DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.609e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.05179
In_3R_P	0.09293

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	4.8028	0.0906

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2013 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	23494766	3R_23494766_SNP [dm3] 3R_27669044_SNP [dm6]	G	A	1.950e^-7	0.291	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26729549	3R_26729549_SNP [dm3] 3R_30903827_SNP [dm6]	G	A	4.407e^-7	0.291	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6968839	2L_6968839_SNP [dm3] 2L_6968839_SNP [dm6]	G	A	5.681e^-7	0.291	UTR_3_PRIME snRNP-U1-70K DOWNSTREAM snRNP-U1-70K	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	21902872	X_21902872_SNP [dm3] X_22501036_SNP [dm6]	T	A	7.131e^-7	0.291	NON_SYNONYMOUS_CODING l_1_G0196 INTRON l_1_G0196
3R	26723629	3R_26723629_SNP [dm3] 3R_30897907_SNP [dm6]	C	G	1.186e^-6	0.291	NON_SYNONYMOUS_CODING Cyp4c3
3L	19524744	3L_19524744_SNP [dm3] 3L_19531644_SNP [dm6]	A	T	1.208e^-6	0.291	INTERGENIC
2L	6965613	2L_6965613_SNP [dm3] 2L_6965613_SNP [dm6]	G	A	1.344e^-6	0.291	SYNONYMOUS_CODING Coprox	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6969567	2L_6969567_SNP [dm3] 2L_6969567_SNP [dm6]	C	A	1.380e^-6	0.291	UTR_3_PRIME snRNP-U1-70K DOWNSTREAM snRNP-U1-70K	TF binding site mE1_TFBS_sens
2L	6968350	2L_6968350_SNP [dm3] 2L_6968350_SNP [dm6]	G	A	1.395e^-6	0.291	UPSTREAM smt3 DOWNSTREAM snRNP-U1-70K INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	19524747	3L_19524747_SNP [dm3] 3L_19531647_SNP [dm6]	G	A	1.687e^-6	0.316	INTERGENIC
3R	26713324	3R_26713324_SNP [dm3] 3R_30887602_SNP [dm6]	T	A	1.872e^-6	0.319	INTRON Sap-r
3R	26713310	3R_26713310_SNP [dm3] 3R_30887588_SNP [dm6]	A	C	2.944e^-6	0.431	INTRON Sap-r
3R	23494660	3R_23494660_SNP [dm3] 3R_27668938_SNP [dm6]	C	T	2.984e^-6	0.431	INTRON unc80	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22764850	3R_22764850_SNP [dm3] 3R_26939128_SNP [dm6]	T	G	3.358e^-6	0.45	SYNONYMOUS_CODING sda
2L	7453397	2L_7453397_SNP [dm3] 2L_7453397_SNP [dm6]	G	T	4.061e^-6	0.508	INTRON Gr28a
3R	25802116	3R_25802116_SNP [dm3] 3R_29976394_SNP [dm6]	A	C	5.421e^-6	0.621	INTERGENIC
X	9126675	X_9126675_SNP [dm3] X_9232642_SNP [dm6]	G	T	5.624e^-6	0.621	UPSTREAM CG12121 DOWNSTREAM Ir8a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	16550272	3L_16550272_SNP [dm3] 3L_16557172_SNP [dm6]	C	A	6.515e^-6	0.63	SYNONYMOUS_CODING CG4229	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17658807	X_17658807_SNP [dm3] X_17764774_SNP [dm6]	C	G	6.635e^-6	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21126037	3R_21126037_SNP [dm3] 3R_25300315_SNP [dm6]	G	T	6.717e^-6	0.63	UPSTREAM CG31288 & 1 other INTERGENIC
2L	7495110	2L_7495110_SNP [dm3] 2L_7495110_SNP [dm6]	A	C	8.084e^-6	0.71	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6965902	2L_6965902_SNP [dm3] 2L_6965902_SNP [dm6]	A	T	8.329e^-6	0.71	DOWNSTREAM smt3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	11113469	2R_11113469_SNP [dm3] 2R_15225964_SNP [dm6]	G	T	8.784e^-6	0.712	UPSTREAM CR44370 INTRON Fs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16606089	3L_16606089_SNP [dm3] 3L_16612989_SNP [dm6]	G	A	9.433e^-6	0.712	UPSTREAM Su_P_ DOWNSTREAM Mo25 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16383975	2R_16383975_SNP [dm3] 2R_20496470_SNP [dm6]	A	G	9.494e^-6	0.712	INTERGENIC
3L	683252	3L_683252_SNP [dm3] 3L_683252_SNP [dm6]	G	T	1.075e^-5	0.759	SYNONYMOUS_CODING ebd1 UPSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6965897	2L_6965897_SNP [dm3] 2L_6965897_SNP [dm6]	G	A	1.114e^-5	0.759	DOWNSTREAM smt3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	22137183	2L_22137183_SNP [dm3] 2L_22137183_SNP [dm6]	G	A	1.198e^-5	0.759	INTRON CG42748
X	3731271	X_3731271_SNP [dm3] X_3837238_SNP [dm6]	T	C	1.287e^-5	0.759	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6959202	2L_6959202_SNP [dm3] 2L_6959202_SNP [dm6]	A	G	1.304e^-5	0.759	NON_SYNONYMOUS_CODING Atac1 DOWNSTREAM CG3430
2L	8989513	2L_8989513_SNP [dm3] 2L_8989513_SNP [dm6]	G	C	1.340e^-5	0.759	UTR_5_PRIME rost UPSTREAM rost
X	9126690	X_9126690_SNP [dm3] X_9232657_SNP [dm6]	A	G	1.392e^-5	0.759	UPSTREAM CG12121 DOWNSTREAM Ir8a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2R	17321947	2R_17321947_SNP [dm3] 2R_21434442_SNP [dm6]	T	G	1.402e^-5	0.759	INTRON Sdc
3L	16605774	3L_16605774_SNP [dm3] 3L_16612674_SNP [dm6]	G	T	1.402e^-5	0.759	SYNONYMOUS_CODING CG4101 UPSTREAM Su_P_ DOWNSTREAM Mo25	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	18781527	3L_18781527_SNP [dm3] 3L_18788427_SNP [dm6]	C	T	1.416e^-5	0.759	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13385094	3L_13385094_SNP [dm3] 3L_13391994_SNP [dm6]	C	G	1.474e^-5	0.763	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	9127299	X_9127299_SNP [dm3] X_9233266_SNP [dm6]	G	A	1.529e^-5	0.763	SYNONYMOUS_CODING Ir8a UPSTREAM CG12121	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13360917	3L_13360917_DEL [dm3] 3L_13367817_DEL [dm6]	CC	C	1.593e^-5	0.763	INTERGENIC
3R	23799951	3R_23799951_SNP [dm3] 3R_27974229_SNP [dm6]	C	G	1.617e^-5	0.763	SYNONYMOUS_CODING betaTub97EF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7453394	2L_7453394_SNP [dm3] 2L_7453394_SNP [dm6]	C	A	1.628e^-5	0.763	INTRON Gr28a
3R	20979552	3R_20979552_SNP [dm3] 3R_25153830_SNP [dm6]	T	C	1.694e^-5	0.764	INTERGENIC
2L	7453392	2L_7453392_SNP [dm3] 2L_7453392_SNP [dm6]	T	C	1.747e^-5	0.764	INTRON Gr28a
3L	13359024	3L_13359024_SNP [dm3] 3L_13365924_SNP [dm6]	A	T	1.780e^-5	0.764	INTERGENIC
2L	5365754	2L_5365754_SNP [dm3] 2L_5365754_SNP [dm6]	A	C	1.791e^-5	0.764	UTR_3_PRIME nompC DOWNSTREAM nompC	TF binding site mE1_TFBS_bab1
2R	5663854	2R_5663854_DEL [dm3] 2R_9776349_DEL [dm6]	ATAATAATTTTCTA...	A	1.900e^-5	0.792	INTRON CG1688 EXON CR44207
2L	8702856	2L_8702856_SNP [dm3] 2L_8702856_SNP [dm6]	A	T	2.025e^-5	0.806	UPSTREAM CR44992 INTRON Hnf4
2L	22092301	2L_22092301_SNP [dm3] 2L_22092301_SNP [dm6]	G	C	2.033e^-5	0.806	INTERGENIC	transposable element FlyBase
3L	17274270	3L_17274270_SNP [dm3] 3L_17281170_SNP [dm6]	G	C	2.130e^-5	0.806	INTERGENIC
2R	6993126	2R_6993126_SNP [dm3] 2R_11105621_SNP [dm6]	G	C	2.180e^-5	0.806	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	13387357	3L_13387357_SNP [dm3] 3L_13394257_SNP [dm6]	C	T	2.186e^-5	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26713514	3R_26713514_SNP [dm3] 3R_30887792_SNP [dm6]	C	T	2.213e^-5	0.806	INTRON Sap-r
X	12166782	X_12166782_SNP [dm3] X_12272749_SNP [dm6]	G	A	2.235e^-5	0.806	INTRON Ten-a
X	9126966	X_9126966_SNP [dm3] X_9232933_SNP [dm6]	C	T	2.294e^-5	0.809	SYNONYMOUS_CODING Ir8a UPSTREAM CG12121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	6966102	2L_6966102_SNP [dm3] 2L_6966102_SNP [dm6]	A	T	2.367e^-5	0.809	DOWNSTREAM smt3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	18224937	2L_18224937_SNP [dm3] 2L_18224937_SNP [dm6]	A	G	2.608e^-5	0.809	INTRON CG42750
2L	20865778	2L_20865778_SNP [dm3] 2L_20865778_SNP [dm6]	T	G	2.667e^-5	0.809	INTRON CG9338	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	11014100	3R_11014100_SNP [dm3] 3R_15188378_SNP [dm6]	A	T	2.758e^-5	0.809	NON_SYNONYMOUS_CODING Gyc88E	TF binding site mE1_TFBS_cad
3R	19964611	3R_19964611_SNP [dm3] 3R_24138889_SNP [dm6]	C	A	2.766e^-5	0.809	INTRON Npc2f	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18149195	3L_18149195_SNP [dm3] 3L_18156095_SNP [dm6]	C	T	2.815e^-5	0.809	NON_SYNONYMOUS_CODING CG13699
3L	22540042	3L_22540042_SNP [dm3] 3L_22546942_SNP [dm6]	T	A	2.865e^-5	0.809	INTERGENIC
2L	7089169	2L_7089169_SNP [dm3] 2L_7089169_SNP [dm6]	T	C	2.868e^-5	0.809	INTERGENIC
3R	17941991	3R_17941991_SNP [dm3] 3R_22116269_SNP [dm6]	A	G	2.873e^-5	0.809	SYNONYMOUS_CODING Ir94b
2L	13430803	2L_13430803_SNP [dm3] 2L_13430803_SNP [dm6]	G	A	2.876e^-5	0.809	INTRON CG42784
3L	17405348	3L_17405348_SNP [dm3] 3L_17412248_SNP [dm6]	G	A	2.883e^-5	0.809	INTRON blot	TF binding site BDTNP1_TFBS_Med
3L	12157902	3L_12157902_SNP [dm3] 3L_12164802_SNP [dm6]	T	A	2.903e^-5	0.809	UTR_3_PRIME Rh7
3R	23154476	3R_23154476_SNP [dm3] 3R_27328754_SNP [dm6]	T	G	2.981e^-5	0.809	DOWNSTREAM CG3330 INTERGENIC
3R	10534838	3R_10534838_SNP [dm3] 3R_14709116_SNP [dm6]	G	T	2.997e^-5	0.809	INTRON kibra
3L	12817198	3L_12817198_SNP [dm3] 3L_12824098_SNP [dm6]	C	G	3.024e^-5	0.809	SYNONYMOUS_CODING CG42588 DOWNSTREAM CG10960
X	3011817	X_3011817_SNP [dm3] X_3117784_SNP [dm6]	G	T	3.060e^-5	0.809	INTRON kirre	TF binding site BDTNP1_TFBS_dl
2L	6956061	2L_6956061_SNP [dm3] 2L_6956061_SNP [dm6]	T	C	3.060e^-5	0.809	SYNONYMOUS_CODING CG13775 UPSTREAM CG3430	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8533998	2R_8533998_SNP [dm3] 2R_12646493_SNP [dm6]	C	G	3.063e^-5	0.809	INTRON CG8785
2L	7089170	2L_7089170_SNP [dm3] 2L_7089170_SNP [dm6]	T	C	3.143e^-5	0.809	INTERGENIC
3L	9457888	3L_9457888_SNP [dm3] 3L_9464788_SNP [dm6]	T	C	3.150e^-5	0.809	INTRON CG44838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13365634	3L_13365634_SNP [dm3] 3L_13372534_SNP [dm6]	A	T	3.266e^-5	0.822	INTERGENIC
2L	6964591	2L_6964591_SNP [dm3] 2L_6964591_SNP [dm6]	C	G	3.287e^-5	0.822	NON_SYNONYMOUS_CODING Coprox UPSTREAM sip2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26726999	3R_26726999_SNP [dm3] 3R_30901277_SNP [dm6]	C	A	3.446e^-5	0.84	NON_SYNONYMOUS_CODING CG33483 DOWNSTREAM Cyp4c3
X	6219096	X_6219096_SNP [dm3] X_6325063_SNP [dm6]	T	G	3.490e^-5	0.84	NON_SYNONYMOUS_CODING CG15894	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26720416	3R_26720416_SNP [dm3] 3R_30894694_SNP [dm6]	G	A	3.493e^-5	0.84	INTRON Cyp4c3	TF binding site mE1_TFBS_HSA
3R	21275170	3R_21275170_SNP [dm3] 3R_25449448_SNP [dm6]	A	G	3.688e^-5	0.862	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11113468	2R_11113468_SNP [dm3] 2R_15225963_SNP [dm6]	G	C	3.745e^-5	0.862	UPSTREAM CR44370 INTRON Fs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7088623	2L_7088623_SNP [dm3] 2L_7088623_SNP [dm6]	T	A	3.759e^-5	0.862	INTERGENIC
3L	14052556	3L_14052556_SNP [dm3] 3L_14059456_SNP [dm6]	A	G	3.896e^-5	0.862	INTRON CG32138
3R	5768800	3R_5768800_SNP [dm3] 3R_9943078_SNP [dm6]	T	G	3.936e^-5	0.862	INTRON Glut4EF
3L	17405321	3L_17405321_SNP [dm3] 3L_17412221_SNP [dm6]	A	T	3.974e^-5	0.862	INTRON blot	TF binding site BDTNP1_TFBS_Med
X	12088603	X_12088603_SNP [dm3] X_12194570_SNP [dm6]	G	A	3.975e^-5	0.862	INTRON Ten-a
2L	7498096	2L_7498096_SNP [dm3] 2L_7498096_SNP [dm6]	A	T	3.993e^-5	0.862	UTR_3_PRIME RapGAP1 UPSTREAM Obp28a
3R	5120235	3R_5120235_SNP [dm3] 3R_9294513_SNP [dm6]	G	T	3.998e^-5	0.862	UTR_3_PRIME CG8861 DOWNSTREAM CG8861
2L	18222855	2L_18222855_SNP [dm3] 2L_18222855_SNP [dm6]	G	C	4.117e^-5	0.877	INTRON CG42750
2L	14278150	2L_14278150_SNP [dm3] 2L_14278150_SNP [dm6]	A	T	4.196e^-5	0.884	DOWNSTREAM CG32971 INTRON wb
2L	7454579	2L_7454579_SNP [dm3] 2L_7454579_SNP [dm6]	G	A	4.253e^-5	0.886	UPSTREAM Gr28a DOWNSTREAM Gr28b INTERGENIC
2L	3261061	2L_3261061_SNP [dm3] 2L_3261061_SNP [dm6]	A	T	4.497e^-5	0.906	DOWNSTREAM CR45338 EXON CR45337
3L	16617880	3L_16617880_SNP [dm3] 3L_16624780_SNP [dm6]	C	T	4.530e^-5	0.906	NON_SYNONYMOUS_CODING Abl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6958617	2L_6958617_SNP [dm3] 2L_6958617_SNP [dm6]	C	A	4.671e^-5	0.906	DOWNSTREAM Atac1 INTRON CG3430
2L	6964815	2L_6964815_SNP [dm3] 2L_6964815_SNP [dm6]	G	A	4.849e^-5	0.906	SYNONYMOUS_CODING Coprox UPSTREAM sip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18220472	2L_18220472_SNP [dm3] 2L_18220472_SNP [dm6]	C	T	5.175e^-5	0.906	INTRON CG42750
X	11238477	X_11238477_SNP [dm3] X_11344444_SNP [dm6]	A	C	5.212e^-5	0.906	UTR_3_PRIME CG34348 DOWNSTREAM CG1597
3R	23003416	3R_23003416_DEL [dm3] 3R_27177694_DEL [dm6]	ATA	A	5.214e^-5	0.906	INTRON Ser	TF binding site mE1_TFBS_cad
3R	23003431	3R_23003431_SNP [dm3] 3R_27177709_SNP [dm6]	T	G	5.214e^-5	0.906	INTRON Ser	TF binding site mE1_TFBS_cad
3R	23003428	3R_23003428_SNP [dm3] 3R_27177706_SNP [dm6]	A	C	5.231e^-5	0.906	INTRON Ser	TF binding site mE1_TFBS_cad
2R	17243079	2R_17243079_SNP [dm3] 2R_21355574_SNP [dm6]	T	C	5.323e^-5	0.906	UTR_3_PRIME cv-2
2L	18120437	2L_18120437_SNP [dm3] 2L_18120437_SNP [dm6]	A	T	5.348e^-5	0.906	INTRON CG5758
3L	683279	3L_683279_SNP [dm3] 3L_683279_SNP [dm6]	C	G	5.389e^-5	0.906	NON_SYNONYMOUS_CODING ebd1 UPSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22733238	3R_22733238_SNP [dm3] 3R_26907516_SNP [dm6]	T	G	5.429e^-5	0.906	INTRON T48
2R	14696857	2R_14696857_SNP [dm3] 2R_18809352_SNP [dm6]	G	A	5.471e^-5	0.906	SYNONYMOUS_CODING CG15096	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12679763	3L_12679763_SNP [dm3] 3L_12686663_SNP [dm6]	T	C	5.512e^-5	0.906	INTERGENIC
2R	13074576	2R_13074576_SNP [dm3] 2R_17187071_SNP [dm6]	C	A	5.622e^-5	0.906	DOWNSTREAM CR44388 INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	22540043	3L_22540043_SNP [dm3] 3L_22546943_SNP [dm6]	C	T	5.689e^-5	0.906	INTERGENIC
2L	14278144	2L_14278144_SNP [dm3] 2L_14278144_SNP [dm6]	C	A	5.690e^-5	0.906	DOWNSTREAM CG32971 INTRON wb
2R	3662387	2R_3662387_SNP [dm3] 2R_7774882_SNP [dm6]	T	A	5.720e^-5	0.906	INTRON CG30497 & 1 other
3L	1697340	3L_1697340_SNP [dm3] 3L_1697340_SNP [dm6]	A	G	5.775e^-5	0.906	DOWNSTREAM CG12011 INTRON CG7991
2L	5211785	2L_5211785_SNP [dm3] 2L_5211785_SNP [dm6]	A	T	5.844e^-5	0.906	NON_SYNONYMOUS_CODING Cyp28d1 DOWNSTREAM CG7742
2R	6832816	2R_6832816_SNP [dm3] 2R_10945311_SNP [dm6]	A	G	5.861e^-5	0.906	UPSTREAM CR45228 INTERGENIC
2L	8705652	2L_8705652_SNP [dm3] 2L_8705652_SNP [dm6]	A	C	6.084e^-5	0.906	UTR_5_PRIME CG9314 DOWNSTREAM CR44992 INTRON Hnf4
X	17658734	X_17658734_SNP [dm3] X_17764701_SNP [dm6]	C	A	6.152e^-5	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20393653	2R_20393653_SNP [dm3] 2R_24506130_SNP [dm6]	G	A	6.204e^-5	0.906	UPSTREAM CG13581 INTERGENIC
3R	10997129	3R_10997129_SNP [dm3] 3R_15171407_SNP [dm6]	T	G	6.298e^-5	0.906	INTRON Gyc88E & 1 other
2R	19973144	2R_19973144_SNP [dm3] 2R_24085621_SNP [dm6]	C	T	6.304e^-5	0.906	SYNONYMOUS_CODING CG16786 UPSTREAM snama	TF binding site mE1_TFBS_sens
2R	8909662	2R_8909662_DEL [dm3] 2R_13022157_DEL [dm6]	GCCTCATTTCCATTG...	G	6.323e^-5	0.906	INTERGENIC
2R	8909697	2R_8909697_SNP [dm3] 2R_13022192_SNP [dm6]	C	T	6.323e^-5	0.906	INTERGENIC
3R	18252843	3R_18252843_SNP [dm3] 3R_22427121_SNP [dm6]	A	G	6.334e^-5	0.906	SYNONYMOUS_CODING CG13847	TF binding site mE1_TFBS_chinmo
2L	1463996	2L_1463996_SNP [dm3] 2L_1463996_SNP [dm6]	T	C	6.348e^-5	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12496019	3L_12496019_SNP [dm3] 3L_12502919_SNP [dm6]	C	G	6.380e^-5	0.906	SYNONYMOUS_CODING CG10646 DOWNSTREAM CG10681	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3731254	X_3731254_SNP [dm3] X_3837221_SNP [dm6]	G	C	6.383e^-5	0.906	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	9651172	3R_9651172_SNP [dm3] 3R_13825450_SNP [dm6]	T	G	6.442e^-5	0.906	INTERGENIC
3R	24778165	3R_24778165_SNP [dm3] 3R_28952443_SNP [dm6]	G	C	6.466e^-5	0.906	INTRON CG14521
2L	18234375	2L_18234375_SNP [dm3] 2L_18234375_SNP [dm6]	T	G	6.502e^-5	0.906	INTRON CG42750
3R	26719975	3R_26719975_SNP [dm3] 3R_30894253_SNP [dm6]	C	A	6.524e^-5	0.906	NON_SYNONYMOUS_CODING Cyp4c3	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	12397062	X_12397062_MNP [dm3] X_12503029_MNP [dm6]	ATG	TAT	6.615e^-5	0.906	INTRON CG2556
2R	17396974	2R_17396974_SNP [dm3] 2R_21509469_SNP [dm6]	G	A	6.618e^-5	0.906	INTRON MESK2
2L	7088704	2L_7088704_SNP [dm3] 2L_7088704_SNP [dm6]	C	G	6.662e^-5	0.906	INTERGENIC	transposable element FlyBase
3R	26720384	3R_26720384_SNP [dm3] 3R_30894662_SNP [dm6]	C	T	6.700e^-5	0.906	INTRON Cyp4c3	TF binding site mE1_TFBS_HSA
3R	26681935	3R_26681935_SNP [dm3] 3R_30856213_SNP [dm6]	T	A	6.867e^-5	0.906	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8909682	2R_8909682_SNP [dm3] 2R_13022177_SNP [dm6]	G	A	6.906e^-5	0.906	INTERGENIC
2L	7493366	2L_7493366_SNP [dm3] 2L_7493366_SNP [dm6]	A	T	7.073e^-5	0.906	INTRON Ziz
2L	11158576	2L_11158576_SNP [dm3] 2L_11158576_SNP [dm6]	G	A	7.100e^-5	0.906	UTR_3_PRIME Ca-beta
3R	19549737	3R_19549737_SNP [dm3] 3R_23724015_SNP [dm6]	T	C	7.211e^-5	0.906	INTRON CG10365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14043710	3L_14043710_SNP [dm3] 3L_14050610_SNP [dm6]	C	A	7.222e^-5	0.906	UPSTREAM blue & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3R	15208106	3R_15208106_SNP [dm3] 3R_19382384_SNP [dm6]	G	A	7.302e^-5	0.906	INTRON Ino80
2R	13796946	2R_13796946_SNP [dm3] 2R_17909441_SNP [dm6]	C	T	7.316e^-5	0.906	INTRON Elk
3L	5764253	3L_5764253_SNP [dm3] 3L_5771153_SNP [dm6]	G	A	7.382e^-5	0.906	UPSTREAM scny INTRON scny	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	23003397	3R_23003397_SNP [dm3] 3R_27177675_SNP [dm6]	C	A	7.421e^-5	0.906	INTRON Ser	TF binding site mE1_TFBS_cad
2L	12153175	2L_12153175_SNP [dm3] 2L_12153175_SNP [dm6]	A	G	7.451e^-5	0.906	INTRON CG31760
3R	8434772	3R_8434772_SNP [dm3] 3R_12609050_SNP [dm6]	A	T	7.514e^-5	0.906	INTERGENIC
2L	13438961	2L_13438961_SNP [dm3] 2L_13438961_SNP [dm6]	A	G	7.549e^-5	0.906	SYNONYMOUS_CODING Tehao INTRON CG42784 EXON CR45683	TF binding site mE1_TFBS_cad
2L	6971118	2L_6971118_SNP [dm3] 2L_6971118_SNP [dm6]	C	T	7.621e^-5	0.906	SYNONYMOUS_CODING snRNP-U1-70K	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12143534	X_12143534_SNP [dm3] X_12249501_SNP [dm6]	T	A	7.678e^-5	0.906	INTRON Ten-a
2R	17431565	2R_17431565_SNP [dm3] 2R_21544060_SNP [dm6]	C	T	7.761e^-5	0.906	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10412814	3R_10412814_SNP [dm3] 3R_14587092_SNP [dm6]	C	G	7.802e^-5	0.906	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5764579	3L_5764579_SNP [dm3] 3L_5771479_SNP [dm6]	T	C	7.836e^-5	0.906	UTR_5_PRIME scny INTRON scny	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	17405369	3L_17405369_SNP [dm3] 3L_17412269_SNP [dm6]	G	A	7.843e^-5	0.906	INTRON blot	TF binding site BDTNP1_TFBS_Med
3R	26680907	3R_26680907_SNP [dm3] 3R_30855185_SNP [dm6]	A	G	7.854e^-5	0.906	DOWNSTREAM tll INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18034919	3R_18034919_SNP [dm3] 3R_22209197_SNP [dm6]	G	A	7.975e^-5	0.906	INTRON SKIP EXON CR45224
3L	3140789	3L_3140789_SNP [dm3] 3L_3140789_SNP [dm6]	A	G	7.976e^-5	0.906	UPSTREAM CG11537 INTRON CG11537
3R	10413110	3R_10413110_INS [dm3] 3R_14587388_INS [dm6]	T	TAATGT	8.035e^-5	0.906	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26725702	3R_26725702_SNP [dm3] 3R_30899980_SNP [dm6]	T	C	8.036e^-5	0.906	SYNONYMOUS_CODING Cyp4c3 DOWNSTREAM CG33483
X	21902221	X_21902221_SNP [dm3] X_22500385_SNP [dm6]	A	G	8.050e^-5	0.906	INTRON l_1_G0196	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8705651	2L_8705651_SNP [dm3] 2L_8705651_SNP [dm6]	A	C	8.051e^-5	0.906	UTR_5_PRIME CG9314 DOWNSTREAM CR44992 INTRON Hnf4
3R	17090739	3R_17090739_SNP [dm3] 3R_21265017_SNP [dm6]	C	A	8.052e^-5	0.906	UTR_3_PRIME ETHR	TF binding site mE1_TFBS_cad
2L	549912	2L_549912_SNP [dm3] 2L_549912_SNP [dm6]	T	C	8.117e^-5	0.906	UPSTREAM Ets21C INTRON Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7088882	2L_7088882_SNP [dm3] 2L_7088882_SNP [dm6]	C	A	8.222e^-5	0.906	INTERGENIC
2L	16296848	2L_16296848_SNP [dm3] 2L_16296848_SNP [dm6]	T	A	8.353e^-5	0.906	UTR_3_PRIME Cyp303a1 & 1 other DOWNSTREAM Cyp303a1
2L	7493342	2L_7493342_SNP [dm3] 2L_7493342_SNP [dm6]	A	T	8.369e^-5	0.906	INTRON Ziz
2L	13081656	2L_13081656_SNP [dm3] 2L_13081656_SNP [dm6]	T	G	8.395e^-5	0.906	INTERGENIC
2L	5211869	2L_5211869_SNP [dm3] 2L_5211869_SNP [dm6]	C	A	8.418e^-5	0.906	DOWNSTREAM CG7742 INTRON Cyp28d1
2L	9844319	2L_9844319_SNP [dm3] 2L_9844319_SNP [dm6]	C	T	8.423e^-5	0.906	INTRON nAChRalpha6
X	16496168	X_16496168_SNP [dm3] X_16602135_SNP [dm6]	G	A	8.445e^-5	0.906	SYNONYMOUS_CODING Nup153	TF binding site mE1_TFBS_sens
2L	6954297	2L_6954297_SNP [dm3] 2L_6954297_SNP [dm6]	C	A	8.495e^-5	0.906	SYNONYMOUS_CODING SA DOWNSTREAM CG13775
2R	7498343	2R_7498343_SNP [dm3] 2R_11610838_SNP [dm6]	A	G	8.581e^-5	0.906	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12143528	X_12143528_SNP [dm3] X_12249495_SNP [dm6]	A	G	8.615e^-5	0.906	INTRON Ten-a
3L	13980739	3L_13980739_SNP [dm3] 3L_13987639_SNP [dm6]	G	C	8.687e^-5	0.906	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
2R	6701479	2R_6701479_SNP [dm3] 2R_10813974_SNP [dm6]	C	T	8.733e^-5	0.906	UPSTREAM CG12341 INTRON CG7222	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	17839414	2R_17839414_SNP [dm3] 2R_21951909_SNP [dm6]	T	G	8.745e^-5	0.906	NON_SYNONYMOUS_CODING CG13488
3L	13361436	3L_13361436_SNP [dm3] 3L_13368336_SNP [dm6]	T	A	8.792e^-5	0.906	INTERGENIC
3L	11584894	3L_11584894_SNP [dm3] 3L_11591794_SNP [dm6]	A	G	8.823e^-5	0.906	UPSTREAM CG33268 DOWNSTREAM CR45672 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23517676	3R_23517676_SNP [dm3] 3R_27691954_SNP [dm6]	A	G	8.894e^-5	0.906	SYNONYMOUS_CODING CG12880	TF binding site mE1_TFBS_chinmo
X	3731277	X_3731277_SNP [dm3] X_3837244_SNP [dm6]	A	G	8.999e^-5	0.906	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16023742	2R_16023742_SNP [dm3] 2R_20136237_SNP [dm6]	G	C	9.010e^-5	0.906	DOWNSTREAM CR44634 INTERGENIC
X	6740150	X_6740150_SNP [dm3] X_6846117_SNP [dm6]	A	G	9.028e^-5	0.906	SYNONYMOUS_CODING CG4557	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5320712	3L_5320712_SNP [dm3] 3L_5327612_SNP [dm6]	T	A	9.080e^-5	0.906	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6491859	3L_6491859_SNP [dm3] 3L_6498759_SNP [dm6]	G	C	9.089e^-5	0.906	INTRON sfl	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	14253414	2L_14253414_SNP [dm3] 2L_14253414_SNP [dm6]	A	C	9.130e^-5	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	17403708	2R_17403708_SNP [dm3] 2R_21516203_SNP [dm6]	A	G	9.205e^-5	0.906	NON_SYNONYMOUS_CODING MESK2 DOWNSTREAM CG10494
2L	5211851	2L_5211851_DEL [dm3] 2L_5211851_DEL [dm6]	TTA	AC	9.227e^-5	0.906	DOWNSTREAM CG7742 INTRON Cyp28d1
2R	19505776	2R_19505776_SNP [dm3] 2R_23618253_SNP [dm6]	T	C	9.290e^-5	0.906	INTERGENIC
2R	14515312	2R_14515312_SNP [dm3] 2R_18627807_SNP [dm6]	C	T	9.305e^-5	0.906	UPSTREAM Eip55E DOWNSTREAM Sec6 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25624104	3R_25624104_SNP [dm3] 3R_29798382_SNP [dm6]	A	G	9.329e^-5	0.906	SYNONYMOUS_CODING CG7837	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15067379	2R_15067379_SNP [dm3] 2R_19179874_SNP [dm6]	A	T	9.366e^-5	0.906	INTRON hppy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	15220989	2L_15220989_SNP [dm3] 2L_15220989_SNP [dm6]	A	G	9.400e^-5	0.906	INTERGENIC
3L	16581485	3L_16581485_SNP [dm3] 3L_16588385_SNP [dm6]	G	A	9.416e^-5	0.906	UPSTREAM l_3_73Ah DOWNSTREAM CG32163 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	1626144	2L_1626144_SNP [dm3] 2L_1626144_SNP [dm6]	A	T	9.428e^-5	0.906	UPSTREAM CR44603 INTERGENIC
2L	7088772	2L_7088772_SNP [dm3] 2L_7088772_SNP [dm6]	A	T	9.434e^-5	0.906	INTERGENIC	transposable element FlyBase
2L	9133746	2L_9133746_SNP [dm3] 2L_9133746_SNP [dm6]	A	C	9.476e^-5	0.906	INTRON CG32982
3R	17031798	3R_17031798_DEL [dm3] 3R_21206076_DEL [dm6]	GGAGTTGTATAATATATGTC...	T	9.521e^-5	0.906	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19505939	2R_19505939_SNP [dm3] 2R_23618416_SNP [dm6]	C	A	9.562e^-5	0.906	INTERGENIC
2R	17396979	2R_17396979_SNP [dm3] 2R_21509474_SNP [dm6]	T	C	9.625e^-5	0.906	INTRON MESK2
3L	19524452	3L_19524452_SNP [dm3] 3L_19531352_SNP [dm6]	T	C	9.672e^-5	0.906	INTERGENIC
2L	8989871	2L_8989871_SNP [dm3] 2L_8989871_SNP [dm6]	C	T	9.681e^-5	0.906	UPSTREAM rost INTERGENIC
X	21902804	X_21902804_SNP [dm3] X_22500968_SNP [dm6]	C	T	9.693e^-5	0.906	INTRON l_1_G0196
2R	15387783	2R_15387783_SNP [dm3] 2R_19500278_SNP [dm6]	A	G	9.731e^-5	0.906	SYNONYMOUS_STOP CG15120 DOWNSTREAM CG16926
2L	13466047	2L_13466047_SNP [dm3] 2L_13466047_SNP [dm6]	A	G	9.778e^-5	0.906	INTRON CG42784
2R	11172647	2R_11172647_SNP [dm3] 2R_15285142_SNP [dm6]	A	C	9.914e^-5	0.906	INTRON Trpm
2R	13702186	2R_13702186_INS [dm3] 2R_17814681_INS [dm6]	G	GA	9.984e^-5	0.906	UTR_5_PRIME grh INTRON grh	TF binding site BDTNP1_TFBS_dl
3L	13362686	3L_13362686_SNP [dm3] 3L_13369586_SNP [dm6]	G	T	1.005e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9481783	3L_9481783_SNP [dm3] 3L_9488683_SNP [dm6]	C	A	1.018e^-4	0.906	UPSTREAM pall DOWNSTREAM CG32037 INTRON CG32036
2L	14769365	2L_14769365_SNP [dm3] 2L_14769365_SNP [dm6]	T	A	1.024e^-4	0.906	INTERGENIC
3R	26037613	3R_26037613_SNP [dm3] 3R_30211891_SNP [dm6]	C	T	1.032e^-4	0.906	UPSTREAM CecA2 DOWNSTREAM CecA1 & 1 other INTERGENIC
3L	19347489	3L_19347489_SNP [dm3] 3L_19354389_SNP [dm6]	G	T	1.035e^-4	0.906	INTRON CG32206
X	8795160	X_8795160_SNP [dm3] X_8901127_SNP [dm6]	A	G	1.059e^-4	0.906	UPSTREAM CG1885 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23003425	3R_23003425_SNP [dm3] 3R_27177703_SNP [dm6]	T	C	1.064e^-4	0.906	INTRON Ser	TF binding site mE1_TFBS_cad
2L	22137356	2L_22137356_SNP [dm3] 2L_22137356_SNP [dm6]	T	G	1.069e^-4	0.906	INTRON CG42748
2L	7493343	2L_7493343_SNP [dm3] 2L_7493343_SNP [dm6]	G	A	1.074e^-4	0.906	INTRON Ziz
2L	8996686	2L_8996686_SNP [dm3] 2L_8996686_SNP [dm6]	T	A	1.078e^-4	0.906	SPLICE_SITE_REGION alien UPSTREAM CG18661 INTRON alien	TF binding site BDTNP1_TFBS_dl
2L	18214668	2L_18214668_SNP [dm3] 2L_18214668_SNP [dm6]	A	G	1.084e^-4	0.906	INTRON CG42750
3R	21275168	3R_21275168_SNP [dm3] 3R_25449446_SNP [dm6]	C	G	1.098e^-4	0.906	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20181094	3R_20181094_SNP [dm3] 3R_24355372_SNP [dm6]	C	T	1.100e^-4	0.906	DOWNSTREAM Golgin84 INTRON CG6454
3L	13385129	3L_13385129_SNP [dm3] 3L_13392029_SNP [dm6]	T	A	1.109e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14638502	X_14638502_SNP [dm3] X_14744469_SNP [dm6]	T	A	1.113e^-4	0.906	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23003443	3R_23003443_SNP [dm3] 3R_27177721_SNP [dm6]	A	T	1.120e^-4	0.906	INTRON Ser	TF binding site mE1_TFBS_cad
3L	13365418	3L_13365418_SNP [dm3] 3L_13372318_SNP [dm6]	G	A	1.126e^-4	0.906	INTERGENIC
2L	171345	2L_171345_SNP [dm3] 2L_171345_SNP [dm6]	C	G	1.129e^-4	0.906	INTRON spen	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	18149870	3L_18149870_SNP [dm3] 3L_18156770_SNP [dm6]	C	A	1.131e^-4	0.906	INTRON CG13699
3L	16210435	3L_16210435_SNP [dm3] 3L_16217335_SNP [dm6]	G	A	1.131e^-4	0.906	UPSTREAM CG13073 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17243121	2R_17243121_SNP [dm3] 2R_21355616_SNP [dm6]	G	A	1.134e^-4	0.906	UTR_3_PRIME cv-2
3R	23003446	3R_23003446_SNP [dm3] 3R_27177724_SNP [dm6]	A	T	1.145e^-4	0.906	INTRON Ser	TF binding site mE1_TFBS_cad
X	19099065	X_19099065_SNP [dm3] X_19205032_SNP [dm6]	G	A	1.146e^-4	0.906	INTRON Ulp1
2R	8366234	2R_8366234_SNP [dm3] 2R_12478729_SNP [dm6]	G	A	1.148e^-4	0.906	INTRON Dh44-R2
2R	8371843	2R_8371843_SNP [dm3] 2R_12484338_SNP [dm6]	T	C	1.148e^-4	0.906	INTRON Dh44-R2
2L	382173	2L_382173_SNP [dm3] 2L_382173_SNP [dm6]	G	C	1.152e^-4	0.906	INTRON al	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14638496	X_14638496_DEL [dm3] X_14744463_DEL [dm6]	GC	A	1.158e^-4	0.906	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18662429	2R_18662429_SNP [dm3] 2R_22774924_SNP [dm6]	G	A	1.160e^-4	0.906	INTRON CG42260
3L	18149858	3L_18149858_SNP [dm3] 3L_18156758_SNP [dm6]	A	G	1.162e^-4	0.906	INTRON CG13699
2L	11158593	2L_11158593_SNP [dm3] 2L_11158593_SNP [dm6]	A	C	1.164e^-4	0.906	UTR_3_PRIME Ca-beta
3L	6102472	3L_6102472_SNP [dm3] 3L_6109372_SNP [dm6]	C	G	1.166e^-4	0.906	INTRON Ets65A
2L	7502115	2L_7502115_SNP [dm3] 2L_7502115_SNP [dm6]	G	T	1.177e^-4	0.906	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
3L	14710182	3L_14710182_SNP [dm3] 3L_14717082_SNP [dm6]	C	G	1.177e^-4	0.906	INTRON ome	regulatory region REDfly_CRMs
X	8411134	X_8411134_SNP [dm3] X_8517101_SNP [dm6]	A	C	1.181e^-4	0.906	UPSTREAM Nrg DOWNSTREAM CG33181 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
X	11238479	X_11238479_SNP [dm3] X_11344446_SNP [dm6]	C	T	1.183e^-4	0.906	UTR_3_PRIME CG34348 DOWNSTREAM CG1597
2L	22137173	2L_22137173_SNP [dm3] 2L_22137173_SNP [dm6]	C	T	1.184e^-4	0.906	INTRON CG42748
2L	1577289	2L_1577289_INS [dm3] 2L_1577289_INS [dm6]	C	CTCAATTTC	1.186e^-4	0.906	INTRON haf
2L	12552337	2L_12552337_INS [dm3] 2L_12552337_INS [dm6]	A	AT	1.191e^-4	0.906	INTERGENIC
3L	12780106	3L_12780106_SNP [dm3] 3L_12787006_SNP [dm6]	G	A	1.192e^-4	0.906	SYNONYMOUS_CODING Atg1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24100083	3R_24100083_SNP [dm3] 3R_28274361_SNP [dm6]	T	A	1.201e^-4	0.906	INTERGENIC
2R	16549085	2R_16549085_SNP [dm3] 2R_20661580_SNP [dm6]	C	G	1.204e^-4	0.906	UPSTREAM CG13437 DOWNSTREAM Lrt & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	19505713	2R_19505713_SNP [dm3] 2R_23618190_SNP [dm6]	G	A	1.204e^-4	0.906	INTERGENIC
3L	18149861	3L_18149861_SNP [dm3] 3L_18156761_SNP [dm6]	C	T	1.212e^-4	0.906	INTRON CG13699
X	14638499	X_14638499_SNP [dm3] X_14744466_SNP [dm6]	C	A	1.213e^-4	0.906	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15265112	2R_15265112_SNP [dm3] 2R_19377607_SNP [dm6]	T	C	1.214e^-4	0.906	SYNONYMOUS_CODING CG10062	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11113978	2R_11113978_SNP [dm3] 2R_15226473_SNP [dm6]	A	G	1.219e^-4	0.906	UPSTREAM CR44370 INTRON Fs	TF binding site mE1_TFBS_cad
2L	9441417	2L_9441417_SNP [dm3] 2L_9441417_SNP [dm6]	C	T	1.226e^-4	0.906	UPSTREAM CG33723 INTRON numb
3R	2714964	3R_2714964_SNP [dm3] 3R_6889242_SNP [dm6]	T	C	1.226e^-4	0.906	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14507693	2R_14507693_SNP [dm3] 2R_18620188_SNP [dm6]	T	A	1.227e^-4	0.906	UPSTREAM CG5493 DOWNSTREAM Atg7 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	4256294	X_4256294_SNP [dm3] X_4362261_SNP [dm6]	C	T	1.233e^-4	0.906	UTR_3_PRIME norpA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6957421	2L_6957421_SNP [dm3] 2L_6957421_SNP [dm6]	C	T	1.234e^-4	0.906	SYNONYMOUS_CODING CG3430 UPSTREAM CG13775	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9169898	2L_9169898_SNP [dm3] 2L_9169898_SNP [dm6]	G	A	1.240e^-4	0.906	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7495756	2L_7495756_DEL [dm3] 2L_7495756_DEL [dm6]	CGCACACAC	C	1.243e^-4	0.906	UTR_5_PRIME Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23152087	3R_23152087_SNP [dm3] 3R_27326365_SNP [dm6]	A	G	1.247e^-4	0.906	INTERGENIC
3R	19901238	3R_19901238_SNP [dm3] 3R_24075516_SNP [dm6]	C	A	1.256e^-4	0.906	INTRON 4EHP
3L	18547249	3L_18547249_SNP [dm3] 3L_18554149_SNP [dm6]	A	T	1.258e^-4	0.906	INTERGENIC
X	21900307	X_21900307_SNP [dm3] X_22498471_SNP [dm6]	A	G	1.269e^-4	0.906	SYNONYMOUS_CODING l_1_G0196
2L	19995721	2L_19995721_SNP [dm3] 2L_19995721_SNP [dm6]	T	C	1.270e^-4	0.906	INTRON CG43861
2R	845380	2R_845380_SNP [dm3] 2R_4957875_SNP [dm6]	T	A	1.271e^-4	0.906	INTRON Ir41a	transposable element FlyBase
2R	17403724	2R_17403724_SNP [dm3] 2R_21516219_SNP [dm6]	T	A	1.272e^-4	0.906	SYNONYMOUS_CODING MESK2 DOWNSTREAM CG10494
2L	7926010	2L_7926010_SNP [dm3] 2L_7926010_SNP [dm6]	T	C	1.282e^-4	0.906	INTRON Snoo
3R	10409395	3R_10409395_SNP [dm3] 3R_14583673_SNP [dm6]	T	C	1.282e^-4	0.906	INTRON stumps
2R	15667572	2R_15667572_DEL [dm3] 2R_19780067_DEL [dm6]	CAT	C	1.283e^-4	0.906	INTERGENIC
3R	11010231	3R_11010231_SNP [dm3] 3R_15184509_SNP [dm6]	G	C	1.286e^-4	0.906	INTRON Gyc88E	TF binding site mE1_TFBS_cad
2R	14515316	2R_14515316_SNP [dm3] 2R_18627811_SNP [dm6]	T	A	1.290e^-4	0.906	UPSTREAM Eip55E DOWNSTREAM Sec6 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17530287	2R_17530287_SNP [dm3] 2R_21642782_SNP [dm6]	T	C	1.315e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18597699	3R_18597699_SNP [dm3] 3R_22771977_SNP [dm6]	C	G	1.319e^-4	0.919	UPSTREAM CG43094 & 1 other INTRON Usp12-46 & 1 other
2L	18240884	2L_18240884_SNP [dm3] 2L_18240884_SNP [dm6]	T	C	1.339e^-4	0.919	INTRON CG42750
2R	19505523	2R_19505523_SNP [dm3] 2R_23618000_SNP [dm6]	G	T	1.345e^-4	0.919	INTERGENIC
3R	20812497	3R_20812497_SNP [dm3] 3R_24986775_SNP [dm6]	A	C	1.346e^-4	0.919	INTRON tnc
3R	26722383	3R_26722383_SNP [dm3] 3R_30896661_SNP [dm6]	T	C	1.347e^-4	0.919	INTRON Cyp4c3
3L	13980751	3L_13980751_SNP [dm3] 3L_13987651_SNP [dm6]	A	G	1.353e^-4	0.919	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
3R	23799798	3R_23799798_SNP [dm3] 3R_27974076_SNP [dm6]	C	T	1.356e^-4	0.919	INTRON betaTub97EF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10172068	3R_10172068_SNP [dm3] 3R_14346346_SNP [dm6]	A	G	1.359e^-4	0.919	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5285594	2R_5285594_SNP [dm3] 2R_9398089_SNP [dm6]	G	A	1.370e^-4	0.919	SYNONYMOUS_CODING CG8801 UPSTREAM l_2_k10201	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14018583	2R_14018583_SNP [dm3] 2R_18131078_SNP [dm6]	T	A	1.378e^-4	0.919	DOWNSTREAM Dip3 INTRON Hsf
2L	7085030	2L_7085030_SNP [dm3] 2L_7085030_SNP [dm6]	A	T	1.387e^-4	0.919	UPSTREAM Pvf2 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	9131977	2L_9131977_SNP [dm3] 2L_9131977_SNP [dm6]	C	T	1.388e^-4	0.919	INTRON CG32982
2R	15614828	2R_15614828_SNP [dm3] 2R_19727323_SNP [dm6]	G	A	1.390e^-4	0.919	UPSTREAM snoRNA:185 DOWNSTREAM tRNA:E4:56Fb & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
2L	167271	2L_167271_SNP [dm3] 2L_167271_SNP [dm6]	T	G	1.400e^-4	0.919	INTRON spen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	5120248	3R_5120248_DEL [dm3] 3R_9294526_DEL [dm6]	TTTTGGTTCAAACAAAAAA...	T	1.406e^-4	0.919	UTR_3_PRIME CG8861 DOWNSTREAM CG8861
2R	817419	2R_817419_SNP [dm3] 2R_4929914_SNP [dm6]	A	G	1.418e^-4	0.919	INTRON Ir41a
2L	7496084	2L_7496084_INS [dm3] 2L_7496084_INS [dm6]	T	TTCT	1.420e^-4	0.919	UTR_5_PRIME Ziz DOWNSTREAM Obp28a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2053550	3L_2053550_SNP [dm3] 3L_2053550_SNP [dm6]	C	T	1.421e^-4	0.919	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_sens
3R	23493797	3R_23493797_SNP [dm3] 3R_27668075_SNP [dm6]	G	A	1.423e^-4	0.919	SPLICE_SITE_REGION unc80 INTRON unc80
3L	20759720	3L_20759720_SNP [dm3] 3L_20766620_SNP [dm6]	G	A	1.425e^-4	0.919	INTERGENIC
3R	23003429	3R_23003429_SNP [dm3] 3R_27177707_SNP [dm6]	A	C	1.426e^-4	0.919	INTRON Ser	TF binding site mE1_TFBS_cad
2L	12552334	2L_12552334_SNP [dm3] 2L_12552334_SNP [dm6]	A	C	1.436e^-4	0.919	INTERGENIC
3L	16331071	3L_16331071_SNP [dm3] 3L_16337971_SNP [dm6]	C	A	1.441e^-4	0.919	INTERGENIC
2R	16023836	2R_16023836_SNP [dm3] 2R_20136331_SNP [dm6]	T	C	1.445e^-4	0.919	DOWNSTREAM CR44634 INTERGENIC
2L	7088875	2L_7088875_SNP [dm3] 2L_7088875_SNP [dm6]	A	T	1.448e^-4	0.919	INTERGENIC
3L	13980310	3L_13980310_SNP [dm3] 3L_13987210_SNP [dm6]	A	T	1.449e^-4	0.919	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
X	18344263	X_18344263_SNP [dm3] X_18450230_SNP [dm6]	G	T	1.455e^-4	0.919	INTRON CG32547
2L	14253556	2L_14253556_SNP [dm3] 2L_14253556_SNP [dm6]	G	A	1.457e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16728133	3L_16728133_SNP [dm3] 3L_16735033_SNP [dm6]	C	T	1.459e^-4	0.919	INTRON CG9701
X	9127383	X_9127383_SNP [dm3] X_9233350_SNP [dm6]	C	T	1.462e^-4	0.919	SYNONYMOUS_CODING Ir8a UPSTREAM CG12121	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4700429	3L_4700429_SNP [dm3] 3L_4700429_SNP [dm6]	A	G	1.473e^-4	0.919	INTRON RhoGEF64C
2L	12281930	2L_12281930_SNP [dm3] 2L_12281930_SNP [dm6]	T	C	1.477e^-4	0.919	INTRON aret
3L	18149862	3L_18149862_SNP [dm3] 3L_18156762_SNP [dm6]	A	G	1.479e^-4	0.919	INTRON CG13699
2L	1176207	2L_1176207_SNP [dm3] 2L_1176207_SNP [dm6]	C	T	1.484e^-4	0.919	SYNONYMOUS_CODING CG4887	TF binding site BDTNP1_TFBS_sna
3L	9476761	3L_9476761_SNP [dm3] 3L_9483661_SNP [dm6]	A	G	1.493e^-4	0.919	SYNONYMOUS_CODING Jarid2	TF binding site mE1_TFBS_chinmo
X	16598875	X_16598875_SNP [dm3] X_16704842_SNP [dm6]	T	C	1.502e^-4	0.919	NON_SYNONYMOUS_CODING CG4653 UPSTREAM CG9673 INTRON CG4678
2L	17785626	2L_17785626_SNP [dm3] 2L_17785626_SNP [dm6]	T	C	1.509e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	16955833	2L_16955833_SNP [dm3] 2L_16955833_SNP [dm6]	T	G	1.509e^-4	0.919	INTERGENIC
3L	18149106	3L_18149106_SNP [dm3] 3L_18156006_SNP [dm6]	G	A	1.511e^-4	0.919	SYNONYMOUS_CODING CG13699
3R	22733136	3R_22733136_SNP [dm3] 3R_26907414_SNP [dm6]	T	A	1.512e^-4	0.919	INTRON T48
2R	6435275	2R_6435275_SNP [dm3] 2R_10547770_SNP [dm6]	A	T	1.521e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3292704	3L_3292704_SNP [dm3] 3L_3292704_SNP [dm6]	G	A	1.526e^-4	0.919	INTRON CG12009
X	19160852	X_19160852_SNP [dm3] X_19266819_SNP [dm6]	C	T	1.534e^-4	0.919	UTR_3_PRIME CG8010 INTRON Vav
2R	9421541	2R_9421541_SNP [dm3] 2R_13534036_SNP [dm6]	G	A	1.538e^-4	0.919	INTRON Vmat	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	22565789	2L_22565789_SNP [dm3] 2L_22673057_SNP [dm6]	T	C	1.542e^-4	0.919	INTRON CG40006
2L	1009352	2L_1009352_SNP [dm3] 2L_1009352_SNP [dm6]	G	A	1.544e^-4	0.919	UTR_3_PRIME IA-2	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	20724670	X_20724670_SNP [dm3] X_20853643_SNP [dm6]	G	T	1.556e^-4	0.919	INTRON shakB
2L	16630618	2L_16630618_SNP [dm3] 2L_16630618_SNP [dm6]	C	G	1.558e^-4	0.919	INTRON CG42389
2L	17345772	2L_17345772_SNP [dm3] 2L_17345772_SNP [dm6]	T	G	1.559e^-4	0.919	INTERGENIC
2R	9945468	2R_9945468_SNP [dm3] 2R_14057963_SNP [dm6]	C	T	1.569e^-4	0.919	UTR_3_PRIME mam INTRON mam	TF binding site mE1_TFBS_cad
2R	13796934	2R_13796934_INS [dm3] 2R_17909429_INS [dm6]	C	CC	1.571e^-4	0.919	INTRON Elk
3L	12822325	3L_12822325_SNP [dm3] 3L_12829225_SNP [dm6]	A	G	1.573e^-4	0.919	INTRON CG10960
2L	18821645	2L_18821645_SNP [dm3] 2L_18821645_SNP [dm6]	C	T	1.580e^-4	0.919	INTRON CG17324
2R	13510943	2R_13510943_SNP [dm3] 2R_17623438_SNP [dm6]	T	C	1.581e^-4	0.919	INTRON CG10936
3L	6106034	3L_6106034_SNP [dm3] 3L_6112934_SNP [dm6]	A	G	1.585e^-4	0.919	INTRON Ets65A
3R	21033739	3R_21033739_SNP [dm3] 3R_25208017_SNP [dm6]	G	A	1.596e^-4	0.919	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	8342465	3L_8342465_SNP [dm3] 3L_8349365_SNP [dm6]	T	C	1.630e^-4	0.919	SYNONYMOUS_CODING GAPcenA	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	22054914	2L_22054914_SNP [dm3] 2L_22054914_SNP [dm6]	T	C	1.637e^-4	0.919	UPSTREAM CG34173 INTERGENIC
3R	23512635	3R_23512635_SNP [dm3] 3R_27686913_SNP [dm6]	C	T	1.660e^-4	0.919	INTRON CG12880 & 1 other	TF binding site mE1_TFBS_chinmo
2R	6822948	2R_6822948_SNP [dm3] 2R_10935443_SNP [dm6]	T	G	1.664e^-4	0.919	INTERGENIC
2L	13464744	2L_13464744_SNP [dm3] 2L_13464744_SNP [dm6]	G	A	1.664e^-4	0.919	INTRON CG42784
3R	22733207	3R_22733207_SNP [dm3] 3R_26907485_SNP [dm6]	G	A	1.668e^-4	0.919	INTRON T48
X	11545284	X_11545284_SNP [dm3] X_11651251_SNP [dm6]	A	C	1.686e^-4	0.919	INTRON Ptp10D
2L	18508587	2L_18508587_SNP [dm3] 2L_18508587_SNP [dm6]	C	T	1.695e^-4	0.919	UPSTREAM CG10178 INTERGENIC
3R	26722415	3R_26722415_SNP [dm3] 3R_30896693_SNP [dm6]	A	G	1.702e^-4	0.919	INTRON Cyp4c3
2R	3646724	2R_3646724_SNP [dm3] 2R_7759219_SNP [dm6]	C	G	1.707e^-4	0.919	UPSTREAM CG30497 & 1 other INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_z
2L	6964749	2L_6964749_SNP [dm3] 2L_6964749_SNP [dm6]	A	G	1.712e^-4	0.919	SYNONYMOUS_CODING Coprox UPSTREAM sip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8362904	2R_8362904_SNP [dm3] 2R_12475399_SNP [dm6]	T	A	1.712e^-4	0.919	INTRON Dh44-R2
2L	1626131	2L_1626131_SNP [dm3] 2L_1626131_SNP [dm6]	G	A	1.715e^-4	0.919	UPSTREAM CR44603 INTERGENIC
2L	17754657	2L_17754657_SNP [dm3] 2L_17754657_SNP [dm6]	C	T	1.715e^-4	0.919	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5429105	2R_5429105_SNP [dm3] 2R_9541600_SNP [dm6]	G	A	1.716e^-4	0.919	DOWNSTREAM CG1888 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	15220988	2L_15220988_SNP [dm3] 2L_15220988_SNP [dm6]	A	G	1.729e^-4	0.919	INTERGENIC
3L	682872	3L_682872_SNP [dm3] 3L_682872_SNP [dm6]	T	A	1.732e^-4	0.919	UPSTREAM CG3386 DOWNSTREAM ebd1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8363478	2R_8363478_SNP [dm3] 2R_12475973_SNP [dm6]	C	A	1.739e^-4	0.919	INTRON Dh44-R2
2R	17583321	2R_17583321_SNP [dm3] 2R_21695816_SNP [dm6]	G	A	1.743e^-4	0.919	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad
2R	19505926	2R_19505926_SNP [dm3] 2R_23618403_SNP [dm6]	A	C	1.746e^-4	0.919	INTERGENIC
2R	8363002	2R_8363002_SNP [dm3] 2R_12475497_SNP [dm6]	G	C	1.746e^-4	0.919	INTRON Dh44-R2
3R	25375358	3R_25375358_SNP [dm3] 3R_29549636_SNP [dm6]	G	C	1.747e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	17237341	X_17237341_SNP [dm3] X_17343308_SNP [dm6]	A	G	1.748e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7088865	2L_7088865_SNP [dm3] 2L_7088865_SNP [dm6]	T	G	1.759e^-4	0.919	INTERGENIC
3R	23571598	3R_23571598_SNP [dm3] 3R_27745876_SNP [dm6]	G	C	1.760e^-4	0.919	INTRON Ets98B
2L	18256068	2L_18256068_DEL [dm3] 2L_18256068_DEL [dm6]	ACCAGTAGAGAGA...	A	1.760e^-4	0.919	UPSTREAM CR43408 INTRON CG42750	TF binding site mE1_TFBS_HSA
2R	16052732	2R_16052732_SNP [dm3] 2R_20165227_SNP [dm6]	C	T	1.763e^-4	0.919	INTERGENIC
2R	19505705	2R_19505705_SNP [dm3] 2R_23618182_SNP [dm6]	G	A	1.788e^-4	0.919	INTERGENIC
2L	22135578	2L_22135578_INS [dm3] 2L_22135578_INS [dm6]	A	ATTCGAAAAA	1.796e^-4	0.919	INTRON CG42748	transposable element FlyBase
3L	9484115	3L_9484115_SNP [dm3] 3L_9491015_SNP [dm6]	T	C	1.807e^-4	0.919	INTRON CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	19740140	X_19740140_INS [dm3] X_19846107_INS [dm6]	G	GGGGAAAAACC...	1.817e^-4	0.919	UPSTREAM pico INTRON pico
3R	23517682	3R_23517682_SNP [dm3] 3R_27691960_SNP [dm6]	G	A	1.819e^-4	0.919	SYNONYMOUS_CODING CG12880	TF binding site mE1_TFBS_chinmo
2R	5649544	2R_5649544_SNP [dm3] 2R_9762039_SNP [dm6]	T	C	1.820e^-4	0.919	SPLICE_SITE_REGION trpl INTRON trpl	TF binding site mE1_TFBS_cad
3L	4565609	3L_4565609_SNP [dm3] 3L_4565609_SNP [dm6]	A	T	1.825e^-4	0.919	INTRON CG42540	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8334626	2L_8334626_SNP [dm3] 2L_8334626_SNP [dm6]	A	C	1.831e^-4	0.919	INTERGENIC
3R	26742581	3R_26742581_SNP [dm3] 3R_30916859_SNP [dm6]	A	C	1.832e^-4	0.919	INTRON Ptx1	TF binding site BDTNP1_TFBS_da
2R	20044097	2R_20044097_SNP [dm3] 2R_24156574_SNP [dm6]	C	T	1.832e^-4	0.919	INTRON Dat	TF binding site mE1_TFBS_chinmo
X	13435522	X_13435522_SNP [dm3] X_13541489_SNP [dm6]	A	C	1.835e^-4	0.919	INTERGENIC
2L	10976576	2L_10976576_SNP [dm3] 2L_10976576_SNP [dm6]	A	T	1.836e^-4	0.919	UPSTREAM SCAR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	21280862	X_21280862_INS [dm3] X_21409835_INS [dm6]	G	GG	1.836e^-4	0.919	EXON CR45003
2R	16589335	2R_16589335_SNP [dm3] 2R_20701830_SNP [dm6]	A	G	1.838e^-4	0.919	INTRON dpr
3L	3800564	3L_3800564_SNP [dm3] 3L_3800564_SNP [dm6]	A	G	1.857e^-4	0.919	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8702799	2L_8702799_SNP [dm3] 2L_8702799_SNP [dm6]	A	G	1.857e^-4	0.919	UPSTREAM CR44992 INTRON Hnf4	TF binding site BDTNP1_TFBS_twi
3L	18149096	3L_18149096_SNP [dm3] 3L_18155996_SNP [dm6]	C	T	1.858e^-4	0.919	NON_SYNONYMOUS_CODING CG13699
2R	14696758	2R_14696758_SNP [dm3] 2R_18809253_SNP [dm6]	G	T	1.858e^-4	0.919	SYNONYMOUS_CODING CG15096	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25727868	3R_25727868_SNP [dm3] 3R_29902146_SNP [dm6]	A	C	1.873e^-4	0.919	INTRON CG31038
2L	7089108	2L_7089108_SNP [dm3] 2L_7089108_SNP [dm6]	A	T	1.877e^-4	0.919	INTERGENIC
2L	18219643	2L_18219643_SNP [dm3] 2L_18219643_SNP [dm6]	G	A	1.880e^-4	0.919	INTRON CG42750
3L	4565614	3L_4565614_SNP [dm3] 3L_4565614_SNP [dm6]	A	G	1.889e^-4	0.919	INTRON CG42540	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	22079612	2L_22079612_SNP [dm3] 2L_22079612_SNP [dm6]	T	A	1.892e^-4	0.919	UPSTREAM ttm3 INTERGENIC
3L	17435507	3L_17435507_SNP [dm3] 3L_17442407_SNP [dm6]	T	C	1.899e^-4	0.919	INTRON CG18265	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18228830	2L_18228830_SNP [dm3] 2L_18228830_SNP [dm6]	G	T	1.903e^-4	0.919	INTRON CG42750
3L	7278200	3L_7278200_SNP [dm3] 3L_7285100_SNP [dm6]	G	T	1.906e^-4	0.919	UTR_5_PRIME unc-13-4A	TF binding site mE1_TFBS_cad
2R	7451050	2R_7451050_SNP [dm3] 2R_11563545_SNP [dm6]	G	C	1.909e^-4	0.919	INTERGENIC
3L	2435233	3L_2435233_SNP [dm3] 3L_2435233_SNP [dm6]	C	A	1.913e^-4	0.919	NON_SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10809303	3L_10809303_SNP [dm3] 3L_10816203_SNP [dm6]	T	C	1.921e^-4	0.919	UPSTREAM CR45247 DOWNSTREAM CG42831 INTERGENIC
3L	1023852	3L_1023852_SNP [dm3] 3L_1023852_SNP [dm6]	A	G	1.924e^-4	0.919	UPSTREAM trio INTRON trio
2L	11292761	2L_11292761_SNP [dm3] 2L_11292761_SNP [dm6]	T	G	1.929e^-4	0.919	INTERGENIC
3R	23263751	3R_23263751_SNP [dm3] 3R_27438029_SNP [dm6]	G	A	1.942e^-4	0.919	UPSTREAM side DOWNSTREAM CG44290 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16630582	2L_16630582_SNP [dm3] 2L_16630582_SNP [dm6]	A	G	1.946e^-4	0.919	INTRON CG42389
3R	22905245	3R_22905245_SNP [dm3] 3R_27079523_SNP [dm6]	A	G	1.949e^-4	0.919	INTRON CG14257	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7454483	2L_7454483_SNP [dm3] 2L_7454483_SNP [dm6]	T	C	1.950e^-4	0.919	UPSTREAM Gr28a DOWNSTREAM Gr28b INTERGENIC
3R	26216573	3R_26216573_SNP [dm3] 3R_30390851_SNP [dm6]	A	T	1.954e^-4	0.919	DOWNSTREAM Fer2LCH INTERGENIC
2R	17653321	2R_17653321_SNP [dm3] 2R_21765816_SNP [dm6]	C	A	1.962e^-4	0.919	SYNONYMOUS_CODING CG30395 UPSTREAM CR43984
2L	8187697	2L_8187697_SNP [dm3] 2L_8187697_SNP [dm6]	G	A	1.968e^-4	0.919	SYNONYMOUS_CODING Piezo
3L	8220014	3L_8220014_DEL [dm3] 3L_8226914_DEL [dm6]	CTATTTTCTAGAGC...	C	1.970e^-4	0.919	INTERGENIC
2R	19021511	2R_19021511_SNP [dm3] 2R_23133988_SNP [dm6]	T	C	1.973e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	15005121	2L_15005121_SNP [dm3] 2L_15005121_SNP [dm6]	C	G	1.975e^-4	0.919	UPSTREAM dyn-p25 INTERGENIC
2L	21775117	2L_21775117_SNP [dm3] 2L_21775117_SNP [dm6]	T	C	1.976e^-4	0.919	SYNONYMOUS_CODING CG31612	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	21780716	3R_21780716_SNP [dm3] 3R_25954994_SNP [dm6]	T	C	1.976e^-4	0.919	INTRON CCAP-R	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	17671085	3R_17671085_SNP [dm3] 3R_21845363_SNP [dm6]	T	G	1.978e^-4	0.919	UPSTREAM CR44087 & 1 other DOWNSTREAM Gr93d INTERGENIC
3L	19210711	3L_19210711_SNP [dm3] 3L_19217611_SNP [dm6]	G	C	1.991e^-4	0.919	INTRON fz2
3R	22905163	3R_22905163_SNP [dm3] 3R_27079441_SNP [dm6]	C	T	1.992e^-4	0.919	INTRON CG14257	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9122776	2R_9122776_SNP [dm3] 2R_13235271_SNP [dm6]	T	A	1.996e^-4	0.919	UTR_5_PRIME CG4670 UPSTREAM CG4676 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16292838	2L_16292838_SNP [dm3] 2L_16292838_SNP [dm6]	T	A	1.997e^-4	0.919	DOWNSTREAM CG17329 & 1 other INTRON CG13258	TF binding site mE1_TFBS_inv
X	9090609	X_9090609_SNP [dm3] X_9196576_SNP [dm6]	A	T	2.023e^-4	0.919	UPSTREAM CG12118 DOWNSTREAM su_r_ INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7697877	X_7697877_SNP [dm3] X_7803844_SNP [dm6]	T	C	2.030e^-4	0.919	INTERGENIC
3R	13571655	3R_13571655_SNP [dm3] 3R_17745933_SNP [dm6]	G	A	2.033e^-4	0.919	UTR_3_PRIME TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19505920	2R_19505920_SNP [dm3] 2R_23618397_SNP [dm6]	G	C	2.033e^-4	0.919	INTERGENIC
2R	18663175	2R_18663175_SNP [dm3] 2R_22775670_SNP [dm6]	A	T	2.037e^-4	0.919	INTRON CG42260
X	6080363	X_6080363_SNP [dm3] X_6186330_SNP [dm6]	T	A	2.043e^-4	0.919	INTRON Ca-alpha1T
X	9599207	X_9599207_INS [dm3] X_9705174_INS [dm6]	A	AA	2.063e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	169163	2L_169163_SNP [dm3] 2L_169163_SNP [dm6]	A	T	2.065e^-4	0.919	INTRON spen	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	117109	2L_117109_SNP [dm3] 2L_117109_SNP [dm6]	T	A	2.067e^-4	0.919	UTR_3_PRIME CG4822 UPSTREAM CG13694 DOWNSTREAM CG4822 INTRON CG11455
X	19742287	X_19742287_INS [dm3] X_19848254_INS [dm6]	A	AA	2.072e^-4	0.919	UTR_5_PRIME pico INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13154288	2R_13154288_SNP [dm3] 2R_17266783_SNP [dm6]	A	T	2.073e^-4	0.919	INTRON mbl	TF binding site BDTNP1_TFBS_z
3R	26717292	3R_26717292_SNP [dm3] 3R_30891570_SNP [dm6]	C	A	2.075e^-4	0.919	INTERGENIC
X	6130299	X_6130299_SNP [dm3] X_6236266_SNP [dm6]	A	G	2.087e^-4	0.919	DOWNSTREAM CG14446 INTERGENIC
2R	19615897	2R_19615897_SNP [dm3] 2R_23728374_SNP [dm6]	C	A	2.094e^-4	0.919	INTRON Sesn
2L	5211855	2L_5211855_SNP [dm3] 2L_5211855_SNP [dm6]	T	C	2.095e^-4	0.919	DOWNSTREAM CG7742 INTRON Cyp28d1
2L	5211858	2L_5211858_SNP [dm3] 2L_5211858_SNP [dm6]	G	A	2.095e^-4	0.919	DOWNSTREAM CG7742 INTRON Cyp28d1
2R	17395566	2R_17395566_SNP [dm3] 2R_21508061_SNP [dm6]	T	C	2.095e^-4	0.919	INTRON MESK2
2R	17397098	2R_17397098_SNP [dm3] 2R_21509593_SNP [dm6]	G	T	2.103e^-4	0.919	INTRON MESK2
2L	106859	2L_106859_SNP [dm3] 2L_106859_SNP [dm6]	A	G	2.106e^-4	0.919	UPSTREAM Sam-S & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	19237113	X_19237113_SNP [dm3] X_19343080_SNP [dm6]	C	G	2.112e^-4	0.919	INTRON nAChRalpha7
3R	23382906	3R_23382906_SNP [dm3] 3R_27557184_SNP [dm6]	T	G	2.118e^-4	0.919	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
2L	12700473	2L_12700473_SNP [dm3] 2L_12700473_SNP [dm6]	A	G	2.122e^-4	0.919	SYNONYMOUS_CODING CG17036 DOWNSTREAM CG5776	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11555619	2L_11555619_DEL [dm3] 2L_11555619_DEL [dm6]	GC	T	2.131e^-4	0.919	INTERGENIC
2L	7494976	2L_7494976_SNP [dm3] 2L_7494976_SNP [dm6]	C	T	2.135e^-4	0.919	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	917408	2L_917408_SNP [dm3] 2L_917408_SNP [dm6]	T	A	2.137e^-4	0.919	INTRON GluRIIC
X	14844743	X_14844743_SNP [dm3] X_14950710_SNP [dm6]	A	C	2.144e^-4	0.919	UTR_5_PRIME pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9133745	2L_9133745_SNP [dm3] 2L_9133745_SNP [dm6]	G	A	2.147e^-4	0.919	INTRON CG32982
3R	24478218	3R_24478218_SNP [dm3] 3R_28652496_SNP [dm6]	T	A	2.147e^-4	0.919	INTERGENIC
3R	12151000	3R_12151000_SNP [dm3] 3R_16325278_SNP [dm6]	G	C	2.149e^-4	0.919	UPSTREAM CG17929 DOWNSTREAM CG6901 INTRON Sulf1
3L	3140248	3L_3140248_SNP [dm3] 3L_3140248_SNP [dm6]	C	T	2.149e^-4	0.919	UPSTREAM CG11537 INTRON CG11537
3R	19731871	3R_19731871_SNP [dm3] 3R_23906149_SNP [dm6]	T	C	2.150e^-4	0.919	INTRON sba
3L	11585088	3L_11585088_SNP [dm3] 3L_11591988_SNP [dm6]	C	G	2.154e^-4	0.919	UPSTREAM CG33268 DOWNSTREAM CR45672 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6112114	3L_6112114_SNP [dm3] 3L_6119014_SNP [dm6]	T	C	2.156e^-4	0.919	SYNONYMOUS_CODING Ets65A
3R	7929482	3R_7929482_SNP [dm3] 3R_12103760_SNP [dm6]	C	A	2.168e^-4	0.919	INTRON dpr17
2R	16034132	2R_16034132_SNP [dm3] 2R_20146627_SNP [dm6]	A	G	2.174e^-4	0.919	SYNONYMOUS_CODING CG11041
3R	25779570	3R_25779570_SNP [dm3] 3R_29953848_SNP [dm6]	T	G	2.175e^-4	0.919	INTRON TkR99D
3L	13753765	3L_13753765_SNP [dm3] 3L_13760665_SNP [dm6]	T	C	2.193e^-4	0.919	INTRON bru-3
3R	19125696	3R_19125696_SNP [dm3] 3R_23299974_SNP [dm6]	G	A	2.205e^-4	0.919	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15475165	2R_15475165_SNP [dm3] 2R_19587660_SNP [dm6]	G	C	2.222e^-4	0.919	UTR_3_PRIME CG42878 INTRON sm
2L	3601034	2L_3601034_SNP [dm3] 2L_3601034_SNP [dm6]	T	C	2.224e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_sens
X	1668840	X_1668840_SNP [dm3] X_1774807_SNP [dm6]	G	A	2.230e^-4	0.919	UTR_5_PRIME Adar INTRON Adar & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11005890	2L_11005890_SNP [dm3] 2L_11005890_SNP [dm6]	T	C	2.239e^-4	0.919	INTRON Nup154	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	165141	2L_165141_SNP [dm3] 2L_165141_SNP [dm6]	C	T	2.239e^-4	0.919	INTRON spen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16502642	3R_16502642_SNP [dm3] 3R_20676920_SNP [dm6]	G	A	2.242e^-4	0.919	SYNONYMOUS_CODING CG4000 UPSTREAM CR45024	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8035618	3L_8035618_SNP [dm3] 3L_8042518_SNP [dm6]	C	G	2.245e^-4	0.919	INTRON nmo
3R	13429859	3R_13429859_SNP [dm3] 3R_17604137_SNP [dm6]	G	A	2.246e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	12766796	3L_12766796_SNP [dm3] 3L_12773696_SNP [dm6]	A	T	2.248e^-4	0.919	UPSTREAM Hip1 DOWNSTREAM CG32106 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21286440	2L_21286440_SNP [dm3] 2L_21286440_SNP [dm6]	C	A	2.252e^-4	0.919	INTRON Mio
2L	8989496	2L_8989496_DEL [dm3] 2L_8989496_DEL [dm6]	CCCGATC	C	2.288e^-4	0.919	UTR_5_PRIME rost UPSTREAM rost
3R	567135	3R_567135_SNP [dm3] 3R_4741413_SNP [dm6]	C	G	2.291e^-4	0.919	INTRON tacc	TF binding site BDTNP1_TFBS_dl
3L	8393759	3L_8393759_SNP [dm3] 3L_8400659_SNP [dm6]	C	T	2.298e^-4	0.919	SYNONYMOUS_CODING CG7120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18264705	2L_18264705_SNP [dm3] 2L_18264705_SNP [dm6]	C	T	2.304e^-4	0.919	INTRON CG42750
2L	17773448	2L_17773448_SNP [dm3] 2L_17773448_SNP [dm6]	G	T	2.321e^-4	0.919	INTRON CadN
2R	6440673	2R_6440673_SNP [dm3] 2R_10553168_SNP [dm6]	A	G	2.321e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	19080782	X_19080782_SNP [dm3] X_19186749_SNP [dm6]	A	G	2.326e^-4	0.919	SYNONYMOUS_CODING CG33253	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16944148	3R_16944148_SNP [dm3] 3R_21118426_SNP [dm6]	T	A	2.330e^-4	0.919	NON_SYNONYMOUS_CODING Bdbt DOWNSTREAM ppan & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18149162	3L_18149162_SNP [dm3] 3L_18156062_SNP [dm6]	C	T	2.337e^-4	0.919	NON_SYNONYMOUS_CODING CG13699
2L	18254861	2L_18254861_SNP [dm3] 2L_18254861_SNP [dm6]	G	T	2.340e^-4	0.919	INTRON CG42750	TF binding site BDTNP1_TFBS_twi
X	3871861	X_3871861_SNP [dm3] X_3977828_SNP [dm6]	A	T	2.342e^-4	0.919	INTERGENIC
2L	14253548	2L_14253548_SNP [dm3] 2L_14253548_SNP [dm6]	G	A	2.365e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	598982	2R_598982_SNP [dm3] 2R_4711477_SNP [dm6]	A	G	2.372e^-4	0.919	INTRON Nipped-B
2L	7454485	2L_7454485_SNP [dm3] 2L_7454485_SNP [dm6]	C	A	2.379e^-4	0.919	UPSTREAM Gr28a DOWNSTREAM Gr28b INTERGENIC
3L	18149155	3L_18149155_SNP [dm3] 3L_18156055_SNP [dm6]	G	A	2.390e^-4	0.919	NON_SYNONYMOUS_CODING CG13699
3L	2105746	3L_2105746_SNP [dm3] 3L_2105746_SNP [dm6]	A	G	2.395e^-4	0.919	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21779550	2L_21779550_INS [dm3] 2L_21779550_INS [dm6]	C	CTATTCTTATTATC...	2.396e^-4	0.919	INTRON CG31612
2R	19505928	2R_19505928_DEL [dm3] 2R_23618405_DEL [dm6]	ACCAAATA	G	2.405e^-4	0.919	INTERGENIC
3L	16498923	3L_16498923_SNP [dm3] 3L_16505823_SNP [dm6]	G	A	2.417e^-4	0.919	INTRON CG43373
3R	2290419	3R_2290419_SNP [dm3] 3R_6464697_SNP [dm6]	C	T	2.426e^-4	0.919	INTERGENIC
2L	18822097	2L_18822097_SNP [dm3] 2L_18822097_SNP [dm6]	C	T	2.433e^-4	0.919	SYNONYMOUS_CODING CG17324
2L	5365767	2L_5365767_SNP [dm3] 2L_5365767_SNP [dm6]	C	T	2.438e^-4	0.919	DOWNSTREAM nompC INTERGENIC	TF binding site mE1_TFBS_bab1
2L	20555383	2L_20555383_SNP [dm3] 2L_20555383_SNP [dm6]	G	C	2.462e^-4	0.919	INTERGENIC
3R	3286468	3R_3286468_SNP [dm3] 3R_7460746_SNP [dm6]	T	C	2.469e^-4	0.919	INTERGENIC
2R	18439993	2R_18439993_SNP [dm3] 2R_22552488_SNP [dm6]	G	A	2.473e^-4	0.919	DOWNSTREAM CG6018 INTRON px
2L	5211859	2L_5211859_DEL [dm3] 2L_5211859_DEL [dm6]	CG	C	2.475e^-4	0.919	DOWNSTREAM CG7742 INTRON Cyp28d1
3R	16943811	3R_16943811_SNP [dm3] 3R_21118089_SNP [dm6]	G	C	2.475e^-4	0.919	SYNONYMOUS_CODING Bdbt DOWNSTREAM ppan	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	17920080	3R_17920080_SNP [dm3] 3R_22094358_SNP [dm6]	C	T	2.482e^-4	0.919	INTRON CG5778
3R	19800997	3R_19800997_SNP [dm3] 3R_23975275_SNP [dm6]	T	C	2.484e^-4	0.919	SYNONYMOUS_CODING CG31140 INTRON CG31140	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	855753	3L_855753_SNP [dm3] 3L_855753_SNP [dm6]	A	T	2.496e^-4	0.919	INTRON dpr20
3R	22755358	3R_22755358_SNP [dm3] 3R_26929636_SNP [dm6]	T	A	2.514e^-4	0.919	INTRON sda
2L	12552399	2L_12552399_SNP [dm3] 2L_12552399_SNP [dm6]	A	G	2.514e^-4	0.919	INTERGENIC
3L	1082233	3L_1082233_DEL [dm3] 3L_1082233_DEL [dm6]	AGTGCCAGATGAGTTGCGAT...	A	2.517e^-4	0.919	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18240301	2L_18240301_DEL [dm3] 2L_18240301_DEL [dm6]	AGTTTACCGGAA...	A	2.522e^-4	0.919	INTRON CG42750
2L	17494317	2L_17494317_SNP [dm3] 2L_17494317_SNP [dm6]	A	T	2.523e^-4	0.919	INTRON qua
X	10404182	X_10404182_SNP [dm3] X_10510149_SNP [dm6]	A	C	2.527e^-4	0.919	INTRON spri
2L	15205250	2L_15205250_SNP [dm3] 2L_15205250_SNP [dm6]	T	G	2.535e^-4	0.919	INTERGENIC
3R	5371572	3R_5371572_SNP [dm3] 3R_9545850_SNP [dm6]	G	T	2.540e^-4	0.919	INTRON mura	TF binding site mE1_TFBS_sens
X	14757014	X_14757014_SNP [dm3] X_14862981_SNP [dm6]	T	G	2.541e^-4	0.919	DOWNSTREAM CG9518 INTRON Flo2
X	16598001	X_16598001_SNP [dm3] X_16703968_SNP [dm6]	G	C	2.541e^-4	0.919	UPSTREAM CG4653 & 1 other INTRON CG4678	TF binding site mE1_TFBS_chinmo
3L	16260360	3L_16260360_SNP [dm3] 3L_16267260_SNP [dm6]	C	T	2.549e^-4	0.919	SYNONYMOUS_CODING CG4950	TF binding site mE1_TFBS_sens
3L	6101354	3L_6101354_SNP [dm3] 3L_6108254_SNP [dm6]	C	T	2.555e^-4	0.919	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	18228886	2L_18228886_SNP [dm3] 2L_18228886_SNP [dm6]	C	T	2.558e^-4	0.919	INTRON CG42750
2L	7493407	2L_7493407_INS [dm3] 2L_7493407_INS [dm6]	G	GT	2.567e^-4	0.919	INTRON Ziz
3L	8008518	3L_8008518_SNP [dm3] 3L_8015418_SNP [dm6]	C	T	2.569e^-4	0.919	INTRON nmo
2L	6957498	2L_6957498_SNP [dm3] 2L_6957498_SNP [dm6]	T	A	2.570e^-4	0.919	NON_SYNONYMOUS_CODING CG3430 UPSTREAM CG13775	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	20389931	2R_20389931_SNP [dm3] 2R_24502408_SNP [dm6]	A	T	2.570e^-4	0.919	UPSTREAM Prosalpha4T2 INTERGENIC
2L	16857881	2L_16857881_DEL [dm3] 2L_16857881_DEL [dm6]	GT	G	2.576e^-4	0.919	INTRON CG31809	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18264457	2L_18264457_SNP [dm3] 2L_18264457_SNP [dm6]	A	C	2.585e^-4	0.919	INTRON CG42750
3L	10941980	3L_10941980_SNP [dm3] 3L_10948880_SNP [dm6]	C	A	2.587e^-4	0.919	INTERGENIC
2L	18821673	2L_18821673_SNP [dm3] 2L_18821673_SNP [dm6]	T	A	2.593e^-4	0.919	INTRON CG17324
X	8336777	X_8336777_SNP [dm3] X_8442744_SNP [dm6]	T	G	2.594e^-4	0.919	UPSTREAM CG12123 INTERGENIC
X	1670087	X_1670087_SNP [dm3] X_1776054_SNP [dm6]	A	T	2.597e^-4	0.919	INTRON Adar & 1 other
3R	5143021	3R_5143021_SNP [dm3] 3R_9317299_SNP [dm6]	G	A	2.599e^-4	0.919	INTRON CG8861
3L	11547202	3L_11547202_SNP [dm3] 3L_11554102_SNP [dm6]	C	T	2.616e^-4	0.919	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	9012737	X_9012737_SNP [dm3] X_9118704_SNP [dm6]	A	G	2.624e^-4	0.919	DOWNSTREAM AP-1gamma INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	14095081	2R_14095081_SNP [dm3] 2R_18207576_SNP [dm6]	T	C	2.632e^-4	0.919	UPSTREAM CG30114 INTERGENIC
2R	5289179	2R_5289179_SNP [dm3] 2R_9401674_SNP [dm6]	T	C	2.639e^-4	0.919	DOWNSTREAM wun INTRON wun
2L	13430666	2L_13430666_SNP [dm3] 2L_13430666_SNP [dm6]	C	T	2.639e^-4	0.919	INTRON CG42784
3R	22690387	3R_22690387_SNP [dm3] 3R_26864665_SNP [dm6]	G	A	2.664e^-4	0.919	UTR_3_PRIME ball DOWNSTREAM IntS12	TF binding site mE1_TFBS_HSA
2L	18297221	2L_18297221_SNP [dm3] 2L_18297221_SNP [dm6]	C	T	2.672e^-4	0.919	UTR_3_PRIME CG5790
X	19072635	X_19072635_DEL [dm3] X_19178602_DEL [dm6]	GCTAACTAAAGG...	G	2.674e^-4	0.919	INTRON CG7556	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	13361683	3L_13361683_SNP [dm3] 3L_13368583_SNP [dm6]	T	C	2.679e^-4	0.919	INTERGENIC
X	3871842	X_3871842_INS [dm3] X_3977809_INS [dm6]	A	ACTTGGTTTGGCTCAAAATT...	2.683e^-4	0.919	INTERGENIC
2L	17345817	2L_17345817_SNP [dm3] 2L_17345817_SNP [dm6]	A	T	2.685e^-4	0.919	INTERGENIC
3R	21126332	3R_21126332_SNP [dm3] 3R_25300610_SNP [dm6]	T	G	2.692e^-4	0.919	UPSTREAM CG13659 INTERGENIC
3L	15753693	3L_15753693_SNP [dm3] 3L_15760593_SNP [dm6]	A	T	2.694e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13357010	2L_13357010_INS [dm3] 2L_13357010_INS [dm6]	T	TTTTA	2.699e^-4	0.919	INTERGENIC
2L	3374768	2L_3374768_SNP [dm3] 2L_3374768_SNP [dm6]	T	C	2.699e^-4	0.919	SYNONYMOUS_CODING CG15412	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	683253	3L_683253_SNP [dm3] 3L_683253_SNP [dm6]	G	T	2.700e^-4	0.919	NON_SYNONYMOUS_CODING ebd1 UPSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15124615	2L_15124615_SNP [dm3] 2L_15124615_SNP [dm6]	C	T	2.706e^-4	0.919	INTERGENIC
2R	6435284	2R_6435284_SNP [dm3] 2R_10547779_SNP [dm6]	G	T	2.708e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16880183	3R_16880183_SNP [dm3] 3R_21054461_SNP [dm6]	A	G	2.723e^-4	0.919	DOWNSTREAM Mvl INTRON Mvl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26219624	3R_26219624_SNP [dm3] 3R_30393902_SNP [dm6]	A	T	2.725e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16384108	2R_16384108_SNP [dm3] 2R_20496603_SNP [dm6]	T	C	2.741e^-4	0.919	INTERGENIC
2L	5961345	2L_5961345_SNP [dm3] 2L_5961345_SNP [dm6]	G	A	2.743e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	682852	3L_682852_SNP [dm3] 3L_682852_SNP [dm6]	T	A	2.765e^-4	0.919	UPSTREAM CG3386 DOWNSTREAM ebd1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	19487347	2R_19487347_SNP [dm3] 2R_23599824_SNP [dm6]	G	A	2.766e^-4	0.919	SPLICE_SITE_REGION CG42559 & 1 other UTR_3_PRIME CG42559 DOWNSTREAM apt INTRON CG42559 & 1 other
3R	19880061	3R_19880061_SNP [dm3] 3R_24054339_SNP [dm6]	A	C	2.767e^-4	0.919	UPSTREAM CG6000 & 1 other DOWNSTREAM CG5991 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16674042	2L_16674042_SNP [dm3] 2L_16674042_SNP [dm6]	G	T	2.780e^-4	0.919	INTRON Trpgamma
X	13809632	X_13809632_SNP [dm3] X_13915599_SNP [dm6]	T	C	2.784e^-4	0.919	INTRON mamo
3L	7402585	3L_7402585_SNP [dm3] 3L_7409485_SNP [dm6]	T	C	2.789e^-4	0.919	INTRON CR44525 EXON CR44525
3R	17793374	3R_17793374_SNP [dm3] 3R_21967652_SNP [dm6]	C	T	2.790e^-4	0.919	INTRON Eip93F
2L	18221608	2L_18221608_SNP [dm3] 2L_18221608_SNP [dm6]	G	A	2.794e^-4	0.919	INTRON CG42750
3R	19504092	3R_19504092_SNP [dm3] 3R_23678370_SNP [dm6]	G	A	2.812e^-4	0.919	UTR_3_PRIME CG13822 UPSTREAM CG10157	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4141342	2L_4141342_SNP [dm3] 2L_4141342_SNP [dm6]	T	A	2.813e^-4	0.919	INTERGENIC
3L	16434231	3L_16434231_SNP [dm3] 3L_16441131_SNP [dm6]	A	G	2.816e^-4	0.919	INTRON CG33158 & 1 other
3R	10172088	3R_10172088_SNP [dm3] 3R_14346366_SNP [dm6]	A	C	2.819e^-4	0.919	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12934630	3L_12934630_SNP [dm3] 3L_12941530_SNP [dm6]	A	T	2.820e^-4	0.919	INTERGENIC
3R	3286382	3R_3286382_SNP [dm3] 3R_7460660_SNP [dm6]	A	C	2.839e^-4	0.919	INTERGENIC
X	12397005	X_12397005_SNP [dm3] X_12502972_SNP [dm6]	A	T	2.840e^-4	0.919	INTRON CG2556
3R	14089477	3R_14089477_SNP [dm3] 3R_18263755_SNP [dm6]	C	T	2.840e^-4	0.919	INTERGENIC
3R	14089483	3R_14089483_SNP [dm3] 3R_18263761_SNP [dm6]	C	T	2.840e^-4	0.919	INTERGENIC
X	3918834	X_3918834_DEL [dm3] X_4024801_DEL [dm6]	AA	A	2.850e^-4	0.919	INTERGENIC
2L	1575055	2L_1575055_SNP [dm3] 2L_1575055_SNP [dm6]	C	A	2.862e^-4	0.919	INTRON haf
2R	15667671	2R_15667671_SNP [dm3] 2R_19780166_SNP [dm6]	C	T	2.867e^-4	0.919	INTERGENIC
3L	17958943	3L_17958943_DEL [dm3] 3L_17965843_DEL [dm6]	CT	C	2.870e^-4	0.919	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	2715128	3R_2715128_SNP [dm3] 3R_6889406_SNP [dm6]	G	A	2.873e^-4	0.919	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26037375	3R_26037375_SNP [dm3] 3R_30211653_SNP [dm6]	A	G	2.880e^-4	0.919	UPSTREAM CecA2 DOWNSTREAM CecA1 INTRON Cec-Psi1
3R	26037380	3R_26037380_SNP [dm3] 3R_30211658_SNP [dm6]	C	T	2.880e^-4	0.919	UPSTREAM CecA2 DOWNSTREAM CecA1 INTRON Cec-Psi1
X	14757015	X_14757015_SNP [dm3] X_14862982_SNP [dm6]	T	C	2.891e^-4	0.919	DOWNSTREAM CG9518 INTRON Flo2
2L	5365690	2L_5365690_SNP [dm3] 2L_5365690_SNP [dm6]	T	C	2.911e^-4	0.919	UTR_3_PRIME nompC DOWNSTREAM nompC	TF binding site mE1_TFBS_bab1
2L	7491822	2L_7491822_SNP [dm3] 2L_7491822_SNP [dm6]	G	T	2.913e^-4	0.919	INTRON Ziz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	18888461	3L_18888461_SNP [dm3] 3L_18895361_SNP [dm6]	G	T	2.923e^-4	0.919	DOWNSTREAM snoRNA:Psi28S-2566 INTRON CG3902
2R	17403571	2R_17403571_SNP [dm3] 2R_21516066_SNP [dm6]	T	A	2.932e^-4	0.919	SYNONYMOUS_CODING MESK2 DOWNSTREAM CG10494
3R	26087755	3R_26087755_SNP [dm3] 3R_30262033_SNP [dm6]	C	T	2.932e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	16589337	2R_16589337_SNP [dm3] 2R_20701832_SNP [dm6]	A	G	2.934e^-4	0.919	INTRON dpr
3L	4748409	3L_4748409_SNP [dm3] 3L_4748409_SNP [dm6]	C	T	2.935e^-4	0.919	INTRON RhoGEF64C
2L	7088871	2L_7088871_SNP [dm3] 2L_7088871_SNP [dm6]	C	T	2.935e^-4	0.919	INTERGENIC
2L	2684255	2L_2684255_SNP [dm3] 2L_2684255_SNP [dm6]	G	A	2.941e^-4	0.919	INTRON CG31690
2R	7342279	2R_7342279_SNP [dm3] 2R_11454774_SNP [dm6]	G	A	2.942e^-4	0.919	INTRON E_Pc_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9140041	3L_9140041_SNP [dm3] 3L_9146941_SNP [dm6]	T	A	2.943e^-4	0.919	UTR_3_PRIME Rdl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3L	1751907	3L_1751907_SNP [dm3] 3L_1751907_SNP [dm6]	A	T	2.948e^-4	0.919	UTR_3_PRIME CG13921 DOWNSTREAM Cht2
2R	14697949	2R_14697949_SNP [dm3] 2R_18810444_SNP [dm6]	A	G	2.951e^-4	0.919	INTRON CG15096
2L	18235492	2L_18235492_SNP [dm3] 2L_18235492_SNP [dm6]	C	T	2.953e^-4	0.919	INTRON CG42750	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	13387212	3L_13387212_SNP [dm3] 3L_13394112_SNP [dm6]	G	C	2.956e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	17942047	3R_17942047_SNP [dm3] 3R_22116325_SNP [dm6]	G	A	2.966e^-4	0.919	SYNONYMOUS_CODING Ir94b
X	16496366	X_16496366_SNP [dm3] X_16602333_SNP [dm6]	A	C	2.970e^-4	0.919	SYNONYMOUS_CODING Nup153	TF binding site mE1_TFBS_sens
X	4224881	X_4224881_DEL [dm3] X_4330848_DEL [dm6]	ACT	A	2.971e^-4	0.919	INTRON norpA
2L	3889665	2L_3889665_SNP [dm3] 2L_3889665_SNP [dm6]	G	C	2.971e^-4	0.919	NON_SYNONYMOUS_CODING capu UTR_5_PRIME capu UPSTREAM capu INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_kn mE1_TFBS_ttk
2L	17141349	2L_17141349_SNP [dm3] 2L_17141349_SNP [dm6]	A	G	2.972e^-4	0.919	INTRON beat-IIIa & 1 other	regulatory region REDfly_CRMs
3L	16320668	3L_16320668_SNP [dm3] 3L_16327568_SNP [dm6]	T	C	2.984e^-4	0.919	NON_SYNONYMOUS_CODING CG13038 UPSTREAM CG13040 & 1 other
2L	1032744	2L_1032744_SNP [dm3] 2L_1032744_SNP [dm6]	T	A	2.997e^-4	0.919	INTRON IA-2
2L	21006712	2L_21006712_SNP [dm3] 2L_21006712_SNP [dm6]	T	G	3.004e^-4	0.919	INTRON CG42238
X	9119160	X_9119160_SNP [dm3] X_9225127_SNP [dm6]	T	A	3.014e^-4	0.919	UPSTREAM CG15370 INTERGENIC
2R	16728910	2R_16728910_SNP [dm3] 2R_20841405_SNP [dm6]	A	T	3.015e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12398197	2L_12398197_SNP [dm3] 2L_12398197_SNP [dm6]	A	T	3.017e^-4	0.919	UPSTREAM Pkd2 DOWNSTREAM bru-2 INTERGENIC
3R	6368189	3R_6368189_SNP [dm3] 3R_10542467_SNP [dm6]	A	T	3.019e^-4	0.919	INTRON hth	TF binding site BDTNP1_TFBS_dl
2L	19802374	2L_19802374_SNP [dm3] 2L_19802374_SNP [dm6]	A	T	3.019e^-4	0.919	INTRON sick
2L	10946542	2L_10946542_SNP [dm3] 2L_10946542_SNP [dm6]	T	C	3.020e^-4	0.919	INTRON dpr2
3R	20531349	3R_20531349_SNP [dm3] 3R_24705627_SNP [dm6]	C	T	3.021e^-4	0.919	SYNONYMOUS_CODING slo	TF binding site mE1_TFBS_chinmo
3L	16728186	3L_16728186_INS [dm3] 3L_16735086_INS [dm6]	A	CTTTATTAAATAGTC...	3.021e^-4	0.919	INTRON CG9701
2L	9441408	2L_9441408_SNP [dm3] 2L_9441408_SNP [dm6]	C	T	3.023e^-4	0.919	UPSTREAM CG33723 INTRON numb
3R	9711002	3R_9711002_SNP [dm3] 3R_13885280_SNP [dm6]	C	T	3.038e^-4	0.919	INTERGENIC
3R	3332155	3R_3332155_SNP [dm3] 3R_7506433_SNP [dm6]	A	G	3.051e^-4	0.919	INTERGENIC
2R	7497619	2R_7497619_SNP [dm3] 2R_11610114_SNP [dm6]	T	C	3.054e^-4	0.919	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13245837	3L_13245837_SNP [dm3] 3L_13252737_SNP [dm6]	A	G	3.062e^-4	0.919	INTRON caps
2R	18759419	2R_18759419_DEL [dm3] 2R_22871896_DEL [dm6]	CC	C	3.069e^-4	0.919	INTRON CG13532	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	551932	2L_551932_SNP [dm3] 2L_551932_SNP [dm6]	C	A	3.072e^-4	0.919	START_GAINED Ets21C UTR_5_PRIME Ets21C
3R	25259144	3R_25259144_SNP [dm3] 3R_29433422_SNP [dm6]	C	A	3.072e^-4	0.919	INTRON Ptp99A
3R	17717273	3R_17717273_DEL [dm3] 3R_21891551_DEL [dm6]	TGT	T	3.101e^-4	0.919	INTRON CG6678
X	10107875	X_10107875_SNP [dm3] X_10213842_SNP [dm6]	C	T	3.107e^-4	0.919	INTRON l_1_G0230	TF binding site mE1_TFBS_sens
2R	14696860	2R_14696860_SNP [dm3] 2R_18809355_SNP [dm6]	T	G	3.111e^-4	0.919	SYNONYMOUS_CODING CG15096	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5959756	3L_5959756_SNP [dm3] 3L_5966656_SNP [dm6]	G	A	3.118e^-4	0.919	DOWNSTREAM CG10479 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	15748236	2L_15748236_SNP [dm3] 2L_15748236_SNP [dm6]	G	A	3.123e^-4	0.919	UPSTREAM CycE EXON CR44866	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	111525	2L_111525_SNP [dm3] 2L_111525_SNP [dm6]	T	C	3.124e^-4	0.919	DOWNSTREAM Sam-S INTRON Sam-S
2R	7337023	2R_7337023_SNP [dm3] 2R_11449518_SNP [dm6]	A	G	3.130e^-4	0.919	UTR_3_PRIME qvr
3L	22526049	3L_22526049_SNP [dm3] 3L_22532949_SNP [dm6]	T	G	3.131e^-4	0.919	INTERGENIC	transposable element FlyBase
3R	21383056	3R_21383056_SNP [dm3] 3R_25557334_SNP [dm6]	C	T	3.132e^-4	0.919	INTRON msi
3R	10172974	3R_10172974_INS [dm3] 3R_14347252_INS [dm6]	G	GAG	3.136e^-4	0.919	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10049578	2L_10049578_SNP [dm3] 2L_10049578_SNP [dm6]	T	C	3.139e^-4	0.919	UPSTREAM CG33301 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19887693	3R_19887693_SNP [dm3] 3R_24061971_SNP [dm6]	C	T	3.148e^-4	0.919	SYNONYMOUS_CODING SMC1
2L	18264841	2L_18264841_SNP [dm3] 2L_18264841_SNP [dm6]	C	T	3.152e^-4	0.919	INTRON CG42750
2R	19505943	2R_19505943_SNP [dm3] 2R_23618420_SNP [dm6]	A	G	3.169e^-4	0.919	INTERGENIC
2L	17698277	2L_17698277_SNP [dm3] 2L_17698277_SNP [dm6]	A	G	3.173e^-4	0.919	INTRON CadN
2L	18256048	2L_18256048_SNP [dm3] 2L_18256048_SNP [dm6]	A	T	3.177e^-4	0.919	UPSTREAM CR43408 INTRON CG42750	TF binding site mE1_TFBS_HSA
2L	6953646	2L_6953646_SNP [dm3] 2L_6953646_SNP [dm6]	G	A	3.184e^-4	0.919	SYNONYMOUS_CODING SA DOWNSTREAM CG13775	TF binding site mE1_TFBS_sens
3R	26036692	3R_26036692_SNP [dm3] 3R_30210970_SNP [dm6]	T	C	3.186e^-4	0.919	NON_SYNONYMOUS_CODING CecA1 UPSTREAM Cec-Psi1 DOWNSTREAM Anp
2L	15734661	2L_15734661_SNP [dm3] 2L_15734661_SNP [dm6]	T	A	3.197e^-4	0.919	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	1032743	2L_1032743_SNP [dm3] 2L_1032743_SNP [dm6]	A	G	3.201e^-4	0.919	INTRON IA-2
2L	12576850	2L_12576850_SNP [dm3] 2L_12576850_SNP [dm6]	A	T	3.202e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3958470	X_3958470_SNP [dm3] X_4064437_SNP [dm6]	G	T	3.207e^-4	0.919	INTERGENIC
2R	5287317	2R_5287317_SNP [dm3] 2R_9399812_SNP [dm6]	G	C	3.211e^-4	0.919	UTR_3_PRIME CG33774 & 1 other DOWNSTREAM wun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	17586662	3L_17586662_INS [dm3] 3L_17593562_INS [dm6]	T	TTTT	3.214e^-4	0.919	INTRON Eip74EF
2R	17156344	2R_17156344_SNP [dm3] 2R_21268839_SNP [dm6]	G	C	3.216e^-4	0.919	INTRON Rgk3
3L	13358274	3L_13358274_SNP [dm3] 3L_13365174_SNP [dm6]	T	C	3.233e^-4	0.919	INTERGENIC
3R	18569451	3R_18569451_SNP [dm3] 3R_22743729_SNP [dm6]	T	G	3.237e^-4	0.919	NON_SYNONYMOUS_CODING vret DOWNSTREAM CG6985	TF binding site mE1_TFBS_cad
X	20722803	X_20722803_SNP [dm3] X_20851776_SNP [dm6]	T	G	3.248e^-4	0.919	INTRON shakB
2L	8129633	2L_8129633_SNP [dm3] 2L_8129633_SNP [dm6]	C	A	3.264e^-4	0.919	INTRON CG8668
2L	11911543	2L_11911543_DEL [dm3] 2L_11911543_DEL [dm6]	CT	C	3.275e^-4	0.919	INTRON Pde1c
2L	20994441	2L_20994441_SNP [dm3] 2L_20994441_SNP [dm6]	A	T	3.289e^-4	0.919	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
2L	19769874	2L_19769874_SNP [dm3] 2L_19769874_SNP [dm6]	G	A	3.298e^-4	0.919	UPSTREAM bsh INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18661517	2R_18661517_SNP [dm3] 2R_22774012_SNP [dm6]	A	G	3.299e^-4	0.919	INTRON CG42260
2R	9969891	2R_9969891_SNP [dm3] 2R_14082386_SNP [dm6]	T	C	3.300e^-4	0.919	INTRON Prosap
2R	6705510	2R_6705510_SNP [dm3] 2R_10818005_SNP [dm6]	A	C	3.302e^-4	0.919	SYNONYMOUS_CODING dgo	TF binding site mE1_TFBS_sens
X	13458156	X_13458156_INS [dm3] X_13564123_INS [dm6]	T	TGCGTGTTTGT...	3.321e^-4	0.919	UTR_5_PRIME Tango13 DOWNSTREAM CG32633	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	12021444	X_12021444_SNP [dm3] X_12127411_SNP [dm6]	G	A	3.324e^-4	0.919	UPSTREAM Ten-a INTRON Ten-a
X	8765565	X_8765565_SNP [dm3] X_8871532_SNP [dm6]	T	C	3.326e^-4	0.919	SYNONYMOUS_CODING CG12075	TF binding site mE1_TFBS_chinmo
3L	681813	3L_681813_SNP [dm3] 3L_681813_SNP [dm6]	C	A	3.327e^-4	0.919	INTRON CG3386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15205251	2L_15205251_SNP [dm3] 2L_15205251_SNP [dm6]	G	T	3.333e^-4	0.919	INTERGENIC
3L	16576012	3L_16576012_SNP [dm3] 3L_16582912_SNP [dm6]	G	C	3.344e^-4	0.919	UPSTREAM Rpn12 DOWNSTREAM CR43727 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
X	16496867	X_16496867_SNP [dm3] X_16602834_SNP [dm6]	A	G	3.349e^-4	0.919	SYNONYMOUS_CODING Nup153	TF binding site mE1_TFBS_sens
2L	13529846	2L_13529846_SNP [dm3] 2L_13529846_SNP [dm6]	C	A	3.359e^-4	0.919	UPSTREAM CG33642 DOWNSTREAM CG33641 INTRON B4
X	19740028	X_19740028_DEL [dm3] X_19845995_DEL [dm6]	CTT	C	3.368e^-4	0.919	UPSTREAM pico INTRON pico	TF binding site BDTNP1_TFBS_prd
2L	5211973	2L_5211973_SNP [dm3] 2L_5211973_SNP [dm6]	C	A	3.372e^-4	0.919	NON_SYNONYMOUS_CODING Cyp28d1 DOWNSTREAM CG7742
2L	21786168	2L_21786168_DEL [dm3] 2L_21786168_DEL [dm6]	TGTTTTGATTTTTGTACTAT...	T	3.378e^-4	0.919	INTRON CG31612
2L	13221361	2L_13221361_SNP [dm3] 2L_13221361_SNP [dm6]	C	T	3.382e^-4	0.919	UTR_3_PRIME CG5705 DOWNSTREAM Ski6	TF binding site BDTNP1_TFBS_Med
2L	7061147	2L_7061147_DEL [dm3] 2L_7061147_DEL [dm6]	ACAGCAA	A	3.383e^-4	0.919	UPSTREAM CG31907
3L	13350917	3L_13350917_SNP [dm3] 3L_13357817_SNP [dm6]	T	G	3.385e^-4	0.919	DOWNSTREAM Nplp2 INTERGENIC
X	6806475	X_6806475_SNP [dm3] X_6912442_SNP [dm6]	G	T	3.397e^-4	0.919	INTRON CG14431
X	3982937	X_3982937_SNP [dm3] X_4088904_SNP [dm6]	A	G	3.399e^-4	0.919	INTRON CG43689	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	895379	2L_895379_SNP [dm3] 2L_895379_SNP [dm6]	C	G	3.417e^-4	0.919	INTERGENIC
2R	11110217	2R_11110217_SNP [dm3] 2R_15222712_SNP [dm6]	C	A	3.433e^-4	0.919	NON_SYNONYMOUS_CODING CG8079 UTR_3_PRIME CG8079 DOWNSTREAM Fs	TF binding site mE1_TFBS_HSA
3L	11055718	3L_11055718_SNP [dm3] 3L_11062618_SNP [dm6]	A	T	3.439e^-4	0.919	UPSTREAM CG32069 DOWNSTREAM CG32075 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	1667573	X_1667573_SNP [dm3] X_1773540_SNP [dm6]	G	A	3.441e^-4	0.919	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	1376540	3L_1376540_SNP [dm3] 3L_1376540_SNP [dm6]	G	A	3.450e^-4	0.919	INTRON Ptp61F & 1 other
X	20560181	X_20560181_INS [dm3] X_20689154_INS [dm6]	C	CT	3.458e^-4	0.919	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
3R	7929479	3R_7929479_SNP [dm3] 3R_12103757_SNP [dm6]	A	G	3.464e^-4	0.919	INTRON dpr17
X	14515248	X_14515248_SNP [dm3] X_14621215_SNP [dm6]	G	C	3.472e^-4	0.919	INTRON NetA
3R	19901136	3R_19901136_SNP [dm3] 3R_24075414_SNP [dm6]	T	C	3.485e^-4	0.919	INTRON 4EHP
2L	14277385	2L_14277385_SNP [dm3] 2L_14277385_SNP [dm6]	A	T	3.488e^-4	0.919	UTR_5_PRIME CG32971 INTRON wb
3R	19901315	3R_19901315_SNP [dm3] 3R_24075593_SNP [dm6]	G	C	3.489e^-4	0.919	INTRON 4EHP
2L	10055455	2L_10055455_SNP [dm3] 2L_10055455_SNP [dm6]	T	G	3.499e^-4	0.919	SYNONYMOUS_CODING Cpr31A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7498383	2R_7498383_SNP [dm3] 2R_11610878_SNP [dm6]	G	T	3.500e^-4	0.919	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19171676	2R_19171676_SNP [dm3] 2R_23284153_SNP [dm6]	A	G	3.500e^-4	0.919	UPSTREAM CG13541 & 1 other INTERGENIC
3L	13296156	3L_13296156_DEL [dm3] 3L_13303056_DEL [dm6]	CAC	A	3.518e^-4	0.919	UPSTREAM CR44555 DOWNSTREAM CR43911 EXON CR44557
3R	10492726	3R_10492726_SNP [dm3] 3R_14667004_SNP [dm6]	A	G	3.525e^-4	0.919	SYNONYMOUS_CODING Meltrin DOWNSTREAM Meltrin	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19504273	3R_19504273_SNP [dm3] 3R_23678551_SNP [dm6]	G	A	3.525e^-4	0.919	UPSTREAM CG10157 DOWNSTREAM CG13822 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9772716	2L_9772716_SNP [dm3] 2L_9772716_SNP [dm6]	C	A	3.526e^-4	0.919	SYNONYMOUS_CODING ppk16 DOWNSTREAM ppk11
3L	13630999	3L_13630999_SNP [dm3] 3L_13637899_SNP [dm6]	G	A	3.530e^-4	0.919	INTRON bru-3
2L	6501173	2L_6501173_DEL [dm3] 2L_6501173_DEL [dm6]	ACAA	A	3.549e^-4	0.919	INTRON CG31637	TF binding site mE1_TFBS_sens
3R	15376973	3R_15376973_SNP [dm3] 3R_19551251_SNP [dm6]	A	G	3.551e^-4	0.919	INTRON Dys
2L	17805504	2L_17805504_SNP [dm3] 2L_17805504_SNP [dm6]	G	A	3.554e^-4	0.919	INTRON CadN2
3L	11547204	3L_11547204_INS [dm3] 3L_11554104_INS [dm6]	A	AAAACGTAGTTT...	3.557e^-4	0.919	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	13157570	3L_13157570_INS [dm3] 3L_13164470_INS [dm6]	C	GGAGGA	3.557e^-4	0.919	INTERGENIC
2L	9086768	2L_9086768_SNP [dm3] 2L_9086768_SNP [dm6]	G	A	3.567e^-4	0.919	NON_SYNONYMOUS_CODING Toll-4
3L	17586019	3L_17586019_SNP [dm3] 3L_17592919_SNP [dm6]	C	T	3.573e^-4	0.919	INTRON Eip74EF
3R	24962136	3R_24962136_SNP [dm3] 3R_29136414_SNP [dm6]	G	A	3.576e^-4	0.919	NON_SYNONYMOUS_CODING Vha100-1	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	1301332	3L_1301332_SNP [dm3] 3L_1301332_SNP [dm6]	G	T	3.579e^-4	0.919	UTR_3_PRIME Rac1 DOWNSTREAM scf
2L	8395910	2L_8395910_SNP [dm3] 2L_8395910_SNP [dm6]	C	T	3.579e^-4	0.919	NON_SYNONYMOUS_CODING Peritrophin-15a UPSTREAM Peritrophin-15b & 1 other DOWNSTREAM CR45343
2L	1671705	2L_1671705_SNP [dm3] 2L_1671705_SNP [dm6]	A	G	3.579e^-4	0.919	INTRON chinmo
2L	5526401	2L_5526401_SNP [dm3] 2L_5526401_SNP [dm6]	T	C	3.589e^-4	0.919	SYNONYMOUS_CODING Cap-D3 UPSTREAM CG31648 DOWNSTREAM CG6907 EXON CR44793	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	6993125	2R_6993125_SNP [dm3] 2R_11105620_SNP [dm6]	C	T	3.592e^-4	0.919	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	5211965	2L_5211965_SNP [dm3] 2L_5211965_SNP [dm6]	G	T	3.606e^-4	0.919	NON_SYNONYMOUS_CODING Cyp28d1 DOWNSTREAM CG7742
2R	12262218	2R_12262218_SNP [dm3] 2R_16374713_SNP [dm6]	C	T	3.608e^-4	0.919	INTERGENIC
2L	22344667	2L_22344667_SNP [dm3] 2L_22344667_SNP [dm6]	G	A	3.614e^-4	0.919	INTRON CG17018	transposable element FlyBase
3R	24761489	3R_24761489_SNP [dm3] 3R_28935767_SNP [dm6]	A	T	3.614e^-4	0.919	INTRON CG14521
3R	22823034	3R_22823034_SNP [dm3] 3R_26997312_SNP [dm6]	C	T	3.615e^-4	0.919	UTR_5_PRIME RYa-R DOWNSTREAM TwdlC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16361930	2L_16361930_SNP [dm3] 2L_16361930_SNP [dm6]	A	G	3.617e^-4	0.919	INTERGENIC
2L	18508525	2L_18508525_SNP [dm3] 2L_18508525_SNP [dm6]	C	A	3.627e^-4	0.919	INTERGENIC
3L	11279307	3L_11279307_SNP [dm3] 3L_11286207_SNP [dm6]	C	T	3.650e^-4	0.919	INTERGENIC
X	6080712	X_6080712_SNP [dm3] X_6186679_SNP [dm6]	G	A	3.650e^-4	0.919	INTRON Ca-alpha1T
3L	5386749	3L_5386749_SNP [dm3] 3L_5393649_SNP [dm6]	A	C	3.653e^-4	0.919	INTERGENIC
3L	9482099	3L_9482099_SNP [dm3] 3L_9488999_SNP [dm6]	A	G	3.653e^-4	0.919	DOWNSTREAM CG32037 INTRON CG32036
2L	18240063	2L_18240063_SNP [dm3] 2L_18240063_SNP [dm6]	A	C	3.654e^-4	0.919	INTRON CG42750
2L	8809372	2L_8809372_INS [dm3] 2L_8809372_INS [dm6]	C	CG	3.659e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	20777033	3R_20777033_SNP [dm3] 3R_24951311_SNP [dm6]	C	T	3.661e^-4	0.919	INTERGENIC
2L	7499308	2L_7499308_SNP [dm3] 2L_7499308_SNP [dm6]	T	C	3.675e^-4	0.919	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad
2L	20597892	2L_20597892_SNP [dm3] 2L_20597892_SNP [dm6]	C	T	3.676e^-4	0.919	INTRON CR44909
3R	23514358	3R_23514358_SNP [dm3] 3R_27688636_SNP [dm6]	C	A	3.678e^-4	0.919	UPSTREAM CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo
3R	26583342	3R_26583342_SNP [dm3] 3R_30757620_SNP [dm6]	C	A	3.692e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	7454482	2L_7454482_SNP [dm3] 2L_7454482_SNP [dm6]	G	T	3.701e^-4	0.919	UPSTREAM Gr28a DOWNSTREAM Gr28b INTERGENIC
3L	937497	3L_937497_SNP [dm3] 3L_937497_SNP [dm6]	T	C	3.706e^-4	0.919	INTRON Glut1
2L	4141334	2L_4141334_DEL [dm3] 2L_4141334_DEL [dm6]	TT	T	3.707e^-4	0.919	INTERGENIC
3L	2434596	3L_2434596_SNP [dm3] 3L_2434596_SNP [dm6]	T	G	3.712e^-4	0.919	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	1665797	X_1665797_SNP [dm3] X_1771764_SNP [dm6]	C	A	3.715e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	6863737	X_6863737_SNP [dm3] X_6969704_SNP [dm6]	G	T	3.726e^-4	0.919	UPSTREAM CG32732 & 1 other DOWNSTREAM CG14431 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	19080287	X_19080287_SNP [dm3] X_19186254_SNP [dm6]	A	T	3.750e^-4	0.919	INTRON CG33253	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5526345	2L_5526345_SNP [dm3] 2L_5526345_SNP [dm6]	A	C	3.750e^-4	0.919	NON_SYNONYMOUS_CODING Cap-D3 UPSTREAM CG31648 DOWNSTREAM CG6907 EXON CR44793	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	12262005	2R_12262005_SNP [dm3] 2R_16374500_SNP [dm6]	A	G	3.755e^-4	0.919	INTERGENIC
3R	20898525	3R_20898525_INS [dm3] 3R_25072803_INS [dm6]	A	AA	3.758e^-4	0.919	UTR_3_PRIME CG9996 DOWNSTREAM CG11836
X	12890841	X_12890841_SNP [dm3] X_12996808_SNP [dm6]	C	G	3.758e^-4	0.919	INTRON rad	TF binding site BDTNP1_TFBS_twi
2R	14507877	2R_14507877_SNP [dm3] 2R_18620372_SNP [dm6]	T	A	3.762e^-4	0.919	DOWNSTREAM Atg7 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14189801	2L_14189801_SNP [dm3] 2L_14189801_SNP [dm6]	T	A	3.766e^-4	0.919	INTRON Dyrk2
2R	14680801	2R_14680801_INS [dm3] 2R_18793296_INS [dm6]	C	CGTAC	3.771e^-4	0.919	INTRON CG15080
3R	26087764	3R_26087764_SNP [dm3] 3R_30262042_SNP [dm6]	A	T	3.776e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_Kr
X	13809649	X_13809649_SNP [dm3] X_13915616_SNP [dm6]	T	C	3.777e^-4	0.919	INTRON mamo
2R	12262111	2R_12262111_SNP [dm3] 2R_16374606_SNP [dm6]	A	T	3.778e^-4	0.919	INTERGENIC
3L	16604789	3L_16604789_SNP [dm3] 3L_16611689_SNP [dm6]	G	A	3.785e^-4	0.919	SYNONYMOUS_CODING Su_P_ UPSTREAM CG4101	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	14966534	2R_14966534_SNP [dm3] 2R_19079029_SNP [dm6]	G	T	3.787e^-4	0.919	INTRON 5-HT1A
3R	17793506	3R_17793506_SNP [dm3] 3R_21967784_SNP [dm6]	G	A	3.794e^-4	0.919	INTRON Eip93F
3R	26720535	3R_26720535_SNP [dm3] 3R_30894813_SNP [dm6]	T	A	3.797e^-4	0.919	INTRON Cyp4c3
2L	7088614	2L_7088614_SNP [dm3] 2L_7088614_SNP [dm6]	A	G	3.798e^-4	0.919	INTERGENIC
2R	16242944	2R_16242944_SNP [dm3] 2R_20355439_SNP [dm6]	T	A	3.809e^-4	0.919	UPSTREAM CG11192 INTERGENIC
2R	8918240	2R_8918240_SNP [dm3] 2R_13030735_SNP [dm6]	C	T	3.818e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_sens
3L	12773132	3L_12773132_SNP [dm3] 3L_12780032_SNP [dm6]	A	C	3.825e^-4	0.919	SYNONYMOUS_CODING CG10969	TF binding site mE1_TFBS_sens
X	15848007	X_15848007_SNP [dm3] X_15953974_SNP [dm6]	A	T	3.831e^-4	0.919	INTRON mmd
2L	18228842	2L_18228842_SNP [dm3] 2L_18228842_SNP [dm6]	A	G	3.837e^-4	0.919	INTRON CG42750
3L	13631001	3L_13631001_SNP [dm3] 3L_13637901_SNP [dm6]	G	A	3.849e^-4	0.919	INTRON bru-3
2L	20293157	2L_20293157_SNP [dm3] 2L_20293157_SNP [dm6]	A	G	3.849e^-4	0.919	INTERGENIC
2L	458580	2L_458580_SNP [dm3] 2L_458580_SNP [dm6]	G	A	3.851e^-4	0.919	UTR_3_PRIME CG4133 DOWNSTREAM CG4297	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18672531	2R_18672531_SNP [dm3] 2R_22785026_SNP [dm6]	T	C	3.864e^-4	0.919	DOWNSTREAM CG30270 INTRON CG42260
2L	895337	2L_895337_SNP [dm3] 2L_895337_SNP [dm6]	G	A	3.878e^-4	0.919	INTERGENIC
2L	18722165	2L_18722165_SNP [dm3] 2L_18722165_SNP [dm6]	C	T	3.878e^-4	0.919	INTRON CG10348
2L	18222782	2L_18222782_SNP [dm3] 2L_18222782_SNP [dm6]	A	T	3.882e^-4	0.919	INTRON CG42750
2R	15255925	2R_15255925_SNP [dm3] 2R_19368420_SNP [dm6]	T	C	3.884e^-4	0.919	NON_SYNONYMOUS_CODING CG9416
2R	15255935	2R_15255935_SNP [dm3] 2R_19368430_SNP [dm6]	T	A	3.884e^-4	0.919	SYNONYMOUS_CODING CG9416
2L	18821661	2L_18821661_SNP [dm3] 2L_18821661_SNP [dm6]	G	T	3.891e^-4	0.919	INTRON CG17324
2L	12171779	2L_12171779_SNP [dm3] 2L_12171779_SNP [dm6]	G	A	3.891e^-4	0.919	SYNONYMOUS_CODING CG6583 DOWNSTREAM CG17217
2R	16529056	2R_16529056_SNP [dm3] 2R_20641551_SNP [dm6]	T	A	3.893e^-4	0.919	UTR_3_PRIME maf-S UPSTREAM rig & 1 other DOWNSTREAM CG33785 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	7088676	2L_7088676_SNP [dm3] 2L_7088676_SNP [dm6]	T	A	3.895e^-4	0.919	INTERGENIC	transposable element FlyBase
2R	16589344	2R_16589344_SNP [dm3] 2R_20701839_SNP [dm6]	A	G	3.900e^-4	0.919	INTRON dpr
3L	2688774	3L_2688774_DEL [dm3] 3L_2688774_DEL [dm6]	CCTTTC	C	3.900e^-4	0.919	INTRON Fife
3L	17435362	3L_17435362_INS [dm3] 3L_17442262_INS [dm6]	T	TATGT	3.905e^-4	0.919	INTRON CG18265	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17345818	2L_17345818_SNP [dm3] 2L_17345818_SNP [dm6]	T	G	3.906e^-4	0.919	INTERGENIC
3L	6250837	3L_6250837_SNP [dm3] 3L_6257737_SNP [dm6]	G	A	3.909e^-4	0.919	SYNONYMOUS_CODING CG10163
3R	13492424	3R_13492424_SNP [dm3] 3R_17666702_SNP [dm6]	G	A	3.911e^-4	0.919	UPSTREAM CR45045 INTRON CG14322	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26109393	3R_26109393_SNP [dm3] 3R_30283671_SNP [dm6]	G	T	3.912e^-4	0.919	INTRON hdc
3L	13365395	3L_13365395_SNP [dm3] 3L_13372295_SNP [dm6]	A	T	3.914e^-4	0.919	INTERGENIC
2L	7452668	2L_7452668_SNP [dm3] 2L_7452668_SNP [dm6]	A	T	3.935e^-4	0.919	INTRON Gr28a	TF binding site mE1_TFBS_HSA
3R	10171644	3R_10171644_SNP [dm3] 3R_14345922_SNP [dm6]	C	A	3.941e^-4	0.919	INTRON NK7.1
2L	15852010	2L_15852010_SNP [dm3] 2L_15852010_SNP [dm6]	G	T	3.942e^-4	0.919	UPSTREAM CG13243 INTERGENIC
2L	7300997	2L_7300997_SNP [dm3] 2L_7300997_SNP [dm6]	G	A	3.948e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3420698	2L_3420698_SNP [dm3] 2L_3420698_SNP [dm6]	C	A	3.948e^-4	0.919	INTRON pgant2
3R	22733421	3R_22733421_SNP [dm3] 3R_26907699_SNP [dm6]	G	C	3.949e^-4	0.919	INTRON T48
2L	8893798	2L_8893798_SNP [dm3] 2L_8893798_SNP [dm6]	T	C	3.950e^-4	0.919	INTERGENIC
2L	972277	2L_972277_SNP [dm3] 2L_972277_SNP [dm6]	C	T	3.954e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16033796	2R_16033796_SNP [dm3] 2R_20146291_SNP [dm6]	A	C	3.956e^-4	0.919	SYNONYMOUS_CODING CG11041
2R	15667655	2R_15667655_SNP [dm3] 2R_19780150_SNP [dm6]	A	T	3.961e^-4	0.919	INTERGENIC
2L	7511042	2L_7511042_SNP [dm3] 2L_7511042_SNP [dm6]	G	T	3.963e^-4	0.919	INTRON RapGAP1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13150739	3L_13150739_SNP [dm3] 3L_13157639_SNP [dm6]	A	T	3.968e^-4	0.919	INTERGENIC
3R	19072131	3R_19072131_SNP [dm3] 3R_23246409_SNP [dm6]	C	T	3.977e^-4	0.919	INTRON CG4467
3R	21412641	3R_21412641_SNP [dm3] 3R_25586919_SNP [dm6]	C	T	3.978e^-4	0.919	INTRON msi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18149115	3L_18149115_SNP [dm3] 3L_18156015_SNP [dm6]	A	G	3.983e^-4	0.919	SYNONYMOUS_CODING CG13699
3R	17030019	3R_17030019_SNP [dm3] 3R_21204297_SNP [dm6]	A	G	3.987e^-4	0.919	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5309319	3L_5309319_SNP [dm3] 3L_5316219_SNP [dm6]	A	G	3.993e^-4	0.919	EXON CR45741
3R	26729558	3R_26729558_DEL [dm3] 3R_30903836_DEL [dm6]	TACTGTT	T	3.995e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11611012	2L_11611012_SNP [dm3] 2L_11611012_SNP [dm6]	C	T	4.008e^-4	0.919	NON_SYNONYMOUS_CODING spag4 INTRON kek2
2R	18165534	2R_18165534_SNP [dm3] 2R_22278029_SNP [dm6]	C	T	4.014e^-4	0.919	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26717243	3R_26717243_SNP [dm3] 3R_30891521_SNP [dm6]	T	A	4.016e^-4	0.919	INTERGENIC
3L	5377308	3L_5377308_INS [dm3] 3L_5384208_INS [dm6]	A	AAA	4.016e^-4	0.919	INTERGENIC
3R	22626378	3R_22626378_SNP [dm3] 3R_26800656_SNP [dm6]	T	A	4.019e^-4	0.919	INTRON Tl	TF binding site BDTNP1_TFBS_twi
3L	12696516	3L_12696516_SNP [dm3] 3L_12703416_SNP [dm6]	C	G	4.025e^-4	0.919	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8114387	2L_8114387_DEL [dm3] 2L_8114387_DEL [dm6]	CA	C	4.027e^-4	0.919	UTR_3_PRIME Bsg
3L	16573109	3L_16573109_SNP [dm3] 3L_16580009_SNP [dm6]	G	T	4.030e^-4	0.919	UPSTREAM nxf2 DOWNSTREAM Smn INTRON nxf2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	20865746	2L_20865746_SNP [dm3] 2L_20865746_SNP [dm6]	G	A	4.032e^-4	0.919	INTRON CG9338	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	107389	2L_107389_SNP [dm3] 2L_107389_SNP [dm6]	C	T	4.033e^-4	0.919	UPSTREAM Nhe1 & 1 other INTRON Sam-S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4635922	3L_4635922_SNP [dm3] 3L_4635922_SNP [dm6]	C	A	4.037e^-4	0.919	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
X	19879817	X_19879817_SNP [dm3] X_19985784_SNP [dm6]	G	A	4.039e^-4	0.919	INTERGENIC
3R	16898224	3R_16898224_SNP [dm3] 3R_21072502_SNP [dm6]	G	C	4.044e^-4	0.919	SYNONYMOUS_CODING r-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6701665	2R_6701665_SNP [dm3] 2R_10814160_SNP [dm6]	A	C	4.045e^-4	0.919	SYNONYMOUS_CODING CG7222 UPSTREAM CG12341	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	15401384	3L_15401384_SNP [dm3] 3L_15408284_SNP [dm6]	T	G	4.045e^-4	0.919	DOWNSTREAM CG33259 INTERGENIC
2R	7339866	2R_7339866_SNP [dm3] 2R_11452361_SNP [dm6]	G	T	4.065e^-4	0.919	UTR_5_PRIME E_Pc_ UPSTREAM E_Pc_ DOWNSTREAM qvr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	9014927	2L_9014927_SNP [dm3] 2L_9014927_SNP [dm6]	G	T	4.070e^-4	0.919	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13358271	3L_13358271_SNP [dm3] 3L_13365171_SNP [dm6]	A	T	4.072e^-4	0.919	INTERGENIC
3L	1944767	3L_1944767_SNP [dm3] 3L_1944767_SNP [dm6]	T	A	4.073e^-4	0.919	NON_SYNONYMOUS_CODING mu2
2L	9915941	2L_9915941_SNP [dm3] 2L_9915941_SNP [dm6]	T	C	4.082e^-4	0.919	DOWNSTREAM Srp54 INTRON yip2
X	15848013	X_15848013_SNP [dm3] X_15953980_SNP [dm6]	G	A	4.082e^-4	0.919	INTRON mmd
2L	18222783	2L_18222783_SNP [dm3] 2L_18222783_SNP [dm6]	A	C	4.087e^-4	0.919	INTRON CG42750
2R	18515924	2R_18515924_SNP [dm3] 2R_22628419_SNP [dm6]	A	C	4.119e^-4	0.919	SYNONYMOUS_CODING CG33143
2R	15667647	2R_15667647_SNP [dm3] 2R_19780142_SNP [dm6]	T	A	4.120e^-4	0.919	INTERGENIC
X	12675849	X_12675849_SNP [dm3] X_12781816_SNP [dm6]	C	T	4.123e^-4	0.919	INTRON CG32647
2L	6957659	2L_6957659_SNP [dm3] 2L_6957659_SNP [dm6]	G	T	4.124e^-4	0.919	NON_SYNONYMOUS_CODING CG3430 UPSTREAM CG13775	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	22336149	2L_22336149_SNP [dm3] 2L_22336149_SNP [dm6]	C	T	4.130e^-4	0.919	INTRON CG17018	transposable element FlyBase
2L	18935245	2L_18935245_SNP [dm3] 2L_18935245_SNP [dm6]	A	G	4.130e^-4	0.919	INTRON ssp3	TF binding site mE1_TFBS_HSA
X	22055499	X_22055499_SNP [dm3] X_22653663_SNP [dm6]	A	C	4.143e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5386585	3L_5386585_SNP [dm3] 3L_5393485_SNP [dm6]	T	G	4.155e^-4	0.919	INTERGENIC
3L	9565043	3L_9565043_SNP [dm3] 3L_9571943_SNP [dm6]	G	A	4.159e^-4	0.919	INTRON CG42673
2R	12860226	2R_12860226_SNP [dm3] 2R_16972721_SNP [dm6]	G	C	4.169e^-4	0.919	INTERGENIC
X	3011813	X_3011813_SNP [dm3] X_3117780_SNP [dm6]	T	A	4.170e^-4	0.919	INTRON kirre	TF binding site BDTNP1_TFBS_dl
2L	12336647	2L_12336647_SNP [dm3] 2L_12336647_SNP [dm6]	G	T	4.174e^-4	0.919	INTERGENIC
X	16585121	X_16585121_SNP [dm3] X_16691088_SNP [dm6]	T	G	4.177e^-4	0.919	INTRON Sep4
2L	15205484	2L_15205484_SNP [dm3] 2L_15205484_SNP [dm6]	G	A	4.178e^-4	0.919	INTERGENIC
3L	13150724	3L_13150724_SNP [dm3] 3L_13157624_SNP [dm6]	T	C	4.179e^-4	0.919	INTERGENIC
2L	21200843	2L_21200843_SNP [dm3] 2L_21200843_SNP [dm6]	A	C	4.187e^-4	0.919	UPSTREAM CG31624 DOWNSTREAM CG31988 INTERGENIC	transposable element FlyBase
3R	19558076	3R_19558076_SNP [dm3] 3R_23732354_SNP [dm6]	T	C	4.195e^-4	0.919	SYNONYMOUS_CODING Rpn9 UPSTREAM Hmgcr DOWNSTREAM CG10365	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	6435259	2R_6435259_SNP [dm3] 2R_10547754_SNP [dm6]	C	T	4.215e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	13510979	2R_13510979_SNP [dm3] 2R_17623474_SNP [dm6]	C	G	4.219e^-4	0.919	INTRON CG10936
3R	15376788	3R_15376788_SNP [dm3] 3R_19551066_SNP [dm6]	G	A	4.221e^-4	0.919	INTRON Dys
3L	1016153	3L_1016153_SNP [dm3] 3L_1016153_SNP [dm6]	C	A	4.221e^-4	0.919	INTRON trio
2R	8548871	2R_8548871_SNP [dm3] 2R_12661366_SNP [dm6]	T	C	4.224e^-4	0.919	START_GAINED nemy UTR_5_PRIME nemy INTRON nemy
3R	26169697	3R_26169697_SNP [dm3] 3R_30343975_SNP [dm6]	G	T	4.235e^-4	0.919	INTRON hdc	TF binding site BDTNP1_TFBS_dl
X	20724934	X_20724934_SNP [dm3] X_20853907_SNP [dm6]	T	G	4.235e^-4	0.919	INTRON shakB
2L	9012963	2L_9012963_SNP [dm3] 2L_9012963_SNP [dm6]	T	C	4.239e^-4	0.919	UTR_3_PRIME CG13102 & 1 other DOWNSTREAM CG13102	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	11624707	2R_11624707_SNP [dm3] 2R_15737202_SNP [dm6]	C	G	4.244e^-4	0.919	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23516839	3R_23516839_SNP [dm3] 3R_27691117_SNP [dm6]	A	T	4.253e^-4	0.919	INTRON CG12880	TF binding site mE1_TFBS_chinmo
2L	11555627	2L_11555627_SNP [dm3] 2L_11555627_SNP [dm6]	T	C	4.258e^-4	0.919	INTERGENIC
2R	19505996	2R_19505996_SNP [dm3] 2R_23618473_SNP [dm6]	G	T	4.261e^-4	0.919	INTERGENIC
X	15850233	X_15850233_SNP [dm3] X_15956200_SNP [dm6]	T	A	4.267e^-4	0.919	INTRON mmd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3L	1368869	3L_1368869_DEL [dm3] 3L_1368869_DEL [dm6]	AA	A	4.271e^-4	0.919	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3449386	3R_3449386_SNP [dm3] 3R_7623664_SNP [dm6]	A	G	4.274e^-4	0.919	INTRON CG34127	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19739709	3R_19739709_SNP [dm3] 3R_23913987_SNP [dm6]	G	A	4.275e^-4	0.919	INTRON sba	TF binding site mE1_TFBS_Kr
2L	7448174	2L_7448174_SNP [dm3] 2L_7448174_SNP [dm6]	T	A	4.276e^-4	0.919	UTR_5_PRIME santa-maria INTRON santa-maria
X	21503853	X_21503853_SNP [dm3] X_21632826_SNP [dm6]	T	C	4.286e^-4	0.919	INTERGENIC	transposable element FlyBase
3L	16605657	3L_16605657_SNP [dm3] 3L_16612557_SNP [dm6]	A	C	4.288e^-4	0.919	UTR_5_PRIME CG4101 UPSTREAM Su_P_ DOWNSTREAM Mo25	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2L	6956744	2L_6956744_SNP [dm3] 2L_6956744_SNP [dm6]	C	G	4.290e^-4	0.919	SYNONYMOUS_CODING CG13775 UPSTREAM CG3430 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	16162757	3L_16162757_SNP [dm3] 3L_16169657_SNP [dm6]	C	G	4.292e^-4	0.919	INTRON CG33796
2L	6957011	2L_6957011_SNP [dm3] 2L_6957011_SNP [dm6]	C	T	4.295e^-4	0.919	UTR_5_PRIME CG3430 UPSTREAM CG13775	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	6957527	2L_6957527_SNP [dm3] 2L_6957527_SNP [dm6]	C	G	4.295e^-4	0.919	NON_SYNONYMOUS_CODING CG3430 UPSTREAM CG13775	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6959626	2L_6959626_SNP [dm3] 2L_6959626_SNP [dm6]	T	C	4.295e^-4	0.919	NON_SYNONYMOUS_CODING Atac1 UPSTREAM CG10399 DOWNSTREAM CG3430	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6959645	2L_6959645_SNP [dm3] 2L_6959645_SNP [dm6]	A	C	4.295e^-4	0.919	SYNONYMOUS_CODING Atac1 UPSTREAM CG10399 DOWNSTREAM CG3430	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18275147	2L_18275147_SNP [dm3] 2L_18275147_SNP [dm6]	T	G	4.304e^-4	0.919	INTRON CG42750
3R	16871150	3R_16871150_SNP [dm3] 3R_21045428_SNP [dm6]	G	C	4.307e^-4	0.919	SYNONYMOUS_CODING CG31189 DOWNSTREAM CG12278 & 1 other	TF binding site mE1_TFBS_HSA
X	1313697	X_1313697_SNP [dm3] X_1419664_SNP [dm6]	G	A	4.308e^-4	0.919	INTRON futsch	TF binding site mE1_TFBS_chinmo
2R	16023841	2R_16023841_SNP [dm3] 2R_20136336_SNP [dm6]	G	A	4.314e^-4	0.919	DOWNSTREAM CR44634 INTERGENIC
2R	14698786	2R_14698786_SNP [dm3] 2R_18811281_SNP [dm6]	T	C	4.316e^-4	0.919	INTRON CG15096
3R	11006143	3R_11006143_SNP [dm3] 3R_15180421_SNP [dm6]	T	C	4.323e^-4	0.919	UTR_5_PRIME Mf UPSTREAM Mf INTRON Gyc88E & 1 other
3L	12773144	3L_12773144_SNP [dm3] 3L_12780044_SNP [dm6]	C	T	4.329e^-4	0.919	SYNONYMOUS_CODING CG10969	TF binding site mE1_TFBS_sens
2L	7452670	2L_7452670_DEL [dm3] 2L_7452670_DEL [dm6]	TT	T	4.335e^-4	0.919	INTRON Gr28a	TF binding site mE1_TFBS_HSA
2L	7305132	2L_7305132_SNP [dm3] 2L_7305132_SNP [dm6]	T	C	4.339e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21782310	2L_21782310_SNP [dm3] 2L_21782310_SNP [dm6]	G	T	4.341e^-4	0.919	SYNONYMOUS_CODING CG11630 INTRON CG31612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	19698073	2L_19698073_SNP [dm3] 2L_19698073_SNP [dm6]	C	T	4.360e^-4	0.919	INTRON Lar
2R	18032128	2R_18032128_DEL [dm3] 2R_22144623_DEL [dm6]	TGTAT	T	4.362e^-4	0.919	INTRON a	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	10201439	3R_10201439_DEL [dm3] 3R_14375717_DEL [dm6]	CACCGAC	C	4.363e^-4	0.919	EXON CR44943
X	19009184	X_19009184_SNP [dm3] X_19115151_SNP [dm6]	G	A	4.364e^-4	0.919	INTERGENIC
X	3860164	X_3860164_SNP [dm3] X_3966131_SNP [dm6]	A	G	4.368e^-4	0.919	SYNONYMOUS_CODING CG6428 UPSTREAM lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	8937576	2R_8937576_SNP [dm3] 2R_13050071_SNP [dm6]	T	C	4.377e^-4	0.919	UPSTREAM CG13324 INTERGENIC
2R	15817430	2R_15817430_SNP [dm3] 2R_19929925_SNP [dm6]	T	A	4.386e^-4	0.919	INTERGENIC
3L	11547201	3L_11547201_SNP [dm3] 3L_11554101_SNP [dm6]	T	A	4.387e^-4	0.919	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	19737152	X_19737152_SNP [dm3] X_19843119_SNP [dm6]	A	T	4.401e^-4	0.919	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7120985	3R_7120985_SNP [dm3] 3R_11295263_SNP [dm6]	G	A	4.403e^-4	0.919	INTRON CR31386
2L	15412401	2L_15412401_SNP [dm3] 2L_15412401_SNP [dm6]	C	T	4.407e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	10806375	2L_10806375_SNP [dm3] 2L_10806375_SNP [dm6]	G	C	4.410e^-4	0.919	SYNONYMOUS_CODING Nos UTR_3_PRIME Nos	TF binding site mE1_TFBS_chinmo
3L	6112375	3L_6112375_INS [dm3] 3L_6119275_INS [dm6]	A	TACTCTATATACT...	4.410e^-4	0.919	INTRON Ets65A
2R	14820672	2R_14820672_SNP [dm3] 2R_18933167_SNP [dm6]	A	C	4.417e^-4	0.919	INTRON sano
3R	25798401	3R_25798401_SNP [dm3] 3R_29972679_SNP [dm6]	C	A	4.422e^-4	0.919	INTERGENIC
3R	26169691	3R_26169691_MNP [dm3] 3R_30343969_MNP [dm6]	GTA	CCT	4.423e^-4	0.919	INTRON hdc	TF binding site BDTNP1_TFBS_dl
3R	17717223	3R_17717223_SNP [dm3] 3R_21891501_SNP [dm6]	G	A	4.428e^-4	0.919	INTRON CG6678
2L	8617455	2L_8617455_SNP [dm3] 2L_8617455_SNP [dm6]	C	G	4.440e^-4	0.919	INTRON Sema-1a
2R	11673224	2R_11673224_SNP [dm3] 2R_15785719_SNP [dm6]	C	T	4.451e^-4	0.919	INTRON Zasp52	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	19505536	2R_19505536_SNP [dm3] 2R_23618013_SNP [dm6]	C	T	4.451e^-4	0.919	INTERGENIC
2R	9092957	2R_9092957_SNP [dm3] 2R_13205452_SNP [dm6]	T	C	4.452e^-4	0.919	UPSTREAM lat INTRON lat & 1 other	TF binding site BDTNP1_TFBS_dl
3L	6074777	3L_6074777_SNP [dm3] 3L_6081677_SNP [dm6]	G	C	4.456e^-4	0.919	UTR_3_PRIME CG6619 DOWNSTREAM CG6619
3L	15391612	3L_15391612_SNP [dm3] 3L_15398512_SNP [dm6]	A	G	4.458e^-4	0.919	INTERGENIC
2L	18509487	2L_18509487_SNP [dm3] 2L_18509487_SNP [dm6]	G	A	4.464e^-4	0.919	UPSTREAM CG10178 INTERGENIC
2L	20848516	2L_20848516_SNP [dm3] 2L_20848516_SNP [dm6]	A	G	4.471e^-4	0.919	UPSTREAM CR44307 & 1 other INTRON CG31676
3R	2640705	3R_2640705_SNP [dm3] 3R_6814983_SNP [dm6]	G	T	4.474e^-4	0.919	INTRON CR42651	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	19560710	3R_19560710_SNP [dm3] 3R_23734988_SNP [dm6]	A	G	4.481e^-4	0.919	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4204560	X_4204560_SNP [dm3] X_4310527_SNP [dm6]	T	A	4.487e^-4	0.919	DOWNSTREAM CG15579 INTERGENIC
2L	551692	2L_551692_SNP [dm3] 2L_551692_SNP [dm6]	T	C	4.491e^-4	0.919	NON_SYNONYMOUS_CODING Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8114383	2L_8114383_SNP [dm3] 2L_8114383_SNP [dm6]	C	A	4.493e^-4	0.919	UTR_3_PRIME Bsg
2L	13430646	2L_13430646_SNP [dm3] 2L_13430646_SNP [dm6]	C	T	4.496e^-4	0.919	INTRON CG42784
2R	19506020	2R_19506020_INS [dm3] 2R_23618497_INS [dm6]	T	TCAT	4.503e^-4	0.919	INTERGENIC
2L	17752934	2L_17752934_SNP [dm3] 2L_17752934_SNP [dm6]	G	A	4.512e^-4	0.919	UPSTREAM CadN INTRON CadN	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	14313873	2R_14313873_SNP [dm3] 2R_18426368_SNP [dm6]	A	C	4.514e^-4	0.919	UPSTREAM CG12263 DOWNSTREAM CG5174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11302231	3L_11302231_SNP [dm3] 3L_11309131_SNP [dm6]	G	T	4.520e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
3L	12767672	3L_12767672_SNP [dm3] 3L_12774572_SNP [dm6]	G	T	4.524e^-4	0.919	NON_SYNONYMOUS_CODING CG32106 UPSTREAM Hip1	TF binding site mE1_TFBS_sens
2R	13106313	2R_13106313_SNP [dm3] 2R_17218808_SNP [dm6]	A	G	4.526e^-4	0.919	INTRON mbl
3R	26707355	3R_26707355_SNP [dm3] 3R_30881633_SNP [dm6]	A	T	4.530e^-4	0.919	UPSTREAM CG12071 DOWNSTREAM CG15547 INTERGENIC
2R	16047960	2R_16047960_SNP [dm3] 2R_20160455_SNP [dm6]	G	C	4.531e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26009128	3R_26009128_SNP [dm3] 3R_30183406_SNP [dm6]	T	C	4.549e^-4	0.919	DOWNSTREAM CR44262 INTERGENIC
2L	18821495	2L_18821495_SNP [dm3] 2L_18821495_SNP [dm6]	A	C	4.552e^-4	0.919	INTRON CG17324
2L	18821496	2L_18821496_SNP [dm3] 2L_18821496_SNP [dm6]	T	A	4.552e^-4	0.919	INTRON CG17324
X	17303174	X_17303174_SNP [dm3] X_17409141_SNP [dm6]	C	T	4.564e^-4	0.919	INTERGENIC
3R	16944096	3R_16944096_SNP [dm3] 3R_21118374_SNP [dm6]	A	G	4.565e^-4	0.919	SYNONYMOUS_CODING Bdbt DOWNSTREAM ppan & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17770728	2L_17770728_SNP [dm3] 2L_17770728_SNP [dm6]	A	C	4.580e^-4	0.919	INTRON CadN
3L	11199406	3L_11199406_SNP [dm3] 3L_11206306_SNP [dm6]	T	C	4.592e^-4	0.919	UPSTREAM Plod DOWNSTREAM Ube3a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8219826	3L_8219826_SNP [dm3] 3L_8226726_SNP [dm6]	A	T	4.592e^-4	0.919	INTERGENIC
2L	8347780	2L_8347780_SNP [dm3] 2L_8347780_SNP [dm6]	G	T	4.594e^-4	0.919	INTRON CG7778
2R	18363092	2R_18363092_SNP [dm3] 2R_22475587_SNP [dm6]	C	G	4.596e^-4	0.919	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG45063
2L	18752866	2L_18752866_SNP [dm3] 2L_18752866_SNP [dm6]	A	G	4.600e^-4	0.919	INTERGENIC
2L	17752935	2L_17752935_SNP [dm3] 2L_17752935_SNP [dm6]	A	T	4.601e^-4	0.919	UPSTREAM CadN INTRON CadN	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	16943609	3R_16943609_SNP [dm3] 3R_21117887_SNP [dm6]	A	G	4.607e^-4	0.919	UTR_3_PRIME ppan & 1 other	TF binding site mE1_TFBS_cad
2R	8548863	2R_8548863_SNP [dm3] 2R_12661358_SNP [dm6]	T	A	4.608e^-4	0.919	UTR_5_PRIME nemy INTRON nemy
2L	13360885	2L_13360885_SNP [dm3] 2L_13360885_SNP [dm6]	T	C	4.611e^-4	0.919	INTRON CG9377
2R	9115362	2R_9115362_SNP [dm3] 2R_13227857_SNP [dm6]	G	T	4.612e^-4	0.919	UTR_3_PRIME Dp DOWNSTREAM Pex13 & 1 other
3R	23205799	3R_23205799_SNP [dm3] 3R_27380077_SNP [dm6]	C	T	4.613e^-4	0.919	UTR_3_PRIME side INTRON side
3L	18149067	3L_18149067_SNP [dm3] 3L_18155967_SNP [dm6]	G	C	4.616e^-4	0.919	SYNONYMOUS_CODING CG13699
2L	21785971	2L_21785971_SNP [dm3] 2L_21785971_SNP [dm6]	A	G	4.630e^-4	0.919	INTRON CG31612
2L	7911074	2L_7911074_SNP [dm3] 2L_7911074_SNP [dm6]	T	G	4.641e^-4	0.919	INTRON Snoo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16229895	X_16229895_SNP [dm3] X_16335862_SNP [dm6]	T	C	4.661e^-4	0.919	UPSTREAM Dsp1 INTRON Dsp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D
2R	12552437	2R_12552437_SNP [dm3] 2R_16664932_SNP [dm6]	G	A	4.663e^-4	0.919	UPSTREAM Picot INTRON Picot
3L	11549924	3L_11549924_SNP [dm3] 3L_11556824_SNP [dm6]	A	T	4.666e^-4	0.919	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	22136847	2L_22136847_SNP [dm3] 2L_22136847_SNP [dm6]	C	G	4.669e^-4	0.919	INTRON CG42748
2L	17345829	2L_17345829_SNP [dm3] 2L_17345829_SNP [dm6]	G	A	4.671e^-4	0.919	INTERGENIC
2L	18240078	2L_18240078_SNP [dm3] 2L_18240078_SNP [dm6]	A	C	4.676e^-4	0.919	INTRON CG42750
3R	17920035	3R_17920035_SNP [dm3] 3R_22094313_SNP [dm6]	A	G	4.687e^-4	0.919	INTRON CG5778
X	9852049	X_9852049_SNP [dm3] X_9958016_SNP [dm6]	G	A	4.687e^-4	0.919	INTERGENIC
3L	9482081	3L_9482081_SNP [dm3] 3L_9488981_SNP [dm6]	T	A	4.695e^-4	0.919	DOWNSTREAM CG32037 INTRON CG32036
2L	7453449	2L_7453449_SNP [dm3] 2L_7453449_SNP [dm6]	A	T	4.695e^-4	0.919	INTRON Gr28a
3L	9140046	3L_9140046_SNP [dm3] 3L_9146946_SNP [dm6]	T	C	4.695e^-4	0.919	UTR_3_PRIME Rdl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3R	20317482	3R_20317482_SNP [dm3] 3R_24491760_SNP [dm6]	A	T	4.701e^-4	0.919	DOWNSTREAM nAChRalpha2 INTERGENIC
2L	15005115	2L_15005115_SNP [dm3] 2L_15005115_SNP [dm6]	G	A	4.704e^-4	0.919	UPSTREAM dyn-p25 INTERGENIC
2L	21785894	2L_21785894_SNP [dm3] 2L_21785894_SNP [dm6]	G	C	4.707e^-4	0.919	INTRON CG31612
2R	13802517	2R_13802517_SNP [dm3] 2R_17915012_SNP [dm6]	G	T	4.712e^-4	0.919	INTRON Elk
3L	22646258	3L_22646258_SNP [dm3] 3L_22653158_SNP [dm6]	C	T	4.716e^-4	0.919	UPSTREAM CG33772 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
X	16496910	X_16496910_SNP [dm3] X_16602877_SNP [dm6]	A	C	4.724e^-4	0.919	NON_SYNONYMOUS_CODING Nup153	TF binding site mE1_TFBS_sens
3R	25179231	3R_25179231_DEL [dm3] 3R_29353509_DEL [dm6]	TA	T	4.731e^-4	0.919	INTERGENIC
X	3361491	X_3361491_SNP [dm3] X_3467458_SNP [dm6]	C	T	4.736e^-4	0.919	INTRON CR44999 & 1 other
2L	17345834	2L_17345834_SNP [dm3] 2L_17345834_SNP [dm6]	A	T	4.738e^-4	0.919	INTERGENIC
2R	6435281	2R_6435281_SNP [dm3] 2R_10547776_SNP [dm6]	T	G	4.738e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1156477	2L_1156477_SNP [dm3] 2L_1156477_SNP [dm6]	C	A	4.739e^-4	0.919	UPSTREAM capt INTRON capt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Trl
3L	1977791	3L_1977791_SNP [dm3] 3L_1977791_SNP [dm6]	T	A	4.742e^-4	0.919	INTERGENIC
X	9502518	X_9502518_SNP [dm3] X_9608485_SNP [dm6]	T	C	4.745e^-4	0.919	NON_SYNONYMOUS_CODING Aats-lys UPSTREAM CG42797 INTRON Aats-lys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	6074813	3L_6074813_SNP [dm3] 3L_6081713_SNP [dm6]	C	G	4.746e^-4	0.919	UTR_3_PRIME CG6619 DOWNSTREAM CG6619
3R	23382902	3R_23382902_SNP [dm3] 3R_27557180_SNP [dm6]	C	A	4.749e^-4	0.919	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
2L	1576888	2L_1576888_SNP [dm3] 2L_1576888_SNP [dm6]	T	G	4.749e^-4	0.919	INTRON haf
X	6080748	X_6080748_SNP [dm3] X_6186715_SNP [dm6]	A	C	4.751e^-4	0.919	INTRON Ca-alpha1T
2R	12063095	2R_12063095_SNP [dm3] 2R_16175590_SNP [dm6]	T	C	4.756e^-4	0.919	NON_SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
2R	16383049	2R_16383049_SNP [dm3] 2R_20495544_SNP [dm6]	G	A	4.761e^-4	0.919	INTERGENIC
3L	18132194	3L_18132194_SNP [dm3] 3L_18139094_SNP [dm6]	G	T	4.764e^-4	0.919	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	11551455	X_11551455_SNP [dm3] X_11657422_SNP [dm6]	C	T	4.774e^-4	0.919	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18240100	2L_18240100_SNP [dm3] 2L_18240100_SNP [dm6]	T	C	4.775e^-4	0.919	INTRON CG42750
2L	20994017	2L_20994017_SNP [dm3] 2L_20994017_SNP [dm6]	C	T	4.777e^-4	0.919	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
X	20724628	X_20724628_SNP [dm3] X_20853601_SNP [dm6]	A	G	4.790e^-4	0.919	INTRON shakB
3R	16732884	3R_16732884_SNP [dm3] 3R_20907162_SNP [dm6]	T	C	4.792e^-4	0.919	SYNONYMOUS_CODING CG5621 INTRON CG5621	TF binding site mE1_TFBS_cad
2L	566822	2L_566822_SNP [dm3] 2L_566822_SNP [dm6]	A	G	4.795e^-4	0.919	SYNONYMOUS_CODING Nle DOWNSTREAM CG2794	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11005898	2L_11005898_SNP [dm3] 2L_11005898_SNP [dm6]	T	A	4.800e^-4	0.919	INTRON Nup154	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6041320	2L_6041320_SNP [dm3] 2L_6041320_SNP [dm6]	A	T	4.800e^-4	0.919	NON_SYNONYMOUS_CODING ade2 DOWNSTREAM CG31643
2L	1956640	2L_1956640_SNP [dm3] 2L_1956640_SNP [dm6]	A	G	4.802e^-4	0.919	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	22153901	2L_22153901_SNP [dm3] 2L_22153901_SNP [dm6]	T	C	4.803e^-4	0.919	INTRON CG42748	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	6645637	X_6645637_SNP [dm3] X_6751604_SNP [dm6]	C	A	4.803e^-4	0.919	INTRON CG14439
2L	17770717	2L_17770717_SNP [dm3] 2L_17770717_SNP [dm6]	T	A	4.804e^-4	0.919	INTRON CadN
2R	17583166	2R_17583166_SNP [dm3] 2R_21695661_SNP [dm6]	G	T	4.806e^-4	0.919	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad
2R	7496310	2R_7496310_SNP [dm3] 2R_11608805_SNP [dm6]	T	A	4.813e^-4	0.919	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5526524	2L_5526524_SNP [dm3] 2L_5526524_SNP [dm6]	G	C	4.819e^-4	0.919	SYNONYMOUS_CODING Cap-D3 UPSTREAM CG31648 DOWNSTREAM CG6907 EXON CR44793	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	11012627	3R_11012627_DEL [dm3] 3R_15186905_DEL [dm6]	GAA	G	4.828e^-4	0.919	INTRON Gyc88E
3L	9006424	3L_9006424_SNP [dm3] 3L_9013324_SNP [dm6]	A	T	4.830e^-4	0.919	NON_SYNONYMOUS_CODING Doc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	20722651	X_20722651_SNP [dm3] X_20851624_SNP [dm6]	G	C	4.832e^-4	0.919	INTRON shakB
2L	380513	2L_380513_SNP [dm3] 2L_380513_SNP [dm6]	C	T	4.832e^-4	0.919	INTRON al	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	5528482	2L_5528482_SNP [dm3] 2L_5528482_SNP [dm6]	A	G	4.836e^-4	0.919	DOWNSTREAM CG31648 INTRON Cap-D3 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5528489	2L_5528489_SNP [dm3] 2L_5528489_SNP [dm6]	A	G	4.836e^-4	0.919	DOWNSTREAM CG31648 INTRON Cap-D3 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5258375	2L_5258375_SNP [dm3] 2L_5258375_SNP [dm6]	A	C	4.842e^-4	0.919	UPSTREAM CR44744 INTRON tkv
2L	13464982	2L_13464982_SNP [dm3] 2L_13464982_SNP [dm6]	A	G	4.844e^-4	0.919	INTRON CG42784
2L	4867035	2L_4867035_DEL [dm3] 2L_4867035_DEL [dm6]	GTCG	G	4.844e^-4	0.919	INTRON pog
2R	6435261	2R_6435261_DEL [dm3] 2R_10547756_DEL [dm6]	TT	T	4.850e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17587788	3L_17587788_SNP [dm3] 3L_17594688_SNP [dm6]	G	A	4.856e^-4	0.919	INTRON Eip74EF
3L	13980494	3L_13980494_SNP [dm3] 3L_13987394_SNP [dm6]	G	T	4.863e^-4	0.919	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
2R	12831493	2R_12831493_SNP [dm3] 2R_16943988_SNP [dm6]	G	A	4.871e^-4	0.919	UTR_3_PRIME Pkc53E DOWNSTREAM Pkc53E
3L	16556338	3L_16556338_SNP [dm3] 3L_16563238_SNP [dm6]	T	A	4.878e^-4	0.919	DOWNSTREAM Mipp1 INTERGENIC	TF binding site mE1_TFBS_bab1
X	19071017	X_19071017_SNP [dm3] X_19176984_SNP [dm6]	C	T	4.879e^-4	0.919	UTR_3_PRIME CG7556 DOWNSTREAM CG7556
3L	7951386	3L_7951386_SNP [dm3] 3L_7958286_SNP [dm6]	C	T	4.880e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18255076	2L_18255076_SNP [dm3] 2L_18255076_SNP [dm6]	C	T	4.885e^-4	0.919	INTRON CG42750	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2707410	3R_2707410_SNP [dm3] 3R_6881688_SNP [dm6]	A	C	4.887e^-4	0.919	INTRON CR44931	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_eve mE1_TFBS_HSA
2R	6846023	2R_6846023_SNP [dm3] 2R_10958518_SNP [dm6]	C	T	4.888e^-4	0.919	INTERGENIC
2L	14432633	2L_14432633_SNP [dm3] 2L_14432633_SNP [dm6]	A	G	4.899e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21576747	3R_21576747_SNP [dm3] 3R_25751025_SNP [dm6]	T	C	4.902e^-4	0.919	INTRON LpR1
3L	9140047	3L_9140047_SNP [dm3] 3L_9146947_SNP [dm6]	T	A	4.911e^-4	0.919	UTR_3_PRIME Rdl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
2L	21786132	2L_21786132_SNP [dm3] 2L_21786132_SNP [dm6]	A	C	4.911e^-4	0.919	INTRON CG31612
3L	13386852	3L_13386852_SNP [dm3] 3L_13393752_SNP [dm6]	A	T	4.915e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	24993746	3R_24993746_SNP [dm3] 3R_29168024_SNP [dm6]	T	C	4.917e^-4	0.919	SYNONYMOUS_CODING CG11898	TF binding site mE1_TFBS_chinmo
3L	9482019	3L_9482019_SNP [dm3] 3L_9488919_SNP [dm6]	G	C	4.938e^-4	0.919	DOWNSTREAM CG32037 INTRON CG32036
3L	18867789	3L_18867789_SNP [dm3] 3L_18874689_SNP [dm6]	T	C	4.940e^-4	0.919	SYNONYMOUS_CODING Ugt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21280854	X_21280854_SNP [dm3] X_21409827_SNP [dm6]	T	C	4.943e^-4	0.919	EXON CR45003
2L	16391391	2L_16391391_INS [dm3] 2L_16391391_INS [dm6]	C	CAGTC	4.945e^-4	0.919	INTERGENIC
3R	21852952	3R_21852952_SNP [dm3] 3R_26027230_SNP [dm6]	C	G	4.946e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10408770	3R_10408770_SNP [dm3] 3R_14583048_SNP [dm6]	C	T	4.956e^-4	0.919	SPLICE_SITE_REGION stumps INTRON stumps
3R	1922779	3R_1922779_SNP [dm3] 3R_6097057_SNP [dm6]	T	A	4.967e^-4	0.919	INTRON Gasp
3R	14842731	3R_14842731_SNP [dm3] 3R_19017009_SNP [dm6]	C	A	4.971e^-4	0.919	SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
2L	12338469	2L_12338469_SNP [dm3] 2L_12338469_SNP [dm6]	A	G	4.978e^-4	0.919	UPSTREAM CG31862 INTERGENIC
X	10448951	X_10448951_SNP [dm3] X_10554918_SNP [dm6]	C	T	4.980e^-4	0.919	INTRON spri
2L	18508274	2L_18508274_SNP [dm3] 2L_18508274_SNP [dm6]	G	T	4.981e^-4	0.919	INTERGENIC
3L	1092546	3L_1092546_SNP [dm3] 3L_1092546_SNP [dm6]	C	G	4.981e^-4	0.919	INTRON bab1	regulatory region REDfly_CRMs
2L	7085038	2L_7085038_SNP [dm3] 2L_7085038_SNP [dm6]	G	C	4.982e^-4	0.919	UPSTREAM Pvf2 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	20316381	3R_20316381_SNP [dm3] 3R_24490659_SNP [dm6]	G	A	4.984e^-4	0.919	INTRON nAChRalpha2
2L	18256050	2L_18256050_SNP [dm3] 2L_18256050_SNP [dm6]	T	C	4.986e^-4	0.919	UPSTREAM CR43408 INTRON CG42750	TF binding site mE1_TFBS_HSA
2R	12262010	2R_12262010_SNP [dm3] 2R_16374505_SNP [dm6]	G	T	4.986e^-4	0.919	INTERGENIC
2R	7609033	2R_7609033_SNP [dm3] 2R_11721528_SNP [dm6]	A	G	4.988e^-4	0.919	INTRON pyr
3R	16943703	3R_16943703_SNP [dm3] 3R_21117981_SNP [dm6]	A	G	4.989e^-4	0.919	SYNONYMOUS_CODING Bdbt DOWNSTREAM ppan	TF binding site mE1_TFBS_cad
2R	8384366	2R_8384366_SNP [dm3] 2R_12496861_SNP [dm6]	G	C	4.991e^-4	0.919	INTRON fdl & 1 other	TF binding site mE1_TFBS_inv
2L	9078462	2L_9078462_INS [dm3] 2L_9078462_INS [dm6]	A	AA	4.999e^-4	0.919	DOWNSTREAM CG12439 INTERGENIC
3R	20970805	3R_20970805_SNP [dm3] 3R_25145083_SNP [dm6]	A	G	5.002e^-4	0.919	INTERGENIC
2L	10109352	2L_10109352_SNP [dm3] 2L_10109352_SNP [dm6]	A	T	5.002e^-4	0.919	INTRON CG44153 & 1 other
2L	18821803	2L_18821803_SNP [dm3] 2L_18821803_SNP [dm6]	T	A	5.005e^-4	0.919	SYNONYMOUS_CODING CG17324
3L	14894011	3L_14894011_SNP [dm3] 3L_14900911_SNP [dm6]	T	C	5.005e^-4	0.919	INTERGENIC
X	3240016	X_3240016_SNP [dm3] X_3345983_SNP [dm6]	A	G	5.006e^-4	0.919	INTRON CR44886	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	10975589	2L_10975589_SNP [dm3] 2L_10975589_SNP [dm6]	C	T	5.013e^-4	0.919	UTR_3_PRIME l_2_06225 UPSTREAM abo DOWNSTREAM l_2_06225	TF binding site BDTNP1_TFBS_dl
2R	14696605	2R_14696605_SNP [dm3] 2R_18809100_SNP [dm6]	A	C	5.026e^-4	0.919	SYNONYMOUS_CODING CG15096	TF binding site mE1_TFBS_chinmo
3L	11961019	3L_11961019_SNP [dm3] 3L_11967919_SNP [dm6]	C	A	5.029e^-4	0.919	NON_SYNONYMOUS_CODING Muc68E
3L	13671642	3L_13671642_SNP [dm3] 3L_13678542_SNP [dm6]	A	T	5.029e^-4	0.919	INTRON bru-3
2L	18438828	2L_18438828_SNP [dm3] 2L_18438828_SNP [dm6]	A	C	5.034e^-4	0.919	INTERGENIC
3L	9484144	3L_9484144_SNP [dm3] 3L_9491044_SNP [dm6]	A	G	5.039e^-4	0.919	INTRON CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	15686440	2R_15686440_SNP [dm3] 2R_19798935_SNP [dm6]	T	A	5.044e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6101299	3L_6101299_SNP [dm3] 3L_6108199_SNP [dm6]	G	T	5.048e^-4	0.919	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	18127562	3L_18127562_SNP [dm3] 3L_18134462_SNP [dm6]	C	T	5.050e^-4	0.919	INTERGENIC
2R	16373281	2R_16373281_INS [dm3] 2R_20485776_INS [dm6]	G	GG	5.052e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13386920	3L_13386920_SNP [dm3] 3L_13393820_SNP [dm6]	T	C	5.054e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	9383901	3R_9383901_SNP [dm3] 3R_13558179_SNP [dm6]	A	G	5.057e^-4	0.919	INTERGENIC
X	8372695	X_8372695_SNP [dm3] X_8478662_SNP [dm6]	T	A	5.058e^-4	0.919	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223	regulatory region REDfly_CRMs
2L	9012974	2L_9012974_SNP [dm3] 2L_9012974_SNP [dm6]	G	A	5.072e^-4	0.919	UTR_3_PRIME CG13102 & 1 other DOWNSTREAM CG13102	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	11961498	3L_11961498_SNP [dm3] 3L_11968398_SNP [dm6]	C	A	5.074e^-4	0.919	NON_SYNONYMOUS_CODING Muc68E	TF binding site mE1_TFBS_sens
2L	13529806	2L_13529806_SNP [dm3] 2L_13529806_SNP [dm6]	A	C	5.076e^-4	0.919	UTR_3_PRIME CG33641 UPSTREAM CG33642 INTRON B4
3L	15474939	3L_15474939_SNP [dm3] 3L_15481839_SNP [dm6]	T	C	5.097e^-4	0.919	INTERGENIC

By genomic position
Variant impact
Gene name

posteriorLength phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results