DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.153e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.03624
In_2L_t	0.05683
In_3R_P	0.04460

Kruskal-Wallis test

Covariate	χ²	p-value
wolba	5.9024	0.0151
In_2L_t	8.876	0.0118
In_3R_P	7.5843	0.0225

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3530 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	18594107	2R_18594107_SNP [dm3] 2R_22706602_SNP [dm6]	T	C	7.852e^-8	0.11	UPSTREAM Obp58d DOWNSTREAM Obp58b INTRON Obp58c	TF binding site mE1_TFBS_inv
3R	25624104	3R_25624104_SNP [dm3] 3R_29798382_SNP [dm6]	A	G	1.176e^-7	0.11	SYNONYMOUS_CODING CG7837	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	1976285	3R_1976285_INS [dm3] 3R_6150563_INS [dm6]	T	TGGGACT	3.826e^-7	0.239	UTR_3_PRIME CG31559
2R	16614246	2R_16614246_SNP [dm3] 2R_20726741_SNP [dm6]	T	G	6.268e^-7	0.24	INTRON dpr
3R	24099073	3R_24099073_SNP [dm3] 3R_28273351_SNP [dm6]	A	G	6.411e^-7	0.24	INTERGENIC
3L	12157902	3L_12157902_SNP [dm3] 3L_12164802_SNP [dm6]	T	A	8.895e^-7	0.278	UTR_3_PRIME Rh7
2R	6141475	2R_6141475_SNP [dm3] 2R_10253970_SNP [dm6]	G	A	1.097e^-6	0.294	SYNONYMOUS_CODING CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	3800755	3L_3800755_SNP [dm3] 3L_3800755_SNP [dm6]	T	C	1.439e^-6	0.3	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site mE1_TFBS_cad
3R	7869981	3R_7869981_SNP [dm3] 3R_12044259_SNP [dm6]	T	C	1.440e^-6	0.3	DOWNSTREAM CG14736 INTERGENIC
3L	3800564	3L_3800564_SNP [dm3] 3L_3800564_SNP [dm6]	A	G	1.838e^-6	0.329	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6571967	3L_6571967_SNP [dm3] 3L_6578867_SNP [dm6]	T	A	1.929e^-6	0.329	INTRON CG18769 & 1 other
3R	12616309	3R_12616309_SNP [dm3] 3R_16790587_SNP [dm6]	G	A	2.148e^-6	0.336	DOWNSTREAM Glut3 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4585691	3R_4585691_SNP [dm3] 3R_8759969_SNP [dm6]	C	T	2.591e^-6	0.343	INTRON CG11768 & 1 other
3R	7864531	3R_7864531_SNP [dm3] 3R_12038809_SNP [dm6]	A	T	2.653e^-6	0.343	INTERGENIC
3R	14689182	3R_14689182_SNP [dm3] 3R_18863460_SNP [dm6]	A	G	2.744e^-6	0.343	INTERGENIC
3R	7875049	3R_7875049_SNP [dm3] 3R_12049327_SNP [dm6]	A	T	3.774e^-6	0.373	UPSTREAM CG14739 INTERGENIC
3L	10048571	3L_10048571_SNP [dm3] 3L_10055471_SNP [dm6]	A	G	4.057e^-6	0.373	INTRON dpr6
2R	17432382	2R_17432382_DEL [dm3] 2R_21544877_DEL [dm6]	GTTCTAAG	G	4.257e^-6	0.373	INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7864479	3R_7864479_SNP [dm3] 3R_12038757_SNP [dm6]	G	A	4.892e^-6	0.373	INTERGENIC
3R	4588298	3R_4588298_SNP [dm3] 3R_8762576_SNP [dm6]	G	T	5.044e^-6	0.373	INTRON CG11768 & 1 other
2R	19452755	2R_19452755_SNP [dm3] 2R_23565232_SNP [dm6]	T	A	5.079e^-6	0.373	DOWNSTREAM CG30184 INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	1977798	3R_1977798_SNP [dm3] 3R_6152076_SNP [dm6]	T	C	5.365e^-6	0.373	INTRON CG31559
3R	4587212	3R_4587212_SNP [dm3] 3R_8761490_SNP [dm6]	G	A	5.383e^-6	0.373	INTRON CG11768 & 1 other
3R	7864521	3R_7864521_SNP [dm3] 3R_12038799_SNP [dm6]	C	G	5.634e^-6	0.373	INTERGENIC
2R	17579695	2R_17579695_SNP [dm3] 2R_21692190_SNP [dm6]	G	A	5.763e^-6	0.373	DOWNSTREAM CngB INTRON Ppcdc & 1 other	TF binding site mE1_TFBS_cad
3R	24103455	3R_24103455_SNP [dm3] 3R_28277733_SNP [dm6]	T	C	5.778e^-6	0.373	INTERGENIC
3R	25030065	3R_25030065_SNP [dm3] 3R_29204343_SNP [dm6]	C	T	5.837e^-6	0.373	UPSTREAM CG14508 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	1830797	3R_1830797_SNP [dm3] 3R_6005075_SNP [dm6]	G	A	6.088e^-6	0.373	SYNONYMOUS_CODING Rm62
3R	7061924	3R_7061924_SNP [dm3] 3R_11236202_SNP [dm6]	T	A	6.194e^-6	0.373	UPSTREAM CG31441 DOWNSTREAM CG17721 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	7864690	3R_7864690_DEL [dm3] 3R_12038968_DEL [dm6]	CCCCAAAAACCGACC...	C	6.361e^-6	0.373	INTERGENIC
2R	15859013	2R_15859013_SNP [dm3] 2R_19971508_SNP [dm6]	C	T	6.549e^-6	0.373	INTERGENIC
3R	13913739	3R_13913739_SNP [dm3] 3R_18088017_SNP [dm6]	T	C	7.047e^-6	0.373	INTERGENIC
3L	9011625	3L_9011625_SNP [dm3] 3L_9018525_SNP [dm6]	A	G	7.134e^-6	0.373	INTRON Doc2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	1025357	2L_1025357_SNP [dm3] 2L_1025357_SNP [dm6]	C	T	7.730e^-6	0.373	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo
3R	17930630	3R_17930630_SNP [dm3] 3R_22104908_SNP [dm6]	T	C	8.172e^-6	0.373	NON_SYNONYMOUS_CODING CG13407 INTRON CG5778
X	8372637	X_8372637_SNP [dm3] X_8478604_SNP [dm6]	G	A	8.232e^-6	0.373	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223	regulatory region REDfly_CRMs
2R	16155689	2R_16155689_SNP [dm3] 2R_20268184_SNP [dm6]	C	T	8.926e^-6	0.373	SYNONYMOUS_CODING CG8908	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20108068	2R_20108068_SNP [dm3] 2R_24220545_SNP [dm6]	C	G	9.062e^-6	0.373	INTRON CG30419
3R	3277742	3R_3277742_SNP [dm3] 3R_7452020_SNP [dm6]	T	A	9.085e^-6	0.373	UPSTREAM tRNA:V3b:84Da DOWNSTREAM tRNA:V3b:84Db & 1 other INTERGENIC
3R	4603905	3R_4603905_SNP [dm3] 3R_8778183_SNP [dm6]	A	G	9.132e^-6	0.373	DOWNSTREAM CG33191 INTRON Pif1B & 1 other
2L	936735	2L_936735_SNP [dm3] 2L_936735_SNP [dm6]	A	G	9.145e^-6	0.373	INTRON CG4341
3R	7864459	3R_7864459_DEL [dm3] 3R_12038737_DEL [dm6]	CAGCCCCACC	C	9.203e^-6	0.373	INTERGENIC
2R	19452742	2R_19452742_SNP [dm3] 2R_23565219_SNP [dm6]	T	G	9.359e^-6	0.373	DOWNSTREAM CG30184 INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8372671	X_8372671_SNP [dm3] X_8478638_SNP [dm6]	T	C	1.008e^-5	0.373	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223	regulatory region REDfly_CRMs
3R	24234813	3R_24234813_SNP [dm3] 3R_28409091_SNP [dm6]	C	G	1.022e^-5	0.373	INTERGENIC
2R	931248	2R_931248_SNP [dm3] 2R_5043743_SNP [dm6]	G	T	1.031e^-5	0.373	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24103479	3R_24103479_SNP [dm3] 3R_28277757_SNP [dm6]	T	C	1.054e^-5	0.373	INTERGENIC
3R	7870284	3R_7870284_SNP [dm3] 3R_12044562_SNP [dm6]	C	A	1.059e^-5	0.373	INTERGENIC
3R	19908685	3R_19908685_SNP [dm3] 3R_24082963_SNP [dm6]	A	C	1.160e^-5	0.373	INTRON 4EHP
3L	5132760	3L_5132760_SNP [dm3] 3L_5139660_SNP [dm6]	C	T	1.171e^-5	0.373	UTR_5_PRIME CHMP2B UPSTREAM Prpk DOWNSTREAM CG4611 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	4587935	3R_4587935_SNP [dm3] 3R_8762213_SNP [dm6]	C	A	1.171e^-5	0.373	INTRON CG11768 & 1 other
3L	3802875	3L_3802875_SNP [dm3] 3L_3802875_SNP [dm6]	C	G	1.174e^-5	0.373	DOWNSTREAM ntc INTRON CG32264
3L	5132495	3L_5132495_SNP [dm3] 3L_5139395_SNP [dm6]	A	C	1.178e^-5	0.373	UTR_5_PRIME Prpk UPSTREAM CHMP2B DOWNSTREAM CG4611	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	9011594	3L_9011594_SNP [dm3] 3L_9018494_SNP [dm6]	G	A	1.188e^-5	0.373	INTRON Doc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	15859032	2R_15859032_SNP [dm3] 2R_19971527_SNP [dm6]	G	T	1.267e^-5	0.373	INTERGENIC
3R	4573431	3R_4573431_SNP [dm3] 3R_8747709_SNP [dm6]	G	A	1.270e^-5	0.373	UPSTREAM CG8223 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	4570763	3R_4570763_SNP [dm3] 3R_8745041_SNP [dm6]	G	A	1.274e^-5	0.373	INTRON CG9801
X	8372626	X_8372626_SNP [dm3] X_8478593_SNP [dm6]	A	G	1.282e^-5	0.373	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223	regulatory region REDfly_CRMs
3L	3802889	3L_3802889_SNP [dm3] 3L_3802889_SNP [dm6]	G	A	1.311e^-5	0.373	DOWNSTREAM ntc INTRON CG32264
X	8372545	X_8372545_INS [dm3] X_8478512_INS [dm6]	A	AAGCTTCAAA	1.345e^-5	0.373	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223	regulatory region REDfly_CRMs
3R	7873175	3R_7873175_SNP [dm3] 3R_12047453_SNP [dm6]	T	C	1.348e^-5	0.373	DOWNSTREAM CG14739 INTERGENIC
3L	7013663	3L_7013663_SNP [dm3] 3L_7020563_SNP [dm6]	A	T	1.351e^-5	0.373	INTRON Mp
3R	17184439	3R_17184439_SNP [dm3] 3R_21358717_SNP [dm6]	C	T	1.358e^-5	0.373	UTR_5_PRIME pre-mod_mdg4_-I & 3 others UTR_3_PRIME pre-mod_mdg4_-K & 1 other INTRON mod_mdg4_ & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12044951	3R_12044951_SNP [dm3] 3R_16219229_SNP [dm6]	A	T	1.437e^-5	0.373	INTERGENIC
3R	15277412	3R_15277412_SNP [dm3] 3R_19451690_SNP [dm6]	A	G	1.444e^-5	0.373	INTRON CG31221
2L	2660905	2L_2660905_SNP [dm3] 2L_2660905_SNP [dm6]	T	G	1.458e^-5	0.373	INTERGENIC
3L	5132481	3L_5132481_SNP [dm3] 3L_5139381_SNP [dm6]	T	C	1.495e^-5	0.373	UTR_5_PRIME Prpk UPSTREAM CHMP2B DOWNSTREAM CG4611	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	19407914	2R_19407914_SNP [dm3] 2R_23520391_SNP [dm6]	G	A	1.568e^-5	0.373	SYNONYMOUS_CODING RabX1
3R	7871772	3R_7871772_DEL [dm3] 3R_12046050_DEL [dm6]	GTGGAACTCCT...	G	1.638e^-5	0.373	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4589049	3R_4589049_SNP [dm3] 3R_8763327_SNP [dm6]	T	G	1.686e^-5	0.373	INTRON CG11768 & 1 other
3R	7869980	3R_7869980_SNP [dm3] 3R_12044258_SNP [dm6]	G	A	1.711e^-5	0.373	DOWNSTREAM CG14736 INTERGENIC
3R	7864931	3R_7864931_SNP [dm3] 3R_12039209_SNP [dm6]	C	G	1.725e^-5	0.373	INTERGENIC
X	13864391	X_13864391_SNP [dm3] X_13970358_SNP [dm6]	C	T	1.797e^-5	0.373	INTRON mamo
3R	16755540	3R_16755540_SNP [dm3] 3R_20929818_SNP [dm6]	G	A	1.807e^-5	0.373	DOWNSTREAM hdly INTRON CG31191
3L	5132755	3L_5132755_SNP [dm3] 3L_5139655_SNP [dm6]	C	T	1.814e^-5	0.373	START_GAINED CHMP2B UTR_5_PRIME CHMP2B UPSTREAM Prpk DOWNSTREAM CG4611 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	19300763	3R_19300763_SNP [dm3] 3R_23475041_SNP [dm6]	G	A	1.857e^-5	0.373	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	733482	3R_733482_SNP [dm3] 3R_4907760_SNP [dm6]	G	A	1.887e^-5	0.373	SYNONYMOUS_CODING Gnf1
3L	5132557	3L_5132557_INS [dm3] 3L_5139457_INS [dm6]	T	TAT	1.927e^-5	0.373	UPSTREAM CHMP2B & 1 other DOWNSTREAM CG4611 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	5883774	3L_5883774_SNP [dm3] 3L_5890674_SNP [dm6]	C	A	1.964e^-5	0.373	INTERGENIC
3R	6113572	3R_6113572_SNP [dm3] 3R_10287850_SNP [dm6]	A	C	1.993e^-5	0.373	INTRON CG43143
3R	1189028	3R_1189028_SNP [dm3] 3R_5363306_SNP [dm6]	C	A	1.994e^-5	0.373	INTRON Cerk
3L	5132527	3L_5132527_SNP [dm3] 3L_5139427_SNP [dm6]	A	G	2.017e^-5	0.373	UPSTREAM CHMP2B & 1 other DOWNSTREAM CG4611 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	22905163	3R_22905163_SNP [dm3] 3R_27079441_SNP [dm6]	C	T	2.033e^-5	0.373	INTRON CG14257	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6678865	2R_6678865_SNP [dm3] 2R_10791360_SNP [dm6]	A	C	2.040e^-5	0.373	UPSTREAM mthl13 INTRON CG33144
3L	5883845	3L_5883845_SNP [dm3] 3L_5890745_SNP [dm6]	G	C	2.046e^-5	0.373	INTERGENIC
3R	13930771	3R_13930771_SNP [dm3] 3R_18105049_SNP [dm6]	T	A	2.083e^-5	0.373	INTRON sr
3R	12044869	3R_12044869_SNP [dm3] 3R_16219147_SNP [dm6]	G	A	2.110e^-5	0.373	INTERGENIC
3L	7121510	3L_7121510_SNP [dm3] 3L_7128410_SNP [dm6]	G	C	2.150e^-5	0.373	UPSTREAM CG15829 & 1 other DOWNSTREAM BBS1 INTERGENIC
3L	5132545	3L_5132545_SNP [dm3] 3L_5139445_SNP [dm6]	G	A	2.174e^-5	0.373	UPSTREAM CHMP2B & 1 other DOWNSTREAM CG4611 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	1683374	3L_1683374_SNP [dm3] 3L_1683374_SNP [dm6]	G	C	2.182e^-5	0.373	INTRON CG7991
3R	7870534	3R_7870534_SNP [dm3] 3R_12044812_SNP [dm6]	C	A	2.201e^-5	0.373	INTERGENIC
3R	6116239	3R_6116239_SNP [dm3] 3R_10290517_SNP [dm6]	A	C	2.227e^-5	0.373	UPSTREAM CG43143 INTRON CG43143
3L	3907783	3L_3907783_DEL [dm3] 3L_3907783_DEL [dm6]	TT	T	2.267e^-5	0.373	UTR_3_PRIME ida DOWNSTREAM mge
3L	4631088	3L_4631088_SNP [dm3] 3L_4631088_SNP [dm6]	C	T	2.273e^-5	0.373	INTRON axo
3R	26720384	3R_26720384_SNP [dm3] 3R_30894662_SNP [dm6]	C	T	2.313e^-5	0.373	INTRON Cyp4c3	TF binding site mE1_TFBS_HSA
2R	6141545	2R_6141545_SNP [dm3] 2R_10254040_SNP [dm6]	C	T	2.315e^-5	0.373	INTRON CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	15207504	2L_15207504_SNP [dm3] 2L_15207504_SNP [dm6]	C	G	2.359e^-5	0.373	UPSTREAM CR44196 INTERGENIC
3R	12044890	3R_12044890_SNP [dm3] 3R_16219168_SNP [dm6]	A	G	2.370e^-5	0.373	INTERGENIC
2R	17579888	2R_17579888_SNP [dm3] 2R_21692383_SNP [dm6]	G	A	2.379e^-5	0.373	DOWNSTREAM CngB INTRON Ppcdc & 1 other	TF binding site mE1_TFBS_cad
3R	7870917	3R_7870917_SNP [dm3] 3R_12045195_SNP [dm6]	C	A	2.385e^-5	0.373	INTERGENIC
3R	1830545	3R_1830545_SNP [dm3] 3R_6004823_SNP [dm6]	A	G	2.388e^-5	0.373	SYNONYMOUS_CODING Rm62	TF binding site mE1_TFBS_chinmo
2R	17580575	2R_17580575_SNP [dm3] 2R_21693070_SNP [dm6]	C	T	2.393e^-5	0.373	SYNONYMOUS_CODING CngB DOWNSTREAM Ppcdc & 1 other	TF binding site mE1_TFBS_cad
3R	571385	3R_571385_SNP [dm3] 3R_4745663_SNP [dm6]	T	C	2.409e^-5	0.373	INTRON tacc
3R	24913488	3R_24913488_DEL [dm3] 3R_29087766_DEL [dm6]	CT	C	2.463e^-5	0.373	UPSTREAM CG11873 INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8372521	X_8372521_SNP [dm3] X_8478488_SNP [dm6]	C	T	2.470e^-5	0.373	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223	regulatory region REDfly_CRMs
2L	5718621	2L_5718621_SNP [dm3] 2L_5718621_SNP [dm6]	T	G	2.478e^-5	0.373	NON_SYNONYMOUS_CODING CG11149 DOWNSTREAM CG34011 INTRON CG11149
3R	4574839	3R_4574839_SNP [dm3] 3R_8749117_SNP [dm6]	C	G	2.498e^-5	0.373	DOWNSTREAM CG34135 & 1 other INTRON CG8223	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5718617	2L_5718617_SNP [dm3] 2L_5718617_SNP [dm6]	G	T	2.540e^-5	0.373	STOP_GAINED CG11149 DOWNSTREAM CG34011 INTRON CG11149
3R	20889395	3R_20889395_SNP [dm3] 3R_25063673_SNP [dm6]	C	T	2.559e^-5	0.373	DOWNSTREAM veli INTRON Unc-13-4B
2L	7457953	2L_7457953_SNP [dm3] 2L_7457953_SNP [dm6]	T	C	2.563e^-5	0.373	UPSTREAM Gr28b INTRON Gr28b
3L	5132550	3L_5132550_SNP [dm3] 3L_5139450_SNP [dm6]	T	C	2.577e^-5	0.373	UPSTREAM CHMP2B & 1 other DOWNSTREAM CG4611 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	4598164	3R_4598164_SNP [dm3] 3R_8772442_SNP [dm6]	G	T	2.582e^-5	0.373	SYNONYMOUS_CODING CG13318 UPSTREAM CG34301	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2670548	3R_2670548_SNP [dm3] 3R_6844826_SNP [dm6]	C	G	2.603e^-5	0.373	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19142908	2R_19142908_SNP [dm3] 2R_23255385_SNP [dm6]	G	C	2.627e^-5	0.373	INTERGENIC
3R	4567233	3R_4567233_SNP [dm3] 3R_8741511_SNP [dm6]	T	A	2.634e^-5	0.373	INTRON CG9801
3L	3907818	3L_3907818_SNP [dm3] 3L_3907818_SNP [dm6]	A	C	2.667e^-5	0.373	DOWNSTREAM mge & 1 other INTERGENIC
3R	1642052	3R_1642052_SNP [dm3] 3R_5816330_SNP [dm6]	T	G	2.682e^-5	0.373	UPSTREAM CG42675 INTRON CG42675
3L	10985542	3L_10985542_SNP [dm3] 3L_10992442_SNP [dm6]	G	A	2.701e^-5	0.373	INTRON klu
2L	11454232	2L_11454232_SNP [dm3] 2L_11454232_SNP [dm6]	G	A	2.709e^-5	0.373	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	7106956	2L_7106956_SNP [dm3] 2L_7106956_SNP [dm6]	C	A	2.728e^-5	0.373	INTRON Pvf3
2R	6141373	2R_6141373_SNP [dm3] 2R_10253868_SNP [dm6]	C	T	2.757e^-5	0.373	SYNONYMOUS_CODING CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	6391106	3R_6391106_SNP [dm3] 3R_10565384_SNP [dm6]	G	A	2.798e^-5	0.373	INTRON hth
3R	4603492	3R_4603492_SNP [dm3] 3R_8777770_SNP [dm6]	G	A	2.817e^-5	0.373	NON_SYNONYMOUS_CODING Pif1B UTR_3_PRIME Pif1A DOWNSTREAM CG33191	TF binding site mE1_TFBS_HSA
3L	5132697	3L_5132697_SNP [dm3] 3L_5139597_SNP [dm6]	A	C	2.820e^-5	0.373	UPSTREAM CHMP2B & 1 other DOWNSTREAM CG4611 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4583757	3R_4583757_SNP [dm3] 3R_8758035_SNP [dm6]	C	A	2.848e^-5	0.373	INTRON CG11768 & 1 other
2L	1463996	2L_1463996_SNP [dm3] 2L_1463996_SNP [dm6]	T	C	2.853e^-5	0.373	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	25627563	3R_25627563_SNP [dm3] 3R_29801841_SNP [dm6]	G	A	2.885e^-5	0.373	UTR_3_PRIME CG7834 DOWNSTREAM Ice	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8372641	X_8372641_SNP [dm3] X_8478608_SNP [dm6]	C	T	2.904e^-5	0.373	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223	regulatory region REDfly_CRMs
3R	4574510	3R_4574510_SNP [dm3] 3R_8748788_SNP [dm6]	T	C	2.915e^-5	0.373	DOWNSTREAM CG34135 & 1 other INTRON CG8223	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1139886	2L_1139886_SNP [dm3] 2L_1139886_SNP [dm6]	A	G	2.955e^-5	0.373	NON_SYNONYMOUS_CODING CG4577	TF binding site mE1_TFBS_cad
3L	11041819	3L_11041819_SNP [dm3] 3L_11048719_SNP [dm6]	T	A	2.961e^-5	0.373	INTRON CG43693
3R	500218	3R_500218_SNP [dm3] 3R_4674496_SNP [dm6]	A	G	2.963e^-5	0.373	INTRON CG43427 EXON CR44157
3R	1951941	3R_1951941_SNP [dm3] 3R_6126219_SNP [dm6]	A	T	2.976e^-5	0.373	DOWNSTREAM CR43486 INTERGENIC
3R	4574037	3R_4574037_SNP [dm3] 3R_8748315_SNP [dm6]	A	C	2.990e^-5	0.373	UPSTREAM CG9801 DOWNSTREAM CG34135 & 1 other INTRON CG8223	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1965209	3R_1965209_DEL [dm3] 3R_6139487_DEL [dm6]	GT	G	3.032e^-5	0.373	INTERGENIC
2R	16139234	2R_16139234_INS [dm3] 2R_20251729_INS [dm6]	T	TACCACAT	3.037e^-5	0.373	INTRON CG9864
3R	12044910	3R_12044910_SNP [dm3] 3R_16219188_SNP [dm6]	C	A	3.054e^-5	0.373	INTERGENIC
3R	23002212	3R_23002212_SNP [dm3] 3R_27176490_SNP [dm6]	C	T	3.061e^-5	0.373	SYNONYMOUS_CODING Ser	TF binding site mE1_TFBS_chinmo
3R	23751216	3R_23751216_SNP [dm3] 3R_27925494_SNP [dm6]	A	G	3.078e^-5	0.373	UTR_5_PRIME mino UPSTREAM mino & 1 other DOWNSTREAM RpL4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	7864946	3R_7864946_SNP [dm3] 3R_12039224_SNP [dm6]	C	G	3.084e^-5	0.373	INTERGENIC
3L	3718360	3L_3718360_SNP [dm3] 3L_3718360_SNP [dm6]	T	C	3.084e^-5	0.373	SYNONYMOUS_CODING CG32264
3L	3800557	3L_3800557_SNP [dm3] 3L_3800557_SNP [dm6]	G	C	3.101e^-5	0.373	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19451976	2R_19451976_SNP [dm3] 2R_23564453_SNP [dm6]	T	C	3.118e^-5	0.373	SYNONYMOUS_CODING CG30184 UPSTREAM apt DOWNSTREAM Pi3K59F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24556930	3R_24556930_SNP [dm3] 3R_28731208_SNP [dm6]	T	C	3.146e^-5	0.373	INTRON htt
3R	4589249	3R_4589249_SNP [dm3] 3R_8763527_SNP [dm6]	T	G	3.201e^-5	0.373	INTRON CG11768 & 1 other
2R	16147373	2R_16147373_SNP [dm3] 2R_20259868_SNP [dm6]	T	C	3.213e^-5	0.373	NON_SYNONYMOUS_CODING Hsl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17586157	2R_17586157_SNP [dm3] 2R_21698652_SNP [dm6]	G	T	3.231e^-5	0.373	INTRON HmgZ
3R	25624269	3R_25624269_SNP [dm3] 3R_29798547_SNP [dm6]	C	T	3.265e^-5	0.373	SYNONYMOUS_CODING CG7837	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8994348	2L_8994348_SNP [dm3] 2L_8994348_SNP [dm6]	G	C	3.271e^-5	0.373	UTR_3_PRIME alien UPSTREAM CG17906 DOWNSTREAM CG9555 & 1 other	TF binding site mE1_TFBS_sens
2R	13799424	2R_13799424_SNP [dm3] 2R_17911919_SNP [dm6]	A	T	3.295e^-5	0.373	INTRON Elk
2R	8918572	2R_8918572_SNP [dm3] 2R_13031067_SNP [dm6]	G	T	3.296e^-5	0.373	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18849271	X_18849271_SNP [dm3] X_18955238_SNP [dm6]	A	G	3.297e^-5	0.373	INTRON CG43759
3R	4574966	3R_4574966_SNP [dm3] 3R_8749244_SNP [dm6]	T	A	3.304e^-5	0.373	UTR_3_PRIME CG34135 & 1 other INTRON CG8223	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20419887	X_20419887_SNP [dm3] X_20548860_SNP [dm6]	C	T	3.317e^-5	0.373	INTRON RunxB
2L	13951062	2L_13951062_SNP [dm3] 2L_13951062_SNP [dm6]	A	G	3.351e^-5	0.373	INTRON Ance-3
3L	958535	3L_958535_SNP [dm3] 3L_958535_SNP [dm6]	C	A	3.365e^-5	0.373	INTRON Glut1	TF binding site mE1_TFBS_Trl
3L	5132551	3L_5132551_SNP [dm3] 3L_5139451_SNP [dm6]	T	A	3.379e^-5	0.373	UPSTREAM CHMP2B & 1 other DOWNSTREAM CG4611 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	8372721	X_8372721_SNP [dm3] X_8478688_SNP [dm6]	C	G	3.395e^-5	0.373	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223	regulatory region REDfly_CRMs
3R	4587195	3R_4587195_SNP [dm3] 3R_8761473_SNP [dm6]	A	G	3.423e^-5	0.373	INTRON CG11768 & 1 other
3L	5132696	3L_5132696_SNP [dm3] 3L_5139596_SNP [dm6]	C	A	3.434e^-5	0.373	UPSTREAM CHMP2B & 1 other DOWNSTREAM CG4611 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11469356	2L_11469356_SNP [dm3] 2L_11469356_SNP [dm6]	C	T	3.435e^-5	0.373	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7060859	3R_7060859_SNP [dm3] 3R_11235137_SNP [dm6]	G	A	3.436e^-5	0.373	UPSTREAM CG17721 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17589497	2R_17589497_SNP [dm3] 2R_21701992_SNP [dm6]	C	T	3.484e^-5	0.373	START_GAINED HmgD UTR_5_PRIME HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3L	3907820	3L_3907820_DEL [dm3] 3L_3907820_DEL [dm6]	AGTTT	A	3.486e^-5	0.373	DOWNSTREAM mge & 1 other INTERGENIC
3L	18984752	3L_18984752_SNP [dm3] 3L_18991652_SNP [dm6]	A	G	3.492e^-5	0.373	SYNONYMOUS_CODING CG18135	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17504998	2R_17504998_SNP [dm3] 2R_21617493_SNP [dm6]	G	A	3.495e^-5	0.373	SYNONYMOUS_CODING clt UPSTREAM CG18870	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	975751	2L_975751_SNP [dm3] 2L_975751_SNP [dm6]	A	G	3.520e^-5	0.373	INTERGENIC	TF binding site BDTNP1_TFBS_hb
X	10356544	X_10356544_INS [dm3] X_10462511_INS [dm6]	T	TT	3.525e^-5	0.373	UTR_3_PRIME nocte DOWNSTREAM Neb-cGP	TF binding site BDTNP1_TFBS_dl
2L	11442926	2L_11442926_SNP [dm3] 2L_11442926_SNP [dm6]	C	G	3.546e^-5	0.373	INTRON salm
X	5506247	X_5506247_INS [dm3] X_5612214_INS [dm6]	A	AAA	3.563e^-5	0.373	UTR_3_PRIME Vsx1	TF binding site mE1_TFBS_cad
3R	25622652	3R_25622652_SNP [dm3] 3R_29796930_SNP [dm6]	C	T	3.573e^-5	0.373	INTRON CG7837	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18478113	2R_18478113_SNP [dm3] 2R_22590608_SNP [dm6]	T	C	3.589e^-5	0.373	INTRON dnr1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	18517835	2R_18517835_SNP [dm3] 2R_22630330_SNP [dm6]	C	T	3.595e^-5	0.373	SYNONYMOUS_CODING CG33143 INTRON CG33143	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	499248	3R_499248_INS [dm3] 3R_4673526_INS [dm6]	A	AGATCTCGAAGGCCAGA...	3.645e^-5	0.373	UPSTREAM CR44157 INTRON CG43427	TF binding site mE1_TFBS_HSA
3R	12044909	3R_12044909_SNP [dm3] 3R_16219187_SNP [dm6]	A	T	3.647e^-5	0.373	INTERGENIC
3R	1779206	3R_1779206_SNP [dm3] 3R_5953484_SNP [dm6]	A	T	3.651e^-5	0.373	INTRON CG34113
2R	5649544	2R_5649544_SNP [dm3] 2R_9762039_SNP [dm6]	T	C	3.696e^-5	0.373	SPLICE_SITE_REGION trpl INTRON trpl	TF binding site mE1_TFBS_cad
3L	1274260	3L_1274260_SNP [dm3] 3L_1274260_SNP [dm6]	C	G	3.745e^-5	0.373	UTR_3_PRIME CG9134	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3R	26154617	3R_26154617_SNP [dm3] 3R_30328895_SNP [dm6]	G	A	3.755e^-5	0.373	INTRON hdc
3R	20889415	3R_20889415_SNP [dm3] 3R_25063693_SNP [dm6]	T	A	3.760e^-5	0.373	DOWNSTREAM veli INTRON Unc-13-4B
3R	4591577	3R_4591577_SNP [dm3] 3R_8765855_SNP [dm6]	T	C	3.763e^-5	0.373	INTRON CG11768 & 1 other
3L	5132680	3L_5132680_SNP [dm3] 3L_5139580_SNP [dm6]	T	G	3.793e^-5	0.373	UPSTREAM CHMP2B & 1 other DOWNSTREAM CG4611 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	4579896	2R_4579896_SNP [dm3] 2R_8692391_SNP [dm6]	C	T	3.795e^-5	0.373	UTR_3_PRIME Jon44E DOWNSTREAM CG8586 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4579910	2R_4579910_SNP [dm3] 2R_8692405_SNP [dm6]	G	T	3.795e^-5	0.373	UTR_3_PRIME Jon44E DOWNSTREAM CG8586 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13686670	2L_13686670_SNP [dm3] 2L_13686670_SNP [dm6]	T	A	3.818e^-5	0.373	INTRON CG31814
3R	9615006	3R_9615006_SNP [dm3] 3R_13789284_SNP [dm6]	A	G	3.868e^-5	0.373	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7966213	3L_7966213_SNP [dm3] 3L_7973113_SNP [dm6]	C	T	3.879e^-5	0.373	NON_SYNONYMOUS_CODING CG8042 DOWNSTREAM RNaseX25	TF binding site mE1_TFBS_chinmo
3R	9602037	3R_9602037_SNP [dm3] 3R_13776315_SNP [dm6]	T	C	3.886e^-5	0.373	SYNONYMOUS_CODING CG9297
3R	5090207	3R_5090207_SNP [dm3] 3R_9264485_SNP [dm6]	C	A	3.925e^-5	0.373	UPSTREAM sage DOWNSTREAM Aats-trp INTERGENIC
2L	15207509	2L_15207509_SNP [dm3] 2L_15207509_SNP [dm6]	T	G	3.967e^-5	0.373	UPSTREAM CR44196 INTERGENIC
X	18849257	X_18849257_SNP [dm3] X_18955224_SNP [dm6]	T	G	3.976e^-5	0.373	INTRON CG43759
2L	2350477	2L_2350477_SNP [dm3] 2L_2350477_SNP [dm6]	G	A	4.019e^-5	0.373	INTRON CG9967 & 1 other
2L	11610980	2L_11610980_SNP [dm3] 2L_11610980_SNP [dm6]	G	A	4.030e^-5	0.373	SYNONYMOUS_CODING spag4 INTRON kek2
2R	5654081	2R_5654081_SNP [dm3] 2R_9766576_SNP [dm6]	C	T	4.049e^-5	0.373	NON_SYNONYMOUS_CODING CG1688 EXON CR44205	TF binding site mE1_TFBS_cad
3R	22779859	3R_22779859_SNP [dm3] 3R_26954137_SNP [dm6]	T	G	4.062e^-5	0.373	UPSTREAM CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_dl
2L	1700357	2L_1700357_MNP [dm3] 2L_1700357_MNP [dm6]	ATA	TGG	4.078e^-5	0.373	UTR_3_PRIME chinmo
3R	6113635	3R_6113635_SNP [dm3] 3R_10287913_SNP [dm6]	G	T	4.101e^-5	0.373	INTRON CG43143
3R	7865776	3R_7865776_SNP [dm3] 3R_12040054_SNP [dm6]	C	G	4.112e^-5	0.373	UPSTREAM CG14736 INTERGENIC
2R	6148689	2R_6148689_SNP [dm3] 2R_10261184_SNP [dm6]	A	T	4.116e^-5	0.373	UTR_3_PRIME CG12911 DOWNSTREAM CR30009
X	22237429	X_22237429_SNP [dm3] X_22835593_SNP [dm6]	G	T	4.138e^-5	0.373	INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	7863833	3R_7863833_SNP [dm3] 3R_12038111_SNP [dm6]	T	G	4.158e^-5	0.373	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5132522	3L_5132522_SNP [dm3] 3L_5139422_SNP [dm6]	T	C	4.163e^-5	0.373	UPSTREAM CHMP2B & 1 other DOWNSTREAM CG4611 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	13686665	2L_13686665_SNP [dm3] 2L_13686665_SNP [dm6]	A	T	4.176e^-5	0.373	INTRON CG31814
3R	4587088	3R_4587088_SNP [dm3] 3R_8761366_SNP [dm6]	G	A	4.185e^-5	0.373	INTRON CG11768 & 1 other
2L	7925577	2L_7925577_SNP [dm3] 2L_7925577_SNP [dm6]	A	G	4.209e^-5	0.373	INTRON Snoo
2R	18517838	2R_18517838_SNP [dm3] 2R_22630333_SNP [dm6]	C	T	4.211e^-5	0.373	SYNONYMOUS_CODING CG33143 INTRON CG33143	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5120061	X_5120061_SNP [dm3] X_5226028_SNP [dm6]	C	T	4.238e^-5	0.373	INTRON CG15465 & 1 other
2R	17512862	2R_17512862_SNP [dm3] 2R_21625357_SNP [dm6]	C	A	4.294e^-5	0.373	SYNONYMOUS_CODING mahj UPSTREAM PTP-ER	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	17512892	2R_17512892_SNP [dm3] 2R_21625387_SNP [dm6]	A	G	4.294e^-5	0.373	SYNONYMOUS_CODING mahj UPSTREAM PTP-ER	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	1057470	2L_1057470_MNP [dm3] 2L_1057470_MNP [dm6]	GTAGT	TATTG	4.294e^-5	0.373	INTRON S	TF binding site mE1_TFBS_sens
2R	17579957	2R_17579957_SNP [dm3] 2R_21692452_SNP [dm6]	C	T	4.301e^-5	0.373	SYNONYMOUS_CODING Ppcdc UTR_3_PRIME CG42496 DOWNSTREAM CngB	TF binding site mE1_TFBS_cad
3R	14809728	3R_14809728_SNP [dm3] 3R_18984006_SNP [dm6]	G	T	4.317e^-5	0.373	UPSTREAM gukh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	14736925	3R_14736925_SNP [dm3] 3R_18911203_SNP [dm6]	A	G	4.322e^-5	0.373	UTR_3_PRIME CG14291 DOWNSTREAM EndoA	TF binding site mE1_TFBS_cad
3R	4557671	3R_4557671_SNP [dm3] 3R_8731949_SNP [dm6]	C	T	4.331e^-5	0.373	UPSTREAM CG8202 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19302704	2R_19302704_SNP [dm3] 2R_23415181_SNP [dm6]	A	G	4.352e^-5	0.373	UPSTREAM CG30411 INTRON CG9812
3R	7061727	3R_7061727_SNP [dm3] 3R_11236005_SNP [dm6]	C	T	4.361e^-5	0.373	UTR_3_PRIME CG17721 UPSTREAM Arfip & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	14809731	3R_14809731_SNP [dm3] 3R_18984009_SNP [dm6]	A	T	4.392e^-5	0.373	UPSTREAM gukh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2R	17513352	2R_17513352_SNP [dm3] 2R_21625847_SNP [dm6]	C	G	4.398e^-5	0.373	INTRON mahj	TF binding site mE1_TFBS_sens
2L	2348616	2L_2348616_SNP [dm3] 2L_2348616_SNP [dm6]	C	T	4.411e^-5	0.373	INTRON CG9967 & 1 other
3R	13913797	3R_13913797_SNP [dm3] 3R_18088075_SNP [dm6]	T	C	4.476e^-5	0.373	INTERGENIC
3R	2045263	3R_2045263_SNP [dm3] 3R_6219541_SNP [dm6]	G	T	4.525e^-5	0.373	INTRON Osi4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13854013	2R_13854013_SNP [dm3] 2R_17966508_SNP [dm6]	A	T	4.536e^-5	0.373	INTERGENIC
3R	16755471	3R_16755471_SNP [dm3] 3R_20929749_SNP [dm6]	T	G	4.564e^-5	0.373	DOWNSTREAM hdly INTRON CG31191
X	8372653	X_8372653_INS [dm3] X_8478620_INS [dm6]	AA	TTT	4.567e^-5	0.373	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223	regulatory region REDfly_CRMs
2L	7457945	2L_7457945_SNP [dm3] 2L_7457945_SNP [dm6]	G	A	4.579e^-5	0.373	UPSTREAM Gr28b INTRON Gr28b
3L	5132734	3L_5132734_SNP [dm3] 3L_5139634_SNP [dm6]	A	G	4.608e^-5	0.373	UTR_5_PRIME CHMP2B UPSTREAM Prpk DOWNSTREAM CG4611 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	871720	3L_871720_SNP [dm3] 3L_871720_SNP [dm6]	A	G	4.639e^-5	0.373	UPSTREAM CG32479 DOWNSTREAM CG12502 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_Trl
3R	1993308	3R_1993308_SNP [dm3] 3R_6167586_SNP [dm6]	A	C	4.645e^-5	0.373	SYNONYMOUS_CODING CG1077
3R	14738853	3R_14738853_SNP [dm3] 3R_18913131_SNP [dm6]	A	G	4.685e^-5	0.373	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	13930831	3R_13930831_SNP [dm3] 3R_18105109_SNP [dm6]	T	A	4.692e^-5	0.373	INTRON sr
3R	24866763	3R_24866763_SNP [dm3] 3R_29041041_SNP [dm6]	A	G	4.692e^-5	0.373	INTRON Pkc98E	TF binding site BDTNP1_TFBS_dl
3R	13854079	3R_13854079_SNP [dm3] 3R_18028357_SNP [dm6]	T	C	4.700e^-5	0.373	INTERGENIC
X	13693817	X_13693817_SNP [dm3] X_13799784_SNP [dm6]	C	T	4.712e^-5	0.373	INTRON inaE
2L	2660819	2L_2660819_SNP [dm3] 2L_2660819_SNP [dm6]	A	T	4.713e^-5	0.373	INTERGENIC
2L	2348611	2L_2348611_SNP [dm3] 2L_2348611_SNP [dm6]	C	G	4.731e^-5	0.373	INTRON CG9967 & 1 other
3R	5632812	3R_5632812_SNP [dm3] 3R_9807090_SNP [dm6]	T	C	4.736e^-5	0.373	SYNONYMOUS_CODING FBX011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	2064099	3R_2064099_SNP [dm3] 3R_6238377_SNP [dm6]	C	A	4.743e^-5	0.373	INTERGENIC	transposable element FlyBase
2L	9638566	2L_9638566_SNP [dm3] 2L_9638566_SNP [dm6]	C	T	4.745e^-5	0.373	INTRON Apoltp
2R	17512007	2R_17512007_SNP [dm3] 2R_21624502_SNP [dm6]	A	T	4.767e^-5	0.373	UPSTREAM mahj & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	19332787	3R_19332787_SNP [dm3] 3R_23507065_SNP [dm6]	C	T	4.771e^-5	0.373	SYNONYMOUS_CODING CG34289
3R	5725433	3R_5725433_SNP [dm3] 3R_9899711_SNP [dm6]	G	C	4.812e^-5	0.373	INTRON Glut4EF	TF binding site mE1_TFBS_chinmo
3R	25090975	3R_25090975_SNP [dm3] 3R_29265253_SNP [dm6]	A	G	4.814e^-5	0.373	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18593709	2R_18593709_SNP [dm3] 2R_22706204_SNP [dm6]	A	T	4.842e^-5	0.373	UPSTREAM Obp58d DOWNSTREAM Obp58b INTRON Obp58c	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24234745	3R_24234745_SNP [dm3] 3R_28409023_SNP [dm6]	T	C	4.863e^-5	0.373	INTERGENIC
2R	931113	2R_931113_SNP [dm3] 2R_5043608_SNP [dm6]	A	G	4.873e^-5	0.373	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11611012	2L_11611012_SNP [dm3] 2L_11611012_SNP [dm6]	C	T	4.896e^-5	0.373	NON_SYNONYMOUS_CODING spag4 INTRON kek2
X	8372695	X_8372695_SNP [dm3] X_8478662_SNP [dm6]	T	A	4.919e^-5	0.373	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223	regulatory region REDfly_CRMs
3R	20323461	3R_20323461_SNP [dm3] 3R_24497739_SNP [dm6]	A	G	4.937e^-5	0.373	INTERGENIC
2L	6958617	2L_6958617_SNP [dm3] 2L_6958617_SNP [dm6]	C	A	4.976e^-5	0.374	DOWNSTREAM Atac1 INTRON CG3430
2R	16928909	2R_16928909_SNP [dm3] 2R_21041404_SNP [dm6]	G	A	5.002e^-5	0.374	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7871198	3R_7871198_SNP [dm3] 3R_12045476_SNP [dm6]	A	G	5.010e^-5	0.374	INTERGENIC
3R	3490711	3R_3490711_SNP [dm3] 3R_7664989_SNP [dm6]	C	T	5.087e^-5	0.377	INTRON Nlg1
3L	891499	3L_891499_SNP [dm3] 3L_891499_SNP [dm6]	A	T	5.101e^-5	0.377	DOWNSTREAM snoRNA:CG32479-a INTRON CG32479	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4574730	3R_4574730_SNP [dm3] 3R_8749008_SNP [dm6]	G	A	5.104e^-5	0.377	DOWNSTREAM CG34135 & 1 other INTRON CG8223	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21575329	3R_21575329_SNP [dm3] 3R_25749607_SNP [dm6]	A	T	5.192e^-5	0.382	INTRON LpR1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14198993	2R_14198993_SNP [dm3] 2R_18311488_SNP [dm6]	G	A	5.220e^-5	0.382	UPSTREAM Tango8 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4585799	3R_4585799_SNP [dm3] 3R_8760077_SNP [dm6]	G	A	5.285e^-5	0.385	INTRON CG11768 & 1 other
3L	3800848	3L_3800848_SNP [dm3] 3L_3800848_SNP [dm6]	A	T	5.311e^-5	0.385	UTR_5_PRIME CG32264 INTRON CG32264
3L	16349980	3L_16349980_SNP [dm3] 3L_16356880_SNP [dm6]	C	T	5.314e^-5	0.385	UPSTREAM CG45057 INTRON CG45057
2L	11610961	2L_11610961_SNP [dm3] 2L_11610961_SNP [dm6]	C	G	5.335e^-5	0.385	INTRON kek2 & 1 other
3R	9616089	3R_9616089_SNP [dm3] 3R_13790367_SNP [dm6]	G	A	5.385e^-5	0.387	INTERGENIC	TF binding site mE1_TFBS_cad
3R	415358	3R_415358_SNP [dm3] 3R_4589636_SNP [dm6]	A	G	5.424e^-5	0.387	UPSTREAM CR45558 INTERGENIC	transposable element FlyBase
3R	4666463	3R_4666463_DEL [dm3] 3R_8840741_DEL [dm6]	GA	G	5.463e^-5	0.387	INTRON pyd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18849258	X_18849258_SNP [dm3] X_18955225_SNP [dm6]	A	C	5.499e^-5	0.387	INTRON CG43759
2R	931263	2R_931263_SNP [dm3] 2R_5043758_SNP [dm6]	G	T	5.512e^-5	0.387	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13510943	2R_13510943_SNP [dm3] 2R_17623438_SNP [dm6]	T	C	5.513e^-5	0.387	INTRON CG10936
3L	15000173	3L_15000173_SNP [dm3] 3L_15007073_SNP [dm6]	C	T	5.559e^-5	0.387	INTRON Reck
3L	958528	3L_958528_SNP [dm3] 3L_958528_SNP [dm6]	G	T	5.571e^-5	0.387	INTRON Glut1	TF binding site mE1_TFBS_Trl
2L	2660830	2L_2660830_SNP [dm3] 2L_2660830_SNP [dm6]	C	G	5.582e^-5	0.387	INTERGENIC
3R	5632818	3R_5632818_SNP [dm3] 3R_9807096_SNP [dm6]	A	G	5.583e^-5	0.387	SYNONYMOUS_CODING FBX011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	4601361	3R_4601361_SNP [dm3] 3R_8775639_SNP [dm6]	C	T	5.596e^-5	0.387	SYNONYMOUS_CODING Pif1B UTR_3_PRIME Pif1A
2L	1211981	2L_1211981_SNP [dm3] 2L_1211981_SNP [dm6]	G	T	5.655e^-5	0.39	INTERGENIC
2L	10166553	2L_10166553_SNP [dm3] 2L_10166553_SNP [dm6]	G	T	5.748e^-5	0.391	INTRON CG44153
2R	18857285	2R_18857285_SNP [dm3] 2R_22969762_SNP [dm6]	A	G	5.750e^-5	0.391	INTERGENIC
3R	5090552	3R_5090552_SNP [dm3] 3R_9264830_SNP [dm6]	T	G	5.755e^-5	0.391	UPSTREAM sage DOWNSTREAM Aats-trp INTERGENIC	TF binding site mE1_TFBS_cad
3L	13360917	3L_13360917_DEL [dm3] 3L_13367817_DEL [dm6]	CC	C	5.777e^-5	0.391	INTERGENIC
3R	16997152	3R_16997152_SNP [dm3] 3R_21171430_SNP [dm6]	T	C	5.793e^-5	0.391	INTRON SNF4Agamma
X	18849276	X_18849276_DEL [dm3] X_18955243_DEL [dm6]	TAATA	T	5.806e^-5	0.391	INTRON CG43759
3L	958567	3L_958567_SNP [dm3] 3L_958567_SNP [dm6]	A	G	5.830e^-5	0.391	INTRON Glut1	TF binding site mE1_TFBS_Trl
3R	22779526	3R_22779526_SNP [dm3] 3R_26953804_SNP [dm6]	A	G	5.833e^-5	0.391	UPSTREAM CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	4606350	3R_4606350_SNP [dm3] 3R_8780628_SNP [dm6]	C	T	5.859e^-5	0.391	SYNONYMOUS_CODING CG33189 UPSTREAM CG33191 & 1 other DOWNSTREAM Pif1A INTRON Pif1B & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15000178	3L_15000178_SNP [dm3] 3L_15007078_SNP [dm6]	A	C	5.916e^-5	0.393	INTRON Reck
3R	23751566	3R_23751566_SNP [dm3] 3R_27925844_SNP [dm6]	A	G	5.983e^-5	0.395	UTR_5_PRIME mino UPSTREAM CR45566 DOWNSTREAM RpL4	TF binding site BDTNP1_TFBS_dl
3R	7871353	3R_7871353_SNP [dm3] 3R_12045631_SNP [dm6]	T	C	6.004e^-5	0.395	INTERGENIC
2R	19997395	2R_19997395_SNP [dm3] 2R_24109872_SNP [dm6]	A	C	6.005e^-5	0.395	INTRON CG4049
X	13981990	X_13981990_DEL [dm3] X_14087957_DEL [dm6]	TTAAGTTAAGTAAGGCAAAC...	T	6.022e^-5	0.395	INTERGENIC
3R	18602720	3R_18602720_SNP [dm3] 3R_22776998_SNP [dm6]	A	G	6.063e^-5	0.396	DOWNSTREAM Usp12-46 & 1 other INTRON CG7029	TF binding site mE1_TFBS_cad
3R	8620204	3R_8620204_SNP [dm3] 3R_12794482_SNP [dm6]	C	A	6.117e^-5	0.396	INTERGENIC
2R	8433591	2R_8433591_SNP [dm3] 2R_12546086_SNP [dm6]	T	C	6.118e^-5	0.396	SPLICE_SITE_DONOR CG33752 INTRON fra & 1 other
2R	15843500	2R_15843500_SNP [dm3] 2R_19955995_SNP [dm6]	G	A	6.128e^-5	0.396	UPSTREAM CG44623 INTERGENIC
3R	7927962	3R_7927962_SNP [dm3] 3R_12102240_SNP [dm6]	G	A	6.148e^-5	0.396	INTRON dpr17
2L	11452269	2L_11452269_SNP [dm3] 2L_11452269_SNP [dm6]	T	G	6.253e^-5	0.398	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4655453	2L_4655453_SNP [dm3] 2L_4655453_SNP [dm6]	T	C	6.266e^-5	0.398	INTERGENIC
2R	16920481	2R_16920481_SNP [dm3] 2R_21032976_SNP [dm6]	C	T	6.270e^-5	0.398	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4598178	3R_4598178_SNP [dm3] 3R_8772456_SNP [dm6]	A	G	6.295e^-5	0.398	SPLICE_SITE_REGION CG13318 UPSTREAM CG34301 INTRON CG13318	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13991090	2R_13991090_SNP [dm3] 2R_18103585_SNP [dm6]	T	C	6.300e^-5	0.398	SYNONYMOUS_CODING CG5756 INTRON CG5756	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13294568	3L_13294568_SNP [dm3] 3L_13301468_SNP [dm6]	A	G	6.329e^-5	0.398	UPSTREAM SP & 1 other INTERGENIC
3R	4583395	3R_4583395_SNP [dm3] 3R_8757673_SNP [dm6]	G	C	6.344e^-5	0.398	INTRON CG11768 & 1 other
2L	13691638	2L_13691638_SNP [dm3] 2L_13691638_SNP [dm6]	G	T	6.364e^-5	0.398	INTRON CG31814	TF binding site mE1_TFBS_sbb
3R	7131359	3R_7131359_SNP [dm3] 3R_11305637_SNP [dm6]	C	T	6.369e^-5	0.398	UPSTREAM CR31386 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	20189780	2R_20189780_SNP [dm3] 2R_24302257_SNP [dm6]	A	G	6.403e^-5	0.398	INTERGENIC
2R	15236030	2R_15236030_SNP [dm3] 2R_19348525_SNP [dm6]	T	A	6.414e^-5	0.398	INTRON Rgk1
X	10822481	X_10822481_SNP [dm3] X_10928448_SNP [dm6]	C	A	6.422e^-5	0.398	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1082831	2L_1082831_SNP [dm3] 2L_1082831_SNP [dm6]	T	G	6.478e^-5	0.398	NON_SYNONYMOUS_CODING Atg4a DOWNSTREAM CG4629	TF binding site mE1_TFBS_inv
2R	19033122	2R_19033122_SNP [dm3] 2R_23145599_SNP [dm6]	C	G	6.502e^-5	0.398	INTERGENIC
X	8372552	X_8372552_INS [dm3] X_8478519_INS [dm6]	T	TT	6.509e^-5	0.398	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223	regulatory region REDfly_CRMs
2R	19132317	2R_19132317_SNP [dm3] 2R_23244794_SNP [dm6]	T	C	6.510e^-5	0.398	INTRON yip3
3R	1961700	3R_1961700_SNP [dm3] 3R_6135978_SNP [dm6]	A	T	6.561e^-5	0.4	INTERGENIC
3R	1954097	3R_1954097_SNP [dm3] 3R_6128375_SNP [dm6]	T	A	6.632e^-5	0.401	UPSTREAM CR43487 INTERGENIC
3R	8621034	3R_8621034_SNP [dm3] 3R_12795312_SNP [dm6]	C	T	6.633e^-5	0.401	INTERGENIC
2R	6141540	2R_6141540_SNP [dm3] 2R_10254035_SNP [dm6]	G	T	6.643e^-5	0.401	INTRON CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	1639644	2L_1639644_SNP [dm3] 2L_1639644_SNP [dm6]	A	G	6.693e^-5	0.401	INTERGENIC
2R	4095832	2R_4095832_SNP [dm3] 2R_8208327_SNP [dm6]	T	A	6.711e^-5	0.401	INTRON LRP1
2R	5587997	2R_5587997_SNP [dm3] 2R_9700492_SNP [dm6]	T	G	6.717e^-5	0.401	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16697044	3L_16697044_SNP [dm3] 3L_16703944_SNP [dm6]	T	G	6.851e^-5	0.405	INTRON Lasp & 1 other
2R	5421537	2R_5421537_SNP [dm3] 2R_9534032_SNP [dm6]	C	A	6.877e^-5	0.405	SYNONYMOUS_CODING brp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22826756	3R_22826756_SNP [dm3] 3R_27001034_SNP [dm6]	G	A	6.908e^-5	0.405	NON_SYNONYMOUS_CODING CG31077 INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25995755	3R_25995755_SNP [dm3] 3R_30170033_SNP [dm6]	G	A	6.915e^-5	0.405	SYNONYMOUS_CODING CG31028	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17511729	2R_17511729_SNP [dm3] 2R_21624224_SNP [dm6]	C	A	6.926e^-5	0.405	NON_SYNONYMOUS_CODING PTP-ER UPSTREAM mahj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7096067	2L_7096067_SNP [dm3] 2L_7096067_SNP [dm6]	G	C	6.931e^-5	0.405	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4659573	3R_4659573_DEL [dm3] 3R_8833851_DEL [dm6]	GATA	G	6.937e^-5	0.405	INTRON pyd	TF binding site mE1_TFBS_cad
3R	8379044	3R_8379044_SNP [dm3] 3R_12553322_SNP [dm6]	T	G	6.960e^-5	0.405	INTRON Octbeta2R	TF binding site BDTNP1_TFBS_sna
2L	1578821	2L_1578821_SNP [dm3] 2L_1578821_SNP [dm6]	C	T	7.091e^-5	0.41	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15336768	2L_15336768_INS [dm3] 2L_15336768_INS [dm6]	T	TGTATGT	7.100e^-5	0.41	DOWNSTREAM esg INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	1588976	3R_1588976_SNP [dm3] 3R_5763254_SNP [dm6]	T	C	7.106e^-5	0.41	INTRON CG2082
2L	13948145	2L_13948145_SNP [dm3] 2L_13948145_SNP [dm6]	A	T	7.147e^-5	0.41	UPSTREAM CG16884 INTRON Ance-3
3L	13073566	3L_13073566_SNP [dm3] 3L_13080466_SNP [dm6]	C	T	7.167e^-5	0.41	DOWNSTREAM CR43652 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	22783637	3R_22783637_SNP [dm3] 3R_26957915_SNP [dm6]	T	C	7.177e^-5	0.41	INTRON CG6330
3R	733328	3R_733328_SNP [dm3] 3R_4907606_SNP [dm6]	A	T	7.204e^-5	0.41	NON_SYNONYMOUS_CODING Gnf1	TF binding site mE1_TFBS_sens
2L	7457954	2L_7457954_SNP [dm3] 2L_7457954_SNP [dm6]	A	G	7.207e^-5	0.41	UPSTREAM Gr28b INTRON Gr28b
3R	4574420	3R_4574420_SNP [dm3] 3R_8748698_SNP [dm6]	G	A	7.389e^-5	0.413	DOWNSTREAM CG34135 & 1 other INTRON CG8223	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4590241	3R_4590241_SNP [dm3] 3R_8764519_SNP [dm6]	A	T	7.392e^-5	0.413	INTRON CG11768 & 1 other
3R	25628447	3R_25628447_SNP [dm3] 3R_29802725_SNP [dm6]	A	T	7.398e^-5	0.413	UPSTREAM CG7789 INTRON CG7834	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	2688501	2L_2688501_SNP [dm3] 2L_2688501_SNP [dm6]	T	C	7.432e^-5	0.413	INTRON CG31690
3R	13055174	3R_13055174_SNP [dm3] 3R_17229452_SNP [dm6]	T	G	7.485e^-5	0.413	INTERGENIC
2L	13691683	2L_13691683_SNP [dm3] 2L_13691683_SNP [dm6]	G	A	7.501e^-5	0.413	INTRON CG31814
2R	14101078	2R_14101078_SNP [dm3] 2R_18213573_SNP [dm6]	T	A	7.506e^-5	0.413	INTERGENIC	TF binding site mE1_TFBS_inv
2L	13692734	2L_13692734_SNP [dm3] 2L_13692734_SNP [dm6]	T	G	7.525e^-5	0.413	INTRON CG31814
3R	10103327	3R_10103327_SNP [dm3] 3R_14277605_SNP [dm6]	A	G	7.564e^-5	0.413	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13940879	3L_13940879_SNP [dm3] 3L_13947779_SNP [dm6]	T	G	7.566e^-5	0.413	INTRON CG32137
3R	16955137	3R_16955137_SNP [dm3] 3R_21129415_SNP [dm6]	G	T	7.588e^-5	0.413	UTR_3_PRIME CG5793 UPSTREAM Ice2 DOWNSTREAM CG5793 INTRON Obp93a
2L	11454220	2L_11454220_SNP [dm3] 2L_11454220_SNP [dm6]	T	G	7.623e^-5	0.413	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	12618874	3R_12618874_SNP [dm3] 3R_16793152_SNP [dm6]	C	A	7.628e^-5	0.413	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24104339	3R_24104339_SNP [dm3] 3R_28278617_SNP [dm6]	T	A	7.651e^-5	0.413	INTERGENIC
3R	20861898	3R_20861898_SNP [dm3] 3R_25036176_SNP [dm6]	G	A	7.663e^-5	0.413	SYNONYMOUS_CODING CG6422 UPSTREAM CG31115	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5132925	3L_5132925_SNP [dm3] 3L_5139825_SNP [dm6]	C	A	7.694e^-5	0.413	SYNONYMOUS_CODING CHMP2B UPSTREAM Prpk DOWNSTREAM CG10672
X	9436860	X_9436860_SNP [dm3] X_9542827_SNP [dm6]	C	T	7.708e^-5	0.413	INTRON CG32700
3L	8017979	3L_8017979_SNP [dm3] 3L_8024879_SNP [dm6]	A	T	7.729e^-5	0.413	INTRON nmo	TF binding site BDTNP1_TFBS_dl
2R	16096745	2R_16096745_SNP [dm3] 2R_20209240_SNP [dm6]	C	A	7.739e^-5	0.413	INTERGENIC
3R	12618893	3R_12618893_SNP [dm3] 3R_16793171_SNP [dm6]	G	A	7.743e^-5	0.413	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18815610	2R_18815610_SNP [dm3] 2R_22928087_SNP [dm6]	A	C	7.756e^-5	0.413	UTR_3_PRIME CG42678 UPSTREAM CG42678 INTRON CG42678	TF binding site mE1_TFBS_cad
2L	2688402	2L_2688402_SNP [dm3] 2L_2688402_SNP [dm6]	T	G	7.813e^-5	0.413	INTRON CG31690
3R	22783662	3R_22783662_SNP [dm3] 3R_26957940_SNP [dm6]	G	A	7.841e^-5	0.413	INTRON CG6330
3R	16997157	3R_16997157_SNP [dm3] 3R_21171435_SNP [dm6]	T	A	7.846e^-5	0.413	INTRON SNF4Agamma
3R	18395308	3R_18395308_SNP [dm3] 3R_22569586_SNP [dm6]	C	T	7.888e^-5	0.413	UPSTREAM CG33110 INTERGENIC
3R	22783752	3R_22783752_SNP [dm3] 3R_26958030_SNP [dm6]	G	C	7.956e^-5	0.413	INTRON CG6330
3R	26281210	3R_26281210_SNP [dm3] 3R_30455488_SNP [dm6]	T	A	7.999e^-5	0.413	DOWNSTREAM CG2224 INTRON aralar1
2L	786969	2L_786969_SNP [dm3] 2L_786969_SNP [dm6]	A	G	8.012e^-5	0.413	SYNONYMOUS_CODING Pkg21D UTR_3_PRIME CG3544 DOWNSTREAM CG3544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1684676	3L_1684676_SNP [dm3] 3L_1684676_SNP [dm6]	A	C	8.023e^-5	0.413	INTRON CG7991
X	5507232	X_5507232_SNP [dm3] X_5613199_SNP [dm6]	G	T	8.057e^-5	0.413	DOWNSTREAM Vsx1 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb
2L	13691360	2L_13691360_SNP [dm3] 2L_13691360_SNP [dm6]	G	T	8.091e^-5	0.413	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23751698	3R_23751698_SNP [dm3] 3R_27925976_SNP [dm6]	T	C	8.102e^-5	0.413	SYNONYMOUS_CODING mino UPSTREAM CR45566	TF binding site BDTNP1_TFBS_dl
3R	10051560	3R_10051560_SNP [dm3] 3R_14225838_SNP [dm6]	A	T	8.149e^-5	0.413	SYNONYMOUS_CODING CG9631	TF binding site mE1_TFBS_cad
2L	15207649	2L_15207649_SNP [dm3] 2L_15207649_SNP [dm6]	T	A	8.153e^-5	0.413	UPSTREAM CR44196 INTERGENIC
3R	25091041	3R_25091041_SNP [dm3] 3R_29265319_SNP [dm6]	C	T	8.155e^-5	0.413	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	6319650	3R_6319650_SNP [dm3] 3R_10493928_SNP [dm6]	A	C	8.169e^-5	0.413	INTERGENIC
3R	13983221	3R_13983221_DEL [dm3] 3R_18157499_DEL [dm6]	ACTGCCA	C	8.174e^-5	0.413	UPSTREAM CR45103 DOWNSTREAM CR45104 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	13983233	3R_13983233_SNP [dm3] 3R_18157511_SNP [dm6]	T	A	8.174e^-5	0.413	UPSTREAM CR45103 DOWNSTREAM CR45104 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	13983241	3R_13983241_DEL [dm3] 3R_18157519_DEL [dm6]	TCC	A	8.174e^-5	0.413	UPSTREAM CR45103 DOWNSTREAM CR45104 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	13983245	3R_13983245_DEL [dm3] 3R_18157523_DEL [dm6]	AAAGGT	A	8.174e^-5	0.413	UPSTREAM CR45103 DOWNSTREAM CR45104 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	13983253	3R_13983253_DEL [dm3] 3R_18157531_DEL [dm6]	TTGA	T	8.174e^-5	0.413	UPSTREAM CR45103 DOWNSTREAM CR45104 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	1274259	3L_1274259_SNP [dm3] 3L_1274259_SNP [dm6]	T	C	8.225e^-5	0.413	UTR_3_PRIME CG9134	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3R	2677351	3R_2677351_SNP [dm3] 3R_6851629_SNP [dm6]	A	T	8.226e^-5	0.413	INTERGENIC	regulatory region REDfly_CRMs
3L	4610014	3L_4610014_SNP [dm3] 3L_4610014_SNP [dm6]	T	C	8.244e^-5	0.413	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1933172	2L_1933172_SNP [dm3] 2L_1933172_SNP [dm6]	C	A	8.273e^-5	0.414	INTRON CG7337
3R	7065200	3R_7065200_SNP [dm3] 3R_11239478_SNP [dm6]	C	T	8.384e^-5	0.414	DOWNSTREAM scpr-B INTRON CG31388	TF binding site BDTNP1_TFBS_twi
X	7470886	X_7470886_SNP [dm3] X_7576853_SNP [dm6]	T	A	8.391e^-5	0.414	DOWNSTREAM CG11369 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Kr
3L	9065341	3L_9065341_DEL [dm3] 3L_9072241_DEL [dm6]	CC	C	8.444e^-5	0.414	UPSTREAM CG4942 INTRON CG4911	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6952337	3R_6952337_SNP [dm3] 3R_11126615_SNP [dm6]	A	T	8.459e^-5	0.414	UTR_3_PRIME Ugt86Dd
3R	19781776	3R_19781776_SNP [dm3] 3R_23956054_SNP [dm6]	C	T	8.478e^-5	0.414	SYNONYMOUS_CODING Aats-glupro UPSTREAM Aats-glupro	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1676126	3L_1676126_SNP [dm3] 3L_1676126_SNP [dm6]	T	C	8.543e^-5	0.414	INTRON CG7991
3L	1684702	3L_1684702_SNP [dm3] 3L_1684702_SNP [dm6]	T	G	8.543e^-5	0.414	INTRON CG7991
X	5507227	X_5507227_SNP [dm3] X_5613194_SNP [dm6]	C	A	8.580e^-5	0.414	DOWNSTREAM Vsx1 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb
3R	1687144	3R_1687144_SNP [dm3] 3R_5861422_SNP [dm6]	A	G	8.582e^-5	0.414	UPSTREAM CG2017 INTRON CG2017
3R	13983239	3R_13983239_SNP [dm3] 3R_18157517_SNP [dm6]	T	A	8.593e^-5	0.414	UPSTREAM CR45103 DOWNSTREAM CR45104 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	16728284	3L_16728284_SNP [dm3] 3L_16735184_SNP [dm6]	C	G	8.606e^-5	0.414	INTRON CG9701
3R	4581899	3R_4581899_SNP [dm3] 3R_8756177_SNP [dm6]	G	A	8.629e^-5	0.414	START_GAINED CG34135 & 1 other UTR_5_PRIME CG34135 & 1 other DOWNSTREAM CR44228
3R	26264487	3R_26264487_SNP [dm3] 3R_30438765_SNP [dm6]	A	G	8.633e^-5	0.414	INTRON CG15537
3R	665326	3R_665326_SNP [dm3] 3R_4839604_SNP [dm6]	A	G	8.637e^-5	0.414	INTERGENIC
3R	5694331	3R_5694331_SNP [dm3] 3R_9868609_SNP [dm6]	T	C	8.706e^-5	0.414	UPSTREAM Teh1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
2L	10468492	2L_10468492_SNP [dm3] 2L_10468492_SNP [dm6]	C	T	8.715e^-5	0.414	INTRON RluA-1
3R	11255719	3R_11255719_SNP [dm3] 3R_15429997_SNP [dm6]	C	G	8.717e^-5	0.414	INTRON CG6118
3R	22782618	3R_22782618_SNP [dm3] 3R_26956896_SNP [dm6]	A	C	8.762e^-5	0.414	INTRON CG6330	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	1998825	3R_1998825_SNP [dm3] 3R_6173103_SNP [dm6]	G	T	8.769e^-5	0.414	UPSTREAM Osi1 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15930725	2L_15930725_SNP [dm3] 2L_15930725_SNP [dm6]	A	G	8.786e^-5	0.414	INTRON beat-Ib
2R	14101038	2R_14101038_SNP [dm3] 2R_18213533_SNP [dm6]	T	C	8.786e^-5	0.414	INTERGENIC	TF binding site mE1_TFBS_inv
X	16038469	X_16038469_INS [dm3] X_16144436_INS [dm6]	C	CGTCTCCGTCTTC...	8.800e^-5	0.414	INTRON disco-r
3L	5132688	3L_5132688_SNP [dm3] 3L_5139588_SNP [dm6]	T	A	8.820e^-5	0.414	UPSTREAM CHMP2B & 1 other DOWNSTREAM CG4611 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	1668909	3R_1668909_SNP [dm3] 3R_5843187_SNP [dm6]	A	T	8.850e^-5	0.414	UPSTREAM CG1213 INTRON CG1213
3R	7060355	3R_7060355_SNP [dm3] 3R_11234633_SNP [dm6]	C	A	8.868e^-5	0.414	NON_SYNONYMOUS_CODING Arfip UPSTREAM CG17721	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	25030053	3R_25030053_SNP [dm3] 3R_29204331_SNP [dm6]	T	A	8.876e^-5	0.414	UPSTREAM CG14508 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22826844	3R_22826844_SNP [dm3] 3R_27001122_SNP [dm6]	A	G	8.908e^-5	0.414	NON_SYNONYMOUS_CODING CG31077 INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11193895	3L_11193895_SNP [dm3] 3L_11200795_SNP [dm6]	C	A	8.916e^-5	0.414	UPSTREAM CG14141 DOWNSTREAM CG7607 INTRON Plod
3R	22568569	3R_22568569_SNP [dm3] 3R_26742847_SNP [dm6]	T	C	8.921e^-5	0.414	INTERGENIC
2L	936728	2L_936728_SNP [dm3] 2L_936728_SNP [dm6]	C	T	8.933e^-5	0.414	INTRON CG4341
3R	1555968	3R_1555968_SNP [dm3] 3R_5730246_SNP [dm6]	T	A	8.998e^-5	0.416	INTERGENIC
3L	4610070	3L_4610070_SNP [dm3] 3L_4610070_SNP [dm6]	A	G	9.050e^-5	0.416	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4018559	2L_4018559_DEL [dm3] 2L_4018559_DEL [dm6]	AT	A	9.056e^-5	0.416	INTERGENIC
2R	16929015	2R_16929015_SNP [dm3] 2R_21041510_SNP [dm6]	T	A	9.074e^-5	0.416	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5587305	2R_5587305_SNP [dm3] 2R_9699800_SNP [dm6]	G	A	9.165e^-5	0.417	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	15206440	2L_15206440_DEL [dm3] 2L_15206440_DEL [dm6]	TAAGTA	G	9.167e^-5	0.417	INTERGENIC
3R	22283741	3R_22283741_SNP [dm3] 3R_26458019_SNP [dm6]	T	C	9.179e^-5	0.417	UPSTREAM CG14238 DOWNSTREAM CG14237 INTERGENIC
3R	27336868	3R_27336868_SNP [dm3] 3R_31511146_SNP [dm6]	A	G	9.198e^-5	0.417	INTERGENIC
2L	2044414	2L_2044414_SNP [dm3] 2L_2044414_SNP [dm6]	T	G	9.245e^-5	0.417	DOWNSTREAM CR45298 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	15000161	3L_15000161_SNP [dm3] 3L_15007061_SNP [dm6]	T	G	9.245e^-5	0.417	INTRON Reck
3L	18890980	3L_18890980_SNP [dm3] 3L_18897880_SNP [dm6]	A	G	9.256e^-5	0.417	UPSTREAM RpL26 INTRON CG3902
3R	6952083	3R_6952083_DEL [dm3] 3R_11126361_DEL [dm6]	CG	C	9.278e^-5	0.417	DOWNSTREAM Ugt86Dd INTERGENIC
3L	8322043	3L_8322043_SNP [dm3] 3L_8328943_SNP [dm6]	T	A	9.312e^-5	0.417	DOWNSTREAM CG34461 INTRON CG34462	TF binding site mE1_TFBS_ttk
2L	4679597	2L_4679597_SNP [dm3] 2L_4679597_SNP [dm6]	A	G	9.345e^-5	0.417	INTERGENIC
3R	9633102	3R_9633102_SNP [dm3] 3R_13807380_SNP [dm6]	G	T	9.359e^-5	0.417	INTERGENIC
2R	5661588	2R_5661588_SNP [dm3] 2R_9774083_SNP [dm6]	G	C	9.371e^-5	0.417	INTRON CG1688
2L	1059372	2L_1059372_SNP [dm3] 2L_1059372_SNP [dm6]	A	G	9.426e^-5	0.417	INTRON S
3R	1634345	3R_1634345_SNP [dm3] 3R_5808623_SNP [dm6]	G	T	9.459e^-5	0.417	UTR_3_PRIME CG11000
3L	6224581	3L_6224581_SNP [dm3] 3L_6231481_SNP [dm6]	A	G	9.467e^-5	0.417	DOWNSTREAM CG13299 & 1 other INTERGENIC
2L	2660816	2L_2660816_SNP [dm3] 2L_2660816_SNP [dm6]	T	A	9.467e^-5	0.417	INTERGENIC
3R	1659174	3R_1659174_SNP [dm3] 3R_5833452_SNP [dm6]	T	A	9.480e^-5	0.417	INTRON CG1208
2L	11459744	2L_11459744_SNP [dm3] 2L_11459744_SNP [dm6]	G	A	9.528e^-5	0.419	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	2162193	2L_2162193_SNP [dm3] 2L_2162193_SNP [dm6]	A	G	9.570e^-5	0.419	UPSTREAM aop INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	8804400	2L_8804400_SNP [dm3] 2L_8804400_SNP [dm6]	G	A	9.583e^-5	0.419	INTERGENIC
2L	4229476	2L_4229476_DEL [dm3] 2L_4229476_DEL [dm6]	AT	A	9.653e^-5	0.421	DOWNSTREAM RpL40 & 1 other INTERGENIC
3R	2064544	3R_2064544_SNP [dm3] 3R_6238822_SNP [dm6]	C	G	9.725e^-5	0.421	INTERGENIC	transposable element FlyBase
3L	4302428	3L_4302428_DEL [dm3] 3L_4302428_DEL [dm6]	ATA	A	9.734e^-5	0.421	INTRON dyl
3L	1685758	3L_1685758_SNP [dm3] 3L_1685758_SNP [dm6]	C	T	9.781e^-5	0.421	INTRON CG7991
X	10044747	X_10044747_SNP [dm3] X_10150714_SNP [dm6]	T	C	9.804e^-5	0.421	INTRON CR44894
3R	10843110	3R_10843110_SNP [dm3] 3R_15017388_SNP [dm6]	T	C	9.804e^-5	0.421	INTERGENIC
3L	958553	3L_958553_SNP [dm3] 3L_958553_SNP [dm6]	A	G	9.809e^-5	0.421	INTRON Glut1	TF binding site mE1_TFBS_Trl
3R	7870301	3R_7870301_SNP [dm3] 3R_12044579_SNP [dm6]	C	T	9.813e^-5	0.421	INTERGENIC
2R	14104508	2R_14104508_SNP [dm3] 2R_18217003_SNP [dm6]	T	C	9.824e^-5	0.421	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	525823	3R_525823_SNP [dm3] 3R_4700101_SNP [dm6]	T	C	9.864e^-5	0.421	INTRON CG43427
3R	22779413	3R_22779413_SNP [dm3] 3R_26953691_SNP [dm6]	A	C	9.889e^-5	0.421	UPSTREAM CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	13352891	3L_13352891_SNP [dm3] 3L_13359791_SNP [dm6]	C	A	9.902e^-5	0.421	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1786494	2L_1786494_SNP [dm3] 2L_1786494_SNP [dm6]	C	G	9.927e^-5	0.421	INTERGENIC
2R	5587300	2R_5587300_SNP [dm3] 2R_9699795_SNP [dm6]	G	T	9.962e^-5	0.421	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	16350098	3L_16350098_SNP [dm3] 3L_16356998_SNP [dm6]	C	A	9.969e^-5	0.421	UPSTREAM CG45057 INTRON CG45057
2R	17156523	2R_17156523_SNP [dm3] 2R_21269018_SNP [dm6]	A	T	9.994e^-5	0.421	INTRON Rgk3
3R	7866349	3R_7866349_SNP [dm3] 3R_12040627_SNP [dm6]	A	T	1.000e^-4	0.421	NON_SYNONYMOUS_CODING CG14736 UTR_5_PRIME CG14736
2R	16139750	2R_16139750_SNP [dm3] 2R_20252245_SNP [dm6]	A	G	1.004e^-4	0.421	INTRON CG9864
2L	6381477	2L_6381477_SNP [dm3] 2L_6381477_SNP [dm6]	C	A	1.007e^-4	0.422	SYNONYMOUS_CODING CG9507 INTRON CG42368	TF binding site mE1_TFBS_chinmo
3R	7131556	3R_7131556_SNP [dm3] 3R_11305834_SNP [dm6]	A	G	1.010e^-4	0.422	UPSTREAM CR31386 INTERGENIC
2L	5718637	2L_5718637_SNP [dm3] 2L_5718637_SNP [dm6]	G	A	1.013e^-4	0.422	STOP_GAINED CG11149 DOWNSTREAM CG34011 INTRON CG11149
2R	19305221	2R_19305221_SNP [dm3] 2R_23417698_SNP [dm6]	T	C	1.020e^-4	0.422	DOWNSTREAM CG30411 INTRON CG9812
3R	6955679	3R_6955679_SNP [dm3] 3R_11129957_SNP [dm6]	T	A	1.023e^-4	0.422	INTERGENIC
2R	17579926	2R_17579926_INS [dm3] 2R_21692421_INS [dm6]	T	TG	1.023e^-4	0.422	DOWNSTREAM CngB INTRON Ppcdc & 1 other	TF binding site mE1_TFBS_cad
3R	12613877	3R_12613877_SNP [dm3] 3R_16788155_SNP [dm6]	C	T	1.025e^-4	0.422	UPSTREAM Glut3 INTERGENIC
3R	25624756	3R_25624756_SNP [dm3] 3R_29799034_SNP [dm6]	C	T	1.027e^-4	0.422	UPSTREAM Ice INTRON CG7837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	8443645	2R_8443645_SNP [dm3] 2R_12556140_SNP [dm6]	A	G	1.029e^-4	0.422	INTRON fra
3L	6764833	3L_6764833_INS [dm3] 3L_6771733_INS [dm6]	A	AA	1.029e^-4	0.422	INTERGENIC
3R	10434139	3R_10434139_SNP [dm3] 3R_14608417_SNP [dm6]	A	T	1.033e^-4	0.423	DOWNSTREAM stumps INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	10395627	X_10395627_SNP [dm3] X_10501594_SNP [dm6]	A	G	1.035e^-4	0.423	INTRON spri
3R	20511535	3R_20511535_SNP [dm3] 3R_24685813_SNP [dm6]	A	T	1.042e^-4	0.425	INTRON slo
2L	22049483	2L_22049483_SNP [dm3] 2L_22049483_SNP [dm6]	C	G	1.044e^-4	0.425	INTERGENIC	transposable element FlyBase
3L	7804079	3L_7804079_SNP [dm3] 3L_7810979_SNP [dm6]	A	G	1.046e^-4	0.425	DOWNSTREAM Pdp1 INTERGENIC
3R	10103283	3R_10103283_SNP [dm3] 3R_14277561_SNP [dm6]	C	A	1.049e^-4	0.425	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21628619	3R_21628619_DEL [dm3] 3R_25802897_DEL [dm6]	AA	A	1.050e^-4	0.425	INTERGENIC
2R	17580635	2R_17580635_SNP [dm3] 2R_21693130_SNP [dm6]	A	T	1.054e^-4	0.425	SYNONYMOUS_CODING CngB DOWNSTREAM Ppcdc & 1 other	TF binding site mE1_TFBS_cad
3R	1727675	3R_1727675_SNP [dm3] 3R_5901953_SNP [dm6]	C	T	1.060e^-4	0.426	INTRON CG34113	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2519372	2L_2519372_SNP [dm3] 2L_2519372_SNP [dm6]	C	T	1.063e^-4	0.426	INTERGENIC
3R	3278532	3R_3278532_SNP [dm3] 3R_7452810_SNP [dm6]	A	G	1.064e^-4	0.426	DOWNSTREAM tRNA:V3b:84Da INTERGENIC
3L	9011590	3L_9011590_INS [dm3] 3L_9018490_INS [dm6]	C	CGTGATTACATAC...	1.065e^-4	0.426	INTRON Doc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	2051344	3R_2051344_SNP [dm3] 3R_6225622_SNP [dm6]	T	A	1.071e^-4	0.426	INTERGENIC
2R	18231607	2R_18231607_SNP [dm3] 2R_22344102_SNP [dm6]	G	A	1.076e^-4	0.426	INTRON Liprin-gamma
3R	9606318	3R_9606318_SNP [dm3] 3R_13780596_SNP [dm6]	A	G	1.079e^-4	0.426	SYNONYMOUS_CODING CG9288 UTR_3_PRIME CG42375 UPSTREAM CG9286	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	1971593	3R_1971593_SNP [dm3] 3R_6145871_SNP [dm6]	A	G	1.082e^-4	0.426	INTERGENIC
X	2313885	X_2313885_SNP [dm3] X_2419852_SNP [dm6]	A	C	1.084e^-4	0.426	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_kn
3R	22782537	3R_22782537_SNP [dm3] 3R_26956815_SNP [dm6]	T	G	1.085e^-4	0.426	INTRON CG6330	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
3L	8357017	3L_8357017_SNP [dm3] 3L_8363917_SNP [dm6]	T	A	1.088e^-4	0.426	INTERGENIC
3R	23888945	3R_23888945_SNP [dm3] 3R_28063223_SNP [dm6]	T	A	1.090e^-4	0.426	INTRON CG34362
3R	2062966	3R_2062966_SNP [dm3] 3R_6237244_SNP [dm6]	A	C	1.093e^-4	0.426	DOWNSTREAM Osi6 INTERGENIC
3L	22545881	3L_22545881_SNP [dm3] 3L_22552781_SNP [dm6]	A	G	1.094e^-4	0.426	DOWNSTREAM Trxr-2 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	2066452	3R_2066452_SNP [dm3] 3R_6240730_SNP [dm6]	G	C	1.094e^-4	0.426	INTERGENIC
2L	6959202	2L_6959202_SNP [dm3] 2L_6959202_SNP [dm6]	A	G	1.095e^-4	0.426	NON_SYNONYMOUS_CODING Atac1 DOWNSTREAM CG3430
2R	19092428	2R_19092428_SNP [dm3] 2R_23204905_SNP [dm6]	T	C	1.096e^-4	0.426	UPSTREAM CG34371 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	3870944	X_3870944_SNP [dm3] X_3976911_SNP [dm6]	C	T	1.099e^-4	0.427	INTERGENIC
2R	19132279	2R_19132279_SNP [dm3] 2R_23244756_SNP [dm6]	G	A	1.103e^-4	0.427	SYNONYMOUS_CODING yip3
2R	18740115	2R_18740115_SNP [dm3] 2R_22852592_SNP [dm6]	A	G	1.108e^-4	0.427	INTRON CG13531	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24234829	3R_24234829_SNP [dm3] 3R_28409107_SNP [dm6]	T	C	1.111e^-4	0.427	INTERGENIC
3L	3800769	3L_3800769_SNP [dm3] 3L_3800769_SNP [dm6]	A	G	1.111e^-4	0.427	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site mE1_TFBS_cad
3R	22779636	3R_22779636_SNP [dm3] 3R_26953914_SNP [dm6]	G	C	1.113e^-4	0.427	UPSTREAM CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	4229459	2L_4229459_SNP [dm3] 2L_4229459_SNP [dm6]	A	T	1.115e^-4	0.427	DOWNSTREAM RpL40 & 1 other INTERGENIC
2R	12543418	2R_12543418_SNP [dm3] 2R_16655913_SNP [dm6]	G	A	1.117e^-4	0.427	SYNONYMOUS_CODING Picot UPSTREAM Nach	TF binding site mE1_TFBS_cad
2L	6968839	2L_6968839_SNP [dm3] 2L_6968839_SNP [dm6]	G	A	1.126e^-4	0.427	UTR_3_PRIME snRNP-U1-70K DOWNSTREAM snRNP-U1-70K	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17423047	2R_17423047_SNP [dm3] 2R_21535542_SNP [dm6]	T	A	1.127e^-4	0.427	DOWNSTREAM CG30286 INTRON Egfr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5718554	2L_5718554_SNP [dm3] 2L_5718554_SNP [dm6]	G	T	1.128e^-4	0.427	SYNONYMOUS_CODING CG11149 DOWNSTREAM CG34011
3R	2676819	3R_2676819_SNP [dm3] 3R_6851097_SNP [dm6]	G	A	1.131e^-4	0.427	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	14736880	3R_14736880_SNP [dm3] 3R_18911158_SNP [dm6]	G	T	1.133e^-4	0.427	UTR_3_PRIME CG14291 DOWNSTREAM EndoA	TF binding site mE1_TFBS_cad
3R	24102257	3R_24102257_SNP [dm3] 3R_28276535_SNP [dm6]	T	C	1.134e^-4	0.427	INTERGENIC
3L	5132943	3L_5132943_SNP [dm3] 3L_5139843_SNP [dm6]	G	A	1.148e^-4	0.427	SYNONYMOUS_CODING CHMP2B UPSTREAM Prpk DOWNSTREAM CG10672	TF binding site BDTNP1_TFBS_dl
3R	1631101	3R_1631101_SNP [dm3] 3R_5805379_SNP [dm6]	G	A	1.152e^-4	0.427	INTRON CG11000	TF binding site BDTNP1_TFBS_hb
2R	16825740	2R_16825740_SNP [dm3] 2R_20938235_SNP [dm6]	T	C	1.152e^-4	0.427	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	14738885	3R_14738885_SNP [dm3] 3R_18913163_SNP [dm6]	G	A	1.158e^-4	0.427	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	2049711	3R_2049711_SNP [dm3] 3R_6223989_SNP [dm6]	C	T	1.159e^-4	0.427	INTERGENIC
3R	524777	3R_524777_SNP [dm3] 3R_4699055_SNP [dm6]	T	C	1.161e^-4	0.427	INTRON CG43427
2R	18593939	2R_18593939_SNP [dm3] 2R_22706434_SNP [dm6]	A	G	1.163e^-4	0.427	SYNONYMOUS_CODING Obp58c UPSTREAM Obp58d DOWNSTREAM Obp58b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18478087	2R_18478087_INS [dm3] 2R_22590582_INS [dm6]	A	AAGAAA	1.164e^-4	0.427	INTRON dnr1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	2050529	3R_2050529_SNP [dm3] 3R_6224807_SNP [dm6]	A	G	1.168e^-4	0.427	INTERGENIC
3R	4571879	3R_4571879_SNP [dm3] 3R_8746157_SNP [dm6]	G	A	1.168e^-4	0.427	UPSTREAM CG9801 INTRON CG9801	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2162131	2L_2162131_SNP [dm3] 2L_2162131_SNP [dm6]	A	G	1.172e^-4	0.427	UPSTREAM aop INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	2775724	3L_2775724_SNP [dm3] 3L_2775724_SNP [dm6]	G	C	1.172e^-4	0.427	NON_SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8353388	2L_8353388_SNP [dm3] 2L_8353388_SNP [dm6]	C	A	1.174e^-4	0.427	NON_SYNONYMOUS_CODING Mur29B	TF binding site mE1_TFBS_sens
2L	15206480	2L_15206480_SNP [dm3] 2L_15206480_SNP [dm6]	A	G	1.178e^-4	0.427	INTERGENIC
3R	9606231	3R_9606231_SNP [dm3] 3R_13780509_SNP [dm6]	C	T	1.180e^-4	0.427	SYNONYMOUS_CODING CG9288 UTR_3_PRIME CG42375 UPSTREAM CG9286	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	1604194	3R_1604194_SNP [dm3] 3R_5778472_SNP [dm6]	T	A	1.184e^-4	0.427	UPSTREAM CG2082 & 1 other INTRON CG2082	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4655405	2L_4655405_SNP [dm3] 2L_4655405_SNP [dm6]	T	A	1.196e^-4	0.427	INTERGENIC
2L	1057481	2L_1057481_SNP [dm3] 2L_1057481_SNP [dm6]	T	C	1.200e^-4	0.427	INTRON S	TF binding site mE1_TFBS_sens
3R	21360112	3R_21360112_SNP [dm3] 3R_25534390_SNP [dm6]	A	G	1.205e^-4	0.427	INTRON msi
3R	13736964	3R_13736964_DEL [dm3] 3R_17911242_DEL [dm6]	TATT	T	1.207e^-4	0.427	UPSTREAM CG43445 INTRON Rim
X	8372692	X_8372692_SNP [dm3] X_8478659_SNP [dm6]	C	T	1.208e^-4	0.427	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223	regulatory region REDfly_CRMs
3L	3586396	3L_3586396_DEL [dm3] 3L_3586396_DEL [dm6]	TTAAGGAA	T	1.216e^-4	0.427	INTRON Eip63E
3R	19332883	3R_19332883_SNP [dm3] 3R_23507161_SNP [dm6]	T	G	1.217e^-4	0.427	SYNONYMOUS_CODING CG34289
3L	3718444	3L_3718444_SNP [dm3] 3L_3718444_SNP [dm6]	C	T	1.219e^-4	0.427	SYNONYMOUS_CODING CG32264	TF binding site mE1_TFBS_cad
2R	10807808	2R_10807808_SNP [dm3] 2R_14920303_SNP [dm6]	A	G	1.221e^-4	0.427	INTRON CG10249	TF binding site mE1_TFBS_cnc
3R	22779418	3R_22779418_SNP [dm3] 3R_26953696_SNP [dm6]	T	C	1.221e^-4	0.427	UPSTREAM CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	1626643	3R_1626643_SNP [dm3] 3R_5800921_SNP [dm6]	G	C	1.227e^-4	0.427	DOWNSTREAM CG10979 INTERGENIC
2R	17510387	2R_17510387_SNP [dm3] 2R_21622882_SNP [dm6]	A	G	1.227e^-4	0.427	SYNONYMOUS_CODING PTP-ER	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17575688	2L_17575688_SNP [dm3] 2L_17575688_SNP [dm6]	A	G	1.228e^-4	0.427	UPSTREAM CR45358 DOWNSTREAM mir-287 INTERGENIC
3L	14602969	3L_14602969_SNP [dm3] 3L_14609869_SNP [dm6]	T	A	1.229e^-4	0.427	INTERGENIC
3R	8379057	3R_8379057_SNP [dm3] 3R_12553335_SNP [dm6]	C	A	1.229e^-4	0.427	INTRON Octbeta2R
3R	25575075	3R_25575075_SNP [dm3] 3R_29749353_SNP [dm6]	T	G	1.230e^-4	0.427	UTR_5_PRIME yata UPSTREAM ATPsyn-gamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
X	22226220	X_22226220_SNP [dm3] X_22824384_SNP [dm6]	A	T	1.233e^-4	0.427	UTR_3_PRIME fog	TF binding site BDTNP1_TFBS_twi mE1_TFBS_zfh1
2R	18231582	2R_18231582_SNP [dm3] 2R_22344077_SNP [dm6]	T	G	1.234e^-4	0.427	INTRON Liprin-gamma
3R	1999623	3R_1999623_SNP [dm3] 3R_6173901_SNP [dm6]	C	A	1.237e^-4	0.427	NON_SYNONYMOUS_CODING Osi1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18987000	3L_18987000_SNP [dm3] 3L_18993900_SNP [dm6]	C	G	1.241e^-4	0.427	NON_SYNONYMOUS_CODING CG18135 UPSTREAM CG18135 INTRON CG18135	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	22779547	3R_22779547_SNP [dm3] 3R_26953825_SNP [dm6]	T	C	1.244e^-4	0.427	UPSTREAM CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	4583173	3R_4583173_SNP [dm3] 3R_8757451_SNP [dm6]	T	C	1.245e^-4	0.427	INTRON CG11768 & 1 other
3R	2041857	3R_2041857_SNP [dm3] 3R_6216135_SNP [dm6]	G	C	1.246e^-4	0.427	SYNONYMOUS_CODING Osi3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3596185	2L_3596185_SNP [dm3] 2L_3596185_SNP [dm6]	T	C	1.250e^-4	0.427	INTERGENIC
3R	23209886	3R_23209886_SNP [dm3] 3R_27384164_SNP [dm6]	A	G	1.258e^-4	0.427	INTRON side
2R	6143187	2R_6143187_SNP [dm3] 2R_10255682_SNP [dm6]	C	T	1.260e^-4	0.427	DOWNSTREAM CG12913 INTERGENIC
X	15087736	X_15087736_SNP [dm3] X_15193703_SNP [dm6]	G	A	1.261e^-4	0.427	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21576757	3R_21576757_SNP [dm3] 3R_25751035_SNP [dm6]	A	T	1.263e^-4	0.427	INTRON LpR1
3R	2064258	3R_2064258_SNP [dm3] 3R_6238536_SNP [dm6]	G	A	1.265e^-4	0.427	INTERGENIC	transposable element FlyBase
2L	15317335	2L_15317335_SNP [dm3] 2L_15317335_SNP [dm6]	C	A	1.265e^-4	0.427	DOWNSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	1051615	3R_1051615_DEL [dm3] 3R_5225893_DEL [dm6]	AGTTTT	CCTG	1.266e^-4	0.427	UPSTREAM Vps37B DOWNSTREAM CG14664 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2L	1728323	2L_1728323_SNP [dm3] 2L_1728323_SNP [dm6]	C	T	1.266e^-4	0.427	UTR_5_PRIME Eno UPSTREAM Eno & 1 other INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26281953	3R_26281953_SNP [dm3] 3R_30456231_SNP [dm6]	G	A	1.267e^-4	0.427	UPSTREAM aralar1 DOWNSTREAM CG2224 INTERGENIC
3L	6487225	3L_6487225_SNP [dm3] 3L_6494125_SNP [dm6]	A	G	1.268e^-4	0.427	SYNONYMOUS_CODING CG10144	TF binding site mE1_TFBS_sens
2L	11454661	2L_11454661_SNP [dm3] 2L_11454661_SNP [dm6]	A	G	1.268e^-4	0.427	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26283952	3R_26283952_SNP [dm3] 3R_30458230_SNP [dm6]	G	A	1.275e^-4	0.427	INTRON CG2224	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8366234	2R_8366234_SNP [dm3] 2R_12478729_SNP [dm6]	G	A	1.281e^-4	0.427	INTRON Dh44-R2
2R	8371843	2R_8371843_SNP [dm3] 2R_12484338_SNP [dm6]	T	C	1.281e^-4	0.427	INTRON Dh44-R2
3R	23571252	3R_23571252_SNP [dm3] 3R_27745530_SNP [dm6]	A	G	1.281e^-4	0.427	INTRON Ets98B
3L	5883389	3L_5883389_SNP [dm3] 3L_5890289_SNP [dm6]	A	G	1.288e^-4	0.427	INTERGENIC
2L	4229473	2L_4229473_SNP [dm3] 2L_4229473_SNP [dm6]	G	A	1.288e^-4	0.427	DOWNSTREAM RpL40 & 1 other INTERGENIC
3L	6572053	3L_6572053_SNP [dm3] 3L_6578953_SNP [dm6]	T	G	1.289e^-4	0.427	INTRON CG18769 & 1 other
3R	3268129	3R_3268129_SNP [dm3] 3R_7442407_SNP [dm6]	C	T	1.291e^-4	0.427	DOWNSTREAM CG14598 INTERGENIC
3R	2089302	3R_2089302_SNP [dm3] 3R_6263580_SNP [dm6]	G	A	1.291e^-4	0.427	UPSTREAM Osi10 INTERGENIC
2L	13463142	2L_13463142_SNP [dm3] 2L_13463142_SNP [dm6]	T	G	1.292e^-4	0.427	INTRON CG42784
3R	2062438	3R_2062438_SNP [dm3] 3R_6236716_SNP [dm6]	C	T	1.295e^-4	0.427	UTR_3_PRIME Osi6
3R	14809694	3R_14809694_SNP [dm3] 3R_18983972_SNP [dm6]	G	A	1.297e^-4	0.427	UPSTREAM gukh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12004994	3L_12004994_SNP [dm3] 3L_12011894_SNP [dm6]	G	A	1.297e^-4	0.427	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17184441	3R_17184441_SNP [dm3] 3R_21358719_SNP [dm6]	T	A	1.298e^-4	0.427	START_GAINED pre-mod_mdg4_-I & 3 others UTR_5_PRIME pre-mod_mdg4_-I & 3 others UTR_3_PRIME pre-mod_mdg4_-K & 1 other INTRON mod_mdg4_ & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	5587307	2R_5587307_SNP [dm3] 2R_9699802_SNP [dm6]	A	T	1.302e^-4	0.427	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	5132982	3L_5132982_SNP [dm3] 3L_5139882_SNP [dm6]	G	A	1.302e^-4	0.427	SYNONYMOUS_CODING CHMP2B UPSTREAM Prpk DOWNSTREAM CG10672	TF binding site BDTNP1_TFBS_dl
3L	1678532	3L_1678532_SNP [dm3] 3L_1678532_SNP [dm6]	G	C	1.303e^-4	0.427	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3R	25090953	3R_25090953_SNP [dm3] 3R_29265231_SNP [dm6]	T	G	1.303e^-4	0.427	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	3268127	3R_3268127_SNP [dm3] 3R_7442405_SNP [dm6]	A	G	1.311e^-4	0.427	DOWNSTREAM CG14598 INTERGENIC
3R	22907627	3R_22907627_SNP [dm3] 3R_27081905_SNP [dm6]	G	T	1.312e^-4	0.427	SYNONYMOUS_CODING CG14257 INTRON CG14257	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13047573	2L_13047573_SNP [dm3] 2L_13047573_SNP [dm6]	T	C	1.313e^-4	0.427	INTRON CG9932
3R	7871006	3R_7871006_SNP [dm3] 3R_12045284_SNP [dm6]	G	T	1.314e^-4	0.427	INTERGENIC
3R	4650174	3R_4650174_SNP [dm3] 3R_8824452_SNP [dm6]	A	G	1.314e^-4	0.427	START_GAINED CG8379 UTR_5_PRIME CG8379 UPSTREAM CG9836	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	8313205	2R_8313205_INS [dm3] 2R_12425700_INS [dm6]	G	GG	1.314e^-4	0.427	UTR_5_PRIME CG8525 DOWNSTREAM CG8520	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13913787	3R_13913787_SNP [dm3] 3R_18088065_SNP [dm6]	T	C	1.315e^-4	0.427	INTERGENIC
3R	1767290	3R_1767290_SNP [dm3] 3R_5941568_SNP [dm6]	T	C	1.317e^-4	0.427	INTRON CG34113
2R	19145738	2R_19145738_SNP [dm3] 2R_23258215_SNP [dm6]	G	A	1.318e^-4	0.427	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22783321	3R_22783321_SNP [dm3] 3R_26957599_SNP [dm6]	G	T	1.318e^-4	0.427	INTRON CG6330
2R	17510714	2R_17510714_SNP [dm3] 2R_21623209_SNP [dm6]	A	G	1.319e^-4	0.427	SYNONYMOUS_CODING PTP-ER	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	7458027	2L_7458027_INS [dm3] 2L_7458027_INS [dm6]	C	CATGGAATTGACTCCC...	1.322e^-4	0.427	UPSTREAM Gr28b INTRON Gr28b
3R	26066485	3R_26066485_DEL [dm3] 3R_30240763_DEL [dm6]	TG	T	1.323e^-4	0.427	DOWNSTREAM CG9737 INTERGENIC
3L	958571	3L_958571_SNP [dm3] 3L_958571_SNP [dm6]	G	C	1.329e^-4	0.427	INTRON Glut1	TF binding site mE1_TFBS_Trl
2R	17342457	2R_17342457_SNP [dm3] 2R_21454952_SNP [dm6]	C	T	1.332e^-4	0.427	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1450952	2L_1450952_SNP [dm3] 2L_1450952_SNP [dm6]	T	A	1.333e^-4	0.427	INTERGENIC
X	18849283	X_18849283_SNP [dm3] X_18955250_SNP [dm6]	C	T	1.338e^-4	0.427	INTRON CG43759
2L	11437787	2L_11437787_SNP [dm3] 2L_11437787_SNP [dm6]	A	T	1.339e^-4	0.427	SYNONYMOUS_CODING salm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	11145428	3R_11145428_SNP [dm3] 3R_15319706_SNP [dm6]	T	C	1.341e^-4	0.427	SYNONYMOUS_CODING CG6276 UPSTREAM CG44040	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14688599	3R_14688599_SNP [dm3] 3R_18862877_SNP [dm6]	G	T	1.341e^-4	0.427	INTERGENIC
3R	21384222	3R_21384222_SNP [dm3] 3R_25558500_SNP [dm6]	A	G	1.342e^-4	0.427	INTRON msi
3R	1942007	3R_1942007_SNP [dm3] 3R_6116285_SNP [dm6]	C	A	1.342e^-4	0.427	INTERGENIC
3R	19643874	3R_19643874_DEL [dm3] 3R_23818152_DEL [dm6]	ATTAA	A	1.345e^-4	0.427	INTRON CG34355 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	17025221	X_17025221_SNP [dm3] X_17131188_SNP [dm6]	A	T	1.346e^-4	0.427	INTRON CG5004
3L	1686295	3L_1686295_SNP [dm3] 3L_1686295_SNP [dm6]	G	T	1.346e^-4	0.427	INTRON CG7991
3R	2074878	3R_2074878_SNP [dm3] 3R_6249156_SNP [dm6]	C	T	1.349e^-4	0.427	UTR_5_PRIME Osi7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	2062917	2L_2062917_SNP [dm3] 2L_2062917_SNP [dm6]	A	G	1.350e^-4	0.427	INTRON dpr3	TF binding site mE1_TFBS_chinmo
3R	21575334	3R_21575334_SNP [dm3] 3R_25749612_SNP [dm6]	G	A	1.350e^-4	0.427	INTRON LpR1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8320705	3L_8320705_SNP [dm3] 3L_8327605_SNP [dm6]	C	T	1.352e^-4	0.427	UTR_3_PRIME CG34461 UPSTREAM CG34462 DOWNSTREAM CG34461	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	18903859	2L_18903859_SNP [dm3] 2L_18903859_SNP [dm6]	A	T	1.354e^-4	0.427	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	3814776	3L_3814776_DEL [dm3] 3L_3814776_DEL [dm6]	AA	A	1.362e^-4	0.427	DOWNSTREAM CG12006 & 1 other INTRON Scsalpha EXON CR43932	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4574698	3R_4574698_SNP [dm3] 3R_8748976_SNP [dm6]	A	G	1.363e^-4	0.427	DOWNSTREAM CG34135 & 1 other INTRON CG8223	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7869469	3R_7869469_SNP [dm3] 3R_12043747_SNP [dm6]	A	G	1.365e^-4	0.427	DOWNSTREAM CG14736 INTERGENIC
3L	17098633	3L_17098633_SNP [dm3] 3L_17105533_SNP [dm6]	C	T	1.369e^-4	0.427	INTRON Rbp6
2L	4229483	2L_4229483_SNP [dm3] 2L_4229483_SNP [dm6]	T	A	1.372e^-4	0.427	DOWNSTREAM RpL40 & 1 other INTERGENIC
2L	4229484	2L_4229484_SNP [dm3] 2L_4229484_SNP [dm6]	T	G	1.372e^-4	0.427	DOWNSTREAM RpL40 & 1 other INTERGENIC
X	7487024	X_7487024_SNP [dm3] X_7592991_SNP [dm6]	G	A	1.372e^-4	0.427	INTERGENIC	regulatory region REDfly_CRMs
3R	2042077	3R_2042077_SNP [dm3] 3R_6216355_SNP [dm6]	G	A	1.373e^-4	0.427	INTRON Osi3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	22783356	3R_22783356_SNP [dm3] 3R_26957634_SNP [dm6]	C	T	1.376e^-4	0.427	INTRON CG6330
3R	743642	3R_743642_SNP [dm3] 3R_4917920_SNP [dm6]	A	G	1.379e^-4	0.427	NON_SYNONYMOUS_CODING Cdep
3R	2057033	3R_2057033_SNP [dm3] 3R_6231311_SNP [dm6]	T	C	1.379e^-4	0.427	INTERGENIC
3R	2042078	3R_2042078_SNP [dm3] 3R_6216356_SNP [dm6]	A	G	1.381e^-4	0.427	INTRON Osi3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	4044482	X_4044482_SNP [dm3] X_4150449_SNP [dm6]	C	A	1.390e^-4	0.428	INTRON Fas2
3R	11206045	3R_11206045_SNP [dm3] 3R_15380323_SNP [dm6]	T	A	1.391e^-4	0.428	INTRON Rbp
3R	9606309	3R_9606309_SNP [dm3] 3R_13780587_SNP [dm6]	A	G	1.392e^-4	0.428	SYNONYMOUS_CODING CG9288 UTR_3_PRIME CG42375 UPSTREAM CG9286	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17581744	2R_17581744_SNP [dm3] 2R_21694239_SNP [dm6]	A	G	1.397e^-4	0.428	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad
2L	4229480	2L_4229480_SNP [dm3] 2L_4229480_SNP [dm6]	G	A	1.398e^-4	0.428	DOWNSTREAM RpL40 & 1 other INTERGENIC
3L	20842581	3L_20842581_INS [dm3] 3L_20849481_INS [dm6]	GG	TCA	1.405e^-4	0.429	INTRON CG32432
3R	3265727	3R_3265727_SNP [dm3] 3R_7440005_SNP [dm6]	G	A	1.406e^-4	0.429	INTRON CG14598
3R	22783290	3R_22783290_SNP [dm3] 3R_26957568_SNP [dm6]	T	C	1.410e^-4	0.429	INTRON CG6330
2L	11454158	2L_11454158_SNP [dm3] 2L_11454158_SNP [dm6]	C	A	1.413e^-4	0.429	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	1814515	3R_1814515_INS [dm3] 3R_5988793_INS [dm6]	G	GCG	1.413e^-4	0.429	UPSTREAM CR44927 INTERGENIC
3R	22782943	3R_22782943_SNP [dm3] 3R_26957221_SNP [dm6]	C	A	1.420e^-4	0.429	INTRON CG6330	TF binding site mE1_TFBS_inv
3R	9306799	3R_9306799_SNP [dm3] 3R_13481077_SNP [dm6]	A	C	1.421e^-4	0.429	INTERGENIC
2L	14366731	2L_14366731_SNP [dm3] 2L_14366731_SNP [dm6]	T	A	1.423e^-4	0.429	UTR_3_PRIME spel1	TF binding site mE1_TFBS_cad
3R	14995445	3R_14995445_SNP [dm3] 3R_19169723_SNP [dm6]	A	G	1.425e^-4	0.429	SYNONYMOUS_CODING sqz	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	514436	3R_514436_SNP [dm3] 3R_4688714_SNP [dm6]	T	A	1.426e^-4	0.429	INTRON CG43427
3R	6952180	3R_6952180_SNP [dm3] 3R_11126458_SNP [dm6]	C	T	1.432e^-4	0.429	DOWNSTREAM Ugt86Dd INTERGENIC
3R	1626949	3R_1626949_SNP [dm3] 3R_5801227_SNP [dm6]	G	A	1.433e^-4	0.429	INTERGENIC
X	8375727	X_8375727_SNP [dm3] X_8481694_SNP [dm6]	A	G	1.435e^-4	0.429	UPSTREAM Cp38 INTRON CG33223
2L	7457981	2L_7457981_SNP [dm3] 2L_7457981_SNP [dm6]	G	A	1.436e^-4	0.429	UPSTREAM Gr28b INTRON Gr28b
2L	7457999	2L_7457999_SNP [dm3] 2L_7457999_SNP [dm6]	C	T	1.436e^-4	0.429	UPSTREAM Gr28b INTRON Gr28b
3R	532481	3R_532481_SNP [dm3] 3R_4706759_SNP [dm6]	C	T	1.436e^-4	0.429	INTRON CG43427	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19524452	3L_19524452_SNP [dm3] 3L_19531352_SNP [dm6]	T	C	1.444e^-4	0.431	INTERGENIC
3L	1678450	3L_1678450_SNP [dm3] 3L_1678450_SNP [dm6]	T	C	1.452e^-4	0.432	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3R	21586499	3R_21586499_SNP [dm3] 3R_25760777_SNP [dm6]	C	A	1.457e^-4	0.432	UPSTREAM LpR1 INTRON LpR1
3L	1686395	3L_1686395_SNP [dm3] 3L_1686395_SNP [dm6]	A	G	1.457e^-4	0.432	INTRON CG7991
X	8228529	X_8228529_SNP [dm3] X_8334496_SNP [dm6]	C	G	1.457e^-4	0.432	INTRON nAChRalpha3
2R	6129089	2R_6129089_SNP [dm3] 2R_10241584_SNP [dm6]	A	T	1.470e^-4	0.432	INTRON Hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7157579	3L_7157579_SNP [dm3] 3L_7164479_SNP [dm6]	G	A	1.473e^-4	0.432	SYNONYMOUS_CODING Dscam2
3L	12331009	3L_12331009_SNP [dm3] 3L_12337909_SNP [dm6]	A	G	1.478e^-4	0.432	DOWNSTREAM CG10418 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11442809	2L_11442809_SNP [dm3] 2L_11442809_SNP [dm6]	A	C	1.478e^-4	0.432	INTRON salm
X	15087762	X_15087762_SNP [dm3] X_15193729_SNP [dm6]	C	A	1.480e^-4	0.432	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	2045804	2R_2045804_SNP [dm3] 2R_6158299_SNP [dm6]	T	C	1.482e^-4	0.432	UPSTREAM CR43904 INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19572049	2R_19572049_SNP [dm3] 2R_23684526_SNP [dm6]	G	A	1.488e^-4	0.432	UTR_3_PRIME St3 DOWNSTREAM l_2_efl INTRON St3	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	5718671	2L_5718671_SNP [dm3] 2L_5718671_SNP [dm6]	C	T	1.488e^-4	0.432	SYNONYMOUS_CODING CG11149 DOWNSTREAM CG34011
3R	1689851	3R_1689851_SNP [dm3] 3R_5864129_SNP [dm6]	G	A	1.493e^-4	0.432	UTR_3_PRIME CG34113
3R	1649664	3R_1649664_SNP [dm3] 3R_5823942_SNP [dm6]	C	G	1.494e^-4	0.432	SYNONYMOUS_CODING CG2023 UPSTREAM dgrn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26281261	3R_26281261_SNP [dm3] 3R_30455539_SNP [dm6]	C	T	1.494e^-4	0.432	DOWNSTREAM CG2224 INTRON aralar1
3R	19859390	3R_19859390_SNP [dm3] 3R_24033668_SNP [dm6]	C	T	1.495e^-4	0.432	SYNONYMOUS_CODING Ime4 DOWNSTREAM Miro	TF binding site mE1_TFBS_sens
3L	6572263	3L_6572263_SNP [dm3] 3L_6579163_SNP [dm6]	C	T	1.499e^-4	0.432	INTRON CG18769 & 1 other
3R	2032661	3R_2032661_SNP [dm3] 3R_6206939_SNP [dm6]	T	A	1.501e^-4	0.432	INTRON Osi24	TF binding site mE1_TFBS_chinmo
3L	12940648	3L_12940648_SNP [dm3] 3L_12947548_SNP [dm6]	T	G	1.503e^-4	0.432	INTERGENIC	TF binding site mE1_TFBS_inv
X	5507225	X_5507225_SNP [dm3] X_5613192_SNP [dm6]	T	C	1.504e^-4	0.432	DOWNSTREAM Vsx1 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb
3L	1247387	3L_1247387_SNP [dm3] 3L_1247387_SNP [dm6]	C	T	1.508e^-4	0.432	SYNONYMOUS_CODING Psf1 UPSTREAM Sac1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	4375698	3L_4375698_SNP [dm3] 3L_4375698_SNP [dm6]	C	T	1.509e^-4	0.432	INTRON DopEcR
X	16422113	X_16422113_SNP [dm3] X_16528080_SNP [dm6]	G	A	1.510e^-4	0.432	UPSTREAM para INTRON para
3R	2029522	3R_2029522_SNP [dm3] 3R_6203800_SNP [dm6]	A	T	1.510e^-4	0.432	INTRON Osi24
3R	13983209	3R_13983209_SNP [dm3] 3R_18157487_SNP [dm6]	C	A	1.513e^-4	0.432	UPSTREAM CR45103 DOWNSTREAM CR45104 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	1982781	3R_1982781_INS [dm3] 3R_6157059_INS [dm6]	C	CGATGATC	1.519e^-4	0.432	UTR_5_PRIME CG31559	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	4587033	3R_4587033_SNP [dm3] 3R_8761311_SNP [dm6]	A	C	1.520e^-4	0.432	INTRON CG11768 & 1 other
3R	2037367	3R_2037367_SNP [dm3] 3R_6211645_SNP [dm6]	G	A	1.522e^-4	0.432	NON_SYNONYMOUS_CODING Osi2
2L	11404691	2L_11404691_SNP [dm3] 2L_11404691_SNP [dm6]	A	G	1.523e^-4	0.432	INTERGENIC	regulatory region REDfly_CRMs
3R	2069520	3R_2069520_SNP [dm3] 3R_6243798_SNP [dm6]	T	C	1.524e^-4	0.432	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1678889	3L_1678889_SNP [dm3] 3L_1678889_SNP [dm6]	A	G	1.527e^-4	0.432	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3R	1624542	3R_1624542_SNP [dm3] 3R_5798820_SNP [dm6]	T	A	1.528e^-4	0.432	UTR_3_PRIME CG10979 DOWNSTREAM CG10979	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	2064097	3R_2064097_SNP [dm3] 3R_6238375_SNP [dm6]	A	G	1.529e^-4	0.432	INTERGENIC	transposable element FlyBase
3R	2082708	3R_2082708_SNP [dm3] 3R_6256986_SNP [dm6]	T	A	1.535e^-4	0.432	DOWNSTREAM Osi8 INTERGENIC
2L	2062928	2L_2062928_SNP [dm3] 2L_2062928_SNP [dm6]	C	G	1.541e^-4	0.432	INTRON dpr3	TF binding site mE1_TFBS_chinmo
2L	5336035	2L_5336035_SNP [dm3] 2L_5336035_SNP [dm6]	G	C	1.546e^-4	0.432	UTR_5_PRIME fusl INTRON fusl
2L	7751089	2L_7751089_INS [dm3] 2L_7751089_INS [dm6]	T	TT	1.547e^-4	0.432	INTERGENIC
3R	14816816	3R_14816816_SNP [dm3] 3R_18991094_SNP [dm6]	C	A	1.548e^-4	0.432	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	6955767	2L_6955767_SNP [dm3] 2L_6955767_SNP [dm6]	T	G	1.549e^-4	0.432	SYNONYMOUS_CODING CG13775	TF binding site mE1_TFBS_sens
3R	3219189	3R_3219189_SNP [dm3] 3R_7393467_SNP [dm6]	C	T	1.550e^-4	0.432	INTERGENIC
3R	4645228	3R_4645228_SNP [dm3] 3R_8819506_SNP [dm6]	A	G	1.552e^-4	0.432	UPSTREAM CR43130 INTRON CG9821	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	7637026	2R_7637026_SNP [dm3] 2R_11749521_SNP [dm6]	G	C	1.555e^-4	0.432	INTERGENIC
3R	3465267	3R_3465267_SNP [dm3] 3R_7639545_SNP [dm6]	T	C	1.558e^-4	0.432	UPSTREAM CG34127 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6495842	3R_6495842_SNP [dm3] 3R_10670120_SNP [dm6]	T	C	1.561e^-4	0.432	INTERGENIC
3R	5683250	3R_5683250_SNP [dm3] 3R_9857528_SNP [dm6]	C	T	1.562e^-4	0.432	INTRON Teh1
3L	12031885	3L_12031885_SNP [dm3] 3L_12038785_SNP [dm6]	A	C	1.566e^-4	0.432	INTRON rols	TF binding site mE1_TFBS_inv
3R	2023353	3R_2023353_SNP [dm3] 3R_6197631_SNP [dm6]	C	A	1.566e^-4	0.432	INTERGENIC
3R	1981300	3R_1981300_SNP [dm3] 3R_6155578_SNP [dm6]	C	A	1.567e^-4	0.432	INTRON CG31559
3L	20621731	3L_20621731_SNP [dm3] 3L_20628631_SNP [dm6]	A	T	1.568e^-4	0.432	UPSTREAM CR44683 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	3374864	2L_3374864_SNP [dm3] 2L_3374864_SNP [dm6]	A	G	1.569e^-4	0.432	SYNONYMOUS_CODING CG15412 DOWNSTREAM CG9662	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7013659	3L_7013659_SNP [dm3] 3L_7020559_SNP [dm6]	T	G	1.575e^-4	0.432	INTRON Mp
3L	17572666	3L_17572666_SNP [dm3] 3L_17579566_SNP [dm6]	G	C	1.576e^-4	0.432	INTRON Eip74EF
3L	18879238	3L_18879238_SNP [dm3] 3L_18886138_SNP [dm6]	G	A	1.580e^-4	0.432	INTRON CG3961
3R	2061247	3R_2061247_SNP [dm3] 3R_6235525_SNP [dm6]	T	A	1.582e^-4	0.432	INTRON Osi6
3L	10310785	3L_10310785_SNP [dm3] 3L_10317685_SNP [dm6]	C	G	1.585e^-4	0.432	INTERGENIC
3R	26283965	3R_26283965_DEL [dm3] 3R_30458243_DEL [dm6]	AAG	A	1.585e^-4	0.432	INTRON CG2224	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11201042	2L_11201042_SNP [dm3] 2L_11201042_SNP [dm6]	A	G	1.588e^-4	0.432	INTRON Ca-beta
3R	26281886	3R_26281886_SNP [dm3] 3R_30456164_SNP [dm6]	G	A	1.589e^-4	0.432	UPSTREAM aralar1 DOWNSTREAM CG2224 INTERGENIC
3R	23966939	3R_23966939_SNP [dm3] 3R_28141217_SNP [dm6]	T	A	1.591e^-4	0.432	INTERGENIC
3R	953014	3R_953014_SNP [dm3] 3R_5127292_SNP [dm6]	G	C	1.591e^-4	0.432	UPSTREAM CG12007 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	23888997	3R_23888997_SNP [dm3] 3R_28063275_SNP [dm6]	C	G	1.592e^-4	0.432	INTRON CG34362
3R	25995689	3R_25995689_SNP [dm3] 3R_30169967_SNP [dm6]	G	A	1.593e^-4	0.432	SYNONYMOUS_CODING CG31028	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10041965	2L_10041965_SNP [dm3] 2L_10041965_SNP [dm6]	G	T	1.597e^-4	0.432	INTERGENIC
3L	661944	3L_661944_SNP [dm3] 3L_661944_SNP [dm6]	A	C	1.598e^-4	0.432	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25624122	3R_25624122_SNP [dm3] 3R_29798400_SNP [dm6]	A	G	1.598e^-4	0.432	SYNONYMOUS_CODING CG7837	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19033227	2R_19033227_SNP [dm3] 2R_23145704_SNP [dm6]	T	C	1.616e^-4	0.434	INTERGENIC
3R	25090994	3R_25090994_SNP [dm3] 3R_29265272_SNP [dm6]	T	A	1.616e^-4	0.434	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14774436	2R_14774436_SNP [dm3] 2R_18886931_SNP [dm6]	T	C	1.617e^-4	0.434	INTRON sano
2R	14774440	2R_14774440_SNP [dm3] 2R_18886935_SNP [dm6]	A	C	1.617e^-4	0.434	INTRON sano
3L	6817174	3L_6817174_SNP [dm3] 3L_6824074_SNP [dm6]	A	G	1.619e^-4	0.434	INTERGENIC	regulatory region REDfly_CRMs
2R	17529496	2R_17529496_SNP [dm3] 2R_21641991_SNP [dm6]	T	G	1.623e^-4	0.434	INTERGENIC
3R	775100	3R_775100_SNP [dm3] 3R_4949378_SNP [dm6]	G	A	1.626e^-4	0.434	UTR_3_PRIME UbcD6 DOWNSTREAM UbcD6
3R	24285750	3R_24285750_SNP [dm3] 3R_28460028_SNP [dm6]	C	A	1.627e^-4	0.434	INTRON beat-VI
3R	13930644	3R_13930644_SNP [dm3] 3R_18104922_SNP [dm6]	G	A	1.628e^-4	0.434	INTRON sr
3R	27182868	3R_27182868_SNP [dm3] 3R_31357146_SNP [dm6]	C	T	1.642e^-4	0.436	INTRON CG34347
2L	14366729	2L_14366729_SNP [dm3] 2L_14366729_SNP [dm6]	G	A	1.642e^-4	0.436	UTR_3_PRIME spel1	TF binding site mE1_TFBS_cad
2L	1211979	2L_1211979_SNP [dm3] 2L_1211979_SNP [dm6]	T	A	1.648e^-4	0.436	INTERGENIC
3R	10846312	3R_10846312_INS [dm3] 3R_15020590_INS [dm6]	T	TCCAG	1.649e^-4	0.436	INTERGENIC
2L	2684255	2L_2684255_SNP [dm3] 2L_2684255_SNP [dm6]	G	A	1.649e^-4	0.436	INTRON CG31690
3R	2676845	3R_2676845_SNP [dm3] 3R_6851123_SNP [dm6]	G	A	1.654e^-4	0.436	INTERGENIC	regulatory region REDfly_CRMs
3R	2676846	3R_2676846_SNP [dm3] 3R_6851124_SNP [dm6]	A	G	1.654e^-4	0.436	INTERGENIC	regulatory region REDfly_CRMs
3R	10157048	3R_10157048_SNP [dm3] 3R_14331326_SNP [dm6]	A	T	1.654e^-4	0.436	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	14809676	3R_14809676_SNP [dm3] 3R_18983954_SNP [dm6]	T	C	1.655e^-4	0.436	UPSTREAM gukh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2R	17530186	2R_17530186_SNP [dm3] 2R_21642681_SNP [dm6]	C	G	1.656e^-4	0.436	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22782498	3R_22782498_SNP [dm3] 3R_26956776_SNP [dm6]	G	A	1.661e^-4	0.436	INTRON CG6330	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
2R	19490843	2R_19490843_SNP [dm3] 2R_23603320_SNP [dm6]	G	A	1.667e^-4	0.437	UPSTREAM CG43209 DOWNSTREAM CG17664 INTRON CG5398	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2313905	X_2313905_SNP [dm3] X_2419872_SNP [dm6]	A	G	1.670e^-4	0.438	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_kn
2L	15206607	2L_15206607_SNP [dm3] 2L_15206607_SNP [dm6]	T	C	1.679e^-4	0.439	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12153175	2L_12153175_SNP [dm3] 2L_12153175_SNP [dm6]	A	G	1.690e^-4	0.441	INTRON CG31760
X	20746481	X_20746481_SNP [dm3] X_20875454_SNP [dm6]	G	C	1.695e^-4	0.441	DOWNSTREAM CR11235 INTRON shakB
3R	20297876	3R_20297876_SNP [dm3] 3R_24472154_SNP [dm6]	C	A	1.698e^-4	0.441	INTERGENIC
3R	537832	3R_537832_SNP [dm3] 3R_4712110_SNP [dm6]	A	G	1.703e^-4	0.441	UTR_3_PRIME CG43427 DOWNSTREAM CG9769 & 1 other	TF binding site mE1_TFBS_kn
2L	1057517	2L_1057517_SNP [dm3] 2L_1057517_SNP [dm6]	T	A	1.707e^-4	0.441	INTRON S	TF binding site mE1_TFBS_sens
2L	11442836	2L_11442836_SNP [dm3] 2L_11442836_SNP [dm6]	G	A	1.708e^-4	0.441	INTRON salm
2R	16171740	2R_16171740_SNP [dm3] 2R_20284235_SNP [dm6]	A	T	1.720e^-4	0.441	INTRON CG16868	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26729549	3R_26729549_SNP [dm3] 3R_30903827_SNP [dm6]	G	A	1.724e^-4	0.441	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22905245	3R_22905245_SNP [dm3] 3R_27079523_SNP [dm6]	A	G	1.725e^-4	0.441	INTRON CG14257	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11443197	2L_11443197_SNP [dm3] 2L_11443197_SNP [dm6]	G	A	1.728e^-4	0.441	INTRON salm
X	13809649	X_13809649_SNP [dm3] X_13915616_SNP [dm6]	T	C	1.736e^-4	0.441	INTRON mamo
3L	505217	3L_505217_SNP [dm3] 3L_505217_SNP [dm6]	G	C	1.737e^-4	0.441	INTRON klar	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc
3R	1626757	3R_1626757_SNP [dm3] 3R_5801035_SNP [dm6]	C	G	1.739e^-4	0.441	INTERGENIC
3R	589213	3R_589213_SNP [dm3] 3R_4763491_SNP [dm6]	A	C	1.739e^-4	0.441	INTRON atms & 1 other
3L	527955	3L_527955_SNP [dm3] 3L_527955_SNP [dm6]	G	A	1.742e^-4	0.441	UPSTREAM CG34269 DOWNSTREAM CR45118 INTRON klar EXON CR45117
X	19659167	X_19659167_SNP [dm3] X_19765134_SNP [dm6]	T	C	1.744e^-4	0.441	UPSTREAM CG12702 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4639412	2L_4639412_SNP [dm3] 2L_4639412_SNP [dm6]	C	A	1.747e^-4	0.441	INTERGENIC
3R	22772315	3R_22772315_SNP [dm3] 3R_26946593_SNP [dm6]	C	T	1.747e^-4	0.441	SYNONYMOUS_CODING CG14252 DOWNSTREAM tRNA:CR31071 & 1 other	TF binding site mE1_TFBS_sens
3R	2074068	3R_2074068_SNP [dm3] 3R_6248346_SNP [dm6]	T	C	1.750e^-4	0.441	UPSTREAM Osi7 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10413988	2R_10413988_SNP [dm3] 2R_14526483_SNP [dm6]	T	A	1.751e^-4	0.441	UTR_5_PRIME ttv UPSTREAM ttv	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3R	13983229	3R_13983229_SNP [dm3] 3R_18157507_SNP [dm6]	C	T	1.752e^-4	0.441	UPSTREAM CR45103 DOWNSTREAM CR45104 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	2061103	3R_2061103_SNP [dm3] 3R_6235381_SNP [dm6]	A	T	1.752e^-4	0.441	INTRON Osi6
3R	7873912	3R_7873912_SNP [dm3] 3R_12048190_SNP [dm6]	G	T	1.755e^-4	0.441	DOWNSTREAM CG14739 INTERGENIC	TF binding site mE1_TFBS_cad
3R	791194	3R_791194_SNP [dm3] 3R_4965472_SNP [dm6]	A	G	1.756e^-4	0.441	UTR_5_PRIME CG1124
3L	1678963	3L_1678963_SNP [dm3] 3L_1678963_SNP [dm6]	A	T	1.761e^-4	0.441	INTRON CG7991
3R	26710146	3R_26710146_SNP [dm3] 3R_30884424_SNP [dm6]	G	A	1.761e^-4	0.441	SYNONYMOUS_CODING Sap-r UPSTREAM CG15547	TF binding site mE1_TFBS_cad
2R	17510699	2R_17510699_SNP [dm3] 2R_21623194_SNP [dm6]	T	C	1.765e^-4	0.441	SYNONYMOUS_CODING PTP-ER	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	17572000	3L_17572000_SNP [dm3] 3L_17578900_SNP [dm6]	T	G	1.765e^-4	0.441	INTRON Eip74EF
3R	26939140	3R_26939140_SNP [dm3] 3R_31113418_SNP [dm6]	C	A	1.770e^-4	0.441	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8329119	2R_8329119_SNP [dm3] 2R_12441614_SNP [dm6]	A	T	1.770e^-4	0.441	UPSTREAM CG30334 INTRON Dyb
3L	8724586	3L_8724586_SNP [dm3] 3L_8731486_SNP [dm6]	T	A	1.771e^-4	0.441	UPSTREAM Cp16 DOWNSTREAM Cp19 INTERGENIC
2R	16825727	2R_16825727_SNP [dm3] 2R_20938222_SNP [dm6]	T	A	1.772e^-4	0.441	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	21530528	3R_21530528_SNP [dm3] 3R_25704806_SNP [dm6]	A	T	1.772e^-4	0.441	INTRON LpR2
2L	7106966	2L_7106966_SNP [dm3] 2L_7106966_SNP [dm6]	T	A	1.775e^-4	0.441	INTRON Pvf3
3R	738892	3R_738892_SNP [dm3] 3R_4913170_SNP [dm6]	G	T	1.777e^-4	0.441	INTRON Cdep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17570706	2R_17570706_SNP [dm3] 2R_21683201_SNP [dm6]	C	G	1.778e^-4	0.441	INTRON CG30263	TF binding site mE1_TFBS_cad
3R	2028917	3R_2028917_SNP [dm3] 3R_6203195_SNP [dm6]	C	T	1.778e^-4	0.441	INTRON Osi24
2R	15753023	2R_15753023_DEL [dm3] 2R_19865518_DEL [dm6]	ACTCC	A	1.780e^-4	0.441	INTRON Obp56i
2L	3164870	2L_3164870_SNP [dm3] 2L_3164870_SNP [dm6]	A	T	1.781e^-4	0.441	INTRON Hydr2
2L	4291227	2L_4291227_SNP [dm3] 2L_4291227_SNP [dm6]	C	T	1.784e^-4	0.441	INTRON tutl
3R	22785804	3R_22785804_SNP [dm3] 3R_26960082_SNP [dm6]	T	A	1.787e^-4	0.441	DOWNSTREAM Tsp97E INTERGENIC
3R	1555513	3R_1555513_SNP [dm3] 3R_5729791_SNP [dm6]	G	T	1.800e^-4	0.441	INTERGENIC	regulatory region REDfly_CRMs
2L	6841609	2L_6841609_SNP [dm3] 2L_6841609_SNP [dm6]	C	G	1.801e^-4	0.441	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3800754	3L_3800754_SNP [dm3] 3L_3800754_SNP [dm6]	T	A	1.803e^-4	0.441	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site mE1_TFBS_cad
3L	8322809	3L_8322809_SNP [dm3] 3L_8329709_SNP [dm6]	C	G	1.803e^-4	0.441	NON_SYNONYMOUS_CODING CG34462
2L	11383570	2L_11383570_SNP [dm3] 2L_11383570_SNP [dm6]	T	G	1.810e^-4	0.441	INTERGENIC	regulatory region REDfly_CRMs
X	7470858	X_7470858_SNP [dm3] X_7576825_SNP [dm6]	G	A	1.810e^-4	0.441	DOWNSTREAM CG11369 INTERGENIC	regulatory region REDfly_CRMs
2R	17340629	2R_17340629_SNP [dm3] 2R_21453124_SNP [dm6]	T	C	1.812e^-4	0.441	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2R	6459340	2R_6459340_SNP [dm3] 2R_10571835_SNP [dm6]	G	A	1.816e^-4	0.441	INTRON psq
3R	26282808	3R_26282808_SNP [dm3] 3R_30457086_SNP [dm6]	T	C	1.818e^-4	0.441	SYNONYMOUS_CODING CG2224
3R	2065459	3R_2065459_SNP [dm3] 3R_6239737_SNP [dm6]	T	A	1.819e^-4	0.441	INTERGENIC
3R	13983259	3R_13983259_SNP [dm3] 3R_18157537_SNP [dm6]	T	A	1.820e^-4	0.441	UPSTREAM CR45103 DOWNSTREAM CR45104 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	3445359	X_3445359_SNP [dm3] X_3551326_SNP [dm6]	T	G	1.820e^-4	0.441	INTRON CG32791
3R	24234831	3R_24234831_SNP [dm3] 3R_28409109_SNP [dm6]	G	A	1.820e^-4	0.441	INTERGENIC
3R	23732945	3R_23732945_SNP [dm3] 3R_27907223_SNP [dm6]	G	T	1.822e^-4	0.441	INTERGENIC
2R	7368113	2R_7368113_SNP [dm3] 2R_11480608_SNP [dm6]	C	G	1.823e^-4	0.441	INTRON inv
3L	8328390	3L_8328390_DEL [dm3] 3L_8335290_DEL [dm6]	TA	T	1.823e^-4	0.441	INTERGENIC
X	2244470	X_2244470_SNP [dm3] X_2350437_SNP [dm6]	G	T	1.823e^-4	0.441	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
3R	25190468	3R_25190468_SNP [dm3] 3R_29364746_SNP [dm6]	G	A	1.825e^-4	0.441	INTERGENIC
3L	13073835	3L_13073835_SNP [dm3] 3L_13080735_SNP [dm6]	T	C	1.827e^-4	0.441	DOWNSTREAM CR43652 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14709086	3R_14709086_SNP [dm3] 3R_18883364_SNP [dm6]	A	G	1.831e^-4	0.441	INTERGENIC
3R	10049486	3R_10049486_SNP [dm3] 3R_14223764_SNP [dm6]	C	G	1.832e^-4	0.441	SYNONYMOUS_CODING Sp212	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6284207	2R_6284207_SNP [dm3] 2R_10396702_SNP [dm6]	C	A	1.836e^-4	0.441	INTRON CG42732
2R	19502711	2R_19502711_MNP [dm3] 2R_23615188_MNP [dm6]	AAA	GCT	1.836e^-4	0.441	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
3R	15001847	3R_15001847_SNP [dm3] 3R_19176125_SNP [dm6]	A	G	1.841e^-4	0.441	UPSTREAM CG14282 INTERGENIC
2L	3749830	2L_3749830_SNP [dm3] 2L_3749830_SNP [dm6]	C	T	1.858e^-4	0.442	SYNONYMOUS_CODING CG10019
3R	2042022	3R_2042022_SNP [dm3] 3R_6216300_SNP [dm6]	C	A	1.867e^-4	0.442	INTRON Osi3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	11452199	2L_11452199_SNP [dm3] 2L_11452199_SNP [dm6]	A	T	1.868e^-4	0.442	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	19187685	3L_19187685_SNP [dm3] 3L_19194585_SNP [dm6]	T	G	1.869e^-4	0.442	INTRON fz2
2R	13509477	2R_13509477_SNP [dm3] 2R_17621972_SNP [dm6]	T	C	1.871e^-4	0.442	INTRON CG10936
X	5507237	X_5507237_SNP [dm3] X_5613204_SNP [dm6]	A	G	1.878e^-4	0.442	DOWNSTREAM Vsx1 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb
3R	1591276	3R_1591276_SNP [dm3] 3R_5765554_SNP [dm6]	A	G	1.881e^-4	0.442	INTRON CG2082
2L	8989513	2L_8989513_SNP [dm3] 2L_8989513_SNP [dm6]	G	C	1.886e^-4	0.442	UTR_5_PRIME rost UPSTREAM rost
2L	4442237	2L_4442237_DEL [dm3] 2L_4442237_DEL [dm6]	ATTTATATTAGAGGTTTTTA...	A	1.887e^-4	0.442	UPSTREAM CG15431 & 2 others DOWNSTREAM morgue INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_h mE1_TFBS_HSA
3L	9557518	3L_9557518_SNP [dm3] 3L_9564418_SNP [dm6]	A	T	1.893e^-4	0.442	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22626378	3R_22626378_SNP [dm3] 3R_26800656_SNP [dm6]	T	A	1.895e^-4	0.442	INTRON Tl	TF binding site BDTNP1_TFBS_twi
3L	12331104	3L_12331104_SNP [dm3] 3L_12338004_SNP [dm6]	C	A	1.896e^-4	0.442	DOWNSTREAM CG10418 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	20825134	3L_20825134_SNP [dm3] 3L_20832034_SNP [dm6]	A	G	1.902e^-4	0.442	INTRON Pka-R1
3R	4550697	3R_4550697_DEL [dm3] 3R_8724975_DEL [dm6]	ATTG	A	1.909e^-4	0.442	UTR_3_PRIME CG8145 UPSTREAM CG11762 DOWNSTREAM CG8145
2L	6581220	2L_6581220_SNP [dm3] 2L_6581220_SNP [dm6]	A	G	1.910e^-4	0.442	INTRON CG11319
3R	22976887	3R_22976887_SNP [dm3] 3R_27151165_SNP [dm6]	G	T	1.912e^-4	0.442	UPSTREAM Men-b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	11454670	2L_11454670_SNP [dm3] 2L_11454670_SNP [dm6]	G	A	1.913e^-4	0.442	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	22782669	3R_22782669_SNP [dm3] 3R_26956947_SNP [dm6]	C	G	1.913e^-4	0.442	INTRON CG6330	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	3278970	3R_3278970_SNP [dm3] 3R_7453248_SNP [dm6]	C	A	1.914e^-4	0.442	INTERGENIC
3R	609134	3R_609134_SNP [dm3] 3R_4783412_SNP [dm6]	T	C	1.915e^-4	0.442	NON_SYNONYMOUS_CODING CG17387	TF binding site mE1_TFBS_cad
2R	20109056	2R_20109056_SNP [dm3] 2R_24221533_SNP [dm6]	C	T	1.916e^-4	0.442	INTRON CG30419
3L	12331105	3L_12331105_SNP [dm3] 3L_12338005_SNP [dm6]	T	A	1.920e^-4	0.442	DOWNSTREAM CG10418 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	2060313	3R_2060313_SNP [dm3] 3R_6234591_SNP [dm6]	G	A	1.923e^-4	0.442	UPSTREAM Osi6 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	2048287	3R_2048287_SNP [dm3] 3R_6222565_SNP [dm6]	C	G	1.927e^-4	0.442	UPSTREAM Osi4 INTERGENIC	TF binding site mE1_TFBS_cad
3R	2676851	3R_2676851_SNP [dm3] 3R_6851129_SNP [dm6]	C	T	1.931e^-4	0.442	INTERGENIC	regulatory region REDfly_CRMs
3R	4578642	3R_4578642_SNP [dm3] 3R_8752920_SNP [dm6]	C	G	1.935e^-4	0.442	NON_SYNONYMOUS_CODING CG8223 START_GAINED CG34135 UTR_5_PRIME CG34135 UTR_3_PRIME CG11768 UPSTREAM CG34135	TF binding site mE1_TFBS_cad
2L	11403899	2L_11403899_SNP [dm3] 2L_11403899_SNP [dm6]	A	G	1.935e^-4	0.442	INTERGENIC	regulatory region REDfly_CRMs
3R	22779410	3R_22779410_SNP [dm3] 3R_26953688_SNP [dm6]	G	C	1.935e^-4	0.442	UPSTREAM CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	11611234	2L_11611234_SNP [dm3] 2L_11611234_SNP [dm6]	T	C	1.938e^-4	0.442	NON_SYNONYMOUS_CODING spag4 INTRON kek2
2R	5421516	2R_5421516_SNP [dm3] 2R_9534011_SNP [dm6]	G	A	1.940e^-4	0.442	SYNONYMOUS_CODING brp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	570979	3R_570979_SNP [dm3] 3R_4745257_SNP [dm6]	T	A	1.941e^-4	0.442	INTRON tacc
2R	15753174	2R_15753174_DEL [dm3] 2R_19865669_DEL [dm6]	GT	G	1.943e^-4	0.442	INTRON Obp56i
2R	15753177	2R_15753177_SNP [dm3] 2R_19865672_SNP [dm6]	A	T	1.943e^-4	0.442	INTRON Obp56i
2R	16926667	2R_16926667_SNP [dm3] 2R_21039162_SNP [dm6]	T	C	1.947e^-4	0.442	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23799635	3R_23799635_SNP [dm3] 3R_27973913_SNP [dm6]	C	T	1.947e^-4	0.442	INTRON betaTub97EF
2R	5588018	2R_5588018_SNP [dm3] 2R_9700513_SNP [dm6]	G	A	1.955e^-4	0.442	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	2061098	3R_2061098_SNP [dm3] 3R_6235376_SNP [dm6]	A	G	1.956e^-4	0.442	INTRON Osi6
2R	19140866	2R_19140866_SNP [dm3] 2R_23253343_SNP [dm6]	A	G	1.960e^-4	0.442	INTERGENIC
3R	1598280	3R_1598280_SNP [dm3] 3R_5772558_SNP [dm6]	A	G	1.962e^-4	0.442	UPSTREAM CG2082 INTRON CG2082	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17589494	2R_17589494_SNP [dm3] 2R_21701989_SNP [dm6]	C	G	1.965e^-4	0.442	UTR_5_PRIME HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3R	19113911	3R_19113911_SNP [dm3] 3R_23288189_SNP [dm6]	G	T	1.967e^-4	0.442	UPSTREAM CG17083 DOWNSTREAM CG4434 INTERGENIC
X	5506735	X_5506735_SNP [dm3] X_5612702_SNP [dm6]	T	G	1.968e^-4	0.442	UTR_3_PRIME Vsx1 DOWNSTREAM Vsx1 & 1 other	TF binding site mE1_TFBS_bab1
2L	785773	2L_785773_SNP [dm3] 2L_785773_SNP [dm6]	T	C	1.970e^-4	0.442	SYNONYMOUS_CODING CG3544 DOWNSTREAM Pkg21D	TF binding site mE1_TFBS_chinmo
3R	26278915	3R_26278915_SNP [dm3] 3R_30453193_SNP [dm6]	G	A	1.974e^-4	0.442	INTRON aralar1
3R	2060312	3R_2060312_SNP [dm3] 3R_6234590_SNP [dm6]	G	A	1.975e^-4	0.442	UPSTREAM Osi6 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	13047585	2L_13047585_SNP [dm3] 2L_13047585_SNP [dm6]	C	G	1.976e^-4	0.442	INTRON CG9932
2L	13047587	2L_13047587_SNP [dm3] 2L_13047587_SNP [dm6]	T	G	1.977e^-4	0.442	INTRON CG9932
X	21043615	X_21043615_SNP [dm3] X_21172588_SNP [dm6]	A	C	1.977e^-4	0.442	INTERGENIC	transposable element FlyBase
2L	7106967	2L_7106967_SNP [dm3] 2L_7106967_SNP [dm6]	C	T	1.978e^-4	0.442	INTRON Pvf3
2L	7106974	2L_7106974_SNP [dm3] 2L_7106974_SNP [dm6]	A	G	1.978e^-4	0.442	INTRON Pvf3
2R	20109340	2R_20109340_SNP [dm3] 2R_24221817_SNP [dm6]	A	G	1.979e^-4	0.442	INTRON CG30419
2R	12270246	2R_12270246_SNP [dm3] 2R_16382741_SNP [dm6]	G	T	1.979e^-4	0.442	UTR_3_PRIME CG43187 DOWNSTREAM CG43187
3R	8621142	3R_8621142_SNP [dm3] 3R_12795420_SNP [dm6]	C	T	1.980e^-4	0.442	INTERGENIC
3L	16756395	3L_16756395_SNP [dm3] 3L_16763295_SNP [dm6]	T	C	1.980e^-4	0.442	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	22976941	3R_22976941_SNP [dm3] 3R_27151219_SNP [dm6]	A	T	1.982e^-4	0.442	UPSTREAM Men-b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	16588075	3R_16588075_SNP [dm3] 3R_20762353_SNP [dm6]	G	C	1.983e^-4	0.442	UTR_5_PRIME CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22781904	3R_22781904_SNP [dm3] 3R_26956182_SNP [dm6]	T	A	1.984e^-4	0.442	INTRON CG6330	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2L	4229467	2L_4229467_SNP [dm3] 2L_4229467_SNP [dm6]	G	T	1.986e^-4	0.442	DOWNSTREAM RpL40 & 1 other INTERGENIC
3R	2069303	3R_2069303_SNP [dm3] 3R_6243581_SNP [dm6]	C	G	1.988e^-4	0.442	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	2038260	3R_2038260_SNP [dm3] 3R_6212538_SNP [dm6]	C	A	1.989e^-4	0.442	INTRON Osi2
3R	19247554	3R_19247554_SNP [dm3] 3R_23421832_SNP [dm6]	G	A	1.990e^-4	0.442	INTRON CG4374
3R	4524015	3R_4524015_SNP [dm3] 3R_8698293_SNP [dm6]	C	T	1.990e^-4	0.442	UPSTREAM hb INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	2064282	3R_2064282_SNP [dm3] 3R_6238560_SNP [dm6]	G	A	1.997e^-4	0.442	INTERGENIC	transposable element FlyBase
3R	13892264	3R_13892264_SNP [dm3] 3R_18066542_SNP [dm6]	T	A	1.998e^-4	0.442	INTERGENIC
3R	10943429	3R_10943429_SNP [dm3] 3R_15117707_SNP [dm6]	C	T	2.006e^-4	0.442	INTRON CG42788
2R	20174567	2R_20174567_SNP [dm3] 2R_24287044_SNP [dm6]	C	T	2.013e^-4	0.442	INTRON nvy	TF binding site mE1_TFBS_chinmo
2L	18238869	2L_18238869_SNP [dm3] 2L_18238869_SNP [dm6]	G	C	2.014e^-4	0.442	INTRON CG42750
3R	2015398	3R_2015398_SNP [dm3] 3R_6189676_SNP [dm6]	C	T	2.018e^-4	0.442	INTRON NPFR	TF binding site mE1_TFBS_inv
3R	2036124	3R_2036124_SNP [dm3] 3R_6210402_SNP [dm6]	C	T	2.018e^-4	0.442	UPSTREAM Osi2 INTRON Osi2
3R	2048900	3R_2048900_SNP [dm3] 3R_6223178_SNP [dm6]	G	A	2.018e^-4	0.442	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2073549	3R_2073549_SNP [dm3] 3R_6247827_SNP [dm6]	G	C	2.018e^-4	0.442	INTERGENIC
2L	1635106	2L_1635106_SNP [dm3] 2L_1635106_SNP [dm6]	A	T	2.019e^-4	0.442	INTERGENIC
3R	21628613	3R_21628613_SNP [dm3] 3R_25802891_SNP [dm6]	T	C	2.023e^-4	0.442	INTERGENIC
3R	7855189	3R_7855189_SNP [dm3] 3R_12029467_SNP [dm6]	A	C	2.026e^-4	0.442	SYNONYMOUS_CODING CG42504 UTR_5_PRIME CG42505 UTR_3_PRIME CG31358 INTRON CG31358
3L	9863281	3L_9863281_SNP [dm3] 3L_9870181_SNP [dm6]	G	C	2.027e^-4	0.442	NON_SYNONYMOUS_CODING CG8108	TF binding site mE1_TFBS_cad
X	2773355	X_2773355_SNP [dm3] X_2879322_SNP [dm6]	C	A	2.029e^-4	0.442	INTRON kirre
3R	4671872	3R_4671872_SNP [dm3] 3R_8846150_SNP [dm6]	A	G	2.031e^-4	0.442	UTR_5_PRIME pyd INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	1685374	3L_1685374_SNP [dm3] 3L_1685374_SNP [dm6]	T	G	2.034e^-4	0.442	INTRON CG7991
2R	17576673	2R_17576673_SNP [dm3] 2R_21689168_SNP [dm6]	A	C	2.035e^-4	0.442	SYNONYMOUS_CODING CG10307 UPSTREAM CG30285	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	16825730	2R_16825730_SNP [dm3] 2R_20938225_SNP [dm6]	C	T	2.037e^-4	0.442	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	13359024	3L_13359024_SNP [dm3] 3L_13365924_SNP [dm6]	A	T	2.038e^-4	0.442	INTERGENIC
3R	26183160	3R_26183160_SNP [dm3] 3R_30357438_SNP [dm6]	T	C	2.039e^-4	0.442	UPSTREAM hdc INTRON hdc
3R	6119265	3R_6119265_SNP [dm3] 3R_10293543_SNP [dm6]	C	A	2.040e^-4	0.442	SYNONYMOUS_CODING CG43143	TF binding site BDTNP1_TFBS_sna
3R	14737792	3R_14737792_SNP [dm3] 3R_18912070_SNP [dm6]	T	C	2.043e^-4	0.442	SYNONYMOUS_CODING CG14291	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7871134	3R_7871134_SNP [dm3] 3R_12045412_SNP [dm6]	A	G	2.044e^-4	0.442	INTERGENIC
3R	20713004	3R_20713004_SNP [dm3] 3R_24887282_SNP [dm6]	T	C	2.049e^-4	0.442	INTRON CG31121	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	559652	3R_559652_SNP [dm3] 3R_4733930_SNP [dm6]	C	T	2.051e^-4	0.442	UTR_3_PRIME tacc DOWNSTREAM tacc
3R	13737434	3R_13737434_SNP [dm3] 3R_17911712_SNP [dm6]	T	C	2.052e^-4	0.442	INTRON Rim & 1 other
3R	4677475	3R_4677475_SNP [dm3] 3R_8851753_SNP [dm6]	A	G	2.053e^-4	0.442	INTRON pyd
2L	8347780	2L_8347780_SNP [dm3] 2L_8347780_SNP [dm6]	G	T	2.055e^-4	0.442	INTRON CG7778
2R	15859063	2R_15859063_SNP [dm3] 2R_19971558_SNP [dm6]	C	T	2.055e^-4	0.442	INTERGENIC
3R	15208270	3R_15208270_SNP [dm3] 3R_19382548_SNP [dm6]	G	C	2.064e^-4	0.442	INTRON Ino80
3R	26183177	3R_26183177_SNP [dm3] 3R_30357455_SNP [dm6]	C	T	2.064e^-4	0.442	UPSTREAM hdc INTRON hdc
2R	5587883	2R_5587883_SNP [dm3] 2R_9700378_SNP [dm6]	A	G	2.068e^-4	0.442	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26707745	3R_26707745_SNP [dm3] 3R_30882023_SNP [dm6]	C	T	2.072e^-4	0.442	UTR_3_PRIME CG15547 UPSTREAM CG12071	TF binding site mE1_TFBS_cad
3R	26151013	3R_26151013_SNP [dm3] 3R_30325291_SNP [dm6]	A	G	2.073e^-4	0.442	INTRON hdc
3R	2076974	3R_2076974_SNP [dm3] 3R_6251252_SNP [dm6]	G	T	2.078e^-4	0.442	UTR_3_PRIME Osi7
3L	10984971	3L_10984971_SNP [dm3] 3L_10991871_SNP [dm6]	T	A	2.079e^-4	0.442	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2349559	2L_2349559_SNP [dm3] 2L_2349559_SNP [dm6]	A	G	2.083e^-4	0.442	INTRON CG9967 & 1 other
2R	20109468	2R_20109468_SNP [dm3] 2R_24221945_SNP [dm6]	A	G	2.086e^-4	0.442	INTRON CG30419
2L	6231276	2L_6231276_SNP [dm3] 2L_6231276_SNP [dm6]	T	C	2.087e^-4	0.442	UPSTREAM CR44823 INTERGENIC
3R	26066489	3R_26066489_SNP [dm3] 3R_30240767_SNP [dm6]	T	C	2.090e^-4	0.442	DOWNSTREAM CG9737 INTERGENIC
X	4547670	X_4547670_SNP [dm3] X_4653637_SNP [dm6]	G	A	2.090e^-4	0.442	SYNONYMOUS_CODING CG15473 INTRON Cbp80	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21575322	3R_21575322_SNP [dm3] 3R_25749600_SNP [dm6]	T	A	2.090e^-4	0.442	INTRON LpR1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8621148	3R_8621148_SNP [dm3] 3R_12795426_SNP [dm6]	C	A	2.092e^-4	0.442	INTERGENIC
2L	938718	2L_938718_SNP [dm3] 2L_938718_SNP [dm6]	T	C	2.098e^-4	0.442	INTRON CG4341
3L	9483138	3L_9483138_SNP [dm3] 3L_9490038_SNP [dm6]	G	A	2.102e^-4	0.442	UTR_3_PRIME CG32037 UPSTREAM CG32036
3R	19951958	3R_19951958_SNP [dm3] 3R_24126236_SNP [dm6]	G	C	2.103e^-4	0.442	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16422335	X_16422335_SNP [dm3] X_16528302_SNP [dm6]	A	C	2.108e^-4	0.442	UPSTREAM para INTRON para
3R	2069190	3R_2069190_SNP [dm3] 3R_6243468_SNP [dm6]	C	T	2.109e^-4	0.442	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6129086	2R_6129086_INS [dm3] 2R_10241581_INS [dm6]	A	ACATATATAAAAGGA...	2.115e^-4	0.442	INTRON Hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22590971	3R_22590971_SNP [dm3] 3R_26765249_SNP [dm6]	C	A	2.115e^-4	0.442	INTERGENIC
3R	23871511	3R_23871511_SNP [dm3] 3R_28045789_SNP [dm6]	G	T	2.118e^-4	0.442	INTRON CG34362
3L	14603019	3L_14603019_DEL [dm3] 3L_14609919_DEL [dm6]	TATAA	T	2.119e^-4	0.442	INTERGENIC
3R	14737012	3R_14737012_SNP [dm3] 3R_18911290_SNP [dm6]	A	G	2.121e^-4	0.442	SYNONYMOUS_CODING CG14291 DOWNSTREAM EndoA	TF binding site mE1_TFBS_cad
2L	1607937	2L_1607937_INS [dm3] 2L_1607937_INS [dm6]	T	TGTAT	2.122e^-4	0.442	UTR_3_PRIME haf INTRON CG31935
3R	10436156	3R_10436156_SNP [dm3] 3R_14610434_SNP [dm6]	C	A	2.122e^-4	0.442	INTRON CG14853
2L	935363	2L_935363_SNP [dm3] 2L_935363_SNP [dm6]	G	T	2.124e^-4	0.442	INTRON CG4341	TF binding site mE1_TFBS_Trl
2L	3542603	2L_3542603_SNP [dm3] 2L_3542603_SNP [dm6]	G	A	2.125e^-4	0.442	INTRON drm	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14033111	3R_14033111_SNP [dm3] 3R_18207389_SNP [dm6]	G	A	2.127e^-4	0.442	INTRON CG7985
X	5498687	X_5498687_INS [dm3] X_5604654_INS [dm6]	T	TATAT	2.127e^-4	0.442	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3R	5733882	3R_5733882_SNP [dm3] 3R_9908160_SNP [dm6]	T	A	2.132e^-4	0.442	INTRON Glut4EF
3L	14603011	3L_14603011_DEL [dm3] 3L_14609911_DEL [dm6]	ATTCAT	A	2.138e^-4	0.442	INTERGENIC
2R	6130093	2R_6130093_SNP [dm3] 2R_10242588_SNP [dm6]	G	A	2.140e^-4	0.442	SPLICE_SITE_REGION Hdc INTRON Hdc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	377543	3R_377543_SNP [dm3] 3R_4551821_SNP [dm6]	C	T	2.142e^-4	0.442	INTRON CG34357	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10425526	3R_10425526_SNP [dm3] 3R_14599804_SNP [dm6]	C	T	2.143e^-4	0.442	INTRON stumps	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6400557	3R_6400557_INS [dm3] 3R_10574835_INS [dm6]	T	TT	2.146e^-4	0.442	INTRON hth
2L	2169759	2L_2169759_SNP [dm3] 2L_2169759_SNP [dm6]	A	T	2.147e^-4	0.442	INTRON aop	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23747464	3R_23747464_SNP [dm3] 3R_27921742_SNP [dm6]	T	C	2.147e^-4	0.442	SYNONYMOUS_CODING BCAS2 UPSTREAM CG12259	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10048717	3L_10048717_SNP [dm3] 3L_10055617_SNP [dm6]	T	A	2.152e^-4	0.442	INTRON dpr6
3L	7120700	3L_7120700_SNP [dm3] 3L_7127600_SNP [dm6]	A	G	2.157e^-4	0.442	SYNONYMOUS_CODING BBS1 DOWNSTREAM CG8629	TF binding site mE1_TFBS_chinmo
3R	24902835	3R_24902835_INS [dm3] 3R_29077113_INS [dm6]	A	AACGAA	2.164e^-4	0.442	INTRON CG11873
X	8097200	X_8097200_SNP [dm3] X_8203167_SNP [dm6]	A	C	2.166e^-4	0.442	INTRON sdt
3R	21541368	3R_21541368_SNP [dm3] 3R_25715646_SNP [dm6]	G	T	2.167e^-4	0.442	INTRON LpR2
2R	17583166	2R_17583166_SNP [dm3] 2R_21695661_SNP [dm6]	G	T	2.167e^-4	0.442	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad
2L	1237237	2L_1237237_SNP [dm3] 2L_1237237_SNP [dm6]	C	T	2.169e^-4	0.442	INTERGENIC
2L	1450951	2L_1450951_SNP [dm3] 2L_1450951_SNP [dm6]	G	T	2.171e^-4	0.442	INTERGENIC
2R	19092463	2R_19092463_SNP [dm3] 2R_23204940_SNP [dm6]	T	G	2.172e^-4	0.442	UPSTREAM CG34371 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	8642177	X_8642177_SNP [dm3] X_8748144_SNP [dm6]	A	C	2.172e^-4	0.442	INTERGENIC
3R	22778637	3R_22778637_SNP [dm3] 3R_26952915_SNP [dm6]	C	T	2.176e^-4	0.442	INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	2045262	3R_2045262_SNP [dm3] 3R_6219540_SNP [dm6]	G	T	2.178e^-4	0.442	INTRON Osi4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18525817	3R_18525817_SNP [dm3] 3R_22700095_SNP [dm6]	A	T	2.179e^-4	0.442	UTR_3_PRIME Cyp6d4 DOWNSTREAM CCAP
3L	19175725	3L_19175725_SNP [dm3] 3L_19182625_SNP [dm6]	G	A	2.183e^-4	0.443	INTRON fz2	TF binding site mE1_TFBS_cad
3R	21577562	3R_21577562_SNP [dm3] 3R_25751840_SNP [dm6]	C	A	2.186e^-4	0.443	INTRON LpR1
3R	1463236	3R_1463236_SNP [dm3] 3R_5637514_SNP [dm6]	C	T	2.188e^-4	0.443	SYNONYMOUS_CODING CG12170 UPSTREAM CG31548	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2319825	X_2319825_SNP [dm3] X_2425792_SNP [dm6]	G	A	2.191e^-4	0.443	UTR_5_PRIME CG32797
3R	548036	3R_548036_SNP [dm3] 3R_4722314_SNP [dm6]	T	A	2.194e^-4	0.443	INTRON Nep2
2R	8462388	2R_8462388_SNP [dm3] 2R_12574883_SNP [dm6]	T	A	2.203e^-4	0.444	DOWNSTREAM Sin3A INTRON ClC-b
3L	16863832	3L_16863832_SNP [dm3] 3L_16870732_SNP [dm6]	A	C	2.204e^-4	0.444	INTRON Lmpt
3R	26283956	3R_26283956_SNP [dm3] 3R_30458234_SNP [dm6]	T	A	2.207e^-4	0.444	INTRON CG2224	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15640609	3R_15640609_SNP [dm3] 3R_19814887_SNP [dm6]	T	A	2.213e^-4	0.444	INTRON bnl
3L	12329217	3L_12329217_DEL [dm3] 3L_12336117_DEL [dm6]	TTATT	T	2.214e^-4	0.444	UPSTREAM CG10418 DOWNSTREAM CG32105 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22785341	3R_22785341_SNP [dm3] 3R_26959619_SNP [dm6]	T	C	2.215e^-4	0.444	INTERGENIC
2L	4950176	2L_4950176_SNP [dm3] 2L_4950176_SNP [dm6]	G	A	2.227e^-4	0.445	SYNONYMOUS_CODING Jon25Biii UPSTREAM jet	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13437368	2L_13437368_SNP [dm3] 2L_13437368_SNP [dm6]	A	G	2.227e^-4	0.445	DOWNSTREAM CR45683 INTRON CG42784 & 1 other
3R	23778544	3R_23778544_SNP [dm3] 3R_27952822_SNP [dm6]	C	T	2.228e^-4	0.445	SYNONYMOUS_CODING CG4951 DOWNSTREAM Gp93	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14295019	3R_14295019_SNP [dm3] 3R_18469297_SNP [dm6]	C	G	2.229e^-4	0.445	INTRON fru
3L	10048839	3L_10048839_SNP [dm3] 3L_10055739_SNP [dm6]	T	C	2.240e^-4	0.446	INTRON dpr6
3R	460293	3R_460293_SNP [dm3] 3R_4634571_SNP [dm6]	T	C	2.241e^-4	0.446	UPSTREAM CR45673 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19407793	2R_19407793_SNP [dm3] 2R_23520270_SNP [dm6]	C	T	2.243e^-4	0.446	UTR_3_PRIME RabX1
3R	6400553	3R_6400553_SNP [dm3] 3R_10574831_SNP [dm6]	C	T	2.244e^-4	0.446	INTRON hth
3R	7871943	3R_7871943_SNP [dm3] 3R_12046221_SNP [dm6]	G	A	2.244e^-4	0.446	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22510012	3R_22510012_SNP [dm3] 3R_26684290_SNP [dm6]	G	C	2.247e^-4	0.446	INTERGENIC
3R	561795	3R_561795_DEL [dm3] 3R_4736073_DEL [dm6]	ATT	A	2.259e^-4	0.448	INTRON tacc
3R	15047944	3R_15047944_SNP [dm3] 3R_19222222_SNP [dm6]	C	A	2.265e^-4	0.448	INTRON vib
2L	1786467	2L_1786467_INS [dm3] 2L_1786467_INS [dm6]	A	GCG	2.266e^-4	0.448	INTERGENIC
2R	17581951	2R_17581951_SNP [dm3] 2R_21694446_SNP [dm6]	T	C	2.267e^-4	0.448	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad
3R	23849405	3R_23849405_SNP [dm3] 3R_28023683_SNP [dm6]	A	T	2.271e^-4	0.448	INTERGENIC
3L	973750	3L_973750_SNP [dm3] 3L_973750_SNP [dm6]	G	C	2.276e^-4	0.448	INTRON Glut1	TF binding site mE1_TFBS_Trl
3R	4610521	3R_4610521_SNP [dm3] 3R_8784799_SNP [dm6]	G	A	2.278e^-4	0.448	UPSTREAM Pif1A INTRON Pif1B & 1 other	TF binding site mE1_TFBS_cad
3R	502668	3R_502668_SNP [dm3] 3R_4676946_SNP [dm6]	G	A	2.279e^-4	0.448	INTRON CG43427
2L	13712572	2L_13712572_SNP [dm3] 2L_13712572_SNP [dm6]	A	C	2.284e^-4	0.448	INTRON CG31814
3R	1626612	3R_1626612_SNP [dm3] 3R_5800890_SNP [dm6]	C	T	2.290e^-4	0.448	DOWNSTREAM CG10979 INTERGENIC
3L	10195250	3L_10195250_SNP [dm3] 3L_10202150_SNP [dm6]	A	G	2.292e^-4	0.448	UPSTREAM ect INTERGENIC
3R	511774	3R_511774_SNP [dm3] 3R_4686052_SNP [dm6]	T	C	2.295e^-4	0.448	INTRON CG43427	TF binding site mE1_TFBS_cad
3R	6283293	3R_6283293_SNP [dm3] 3R_10457571_SNP [dm6]	T	A	2.296e^-4	0.448	INTERGENIC
3R	22782538	3R_22782538_SNP [dm3] 3R_26956816_SNP [dm6]	A	T	2.297e^-4	0.448	INTRON CG6330	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
3L	20860803	3L_20860803_SNP [dm3] 3L_20867703_SNP [dm6]	G	T	2.303e^-4	0.448	INTRON CG32432
3R	7878798	3R_7878798_SNP [dm3] 3R_12053076_SNP [dm6]	A	G	2.307e^-4	0.448	INTERGENIC
3R	22777924	3R_22777924_SNP [dm3] 3R_26952202_SNP [dm6]	C	T	2.307e^-4	0.448	INTRON CG6330	TF binding site BDTNP1_TFBS_da
2R	3565737	2R_3565737_SNP [dm3] 2R_7678232_SNP [dm6]	T	C	2.316e^-4	0.448	SYNONYMOUS_CODING CG1399 INTRON CG1399
3R	1599897	3R_1599897_SNP [dm3] 3R_5774175_SNP [dm6]	C	T	2.321e^-4	0.448	INTRON CG2082
3R	1634057	3R_1634057_SNP [dm3] 3R_5808335_SNP [dm6]	G	A	2.321e^-4	0.448	UTR_3_PRIME CG11000
3R	1604191	3R_1604191_SNP [dm3] 3R_5778469_SNP [dm6]	T	G	2.328e^-4	0.448	UPSTREAM CG2082 & 1 other INTRON CG2082	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12079502	3L_12079502_SNP [dm3] 3L_12086402_SNP [dm6]	A	G	2.329e^-4	0.448	INTERGENIC
3R	748217	3R_748217_SNP [dm3] 3R_4922495_SNP [dm6]	A	T	2.330e^-4	0.448	INTRON Cdep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1687985	3R_1687985_SNP [dm3] 3R_5862263_SNP [dm6]	C	T	2.332e^-4	0.448	SYNONYMOUS_CODING CG2017 UPSTREAM CG2017 DOWNSTREAM CG34113 INTRON CG2017	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	1703006	3R_1703006_SNP [dm3] 3R_5877284_SNP [dm6]	C	T	2.332e^-4	0.448	SYNONYMOUS_CODING CG34113 INTRON CG34113	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17571817	3L_17571817_SNP [dm3] 3L_17578717_SNP [dm6]	T	C	2.332e^-4	0.448	INTRON Eip74EF
2L	4314198	2L_4314198_DEL [dm3] 2L_4314198_DEL [dm6]	AC	T	2.334e^-4	0.448	SPLICE_SITE_REGION tutl INTRON tutl
3R	22782878	3R_22782878_SNP [dm3] 3R_26957156_SNP [dm6]	G	T	2.342e^-4	0.448	INTRON CG6330	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	1615923	3R_1615923_SNP [dm3] 3R_5790201_SNP [dm6]	G	T	2.345e^-4	0.448	SYNONYMOUS_CODING Rpn5 UPSTREAM CG2051	TF binding site mE1_TFBS_cnc mE1_TFBS_sens
3R	1582554	3R_1582554_SNP [dm3] 3R_5756832_SNP [dm6]	C	A	2.345e^-4	0.448	NON_SYNONYMOUS_CODING Sec8
3R	4507145	3R_4507145_SNP [dm3] 3R_8681423_SNP [dm6]	G	T	2.350e^-4	0.448	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	26283969	3R_26283969_SNP [dm3] 3R_30458247_SNP [dm6]	C	T	2.351e^-4	0.448	INTRON CG2224	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1586179	3R_1586179_SNP [dm3] 3R_5760457_SNP [dm6]	G	T	2.355e^-4	0.448	DOWNSTREAM CG2082 INTRON CG2082	TF binding site mE1_TFBS_HSA
3R	1566379	3R_1566379_SNP [dm3] 3R_5740657_SNP [dm6]	T	A	2.358e^-4	0.448	NON_SYNONYMOUS_CODING Sym	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11911286	3L_11911286_SNP [dm3] 3L_11918186_SNP [dm6]	G	A	2.366e^-4	0.448	INTRON CG44837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	6615280	2L_6615280_SNP [dm3] 2L_6615280_SNP [dm6]	A	T	2.367e^-4	0.448	INTRON CG11050
3R	11255718	3R_11255718_SNP [dm3] 3R_15429996_SNP [dm6]	G	T	2.368e^-4	0.448	INTRON CG6118
3R	7865701	3R_7865701_SNP [dm3] 3R_12039979_SNP [dm6]	C	T	2.371e^-4	0.448	UPSTREAM CG14736 INTERGENIC
3R	10517724	3R_10517724_SNP [dm3] 3R_14692002_SNP [dm6]	G	A	2.374e^-4	0.448	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
3R	3231511	3R_3231511_SNP [dm3] 3R_7405789_SNP [dm6]	G	A	2.380e^-4	0.448	INTERGENIC
3L	1028179	3L_1028179_SNP [dm3] 3L_1028179_SNP [dm6]	T	A	2.385e^-4	0.448	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	3436125	3R_3436125_INS [dm3] 3R_7610403_INS [dm6]	G	GC	2.386e^-4	0.448	INTRON CG34127
3R	7871940	3R_7871940_SNP [dm3] 3R_12046218_SNP [dm6]	C	A	2.387e^-4	0.448	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18888461	3L_18888461_SNP [dm3] 3L_18895361_SNP [dm6]	G	T	2.387e^-4	0.448	DOWNSTREAM snoRNA:Psi28S-2566 INTRON CG3902
3R	22283728	3R_22283728_SNP [dm3] 3R_26458006_SNP [dm6]	A	C	2.389e^-4	0.448	UPSTREAM CG14238 DOWNSTREAM CG14237 INTERGENIC
3R	6390642	3R_6390642_SNP [dm3] 3R_10564920_SNP [dm6]	A	G	2.399e^-4	0.448	INTRON hth	TF binding site mE1_TFBS_HSA
3R	1610574	3R_1610574_SNP [dm3] 3R_5784852_SNP [dm6]	C	A	2.400e^-4	0.448	INTRON kat-60L1
3R	1719700	3R_1719700_SNP [dm3] 3R_5893978_SNP [dm6]	C	T	2.401e^-4	0.448	INTRON CG34113
3R	1591493	3R_1591493_SNP [dm3] 3R_5765771_SNP [dm6]	T	G	2.403e^-4	0.448	INTRON CG2082
3R	4514626	3R_4514626_SNP [dm3] 3R_8688904_SNP [dm6]	C	G	2.404e^-4	0.448	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3599036	2R_3599036_SNP [dm3] 2R_7711531_SNP [dm6]	T	G	2.405e^-4	0.448	SYNONYMOUS_CODING CG1941 DOWNSTREAM mir-4909
3R	23871513	3R_23871513_SNP [dm3] 3R_28045791_SNP [dm6]	G	A	2.407e^-4	0.448	INTRON CG34362
2R	4107682	2R_4107682_SNP [dm3] 2R_8220177_SNP [dm6]	C	A	2.408e^-4	0.448	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7373651	2L_7373651_DEL [dm3] 2L_7373651_DEL [dm6]	GAGATCGGG	G	2.409e^-4	0.448	INTRON Wnt10	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13854094	2R_13854094_DEL [dm3] 2R_17966589_DEL [dm6]	CACC	C	2.410e^-4	0.448	INTERGENIC

By genomic position
Variant impact
Gene name

middleLength phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results