	0.911	UTR_3_PRIME GluRIB
X	22330423	X_22330423_SNP [dm3] X_22928587_SNP [dm6]	G	C	2.352e^-4	0.911	INTERGENIC
3R	13991268	3R_13991268_SNP [dm3] 3R_18165546_SNP [dm6]	T	C	2.359e^-4	0.911	UTR_3_PRIME Prx5 & 1 other DOWNSTREAM Cbp20	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
2L	5587734	2L_5587734_SNP [dm3] 2L_5587734_SNP [dm6]	C	T	2.362e^-4	0.911	SYNONYMOUS_CODING CG7251
3R	3494006	3R_3494006_SNP [dm3] 3R_7668284_SNP [dm6]	T	C	2.370e^-4	0.911	INTRON Nlg1
2L	9414593	2L_9414593_SNP [dm3] 2L_9414593_SNP [dm6]	G	C	2.377e^-4	0.911	INTRON Shawl
2L	22127963	2L_22127963_SNP [dm3] 2L_22127963_SNP [dm6]	G	T	2.378e^-4	0.911	UTR_3_PRIME CycK DOWNSTREAM CycK	transposable element FlyBase
3R	5847177	3R_5847177_SNP [dm3] 3R_10021455_SNP [dm6]	A	G	2.383e^-4	0.911	UTR_5_PRIME Mical INTRON Mical	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	14485753	2L_14485753_SNP [dm3] 2L_14485753_SNP [dm6]	C	A	2.386e^-4	0.911	UPSTREAM CR44731 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19056938	3L_19056938_SNP [dm3] 3L_19063838_SNP [dm6]	T	A	2.396e^-4	0.911	INTRON CG6812	TF binding site BDTNP1_TFBS_hb mE1_TFBS_Trl
3L	13545397	3L_13545397_SNP [dm3] 3L_13552297_SNP [dm6]	G	A	2.400e^-4	0.911	INTRON bru-3
2L	9401038	2L_9401038_SNP [dm3] 2L_9401038_SNP [dm6]	A	C	2.401e^-4	0.911	INTRON Shawl
2R	17459478	2R_17459478_SNP [dm3] 2R_21571973_SNP [dm6]	A	T	2.403e^-4	0.911	UPSTREAM CG10440 INTRON CG10440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17575500	2R_17575500_SNP [dm3] 2R_21687995_SNP [dm6]	A	G	2.408e^-4	0.911	UTR_3_PRIME CG30285 UPSTREAM Tbp & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
X	11825092	X_11825092_SNP [dm3] X_11931059_SNP [dm6]	T	C	2.408e^-4	0.911	UPSTREAM CG10362 DOWNSTREAM cac INTERGENIC
3R	3852721	3R_3852721_SNP [dm3] 3R_8026999_SNP [dm6]	A	T	2.411e^-4	0.911	UTR_5_PRIME CG2747 INTRON CG2747	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8321468	3L_8321468_INS [dm3] 3L_8328368_INS [dm6]	T	TAT	2.421e^-4	0.911	UPSTREAM CG34462 DOWNSTREAM CG34461 INTERGENIC
2L	19685860	2L_19685860_SNP [dm3] 2L_19685860_SNP [dm6]	C	T	2.424e^-4	0.911	INTRON Lar
3R	25259004	3R_25259004_SNP [dm3] 3R_29433282_SNP [dm6]	C	G	2.428e^-4	0.911	INTRON Ptp99A
X	751802	X_751802_SNP [dm3] X_857769_SNP [dm6]	A	G	2.437e^-4	0.911	INTRON CG43867	TF binding site mE1_TFBS_chinmo
2R	13510544	2R_13510544_SNP [dm3] 2R_17623039_SNP [dm6]	C	T	2.445e^-4	0.911	INTRON CG10936
3L	15589560	3L_15589560_SNP [dm3] 3L_15596460_SNP [dm6]	C	T	2.448e^-4	0.911	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	6326038	2R_6326038_SNP [dm3] 2R_10438533_SNP [dm6]	G	T	2.452e^-4	0.911	UPSTREAM Galphao INTRON Galphao	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Trl
3R	26679493	3R_26679493_SNP [dm3] 3R_30853771_SNP [dm6]	C	G	2.455e^-4	0.911	SYNONYMOUS_CODING tll	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19359439	X_19359439_SNP [dm3] X_19465406_SNP [dm6]	G	T	2.468e^-4	0.911	NON_SYNONYMOUS_CODING kek5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3269946	2R_3269946_SNP [dm3] 2R_7382441_SNP [dm6]	G	A	2.470e^-4	0.911	UTR_3_PRIME cos UPSTREAM Dscam1 DOWNSTREAM cos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	4475095	2L_4475095_SNP [dm3] 2L_4475095_SNP [dm6]	T	C	2.472e^-4	0.911	UTR_5_PRIME ine	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13127933	3L_13127933_SNP [dm3] 3L_13134833_SNP [dm6]	T	G	2.472e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	12663646	2R_12663646_SNP [dm3] 2R_16776141_SNP [dm6]	A	T	2.475e^-4	0.911	DOWNSTREAM Arp53D INTERGENIC
3L	11253093	3L_11253093_SNP [dm3] 3L_11259993_SNP [dm6]	A	T	2.479e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19480650	3R_19480650_SNP [dm3] 3R_23654928_SNP [dm6]	G	A	2.479e^-4	0.911	INTRON CG31145
3L	15048845	3L_15048845_SNP [dm3] 3L_15055745_SNP [dm6]	C	T	2.481e^-4	0.911	DOWNSTREAM CG13463 INTRON Sytbeta
2R	13341779	2R_13341779_SNP [dm3] 2R_17454274_SNP [dm6]	A	G	2.484e^-4	0.911	NON_SYNONYMOUS_CODING CG10764	TF binding site mE1_TFBS_sens
3L	6179308	3L_6179308_SNP [dm3] 3L_6186208_SNP [dm6]	G	A	2.488e^-4	0.911	UTR_3_PRIME D19A DOWNSTREAM CG43293	TF binding site mE1_TFBS_cad
2L	2545975	2L_2545975_SNP [dm3] 2L_2545975_SNP [dm6]	T	A	2.490e^-4	0.911	INTERGENIC
2R	17287190	2R_17287190_SNP [dm3] 2R_21399685_SNP [dm6]	C	G	2.493e^-4	0.911	INTRON Sdc
2L	11173857	2L_11173857_SNP [dm3] 2L_11173857_SNP [dm6]	G	T	2.494e^-4	0.911	INTRON Ca-beta	TF binding site mE1_TFBS_HSA
X	814115	X_814115_SNP [dm3] X_920082_SNP [dm6]	G	A	2.494e^-4	0.911	INTRON CG43867
2L	18927621	2L_18927621_SNP [dm3] 2L_18927621_SNP [dm6]	T	A	2.494e^-4	0.911	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	11404168	2R_11404168_SNP [dm3] 2R_15516663_SNP [dm6]	G	A	2.498e^-4	0.911	UTR_3_PRIME Khc-73
2L	8208433	2L_8208433_SNP [dm3] 2L_8208433_SNP [dm6]	C	T	2.510e^-4	0.911	INTRON CG8419	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	12279452	3L_12279452_SNP [dm3] 3L_12286352_SNP [dm6]	G	C	2.523e^-4	0.911	INTERGENIC
3L	14155654	3L_14155654_SNP [dm3] 3L_14162554_SNP [dm6]	A	C	2.525e^-4	0.911	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25814223	3R_25814223_SNP [dm3] 3R_29988501_SNP [dm6]	A	G	2.525e^-4	0.911	SYNONYMOUS_CODING CG7896	TF binding site mE1_TFBS_chinmo
X	1985435	X_1985435_SNP [dm3] X_2091402_SNP [dm6]	G	A	2.526e^-4	0.911	NON_SYNONYMOUS_CODING Unc-76	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25814181	3R_25814181_SNP [dm3] 3R_29988459_SNP [dm6]	T	C	2.527e^-4	0.911	SYNONYMOUS_CODING CG7896	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	20857363	3L_20857363_SNP [dm3] 3L_20864263_SNP [dm6]	A	C	2.531e^-4	0.911	INTRON CG32432
3L	2815102	3L_2815102_SNP [dm3] 3L_2815102_SNP [dm6]	T	G	2.532e^-4	0.911	INTRON CG43444
2L	9406278	2L_9406278_SNP [dm3] 2L_9406278_SNP [dm6]	G	A	2.539e^-4	0.911	INTRON Shawl
X	2747787	X_2747787_SNP [dm3] X_2853754_SNP [dm6]	G	A	2.543e^-4	0.911	INTRON kirre
3L	21607297	3L_21607297_SNP [dm3] 3L_21614197_SNP [dm6]	A	T	2.556e^-4	0.911	NON_SYNONYMOUS_CODING S1P DOWNSTREAM TfAP-2
3L	643602	3L_643602_SNP [dm3] 3L_643602_SNP [dm6]	A	G	2.559e^-4	0.911	EXON CR43334
2R	16363329	2R_16363329_SNP [dm3] 2R_20475824_SNP [dm6]	C	A	2.566e^-4	0.911	INTRON CG12484
3L	7870627	3L_7870627_SNP [dm3] 3L_7877527_SNP [dm6]	G	A	2.567e^-4	0.911	INTRON CG32365	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23798450	3R_23798450_SNP [dm3] 3R_27972728_SNP [dm6]	G	A	2.570e^-4	0.911	INTRON betaTub97EF
X	11825089	X_11825089_SNP [dm3] X_11931056_SNP [dm6]	C	G	2.578e^-4	0.911	UPSTREAM CG10362 DOWNSTREAM cac INTERGENIC
3L	15063197	3L_15063197_SNP [dm3] 3L_15070097_SNP [dm6]	T	G	2.581e^-4	0.911	SYNONYMOUS_CODING cp309	TF binding site mE1_TFBS_cad
2R	16041616	2R_16041616_SNP [dm3] 2R_20154111_SNP [dm6]	C	G	2.582e^-4	0.911	INTERGENIC
2L	4095373	2L_4095373_SNP [dm3] 2L_4095373_SNP [dm6]	T	C	2.592e^-4	0.911	INTRON ed	TF binding site BDTNP1_TFBS_twi
2L	20718615	2L_20718615_SNP [dm3] 2L_20718615_SNP [dm6]	T	G	2.599e^-4	0.911	INTERGENIC
2L	6652719	2L_6652719_DEL [dm3] 2L_6652719_DEL [dm6]	TT	T	2.607e^-4	0.911	INTRON Tango1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14102067	3R_14102067_DEL [dm3] 3R_18276345_DEL [dm6]	AC	A	2.611e^-4	0.911	INTRON eIF-1A	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14730873	3L_14730873_SNP [dm3] 3L_14737773_SNP [dm6]	A	G	2.612e^-4	0.911	INTRON ome
X	10927425	X_10927425_SNP [dm3] X_11033392_SNP [dm6]	G	C	2.613e^-4	0.911	INTRON CG42339
3R	18718212	3R_18718212_SNP [dm3] 3R_22892490_SNP [dm6]	C	T	2.616e^-4	0.911	INTERGENIC
X	813634	X_813634_SNP [dm3] X_919601_SNP [dm6]	G	A	2.624e^-4	0.911	INTRON CG43867
X	8547501	X_8547501_SNP [dm3] X_8653468_SNP [dm6]	G	A	2.636e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	753615	X_753615_SNP [dm3] X_859582_SNP [dm6]	G	C	2.639e^-4	0.911	INTRON CG43867
2L	20768730	2L_20768730_SNP [dm3] 2L_20768730_SNP [dm6]	G	C	2.647e^-4	0.911	DOWNSTREAM dia INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26717408	3R_26717408_INS [dm3] 3R_30891686_INS [dm6]	A	AAACTCAGTAGGGCTGCAAT...	2.649e^-4	0.911	INTERGENIC
3L	19033715	3L_19033715_SNP [dm3] 3L_19040615_SNP [dm6]	A	T	2.651e^-4	0.911	INTRON nkd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	13510186	X_13510186_SNP [dm3] X_13616153_SNP [dm6]	T	C	2.652e^-4	0.911	UTR_5_PRIME tth UPSTREAM Tango2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	12938983	X_12938983_SNP [dm3] X_13044950_SNP [dm6]	G	A	2.658e^-4	0.911	INTRON rad
2L	15826846	2L_15826846_SNP [dm3] 2L_15826846_SNP [dm6]	T	C	2.665e^-4	0.911	INTERGENIC
3L	14730919	3L_14730919_SNP [dm3] 3L_14737819_SNP [dm6]	A	C	2.670e^-4	0.911	INTRON ome
2L	4017060	2L_4017060_SNP [dm3] 2L_4017060_SNP [dm6]	T	C	2.672e^-4	0.911	INTERGENIC
3L	9758656	3L_9758656_SNP [dm3] 3L_9765556_SNP [dm6]	T	A	2.682e^-4	0.911	INTRON CG8177
3L	14730905	3L_14730905_DEL [dm3] 3L_14737805_DEL [dm6]	TTGTAA	T	2.682e^-4	0.911	INTRON ome
2L	6194646	2L_6194646_SNP [dm3] 2L_6194646_SNP [dm6]	G	C	2.698e^-4	0.911	INTRON CG34380	TF binding site mE1_TFBS_chinmo
X	17629543	X_17629543_SNP [dm3] X_17735510_SNP [dm6]	T	G	2.702e^-4	0.911	INTRON CG42684	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19918588	X_19918588_SNP [dm3] X_20024555_SNP [dm6]	G	T	2.702e^-4	0.911	UPSTREAM tRNA:CR32826 INTRON Dop2R	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12386563	2R_12386563_SNP [dm3] 2R_16499058_SNP [dm6]	T	A	2.704e^-4	0.911	INTRON CG7813	TF binding site BDTNP1_TFBS_dl
2L	13068871	2L_13068871_SNP [dm3] 2L_13068871_SNP [dm6]	C	T	2.710e^-4	0.911	INTERGENIC
3L	276792	3L_276792_SNP [dm3] 3L_276792_SNP [dm6]	C	A	2.724e^-4	0.911	UPSTREAM RhoGEF3 DOWNSTREAM ttm2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9406767	2L_9406767_SNP [dm3] 2L_9406767_SNP [dm6]	G	A	2.725e^-4	0.911	INTRON Shawl
2L	15971241	2L_15971241_SNP [dm3] 2L_15971241_SNP [dm6]	G	T	2.730e^-4	0.911	INTERGENIC
2L	12931344	2L_12931344_SNP [dm3] 2L_12931344_SNP [dm6]	A	G	2.737e^-4	0.911	UPSTREAM CR44183 INTERGENIC
2L	16408046	2L_16408046_SNP [dm3] 2L_16408046_SNP [dm6]	A	T	2.743e^-4	0.911	INTRON CG5888
3R	25671268	3R_25671268_SNP [dm3] 3R_29845546_SNP [dm6]	A	T	2.748e^-4	0.911	INTRON Cad99C
X	753544	X_753544_SNP [dm3] X_859511_SNP [dm6]	C	T	2.751e^-4	0.911	INTRON CG43867
3R	14678916	3R_14678916_SNP [dm3] 3R_18853194_SNP [dm6]	T	G	2.755e^-4	0.911	INTERGENIC
3L	4982003	3L_4982003_DEL [dm3] 3L_4982003_DEL [dm6]	TT	T	2.755e^-4	0.911	DOWNSTREAM CR45685 INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14616451	X_14616451_SNP [dm3] X_14722418_SNP [dm6]	G	A	2.756e^-4	0.911	INTRON NetB
2L	8713145	2L_8713145_SNP [dm3] 2L_8713145_SNP [dm6]	T	G	2.773e^-4	0.911	SYNONYMOUS_CODING raw
3L	10161028	3L_10161028_DEL [dm3] 3L_10167928_DEL [dm6]	AT	A	2.775e^-4	0.911	UPSTREAM CG6628 INTRON dpr10
3R	20534764	3R_20534764_SNP [dm3] 3R_24709042_SNP [dm6]	T	A	2.777e^-4	0.911	UTR_3_PRIME slo DOWNSTREAM slo
2L	13171123	2L_13171123_SNP [dm3] 2L_13171123_SNP [dm6]	T	A	2.786e^-4	0.911	INTRON Sfmbt
2L	11213083	2L_11213083_SNP [dm3] 2L_11213083_SNP [dm6]	G	T	2.789e^-4	0.911	INTRON ab
2L	20727712	2L_20727712_SNP [dm3] 2L_20727712_SNP [dm6]	A	G	2.792e^-4	0.911	SYNONYMOUS_CODING CG9317
2R	17586787	2R_17586787_SNP [dm3] 2R_21699282_SNP [dm6]	C	T	2.812e^-4	0.911	INTRON HmgZ	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1235273	2L_1235273_SNP [dm3] 2L_1235273_SNP [dm6]	G	A	2.815e^-4	0.911	INTERGENIC
3L	6053384	3L_6053384_SNP [dm3] 3L_6060284_SNP [dm6]	A	G	2.815e^-4	0.911	SYNONYMOUS_CODING CG6592 DOWNSTREAM CR45441	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	20332036	3R_20332036_SNP [dm3] 3R_24506314_SNP [dm6]	A	G	2.817e^-4	0.911	INTERGENIC
3L	7065442	3L_7065442_INS [dm3] 3L_7072342_INS [dm6]	A	ACAATA	2.819e^-4	0.911	INTRON CG8641
2L	15011266	2L_15011266_SNP [dm3] 2L_15011266_SNP [dm6]	C	T	2.826e^-4	0.911	DOWNSTREAM CR43856 INTRON l_2_35Bd	TF binding site mE1_TFBS_cad
3R	24033638	3R_24033638_SNP [dm3] 3R_28207916_SNP [dm6]	C	T	2.838e^-4	0.911	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	812701	X_812701_SNP [dm3] X_918668_SNP [dm6]	G	A	2.843e^-4	0.911	INTRON CG43867
3L	19056958	3L_19056958_SNP [dm3] 3L_19063858_SNP [dm6]	A	C	2.848e^-4	0.911	INTRON CG6812	TF binding site BDTNP1_TFBS_hb
2L	4702340	2L_4702340_SNP [dm3] 2L_4702340_SNP [dm6]	A	C	2.854e^-4	0.911	UPSTREAM Taf12L INTRON CG34351
3L	19057018	3L_19057018_DEL [dm3] 3L_19063918_DEL [dm6]	GTG	G	2.855e^-4	0.911	INTRON CG6812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	4894801	3L_4894801_SNP [dm3] 3L_4894801_SNP [dm6]	T	A	2.858e^-4	0.911	INTRON CG17150
3R	8742112	3R_8742112_SNP [dm3] 3R_12916390_SNP [dm6]	T	G	2.860e^-4	0.911	UTR_5_PRIME beat-Vb INTRON beat-Vb
3L	4982020	3L_4982020_SNP [dm3] 3L_4982020_SNP [dm6]	A	C	2.875e^-4	0.911	DOWNSTREAM CR45685 INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19128877	3L_19128877_SNP [dm3] 3L_19135777_SNP [dm6]	T	G	2.876e^-4	0.911	INTRON CG14082
2L	14349466	2L_14349466_SNP [dm3] 2L_14349466_SNP [dm6]	G	A	2.877e^-4	0.911	SYNONYMOUS_CODING l_2_34Fc UPSTREAM mTTF EXON CR44850
2R	4470802	2R_4470802_SNP [dm3] 2R_8583297_SNP [dm6]	T	A	2.881e^-4	0.911	INTRON CG42326
3R	825441	3R_825441_SNP [dm3] 3R_4999719_SNP [dm6]	T	A	2.882e^-4	0.911	INTRON CG2022	TF binding site mE1_TFBS_kn
3L	6989113	3L_6989113_SNP [dm3] 3L_6996013_SNP [dm6]	C	A	2.884e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
2L	2654358	2L_2654358_SNP [dm3] 2L_2654358_SNP [dm6]	T	A	2.886e^-4	0.911	SYNONYMOUS_CODING Or23a DOWNSTREAM Prosbeta4R1
2R	20044097	2R_20044097_SNP [dm3] 2R_24156574_SNP [dm6]	C	T	2.886e^-4	0.911	INTRON Dat	TF binding site mE1_TFBS_chinmo
2L	11209642	2L_11209642_DEL [dm3] 2L_11209642_DEL [dm6]	GGCGGCTACTGCG...	G	2.891e^-4	0.911	INTERGENIC
3L	6109601	3L_6109601_SNP [dm3] 3L_6116501_SNP [dm6]	T	G	2.901e^-4	0.911	INTRON Ets65A	TF binding site mE1_TFBS_Kr
3L	19056224	3L_19056224_SNP [dm3] 3L_19063124_SNP [dm6]	T	C	2.906e^-4	0.911	UPSTREAM CG6812 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
X	8720297	X_8720297_SNP [dm3] X_8826264_SNP [dm6]	G	A	2.912e^-4	0.911	INTERGENIC
X	3922966	X_3922966_INS [dm3] X_4028933_INS [dm6]	C	CACATGTGTTCAAATTTACA...	2.918e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17565814	2R_17565814_SNP [dm3] 2R_21678309_SNP [dm6]	C	T	2.920e^-4	0.911	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2132218	2R_2132218_SNP [dm3] 2R_6244713_SNP [dm6]	T	A	2.926e^-4	0.911	UPSTREAM Pld INTRON Pld
3L	18890026	3L_18890026_SNP [dm3] 3L_18896926_SNP [dm6]	G	C	2.928e^-4	0.911	UPSTREAM snoRNA:Psi28S-2566 INTRON CG3902	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	12666835	2L_12666835_SNP [dm3] 2L_12666835_SNP [dm6]	C	T	2.934e^-4	0.911	DOWNSTREAM CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6052261	3L_6052261_SNP [dm3] 3L_6059161_SNP [dm6]	T	C	2.935e^-4	0.911	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2R	11646429	2R_11646429_SNP [dm3] 2R_15758924_SNP [dm6]	A	G	2.943e^-4	0.911	INTRON CG30089
3L	6106898	3L_6106898_SNP [dm3] 3L_6113798_SNP [dm6]	A	T	2.968e^-4	0.911	INTRON Ets65A
3R	24545244	3R_24545244_SNP [dm3] 3R_28719522_SNP [dm6]	A	G	2.973e^-4	0.911	INTRON htt	TF binding site mE1_TFBS_chinmo
2R	6530708	2R_6530708_SNP [dm3] 2R_10643203_SNP [dm6]	G	A	2.976e^-4	0.911	INTRON Git	TF binding site mE1_TFBS_HSA
2R	16925960	2R_16925960_SNP [dm3] 2R_21038455_SNP [dm6]	C	A	2.979e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	1278550	3R_1278550_SNP [dm3] 3R_5452828_SNP [dm6]	A	G	2.982e^-4	0.911	INTRON CG14669	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19128878	3L_19128878_SNP [dm3] 3L_19135778_SNP [dm6]	T	A	2.982e^-4	0.911	INTRON CG14082
3L	6053382	3L_6053382_SNP [dm3] 3L_6060282_SNP [dm6]	T	C	2.982e^-4	0.911	SYNONYMOUS_CODING CG6592 DOWNSTREAM CR45441	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	17356851	2R_17356851_SNP [dm3] 2R_21469346_SNP [dm6]	C	T	2.994e^-4	0.911	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2L	12370476	2L_12370476_SNP [dm3] 2L_12370476_SNP [dm6]	A	G	2.994e^-4	0.911	INTRON bru-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15067533	2R_15067533_SNP [dm3] 2R_19180028_SNP [dm6]	A	C	2.995e^-4	0.911	INTRON hppy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	6765025	2R_6765025_SNP [dm3] 2R_10877520_SNP [dm6]	G	A	2.998e^-4	0.911	SYNONYMOUS_CODING Taf5 DOWNSTREAM nclb	TF binding site mE1_TFBS_cad
2R	6765026	2R_6765026_SNP [dm3] 2R_10877521_SNP [dm6]	G	C	2.998e^-4	0.911	SYNONYMOUS_CODING Taf5 DOWNSTREAM nclb	TF binding site mE1_TFBS_cad
3R	13998308	3R_13998308_SNP [dm3] 3R_18172586_SNP [dm6]	T	G	2.998e^-4	0.911	UPSTREAM PP2A-B' INTRON PP2A-B'	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	13068717	2L_13068717_SNP [dm3] 2L_13068717_SNP [dm6]	T	C	3.002e^-4	0.911	INTERGENIC
2L	4051154	2L_4051154_SNP [dm3] 2L_4051154_SNP [dm6]	T	A	3.006e^-4	0.911	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3461271	X_3461271_SNP [dm3] X_3567238_SNP [dm6]	C	G	3.013e^-4	0.911	INTRON CG32791 & 1 other
3R	4212974	3R_4212974_SNP [dm3] 3R_8387252_SNP [dm6]	T	C	3.022e^-4	0.911	SYNONYMOUS_CODING CG45263 INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22228412	3R_22228412_SNP [dm3] 3R_26402690_SNP [dm6]	G	A	3.022e^-4	0.911	SYNONYMOUS_CODING ppk15
2R	18978494	2R_18978494_SNP [dm3] 2R_23090971_SNP [dm6]	C	T	3.024e^-4	0.911	SYNONYMOUS_CODING CG9876	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	15885004	2L_15885004_INS [dm3] 2L_15885004_INS [dm6]	G	GACTTGATGACTTGA...	3.029e^-4	0.911	INTERGENIC
3L	6110484	3L_6110484_SNP [dm3] 3L_6117384_SNP [dm6]	A	G	3.038e^-4	0.911	INTRON Ets65A
3L	13514396	3L_13514396_SNP [dm3] 3L_13521296_SNP [dm6]	C	T	3.040e^-4	0.911	DOWNSTREAM bru-3 INTERGENIC
2R	14992474	2R_14992474_DEL [dm3] 2R_19104969_DEL [dm6]	AATGAAATTTACTTTGCTTT...	A	3.041e^-4	0.911	INTRON 5-HT1A
3L	6054907	3L_6054907_SNP [dm3] 3L_6061807_SNP [dm6]	G	A	3.047e^-4	0.911	DOWNSTREAM CG6592 INTRON CG10472
X	2448055	X_2448055_SNP [dm3] X_2554022_SNP [dm6]	A	G	3.050e^-4	0.911	UPSTREAM Pdfr INTRON Pdfr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8997437	2L_8997437_SNP [dm3] 2L_8997437_SNP [dm6]	A	G	3.059e^-4	0.911	UPSTREAM CG18661 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
2L	8138485	2L_8138485_SNP [dm3] 2L_8138485_SNP [dm6]	C	A	3.064e^-4	0.911	SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3461292	X_3461292_SNP [dm3] X_3567259_SNP [dm6]	T	G	3.065e^-4	0.911	INTRON CG32791 & 1 other
3R	26717405	3R_26717405_SNP [dm3] 3R_30891683_SNP [dm6]	T	A	3.066e^-4	0.911	INTERGENIC
3R	25814625	3R_25814625_SNP [dm3] 3R_29988903_SNP [dm6]	A	G	3.072e^-4	0.911	SYNONYMOUS_CODING CG7896	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	3461296	X_3461296_SNP [dm3] X_3567263_SNP [dm6]	T	G	3.081e^-4	0.911	INTRON CG32791 & 1 other
2R	19274998	2R_19274998_SNP [dm3] 2R_23387475_SNP [dm6]	G	C	3.085e^-4	0.911	NON_SYNONYMOUS_CODING eIF2B-delta	TF binding site mE1_TFBS_sens
3R	13998170	3R_13998170_SNP [dm3] 3R_18172448_SNP [dm6]	C	A	3.086e^-4	0.911	UPSTREAM PP2A-B' INTRON PP2A-B'	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	14629167	3L_14629167_DEL [dm3] 3L_14636067_DEL [dm6]	CGC	C	3.098e^-4	0.911	INTRON dlp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	19453062	2R_19453062_SNP [dm3] 2R_23565539_SNP [dm6]	G	A	3.103e^-4	0.911	DOWNSTREAM CG30184 INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12333925	3L_12333925_SNP [dm3] 3L_12340825_SNP [dm6]	T	C	3.109e^-4	0.911	INTRON CrzR
3R	26717431	3R_26717431_SNP [dm3] 3R_30891709_SNP [dm6]	T	C	3.121e^-4	0.911	INTERGENIC
3L	14730888	3L_14730888_SNP [dm3] 3L_14737788_SNP [dm6]	T	A	3.126e^-4	0.911	INTRON ome
3L	10162977	3L_10162977_SNP [dm3] 3L_10169877_SNP [dm6]	A	T	3.135e^-4	0.911	INTRON dpr10
2L	12922438	2L_12922438_SNP [dm3] 2L_12922438_SNP [dm6]	C	T	3.138e^-4	0.911	SYNONYMOUS_CODING ACXA
2L	19470827	2L_19470827_SNP [dm3] 2L_19470827_SNP [dm6]	G	A	3.140e^-4	0.911	UPSTREAM CR45723 DOWNSTREAM CR43839 & 1 other INTERGENIC
2L	18927626	2L_18927626_SNP [dm3] 2L_18927626_SNP [dm6]	C	T	3.155e^-4	0.911	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	2747756	X_2747756_SNP [dm3] X_2853723_SNP [dm6]	G	A	3.166e^-4	0.911	INTRON kirre
2R	3656950	2R_3656950_SNP [dm3] 2R_7769445_SNP [dm6]	C	T	3.172e^-4	0.911	INTRON CG30497 & 1 other
X	11825129	X_11825129_SNP [dm3] X_11931096_SNP [dm6]	A	G	3.187e^-4	0.911	UPSTREAM CG10362 DOWNSTREAM cac INTERGENIC
X	9188557	X_9188557_DEL [dm3] X_9294524_DEL [dm6]	AAAATGATA	A	3.193e^-4	0.911	INTRON lz	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7206253	3L_7206253_SNP [dm3] 3L_7213153_SNP [dm6]	G	C	3.194e^-4	0.911	INTERGENIC
2L	13125776	2L_13125776_SNP [dm3] 2L_13125776_SNP [dm6]	T	G	3.199e^-4	0.911	INTERGENIC
3L	13640936	3L_13640936_SNP [dm3] 3L_13647836_SNP [dm6]	C	G	3.203e^-4	0.911	INTRON bru-3
3L	14759517	3L_14759517_SNP [dm3] 3L_14766417_SNP [dm6]	T	C	3.213e^-4	0.911	UTR_3_PRIME CG9384
2R	20062798	2R_20062798_SNP [dm3] 2R_24175275_SNP [dm6]	T	G	3.224e^-4	0.911	SYNONYMOUS_CODING Nop60B UPSTREAM mRpS17 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6110403	3L_6110403_SNP [dm3] 3L_6117303_SNP [dm6]	G	C	3.231e^-4	0.911	INTRON Ets65A
3L	19045980	3L_19045980_SNP [dm3] 3L_19052880_SNP [dm6]	T	G	3.234e^-4	0.911	UPSTREAM Acp76A DOWNSTREAM CG43407 & 1 other INTERGENIC
3L	19033739	3L_19033739_SNP [dm3] 3L_19040639_SNP [dm6]	C	G	3.235e^-4	0.911	INTRON nkd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	3604494	X_3604494_SNP [dm3] X_3710461_SNP [dm6]	A	C	3.239e^-4	0.911	INTRON Rala
2R	15410397	2R_15410397_DEL [dm3] 2R_19522892_DEL [dm6]	TAATC	G	3.242e^-4	0.911	UTR_3_PRIME sm DOWNSTREAM sm
3L	9034387	3L_9034387_SNP [dm3] 3L_9041287_SNP [dm6]	G	A	3.254e^-4	0.911	UPSTREAM Doc1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17005920	2R_17005920_SNP [dm3] 2R_21118415_SNP [dm6]	C	T	3.259e^-4	0.911	UTR_5_PRIME CG9394 UPSTREAM CG9394 INTRON ktub	TF binding site mE1_TFBS_cad
2L	16408265	2L_16408265_SNP [dm3] 2L_16408265_SNP [dm6]	G	A	3.261e^-4	0.911	INTRON CG5888
3L	6054646	3L_6054646_SNP [dm3] 3L_6061546_SNP [dm6]	G	A	3.263e^-4	0.911	SYNONYMOUS_CODING CG10472 DOWNSTREAM CG6592
3L	6039447	3L_6039447_SNP [dm3] 3L_6046347_SNP [dm6]	A	T	3.265e^-4	0.911	INTERGENIC
3L	6053480	3L_6053480_SNP [dm3] 3L_6060380_SNP [dm6]	T	C	3.268e^-4	0.911	SYNONYMOUS_CODING CG6592 DOWNSTREAM CR45441 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	17926236	3L_17926236_SNP [dm3] 3L_17933136_SNP [dm6]	G	T	3.270e^-4	0.911	UPSTREAM CG43173 & 1 other INTERGENIC
3R	13976440	3R_13976440_SNP [dm3] 3R_18150718_SNP [dm6]	A	G	3.274e^-4	0.911	INTERGENIC
2L	9614830	2L_9614830_SNP [dm3] 2L_9614830_SNP [dm6]	A	C	3.280e^-4	0.911	INTRON Trx-2
2R	13939048	2R_13939048_SNP [dm3] 2R_18051543_SNP [dm6]	C	T	3.285e^-4	0.911	INTRON Muc55B
2L	19537427	2L_19537427_SNP [dm3] 2L_19537427_SNP [dm6]	T	A	3.287e^-4	0.911	UPSTREAM CR45455 & 1 other DOWNSTREAM CG33116 INTERGENIC
2L	12649880	2L_12649880_SNP [dm3] 2L_12649880_SNP [dm6]	C	A	3.288e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15063208	3L_15063208_SNP [dm3] 3L_15070108_SNP [dm6]	A	C	3.289e^-4	0.911	NON_SYNONYMOUS_CODING cp309	TF binding site mE1_TFBS_cad
2L	11163110	2L_11163110_SNP [dm3] 2L_11163110_SNP [dm6]	T	A	3.291e^-4	0.911	INTRON Ca-beta
2R	12038056	2R_12038056_SNP [dm3] 2R_16150551_SNP [dm6]	A	G	3.297e^-4	0.911	START_GAINED lbk UTR_5_PRIME lbk UPSTREAM CG10731	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14193284	2R_14193284_SNP [dm3] 2R_18305779_SNP [dm6]	G	T	3.303e^-4	0.911	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	1818179	X_1818179_SNP [dm3] X_1924146_SNP [dm6]	T	G	3.307e^-4	0.911	SYNONYMOUS_CODING Ocrl	TF binding site mE1_TFBS_sens
X	18404082	X_18404082_SNP [dm3] X_18510049_SNP [dm6]	C	T	3.320e^-4	0.911	INTRON Ggt-1	TF binding site mE1_TFBS_cnc
X	4761988	X_4761988_SNP [dm3] X_4867955_SNP [dm6]	A	G	3.320e^-4	0.911	INTRON CG42594
2L	14449274	2L_14449274_SNP [dm3] 2L_14449274_SNP [dm6]	A	G	3.323e^-4	0.911	UPSTREAM CR45726 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14730959	3L_14730959_SNP [dm3] 3L_14737859_SNP [dm6]	A	C	3.326e^-4	0.911	INTRON ome
2L	9404559	2L_9404559_SNP [dm3] 2L_9404559_SNP [dm6]	G	T	3.331e^-4	0.911	INTRON Shawl
X	20236327	X_20236327_SNP [dm3] X_20365300_SNP [dm6]	T	G	3.334e^-4	0.911	INTERGENIC	transposable element FlyBase
3R	23798457	3R_23798457_DEL [dm3] 3R_27972735_DEL [dm6]	CCCCAA	C	3.351e^-4	0.911	INTRON betaTub97EF
3R	17393672	3R_17393672_SNP [dm3] 3R_21567950_SNP [dm6]	T	C	3.353e^-4	0.911	INTRON CG15498
3L	3934159	3L_3934159_SNP [dm3] 3L_3934159_SNP [dm6]	G	T	3.357e^-4	0.911	UPSTREAM Eip63F-1 & 1 other INTRON Eip63F-1
3R	26694765	3R_26694765_SNP [dm3] 3R_30869043_SNP [dm6]	C	T	3.364e^-4	0.911	UTR_3_PRIME Cpr100A
3L	20079125	3L_20079125_SNP [dm3] 3L_20086025_SNP [dm6]	C	T	3.366e^-4	0.911	INTRON sNPF-R
3R	3483883	3R_3483883_SNP [dm3] 3R_7658161_SNP [dm6]	T	G	3.373e^-4	0.911	UPSTREAM Nlg1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14730955	3L_14730955_SNP [dm3] 3L_14737855_SNP [dm6]	C	T	3.375e^-4	0.911	INTRON ome
2R	11643931	2R_11643931_SNP [dm3] 2R_15756426_SNP [dm6]	G	A	3.376e^-4	0.911	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8743310	3R_8743310_SNP [dm3] 3R_12917588_SNP [dm6]	T	C	3.376e^-4	0.911	INTRON beat-Vb
3R	24330957	3R_24330957_INS [dm3] 3R_28505235_INS [dm6]	C	CAAC	3.378e^-4	0.911	INTRON Dhc98D
3L	13006587	3L_13006587_SNP [dm3] 3L_13013487_SNP [dm6]	C	T	3.379e^-4	0.911	NON_SYNONYMOUS_CODING MICAL-like	TF binding site mE1_TFBS_sens
2L	14904814	2L_14904814_SNP [dm3] 2L_14904814_SNP [dm6]	C	T	3.390e^-4	0.911	INTERGENIC
2L	10120489	2L_10120489_SNP [dm3] 2L_10120489_SNP [dm6]	G	A	3.391e^-4	0.911	INTRON CG44153 & 1 other
2R	9207066	2R_9207066_DEL [dm3] 2R_13319561_DEL [dm6]	TT	G	3.396e^-4	0.911	INTERGENIC
X	12761837	X_12761837_SNP [dm3] X_12867804_SNP [dm6]	A	C	3.402e^-4	0.911	INTRON Pde9
2L	15885053	2L_15885053_SNP [dm3] 2L_15885053_SNP [dm6]	G	A	3.407e^-4	0.911	INTERGENIC
3R	9734384	3R_9734384_SNP [dm3] 3R_13908662_SNP [dm6]	G	A	3.407e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	6108576	3L_6108576_SNP [dm3] 3L_6115476_SNP [dm6]	C	G	3.415e^-4	0.911	INTRON Ets65A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
X	5592246	X_5592246_SNP [dm3] X_5698213_SNP [dm6]	T	A	3.417e^-4	0.911	UPSTREAM CG4096 DOWNSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	13262344	3R_13262344_SNP [dm3] 3R_17436622_SNP [dm6]	A	T	3.422e^-4	0.911	INTRON CG5873
2R	14942273	2R_14942273_SNP [dm3] 2R_19054768_SNP [dm6]	G	A	3.423e^-4	0.911	DOWNSTREAM CG15116 INTERGENIC
3L	6115918	3L_6115918_SNP [dm3] 3L_6122818_SNP [dm6]	T	C	3.426e^-4	0.911	UTR_3_PRIME Ets65A	TF binding site mE1_TFBS_cad
3L	18140122	3L_18140122_SNP [dm3] 3L_18147022_SNP [dm6]	A	C	3.430e^-4	0.911	INTERGENIC
2R	1567648	2R_1567648_SNP [dm3] 2R_5680143_SNP [dm6]	C	T	3.435e^-4	0.911	SYNONYMOUS_CODING scaf	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	14435700	3L_14435700_SNP [dm3] 3L_14442600_SNP [dm6]	G	T	3.447e^-4	0.911	INTRON bbg
3R	23796479	3R_23796479_SNP [dm3] 3R_27970757_SNP [dm6]	C	T	3.466e^-4	0.911	INTRON betaTub97EF
2L	20767749	2L_20767749_SNP [dm3] 2L_20767749_SNP [dm6]	C	G	3.467e^-4	0.911	UTR_3_PRIME dia DOWNSTREAM dia	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15859481	2L_15859481_SNP [dm3] 2L_15859481_SNP [dm6]	C	T	3.469e^-4	0.911	INTERGENIC
2L	15885001	2L_15885001_INS [dm3] 2L_15885001_INS [dm6]	A	AA	3.473e^-4	0.911	INTERGENIC
2R	10695737	2R_10695737_SNP [dm3] 2R_14808232_SNP [dm6]	C	A	3.477e^-4	0.911	UPSTREAM hui INTERGENIC	regulatory region REDfly_CRMs
3L	4164472	3L_4164472_SNP [dm3] 3L_4164472_SNP [dm6]	T	A	3.477e^-4	0.911	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3569442	3R_3569442_SNP [dm3] 3R_7743720_SNP [dm6]	C	A	3.492e^-4	0.911	INTERGENIC
2R	17575627	2R_17575627_SNP [dm3] 2R_21688122_SNP [dm6]	A	C	3.497e^-4	0.911	NON_SYNONYMOUS_CODING CG30285 UPSTREAM Tbp & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	9746404	2R_9746404_DEL [dm3] 2R_13858899_DEL [dm6]	CTT	C	3.501e^-4	0.911	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	6501131	3R_6501131_SNP [dm3] 3R_10675409_SNP [dm6]	T	G	3.503e^-4	0.911	DOWNSTREAM CG6465 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	3622691	3L_3622691_SNP [dm3] 3L_3622691_SNP [dm6]	T	C	3.506e^-4	0.911	INTERGENIC
3L	9025844	3L_9025844_SNP [dm3] 3L_9032744_SNP [dm6]	A	T	3.511e^-4	0.911	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	25814043	3R_25814043_SNP [dm3] 3R_29988321_SNP [dm6]	A	G	3.518e^-4	0.911	SYNONYMOUS_CODING CG7896	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	6112738	3L_6112738_INS [dm3] 3L_6119638_INS [dm6]	A	AA	3.522e^-4	0.911	INTRON Ets65A
2R	17575262	2R_17575262_SNP [dm3] 2R_21687757_SNP [dm6]	A	G	3.534e^-4	0.911	UPSTREAM Tbp DOWNSTREAM CG30285 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6111197	3L_6111197_SNP [dm3] 3L_6118097_SNP [dm6]	C	A	3.540e^-4	0.911	INTRON Ets65A
2R	17567753	2R_17567753_SNP [dm3] 2R_21680248_SNP [dm6]	A	T	3.541e^-4	0.911	NON_SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17463685	2R_17463685_SNP [dm3] 2R_21576180_SNP [dm6]	G	A	3.547e^-4	0.911	UPSTREAM CG10440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13998154	3R_13998154_SNP [dm3] 3R_18172432_SNP [dm6]	C	A	3.551e^-4	0.911	UPSTREAM PP2A-B' INTRON PP2A-B'	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	15049702	3L_15049702_SNP [dm3] 3L_15056602_SNP [dm6]	T	A	3.552e^-4	0.911	INTRON Sytbeta
X	22330421	X_22330421_SNP [dm3] X_22928585_SNP [dm6]	T	A	3.557e^-4	0.911	INTERGENIC
2R	17575692	2R_17575692_SNP [dm3] 2R_21688187_SNP [dm6]	T	C	3.558e^-4	0.911	NON_SYNONYMOUS_CODING CG30285 UPSTREAM Tbp & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2L	11369027	2L_11369027_SNP [dm3] 2L_11369027_SNP [dm6]	A	C	3.560e^-4	0.911	INTRON salr	TF binding site mE1_TFBS_cad
2L	11143722	2L_11143722_SNP [dm3] 2L_11143722_SNP [dm6]	A	G	3.560e^-4	0.911	DOWNSTREAM CG31867 INTRON Gyc32E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2879041	2L_2879041_SNP [dm3] 2L_2879041_SNP [dm6]	A	T	3.574e^-4	0.911	UPSTREAM betaggt-II & 1 other DOWNSTREAM CG31950 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
X	22330646	X_22330646_SNP [dm3] X_22928810_SNP [dm6]	C	G	3.575e^-4	0.911	INTERGENIC
2L	14904682	2L_14904682_SNP [dm3] 2L_14904682_SNP [dm6]	G	A	3.578e^-4	0.911	INTERGENIC
2L	20748749	2L_20748749_SNP [dm3] 2L_20748749_SNP [dm6]	T	C	3.583e^-4	0.911	UTR_3_PRIME Fs_2_Ket INTRON Fs_2_Ket
2L	12653715	2L_12653715_SNP [dm3] 2L_12653715_SNP [dm6]	T	A	3.588e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1020406	2L_1020406_SNP [dm3] 2L_1020406_SNP [dm6]	A	G	3.590e^-4	0.911	INTRON IA-2
3R	11126562	3R_11126562_SNP [dm3] 3R_15300840_SNP [dm6]	T	C	3.591e^-4	0.911	INTRON Tm1
3L	14155609	3L_14155609_SNP [dm3] 3L_14162509_SNP [dm6]	T	C	3.594e^-4	0.911	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11217982	X_11217982_SNP [dm3] X_11323949_SNP [dm6]	C	T	3.601e^-4	0.911	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	11129729	2L_11129729_SNP [dm3] 2L_11129729_SNP [dm6]	G	C	3.606e^-4	0.911	SYNONYMOUS_CODING RfC38 DOWNSTREAM Nup160	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	864505	X_864505_SNP [dm3] X_970472_SNP [dm6]	C	T	3.618e^-4	0.911	INTERGENIC
2L	9187301	2L_9187301_SNP [dm3] 2L_9187301_SNP [dm6]	A	C	3.619e^-4	0.911	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13661288	2R_13661288_SNP [dm3] 2R_17773783_SNP [dm6]	A	G	3.635e^-4	0.911	DOWNSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	18910996	2R_18910996_SNP [dm3] 2R_23023473_SNP [dm6]	G	C	3.636e^-4	0.911	INTRON twi & 1 other
3L	10441172	3L_10441172_SNP [dm3] 3L_10448072_SNP [dm6]	A	T	3.639e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4039868	2L_4039868_SNP [dm3] 2L_4039868_SNP [dm6]	G	A	3.640e^-4	0.911	INTRON ed
2L	6194631	2L_6194631_SNP [dm3] 2L_6194631_SNP [dm6]	T	A	3.642e^-4	0.911	INTRON CG34380	TF binding site mE1_TFBS_chinmo
2L	10446126	2L_10446126_SNP [dm3] 2L_10446126_SNP [dm6]	C	A	3.662e^-4	0.911	INTRON loh
3R	25814622	3R_25814622_SNP [dm3] 3R_29988900_SNP [dm6]	T	A	3.672e^-4	0.911	SYNONYMOUS_CODING CG7896	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	12515002	2L_12515002_SNP [dm3] 2L_12515002_SNP [dm6]	T	C	3.675e^-4	0.911	INTRON bun
3L	9245006	3L_9245006_SNP [dm3] 3L_9251906_SNP [dm6]	A	G	3.675e^-4	0.911	UPSTREAM GluRIB DOWNSTREAM CG4477 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9648095	3R_9648095_SNP [dm3] 3R_13822373_SNP [dm6]	C	T	3.681e^-4	0.911	INTERGENIC
X	8698908	X_8698908_SNP [dm3] X_8804875_SNP [dm6]	G	A	3.681e^-4	0.911	INTRON Lim1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	7156191	3R_7156191_SNP [dm3] 3R_11330469_SNP [dm6]	G	T	3.693e^-4	0.911	INTRON pros	TF binding site BDTNP1_TFBS_dl
2R	16579905	2R_16579905_SNP [dm3] 2R_20692400_SNP [dm6]	C	T	3.696e^-4	0.911	UPSTREAM CG13438 EXON CR44659
X	22330264	X_22330264_SNP [dm3] X_22928428_SNP [dm6]	G	T	3.699e^-4	0.911	INTERGENIC
3L	11848611	3L_11848611_SNP [dm3] 3L_11855511_SNP [dm6]	T	C	3.700e^-4	0.911	INTRON CG44837
3L	6808566	3L_6808566_SNP [dm3] 3L_6815466_SNP [dm6]	T	C	3.701e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18476891	2R_18476891_SNP [dm3] 2R_22589386_SNP [dm6]	C	T	3.703e^-4	0.911	INTRON dnr1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	13162851	2L_13162851_SNP [dm3] 2L_13162851_SNP [dm6]	T	C	3.703e^-4	0.911	SYNONYMOUS_CODING CG5204 DOWNSTREAM DnaJ-H	TF binding site mE1_TFBS_cad
2R	19514712	2R_19514712_SNP [dm3] 2R_23627189_SNP [dm6]	G	A	3.705e^-4	0.911	INTERGENIC
3L	19050904	3L_19050904_SNP [dm3] 3L_19057804_SNP [dm6]	A	C	3.709e^-4	0.911	INTERGENIC
2R	14345787	2R_14345787_SNP [dm3] 2R_18458282_SNP [dm6]	C	T	3.709e^-4	0.911	UTR_3_PRIME CG30116 INTRON CG30116
3R	26008470	3R_26008470_SNP [dm3] 3R_30182748_SNP [dm6]	C	T	3.710e^-4	0.911	INTERGENIC
X	2773027	X_2773027_SNP [dm3] X_2878994_SNP [dm6]	T	A	3.718e^-4	0.911	INTRON kirre
2R	18029997	2R_18029997_SNP [dm3] 2R_22142492_SNP [dm6]	A	G	3.726e^-4	0.911	INTRON a	TF binding site BDTNP1_TFBS_twi
X	11328068	X_11328068_SNP [dm3] X_11434035_SNP [dm6]	T	C	3.729e^-4	0.911	DOWNSTREAM Evi5 INTRON Evi5
2L	9680253	2L_9680253_SNP [dm3] 2L_9680253_SNP [dm6]	G	C	3.733e^-4	0.911	INTERGENIC
X	8078766	X_8078766_SNP [dm3] X_8184733_SNP [dm6]	G	A	3.736e^-4	0.911	INTRON sdt
3R	9531350	3R_9531350_SNP [dm3] 3R_13705628_SNP [dm6]	T	C	3.748e^-4	0.911	UPSTREAM Adgf-D INTERGENIC
2R	10714687	2R_10714687_INS [dm3] 2R_14827182_INS [dm6]	A	ATGTA	3.752e^-4	0.911	INTERGENIC
3R	13969673	3R_13969673_SNP [dm3] 3R_18143951_SNP [dm6]	G	C	3.757e^-4	0.911	INTERGENIC
3L	8321461	3L_8321461_SNP [dm3] 3L_8328361_SNP [dm6]	T	C	3.758e^-4	0.911	UPSTREAM CG34462 DOWNSTREAM CG34461 INTERGENIC
2R	11327701	2R_11327701_SNP [dm3] 2R_15440196_SNP [dm6]	T	C	3.761e^-4	0.911	INTRON CG43729
2L	5591933	2L_5591933_SNP [dm3] 2L_5591933_SNP [dm6]	G	A	3.765e^-4	0.911	INTERGENIC
3L	11343447	3L_11343447_SNP [dm3] 3L_11350347_SNP [dm6]	C	T	3.767e^-4	0.911	UPSTREAM CR45251 INTERGENIC
X	22360610	X_22360610_SNP [dm3] X_22958774_SNP [dm6]	T	G	3.775e^-4	0.911	DOWNSTREAM CG40486 EXON CR45502	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13513064	2R_13513064_SNP [dm3] 2R_17625559_SNP [dm6]	C	T	3.776e^-4	0.911	INTRON CG10936
3R	23381924	3R_23381924_SNP [dm3] 3R_27556202_SNP [dm6]	G	A	3.778e^-4	0.911	INTRON Klp98A	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	13545136	3L_13545136_SNP [dm3] 3L_13552036_SNP [dm6]	C	G	3.779e^-4	0.911	INTRON bru-3
2L	14946375	2L_14946375_SNP [dm3] 2L_14946375_SNP [dm6]	G	A	3.785e^-4	0.911	INTRON CG42313
3L	6075718	3L_6075718_SNP [dm3] 3L_6082618_SNP [dm6]	C	T	3.786e^-4	0.911	UPSTREAM CG13293 DOWNSTREAM CG6619 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17575235	2R_17575235_SNP [dm3] 2R_21687730_SNP [dm6]	A	G	3.793e^-4	0.911	UPSTREAM Tbp DOWNSTREAM CG30285 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	8003313	X_8003313_SNP [dm3] X_8109280_SNP [dm6]	G	A	3.796e^-4	0.911	INTRON Gclc
2R	17653148	2R_17653148_SNP [dm3] 2R_21765643_SNP [dm6]	T	A	3.799e^-4	0.911	NON_SYNONYMOUS_CODING CG30395 UPSTREAM CR43984 DOWNSTREAM CG43982
2L	6623442	2L_6623442_SNP [dm3] 2L_6623442_SNP [dm6]	A	C	3.809e^-4	0.911	NON_SYNONYMOUS_CODING CG34345
2L	10469571	2L_10469571_SNP [dm3] 2L_10469571_SNP [dm6]	G	T	3.810e^-4	0.911	INTRON RluA-1
2L	10073109	2L_10073109_SNP [dm3] 2L_10073109_SNP [dm6]	A	G	3.814e^-4	0.911	INTRON CG44153	TF binding site mE1_TFBS_inv
2L	15826834	2L_15826834_SNP [dm3] 2L_15826834_SNP [dm6]	T	C	3.820e^-4	0.911	INTERGENIC
3L	6109716	3L_6109716_SNP [dm3] 3L_6116616_SNP [dm6]	G	C	3.825e^-4	0.911	INTRON Ets65A	TF binding site mE1_TFBS_Kr
3L	14730882	3L_14730882_SNP [dm3] 3L_14737782_SNP [dm6]	A	C	3.830e^-4	0.911	INTRON ome
3L	15654256	3L_15654256_SNP [dm3] 3L_15661156_SNP [dm6]	A	G	3.830e^-4	0.911	UPSTREAM Eig71Ek & 2 others DOWNSTREAM Eig71Ei INTERGENIC
3L	12838091	3L_12838091_SNP [dm3] 3L_12844991_SNP [dm6]	C	T	3.832e^-4	0.911	INTRON CG10948
3L	6592329	3L_6592329_SNP [dm3] 3L_6599229_SNP [dm6]	C	G	3.850e^-4	0.911	SYNONYMOUS_CODING ndl	TF binding site mE1_TFBS_cad
3L	1944442	3L_1944442_SNP [dm3] 3L_1944442_SNP [dm6]	G	T	3.853e^-4	0.911	SYNONYMOUS_CODING mu2	TF binding site mE1_TFBS_cad
X	11172591	X_11172591_SNP [dm3] X_11278558_SNP [dm6]	G	A	3.856e^-4	0.911	INTRON CG44422
2L	5514336	2L_5514336_SNP [dm3] 2L_5514336_SNP [dm6]	C	A	3.858e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6109991	3L_6109991_SNP [dm3] 3L_6116891_SNP [dm6]	A	C	3.858e^-4	0.911	INTRON Ets65A
2L	5514323	2L_5514323_SNP [dm3] 2L_5514323_SNP [dm6]	C	T	3.866e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4564396	2R_4564396_INS [dm3] 2R_8676891_INS [dm6]	T	TTTT	3.874e^-4	0.911	UPSTREAM CG30354 INTRON Acsl
3R	6364798	3R_6364798_SNP [dm3] 3R_10539076_SNP [dm6]	T	A	3.875e^-4	0.911	INTRON hth	TF binding site mE1_TFBS_cad
2L	11050752	2L_11050752_SNP [dm3] 2L_11050752_SNP [dm6]	G	C	3.884e^-4	0.911	INTRON Samuel
2R	15934456	2R_15934456_SNP [dm3] 2R_20046951_SNP [dm6]	C	G	3.886e^-4	0.911	INTERGENIC
3L	4286982	3L_4286982_SNP [dm3] 3L_4286982_SNP [dm6]	G	A	3.887e^-4	0.911	UPSTREAM TfIIEbeta DOWNSTREAM CG1316 INTERGENIC	TF binding site BDTNP1_TFBS_Med
3L	6112207	3L_6112207_SNP [dm3] 3L_6119107_SNP [dm6]	C	A	3.892e^-4	0.911	SYNONYMOUS_CODING Ets65A
2L	15740693	2L_15740693_SNP [dm3] 2L_15740693_SNP [dm6]	T	C	3.893e^-4	0.911	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19480177	2L_19480177_SNP [dm3] 2L_19480177_SNP [dm6]	A	G	3.903e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	19916614	3L_19916614_SNP [dm3] 3L_19923514_SNP [dm6]	A	G	3.909e^-4	0.911	UPSTREAM CG7770 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3L	19050895	3L_19050895_DEL [dm3] 3L_19057795_DEL [dm6]	AA	A	3.912e^-4	0.911	INTERGENIC
3L	19050906	3L_19050906_DEL [dm3] 3L_19057806_DEL [dm6]	AGA	A	3.912e^-4	0.911	INTERGENIC
3L	14730952	3L_14730952_SNP [dm3] 3L_14737852_SNP [dm6]	A	C	3.914e^-4	0.911	INTRON ome
3L	4570304	3L_4570304_SNP [dm3] 3L_4570304_SNP [dm6]	T	G	3.918e^-4	0.911	INTRON CG42540
3L	12285556	3L_12285556_SNP [dm3] 3L_12292456_SNP [dm6]	C	T	3.926e^-4	0.911	NON_SYNONYMOUS_CODING CG4328	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12668319	2L_12668319_SNP [dm3] 2L_12668319_SNP [dm6]	A	T	3.943e^-4	0.912	NON_SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site mE1_TFBS_sens
X	11661561	X_11661561_SNP [dm3] X_11767528_SNP [dm6]	G	A	3.944e^-4	0.912	SYNONYMOUS_CODING m	TF binding site mE1_TFBS_chinmo
2R	18257451	2R_18257451_SNP [dm3] 2R_22369946_SNP [dm6]	T	A	3.944e^-4	0.912	INTRON Liprin-gamma
3L	15049408	3L_15049408_SNP [dm3] 3L_15056308_SNP [dm6]	C	T	3.958e^-4	0.914	DOWNSTREAM CG13463 INTRON Sytbeta
2R	10682771	2R_10682771_SNP [dm3] 2R_14795266_SNP [dm6]	C	A	3.961e^-4	0.914	INTRON kn
2R	5317769	2R_5317769_SNP [dm3] 2R_9430264_SNP [dm6]	T	C	3.970e^-4	0.914	INTRON Pdk
3L	13377518	3L_13377518_SNP [dm3] 3L_13384418_SNP [dm6]	C	T	3.972e^-4	0.914	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
2L	19942334	2L_19942334_SNP [dm3] 2L_19942334_SNP [dm6]	C	T	3.983e^-4	0.914	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	8315928	2R_8315928_SNP [dm3] 2R_12428423_SNP [dm6]	T	A	3.985e^-4	0.914	UPSTREAM CG13154 DOWNSTREAM Nup54 INTERGENIC
3L	6808431	3L_6808431_SNP [dm3] 3L_6815331_SNP [dm6]	C	G	3.989e^-4	0.914	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12911726	2L_12911726_SNP [dm3] 2L_12911726_SNP [dm6]	A	G	3.995e^-4	0.914	UPSTREAM ACXC INTERGENIC
2L	12667319	2L_12667319_SNP [dm3] 2L_12667319_SNP [dm6]	A	G	3.998e^-4	0.914	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	2447773	X_2447773_DEL [dm3] X_2553740_DEL [dm6]	CATCTTGTCGTTA...	C	4.012e^-4	0.914	UPSTREAM Pdfr INTRON Pdfr
3L	1801587	3L_1801587_SNP [dm3] 3L_1801587_SNP [dm6]	T	C	4.012e^-4	0.914	SYNONYMOUS_CODING Patj DOWNSTREAM JTBR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6117183	3R_6117183_SNP [dm3] 3R_10291461_SNP [dm6]	C	A	4.022e^-4	0.914	INTRON CG43143
3L	15654302	3L_15654302_INS [dm3] 3L_15661202_INS [dm6]	T	TCCGAAATCT	4.037e^-4	0.914	UPSTREAM Eig71Ek & 2 others DOWNSTREAM Eig71Ei INTERGENIC
3L	5884765	3L_5884765_SNP [dm3] 3L_5891665_SNP [dm6]	A	G	4.063e^-4	0.914	INTERGENIC
2L	4179639	2L_4179639_SNP [dm3] 2L_4179639_SNP [dm6]	A	C	4.064e^-4	0.914	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	5649717	2R_5649717_SNP [dm3] 2R_9762212_SNP [dm6]	C	G	4.066e^-4	0.914	SYNONYMOUS_CODING trpl	TF binding site mE1_TFBS_cad
3R	12710770	3R_12710770_SNP [dm3] 3R_16885048_SNP [dm6]	T	C	4.068e^-4	0.914	INTRON iab-8
3L	6052770	3L_6052770_SNP [dm3] 3L_6059670_SNP [dm6]	G	A	4.086e^-4	0.914	UTR_5_PRIME CG6592 DOWNSTREAM CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_run
2L	20759357	2L_20759357_SNP [dm3] 2L_20759357_SNP [dm6]	C	A	4.088e^-4	0.914	UPSTREAM dia INTRON dia	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	19378731	3L_19378731_SNP [dm3] 3L_19385631_SNP [dm6]	C	T	4.088e^-4	0.914	INTRON CG32206
2L	839618	2L_839618_SNP [dm3] 2L_839618_SNP [dm6]	G	A	4.098e^-4	0.914	INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18915903	2L_18915903_SNP [dm3] 2L_18915903_SNP [dm6]	G	A	4.102e^-4	0.914	DOWNSTREAM ssp3 INTERGENIC
3L	717493	3L_717493_SNP [dm3] 3L_717493_SNP [dm6]	C	A	4.103e^-4	0.914	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	21858162	3L_21858162_SNP [dm3] 3L_21865062_SNP [dm6]	C	G	4.110e^-4	0.914	INTRON mub
3L	10427497	3L_10427497_SNP [dm3] 3L_10434397_SNP [dm6]	G	T	4.125e^-4	0.914	UPSTREAM Ir67c INTERGENIC
3R	4617212	3R_4617212_SNP [dm3] 3R_8791490_SNP [dm6]	T	C	4.132e^-4	0.914	INTRON Pif1A & 1 other	TF binding site mE1_TFBS_sbb
3L	5417587	3L_5417587_SNP [dm3] 3L_5424487_SNP [dm6]	C	T	4.133e^-4	0.914	INTRON CG34391
2R	3531885	2R_3531885_SNP [dm3] 2R_7644380_SNP [dm6]	T	A	4.137e^-4	0.914	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
3L	20404462	3L_20404462_INS [dm3] 3L_20411362_INS [dm6]	G	GTTG	4.139e^-4	0.914	UPSTREAM CG13248 INTERGENIC
X	19497851	X_19497851_SNP [dm3] X_19603818_SNP [dm6]	C	G	4.141e^-4	0.914	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12761839	X_12761839_SNP [dm3] X_12867806_SNP [dm6]	T	A	4.151e^-4	0.914	INTRON Pde9
3L	11445859	3L_11445859_SNP [dm3] 3L_11452759_SNP [dm6]	A	G	4.162e^-4	0.914	INTERGENIC
3L	3798625	3L_3798625_SNP [dm3] 3L_3798625_SNP [dm6]	G	C	4.163e^-4	0.914	INTRON CG32264
X	16939582	X_16939582_SNP [dm3] X_17045549_SNP [dm6]	A	C	4.170e^-4	0.914	INTRON CG45002
X	2686817	X_2686817_SNP [dm3] X_2792784_SNP [dm6]	A	G	4.173e^-4	0.914	SPLICE_SITE_REGION w INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16323429	2R_16323429_SNP [dm3] 2R_20435924_SNP [dm6]	G	A	4.187e^-4	0.914	INTRON CG12484
2L	15845767	2L_15845767_SNP [dm3] 2L_15845767_SNP [dm6]	A	T	4.188e^-4	0.914	INTERGENIC
3L	16816908	3L_16816908_SNP [dm3] 3L_16823808_SNP [dm6]	C	A	4.201e^-4	0.914	INTRON CG13024
2L	18541627	2L_18541627_INS [dm3] 2L_18541627_INS [dm6]	A	AA	4.210e^-4	0.914	SPLICE_SITE_REGION Pde11 INTRON Pde11	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6545003	2R_6545003_SNP [dm3] 2R_10657498_SNP [dm6]	C	T	4.227e^-4	0.914	EXON CR44452
2R	9746396	2R_9746396_SNP [dm3] 2R_13858891_SNP [dm6]	C	T	4.232e^-4	0.914	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	16539804	3L_16539804_SNP [dm3] 3L_16546704_SNP [dm6]	A	T	4.245e^-4	0.914	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	17653135	2R_17653135_SNP [dm3] 2R_21765630_SNP [dm6]	T	A	4.246e^-4	0.914	NON_SYNONYMOUS_CODING CG30395 UPSTREAM CR43984 DOWNSTREAM CG43982
2L	11099558	2L_11099558_SNP [dm3] 2L_11099558_SNP [dm6]	C	A	4.247e^-4	0.914	SYNONYMOUS_CODING Ge-1
2L	4701299	2L_4701299_SNP [dm3] 2L_4701299_SNP [dm6]	G	T	4.252e^-4	0.914	NON_SYNONYMOUS_CODING Taf12L INTRON CG34351
2R	20109570	2R_20109570_SNP [dm3] 2R_24222047_SNP [dm6]	T	C	4.256e^-4	0.914	INTRON CG30419
2L	9268421	2L_9268421_SNP [dm3] 2L_9268421_SNP [dm6]	G	A	4.261e^-4	0.914	INTRON Ggamma30A
2L	8803790	2L_8803790_SNP [dm3] 2L_8803790_SNP [dm6]	T	A	4.262e^-4	0.914	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7130426	2L_7130426_SNP [dm3] 2L_7130426_SNP [dm6]	C	T	4.271e^-4	0.914	INTRON Pvf3
2L	21134809	2L_21134809_SNP [dm3] 2L_21134809_SNP [dm6]	G	A	4.273e^-4	0.914	SYNONYMOUS_CODING Dap160 DOWNSTREAM Nhe2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3735376	2L_3735376_SNP [dm3] 2L_3735376_SNP [dm6]	A	G	4.278e^-4	0.914	INTRON CG10019
2L	11213143	2L_11213143_SNP [dm3] 2L_11213143_SNP [dm6]	C	G	4.283e^-4	0.914	INTRON ab
3R	14211274	3R_14211274_SNP [dm3] 3R_18385552_SNP [dm6]	G	C	4.287e^-4	0.914	UPSTREAM cona & 1 other INTERGENIC
3L	7551952	3L_7551952_SNP [dm3] 3L_7558852_SNP [dm6]	A	T	4.301e^-4	0.914	INTRON CG14837
X	19975002	X_19975002_SNP [dm3] X_20080969_SNP [dm6]	G	C	4.303e^-4	0.914	INTERGENIC
X	6159741	X_6159741_SNP [dm3] X_6265708_SNP [dm6]	A	T	4.304e^-4	0.914	INTRON schlank	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12965037	3L_12965037_SNP [dm3] 3L_12971937_SNP [dm6]	C	T	4.310e^-4	0.914	NON_SYNONYMOUS_CODING CG10748 UPSTREAM CG10749	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2878628	2L_2878628_SNP [dm3] 2L_2878628_SNP [dm6]	G	A	4.312e^-4	0.914	NON_SYNONYMOUS_CODING CG31950 UPSTREAM betaggt-II & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	18449590	2R_18449590_SNP [dm3] 2R_22562085_SNP [dm6]	C	T	4.320e^-4	0.914	UPSTREAM CG11362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3080065	3L_3080065_SNP [dm3] 3L_3080065_SNP [dm6]	T	C	4.325e^-4	0.914	INTRON CG11486
3L	3097022	3L_3097022_SNP [dm3] 3L_3097022_SNP [dm6]	T	C	4.326e^-4	0.914	UPSTREAM tRNA:CR32286 & 1 other DOWNSTREAM tRNA:CR32289 & 2 others INTRON Cht7	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13794303	2R_13794303_SNP [dm3] 2R_17906798_SNP [dm6]	C	T	4.331e^-4	0.914	INTRON Elk
2L	12728460	2L_12728460_SNP [dm3] 2L_12728460_SNP [dm6]	T	G	4.338e^-4	0.914	INTRON MRP
2L	9369079	2L_9369079_SNP [dm3] 2L_9369079_SNP [dm6]	T	G	4.349e^-4	0.914	DOWNSTREAM CG34181 INTERGENIC
3L	6109029	3L_6109029_SNP [dm3] 3L_6115929_SNP [dm6]	C	T	4.353e^-4	0.914	INTRON Ets65A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	12863159	3L_12863159_SNP [dm3] 3L_12870059_SNP [dm6]	T	C	4.360e^-4	0.914	INTERGENIC
2L	1721103	2L_1721103_SNP [dm3] 2L_1721103_SNP [dm6]	T	G	4.363e^-4	0.914	INTRON Rim2
3L	19056962	3L_19056962_SNP [dm3] 3L_19063862_SNP [dm6]	A	C	4.365e^-4	0.914	INTRON CG6812	TF binding site BDTNP1_TFBS_hb
3L	9759767	3L_9759767_INS [dm3] 3L_9766667_INS [dm6]	A	AA	4.366e^-4	0.914	INTRON CG8177
3L	11403590	3L_11403590_INS [dm3] 3L_11410490_INS [dm6]	G	CT	4.371e^-4	0.914	INTERGENIC
3L	19023523	3L_19023523_SNP [dm3] 3L_19030423_SNP [dm6]	C	G	4.381e^-4	0.914	INTRON nkd
2R	11375308	2R_11375308_SNP [dm3] 2R_15487803_SNP [dm6]	G	A	4.385e^-4	0.914	SYNONYMOUS_CODING CG12964	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8997430	2L_8997430_SNP [dm3] 2L_8997430_SNP [dm6]	C	G	4.392e^-4	0.914	UPSTREAM CG18661 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
2L	8997457	2L_8997457_SNP [dm3] 2L_8997457_SNP [dm6]	G	T	4.392e^-4	0.914	UPSTREAM CG18661 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
2L	8997459	2L_8997459_SNP [dm3] 2L_8997459_SNP [dm6]	C	G	4.392e^-4	0.914	UPSTREAM CG18661 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
3L	19171564	3L_19171564_SNP [dm3] 3L_19178464_SNP [dm6]	G	T	4.392e^-4	0.914	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9565086	2L_9565086_SNP [dm3] 2L_9565086_SNP [dm6]	A	G	4.392e^-4	0.914	UTR_5_PRIME jp INTRON jp
3R	18655614	3R_18655614_SNP [dm3] 3R_22829892_SNP [dm6]	T	C	4.393e^-4	0.914	INTERGENIC
2R	9766374	2R_9766374_SNP [dm3] 2R_13878869_SNP [dm6]	G	A	4.397e^-4	0.914	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6111207	3L_6111207_SNP [dm3] 3L_6118107_SNP [dm6]	G	A	4.401e^-4	0.914	INTRON Ets65A
3L	17895240	3L_17895240_SNP [dm3] 3L_17902140_SNP [dm6]	T	C	4.408e^-4	0.914	INTRON Prestin
2R	13794296	2R_13794296_SNP [dm3] 2R_17906791_SNP [dm6]	G	T	4.410e^-4	0.914	INTRON Elk
3L	19050885	3L_19050885_INS [dm3] 3L_19057785_INS [dm6]	A	ACATACATTTTTTA...	4.420e^-4	0.914	INTERGENIC
2L	9403671	2L_9403671_SNP [dm3] 2L_9403671_SNP [dm6]	C	T	4.443e^-4	0.914	INTRON Shawl
3L	8712208	3L_8712208_SNP [dm3] 3L_8719108_SNP [dm6]	A	G	4.447e^-4	0.914	UTR_3_PRIME SrpRbeta	TF binding site BDTNP1_TFBS_dl
2L	8138493	2L_8138493_SNP [dm3] 2L_8138493_SNP [dm6]	A	G	4.449e^-4	0.914	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9224183	2R_9224183_SNP [dm3] 2R_13336678_SNP [dm6]	T	C	4.450e^-4	0.914	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	6109339	3L_6109339_SNP [dm3] 3L_6116239_SNP [dm6]	A	G	4.459e^-4	0.914	INTRON Ets65A	TF binding site mE1_TFBS_Kr
3R	10169247	3R_10169247_SNP [dm3] 3R_14343525_SNP [dm6]	A	C	4.459e^-4	0.914	INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16408132	2L_16408132_SNP [dm3] 2L_16408132_SNP [dm6]	A	G	4.463e^-4	0.914	INTRON CG5888
3L	6808231	3L_6808231_SNP [dm3] 3L_6815131_SNP [dm6]	T	A	4.468e^-4	0.914	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	18036428	3R_18036428_DEL [dm3] 3R_22210706_DEL [dm6]	GAGAAGGATG	G	4.469e^-4	0.914	INTRON SKIP
2R	1990660	2R_1990660_SNP [dm3] 2R_6103155_SNP [dm6]	C	T	4.472e^-4	0.914	INTRON EcR	TF binding site mE1_TFBS_Trl
2L	16409503	2L_16409503_SNP [dm3] 2L_16409503_SNP [dm6]	A	G	4.473e^-4	0.914	INTRON CG5888
2R	18560581	2R_18560581_INS [dm3] 2R_22673076_INS [dm6]	G	GG	4.476e^-4	0.914	UTR_3_PRIME RYBP DOWNSTREAM CR44761	TF binding site mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	1755749	2R_1755749_SNP [dm3] 2R_5868244_SNP [dm6]	G	A	4.497e^-4	0.914	INTERGENIC
2L	9268411	2L_9268411_SNP [dm3] 2L_9268411_SNP [dm6]	T	G	4.501e^-4	0.914	INTRON Ggamma30A
2R	14846323	2R_14846323_SNP [dm3] 2R_18958818_SNP [dm6]	C	A	4.503e^-4	0.914	UTR_3_PRIME sano
3R	6874352	3R_6874352_DEL [dm3] 3R_11048630_DEL [dm6]	ACGAACGAAAAATGTTTAAT...	A	4.505e^-4	0.914	UTR_3_PRIME CG34114
2L	9406064	2L_9406064_SNP [dm3] 2L_9406064_SNP [dm6]	A	T	4.508e^-4	0.914	UTR_5_PRIME Shawl
2R	13257127	2R_13257127_SNP [dm3] 2R_17369622_SNP [dm6]	G	A	4.509e^-4	0.914	INTRON mbl
X	5878865	X_5878865_SNP [dm3] X_5984832_SNP [dm6]	C	G	4.513e^-4	0.914	SYNONYMOUS_CODING Grip	TF binding site mE1_TFBS_chinmo
3L	4214225	3L_4214225_SNP [dm3] 3L_4214225_SNP [dm6]	C	A	4.527e^-4	0.914	INTRON CG43367	TF binding site mE1_TFBS_cad
2R	11363303	2R_11363303_SNP [dm3] 2R_15475798_SNP [dm6]	G	A	4.527e^-4	0.914	INTRON CG8180
3R	8742486	3R_8742486_SNP [dm3] 3R_12916764_SNP [dm6]	A	T	4.536e^-4	0.914	INTRON beat-Vb
3R	24917344	3R_24917344_SNP [dm3] 3R_29091622_SNP [dm6]	A	G	4.541e^-4	0.914	INTRON CG11873	TF binding site BDTNP1_TFBS_da
2R	5554104	2R_5554104_SNP [dm3] 2R_9666599_SNP [dm6]	C	G	4.545e^-4	0.914	INTRON Mmp2
3L	11445857	3L_11445857_SNP [dm3] 3L_11452757_SNP [dm6]	G	A	4.587e^-4	0.914	INTERGENIC
3L	6180738	3L_6180738_SNP [dm3] 3L_6187638_SNP [dm6]	T	C	4.590e^-4	0.914	SYNONYMOUS_CODING D19A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17565919	2R_17565919_SNP [dm3] 2R_21678414_SNP [dm6]	G	A	4.591e^-4	0.914	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16557286	X_16557286_SNP [dm3] X_16663253_SNP [dm6]	T	C	4.593e^-4	0.914	SYNONYMOUS_CODING CG15865 INTRON r	TF binding site mE1_TFBS_chinmo
3L	17895235	3L_17895235_SNP [dm3] 3L_17902135_SNP [dm6]	G	C	4.595e^-4	0.914	INTRON Prestin
3R	24456031	3R_24456031_SNP [dm3] 3R_28630309_SNP [dm6]	C	T	4.602e^-4	0.914	INTRON CG10011	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	10777409	2L_10777409_SNP [dm3] 2L_10777409_SNP [dm6]	A	C	4.605e^-4	0.914	INTRON CG31869
3R	4637938	3R_4637938_SNP [dm3] 3R_8812216_SNP [dm6]	T	A	4.614e^-4	0.914	INTRON CG9837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	16039893	2L_16039893_SNP [dm3] 2L_16039893_SNP [dm6]	A	T	4.627e^-4	0.914	UTR_3_PRIME beat-Ic
3L	5206436	3L_5206436_SNP [dm3] 3L_5213336_SNP [dm6]	G	C	4.630e^-4	0.914	INTRON shep
3L	6465703	3L_6465703_SNP [dm3] 3L_6472603_SNP [dm6]	C	G	4.636e^-4	0.914	INTRON CG42747	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8218498	2L_8218498_SNP [dm3] 2L_8218498_SNP [dm6]	G	A	4.637e^-4	0.914	SYNONYMOUS_CODING Snx6 UPSTREAM CG8292
3R	9728038	3R_9728038_SNP [dm3] 3R_13902316_SNP [dm6]	T	G	4.640e^-4	0.914	NON_SYNONYMOUS_CODING ems	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11082510	2R_11082510_SNP [dm3] 2R_15195005_SNP [dm6]	T	G	4.642e^-4	0.914	UPSTREAM CG43829 INTERGENIC
3L	11452598	3L_11452598_SNP [dm3] 3L_11459498_SNP [dm6]	C	T	4.648e^-4	0.914	SYNONYMOUS_CODING CG7551	TF binding site mE1_TFBS_inv
3R	17015263	3R_17015263_SNP [dm3] 3R_21189541_SNP [dm6]	T	A	4.651e^-4	0.914	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15410503	2R_15410503_SNP [dm3] 2R_19522998_SNP [dm6]	T	A	4.660e^-4	0.914	UTR_3_PRIME sm DOWNSTREAM sm
3R	4276991	3R_4276991_SNP [dm3] 3R_8451269_SNP [dm6]	T	G	4.665e^-4	0.914	INTRON CG45263
2L	14365355	2L_14365355_INS [dm3] 2L_14365355_INS [dm6]	T	TATTGCATCAGGAT...	4.666e^-4	0.914	UTR_3_PRIME spel1 INTRON spel1
2L	12720614	2L_12720614_SNP [dm3] 2L_12720614_SNP [dm6]	T	C	4.684e^-4	0.914	INTRON CG5792 & 1 other	TF binding site mE1_TFBS_cad
3L	8580767	3L_8580767_SNP [dm3] 3L_8587667_SNP [dm6]	A	C	4.704e^-4	0.914	SYNONYMOUS_CODING CG43078 UTR_5_PRIME CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16408076	2L_16408076_INS [dm3] 2L_16408076_INS [dm6]	G	GAAATGCTG	4.705e^-4	0.914	INTRON CG5888
2L	10290668	2L_10290668_SNP [dm3] 2L_10290668_SNP [dm6]	A	T	4.707e^-4	0.914	INTRON CG5604
X	19497506	X_19497506_SNP [dm3] X_19603473_SNP [dm6]	C	T	4.712e^-4	0.914	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19980469	X_19980469_SNP [dm3] X_20086436_SNP [dm6]	C	A	4.714e^-4	0.914	INTERGENIC
2L	15009610	2L_15009610_SNP [dm3] 2L_15009610_SNP [dm6]	A	G	4.729e^-4	0.914	UTR_5_PRIME l_2_35Bc UPSTREAM l_2_35Bd INTRON l_2_35Bc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	8208987	2L_8208987_SNP [dm3] 2L_8208987_SNP [dm6]	A	G	4.731e^-4	0.914	NON_SYNONYMOUS_CODING CG8419 DOWNSTREAM Su_var_205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
3R	11029947	3R_11029947_SNP [dm3] 3R_15204225_SNP [dm6]	G	A	4.733e^-4	0.914	SYNONYMOUS_CODING Spn88Ea	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18505590	2R_18505590_SNP [dm3] 2R_22618085_SNP [dm6]	T	G	4.737e^-4	0.914	INTRON CG33143
2L	6086009	2L_6086009_DEL [dm3] 2L_6086009_DEL [dm6]	TT	T	4.738e^-4	0.914	INTRON Kr-h1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20772961	2L_20772961_SNP [dm3] 2L_20772961_SNP [dm6]	A	T	4.751e^-4	0.914	INTRON cad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8111200	2L_8111200_SNP [dm3] 2L_8111200_SNP [dm6]	G	A	4.751e^-4	0.914	UTR_3_PRIME Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4495174	X_4495174_SNP [dm3] X_4601141_SNP [dm6]	A	C	4.751e^-4	0.914	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
2L	16408129	2L_16408129_SNP [dm3] 2L_16408129_SNP [dm6]	T	C	4.754e^-4	0.914	INTRON CG5888
2L	16571192	2L_16571192_SNP [dm3] 2L_16571192_SNP [dm6]	A	C	4.755e^-4	0.914	INTRON CG42389
2R	8932827	2R_8932827_SNP [dm3] 2R_13045322_SNP [dm6]	G	T	4.770e^-4	0.914	UTR_3_PRIME CG13323	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13844101	2L_13844101_SNP [dm3] 2L_13844101_SNP [dm6]	C	T	4.771e^-4	0.914	UTR_3_PRIME CG8997 UPSTREAM CG33306 DOWNSTREAM CG8997 INTRON CenG1A
2R	18971530	2R_18971530_SNP [dm3] 2R_23084007_SNP [dm6]	T	C	4.771e^-4	0.914	DOWNSTREAM Gr59b INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
2R	18407699	2R_18407699_SNP [dm3] 2R_22520194_SNP [dm6]	A	G	4.772e^-4	0.914	INTRON px	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	1037725	X_1037725_SNP [dm3] X_1143692_SNP [dm6]	A	G	4.785e^-4	0.914	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	3269896	2R_3269896_SNP [dm3] 2R_7382391_SNP [dm6]	C	A	4.786e^-4	0.914	UTR_3_PRIME cos UPSTREAM Dscam1 DOWNSTREAM cos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	18515099	2L_18515099_SNP [dm3] 2L_18515099_SNP [dm6]	G	A	4.789e^-4	0.914	INTERGENIC
X	1314969	X_1314969_SNP [dm3] X_1420936_SNP [dm6]	A	C	4.793e^-4	0.914	INTRON futsch	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	17051195	X_17051195_SNP [dm3] X_17157162_SNP [dm6]	A	G	4.800e^-4	0.914	SYNONYMOUS_CODING xmas-2	TF binding site mE1_TFBS_chinmo
3L	10049471	3L_10049471_SNP [dm3] 3L_10056371_SNP [dm6]	T	A	4.806e^-4	0.914	INTRON dpr6
3L	14604765	3L_14604765_SNP [dm3] 3L_14611665_SNP [dm6]	A	C	4.810e^-4	0.914	INTERGENIC
3L	18122340	3L_18122340_SNP [dm3] 3L_18129240_SNP [dm6]	A	G	4.824e^-4	0.914	UTR_3_PRIME Cyp312a1 DOWNSTREAM Cyp312a1
X	3535193	X_3535193_SNP [dm3] X_3641160_SNP [dm6]	T	C	4.824e^-4	0.914	INTRON AstA-R1
3R	25259049	3R_25259049_SNP [dm3] 3R_29433327_SNP [dm6]	T	A	4.832e^-4	0.914	INTRON Ptp99A
2R	16686158	2R_16686158_SNP [dm3] 2R_20798653_SNP [dm6]	T	C	4.834e^-4	0.914	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13862677	2L_13862677_SNP [dm3] 2L_13862677_SNP [dm6]	A	G	4.835e^-4	0.914	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	12276587	3L_12276587_SNP [dm3] 3L_12283487_SNP [dm6]	G	T	4.836e^-4	0.914	INTERGENIC
3R	18524082	3R_18524082_SNP [dm3] 3R_22698360_SNP [dm6]	G	A	4.840e^-4	0.914	UTR_5_PRIME Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	2703783	X_2703783_SNP [dm3] X_2809750_SNP [dm6]	A	T	4.841e^-4	0.914	UPSTREAM CG12498 INTRON kirre
2R	9746370	2R_9746370_SNP [dm3] 2R_13858865_SNP [dm6]	A	T	4.842e^-4	0.914	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3080109	3L_3080109_SNP [dm3] 3L_3080109_SNP [dm6]	G	C	4.844e^-4	0.914	INTRON CG11486	TF binding site mE1_TFBS_bab1
2R	3134814	2R_3134814_SNP [dm3] 2R_7247309_SNP [dm6]	A	T	4.860e^-4	0.914	INTERGENIC	TF binding site mE1_TFBS_cad
2R	6437545	2R_6437545_SNP [dm3] 2R_10550040_SNP [dm6]	T	A	4.861e^-4	0.914	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sbb
X	17769797	X_17769797_INS [dm3] X_17875764_INS [dm6]	T	TT	4.863e^-4	0.914	UPSTREAM mnb INTRON mnb
2L	9298259	2L_9298259_SNP [dm3] 2L_9298259_SNP [dm6]	T	C	4.867e^-4	0.914	UTR_3_PRIME Ggamma30A
2L	5618602	2L_5618602_SNP [dm3] 2L_5618602_SNP [dm6]	G	C	4.876e^-4	0.914	UPSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5757716	3L_5757716_SNP [dm3] 3L_5764616_SNP [dm6]	C	T	4.881e^-4	0.914	UPSTREAM snoRNA:Psi28S-1837c & 2 others DOWNSTREAM unsRNA:CG10576-a INTRON CG10576	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10167962	2L_10167962_SNP [dm3] 2L_10167962_SNP [dm6]	T	C	4.882e^-4	0.914	INTRON CG44153
3L	7087114	3L_7087114_SNP [dm3] 3L_7094014_SNP [dm6]	C	T	4.890e^-4	0.914	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	1574385	2R_1574385_SNP [dm3] 2R_5686880_SNP [dm6]	T	C	4.903e^-4	0.914	INTRON scaf
3L	13643808	3L_13643808_SNP [dm3] 3L_13650708_SNP [dm6]	A	T	4.915e^-4	0.914	INTRON bru-3
2R	16171485	2R_16171485_SNP [dm3] 2R_20283980_SNP [dm6]	T	C	4.928e^-4	0.914	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21134977	2L_21134977_SNP [dm3] 2L_21134977_SNP [dm6]	C	T	4.935e^-4	0.914	SYNONYMOUS_CODING Dap160 DOWNSTREAM Nhe2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4093929	2L_4093929_SNP [dm3] 2L_4093929_SNP [dm6]	T	G	4.936e^-4	0.914	INTRON ed	TF binding site BDTNP1_TFBS_twi
3L	7207864	3L_7207864_SNP [dm3] 3L_7214764_SNP [dm6]	G	T	4.939e^-4	0.914	INTERGENIC
2R	1047098	2R_1047098_SNP [dm3] 2R_5159593_SNP [dm6]	A	G	4.939e^-4	0.914	INTERGENIC	transposable element FlyBase
3R	18551152	3R_18551152_SNP [dm3] 3R_22725430_SNP [dm6]	C	T	4.941e^-4	0.914	SYNONYMOUS_CODING CG4813 UPSTREAM Irp-1A DOWNSTREAM CR45648	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6108321	3L_6108321_SNP [dm3] 3L_6115221_SNP [dm6]	G	A	4.946e^-4	0.914	INTRON Ets65A	TF binding site mE1_TFBS_Kr
3L	14894011	3L_14894011_SNP [dm3] 3L_14900911_SNP [dm6]	T	C	4.947e^-4	0.914	INTERGENIC
2R	13896714	2R_13896714_SNP [dm3] 2R_18009209_SNP [dm6]	T	A	4.948e^-4	0.914	INTERGENIC
2R	9746383	2R_9746383_SNP [dm3] 2R_13858878_SNP [dm6]	T	A	4.952e^-4	0.914	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	15971316	2L_15971316_SNP [dm3] 2L_15971316_SNP [dm6]	G	A	4.967e^-4	0.914	INTERGENIC
2L	4660715	2L_4660715_SNP [dm3] 2L_4660715_SNP [dm6]	A	G	4.969e^-4	0.914	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14391767	2L_14391767_SNP [dm3] 2L_14391767_SNP [dm6]	A	G	4.970e^-4	0.914	SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo
X	11217956	X_11217956_INS [dm3] X_11323923_INS [dm6]	T	TC	4.971e^-4	0.914	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	9792892	3R_9792892_SNP [dm3] 3R_13967170_SNP [dm6]	A	T	4.982e^-4	0.914	UTR_3_PRIME rdx DOWNSTREAM rdx & 1 other	TF binding site BDTNP1_TFBS_z
2L	2205665	2L_2205665_SNP [dm3] 2L_2205665_SNP [dm6]	G	C	4.984e^-4	0.914	DOWNSTREAM CG33124 INTRON CG31668

By genomic position
Variant impact
Gene name

anteriorwidth phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results