DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.563e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1799 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	21280862	X_21280862_INS [dm3] X_21409835_INS [dm6]	G	GG	2.825e^-7	0.53	EXON CR45003
2L	777869	2L_777869_SNP [dm3] 2L_777869_SNP [dm6]	C	T	1.993e^-6	0.735	DOWNSTREAM CG13946 INTERGENIC
2R	17280566	2R_17280566_SNP [dm3] 2R_21393061_SNP [dm6]	T	A	2.026e^-6	0.735	UTR_3_PRIME Sdc DOWNSTREAM Acox57D-d & 1 other
3R	10171644	3R_10171644_SNP [dm3] 3R_14345922_SNP [dm6]	C	A	2.580e^-6	0.735	INTRON NK7.1
X	21280854	X_21280854_SNP [dm3] X_21409827_SNP [dm6]	T	C	3.107e^-6	0.735	EXON CR45003
X	22055432	X_22055432_SNP [dm3] X_22653596_SNP [dm6]	C	G	3.390e^-6	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21280957	X_21280957_SNP [dm3] X_21409930_SNP [dm6]	T	C	3.695e^-6	0.735	SPLICE_SITE_REGION CR45003 EXON CR45003
X	14757015	X_14757015_SNP [dm3] X_14862982_SNP [dm6]	T	C	4.745e^-6	0.735	DOWNSTREAM CG9518 INTRON Flo2
X	14757014	X_14757014_SNP [dm3] X_14862981_SNP [dm6]	T	G	4.766e^-6	0.735	DOWNSTREAM CG9518 INTRON Flo2
X	21282846	X_21282846_SNP [dm3] X_21411819_SNP [dm6]	G	C	4.770e^-6	0.735	INTERGENIC
3L	2083804	3L_2083804_SNP [dm3] 3L_2083804_SNP [dm6]	C	T	5.307e^-6	0.735	NON_SYNONYMOUS_CODING sls INTRON sls
3R	20493348	3R_20493348_SNP [dm3] 3R_24667626_SNP [dm6]	C	T	5.403e^-6	0.735	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
3L	13620160	3L_13620160_SNP [dm3] 3L_13627060_SNP [dm6]	A	G	5.726e^-6	0.735	INTRON bru-3	TF binding site mE1_TFBS_chinmo
X	12509390	X_12509390_SNP [dm3] X_12615357_SNP [dm6]	G	C	6.273e^-6	0.735	UTR_3_PRIME CG2543 UPSTREAM CG11085 INTRON CR45621	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	5649544	2R_5649544_SNP [dm3] 2R_9762039_SNP [dm6]	T	C	6.534e^-6	0.735	SPLICE_SITE_REGION trpl INTRON trpl	TF binding site mE1_TFBS_cad
2L	12281930	2L_12281930_SNP [dm3] 2L_12281930_SNP [dm6]	T	C	6.667e^-6	0.735	INTRON aret
X	14756804	X_14756804_SNP [dm3] X_14862771_SNP [dm6]	C	A	6.892e^-6	0.735	DOWNSTREAM CG9518 INTRON Flo2
X	12509392	X_12509392_SNP [dm3] X_12615359_SNP [dm6]	A	G	7.056e^-6	0.735	UTR_3_PRIME CG2543 UPSTREAM CG11085 INTRON CR45621	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	16425755	3R_16425755_SNP [dm3] 3R_20600033_SNP [dm6]	C	T	7.788e^-6	0.769	INTRON bon
3L	2434573	3L_2434573_SNP [dm3] 3L_2434573_SNP [dm6]	T	C	9.047e^-6	0.805	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12509678	X_12509678_SNP [dm3] X_12615645_SNP [dm6]	A	C	9.338e^-6	0.805	UPSTREAM CG11085 DOWNSTREAM CG2543 EXON CR45621	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	1822706	X_1822706_SNP [dm3] X_1928673_SNP [dm6]	T	A	1.002e^-5	0.805	INTRON CG11596	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18866607	3L_18866607_SNP [dm3] 3L_18873507_SNP [dm6]	G	A	1.024e^-5	0.805	SYNONYMOUS_CODING Ugt UPSTREAM Rad9	TF binding site mE1_TFBS_sens
2R	4017765	2R_4017765_SNP [dm3] 2R_8130260_SNP [dm6]	C	A	1.030e^-5	0.805	SYNONYMOUS_CODING Pbp49 UTR_3_PRIME CG42516 DOWNSTREAM Socs44A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18866634	3L_18866634_SNP [dm3] 3L_18873534_SNP [dm6]	T	C	1.190e^-5	0.843	SYNONYMOUS_CODING Ugt UPSTREAM Rad9	TF binding site mE1_TFBS_sens
2R	12483337	2R_12483337_SNP [dm3] 2R_16595832_SNP [dm6]	A	G	1.196e^-5	0.843	SYNONYMOUS_CODING CG8303	TF binding site mE1_TFBS_sens
3L	18866643	3L_18866643_SNP [dm3] 3L_18873543_SNP [dm6]	C	T	1.218e^-5	0.843	SYNONYMOUS_CODING Ugt UPSTREAM Rad9	TF binding site mE1_TFBS_sens
X	22055445	X_22055445_SNP [dm3] X_22653609_SNP [dm6]	A	T	1.302e^-5	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18866625	3L_18866625_SNP [dm3] 3L_18873525_SNP [dm6]	T	C	1.344e^-5	0.843	SYNONYMOUS_CODING Ugt UPSTREAM Rad9	TF binding site mE1_TFBS_sens
2L	4306167	2L_4306167_SNP [dm3] 2L_4306167_SNP [dm6]	A	G	1.417e^-5	0.843	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_chinmo
X	8714909	X_8714909_DEL [dm3] X_8820876_DEL [dm6]	CC	C	1.490e^-5	0.843	INTERGENIC
X	21280848	X_21280848_SNP [dm3] X_21409821_SNP [dm6]	G	A	1.563e^-5	0.843	EXON CR45003
X	2338456	X_2338456_SNP [dm3] X_2444423_SNP [dm6]	C	A	1.613e^-5	0.843	UTR_3_PRIME boi UPSTREAM tko	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3R	16880183	3R_16880183_SNP [dm3] 3R_21054461_SNP [dm6]	A	G	1.634e^-5	0.843	DOWNSTREAM Mvl INTRON Mvl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23003397	3R_23003397_SNP [dm3] 3R_27177675_SNP [dm6]	C	A	1.666e^-5	0.843	INTRON Ser	TF binding site mE1_TFBS_cad
3L	18866287	3L_18866287_SNP [dm3] 3L_18873187_SNP [dm6]	T	A	1.694e^-5	0.843	UPSTREAM Rad9 INTRON Ugt
X	21280814	X_21280814_SNP [dm3] X_21409787_SNP [dm6]	A	G	1.741e^-5	0.843	EXON CR45003
3R	17943965	3R_17943965_SNP [dm3] 3R_22118243_SNP [dm6]	G	A	1.781e^-5	0.843	SYNONYMOUS_CODING Ir94c UPSTREAM Ir94b
3R	2666092	3R_2666092_SNP [dm3] 3R_6840370_SNP [dm6]	C	G	1.842e^-5	0.843	INTRON Scr
3L	2090326	3L_2090326_SNP [dm3] 3L_2090326_SNP [dm6]	A	C	1.850e^-5	0.843	UTR_3_PRIME sls DOWNSTREAM sls & 1 other INTRON sls	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	18868479	3L_18868479_SNP [dm3] 3L_18875379_SNP [dm6]	C	G	1.908e^-5	0.843	SYNONYMOUS_CODING Ugt	TF binding site mE1_TFBS_sens
3R	7875836	3R_7875836_SNP [dm3] 3R_12050114_SNP [dm6]	C	A	1.931e^-5	0.843	UPSTREAM CG14739 INTERGENIC
2R	10022329	2R_10022329_SNP [dm3] 2R_14134824_SNP [dm6]	G	A	1.989e^-5	0.843	INTRON Prosap
2R	3493904	2R_3493904_SNP [dm3] 2R_7606399_SNP [dm6]	A	G	2.020e^-5	0.843	INTRON CG1358	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21281000	X_21281000_SNP [dm3] X_21409973_SNP [dm6]	A	G	2.023e^-5	0.843	INTRON CR45003
3L	2105746	3L_2105746_SNP [dm3] 3L_2105746_SNP [dm6]	A	G	2.085e^-5	0.843	SYNONYMOUS_CODING sls	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23003428	3R_23003428_SNP [dm3] 3R_27177706_SNP [dm6]	A	C	2.111e^-5	0.843	INTRON Ser	TF binding site mE1_TFBS_cad
2L	4306168	2L_4306168_SNP [dm3] 2L_4306168_SNP [dm6]	G	C	2.186e^-5	0.849	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_chinmo
X	1834381	X_1834381_SNP [dm3] X_1940348_SNP [dm6]	A	G	2.218e^-5	0.849	UTR_5_PRIME CG3587 UPSTREAM CG3857	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
3L	2226141	3L_2226141_SNP [dm3] 3L_2226141_SNP [dm6]	A	G	2.461e^-5	0.911	INTERGENIC
2L	14695550	2L_14695550_SNP [dm3] 2L_14695550_SNP [dm6]	T	C	2.533e^-5	0.911	INTERGENIC
2R	3494115	2R_3494115_SNP [dm3] 2R_7606610_SNP [dm6]	T	G	2.572e^-5	0.911	INTRON CG1358	TF binding site BDTNP1_TFBS_twi
2L	16955833	2L_16955833_SNP [dm3] 2L_16955833_SNP [dm6]	T	G	2.627e^-5	0.911	INTERGENIC
X	16766781	X_16766781_SNP [dm3] X_16872748_SNP [dm6]	C	T	2.639e^-5	0.911	INTRON CG13003
X	4475320	X_4475320_SNP [dm3] X_4581287_SNP [dm6]	C	T	2.726e^-5	0.911	INTRON CR32773
X	6640250	X_6640250_DEL [dm3] X_6746217_DEL [dm6]	CTAC	C	2.798e^-5	0.911	DOWNSTREAM CR44964 EXON CR44895
2R	3747357	2R_3747357_SNP [dm3] 2R_7859852_SNP [dm6]	T	C	2.813e^-5	0.911	INTRON Dgk	TF binding site mE1_TFBS_cad
3R	23799951	3R_23799951_SNP [dm3] 3R_27974229_SNP [dm6]	C	G	2.835e^-5	0.911	SYNONYMOUS_CODING betaTub97EF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17943956	3R_17943956_SNP [dm3] 3R_22118234_SNP [dm6]	C	T	2.889e^-5	0.911	SYNONYMOUS_CODING Ir94c UPSTREAM Ir94b
X	11659510	X_11659510_SNP [dm3] X_11765477_SNP [dm6]	C	G	2.939e^-5	0.911	UPSTREAM CG9360 INTRON m	TF binding site mE1_TFBS_cnc
X	7466250	X_7466250_INS [dm3] X_7572217_INS [dm6]	T	TT	2.963e^-5	0.911	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	7647508	3L_7647508_SNP [dm3] 3L_7654408_SNP [dm6]	T	A	3.094e^-5	0.926	UTR_5_PRIME CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	23003425	3R_23003425_SNP [dm3] 3R_27177703_SNP [dm6]	T	C	3.158e^-5	0.926	INTRON Ser	TF binding site mE1_TFBS_cad
3R	23688673	3R_23688673_SNP [dm3] 3R_27862951_SNP [dm6]	C	T	3.288e^-5	0.926	INTRON CG34353
3R	23688694	3R_23688694_DEL [dm3] 3R_27862972_DEL [dm6]	CA	C	3.288e^-5	0.926	INTRON CG34353
3R	23688714	3R_23688714_SNP [dm3] 3R_27862992_SNP [dm6]	A	T	3.288e^-5	0.926	INTRON CG34353
2L	2293607	2L_2293607_SNP [dm3] 2L_2293607_SNP [dm6]	T	A	3.307e^-5	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	15390080	3L_15390080_SNP [dm3] 3L_15396980_SNP [dm6]	C	T	3.462e^-5	0.929	INTERGENIC
3R	10409395	3R_10409395_SNP [dm3] 3R_14583673_SNP [dm6]	T	C	3.514e^-5	0.929	INTRON stumps
3L	9298923	3L_9298923_SNP [dm3] 3L_9305823_SNP [dm6]	G	A	3.671e^-5	0.929	INTERGENIC
3L	2083833	3L_2083833_SNP [dm3] 3L_2083833_SNP [dm6]	T	C	3.696e^-5	0.929	NON_SYNONYMOUS_CODING sls INTRON sls
X	12509614	X_12509614_INS [dm3] X_12615581_INS [dm6]	T	TATTGCACA	3.702e^-5	0.929	UPSTREAM CG11085 DOWNSTREAM CG2543 INTRON CR45621	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	17941991	3R_17941991_SNP [dm3] 3R_22116269_SNP [dm6]	A	G	3.774e^-5	0.929	SYNONYMOUS_CODING Ir94b
2L	3324493	2L_3324493_SNP [dm3] 2L_3324493_SNP [dm6]	C	G	3.779e^-5	0.929	INTRON CG33281
X	12509469	X_12509469_SNP [dm3] X_12615436_SNP [dm6]	A	T	3.782e^-5	0.929	UTR_3_PRIME CG2543 UPSTREAM CG11085 INTRON CR45621	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	9297951	3L_9297951_SNP [dm3] 3L_9304851_SNP [dm6]	C	T	3.788e^-5	0.929	INTERGENIC
3R	20493467	3R_20493467_SNP [dm3] 3R_24667745_SNP [dm6]	G	C	3.866e^-5	0.929	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
X	12509619	X_12509619_SNP [dm3] X_12615586_SNP [dm6]	G	T	3.935e^-5	0.929	UPSTREAM CG11085 DOWNSTREAM CG2543 INTRON CR45621	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	2121473	3L_2121473_SNP [dm3] 3L_2121473_SNP [dm6]	G	A	3.941e^-5	0.929	INTRON zormin	TF binding site BDTNP1_TFBS_twi
X	22055528	X_22055528_SNP [dm3] X_22653692_SNP [dm6]	G	A	4.131e^-5	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8390445	2L_8390445_SNP [dm3] 2L_8390445_SNP [dm6]	A	G	4.156e^-5	0.929	SYNONYMOUS_CODING CG42820 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7875831	3R_7875831_SNP [dm3] 3R_12050109_SNP [dm6]	C	T	4.248e^-5	0.929	UPSTREAM CG14739 INTERGENIC
3R	7876536	3R_7876536_SNP [dm3] 3R_12050814_SNP [dm6]	A	G	4.255e^-5	0.929	INTERGENIC
X	12282071	X_12282071_SNP [dm3] X_12388038_SNP [dm6]	A	G	4.316e^-5	0.929	INTERGENIC
3R	3344790	3R_3344790_SNP [dm3] 3R_7519068_SNP [dm6]	G	C	4.349e^-5	0.929	SYNONYMOUS_CODING Ubc84D DOWNSTREAM alpha-Est7
2L	2293416	2L_2293416_SNP [dm3] 2L_2293416_SNP [dm6]	G	C	4.354e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	13966671	2R_13966671_DEL [dm3] 2R_18079166_DEL [dm6]	TTCT	A	4.398e^-5	0.929	INTRON CG34386
3L	3907783	3L_3907783_DEL [dm3] 3L_3907783_DEL [dm6]	TT	T	4.399e^-5	0.929	UTR_3_PRIME ida DOWNSTREAM mge
3L	2121463	3L_2121463_SNP [dm3] 3L_2121463_SNP [dm6]	G	T	4.459e^-5	0.929	INTRON zormin	TF binding site BDTNP1_TFBS_twi
3R	24103813	3R_24103813_SNP [dm3] 3R_28278091_SNP [dm6]	G	T	4.540e^-5	0.929	INTERGENIC
2L	18418090	2L_18418090_SNP [dm3] 2L_18418090_SNP [dm6]	A	G	4.740e^-5	0.929	INTERGENIC
2L	7373651	2L_7373651_DEL [dm3] 2L_7373651_DEL [dm6]	GAGATCGGG	G	4.770e^-5	0.929	INTRON Wnt10	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20970980	3R_20970980_SNP [dm3] 3R_25145258_SNP [dm6]	C	A	4.823e^-5	0.929	INTERGENIC
3R	26169789	3R_26169789_SNP [dm3] 3R_30344067_SNP [dm6]	A	T	4.939e^-5	0.929	INTRON hdc	TF binding site BDTNP1_TFBS_dl
2L	2286527	2L_2286527_SNP [dm3] 2L_2286527_SNP [dm6]	G	A	4.988e^-5	0.929	SYNONYMOUS_CODING CG31681 DOWNSTREAM CG4271 & 1 other
2L	15205484	2L_15205484_SNP [dm3] 2L_15205484_SNP [dm6]	G	A	4.991e^-5	0.929	INTERGENIC
3L	15391612	3L_15391612_SNP [dm3] 3L_15398512_SNP [dm6]	A	G	5.062e^-5	0.929	INTERGENIC
3R	20938571	3R_20938571_SNP [dm3] 3R_25112849_SNP [dm6]	A	C	5.133e^-5	0.929	UPSTREAM CG13650 DOWNSTREAM CG31108 INTERGENIC
3L	3903514	3L_3903514_SNP [dm3] 3L_3903514_SNP [dm6]	A	G	5.138e^-5	0.929	UTR_5_PRIME Sc2 UPSTREAM Ubi-p63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3R	26169735	3R_26169735_SNP [dm3] 3R_30344013_SNP [dm6]	C	G	5.209e^-5	0.929	INTRON hdc	TF binding site BDTNP1_TFBS_dl
2L	2293276	2L_2293276_SNP [dm3] 2L_2293276_SNP [dm6]	C	T	5.222e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	4509475	2R_4509475_SNP [dm3] 2R_8621970_SNP [dm6]	G	A	5.243e^-5	0.929	SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6639918	X_6639918_SNP [dm3] X_6745885_SNP [dm6]	T	C	5.321e^-5	0.929	DOWNSTREAM CR44964 EXON CR44895
X	12509474	X_12509474_SNP [dm3] X_12615441_SNP [dm6]	A	G	5.337e^-5	0.929	UTR_3_PRIME CG2543 UPSTREAM CG11085 INTRON CR45621	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	1843795	X_1843795_SNP [dm3] X_1949762_SNP [dm6]	G	C	5.358e^-5	0.929	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23003416	3R_23003416_DEL [dm3] 3R_27177694_DEL [dm6]	ATA	A	5.397e^-5	0.929	INTRON Ser	TF binding site mE1_TFBS_cad
3R	23003431	3R_23003431_SNP [dm3] 3R_27177709_SNP [dm6]	T	G	5.397e^-5	0.929	INTRON Ser	TF binding site mE1_TFBS_cad
3R	24973542	3R_24973542_SNP [dm3] 3R_29147820_SNP [dm6]	C	T	5.478e^-5	0.929	SYNONYMOUS_CODING CG11882 UPSTREAM CG14511 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	2603700	3L_2603700_SNP [dm3] 3L_2603700_SNP [dm6]	A	T	5.488e^-5	0.929	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26169857	3R_26169857_INS [dm3] 3R_30344135_INS [dm6]	G	GG	5.571e^-5	0.929	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	17492969	2L_17492969_SNP [dm3] 2L_17492969_SNP [dm6]	T	C	5.585e^-5	0.929	UPSTREAM qua INTRON qua
2L	2293040	2L_2293040_SNP [dm3] 2L_2293040_SNP [dm6]	G	A	5.590e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	20403695	3R_20403695_SNP [dm3] 3R_24577973_SNP [dm6]	A	G	5.634e^-5	0.929	UPSTREAM CG13624 INTRON CG13624
3L	6113397	3L_6113397_SNP [dm3] 3L_6120297_SNP [dm6]	C	A	5.699e^-5	0.929	INTRON Ets65A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16549085	2R_16549085_SNP [dm3] 2R_20661580_SNP [dm6]	C	G	5.724e^-5	0.929	UPSTREAM CG13437 DOWNSTREAM Lrt & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	18788191	3R_18788191_SNP [dm3] 3R_22962469_SNP [dm6]	A	G	5.776e^-5	0.929	DOWNSTREAM klg INTERGENIC
3L	11958210	3L_11958210_SNP [dm3] 3L_11965110_SNP [dm6]	G	A	5.797e^-5	0.929	NON_SYNONYMOUS_CODING prc
3L	8305872	3L_8305872_SNP [dm3] 3L_8312772_SNP [dm6]	A	T	5.939e^-5	0.93	INTRON CG7185	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7498096	2L_7498096_SNP [dm3] 2L_7498096_SNP [dm6]	A	T	6.032e^-5	0.93	UTR_3_PRIME RapGAP1 UPSTREAM Obp28a
3L	9297981	3L_9297981_SNP [dm3] 3L_9304881_SNP [dm6]	A	G	6.103e^-5	0.93	INTERGENIC
2L	16363240	2L_16363240_SNP [dm3] 2L_16363240_SNP [dm6]	C	T	6.154e^-5	0.93	INTERGENIC
3R	22777924	3R_22777924_SNP [dm3] 3R_26952202_SNP [dm6]	C	T	6.190e^-5	0.93	INTRON CG6330	TF binding site BDTNP1_TFBS_da
X	12021505	X_12021505_SNP [dm3] X_12127472_SNP [dm6]	T	A	6.198e^-5	0.93	UPSTREAM Ten-a INTRON Ten-a
3R	20413322	3R_20413322_SNP [dm3] 3R_24587600_SNP [dm6]	A	G	6.228e^-5	0.93	INTRON mld	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20970805	3R_20970805_SNP [dm3] 3R_25145083_SNP [dm6]	A	G	6.289e^-5	0.93	INTERGENIC
2L	8887165	2L_8887165_SNP [dm3] 2L_8887165_SNP [dm6]	G	A	6.330e^-5	0.93	DOWNSTREAM CR44415 EXON CR44415	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	7495110	2L_7495110_SNP [dm3] 2L_7495110_SNP [dm6]	A	C	6.330e^-5	0.93	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9297943	3L_9297943_SNP [dm3] 3L_9304843_SNP [dm6]	G	A	6.368e^-5	0.93	INTERGENIC
3L	682829	3L_682829_DEL [dm3] 3L_682829_DEL [dm6]	TTAGC	A	6.397e^-5	0.93	UPSTREAM CG3386 DOWNSTREAM ebd1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2083884	3L_2083884_SNP [dm3] 3L_2083884_SNP [dm6]	A	G	6.531e^-5	0.934	NON_SYNONYMOUS_CODING sls INTRON sls
3R	9923400	3R_9923400_SNP [dm3] 3R_14097678_SNP [dm6]	G	A	6.572e^-5	0.934	SYNONYMOUS_CODING CG9920 UPSTREAM CCHa1
X	22055499	X_22055499_SNP [dm3] X_22653663_SNP [dm6]	A	C	6.575e^-5	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3303821	2L_3303821_INS [dm3] 2L_3303821_INS [dm6]	T	TT	6.708e^-5	0.937	UPSTREAM CG3277 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16497821	2R_16497821_SNP [dm3] 2R_20610316_SNP [dm6]	T	A	6.775e^-5	0.937	INTRON Hil
3L	18617648	3L_18617648_SNP [dm3] 3L_18624548_SNP [dm6]	A	T	6.842e^-5	0.937	UTR_3_PRIME bora
3R	17560785	3R_17560785_SNP [dm3] 3R_21735063_SNP [dm6]	A	C	6.876e^-5	0.937	DOWNSTREAM Sfp93F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	15390051	3L_15390051_SNP [dm3] 3L_15396951_SNP [dm6]	A	G	6.889e^-5	0.937	INTERGENIC
3R	23003446	3R_23003446_SNP [dm3] 3R_27177724_SNP [dm6]	A	T	6.894e^-5	0.937	INTRON Ser	TF binding site mE1_TFBS_cad
3L	15391680	3L_15391680_SNP [dm3] 3L_15398580_SNP [dm6]	G	A	6.948e^-5	0.938	INTERGENIC
X	12506445	X_12506445_SNP [dm3] X_12612412_SNP [dm6]	C	G	7.062e^-5	0.94	UTR_5_PRIME CG2543 UPSTREAM CG2543 & 1 other DOWNSTREAM CR45621 EXON CR45621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	15392041	3L_15392041_DEL [dm3] 3L_15398941_DEL [dm6]	CC	C	7.124e^-5	0.94	INTERGENIC
2R	19322579	2R_19322579_DEL [dm3] 2R_23435056_DEL [dm6]	ATGGCTCAAA	A	7.204e^-5	0.94	INTERGENIC
3L	15391743	3L_15391743_SNP [dm3] 3L_15398643_SNP [dm6]	T	G	7.217e^-5	0.94	INTERGENIC
3R	23118377	3R_23118377_SNP [dm3] 3R_27292655_SNP [dm6]	T	A	7.249e^-5	0.94	UPSTREAM CG3348 INTERGENIC
2L	16272591	2L_16272591_DEL [dm3] 2L_16272591_DEL [dm6]	AA	A	7.284e^-5	0.94	INTRON crp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3324308	2L_3324308_SNP [dm3] 2L_3324308_SNP [dm6]	G	T	7.360e^-5	0.94	START_GAINED CG33281 UTR_5_PRIME CG33281
2R	8672370	2R_8672370_SNP [dm3] 2R_12784865_SNP [dm6]	A	G	7.369e^-5	0.94	INTRON sca & 1 other	regulatory region REDfly_CRMs
3L	18867789	3L_18867789_SNP [dm3] 3L_18874689_SNP [dm6]	T	C	7.553e^-5	0.954	SYNONYMOUS_CODING Ugt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17508704	2L_17508704_SNP [dm3] 2L_17508704_SNP [dm6]	C	T	7.576e^-5	0.954	INTRON Dhc36C	TF binding site mE1_TFBS_cad
2R	3731998	2R_3731998_SNP [dm3] 2R_7844493_SNP [dm6]	T	A	7.636e^-5	0.955	INTRON Dgk
3R	21091862	3R_21091862_SNP [dm3] 3R_25266140_SNP [dm6]	T	C	7.733e^-5	0.961	UPSTREAM Aats-gln DOWNSTREAM CR45214 INTRON RIOK2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5649663	2R_5649663_SNP [dm3] 2R_9762158_SNP [dm6]	G	A	7.923e^-5	0.978	SYNONYMOUS_CODING trpl	TF binding site mE1_TFBS_cad
3L	9297955	3L_9297955_SNP [dm3] 3L_9304855_SNP [dm6]	A	C	8.026e^-5	0.978	INTERGENIC
3L	14706577	3L_14706577_SNP [dm3] 3L_14713477_SNP [dm6]	C	G	8.192e^-5	0.978	INTRON ome
3R	24098142	3R_24098142_SNP [dm3] 3R_28272420_SNP [dm6]	G	C	8.594e^-5	0.978	INTERGENIC
X	6640114	X_6640114_SNP [dm3] X_6746081_SNP [dm6]	T	C	8.598e^-5	0.978	DOWNSTREAM CR44964 EXON CR44895
X	17279270	X_17279270_SNP [dm3] X_17385237_SNP [dm6]	A	T	8.626e^-5	0.978	INTERGENIC
2L	12205736	2L_12205736_SNP [dm3] 2L_12205736_SNP [dm6]	G	T	8.641e^-5	0.978	UPSTREAM aret INTRON aret
3R	21033739	3R_21033739_SNP [dm3] 3R_25208017_SNP [dm6]	G	A	8.667e^-5	0.978	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2434596	3L_2434596_SNP [dm3] 3L_2434596_SNP [dm6]	T	G	8.706e^-5	0.978	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10775196	3L_10775196_SNP [dm3] 3L_10782096_SNP [dm6]	T	C	8.722e^-5	0.978	INTERGENIC
2L	12205747	2L_12205747_SNP [dm3] 2L_12205747_SNP [dm6]	A	T	8.740e^-5	0.978	UPSTREAM aret INTRON aret
3R	24103838	3R_24103838_SNP [dm3] 3R_28278116_SNP [dm6]	T	C	8.755e^-5	0.978	INTERGENIC
2L	10105324	2L_10105324_SNP [dm3] 2L_10105324_SNP [dm6]	C	G	8.769e^-5	0.978	INTRON CG44153 & 1 other
2L	8347780	2L_8347780_SNP [dm3] 2L_8347780_SNP [dm6]	G	T	8.777e^-5	0.978	INTRON CG7778
3R	24973554	3R_24973554_SNP [dm3] 3R_29147832_SNP [dm6]	G	T	8.825e^-5	0.978	SYNONYMOUS_CODING CG11882 UPSTREAM CG14511 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	2083767	3L_2083767_SNP [dm3] 3L_2083767_SNP [dm6]	G	A	8.867e^-5	0.978	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA
2R	17396974	2R_17396974_SNP [dm3] 2R_21509469_SNP [dm6]	G	A	8.936e^-5	0.978	INTRON MESK2
3L	18866392	3L_18866392_SNP [dm3] 3L_18873292_SNP [dm6]	C	T	9.017e^-5	0.978	UPSTREAM Rad9 INTRON Ugt
2L	7499308	2L_7499308_SNP [dm3] 2L_7499308_SNP [dm6]	T	C	9.067e^-5	0.978	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad
2R	5691458	2R_5691458_SNP [dm3] 2R_9803953_SNP [dm6]	T	A	9.070e^-5	0.978	INTRON CG1688
3L	3907818	3L_3907818_SNP [dm3] 3L_3907818_SNP [dm6]	A	C	9.072e^-5	0.978	DOWNSTREAM mge & 1 other INTERGENIC
2R	2709554	2R_2709554_SNP [dm3] 2R_6822049_SNP [dm6]	T	A	9.074e^-5	0.978	EXON CR44442
3R	22777776	3R_22777776_SNP [dm3] 3R_26952054_SNP [dm6]	C	T	9.080e^-5	0.978	INTRON CG6330
3R	2666136	3R_2666136_SNP [dm3] 3R_6840414_SNP [dm6]	A	G	9.152e^-5	0.978	INTRON Scr
3L	4351352	3L_4351352_SNP [dm3] 3L_4351352_SNP [dm6]	A	G	9.198e^-5	0.978	INTRON Cip4
X	1846068	X_1846068_SNP [dm3] X_1952035_SNP [dm6]	A	G	9.276e^-5	0.978	INTRON Hr4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10750707	3L_10750707_SNP [dm3] 3L_10757607_SNP [dm6]	T	G	9.322e^-5	0.978	INTERGENIC
2L	19601621	2L_19601621_DEL [dm3] 2L_19601621_DEL [dm6]	TATGCATTTATTTTTATATT...	T	9.368e^-5	0.978	INTRON CR44978 & 1 other
2R	5661164	2R_5661164_SNP [dm3] 2R_9773659_SNP [dm6]	A	G	9.448e^-5	0.978	INTRON CG1688
X	12021443	X_12021443_SNP [dm3] X_12127410_SNP [dm6]	A	C	9.507e^-5	0.978	UPSTREAM Ten-a INTRON Ten-a
2R	10492822	2R_10492822_SNP [dm3] 2R_14605317_SNP [dm6]	T	A	9.539e^-5	0.978	UPSTREAM tra2 & 1 other DOWNSTREAM CG33469 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3R	19684865	3R_19684865_DEL [dm3] 3R_23859143_DEL [dm6]	AC	A	9.549e^-5	0.978	DOWNSTREAM snRNA:U1:95Ca INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20493459	3R_20493459_SNP [dm3] 3R_24667737_SNP [dm6]	A	G	9.702e^-5	0.978	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
2R	10492911	2R_10492911_SNP [dm3] 2R_14605406_SNP [dm6]	C	T	9.706e^-5	0.978	UPSTREAM CG12868 DOWNSTREAM CG33469 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3R	21346274	3R_21346274_SNP [dm3] 3R_25520552_SNP [dm6]	T	C	9.717e^-5	0.978	INTRON msi
X	6639789	X_6639789_SNP [dm3] X_6745756_SNP [dm6]	C	A	9.751e^-5	0.978	DOWNSTREAM CR44964 INTRON CR44895
3L	3546553	3L_3546553_SNP [dm3] 3L_3546553_SNP [dm6]	A	T	9.945e^-5	0.983	INTRON Eip63E
X	10448492	X_10448492_SNP [dm3] X_10554459_SNP [dm6]	T	C	1.003e^-4	0.983	INTRON spri
3L	10775210	3L_10775210_SNP [dm3] 3L_10782110_SNP [dm6]	A	C	1.004e^-4	0.983	INTERGENIC
2R	10492909	2R_10492909_SNP [dm3] 2R_14605404_SNP [dm6]	C	T	1.029e^-4	0.983	UPSTREAM CG12868 DOWNSTREAM CG33469 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	10665030	2L_10665030_SNP [dm3] 2L_10665030_SNP [dm6]	T	A	1.034e^-4	0.983	INTRON CG31871
X	6640324	X_6640324_SNP [dm3] X_6746291_SNP [dm6]	C	A	1.037e^-4	0.983	DOWNSTREAM CR44964 EXON CR44895
2R	3606897	2R_3606897_SNP [dm3] 2R_7719392_SNP [dm6]	G	C	1.038e^-4	0.983	NON_SYNONYMOUS_CODING CG18812
2L	21864115	2L_21864115_SNP [dm3] 2L_21864115_SNP [dm6]	T	C	1.051e^-4	0.983	DOWNSTREAM CR44918 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19347489	3L_19347489_SNP [dm3] 3L_19354389_SNP [dm6]	G	T	1.061e^-4	0.983	INTRON CG32206
2L	2651098	2L_2651098_SNP [dm3] 2L_2651098_SNP [dm6]	A	G	1.062e^-4	0.983	SYNONYMOUS_CODING CG33125
2R	13704241	2R_13704241_SNP [dm3] 2R_17816736_SNP [dm6]	A	C	1.064e^-4	0.983	INTRON grh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	6553577	2L_6553577_SNP [dm3] 2L_6553577_SNP [dm6]	C	A	1.083e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	21207617	X_21207617_SNP [dm3] X_21336590_SNP [dm6]	T	G	1.086e^-4	0.983	INTRON tty
3L	7632393	3L_7632393_SNP [dm3] 3L_7639293_SNP [dm6]	G	T	1.090e^-4	0.983	UTR_3_PRIME CG33275 UPSTREAM snoRNA:Me18S-A1806 DOWNSTREAM CG33276
2L	16956373	2L_16956373_SNP [dm3] 2L_16956373_SNP [dm6]	T	A	1.096e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12915866	3R_12915866_SNP [dm3] 3R_17090144_SNP [dm6]	C	A	1.097e^-4	0.983	NON_SYNONYMOUS_CODING cal1
3L	3907849	3L_3907849_SNP [dm3] 3L_3907849_SNP [dm6]	A	G	1.110e^-4	0.983	DOWNSTREAM mge & 1 other INTERGENIC
X	4374953	X_4374953_SNP [dm3] X_4480920_SNP [dm6]	G	C	1.126e^-4	0.983	INTRON CR32773 & 1 other
X	21207622	X_21207622_SNP [dm3] X_21336595_SNP [dm6]	T	C	1.139e^-4	0.983	INTRON tty
2L	1450870	2L_1450870_SNP [dm3] 2L_1450870_SNP [dm6]	T	A	1.144e^-4	0.983	INTERGENIC
3L	15391562	3L_15391562_SNP [dm3] 3L_15398462_SNP [dm6]	A	T	1.148e^-4	0.983	INTERGENIC
3R	23688718	3R_23688718_SNP [dm3] 3R_27862996_SNP [dm6]	C	T	1.148e^-4	0.983	INTRON CG34353
X	6388727	X_6388727_SNP [dm3] X_6494694_SNP [dm6]	A	C	1.151e^-4	0.983	INTRON CG42340
X	12021444	X_12021444_SNP [dm3] X_12127411_SNP [dm6]	G	A	1.160e^-4	0.983	UPSTREAM Ten-a INTRON Ten-a
3R	19125733	3R_19125733_SNP [dm3] 3R_23300011_SNP [dm6]	G	A	1.163e^-4	0.983	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15391565	3L_15391565_DEL [dm3] 3L_15398465_DEL [dm6]	AATTTGAAGTGA...	A	1.169e^-4	0.983	INTERGENIC
3L	2121485	3L_2121485_SNP [dm3] 3L_2121485_SNP [dm6]	G	C	1.173e^-4	0.983	INTRON zormin	TF binding site BDTNP1_TFBS_twi
3R	26032650	3R_26032650_SNP [dm3] 3R_30206928_SNP [dm6]	T	C	1.175e^-4	0.983	UPSTREAM snoRNA:Psi28S-2149 DOWNSTREAM snoRNA:Psi18S-1377e & 5 others INTRON RpS7
X	9843864	X_9843864_SNP [dm3] X_9949831_SNP [dm6]	G	A	1.179e^-4	0.983	INTERGENIC
3R	19561988	3R_19561988_SNP [dm3] 3R_23736266_SNP [dm6]	G	A	1.185e^-4	0.983	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16023836	2R_16023836_SNP [dm3] 2R_20136331_SNP [dm6]	T	C	1.200e^-4	0.983	DOWNSTREAM CR44634 INTERGENIC
2R	14634072	2R_14634072_SNP [dm3] 2R_18746567_SNP [dm6]	G	A	1.211e^-4	0.983	INTRON Hs3st-A
3R	23766783	3R_23766783_SNP [dm3] 3R_27941061_SNP [dm6]	A	G	1.214e^-4	0.983	SYNONYMOUS_CODING CG5514	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5976381	3L_5976381_SNP [dm3] 3L_5983281_SNP [dm6]	G	A	1.214e^-4	0.983	DOWNSTREAM CR45439 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	4041057	3R_4041057_DEL [dm3] 3R_8215335_DEL [dm6]	TTT	T	1.221e^-4	0.983	INTERGENIC
X	1833593	X_1833593_SNP [dm3] X_1939560_SNP [dm6]	A	G	1.224e^-4	0.983	NON_SYNONYMOUS_CODING CG3857 UPSTREAM CG3587	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16490612	3L_16490612_SNP [dm3] 3L_16497512_SNP [dm6]	T	A	1.227e^-4	0.983	UPSTREAM st DOWNSTREAM CG33158 INTRON CG43373	TF binding site mE1_TFBS_cad
3L	4565614	3L_4565614_SNP [dm3] 3L_4565614_SNP [dm6]	A	G	1.244e^-4	0.983	INTRON CG42540	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12940912	X_12940912_SNP [dm3] X_13046879_SNP [dm6]	G	A	1.246e^-4	0.983	INTRON rad
2L	1450856	2L_1450856_SNP [dm3] 2L_1450856_SNP [dm6]	A	G	1.254e^-4	0.983	INTERGENIC
2L	17508715	2L_17508715_DEL [dm3] 2L_17508715_DEL [dm6]	CACCAC	GGTG	1.261e^-4	0.983	INTRON Dhc36C	TF binding site mE1_TFBS_cad
3R	23838480	3R_23838480_SNP [dm3] 3R_28012758_SNP [dm6]	C	T	1.265e^-4	0.983	INTERGENIC
3L	19330683	3L_19330683_SNP [dm3] 3L_19337583_SNP [dm6]	G	A	1.265e^-4	0.983	UTR_5_PRIME pip
2R	16023742	2R_16023742_SNP [dm3] 2R_20136237_SNP [dm6]	G	C	1.276e^-4	0.983	DOWNSTREAM CR44634 INTERGENIC
2L	12228866	2L_12228866_SNP [dm3] 2L_12228866_SNP [dm6]	G	T	1.281e^-4	0.983	INTRON aret
3R	24973537	3R_24973537_SNP [dm3] 3R_29147815_SNP [dm6]	G	A	1.292e^-4	0.983	NON_SYNONYMOUS_CODING CG11882 UPSTREAM CG14511 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	21475339	X_21475339_SNP [dm3] X_21604312_SNP [dm6]	C	A	1.292e^-4	0.983	INTRON CG14476	transposable element FlyBase
3L	9297963	3L_9297963_SNP [dm3] 3L_9304863_SNP [dm6]	A	T	1.294e^-4	0.983	INTERGENIC
3L	15389731	3L_15389731_SNP [dm3] 3L_15396631_SNP [dm6]	A	G	1.305e^-4	0.983	INTERGENIC
3L	13127012	3L_13127012_SNP [dm3] 3L_13133912_SNP [dm6]	A	G	1.306e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3892569	3L_3892569_SNP [dm3] 3L_3892569_SNP [dm6]	C	T	1.320e^-4	0.983	UPSTREAM Fie & 1 other DOWNSTREAM snRNA:U11 INTERGENIC
2L	19141841	2L_19141841_MNP [dm3] 2L_19141841_MNP [dm6]	CCTT	AGGC	1.328e^-4	0.983	INTRON brat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1847138	X_1847138_DEL [dm3] X_1953105_DEL [dm6]	ACCA	TG	1.329e^-4	0.983	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	16363018	2L_16363018_SNP [dm3] 2L_16363018_SNP [dm6]	A	G	1.331e^-4	0.983	INTERGENIC
3L	18866349	3L_18866349_SNP [dm3] 3L_18873249_SNP [dm6]	C	A	1.334e^-4	0.983	UPSTREAM Rad9 INTRON Ugt
3R	17581316	3R_17581316_SNP [dm3] 3R_21755594_SNP [dm6]	T	C	1.339e^-4	0.983	SYNONYMOUS_CODING CG31198	TF binding site mE1_TFBS_cad
2L	7495756	2L_7495756_DEL [dm3] 2L_7495756_DEL [dm6]	CGCACACAC	C	1.340e^-4	0.983	UTR_5_PRIME Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23676300	3R_23676300_SNP [dm3] 3R_27850578_SNP [dm6]	T	G	1.368e^-4	0.983	INTRON CG34353
2R	10492904	2R_10492904_SNP [dm3] 2R_14605399_SNP [dm6]	T	C	1.372e^-4	0.983	UPSTREAM CG12868 DOWNSTREAM CG33469 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	7636390	2L_7636390_SNP [dm3] 2L_7636390_SNP [dm6]	C	A	1.385e^-4	0.983	UPSTREAM CR44800 INTRON CR44799	TF binding site BDTNP1_TFBS_twi
3L	8882464	3L_8882464_SNP [dm3] 3L_8889364_SNP [dm6]	C	G	1.385e^-4	0.983	UTR_3_PRIME dally UPSTREAM CG43169
2L	14473843	2L_14473843_SNP [dm3] 2L_14473843_SNP [dm6]	C	A	1.388e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	20938405	3R_20938405_SNP [dm3] 3R_25112683_SNP [dm6]	T	C	1.388e^-4	0.983	UPSTREAM CG13650 DOWNSTREAM CG31108 INTERGENIC
2L	2299890	2L_2299890_SNP [dm3] 2L_2299890_SNP [dm6]	T	C	1.395e^-4	0.983	UPSTREAM CG31949 INTERGENIC
X	2339011	X_2339011_SNP [dm3] X_2444978_SNP [dm6]	G	A	1.401e^-4	0.983	UTR_3_PRIME boi
3L	8744536	3L_8744536_SNP [dm3] 3L_8751436_SNP [dm6]	C	G	1.415e^-4	0.983	EXON CR44527	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15340722	3R_15340722_SNP [dm3] 3R_19515000_SNP [dm6]	G	C	1.416e^-4	0.983	INTRON Dys
X	4374970	X_4374970_SNP [dm3] X_4480937_SNP [dm6]	C	A	1.418e^-4	0.983	INTRON CR32773 & 1 other
2R	5272911	2R_5272911_SNP [dm3] 2R_9385406_SNP [dm6]	T	C	1.426e^-4	0.983	INTRON CG13954
2L	19842535	2L_19842535_DEL [dm3] 2L_19842535_DEL [dm6]	AAACTA	A	1.429e^-4	0.983	INTRON sick
2L	3226099	2L_3226099_SNP [dm3] 2L_3226099_SNP [dm6]	C	T	1.431e^-4	0.983	INTERGENIC
3R	23688647	3R_23688647_SNP [dm3] 3R_27862925_SNP [dm6]	T	C	1.434e^-4	0.983	INTRON CG34353
2R	5640554	2R_5640554_SNP [dm3] 2R_9753049_SNP [dm6]	C	T	1.441e^-4	0.983	UPSTREAM trpl INTERGENIC
2L	15442996	2L_15442996_SNP [dm3] 2L_15442996_SNP [dm6]	T	C	1.442e^-4	0.983	DOWNSTREAM CR44862 INTERGENIC
X	14633544	X_14633544_SNP [dm3] X_14739511_SNP [dm6]	C	T	1.446e^-4	0.983	INTRON NetB
2R	13966525	2R_13966525_INS [dm3] 2R_18079020_INS [dm6]	A	ACGCTTA	1.447e^-4	0.983	INTRON CG34386
3R	2666113	3R_2666113_SNP [dm3] 3R_6840391_SNP [dm6]	G	A	1.453e^-4	0.983	INTRON Scr
X	11659597	X_11659597_SNP [dm3] X_11765564_SNP [dm6]	T	A	1.456e^-4	0.983	UPSTREAM CG9360 INTRON m	TF binding site mE1_TFBS_cnc
3L	7634515	3L_7634515_SNP [dm3] 3L_7641415_SNP [dm6]	A	C	1.457e^-4	0.983	NON_SYNONYMOUS_CODING CG7506 UPSTREAM CG33276	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	3216717	2L_3216717_SNP [dm3] 2L_3216717_SNP [dm6]	T	C	1.465e^-4	0.983	INTERGENIC
3L	11031736	3L_11031736_SNP [dm3] 3L_11038636_SNP [dm6]	A	T	1.468e^-4	0.983	INTRON CG43693
3R	21357190	3R_21357190_SNP [dm3] 3R_25531468_SNP [dm6]	A	T	1.469e^-4	0.983	INTRON msi
X	13809632	X_13809632_SNP [dm3] X_13915599_SNP [dm6]	T	C	1.470e^-4	0.983	INTRON mamo
3R	13970328	3R_13970328_SNP [dm3] 3R_18144606_SNP [dm6]	T	C	1.470e^-4	0.983	INTERGENIC
2L	14366731	2L_14366731_SNP [dm3] 2L_14366731_SNP [dm6]	T	A	1.475e^-4	0.983	UTR_3_PRIME spel1	TF binding site mE1_TFBS_cad
3R	21091784	3R_21091784_SNP [dm3] 3R_25266062_SNP [dm6]	G	T	1.484e^-4	0.983	SYNONYMOUS_CODING RIOK2 UPSTREAM Aats-gln DOWNSTREAM CR45214	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	22525362	3L_22525362_SNP [dm3] 3L_22532262_SNP [dm6]	A	G	1.523e^-4	0.983	INTERGENIC
3L	5687448	3L_5687448_SNP [dm3] 3L_5694348_SNP [dm6]	C	A	1.529e^-4	0.983	INTRON sif
2L	2286786	2L_2286786_SNP [dm3] 2L_2286786_SNP [dm6]	G	T	1.536e^-4	0.983	NON_SYNONYMOUS_CODING CG31681 DOWNSTREAM CG4271 & 1 other
2R	7326191	2R_7326191_DEL [dm3] 2R_11438686_DEL [dm6]	CT	C	1.538e^-4	0.983	INTRON CG7777
2R	12483268	2R_12483268_SNP [dm3] 2R_16595763_SNP [dm6]	C	T	1.541e^-4	0.983	SYNONYMOUS_CODING CG8303	TF binding site mE1_TFBS_sens
3L	10995618	3L_10995618_SNP [dm3] 3L_11002518_SNP [dm6]	G	A	1.547e^-4	0.983	INTRON klu
3R	10172974	3R_10172974_INS [dm3] 3R_14347252_INS [dm6]	G	GAG	1.550e^-4	0.983	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19322561	2R_19322561_SNP [dm3] 2R_23435038_SNP [dm6]	G	T	1.555e^-4	0.983	INTERGENIC
3R	12575601	3R_12575601_SNP [dm3] 3R_16749879_SNP [dm6]	T	A	1.573e^-4	0.983	DOWNSTREAM CG31275 INTRON bxd	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8887909	2L_8887909_SNP [dm3] 2L_8887909_SNP [dm6]	A	G	1.581e^-4	0.983	EXON CR44415	TF binding site mE1_TFBS_cad
2L	3324579	2L_3324579_SNP [dm3] 2L_3324579_SNP [dm6]	T	A	1.585e^-4	0.983	INTRON CG33281
X	20398427	X_20398427_SNP [dm3] X_20527400_SNP [dm6]	G	A	1.587e^-4	0.983	UPSTREAM CG42579 INTERGENIC	transposable element FlyBase
3R	19561849	3R_19561849_SNP [dm3] 3R_23736127_SNP [dm6]	A	C	1.591e^-4	0.983	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6640130	X_6640130_SNP [dm3] X_6746097_SNP [dm6]	T	G	1.606e^-4	0.983	DOWNSTREAM CR44964 EXON CR44895
2L	11375310	2L_11375310_SNP [dm3] 2L_11375310_SNP [dm6]	G	C	1.617e^-4	0.983	INTERGENIC	regulatory region REDfly_CRMs
X	12264438	X_12264438_SNP [dm3] X_12370405_SNP [dm6]	A	G	1.625e^-4	0.983	INTERGENIC
3R	20986091	3R_20986091_SNP [dm3] 3R_25160369_SNP [dm6]	G	C	1.632e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	549912	2L_549912_SNP [dm3] 2L_549912_SNP [dm6]	T	C	1.675e^-4	0.983	UPSTREAM Ets21C INTRON Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25176605	3R_25176605_SNP [dm3] 3R_29350883_SNP [dm6]	T	C	1.678e^-4	0.983	INTERGENIC
X	12021512	X_12021512_SNP [dm3] X_12127479_SNP [dm6]	A	T	1.684e^-4	0.983	UPSTREAM Ten-a INTRON Ten-a
3R	15048848	3R_15048848_SNP [dm3] 3R_19223126_SNP [dm6]	A	G	1.685e^-4	0.983	INTRON vib
2R	19020739	2R_19020739_SNP [dm3] 2R_23133216_SNP [dm6]	T	A	1.691e^-4	0.983	INTERGENIC
3L	10774707	3L_10774707_DEL [dm3] 3L_10781607_DEL [dm6]	CGC	C	1.701e^-4	0.983	INTERGENIC
3R	24994424	3R_24994424_SNP [dm3] 3R_29168702_SNP [dm6]	C	T	1.705e^-4	0.983	INTRON CG11898
2R	14982804	2R_14982804_SNP [dm3] 2R_19095299_SNP [dm6]	T	A	1.708e^-4	0.983	SYNONYMOUS_CODING Ir56a INTRON 5-HT1A
3L	7625101	3L_7625101_SNP [dm3] 3L_7632001_SNP [dm6]	T	A	1.718e^-4	0.983	INTRON CG33275
3L	8744541	3L_8744541_SNP [dm3] 3L_8751441_SNP [dm6]	C	T	1.720e^-4	0.983	EXON CR44527	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2083768	3L_2083768_SNP [dm3] 3L_2083768_SNP [dm6]	G	T	1.723e^-4	0.983	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA
2L	16939367	2L_16939367_SNP [dm3] 2L_16939367_SNP [dm6]	G	A	1.724e^-4	0.983	INTERGENIC
X	12380448	X_12380448_SNP [dm3] X_12486415_SNP [dm6]	A	C	1.734e^-4	0.983	UPSTREAM Cpr11A INTERGENIC
3L	13157736	3L_13157736_SNP [dm3] 3L_13164636_SNP [dm6]	C	A	1.735e^-4	0.983	INTERGENIC
X	12380445	X_12380445_INS [dm3] X_12486412_INS [dm6]	T	TT	1.741e^-4	0.983	UPSTREAM Cpr11A INTERGENIC
2L	8785310	2L_8785310_DEL [dm3] 2L_8785310_DEL [dm6]	TCGTT	T	1.747e^-4	0.983	INTERGENIC
3R	23769821	3R_23769821_SNP [dm3] 3R_27944099_SNP [dm6]	G	T	1.747e^-4	0.983	SYNONYMOUS_CODING mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	5787463	3L_5787463_DEL [dm3] 3L_5794363_DEL [dm6]	TAAAATGAACAATTTAAAAA...	T	1.758e^-4	0.983	UPSTREAM Bre1 DOWNSTREAM Tektin-C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	17280663	2R_17280663_SNP [dm3] 2R_21393158_SNP [dm6]	C	G	1.760e^-4	0.983	UTR_3_PRIME Sdc DOWNSTREAM Acox57D-d & 1 other
X	21207702	X_21207702_SNP [dm3] X_21336675_SNP [dm6]	A	T	1.769e^-4	0.983	INTRON tty
3R	25780246	3R_25780246_SNP [dm3] 3R_29954524_SNP [dm6]	A	T	1.774e^-4	0.983	INTRON TkR99D
3R	19719235	3R_19719235_SNP [dm3] 3R_23893513_SNP [dm6]	A	G	1.780e^-4	0.983	UPSTREAM tbrd-1 DOWNSTREAM sba INTERGENIC
X	20005226	X_20005226_SNP [dm3] X_20111193_SNP [dm6]	T	G	1.781e^-4	0.983	UPSTREAM karr INTERGENIC	transposable element FlyBase
2L	6843482	2L_6843482_SNP [dm3] 2L_6843482_SNP [dm6]	G	T	1.781e^-4	0.983	INTERGENIC
3R	26741352	3R_26741352_SNP [dm3] 3R_30915630_SNP [dm6]	C	A	1.789e^-4	0.983	INTRON Ptx1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15311315	3R_15311315_SNP [dm3] 3R_19485593_SNP [dm6]	G	A	1.790e^-4	0.983	INTRON Dys
2R	13413691	2R_13413691_SNP [dm3] 2R_17526186_SNP [dm6]	C	A	1.792e^-4	0.983	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13549637	3L_13549637_SNP [dm3] 3L_13556537_SNP [dm6]	A	C	1.793e^-4	0.983	INTRON bru-3
3L	8305910	3L_8305910_SNP [dm3] 3L_8312810_SNP [dm6]	C	T	1.798e^-4	0.983	INTRON CG7185	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9687227	2L_9687227_SNP [dm3] 2L_9687227_SNP [dm6]	T	C	1.800e^-4	0.983	INTRON Pka-C1
2L	1176207	2L_1176207_SNP [dm3] 2L_1176207_SNP [dm6]	C	T	1.825e^-4	0.983	SYNONYMOUS_CODING CG4887	TF binding site BDTNP1_TFBS_sna
3L	8401873	3L_8401873_SNP [dm3] 3L_8408773_SNP [dm6]	C	T	1.834e^-4	0.983	SYNONYMOUS_CODING Oseg1
3L	13365418	3L_13365418_SNP [dm3] 3L_13372318_SNP [dm6]	G	A	1.837e^-4	0.983	INTERGENIC
2L	3300232	2L_3300232_SNP [dm3] 2L_3300232_SNP [dm6]	T	A	1.846e^-4	0.983	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17508736	2L_17508736_SNP [dm3] 2L_17508736_SNP [dm6]	G	C	1.849e^-4	0.983	SPLICE_SITE_REGION Dhc36C INTRON Dhc36C	TF binding site mE1_TFBS_cad
2R	5261286	2R_5261286_SNP [dm3] 2R_9373781_SNP [dm6]	C	T	1.856e^-4	0.983	SYNONYMOUS_CODING CG13954	TF binding site mE1_TFBS_chinmo
2L	4305097	2L_4305097_SNP [dm3] 2L_4305097_SNP [dm6]	A	C	1.856e^-4	0.983	INTRON tutl
3R	25030065	3R_25030065_SNP [dm3] 3R_29204343_SNP [dm6]	C	T	1.860e^-4	0.983	UPSTREAM CG14508 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	10448951	X_10448951_SNP [dm3] X_10554918_SNP [dm6]	C	T	1.862e^-4	0.983	INTRON spri
3L	3713191	3L_3713191_SNP [dm3] 3L_3713191_SNP [dm6]	G	A	1.863e^-4	0.983	UPSTREAM CG43089 INTERGENIC
3R	19125696	3R_19125696_SNP [dm3] 3R_23299974_SNP [dm6]	G	A	1.871e^-4	0.983	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17779007	2L_17779007_SNP [dm3] 2L_17779007_SNP [dm6]	G	T	1.871e^-4	0.983	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
2R	16493773	2R_16493773_INS [dm3] 2R_20606268_INS [dm6]	A	ATAT	1.885e^-4	0.983	DOWNSTREAM Hil & 2 others INTRON bl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	5691446	2R_5691446_SNP [dm3] 2R_9803941_SNP [dm6]	G	T	1.889e^-4	0.983	INTRON CG1688
X	2992396	X_2992396_SNP [dm3] X_3098363_SNP [dm6]	A	G	1.889e^-4	0.983	INTRON kirre	regulatory region REDfly_CRMs
3R	12909192	3R_12909192_SNP [dm3] 3R_17083470_SNP [dm6]	A	T	1.895e^-4	0.983	SYNONYMOUS_CODING kuk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	3286468	3R_3286468_SNP [dm3] 3R_7460746_SNP [dm6]	T	C	1.896e^-4	0.983	INTERGENIC
X	5905305	X_5905305_SNP [dm3] X_6011272_SNP [dm6]	G	A	1.910e^-4	0.983	INTRON mab-21	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	15313066	X_15313066_SNP [dm3] X_15419033_SNP [dm6]	G	T	1.917e^-4	0.983	INTRON Cngl
3L	3892068	3L_3892068_SNP [dm3] 3L_3892068_SNP [dm6]	G	T	1.920e^-4	0.983	UPSTREAM Fie & 1 other DOWNSTREAM snRNA:U11 INTERGENIC
3R	18048909	3R_18048909_SNP [dm3] 3R_22223187_SNP [dm6]	C	A	1.925e^-4	0.983	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1406748	2R_1406748_DEL [dm3] 2R_5519243_DEL [dm6]	TT	T	1.934e^-4	0.983	UTR_5_PRIME CG30438 INTRON CG30438
X	14726337	X_14726337_SNP [dm3] X_14832304_SNP [dm6]	C	T	1.945e^-4	0.983	UPSTREAM CG14411 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
2L	2293056	2L_2293056_SNP [dm3] 2L_2293056_SNP [dm6]	G	T	1.952e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	14982764	2R_14982764_SNP [dm3] 2R_19095259_SNP [dm6]	T	C	1.959e^-4	0.983	NON_SYNONYMOUS_CODING Ir56a INTRON 5-HT1A
X	4374805	X_4374805_DEL [dm3] X_4480772_DEL [dm6]	CCACACCACAC...	C	1.959e^-4	0.983	INTRON CR32773 & 1 other
3L	2053550	3L_2053550_SNP [dm3] 3L_2053550_SNP [dm6]	C	T	1.968e^-4	0.983	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_sens
2L	1450867	2L_1450867_SNP [dm3] 2L_1450867_SNP [dm6]	A	T	1.988e^-4	0.983	INTERGENIC
2R	15667572	2R_15667572_DEL [dm3] 2R_19780067_DEL [dm6]	CAT	C	1.989e^-4	0.983	INTERGENIC
3L	722516	3L_722516_SNP [dm3] 3L_722516_SNP [dm6]	C	T	1.989e^-4	0.983	INTERGENIC
2R	17403708	2R_17403708_SNP [dm3] 2R_21516203_SNP [dm6]	A	G	1.990e^-4	0.983	NON_SYNONYMOUS_CODING MESK2 DOWNSTREAM CG10494
3R	21091730	3R_21091730_SNP [dm3] 3R_25266008_SNP [dm6]	T	C	1.992e^-4	0.983	SYNONYMOUS_CODING RIOK2 UPSTREAM Aats-gln DOWNSTREAM CR45214	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5643587	2L_5643587_SNP [dm3] 2L_5643587_SNP [dm6]	C	A	1.992e^-4	0.983	INTRON CG31646
3R	22130353	3R_22130353_SNP [dm3] 3R_26304631_SNP [dm6]	A	G	1.996e^-4	0.983	INTERGENIC
2L	17509456	2L_17509456_SNP [dm3] 2L_17509456_SNP [dm6]	G	T	2.007e^-4	0.983	SYNONYMOUS_CODING Dhc36C
3R	26488801	3R_26488801_SNP [dm3] 3R_30663079_SNP [dm6]	C	A	2.008e^-4	0.983	INTERGENIC
3R	18252843	3R_18252843_SNP [dm3] 3R_22427121_SNP [dm6]	A	G	2.011e^-4	0.983	SYNONYMOUS_CODING CG13847	TF binding site mE1_TFBS_chinmo
2L	5650085	2L_5650085_SNP [dm3] 2L_5650085_SNP [dm6]	C	T	2.012e^-4	0.983	INTRON CG31646
X	21207562	X_21207562_SNP [dm3] X_21336535_SNP [dm6]	G	C	2.017e^-4	0.983	INTRON tty
3R	17663230	3R_17663230_SNP [dm3] 3R_21837508_SNP [dm6]	G	C	2.030e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5272355	2R_5272355_SNP [dm3] 2R_9384850_SNP [dm6]	T	A	2.036e^-4	0.983	INTRON CG13954
3L	7413892	3L_7413892_SNP [dm3] 3L_7420792_SNP [dm6]	C	G	2.044e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_run
3R	23260726	3R_23260726_DEL [dm3] 3R_27435004_DEL [dm6]	CCA	C	2.045e^-4	0.983	INTRON side	TF binding site BDTNP1_TFBS_twi
2L	3324509	2L_3324509_SNP [dm3] 2L_3324509_SNP [dm6]	G	A	2.050e^-4	0.983	INTRON CG33281
3L	16506148	3L_16506148_SNP [dm3] 3L_16513048_SNP [dm6]	A	G	2.052e^-4	0.983	SYNONYMOUS_CODING CG43373
3R	10409225	3R_10409225_SNP [dm3] 3R_14583503_SNP [dm6]	C	G	2.061e^-4	0.983	INTRON stumps
2R	13836350	2R_13836350_SNP [dm3] 2R_17948845_SNP [dm6]	C	A	2.062e^-4	0.983	INTERGENIC
X	15812655	X_15812655_SNP [dm3] X_15918622_SNP [dm6]	G	A	2.069e^-4	0.983	SYNONYMOUS_CODING CG8909
2R	5640543	2R_5640543_SNP [dm3] 2R_9753038_SNP [dm6]	G	A	2.074e^-4	0.983	UPSTREAM trpl INTERGENIC
2L	14366729	2L_14366729_SNP [dm3] 2L_14366729_SNP [dm6]	G	A	2.074e^-4	0.983	UTR_3_PRIME spel1	TF binding site mE1_TFBS_cad
X	19099065	X_19099065_SNP [dm3] X_19205032_SNP [dm6]	G	A	2.085e^-4	0.983	INTRON Ulp1
2L	3303746	2L_3303746_SNP [dm3] 2L_3303746_SNP [dm6]	T	A	2.087e^-4	0.983	UPSTREAM CG3277 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	19601615	2L_19601615_SNP [dm3] 2L_19601615_SNP [dm6]	C	A	2.088e^-4	0.983	INTRON CR44978 & 1 other
2L	10766070	2L_10766070_DEL [dm3] 2L_10766070_DEL [dm6]	GTTG	G	2.096e^-4	0.983	UTR_3_PRIME UbcD2
2L	17049354	2L_17049354_SNP [dm3] 2L_17049354_SNP [dm6]	C	T	2.101e^-4	0.983	INTERGENIC
X	2996171	X_2996171_SNP [dm3] X_3102138_SNP [dm6]	C	G	2.112e^-4	0.983	INTRON kirre
X	4477310	X_4477310_SNP [dm3] X_4583277_SNP [dm6]	T	C	2.112e^-4	0.983	INTRON CR32773
2L	2302846	2L_2302846_SNP [dm3] 2L_2302846_SNP [dm6]	G	T	2.117e^-4	0.983	INTERGENIC
2R	1317167	2R_1317167_SNP [dm3] 2R_5429662_SNP [dm6]	A	G	2.136e^-4	0.983	INTRON laccase2	transposable element FlyBase
2L	1199854	2L_1199854_SNP [dm3] 2L_1199854_SNP [dm6]	C	A	2.141e^-4	0.983	UTR_3_PRIME CG43348 UPSTREAM CG43349 & 2 others DOWNSTREAM CG43348
X	6640013	X_6640013_SNP [dm3] X_6745980_SNP [dm6]	C	T	2.146e^-4	0.983	DOWNSTREAM CR44964 EXON CR44895
X	15313054	X_15313054_SNP [dm3] X_15419021_SNP [dm6]	C	A	2.153e^-4	0.983	INTRON Cngl
3R	12909071	3R_12909071_SNP [dm3] 3R_17083349_SNP [dm6]	C	A	2.157e^-4	0.983	NON_SYNONYMOUS_CODING kuk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6173897	2L_6173897_SNP [dm3] 2L_6173897_SNP [dm6]	A	G	2.160e^-4	0.983	INTERGENIC
3L	4392460	3L_4392460_SNP [dm3] 3L_4392460_SNP [dm6]	A	C	2.175e^-4	0.983	INTRON slow
X	21471059	X_21471059_SNP [dm3] X_21600032_SNP [dm6]	G	A	2.177e^-4	0.983	DOWNSTREAM CG14476 INTERGENIC
3R	18566042	3R_18566042_SNP [dm3] 3R_22740320_SNP [dm6]	C	A	2.207e^-4	0.983	SYNONYMOUS_CODING Dcr-1 UPSTREAM CG6985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	14496879	3L_14496879_SNP [dm3] 3L_14503779_SNP [dm6]	A	T	2.208e^-4	0.983	INTRON bbg
X	18237806	X_18237806_DEL [dm3] X_18343773_DEL [dm6]	CTAC	C	2.209e^-4	0.983	INTRON CG6123	TF binding site mE1_TFBS_chinmo
3R	21439971	3R_21439971_SNP [dm3] 3R_25614249_SNP [dm6]	C	T	2.210e^-4	0.983	SYNONYMOUS_CODING CG5079 INTRON Npl4
2R	3494479	2R_3494479_SNP [dm3] 2R_7606974_SNP [dm6]	G	T	2.242e^-4	0.983	INTRON CG1358	TF binding site BDTNP1_TFBS_twi
X	9762753	X_9762753_SNP [dm3] X_9868720_SNP [dm6]	T	C	2.243e^-4	0.983	UPSTREAM CG45060 INTERGENIC
X	5905359	X_5905359_DEL [dm3] X_6011326_DEL [dm6]	AGA	A	2.256e^-4	0.983	INTRON mab-21	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	5905372	X_5905372_SNP [dm3] X_6011339_SNP [dm6]	A	T	2.256e^-4	0.983	INTRON mab-21	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	8780602	3L_8780602_SNP [dm3] 3L_8787502_SNP [dm6]	T	A	2.264e^-4	0.983	DOWNSTREAM CG5804 INTRON Fhos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7628553	3L_7628553_SNP [dm3] 3L_7635453_SNP [dm6]	T	C	2.265e^-4	0.983	INTRON CG33275	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20402883	3R_20402883_SNP [dm3] 3R_24577161_SNP [dm6]	T	C	2.265e^-4	0.983	INTRON CG13624	TF binding site mE1_TFBS_Trl
X	7907836	X_7907836_DEL [dm3] X_8013803_DEL [dm6]	TT	T	2.266e^-4	0.983	INTRON Tbh
3L	5959756	3L_5959756_SNP [dm3] 3L_5966656_SNP [dm6]	G	A	2.268e^-4	0.983	DOWNSTREAM CG10479 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26034920	3R_26034920_SNP [dm3] 3R_30209198_SNP [dm6]	T	C	2.272e^-4	0.983	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14908099	3R_14908099_SNP [dm3] 3R_19082377_SNP [dm6]	A	T	2.272e^-4	0.983	INTRON cdi
3R	17560634	3R_17560634_DEL [dm3] 3R_21734912_DEL [dm6]	ATATTCC	A	2.273e^-4	0.983	DOWNSTREAM Sfp93F INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20250569	3R_20250569_SNP [dm3] 3R_24424847_SNP [dm6]	G	A	2.282e^-4	0.983	INTRON nAChRalpha1
X	10066381	X_10066381_SNP [dm3] X_10172348_SNP [dm6]	A	G	2.285e^-4	0.983	INTRON CG43902 & 1 other
3L	4349019	3L_4349019_SNP [dm3] 3L_4349019_SNP [dm6]	T	C	2.291e^-4	0.983	INTRON Cip4
3L	2603712	3L_2603712_SNP [dm3] 3L_2603712_SNP [dm6]	C	T	2.294e^-4	0.983	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13458156	X_13458156_INS [dm3] X_13564123_INS [dm6]	T	TGCGTGTTTGT...	2.298e^-4	0.983	UTR_5_PRIME Tango13 DOWNSTREAM CG32633	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4051033	3R_4051033_SNP [dm3] 3R_8225311_SNP [dm6]	T	C	2.302e^-4	0.983	EXON CR45551	TF binding site mE1_TFBS_cad
3L	4269972	3L_4269972_SNP [dm3] 3L_4269972_SNP [dm6]	T	C	2.304e^-4	0.983	INTRON CG1273	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26034948	3R_26034948_SNP [dm3] 3R_30209226_SNP [dm6]	G	C	2.314e^-4	0.983	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25030053	3R_25030053_SNP [dm3] 3R_29204331_SNP [dm6]	T	A	2.318e^-4	0.983	UPSTREAM CG14508 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22828519	3R_22828519_SNP [dm3] 3R_27002797_SNP [dm6]	T	A	2.323e^-4	0.983	UTR_3_PRIME CG31077 DOWNSTREAM CG6296 INTRON RYa-R
2L	6173902	2L_6173902_SNP [dm3] 2L_6173902_SNP [dm6]	A	C	2.325e^-4	0.983	INTERGENIC
2L	6173903	2L_6173903_SNP [dm3] 2L_6173903_SNP [dm6]	T	G	2.325e^-4	0.983	INTERGENIC
2R	5417999	2R_5417999_SNP [dm3] 2R_9530494_SNP [dm6]	G	A	2.333e^-4	0.983	INTRON brp
2L	7925559	2L_7925559_INS [dm3] 2L_7925559_INS [dm6]	T	TC	2.339e^-4	0.983	INTRON Snoo
3L	18617654	3L_18617654_SNP [dm3] 3L_18624554_SNP [dm6]	A	G	2.340e^-4	0.983	UTR_3_PRIME bora
X	3098247	X_3098247_SNP [dm3] X_3204214_SNP [dm6]	A	T	2.341e^-4	0.983	INTRON dnc
2L	4230919	2L_4230919_SNP [dm3] 2L_4230919_SNP [dm6]	G	C	2.343e^-4	0.983	INTERGENIC
2R	5272932	2R_5272932_SNP [dm3] 2R_9385427_SNP [dm6]	G	A	2.347e^-4	0.983	INTRON CG13954
X	12676201	X_12676201_INS [dm3] X_12782168_INS [dm6]	T	TGACCGTGAA	2.357e^-4	0.983	INTRON CG32647
X	16295943	X_16295943_INS [dm3] X_16401910_INS [dm6]	A	AA	2.358e^-4	0.983	INTRON CG9981
3L	15392798	3L_15392798_SNP [dm3] 3L_15399698_SNP [dm6]	A	T	2.362e^-4	0.983	INTERGENIC
3L	3907820	3L_3907820_DEL [dm3] 3L_3907820_DEL [dm6]	AGTTT	A	2.364e^-4	0.983	DOWNSTREAM mge & 1 other INTERGENIC
2L	10912406	2L_10912406_SNP [dm3] 2L_10912406_SNP [dm6]	A	G	2.386e^-4	0.983	INTERGENIC
X	2992354	X_2992354_SNP [dm3] X_3098321_SNP [dm6]	A	G	2.393e^-4	0.983	INTRON kirre	regulatory region REDfly_CRMs
3L	682872	3L_682872_SNP [dm3] 3L_682872_SNP [dm6]	T	A	2.400e^-4	0.983	UPSTREAM CG3386 DOWNSTREAM ebd1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	4899436	3R_4899436_SNP [dm3] 3R_9073714_SNP [dm6]	C	G	2.405e^-4	0.983	INTRON pum
X	13364523	X_13364523_SNP [dm3] X_13470490_SNP [dm6]	G	A	2.406e^-4	0.983	INTRON Neto
2L	920902	2L_920902_SNP [dm3] 2L_920902_SNP [dm6]	A	G	2.407e^-4	0.983	INTERGENIC
3R	20614201	3R_20614201_SNP [dm3] 3R_24788479_SNP [dm6]	A	G	2.416e^-4	0.983	SYNONYMOUS_CODING CG13634 INTRON Ets96B	TF binding site mE1_TFBS_chinmo
2L	13955885	2L_13955885_SNP [dm3] 2L_13955885_SNP [dm6]	T	A	2.430e^-4	0.983	UTR_3_PRIME Ance-3 DOWNSTREAM Ance-3
X	20019535	X_20019535_SNP [dm3] X_20125502_SNP [dm6]	A	G	2.433e^-4	0.983	DOWNSTREAM CG34331 INTERGENIC
2R	4013819	2R_4013819_SNP [dm3] 2R_8126314_SNP [dm6]	T	C	2.437e^-4	0.983	SYNONYMOUS_CODING coil	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2L	5017513	2L_5017513_SNP [dm3] 2L_5017513_SNP [dm6]	T	A	2.437e^-4	0.983	SYNONYMOUS_CODING vkg	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3292704	3L_3292704_SNP [dm3] 3L_3292704_SNP [dm6]	G	A	2.439e^-4	0.983	INTRON CG12009
2L	20918543	2L_20918543_SNP [dm3] 2L_20918543_SNP [dm6]	G	C	2.441e^-4	0.983	DOWNSTREAM Mtp INTRON sky & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	12205622	2L_12205622_SNP [dm3] 2L_12205622_SNP [dm6]	T	G	2.449e^-4	0.983	UPSTREAM aret INTRON aret
X	10448845	X_10448845_SNP [dm3] X_10554812_SNP [dm6]	C	T	2.449e^-4	0.983	INTRON spri
2L	2272670	2L_2272670_SNP [dm3] 2L_2272670_SNP [dm6]	G	A	2.453e^-4	0.983	INTRON CR43753
3L	11584894	3L_11584894_SNP [dm3] 3L_11591794_SNP [dm6]	A	G	2.455e^-4	0.983	UPSTREAM CG33268 DOWNSTREAM CR45672 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3227124	2L_3227124_SNP [dm3] 2L_3227124_SNP [dm6]	T	A	2.462e^-4	0.983	INTERGENIC
2L	11973435	2L_11973435_SNP [dm3] 2L_11973435_SNP [dm6]	C	G	2.468e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2338411	X_2338411_SNP [dm3] X_2444378_SNP [dm6]	C	A	2.474e^-4	0.983	UTR_3_PRIME boi UPSTREAM tko	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3R	13571730	3R_13571730_SNP [dm3] 3R_17746008_SNP [dm6]	C	T	2.474e^-4	0.983	UTR_3_PRIME TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2286085	2L_2286085_SNP [dm3] 2L_2286085_SNP [dm6]	T	G	2.477e^-4	0.983	NON_SYNONYMOUS_CODING CG31681 DOWNSTREAM CG4271 & 1 other
3R	2226716	3R_2226716_DEL [dm3] 3R_6400994_DEL [dm6]	GACTGTCGTGTTCAG...	G	2.480e^-4	0.983	INTRON Dmtn	TF binding site BDTNP1_TFBS_dl
3R	15640609	3R_15640609_SNP [dm3] 3R_19814887_SNP [dm6]	T	A	2.484e^-4	0.983	INTRON bnl
3R	23799635	3R_23799635_SNP [dm3] 3R_27973913_SNP [dm6]	C	T	2.488e^-4	0.983	INTRON betaTub97EF
2R	10022262	2R_10022262_SNP [dm3] 2R_14134757_SNP [dm6]	T	C	2.493e^-4	0.983	INTRON Prosap
X	3731271	X_3731271_SNP [dm3] X_3837238_SNP [dm6]	T	C	2.494e^-4	0.983	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16878643	3R_16878643_DEL [dm3] 3R_21052921_DEL [dm6]	TTTTGATTGAAGTGAAAAT...	T	2.499e^-4	0.983	DOWNSTREAM Mvl INTRON Mvl
3R	20777022	3R_20777022_SNP [dm3] 3R_24951300_SNP [dm6]	A	T	2.514e^-4	0.983	INTERGENIC
2R	18597056	2R_18597056_SNP [dm3] 2R_22709551_SNP [dm6]	A	T	2.518e^-4	0.983	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275
X	10448749	X_10448749_SNP [dm3] X_10554716_SNP [dm6]	A	G	2.522e^-4	0.983	INTRON spri
X	15313058	X_15313058_SNP [dm3] X_15419025_SNP [dm6]	G	T	2.536e^-4	0.983	INTRON Cngl
3L	8305864	3L_8305864_SNP [dm3] 3L_8312764_SNP [dm6]	G	A	2.537e^-4	0.983	INTRON CG7185	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10625059	3L_10625059_SNP [dm3] 3L_10631959_SNP [dm6]	G	A	2.538e^-4	0.983	SYNONYMOUS_CODING hay INTRON CG34001	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	23265114	3R_23265114_SNP [dm3] 3R_27439392_SNP [dm6]	C	T	2.546e^-4	0.983	UPSTREAM CG43447 INTRON CG44290	TF binding site BDTNP1_TFBS_twi
3L	8807489	3L_8807489_SNP [dm3] 3L_8814389_SNP [dm6]	A	T	2.554e^-4	0.983	INTERGENIC
X	3918948	X_3918948_SNP [dm3] X_4024915_SNP [dm6]	G	A	2.555e^-4	0.983	INTERGENIC
2R	5645177	2R_5645177_SNP [dm3] 2R_9757672_SNP [dm6]	C	G	2.556e^-4	0.983	NON_SYNONYMOUS_CODING CG1690 INTRON trpl
X	4374767	X_4374767_SNP [dm3] X_4480734_SNP [dm6]	C	A	2.560e^-4	0.983	INTRON CR32773 & 1 other
2R	10342946	2R_10342946_SNP [dm3] 2R_14455441_SNP [dm6]	T	C	2.565e^-4	0.983	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12021468	X_12021468_SNP [dm3] X_12127435_SNP [dm6]	T	A	2.566e^-4	0.983	UPSTREAM Ten-a INTRON Ten-a
3L	12761254	3L_12761254_SNP [dm3] 3L_12768154_SNP [dm6]	T	C	2.567e^-4	0.983	SYNONYMOUS_CODING CG32113 DOWNSTREAM Hip1
3L	2121484	3L_2121484_SNP [dm3] 3L_2121484_SNP [dm6]	A	G	2.569e^-4	0.983	INTRON zormin	TF binding site BDTNP1_TFBS_twi
3R	18519635	3R_18519635_SNP [dm3] 3R_22693913_SNP [dm6]	G	A	2.572e^-4	0.983	SYNONYMOUS_CODING Nup133	TF binding site mE1_TFBS_cad
3R	19901238	3R_19901238_SNP [dm3] 3R_24075516_SNP [dm6]	C	A	2.612e^-4	0.983	INTRON 4EHP
3R	14618696	3R_14618696_SNP [dm3] 3R_18792974_SNP [dm6]	T	C	2.615e^-4	0.983	UPSTREAM CG7720 INTRON CG7720
X	1846358	X_1846358_SNP [dm3] X_1952325_SNP [dm6]	G	A	2.627e^-4	0.983	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22698844	3R_22698844_SNP [dm3] 3R_26873122_SNP [dm6]	C	T	2.637e^-4	0.983	UTR_3_PRIME Rb97D DOWNSTREAM Rb97D
3R	26578441	3R_26578441_SNP [dm3] 3R_30752719_SNP [dm6]	T	A	2.647e^-4	0.983	INTERGENIC
2R	18032128	2R_18032128_DEL [dm3] 2R_22144623_DEL [dm6]	TGTAT	T	2.650e^-4	0.983	INTRON a	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	2302307	2L_2302307_SNP [dm3] 2L_2302307_SNP [dm6]	A	T	2.650e^-4	0.983	INTERGENIC
2L	4623901	2L_4623901_SNP [dm3] 2L_4623901_SNP [dm6]	A	C	2.664e^-4	0.983	INTERGENIC
2L	4671929	2L_4671929_SNP [dm3] 2L_4671929_SNP [dm6]	T	A	2.666e^-4	0.983	INTERGENIC
2L	17509243	2L_17509243_SNP [dm3] 2L_17509243_SNP [dm6]	C	T	2.670e^-4	0.983	SYNONYMOUS_CODING Dhc36C
2L	17492167	2L_17492167_SNP [dm3] 2L_17492167_SNP [dm6]	G	A	2.682e^-4	0.983	UTR_5_PRIME qua INTRON qua
X	12363965	X_12363965_SNP [dm3] X_12469932_SNP [dm6]	A	T	2.682e^-4	0.983	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11921483	3L_11921483_SNP [dm3] 3L_11928383_SNP [dm6]	C	A	2.686e^-4	0.983	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	683279	3L_683279_SNP [dm3] 3L_683279_SNP [dm6]	C	G	2.689e^-4	0.983	NON_SYNONYMOUS_CODING ebd1 UPSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24098944	3R_24098944_SNP [dm3] 3R_28273222_SNP [dm6]	G	A	2.689e^-4	0.983	INTERGENIC
3L	3893574	3L_3893574_SNP [dm3] 3L_3893574_SNP [dm6]	G	A	2.695e^-4	0.983	SYNONYMOUS_CODING Fie UPSTREAM snRNA:U11
X	11662557	X_11662557_SNP [dm3] X_11768524_SNP [dm6]	G	A	2.702e^-4	0.983	SYNONYMOUS_CODING m
2R	5633477	2R_5633477_SNP [dm3] 2R_9745972_SNP [dm6]	C	T	2.704e^-4	0.983	UTR_5_PRIME sqa UPSTREAM sqa
3L	4594400	3L_4594400_SNP [dm3] 3L_4594400_SNP [dm6]	T	C	2.724e^-4	0.983	UTR_3_PRIME Src64B DOWNSTREAM Src64B
3R	21091745	3R_21091745_SNP [dm3] 3R_25266023_SNP [dm6]	T	A	2.725e^-4	0.983	SYNONYMOUS_CODING RIOK2 UPSTREAM Aats-gln DOWNSTREAM CR45214	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12007537	3L_12007537_SNP [dm3] 3L_12014437_SNP [dm6]	G	A	2.726e^-4	0.983	INTRON rols
3R	14130320	3R_14130320_SNP [dm3] 3R_18304598_SNP [dm6]	A	G	2.731e^-4	0.983	SYNONYMOUS_CODING PKD	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12380444	X_12380444_SNP [dm3] X_12486411_SNP [dm6]	A	T	2.739e^-4	0.983	UPSTREAM Cpr11A INTERGENIC
3R	23003429	3R_23003429_SNP [dm3] 3R_27177707_SNP [dm6]	A	C	2.739e^-4	0.983	INTRON Ser	TF binding site mE1_TFBS_cad
X	2992365	X_2992365_SNP [dm3] X_3098332_SNP [dm6]	A	T	2.739e^-4	0.983	INTRON kirre	regulatory region REDfly_CRMs
2L	2286081	2L_2286081_SNP [dm3] 2L_2286081_SNP [dm6]	T	C	2.743e^-4	0.983	NON_SYNONYMOUS_CODING CG31681 DOWNSTREAM CG4271 & 1 other
3R	22771696	3R_22771696_SNP [dm3] 3R_26945974_SNP [dm6]	C	T	2.744e^-4	0.983	DOWNSTREAM sda INTRON CG14252	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	2574658	X_2574658_SNP [dm3] X_2680625_SNP [dm6]	T	G	2.754e^-4	0.983	NON_SYNONYMOUS_CODING HLH3B	TF binding site mE1_TFBS_chinmo
3L	11667524	3L_11667524_SNP [dm3] 3L_11674424_SNP [dm6]	G	A	2.761e^-4	0.983	SYNONYMOUS_CODING CG32085	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6240023	2L_6240023_SNP [dm3] 2L_6240023_SNP [dm6]	G	T	2.765e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3310479	2L_3310479_SNP [dm3] 2L_3310479_SNP [dm6]	G	A	2.768e^-4	0.983	INTRON CG3277 & 1 other
2R	15667589	2R_15667589_SNP [dm3] 2R_19780084_SNP [dm6]	G	C	2.774e^-4	0.983	INTERGENIC
3L	10995630	3L_10995630_SNP [dm3] 3L_11002530_SNP [dm6]	T	A	2.775e^-4	0.983	INTRON klu
3L	683252	3L_683252_SNP [dm3] 3L_683252_SNP [dm6]	G	T	2.777e^-4	0.983	SYNONYMOUS_CODING ebd1 UPSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19697974	2L_19697974_SNP [dm3] 2L_19697974_SNP [dm6]	G	A	2.784e^-4	0.983	INTRON Lar
3L	16458605	3L_16458605_SNP [dm3] 3L_16465505_SNP [dm6]	G	C	2.793e^-4	0.983	INTRON CG33158
3L	2121464	3L_2121464_SNP [dm3] 3L_2121464_SNP [dm6]	C	A	2.794e^-4	0.983	INTRON zormin	TF binding site BDTNP1_TFBS_twi
3R	19901147	3R_19901147_SNP [dm3] 3R_24075425_SNP [dm6]	G	A	2.797e^-4	0.983	INTRON 4EHP
2L	10976576	2L_10976576_SNP [dm3] 2L_10976576_SNP [dm6]	A	T	2.800e^-4	0.983	UPSTREAM SCAR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	4623588	2L_4623588_SNP [dm3] 2L_4623588_SNP [dm6]	T	C	2.803e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14330314	3R_14330314_SNP [dm3] 3R_18504592_SNP [dm6]	T	C	2.806e^-4	0.983	UPSTREAM fru INTRON fru
3L	10126924	3L_10126924_SNP [dm3] 3L_10133824_SNP [dm6]	A	G	2.808e^-4	0.983	INTRON dpr6
3R	26535328	3R_26535328_INS [dm3] 3R_30709606_INS [dm6]	T	TG	2.809e^-4	0.983	INTERGENIC
2R	18939241	2R_18939241_SNP [dm3] 2R_23051718_SNP [dm6]	T	A	2.819e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16878535	3R_16878535_SNP [dm3] 3R_21052813_SNP [dm6]	A	C	2.822e^-4	0.983	DOWNSTREAM Mvl INTRON Mvl
3L	8720039	3L_8720039_SNP [dm3] 3L_8726939_SNP [dm6]	A	G	2.829e^-4	0.983	DOWNSTREAM CG6511 INTRON Cp18	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22529118	3L_22529118_SNP [dm3] 3L_22536018_SNP [dm6]	G	C	2.830e^-4	0.983	INTERGENIC
3L	7866236	3L_7866236_SNP [dm3] 3L_7873136_SNP [dm6]	C	T	2.835e^-4	0.983	INTRON CG32365	TF binding site mE1_TFBS_kn
2R	5653680	2R_5653680_SNP [dm3] 2R_9766175_SNP [dm6]	T	C	2.840e^-4	0.983	UPSTREAM CR44205 DOWNSTREAM CG1688 & 1 other INTERGENIC
3L	5976501	3L_5976501_SNP [dm3] 3L_5983401_SNP [dm6]	G	A	2.859e^-4	0.983	DOWNSTREAM CR45439 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	4532009	2R_4532009_SNP [dm3] 2R_8644504_SNP [dm6]	T	G	2.870e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	3265088	3R_3265088_SNP [dm3] 3R_7439366_SNP [dm6]	C	T	2.870e^-4	0.983	UPSTREAM CG14598 INTERGENIC
3R	21346951	3R_21346951_SNP [dm3] 3R_25521229_SNP [dm6]	A	T	2.890e^-4	0.983	INTRON msi
2R	14999253	2R_14999253_SNP [dm3] 2R_19111748_SNP [dm6]	C	T	2.894e^-4	0.983	INTRON 5-HT1A
X	14757166	X_14757166_SNP [dm3] X_14863133_SNP [dm6]	C	A	2.900e^-4	0.983	UTR_3_PRIME CG9518 INTRON Flo2
3R	26035497	3R_26035497_SNP [dm3] 3R_30209775_SNP [dm6]	A	T	2.901e^-4	0.983	UPSTREAM RpS7 & 1 other INTERGENIC
X	14757080	X_14757080_SNP [dm3] X_14863047_SNP [dm6]	G	C	2.913e^-4	0.983	UTR_3_PRIME CG9518 INTRON Flo2
3R	22283697	3R_22283697_MNP [dm3] 3R_26457975_MNP [dm6]	TAT	CCC	2.917e^-4	0.983	UPSTREAM CG14238 DOWNSTREAM CG14237 INTERGENIC
3R	20479336	3R_20479336_SNP [dm3] 3R_24653614_SNP [dm6]	G	C	2.919e^-4	0.983	NON_SYNONYMOUS_CODING CG31125 DOWNSTREAM ash2	TF binding site mE1_TFBS_chinmo
3L	7644167	3L_7644167_SNP [dm3] 3L_7651067_SNP [dm6]	C	T	2.922e^-4	0.983	UPSTREAM PGRP-SD DOWNSTREAM CG7492 INTRON CG32373
2L	19601647	2L_19601647_SNP [dm3] 2L_19601647_SNP [dm6]	T	C	2.924e^-4	0.983	INTRON CR44978 & 1 other
2L	964000	2L_964000_SNP [dm3] 2L_964000_SNP [dm6]	G	T	2.925e^-4	0.983	INTERGENIC
X	12676211	X_12676211_INS [dm3] X_12782178_INS [dm6]	T	CTA	2.937e^-4	0.983	INTRON CG32647
2L	13081656	2L_13081656_SNP [dm3] 2L_13081656_SNP [dm6]	T	G	2.940e^-4	0.983	INTERGENIC
3L	10450411	3L_10450411_SNP [dm3] 3L_10457311_SNP [dm6]	T	A	2.942e^-4	0.983	INTERGENIC
2L	1450845	2L_1450845_SNP [dm3] 2L_1450845_SNP [dm6]	A	G	2.948e^-4	0.983	INTERGENIC
2L	7636448	2L_7636448_SNP [dm3] 2L_7636448_SNP [dm6]	T	C	2.957e^-4	0.983	UPSTREAM CR44800 EXON CR44799	TF binding site BDTNP1_TFBS_twi
3L	7831900	3L_7831900_SNP [dm3] 3L_7838800_SNP [dm6]	G	A	2.958e^-4	0.983	INTRON Pdp1	regulatory region REDfly_CRMs
3L	5764253	3L_5764253_SNP [dm3] 3L_5771153_SNP [dm6]	G	A	2.966e^-4	0.983	UPSTREAM scny INTRON scny	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	17304538	2R_17304538_SNP [dm3] 2R_21417033_SNP [dm6]	G	C	2.971e^-4	0.983	START_GAINED Sdc UTR_5_PRIME Sdc INTRON Sdc
2L	14629704	2L_14629704_SNP [dm3] 2L_14629704_SNP [dm6]	A	G	2.974e^-4	0.983	INTRON osp
3R	14620235	3R_14620235_SNP [dm3] 3R_18794513_SNP [dm6]	C	A	2.975e^-4	0.983	UPSTREAM CG7720 INTRON CG7720
X	1822282	X_1822282_SNP [dm3] X_1928249_SNP [dm6]	C	T	2.977e^-4	0.983	UTR_5_PRIME CG11596 UPSTREAM CG11596 DOWNSTREAM Ocrl INTRON CG11596	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	13298569	2R_13298569_SNP [dm3] 2R_17411064_SNP [dm6]	T	G	2.978e^-4	0.983	UPSTREAM CG30101 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13298570	2R_13298570_SNP [dm3] 2R_17411065_SNP [dm6]	T	G	2.978e^-4	0.983	UPSTREAM CG30101 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11875795	3L_11875795_SNP [dm3] 3L_11882695_SNP [dm6]	G	A	2.984e^-4	0.983	SYNONYMOUS_CODING CCDC151 INTRON CG44837
X	12572781	X_12572781_SNP [dm3] X_12678748_SNP [dm6]	A	G	2.988e^-4	0.983	SYNONYMOUS_CODING Tis11
X	4242813	X_4242813_SNP [dm3] X_4348780_SNP [dm6]	A	T	2.989e^-4	0.983	INTRON norpA
3L	9297965	3L_9297965_SNP [dm3] 3L_9304865_SNP [dm6]	T	C	2.992e^-4	0.983	INTERGENIC
3L	4392461	3L_4392461_SNP [dm3] 3L_4392461_SNP [dm6]	T	G	2.993e^-4	0.983	INTRON slow
3R	7869990	3R_7869990_SNP [dm3] 3R_12044268_SNP [dm6]	C	G	3.000e^-4	0.983	DOWNSTREAM CG14736 INTERGENIC
2R	11827753	2R_11827753_DEL [dm3] 2R_15940248_DEL [dm6]	TAT	T	3.006e^-4	0.983	UPSTREAM Mlf DOWNSTREAM CG8299 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19315153	3R_19315153_SNP [dm3] 3R_23489431_SNP [dm6]	T	A	3.009e^-4	0.983	DOWNSTREAM Ir94h INTERGENIC
2L	16397724	2L_16397724_SNP [dm3] 2L_16397724_SNP [dm6]	A	T	3.021e^-4	0.983	INTERGENIC
3R	12908911	3R_12908911_SNP [dm3] 3R_17083189_SNP [dm6]	G	C	3.026e^-4	0.983	NON_SYNONYMOUS_CODING kuk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7636452	2L_7636452_SNP [dm3] 2L_7636452_SNP [dm6]	G	A	3.028e^-4	0.983	UPSTREAM CR44800 EXON CR44799	TF binding site BDTNP1_TFBS_twi
3L	16608722	3L_16608722_SNP [dm3] 3L_16615622_SNP [dm6]	A	T	3.038e^-4	0.983	UPSTREAM Mo25 DOWNSTREAM Abl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2715027	2R_2715027_SNP [dm3] 2R_6827522_SNP [dm6]	C	T	3.045e^-4	0.983	UPSTREAM CG15236 INTERGENIC
3R	26034793	3R_26034793_SNP [dm3] 3R_30209071_SNP [dm6]	A	C	3.052e^-4	0.983	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	17025517	X_17025517_SNP [dm3] X_17131484_SNP [dm6]	T	C	3.059e^-4	0.983	INTRON CG5004
2L	17049337	2L_17049337_SNP [dm3] 2L_17049337_SNP [dm6]	A	G	3.068e^-4	0.983	INTERGENIC
X	14734090	X_14734090_SNP [dm3] X_14840057_SNP [dm6]	T	C	3.070e^-4	0.983	UTR_5_PRIME Flo2 UPSTREAM CG32590 INTRON Flo2	TF binding site BDTNP1_TFBS_dl
2L	7150653	2L_7150653_SNP [dm3] 2L_7150653_SNP [dm6]	G	A	3.076e^-4	0.983	INTRON Pvf3
X	12021676	X_12021676_SNP [dm3] X_12127643_SNP [dm6]	C	T	3.077e^-4	0.983	UPSTREAM Ten-a INTRON Ten-a
X	4477321	X_4477321_SNP [dm3] X_4583288_SNP [dm6]	T	A	3.082e^-4	0.983	INTRON CR32773
2L	8884913	2L_8884913_SNP [dm3] 2L_8884913_SNP [dm6]	G	C	3.086e^-4	0.983	INTERGENIC
3R	15058172	3R_15058172_SNP [dm3] 3R_19232450_SNP [dm6]	A	G	3.094e^-4	0.983	SYNONYMOUS_CODING unc79
2L	16363210	2L_16363210_SNP [dm3] 2L_16363210_SNP [dm6]	C	T	3.107e^-4	0.983	INTERGENIC
3L	394512	3L_394512_SNP [dm3] 3L_394512_SNP [dm6]	A	C	3.109e^-4	0.983	DOWNSTREAM CR43969 INTERGENIC
3L	5291689	3L_5291689_SNP [dm3] 3L_5298589_SNP [dm6]	T	C	3.111e^-4	0.983	INTERGENIC
X	7466270	X_7466270_SNP [dm3] X_7572237_SNP [dm6]	A	C	3.115e^-4	0.983	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	23480555	3R_23480555_SNP [dm3] 3R_27654833_SNP [dm6]	T	A	3.115e^-4	0.983	INTRON tau	TF binding site mE1_TFBS_inv
3R	23480563	3R_23480563_SNP [dm3] 3R_27654841_SNP [dm6]	G	A	3.115e^-4	0.983	INTRON tau	TF binding site mE1_TFBS_inv
2R	14999179	2R_14999179_SNP [dm3] 2R_19111674_SNP [dm6]	T	G	3.117e^-4	0.983	INTRON 5-HT1A
3L	10799918	3L_10799918_SNP [dm3] 3L_10806818_SNP [dm6]	C	A	3.130e^-4	0.983	UPSTREAM CR44347 INTERGENIC
X	5096068	X_5096068_SNP [dm3] X_5202035_SNP [dm6]	G	T	3.137e^-4	0.983	INTRON rg & 1 other
X	21470976	X_21470976_SNP [dm3] X_21599949_SNP [dm6]	G	A	3.139e^-4	0.983	DOWNSTREAM CG14476 INTERGENIC
2L	9212178	2L_9212178_SNP [dm3] 2L_9212178_SNP [dm6]	C	T	3.163e^-4	0.983	INTRON tai
3L	683574	3L_683574_SNP [dm3] 3L_683574_SNP [dm6]	G	T	3.165e^-4	0.983	NON_SYNONYMOUS_CODING ebd1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3R	14655427	3R_14655427_SNP [dm3] 3R_18829705_SNP [dm6]	A	T	3.176e^-4	0.983	INTRON CG18208
2R	12087641	2R_12087641_SNP [dm3] 2R_16200136_SNP [dm6]	C	T	3.179e^-4	0.983	SYNONYMOUS_CODING shark DOWNSTREAM CG42837 & 1 other	TF binding site mE1_TFBS_chinmo
2L	1450851	2L_1450851_SNP [dm3] 2L_1450851_SNP [dm6]	C	G	3.182e^-4	0.983	INTERGENIC
2L	7924461	2L_7924461_SNP [dm3] 2L_7924461_SNP [dm6]	C	T	3.193e^-4	0.983	INTRON Snoo
2L	777326	2L_777326_SNP [dm3] 2L_777326_SNP [dm6]	G	A	3.199e^-4	0.983	DOWNSTREAM CG13946 INTERGENIC	TF binding site mE1_TFBS_inv
3R	17920035	3R_17920035_SNP [dm3] 3R_22094313_SNP [dm6]	A	G	3.208e^-4	0.983	INTRON CG5778
2L	6301379	2L_6301379_SNP [dm3] 2L_6301379_SNP [dm6]	T	C	3.231e^-4	0.983	NON_SYNONYMOUS_CODING Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16426623	3R_16426623_SNP [dm3] 3R_20600901_SNP [dm6]	A	G	3.233e^-4	0.983	INTRON bon	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20395226	X_20395226_SNP [dm3] X_20524199_SNP [dm6]	C	A	3.234e^-4	0.983	START_GAINED Tak1 UTR_5_PRIME Tak1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	5764579	3L_5764579_SNP [dm3] 3L_5771479_SNP [dm6]	T	C	3.238e^-4	0.983	UTR_5_PRIME scny INTRON scny	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	16590083	2R_16590083_SNP [dm3] 2R_20702578_SNP [dm6]	T	G	3.242e^-4	0.983	INTRON dpr
3L	11875853	3L_11875853_SNP [dm3] 3L_11882753_SNP [dm6]	G	C	3.244e^-4	0.983	INTRON CG44837 & 1 other
3L	15390006	3L_15390006_SNP [dm3] 3L_15396906_SNP [dm6]	C	A	3.258e^-4	0.983	INTERGENIC
X	18237799	X_18237799_SNP [dm3] X_18343766_SNP [dm6]	T	C	3.259e^-4	0.983	INTRON CG6123	TF binding site mE1_TFBS_chinmo
X	4375072	X_4375072_SNP [dm3] X_4481039_SNP [dm6]	C	A	3.273e^-4	0.983	INTRON CR32773 & 1 other
2L	1375801	2L_1375801_SNP [dm3] 2L_1375801_SNP [dm6]	A	G	3.281e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2219597	X_2219597_SNP [dm3] X_2325564_SNP [dm6]	A	G	3.286e^-4	0.983	SYNONYMOUS_CODING CG14050 INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9352608	3L_9352608_DEL [dm3] 3L_9359508_DEL [dm6]	TCCTGGTGT	T	3.286e^-4	0.983	UTR_3_PRIME CG32039 UPSTREAM UGP & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3L	1870597	3L_1870597_SNP [dm3] 3L_1870597_SNP [dm6]	C	A	3.296e^-4	0.983	NON_SYNONYMOUS_CODING CG13924 DOWNSTREAM dre4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7292533	2R_7292533_SNP [dm3] 2R_11405028_SNP [dm6]	A	G	3.298e^-4	0.983	UPSTREAM CG7759 DOWNSTREAM tRNA:CR45107 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12615923	3R_12615923_SNP [dm3] 3R_16790201_SNP [dm6]	C	T	3.309e^-4	0.983	DOWNSTREAM Glut3 INTERGENIC	TF binding site mE1_TFBS_cad
2R	16121450	2R_16121450_SNP [dm3] 2R_20233945_SNP [dm6]	C	T	3.315e^-4	0.983	SYNONYMOUS_CODING CG11044
2R	17403730	2R_17403730_SNP [dm3] 2R_21516225_SNP [dm6]	C	T	3.329e^-4	0.983	SYNONYMOUS_CODING MESK2 DOWNSTREAM CG10494
3L	15194561	3L_15194561_SNP [dm3] 3L_15201461_SNP [dm6]	T	A	3.330e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16165953	2R_16165953_SNP [dm3] 2R_20278448_SNP [dm6]	A	T	3.331e^-4	0.983	SYNONYMOUS_CODING CG9143 DOWNSTREAM CG9090	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17563636	3R_17563636_SNP [dm3] 3R_21737914_SNP [dm6]	C	T	3.335e^-4	0.983	UPSTREAM CG42870 DOWNSTREAM CG34034 INTERGENIC
3R	22283714	3R_22283714_SNP [dm3] 3R_26457992_SNP [dm6]	T	C	3.337e^-4	0.983	UPSTREAM CG14238 DOWNSTREAM CG14237 INTERGENIC
3R	24994432	3R_24994432_SNP [dm3] 3R_29168710_SNP [dm6]	G	A	3.341e^-4	0.983	INTRON CG11898
X	12021503	X_12021503_SNP [dm3] X_12127470_SNP [dm6]	T	A	3.350e^-4	0.983	UPSTREAM Ten-a INTRON Ten-a
2L	12205735	2L_12205735_SNP [dm3] 2L_12205735_SNP [dm6]	A	T	3.362e^-4	0.983	UPSTREAM aret INTRON aret
X	21470989	X_21470989_SNP [dm3] X_21599962_SNP [dm6]	A	G	3.365e^-4	0.983	DOWNSTREAM CG14476 INTERGENIC
X	4477323	X_4477323_SNP [dm3] X_4583290_SNP [dm6]	T	A	3.377e^-4	0.983	INTRON CR32773
3R	20600166	3R_20600166_SNP [dm3] 3R_24774444_SNP [dm6]	A	G	3.377e^-4	0.983	INTRON CG42331
3L	22538023	3L_22538023_SNP [dm3] 3L_22544923_SNP [dm6]	C	A	3.383e^-4	0.983	INTERGENIC
3L	11897675	3L_11897675_SNP [dm3] 3L_11904575_SNP [dm6]	G	A	3.383e^-4	0.983	INTRON CG44837
3L	394508	3L_394508_INS [dm3] 3L_394508_INS [dm6]	A	AT	3.403e^-4	0.983	DOWNSTREAM CR43969 INTERGENIC
3R	10172068	3R_10172068_SNP [dm3] 3R_14346346_SNP [dm6]	A	G	3.407e^-4	0.983	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5027949	2L_5027949_SNP [dm3] 2L_5027949_SNP [dm6]	G	A	3.411e^-4	0.983	UPSTREAM vkg INTRON vkg	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	13809649	X_13809649_SNP [dm3] X_13915616_SNP [dm6]	T	C	3.417e^-4	0.983	INTRON mamo
3R	10995087	3R_10995087_SNP [dm3] 3R_15169365_SNP [dm6]	G	C	3.420e^-4	0.983	INTRON Gyc88E
3L	3786596	3L_3786596_SNP [dm3] 3L_3786596_SNP [dm6]	A	T	3.423e^-4	0.983	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	3325669	2L_3325669_SNP [dm3] 2L_3325669_SNP [dm6]	A	T	3.427e^-4	0.983	INTRON CG33281
3L	2603703	3L_2603703_SNP [dm3] 3L_2603703_SNP [dm6]	C	G	3.430e^-4	0.983	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16590023	2R_16590023_SNP [dm3] 2R_20702518_SNP [dm6]	T	C	3.436e^-4	0.983	INTRON dpr
2L	8389803	2L_8389803_DEL [dm3] 2L_8389803_DEL [dm6]	AA	A	3.437e^-4	0.983	UPSTREAM CG42819 DOWNSTREAM CG13384 & 1 other EXON snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi
2L	9666376	2L_9666376_SNP [dm3] 2L_9666376_SNP [dm6]	A	G	3.439e^-4	0.983	INTERGENIC
2R	19375747	2R_19375747_SNP [dm3] 2R_23488224_SNP [dm6]	A	G	3.441e^-4	0.983	INTRON CG43795
3L	2053202	3L_2053202_SNP [dm3] 3L_2053202_SNP [dm6]	C	T	3.443e^-4	0.983	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9133262	2R_9133262_DEL [dm3] 2R_13245757_DEL [dm6]	CCGTC	C	3.452e^-4	0.983	UPSTREAM CR45278 & 1 other INTERGENIC
3L	23860485	3L_23860485_SNP [dm3] 3L_23867385_SNP [dm6]	T	C	3.460e^-4	0.983	INTRON CG40470	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3L	3203124	3L_3203124_SNP [dm3] 3L_3203124_SNP [dm6]	T	C	3.466e^-4	0.983	UTR_5_PRIME CG32271 DOWNSTREAM CG33159 INTRON gry	TF binding site mE1_TFBS_chinmo
X	2219589	X_2219589_SNP [dm3] X_2325556_SNP [dm6]	A	G	3.471e^-4	0.983	SYNONYMOUS_CODING CG14050 INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15444103	2R_15444103_INS [dm3] 2R_19556598_INS [dm6]	C	CCT	3.475e^-4	0.983	INTRON sm
3L	22523831	3L_22523831_SNP [dm3] 3L_22530731_SNP [dm6]	G	A	3.478e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	3159894	2L_3159894_SNP [dm3] 2L_3159894_SNP [dm6]	T	A	3.481e^-4	0.983	UPSTREAM gkt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	17358834	2R_17358834_SNP [dm3] 2R_21471329_SNP [dm6]	C	A	3.485e^-4	0.983	INTRON Sdc
2R	5653679	2R_5653679_SNP [dm3] 2R_9766174_SNP [dm6]	A	T	3.488e^-4	0.983	UPSTREAM CR44205 DOWNSTREAM CG1688 & 1 other INTERGENIC
2R	14698786	2R_14698786_SNP [dm3] 2R_18811281_SNP [dm6]	T	C	3.496e^-4	0.983	INTRON CG15096
3R	13105192	3R_13105192_SNP [dm3] 3R_17279470_SNP [dm6]	T	A	3.502e^-4	0.983	INTERGENIC
3L	2546486	3L_2546486_SNP [dm3] 3L_2546486_SNP [dm6]	A	T	3.506e^-4	0.983	INTRON Spn
2R	19632579	2R_19632579_SNP [dm3] 2R_23745056_SNP [dm6]	G	A	3.508e^-4	0.983	INTRON egl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_sens
3R	16521700	3R_16521700_SNP [dm3] 3R_20695978_SNP [dm6]	A	T	3.511e^-4	0.983	INTRON Oamb
2L	7150656	2L_7150656_SNP [dm3] 2L_7150656_SNP [dm6]	C	T	3.511e^-4	0.983	INTRON Pvf3
3R	23480575	3R_23480575_SNP [dm3] 3R_27654853_SNP [dm6]	T	G	3.512e^-4	0.983	INTRON tau	TF binding site mE1_TFBS_inv
3R	5696879	3R_5696879_SNP [dm3] 3R_9871157_SNP [dm6]	C	G	3.514e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_sens
3R	21096564	3R_21096564_SNP [dm3] 3R_25270842_SNP [dm6]	C	T	3.524e^-4	0.983	SYNONYMOUS_CODING CG11889 UTR_5_PRIME CG11891 UPSTREAM CR45214 DOWNSTREAM CR13656
3R	24972075	3R_24972075_SNP [dm3] 3R_29146353_SNP [dm6]	A	C	3.533e^-4	0.983	NON_SYNONYMOUS_CODING CG14511 DOWNSTREAM CG14516 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	10126908	3L_10126908_SNP [dm3] 3L_10133808_SNP [dm6]	G	C	3.534e^-4	0.983	INTRON dpr6
X	5056494	X_5056494_SNP [dm3] X_5162461_SNP [dm6]	G	C	3.538e^-4	0.983	INTRON rg & 1 other
2L	2293478	2L_2293478_SNP [dm3] 2L_2293478_SNP [dm6]	T	A	3.538e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25100567	3R_25100567_DEL [dm3] 3R_29274845_DEL [dm6]	AC	T	3.541e^-4	0.983	INTERGENIC	regulatory region REDfly_CRMs
3L	13367702	3L_13367702_SNP [dm3] 3L_13374602_SNP [dm6]	C	T	3.546e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7654732	3L_7654732_SNP [dm3] 3L_7661632_SNP [dm6]	G	T	3.546e^-4	0.983	INTRON CG32373 & 2 others
2L	7493366	2L_7493366_SNP [dm3] 2L_7493366_SNP [dm6]	A	T	3.557e^-4	0.983	INTRON Ziz
2L	920928	2L_920928_SNP [dm3] 2L_920928_SNP [dm6]	A	G	3.563e^-4	0.983	INTERGENIC
2L	964004	2L_964004_SNP [dm3] 2L_964004_SNP [dm6]	G	T	3.564e^-4	0.983	INTERGENIC
3R	19562131	3R_19562131_SNP [dm3] 3R_23736409_SNP [dm6]	T	C	3.584e^-4	0.983	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8443771	3L_8443771_SNP [dm3] 3L_8450671_SNP [dm6]	G	T	3.587e^-4	0.983	START_GAINED Gug UTR_5_PRIME Gug INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	936735	2L_936735_SNP [dm3] 2L_936735_SNP [dm6]	A	G	3.599e^-4	0.983	INTRON CG4341
X	12940909	X_12940909_SNP [dm3] X_13046876_SNP [dm6]	T	C	3.601e^-4	0.983	INTRON rad
3L	4351950	3L_4351950_SNP [dm3] 3L_4351950_SNP [dm6]	C	A	3.609e^-4	0.983	INTRON Cip4
3L	13385094	3L_13385094_SNP [dm3] 3L_13391994_SNP [dm6]	C	G	3.615e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17913311	2R_17913311_DEL [dm3] 2R_22025806_DEL [dm6]	AATGACCTGTACA...	A	3.616e^-4	0.983	INTRON CG34370
X	8000140	X_8000140_SNP [dm3] X_8106107_SNP [dm6]	T	C	3.623e^-4	0.983	UPSTREAM Gclc INTRON Gclc	TF binding site mE1_TFBS_inv
2L	8989513	2L_8989513_SNP [dm3] 2L_8989513_SNP [dm6]	G	C	3.628e^-4	0.983	UTR_5_PRIME rost UPSTREAM rost
2L	18974849	2L_18974849_DEL [dm3] 2L_18974849_DEL [dm6]	TAAGT	T	3.632e^-4	0.983	UPSTREAM CG10639 INTRON CG10431	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19951325	3R_19951325_SNP [dm3] 3R_24125603_SNP [dm6]	C	G	3.633e^-4	0.983	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17031897	3R_17031897_SNP [dm3] 3R_21206175_SNP [dm6]	G	C	3.645e^-4	0.983	INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5117993	2L_5117993_SNP [dm3] 2L_5117993_SNP [dm6]	C	T	3.654e^-4	0.983	INTRON Msp300
3R	20993871	3R_20993871_SNP [dm3] 3R_25168149_SNP [dm6]	G	T	3.666e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	3518489	X_3518489_DEL [dm3] X_3624456_DEL [dm6]	TTG	T	3.667e^-4	0.983	INTRON AstA-R1
X	21043615	X_21043615_SNP [dm3] X_21172588_SNP [dm6]	A	C	3.672e^-4	0.983	INTERGENIC	transposable element FlyBase
3R	14618653	3R_14618653_SNP [dm3] 3R_18792931_SNP [dm6]	T	A	3.679e^-4	0.983	UPSTREAM CG7720 INTRON CG7720
2L	1201959	2L_1201959_SNP [dm3] 2L_1201959_SNP [dm6]	T	C	3.694e^-4	0.983	DOWNSTREAM CG5011 INTERGENIC
X	9119160	X_9119160_SNP [dm3] X_9225127_SNP [dm6]	T	A	3.698e^-4	0.983	UPSTREAM CG15370 INTERGENIC
2L	22017677	2L_22017677_SNP [dm3] 2L_22017677_SNP [dm6]	G	A	3.708e^-4	0.983	DOWNSTREAM CG31693 INTERGENIC
2L	499522	2L_499522_SNP [dm3] 2L_499522_SNP [dm6]	A	C	3.719e^-4	0.983	INTRON ush
3L	9225504	3L_9225504_SNP [dm3] 3L_9232404_SNP [dm6]	A	G	3.722e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10625062	3L_10625062_SNP [dm3] 3L_10631962_SNP [dm6]	T	C	3.722e^-4	0.983	SYNONYMOUS_CODING hay INTRON CG34001	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	23688632	3R_23688632_INS [dm3] 3R_27862910_INS [dm6]	T	TTGAAGTCCGGACTT...	3.724e^-4	0.983	INTRON CG34353
X	10448697	X_10448697_SNP [dm3] X_10554664_SNP [dm6]	C	G	3.725e^-4	0.983	INTRON spri
3L	682852	3L_682852_SNP [dm3] 3L_682852_SNP [dm6]	T	A	3.732e^-4	0.983	UPSTREAM CG3386 DOWNSTREAM ebd1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3836899	3L_3836899_SNP [dm3] 3L_3836899_SNP [dm6]	G	A	3.748e^-4	0.983	NON_SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11888179	3R_11888179_SNP [dm3] 3R_16062457_SNP [dm6]	A	G	3.751e^-4	0.983	SYNONYMOUS_CODING CG10185	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17396979	2R_17396979_SNP [dm3] 2R_21509474_SNP [dm6]	T	C	3.762e^-4	0.983	INTRON MESK2
X	15421596	X_15421596_SNP [dm3] X_15527563_SNP [dm6]	C	T	3.764e^-4	0.983	INTRON Ac13E
2L	10186159	2L_10186159_SNP [dm3] 2L_10186159_SNP [dm6]	G	A	3.771e^-4	0.983	INTRON Sur
3R	7725523	3R_7725523_SNP [dm3] 3R_11899801_SNP [dm6]	C	T	3.775e^-4	0.983	INTRON Cad87A	TF binding site mE1_TFBS_cad
2R	5268217	2R_5268217_SNP [dm3] 2R_9380712_SNP [dm6]	A	C	3.783e^-4	0.983	INTRON CG13954
X	5005243	X_5005243_SNP [dm3] X_5111210_SNP [dm6]	C	A	3.786e^-4	0.983	INTRON rg & 1 other
2R	11717940	2R_11717940_SNP [dm3] 2R_15830435_SNP [dm6]	A	G	3.786e^-4	0.983	SYNONYMOUS_CODING Poxn INTRON tun	regulatory region REDfly_CRMs
2L	1199617	2L_1199617_SNP [dm3] 2L_1199617_SNP [dm6]	A	G	3.786e^-4	0.983	UTR_3_PRIME CG43348 UPSTREAM CG43349 & 1 other
X	21862174	X_21862174_SNP [dm3] X_22460338_SNP [dm6]	C	T	3.790e^-4	0.983	INTRON CG14619
2L	18117288	2L_18117288_SNP [dm3] 2L_18117288_SNP [dm6]	G	A	3.800e^-4	0.983	INTERGENIC
3L	14958044	3L_14958044_SNP [dm3] 3L_14964944_SNP [dm6]	A	C	3.819e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7834406	3L_7834406_SNP [dm3] 3L_7841306_SNP [dm6]	T	C	3.829e^-4	0.983	INTRON Pdp1	regulatory region REDfly_CRMs
3R	20402884	3R_20402884_SNP [dm3] 3R_24577162_SNP [dm6]	A	T	3.832e^-4	0.983	INTRON CG13624	TF binding site mE1_TFBS_Trl
2R	10492991	2R_10492991_SNP [dm3] 2R_14605486_SNP [dm6]	T	C	3.839e^-4	0.983	UPSTREAM CG12868 DOWNSTREAM CG33469 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	15021298	2L_15021298_SNP [dm3] 2L_15021298_SNP [dm6]	A	G	3.840e^-4	0.983	SYNONYMOUS_CODING GABA-B-R1
X	12675849	X_12675849_SNP [dm3] X_12781816_SNP [dm6]	C	T	3.868e^-4	0.983	INTRON CG32647
2R	3732873	2R_3732873_SNP [dm3] 2R_7845368_SNP [dm6]	G	A	3.873e^-4	0.983	INTRON Dgk
3L	19351252	3L_19351252_SNP [dm3] 3L_19358152_SNP [dm6]	A	T	3.876e^-4	0.983	INTRON CG32206	TF binding site BDTNP1_TFBS_twi
X	3324729	X_3324729_SNP [dm3] X_3430696_SNP [dm6]	C	T	3.888e^-4	0.983	INTRON CR44999 & 1 other
2L	10669091	2L_10669091_SNP [dm3] 2L_10669091_SNP [dm6]	A	G	3.889e^-4	0.983	INTRON CG31871
3R	5349596	3R_5349596_SNP [dm3] 3R_9523874_SNP [dm6]	A	G	3.895e^-4	0.983	INTRON CG8176	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6501815	2L_6501815_SNP [dm3] 2L_6501815_SNP [dm6]	A	C	3.908e^-4	0.983	INTRON CG31637
2R	14982796	2R_14982796_SNP [dm3] 2R_19095291_SNP [dm6]	G	C	3.909e^-4	0.983	NON_SYNONYMOUS_CODING Ir56a INTRON 5-HT1A
2L	2799341	2L_2799341_SNP [dm3] 2L_2799341_SNP [dm6]	T	A	3.913e^-4	0.983	INTRON Syt1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19516245	2R_19516245_SNP [dm3] 2R_23628722_SNP [dm6]	G	T	3.919e^-4	0.983	INTERGENIC
3R	7824414	3R_7824414_SNP [dm3] 3R_11998692_SNP [dm6]	A	G	3.922e^-4	0.983	UPSTREAM Ect3 INTRON Tk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5905348	X_5905348_SNP [dm3] X_6011315_SNP [dm6]	C	T	3.924e^-4	0.983	INTRON mab-21	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	17388864	2L_17388864_SNP [dm3] 2L_17388864_SNP [dm6]	T	A	3.928e^-4	0.983	UPSTREAM CLIP-190 INTRON CLIP-190
3L	11244596	3L_11244596_SNP [dm3] 3L_11251496_SNP [dm6]	A	T	3.928e^-4	0.983	UPSTREAM CR44716 & 1 other DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3R	26582050	3R_26582050_INS [dm3] 3R_30756328_INS [dm6]	T	TGTTATATATTTAAAACACA...	3.931e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6173895	2L_6173895_SNP [dm3] 2L_6173895_SNP [dm6]	T	A	3.933e^-4	0.983	INTERGENIC
3R	22910616	3R_22910616_DEL [dm3] 3R_27084894_DEL [dm6]	TTA	GG	3.934e^-4	0.983	INTRON Cpr97Ea
3L	11875851	3L_11875851_SNP [dm3] 3L_11882751_SNP [dm6]	T	C	3.940e^-4	0.983	INTRON CG44837 & 1 other
3L	4349201	3L_4349201_SNP [dm3] 3L_4349201_SNP [dm6]	A	C	3.942e^-4	0.983	INTRON Cip4
3L	14958711	3L_14958711_SNP [dm3] 3L_14965611_SNP [dm6]	A	T	3.943e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3601034	2L_3601034_SNP [dm3] 2L_3601034_SNP [dm6]	T	C	3.945e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_sens
3R	12616344	3R_12616344_SNP [dm3] 3R_16790622_SNP [dm6]	A	T	3.954e^-4	0.983	DOWNSTREAM Glut3 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13584508	2R_13584508_DEL [dm3] 2R_17697003_DEL [dm6]	AA	A	3.963e^-4	0.983	UPSTREAM CR45146 INTRON rdgBbeta
3R	16350416	3R_16350416_SNP [dm3] 3R_20524694_SNP [dm6]	A	T	3.964e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_inv
2L	15756327	2L_15756327_DEL [dm3] 2L_15756327_DEL [dm6]	ATTA	A	3.964e^-4	0.983	UTR_3_PRIME Gli DOWNSTREAM l_2_35Df
X	20398556	X_20398556_SNP [dm3] X_20527529_SNP [dm6]	A	C	3.971e^-4	0.983	UPSTREAM CG42579 INTERGENIC
3L	3565322	3L_3565322_SNP [dm3] 3L_3565322_SNP [dm6]	C	T	3.984e^-4	0.983	INTRON Eip63E
X	8990784	X_8990784_SNP [dm3] X_9096751_SNP [dm6]	A	G	3.985e^-4	0.983	INTRON CG7766
2L	5212897	2L_5212897_SNP [dm3] 2L_5212897_SNP [dm6]	A	G	3.998e^-4	0.983	SYNONYMOUS_CODING CG7742 DOWNSTREAM Cyp28d1	TF binding site mE1_TFBS_cad
3R	22828538	3R_22828538_SNP [dm3] 3R_27002816_SNP [dm6]	C	T	4.002e^-4	0.983	UTR_3_PRIME CG31077 DOWNSTREAM CG6296 INTRON RYa-R
3R	24099073	3R_24099073_SNP [dm3] 3R_28273351_SNP [dm6]	A	G	4.003e^-4	0.983	INTERGENIC
2L	6553586	2L_6553586_SNP [dm3] 2L_6553586_SNP [dm6]	A	C	4.004e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22283733	3R_22283733_INS [dm3] 3R_26458011_INS [dm6]	T	TA	4.004e^-4	0.983	UPSTREAM CG14238 DOWNSTREAM CG14237 INTERGENIC
2L	6173900	2L_6173900_SNP [dm3] 2L_6173900_SNP [dm6]	T	A	4.004e^-4	0.983	INTERGENIC
X	11655430	X_11655430_SNP [dm3] X_11761397_SNP [dm6]	A	T	4.010e^-4	0.983	INTRON m	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	21576743	3R_21576743_SNP [dm3] 3R_25751021_SNP [dm6]	C	G	4.013e^-4	0.983	INTRON LpR1
3R	17670361	3R_17670361_SNP [dm3] 3R_21844639_SNP [dm6]	G	C	4.018e^-4	0.983	NON_SYNONYMOUS_CODING Gr93c UPSTREAM Gr93b & 1 other DOWNSTREAM Gr93d	TF binding site mE1_TFBS_HSA
3L	1561971	3L_1561971_SNP [dm3] 3L_1561971_SNP [dm6]	A	G	4.036e^-4	0.983	SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	14629787	2L_14629787_SNP [dm3] 2L_14629787_SNP [dm6]	A	T	4.044e^-4	0.983	INTRON osp
2L	14132681	2L_14132681_SNP [dm3] 2L_14132681_SNP [dm6]	T	C	4.046e^-4	0.983	INTERGENIC
3R	20412514	3R_20412514_SNP [dm3] 3R_24586792_SNP [dm6]	T	G	4.049e^-4	0.983	INTRON mld	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	7584598	X_7584598_DEL [dm3] X_7690565_DEL [dm6]	GG	G	4.050e^-4	0.983	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	4509886	X_4509886_SNP [dm3] X_4615853_SNP [dm6]	A	G	4.051e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11887414	3L_11887414_SNP [dm3] 3L_11894314_SNP [dm6]	G	C	4.052e^-4	0.983	INTRON CG44837
3R	26106724	3R_26106724_SNP [dm3] 3R_30281002_SNP [dm6]	T	A	4.061e^-4	0.983	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21650181	3R_21650181_SNP [dm3] 3R_25824459_SNP [dm6]	G	A	4.066e^-4	0.983	EXON CR44949	insulator Insulator_Class_II.mE01
3L	13368204	3L_13368204_SNP [dm3] 3L_13375104_SNP [dm6]	A	G	4.080e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_HSA
X	12020032	X_12020032_INS [dm3] X_12125999_INS [dm6]	C	CACA	4.086e^-4	0.983	INTRON Ten-a
3R	26245244	3R_26245244_INS [dm3] 3R_30419522_INS [dm6]	G	GTTTACTAG	4.086e^-4	0.983	UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 INTRON CG42740 & 1 other	TF binding site mE1_TFBS_inv
3R	19684751	3R_19684751_SNP [dm3] 3R_23859029_SNP [dm6]	T	A	4.093e^-4	0.983	DOWNSTREAM snRNA:U1:95Ca INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3L	5326274	3L_5326274_SNP [dm3] 3L_5333174_SNP [dm6]	T	G	4.099e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	6165391	X_6165391_SNP [dm3] X_6271358_SNP [dm6]	C	T	4.100e^-4	0.983	SYNONYMOUS_CODING Spt6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7913330	3R_7913330_SNP [dm3] 3R_12087608_SNP [dm6]	C	G	4.101e^-4	0.983	INTRON CG14741
2L	12468012	2L_12468012_SNP [dm3] 2L_12468012_SNP [dm6]	A	G	4.103e^-4	0.983	INTRON bun	TF binding site mE1_TFBS_kn
X	5427463	X_5427463_SNP [dm3] X_5533430_SNP [dm6]	T	G	4.112e^-4	0.983	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17852853	2R_17852853_SNP [dm3] 2R_21965348_SNP [dm6]	A	T	4.117e^-4	0.983	INTRON ppk9
2L	18315758	2L_18315758_SNP [dm3] 2L_18315758_SNP [dm6]	G	A	4.123e^-4	0.983	INTERGENIC
2R	9115362	2R_9115362_SNP [dm3] 2R_13227857_SNP [dm6]	G	T	4.127e^-4	0.983	UTR_3_PRIME Dp DOWNSTREAM Pex13 & 1 other
3L	394497	3L_394497_MNP [dm3] 3L_394497_MNP [dm6]	AAAAGA	CCTCCT	4.133e^-4	0.983	DOWNSTREAM CR43969 INTERGENIC
3L	394503	3L_394503_INS [dm3] 3L_394503_INS [dm6]	A	ATC	4.133e^-4	0.983	DOWNSTREAM CR43969 INTERGENIC
3R	2458407	3R_2458407_SNP [dm3] 3R_6632685_SNP [dm6]	T	C	4.134e^-4	0.983	INTERGENIC
2R	6527900	2R_6527900_SNP [dm3] 2R_10640395_SNP [dm6]	A	C	4.162e^-4	0.983	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
2L	7573783	2L_7573783_SNP [dm3] 2L_7573783_SNP [dm6]	C	T	4.174e^-4	0.983	INTRON RapGAP1
2L	9289273	2L_9289273_SNP [dm3] 2L_9289273_SNP [dm6]	C	G	4.178e^-4	0.983	INTRON Ggamma30A
3L	22406971	3L_22406971_SNP [dm3] 3L_22413871_SNP [dm6]	T	G	4.185e^-4	0.983	INTERGENIC
3R	10412466	3R_10412466_SNP [dm3] 3R_14586744_SNP [dm6]	T	G	4.185e^-4	0.983	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	15047775	3L_15047775_DEL [dm3] 3L_15054675_DEL [dm6]	GATG	G	4.191e^-4	0.983	UPSTREAM CG13463 & 1 other INTRON Sytbeta
2R	15667558	2R_15667558_SNP [dm3] 2R_19780053_SNP [dm6]	C	A	4.204e^-4	0.983	INTERGENIC
3R	15196696	3R_15196696_SNP [dm3] 3R_19370974_SNP [dm6]	T	C	4.204e^-4	0.983	INTRON Ino80
3R	19900754	3R_19900754_SNP [dm3] 3R_24075032_SNP [dm6]	G	A	4.209e^-4	0.983	INTRON 4EHP
3R	20941821	3R_20941821_SNP [dm3] 3R_25116099_SNP [dm6]	T	G	4.235e^-4	0.983	INTRON CG31108
X	8364344	X_8364344_SNP [dm3] X_8470311_SNP [dm6]	C	T	4.245e^-4	0.983	UPSTREAM Cp7Fa INTRON CG33223
X	21466309	X_21466309_SNP [dm3] X_21595282_SNP [dm6]	G	T	4.268e^-4	0.983	INTERGENIC
2R	5654081	2R_5654081_SNP [dm3] 2R_9766576_SNP [dm6]	C	T	4.278e^-4	0.983	NON_SYNONYMOUS_CODING CG1688 EXON CR44205	TF binding site mE1_TFBS_cad
2L	7636443	2L_7636443_SNP [dm3] 2L_7636443_SNP [dm6]	G	C	4.280e^-4	0.983	SPLICE_SITE_ACCEPTOR CR44799 UPSTREAM CR44800 INTRON CR44799	TF binding site BDTNP1_TFBS_twi
3L	7651332	3L_7651332_SNP [dm3] 3L_7658232_SNP [dm6]	C	T	4.283e^-4	0.983	SYNONYMOUS_CODING Ank2 DOWNSTREAM CG44195 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad
3L	10795566	3L_10795566_SNP [dm3] 3L_10802466_SNP [dm6]	G	T	4.287e^-4	0.983	DOWNSTREAM CG12523 INTERGENIC
3L	3760276	3L_3760276_SNP [dm3] 3L_3760276_SNP [dm6]	G	T	4.297e^-4	0.983	INTRON CG32264
3L	4719140	3L_4719140_SNP [dm3] 3L_4719140_SNP [dm6]	A	T	4.300e^-4	0.983	INTRON RhoGEF64C
3R	22823034	3R_22823034_SNP [dm3] 3R_26997312_SNP [dm6]	C	T	4.303e^-4	0.983	UTR_5_PRIME RYa-R DOWNSTREAM TwdlC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10056801	2R_10056801_SNP [dm3] 2R_14169296_SNP [dm6]	G	T	4.312e^-4	0.983	UTR_5_PRIME CG18324 INTRON CG18324 EXON CR44368	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	15023396	3L_15023396_INS [dm3] 3L_15030296_INS [dm6]	A	ACGCA	4.314e^-4	0.983	INTRON Sytbeta
3L	7647641	3L_7647641_SNP [dm3] 3L_7654541_SNP [dm6]	A	G	4.320e^-4	0.983	UTR_5_PRIME CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl
3L	7651383	3L_7651383_SNP [dm3] 3L_7658283_SNP [dm6]	G	A	4.320e^-4	0.983	SYNONYMOUS_CODING Ank2 DOWNSTREAM CG44195 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad
X	3791169	X_3791169_SNP [dm3] X_3897136_SNP [dm6]	T	G	4.322e^-4	0.983	INTRON CG42541
3R	17750715	3R_17750715_SNP [dm3] 3R_21924993_SNP [dm6]	A	C	4.325e^-4	0.983	INTERGENIC
3L	10367709	3L_10367709_SNP [dm3] 3L_10374609_SNP [dm6]	T	A	4.329e^-4	0.983	INTERGENIC
2L	20873806	2L_20873806_SNP [dm3] 2L_20873806_SNP [dm6]	A	G	4.331e^-4	0.983	SYNONYMOUS_CODING sky UTR_3_PRIME CG43739 UPSTREAM CR44981	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	23003443	3R_23003443_SNP [dm3] 3R_27177721_SNP [dm6]	A	T	4.336e^-4	0.983	INTRON Ser	TF binding site mE1_TFBS_cad
3L	11240332	3L_11240332_SNP [dm3] 3L_11247232_SNP [dm6]	A	G	4.339e^-4	0.983	UPSTREAM CR44717 DOWNSTREAM CR44715 & 1 other EXON CR44714	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	7266546	3L_7266546_SNP [dm3] 3L_7273446_SNP [dm6]	T	C	4.340e^-4	0.983	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad
3L	5690355	3L_5690355_SNP [dm3] 3L_5697255_SNP [dm6]	A	G	4.348e^-4	0.983	NON_SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14633319	X_14633319_SNP [dm3] X_14739286_SNP [dm6]	C	T	4.351e^-4	0.983	INTRON NetB
2L	8391243	2L_8391243_SNP [dm3] 2L_8391243_SNP [dm6]	A	T	4.356e^-4	0.983	INTRON CG42820
2L	11375450	2L_11375450_SNP [dm3] 2L_11375450_SNP [dm6]	G	A	4.358e^-4	0.983	INTERGENIC	regulatory region REDfly_CRMs
3L	13367371	3L_13367371_SNP [dm3] 3L_13374271_SNP [dm6]	C	A	4.364e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19867165	X_19867165_SNP [dm3] X_19973132_SNP [dm6]	T	C	4.377e^-4	0.983	INTERGENIC
X	13921143	X_13921143_SNP [dm3] X_14027110_SNP [dm6]	C	T	4.381e^-4	0.983	INTERGENIC
3L	394507	3L_394507_SNP [dm3] 3L_394507_SNP [dm6]	G	C	4.381e^-4	0.983	DOWNSTREAM CR43969 INTERGENIC
X	4518101	X_4518101_SNP [dm3] X_4624068_SNP [dm6]	T	C	4.384e^-4	0.983	SYNONYMOUS_CODING peb	TF binding site mE1_TFBS_chinmo
2L	7493342	2L_7493342_SNP [dm3] 2L_7493342_SNP [dm6]	A	T	4.392e^-4	0.983	INTRON Ziz
3L	15053661	3L_15053661_SNP [dm3] 3L_15060561_SNP [dm6]	T	C	4.393e^-4	0.983	DOWNSTREAM CG13460 INTRON Sytbeta
3R	14623952	3R_14623952_SNP [dm3] 3R_18798230_SNP [dm6]	A	G	4.404e^-4	0.983	INTERGENIC
2L	17650880	2L_17650880_SNP [dm3] 2L_17650880_SNP [dm6]	C	T	4.404e^-4	0.983	INTRON CadN
3R	19561885	3R_19561885_SNP [dm3] 3R_23736163_SNP [dm6]	A	T	4.413e^-4	0.983	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	19964611	3R_19964611_SNP [dm3] 3R_24138889_SNP [dm6]	C	A	4.413e^-4	0.983	INTRON Npc2f	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19562079	3R_19562079_SNP [dm3] 3R_23736357_SNP [dm6]	A	G	4.429e^-4	0.983	INTRON Hmgcr	TF binding site mE1_TFBS_HSA
3R	12912980	3R_12912980_SNP [dm3] 3R_17087258_SNP [dm6]	G	T	4.443e^-4	0.983	SYNONYMOUS_CODING GckIII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10847383	X_10847383_SNP [dm3] X_10953350_SNP [dm6]	T	G	4.451e^-4	0.983	UPSTREAM Rab9Fb & 1 other INTRON Myo10A
2L	16457767	2L_16457767_SNP [dm3] 2L_16457767_SNP [dm6]	G	T	4.457e^-4	0.983	INTERGENIC	regulatory region REDfly_CRMs
2L	22079612	2L_22079612_SNP [dm3] 2L_22079612_SNP [dm6]	T	A	4.465e^-4	0.983	UPSTREAM ttm3 INTERGENIC
3L	1413069	3L_1413069_SNP [dm3] 3L_1413069_SNP [dm6]	A	T	4.481e^-4	0.983	NON_SYNONYMOUS_CODING CG9168 INTRON Ptp61F
3L	22540042	3L_22540042_SNP [dm3] 3L_22546942_SNP [dm6]	T	A	4.481e^-4	0.983	INTERGENIC
3L	10691025	3L_10691025_SNP [dm3] 3L_10697925_SNP [dm6]	A	C	4.482e^-4	0.983	INTERGENIC
3R	26369890	3R_26369890_SNP [dm3] 3R_30544168_SNP [dm6]	T	C	4.487e^-4	0.983	INTRON tmod
3L	3540894	3L_3540894_SNP [dm3] 3L_3540894_SNP [dm6]	G	C	4.488e^-4	0.983	INTRON Eip63E
2L	17388869	2L_17388869_SNP [dm3] 2L_17388869_SNP [dm6]	G	T	4.497e^-4	0.983	UPSTREAM CLIP-190 INTRON CLIP-190
2L	14473824	2L_14473824_SNP [dm3] 2L_14473824_SNP [dm6]	T	G	4.500e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	16800868	2L_16800868_SNP [dm3] 2L_16800868_SNP [dm6]	G	A	4.502e^-4	0.983	NON_SYNONYMOUS_CODING Ugt36Bc	TF binding site mE1_TFBS_cad
2L	2292753	2L_2292753_SNP [dm3] 2L_2292753_SNP [dm6]	C	T	4.510e^-4	0.983	INTERGENIC
2L	15275484	2L_15275484_SNP [dm3] 2L_15275484_SNP [dm6]	A	G	4.516e^-4	0.983	UPSTREAM UK114 INTERGENIC	TF binding site mE1_TFBS_inv
2L	7924465	2L_7924465_SNP [dm3] 2L_7924465_SNP [dm6]	C	T	4.521e^-4	0.983	INTRON Snoo
3L	5326996	3L_5326996_SNP [dm3] 3L_5333896_SNP [dm6]	C	T	4.522e^-4	0.983	UPSTREAM CR45742 INTERGENIC
3L	680659	3L_680659_INS [dm3] 3L_680659_INS [dm6]	T	TCTGTTTAGTTTAGTACACT...	4.525e^-4	0.983	UTR_3_PRIME CG3386 UPSTREAM CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	3225949	2L_3225949_SNP [dm3] 2L_3225949_SNP [dm6]	G	A	4.533e^-4	0.983	INTERGENIC
2L	14278150	2L_14278150_SNP [dm3] 2L_14278150_SNP [dm6]	A	T	4.543e^-4	0.983	DOWNSTREAM CG32971 INTRON wb
X	9213192	X_9213192_SNP [dm3] X_9319159_SNP [dm6]	G	A	4.556e^-4	0.983	UTR_5_PRIME c12.1 UPSTREAM c12.2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	8401876	3L_8401876_SNP [dm3] 3L_8408776_SNP [dm6]	G	A	4.557e^-4	0.983	SYNONYMOUS_CODING Oseg1
X	16229895	X_16229895_SNP [dm3] X_16335862_SNP [dm6]	T	C	4.561e^-4	0.983	UPSTREAM Dsp1 INTRON Dsp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D
2R	8332722	2R_8332722_SNP [dm3] 2R_12445217_SNP [dm6]	A	G	4.564e^-4	0.983	INTRON Dyb	TF binding site mE1_TFBS_chinmo
3L	5326275	3L_5326275_SNP [dm3] 3L_5333175_SNP [dm6]	G	T	4.566e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12615971	3R_12615971_SNP [dm3] 3R_16790249_SNP [dm6]	T	G	4.573e^-4	0.983	DOWNSTREAM Glut3 INTERGENIC	TF binding site mE1_TFBS_cad
X	18180174	X_18180174_SNP [dm3] X_18286141_SNP [dm6]	T	C	4.575e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1293301	3L_1293301_SNP [dm3] 3L_1293301_SNP [dm6]	C	T	4.589e^-4	0.983	SYNONYMOUS_CODING CG32333
2R	17775587	2R_17775587_INS [dm3] 2R_21888082_INS [dm6]	T	TGT	4.596e^-4	0.983	INTRON Fili
3L	2051371	3L_2051371_SNP [dm3] 3L_2051371_SNP [dm6]	C	T	4.600e^-4	0.983	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_sens
3L	21394718	3L_21394718_SNP [dm3] 3L_21401618_SNP [dm6]	C	G	4.601e^-4	0.983	INTRON rgn
3R	22832901	3R_22832901_SNP [dm3] 3R_27007179_SNP [dm6]	T	C	4.604e^-4	0.983	UPSTREAM CG6295 INTRON RYa-R	TF binding site mE1_TFBS_cad
3R	23688622	3R_23688622_SNP [dm3] 3R_27862900_SNP [dm6]	A	C	4.608e^-4	0.983	INTRON CG34353
X	21043592	X_21043592_SNP [dm3] X_21172565_SNP [dm6]	A	G	4.622e^-4	0.983	INTERGENIC	transposable element FlyBase
X	11239061	X_11239061_SNP [dm3] X_11345028_SNP [dm6]	T	G	4.624e^-4	0.983	UTR_3_PRIME CG1597 DOWNSTREAM CG34348
X	6635482	X_6635482_DEL [dm3] X_6741449_DEL [dm6]	CAA	C	4.627e^-4	0.983	DOWNSTREAM RpL17 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	5326289	3L_5326289_MNP [dm3] 3L_5333189_MNP [dm6]	AAC	TCA	4.640e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7491786	2L_7491786_INS [dm3] 2L_7491786_INS [dm6]	C	CAA	4.643e^-4	0.983	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	3223664	2L_3223664_SNP [dm3] 2L_3223664_SNP [dm6]	A	C	4.649e^-4	0.983	INTERGENIC
3L	8881669	3L_8881669_SNP [dm3] 3L_8888569_SNP [dm6]	T	A	4.650e^-4	0.983	UTR_5_PRIME CG43169 INTRON dally
2R	19020860	2R_19020860_SNP [dm3] 2R_23133337_SNP [dm6]	C	T	4.657e^-4	0.983	INTERGENIC
2R	16165945	2R_16165945_SNP [dm3] 2R_20278440_SNP [dm6]	T	A	4.670e^-4	0.983	NON_SYNONYMOUS_CODING CG9143 DOWNSTREAM CG9090	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2811712	3R_2811712_SNP [dm3] 3R_6985990_SNP [dm6]	T	A	4.672e^-4	0.983	INTRON Antp
3R	21772192	3R_21772192_SNP [dm3] 3R_25946470_SNP [dm6]	G	T	4.681e^-4	0.983	INTRON CCAP-R
3R	6496764	3R_6496764_SNP [dm3] 3R_10671042_SNP [dm6]	T	C	4.688e^-4	0.983	INTERGENIC
2L	7496084	2L_7496084_INS [dm3] 2L_7496084_INS [dm6]	T	TTCT	4.688e^-4	0.983	UTR_5_PRIME Ziz DOWNSTREAM Obp28a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	21556197	2L_21556197_SNP [dm3] 2L_21556197_SNP [dm6]	C	A	4.689e^-4	0.983	INTERGENIC
2R	19701782	2R_19701782_SNP [dm3] 2R_23814259_SNP [dm6]	C	A	4.695e^-4	0.983	INTRON CG4797 EXON CR44807	TF binding site mE1_TFBS_chinmo
2L	3321346	2L_3321346_SNP [dm3] 2L_3321346_SNP [dm6]	G	A	4.700e^-4	0.983	INTRON CG8837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3318264	2L_3318264_SNP [dm3] 2L_3318264_SNP [dm6]	T	A	4.701e^-4	0.983	SYNONYMOUS_CODING CG3326 DOWNSTREAM CG3277
3R	21094076	3R_21094076_SNP [dm3] 3R_25268354_SNP [dm6]	A	G	4.708e^-4	0.983	UPSTREAM CR13656 DOWNSTREAM RIOK2 EXON CR45214 & 1 other
2R	16528664	2R_16528664_SNP [dm3] 2R_20641159_SNP [dm6]	C	G	4.711e^-4	0.983	UPSTREAM rig & 1 other INTRON maf-S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
2L	2302969	2L_2302969_SNP [dm3] 2L_2302969_SNP [dm6]	C	A	4.713e^-4	0.983	INTERGENIC
2R	13074576	2R_13074576_SNP [dm3] 2R_17187071_SNP [dm6]	C	A	4.724e^-4	0.983	DOWNSTREAM CR44388 INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	10808831	3L_10808831_INS [dm3] 3L_10815731_INS [dm6]	A	AAG	4.725e^-4	0.983	UTR_3_PRIME CG42831 UPSTREAM CR45247
3L	22786789	3L_22786789_SNP [dm3] 3L_22793689_SNP [dm6]	A	T	4.727e^-4	0.983	UTR_3_PRIME jim
2L	3225957	2L_3225957_SNP [dm3] 2L_3225957_SNP [dm6]	C	T	4.731e^-4	0.983	INTERGENIC
2L	964007	2L_964007_SNP [dm3] 2L_964007_SNP [dm6]	T	C	4.739e^-4	0.983	INTERGENIC
3R	17031798	3R_17031798_DEL [dm3] 3R_21206076_DEL [dm6]	GGAGTTGTATAATATATGTC...	T	4.741e^-4	0.983	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10795290	3L_10795290_SNP [dm3] 3L_10802190_SNP [dm6]	G	A	4.745e^-4	0.983	UTR_3_PRIME CG12523 DOWNSTREAM CG12523
3R	2251891	3R_2251891_SNP [dm3] 3R_6426169_SNP [dm6]	C	A	4.757e^-4	0.983	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	8917106	3L_8917106_DEL [dm3] 3L_8924006_DEL [dm6]	GA	T	4.758e^-4	0.983	INTRON Tsp66E
X	4477318	X_4477318_SNP [dm3] X_4583285_SNP [dm6]	C	T	4.762e^-4	0.983	INTRON CR32773
3L	10799035	3L_10799035_SNP [dm3] 3L_10805935_SNP [dm6]	C	T	4.770e^-4	0.983	UPSTREAM CR44347 INTERGENIC
2L	3304381	2L_3304381_DEL [dm3] 2L_3304381_DEL [dm6]	TTGCAATGCAAAT...	T	4.774e^-4	0.983	UTR_5_PRIME CG3277
3R	17920080	3R_17920080_SNP [dm3] 3R_22094358_SNP [dm6]	C	T	4.780e^-4	0.983	INTRON CG5778
3R	22777791	3R_22777791_SNP [dm3] 3R_26952069_SNP [dm6]	T	C	4.780e^-4	0.983	INTRON CG6330
X	21508796	X_21508796_SNP [dm3] X_21637769_SNP [dm6]	A	T	4.787e^-4	0.983	INTERGENIC	transposable element FlyBase
2R	16511077	2R_16511077_SNP [dm3] 2R_20623572_SNP [dm6]	A	G	4.787e^-4	0.983	START_GAINED CG16742 UTR_5_PRIME CG16742 UPSTREAM CG11180	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	17362189	X_17362189_INS [dm3] X_17468156_INS [dm6]	T	CGCCATTCCCCATTC...	4.788e^-4	0.983	INTRON CG43658
3L	5960565	3L_5960565_SNP [dm3] 3L_5967465_SNP [dm6]	G	A	4.793e^-4	0.983	DOWNSTREAM CG10479 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	4660756	3L_4660756_SNP [dm3] 3L_4660756_SNP [dm6]	G	C	4.799e^-4	0.983	INTRON axo
3L	22525933	3L_22525933_SNP [dm3] 3L_22532833_SNP [dm6]	A	G	4.801e^-4	0.983	INTERGENIC	transposable element FlyBase
X	11545284	X_11545284_SNP [dm3] X_11651251_SNP [dm6]	A	C	4.804e^-4	0.983	INTRON Ptp10D
3R	15049686	3R_15049686_SNP [dm3] 3R_19223964_SNP [dm6]	T	C	4.826e^-4	0.983	INTRON vib
3R	26535150	3R_26535150_SNP [dm3] 3R_30709428_SNP [dm6]	G	A	4.829e^-4	0.983	INTERGENIC
3L	377755	3L_377755_SNP [dm3] 3L_377755_SNP [dm6]	C	T	4.833e^-4	0.983	UPSTREAM trh INTRON trh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
X	8968831	X_8968831_SNP [dm3] X_9074798_SNP [dm6]	G	A	4.849e^-4	0.983	INTRON CG44325
X	8968832	X_8968832_SNP [dm3] X_9074799_SNP [dm6]	C	T	4.849e^-4	0.983	INTRON CG44325
3R	12915840	3R_12915840_DEL [dm3] 3R_17090118_DEL [dm6]	GGTATTAGGG	G	4.855e^-4	0.983
3R	20602541	3R_20602541_SNP [dm3] 3R_24776819_SNP [dm6]	G	A	4.858e^-4	0.983	INTRON CG42331
3R	20340865	3R_20340865_SNP [dm3] 3R_24515143_SNP [dm6]	T	C	4.859e^-4	0.983	UPSTREAM CG13617 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3201621	3L_3201621_SNP [dm3] 3L_3201621_SNP [dm6]	G	A	4.880e^-4	0.983	NON_SYNONYMOUS_CODING gry DOWNSTREAM CG32271
3L	23852385	3L_23852385_SNP [dm3] 3L_23859285_SNP [dm6]	G	A	4.880e^-4	0.983	INTRON CG40470
3L	12357787	3L_12357787_SNP [dm3] 3L_12364687_SNP [dm6]	T	A	4.886e^-4	0.983	INTERGENIC
X	1820232	X_1820232_SNP [dm3] X_1926199_SNP [dm6]	T	A	4.920e^-4	0.983	SYNONYMOUS_CODING Ocrl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20723306	X_20723306_SNP [dm3] X_20852279_SNP [dm6]	C	T	4.922e^-4	0.983	INTRON shakB
2R	8544774	2R_8544774_SNP [dm3] 2R_12657269_SNP [dm6]	T	C	4.925e^-4	0.983	SPLICE_SITE_REGION CG8646 UTR_5_PRIME CG8646
X	1819623	X_1819623_SNP [dm3] X_1925590_SNP [dm6]	A	C	4.931e^-4	0.983	SYNONYMOUS_CODING Ocrl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22539439	3L_22539439_SNP [dm3] 3L_22546339_SNP [dm6]	C	G	4.936e^-4	0.983	INTERGENIC
3L	11907388	3L_11907388_SNP [dm3] 3L_11914288_SNP [dm6]	C	A	4.963e^-4	0.983	INTRON CG44837
X	10449056	X_10449056_SNP [dm3] X_10555023_SNP [dm6]	G	T	4.979e^-4	0.983	INTRON spri
2R	5261113	2R_5261113_SNP [dm3] 2R_9373608_SNP [dm6]	C	T	4.984e^-4	0.983	NON_SYNONYMOUS_CODING CG13954	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13368217	3L_13368217_SNP [dm3] 3L_13375117_SNP [dm6]	A	T	4.990e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23384257	3R_23384257_SNP [dm3] 3R_27558535_SNP [dm6]	C	A	4.998e^-4	0.983	UTR_5_PRIME Klp98A DOWNSTREAM CG5646	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	5905313	X_5905313_DEL [dm3] X_6011280_DEL [dm6]	ACATA	A	5.001e^-4	0.983	INTRON mab-21	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	9242693	3L_9242693_SNP [dm3] 3L_9249593_SNP [dm6]	C	T	5.006e^-4	0.983	UPSTREAM CG4477 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18945756	2R_18945756_SNP [dm3] 2R_23058233_SNP [dm6]	C	A	5.018e^-4	0.983	UPSTREAM CG44252 & 1 other INTRON CG44252
X	8200804	X_8200804_SNP [dm3] X_8306771_SNP [dm6]	T	A	5.022e^-4	0.983	SYNONYMOUS_CODING nAChRalpha3
X	17955940	X_17955940_DEL [dm3] X_18061907_DEL [dm6]	TT	T	5.038e^-4	0.983	INTRON Sh	TF binding site BDTNP1_TFBS_twi
X	7466173	X_7466173_SNP [dm3] X_7572140_SNP [dm6]	T	C	5.038e^-4	0.983	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
X	7641790	X_7641790_SNP [dm3] X_7747757_SNP [dm6]	A	G	5.045e^-4	0.983	INTERGENIC
3R	17663251	3R_17663251_SNP [dm3] 3R_21837529_SNP [dm6]	A	G	5.050e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	12675958	X_12675958_SNP [dm3] X_12781925_SNP [dm6]	A	T	5.057e^-4	0.983	INTRON CG32647
3L	5326281	3L_5326281_SNP [dm3] 3L_5333181_SNP [dm6]	A	T	5.059e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11900972	3L_11900972_SNP [dm3] 3L_11907872_SNP [dm6]	G	T	5.061e^-4	0.983	INTRON CG44837
3L	4110689	3L_4110689_SNP [dm3] 3L_4110689_SNP [dm6]	T	C	5.065e^-4	0.983	SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	13368206	3L_13368206_SNP [dm3] 3L_13375106_SNP [dm6]	G	A	5.066e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_HSA
X	4831771	X_4831771_SNP [dm3] X_4937738_SNP [dm6]	G	T	5.066e^-4	0.983	INTRON CG44774	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12667621	3L_12667621_SNP [dm3] 3L_12674521_SNP [dm6]	T	A	5.073e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	4224549	X_4224549_SNP [dm3] X_4330516_SNP [dm6]	G	A	5.079e^-4	0.983	INTRON norpA
X	16157557	X_16157557_SNP [dm3] X_16263524_SNP [dm6]	G	A	5.080e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5649762	2R_5649762_SNP [dm3] 2R_9762257_SNP [dm6]	C	A	5.086e^-4	0.983	SYNONYMOUS_CODING trpl	TF binding site mE1_TFBS_cad
3L	14056669	3L_14056669_SNP [dm3] 3L_14063569_SNP [dm6]	A	G	5.089e^-4	0.983	INTRON CG32138
3R	2692656	3R_2692656_SNP [dm3] 3R_6866934_SNP [dm6]	A	C	5.091e^-4	0.983	DOWNSTREAM ftz INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	21485843	3L_21485843_SNP [dm3] 3L_21492743_SNP [dm6]	T	G	5.100e^-4	0.983	UTR_5_PRIME CG7202 UPSTREAM CG7519
2R	14314239	2R_14314239_SNP [dm3] 2R_18426734_SNP [dm6]	C	T	5.100e^-4	0.983	SYNONYMOUS_CODING CG12263 DOWNSTREAM CG5174	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	18863101	3L_18863101_SNP [dm3] 3L_18870001_SNP [dm6]	G	T	5.115e^-4	0.983	UTR_3_PRIME CG6852 UPSTREAM Blos3 DOWNSTREAM Rad9 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	19138442	3R_19138442_SNP [dm3] 3R_23312720_SNP [dm6]	C	T	5.119e^-4	0.983	INTRON pnt
2L	12260404	2L_12260404_SNP [dm3] 2L_12260404_SNP [dm6]	G	C	5.122e^-4	0.983	INTRON aret
3R	23906598	3R_23906598_SNP [dm3] 3R_28080876_SNP [dm6]	T	A	5.122e^-4	0.983	INTRON CG34362
3L	2630227	3L_2630227_SNP [dm3] 3L_2630227_SNP [dm6]	T	C	5.126e^-4	0.983	UPSTREAM Pxn EXON CR45660
2L	1718962	2L_1718962_SNP [dm3] 2L_1718962_SNP [dm6]	C	G	5.128e^-4	0.983	INTRON Rim2
X	5905297	X_5905297_SNP [dm3] X_6011264_SNP [dm6]	T	C	5.144e^-4	0.983	INTRON mab-21	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	6435275	2R_6435275_SNP [dm3] 2R_10547770_SNP [dm6]	A	T	5.146e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13221801	3R_13221801_SNP [dm3] 3R_17396079_SNP [dm6]	C	T	5.148e^-4	0.983	UTR_3_PRIME Sur-8 DOWNSTREAM Sur-8	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3L	13365395	3L_13365395_SNP [dm3] 3L_13372295_SNP [dm6]	A	T	5.152e^-4	0.983	INTERGENIC
3R	23688628	3R_23688628_INS [dm3] 3R_27862906_INS [dm6]	T	TCCGCAGCCCAGAGCCTGCA...	5.154e^-4	0.983	INTRON CG34353
3R	19901149	3R_19901149_SNP [dm3] 3R_24075427_SNP [dm6]	T	G	5.158e^-4	0.983	INTRON 4EHP
X	2574633	X_2574633_SNP [dm3] X_2680600_SNP [dm6]	T	G	5.162e^-4	0.983	NON_SYNONYMOUS_CODING HLH3B	TF binding site mE1_TFBS_chinmo
2R	13635689	2R_13635689_SNP [dm3] 2R_17748184_SNP [dm6]	A	T	5.165e^-4	0.983	UPSTREAM CG10931 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	21208406	X_21208406_SNP [dm3] X_21337379_SNP [dm6]	G	A	5.176e^-4	0.983	INTRON tty	TF binding site BDTNP1_TFBS_dl
X	17963435	X_17963435_SNP [dm3] X_18069402_SNP [dm6]	G	A	5.177e^-4	0.983	SYNONYMOUS_CODING Dhc16F
X	10848535	X_10848535_SNP [dm3] X_10954502_SNP [dm6]	C	A	5.180e^-4	0.983	UTR_5_PRIME Myo10A INTRON Myo10A
2R	16935279	2R_16935279_SNP [dm3] 2R_21047774_SNP [dm6]	A	G	5.185e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	9411885	X_9411885_SNP [dm3] X_9517852_SNP [dm6]	A	G	5.196e^-4	0.983	INTRON CG32700
3L	12733852	3L_12733852_SNP [dm3] 3L_12740752_SNP [dm6]	C	T	5.198e^-4	0.983	SYNONYMOUS_CODING Ptp69D UPSTREAM CG32112
3R	9923411	3R_9923411_SNP [dm3] 3R_14097689_SNP [dm6]	A	G	5.206e^-4	0.983	SYNONYMOUS_CODING CG9920 UPSTREAM CCHa1
3L	1701273	3L_1701273_SNP [dm3] 3L_1701273_SNP [dm6]	G	T	5.215e^-4	0.983	UTR_3_PRIME CG13931 DOWNSTREAM CG13931 INTRON CG7991	TF binding site mE1_TFBS_cad
3L	10799018	3L_10799018_SNP [dm3] 3L_10805918_SNP [dm6]	G	A	5.225e^-4	0.983	EXON CR44347
3R	21800995	3R_21800995_SNP [dm3] 3R_25975273_SNP [dm6]	C	T	5.227e^-4	0.983	INTRON CG42261
3R	18049043	3R_18049043_SNP [dm3] 3R_22223321_SNP [dm6]	T	C	5.227e^-4	0.983	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15019738	2L_15019738_SNP [dm3] 2L_15019738_SNP [dm6]	T	C	5.240e^-4	0.983	INTRON GABA-B-R1
3R	21590008	3R_21590008_DEL [dm3] 3R_25764286_DEL [dm6]	TT	T	5.245e^-4	0.983	INTERGENIC
3R	7725521	3R_7725521_SNP [dm3] 3R_11899799_SNP [dm6]	A	T	5.251e^-4	0.983	INTRON Cad87A	TF binding site mE1_TFBS_cad
X	2996079	X_2996079_DEL [dm3] X_3102046_DEL [dm6]	AAA	A	5.261e^-4	0.983	INTRON kirre
3L	5326434	3L_5326434_SNP [dm3] 3L_5333334_SNP [dm6]	T	A	5.268e^-4	0.983	INTERGENIC
X	4242812	X_4242812_SNP [dm3] X_4348779_SNP [dm6]	G	C	5.268e^-4	0.983	INTRON norpA
X	11655419	X_11655419_SNP [dm3] X_11761386_SNP [dm6]	A	C	5.274e^-4	0.983	INTRON m	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6759244	3R_6759244_SNP [dm3] 3R_10933522_SNP [dm6]	G	A	5.274e^-4	0.983	INTERGENIC
3R	10201439	3R_10201439_DEL [dm3] 3R_14375717_DEL [dm6]	CACCGAC	C	5.275e^-4	0.983	EXON CR44943
X	6079238	X_6079238_SNP [dm3] X_6185205_SNP [dm6]	T	C	5.278e^-4	0.983	INTRON Ca-alpha1T
3L	8807453	3L_8807453_SNP [dm3] 3L_8814353_SNP [dm6]	T	G	5.278e^-4	0.983	INTERGENIC
2R	10058330	2R_10058330_DEL [dm3] 2R_14170825_DEL [dm6]	ATGCAGTGGA	A	5.292e^-4	0.983	UPSTREAM CG8331 & 1 other DOWNSTREAM CG18324 INTRON CG8331	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22055779	X_22055779_DEL [dm3] X_22653943_DEL [dm6]	CTACGAGCAAC...	C	5.297e^-4	0.983	INTERGENIC	transposable element FlyBase
3R	21094144	3R_21094144_SNP [dm3] 3R_25268422_SNP [dm6]	A	T	5.299e^-4	0.983	UPSTREAM CR13656 DOWNSTREAM RIOK2 EXON CR45214 & 1 other
3L	18186775	3L_18186775_SNP [dm3] 3L_18193675_SNP [dm6]	C	A	5.301e^-4	0.983	INTERGENIC
2L	17618881	2L_17618881_SNP [dm3] 2L_17618881_SNP [dm6]	C	T	5.301e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_inv
2R	15474612	2R_15474612_SNP [dm3] 2R_19587107_SNP [dm6]	G	A	5.302e^-4	0.983	UPSTREAM CG42878 INTRON sm
3L	1413070	3L_1413070_SNP [dm3] 3L_1413070_SNP [dm6]	T	A	5.315e^-4	0.983	NON_SYNONYMOUS_CODING CG9168 INTRON Ptp61F
3R	18474026	3R_18474026_SNP [dm3] 3R_22648304_SNP [dm6]	C	T	5.316e^-4	0.983	INTRON CG45058
2R	5653717	2R_5653717_SNP [dm3] 2R_9766212_SNP [dm6]	G	A	5.324e^-4	0.983	UPSTREAM CR44205 DOWNSTREAM CG1688 & 1 other INTERGENIC
3R	23260725	3R_23260725_SNP [dm3] 3R_27435003_SNP [dm6]	C	G	5.328e^-4	0.983	INTRON side	TF binding site BDTNP1_TFBS_twi
3R	24134288	3R_24134288_SNP [dm3] 3R_28308566_SNP [dm6]	C	T	5.331e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5326295	3L_5326295_SNP [dm3] 3L_5333195_SNP [dm6]	G	T	5.337e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	3830407	2R_3830407_SNP [dm3] 2R_7942902_SNP [dm6]	G	T	5.338e^-4	0.983	UPSTREAM CG34430 INTRON CG14764
2L	902146	2L_902146_INS [dm3] 2L_902146_INS [dm6]	T	TT	5.344e^-4	0.983	UPSTREAM snRNA:U1:21D DOWNSTREAM Lsp1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	2437398	3R_2437398_SNP [dm3] 3R_6611676_SNP [dm6]	A	T	5.351e^-4	0.983	INTERGENIC
2L	14132818	2L_14132818_SNP [dm3] 2L_14132818_SNP [dm6]	C	T	5.352e^-4	0.983	INTERGENIC
3R	18799169	3R_18799169_SNP [dm3] 3R_22973447_SNP [dm6]	G	A	5.359e^-4	0.983	INTERGENIC
2R	5639895	2R_5639895_SNP [dm3] 2R_9752390_SNP [dm6]	C	T	5.360e^-4	0.983	INTERGENIC
2L	18115661	2L_18115661_SNP [dm3] 2L_18115661_SNP [dm6]	G	T	5.362e^-4	0.983	DOWNSTREAM CG15152 INTERGENIC
2L	7495773	2L_7495773_SNP [dm3] 2L_7495773_SNP [dm6]	A	G	5.364e^-4	0.983	UTR_5_PRIME Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	20777584	3R_20777584_SNP [dm3] 3R_24951862_SNP [dm6]	T	A	5.371e^-4	0.983	INTERGENIC
3R	21408486	3R_21408486_SNP [dm3] 3R_25582764_SNP [dm6]	C	A	5.372e^-4	0.983	SYNONYMOUS_CODING CG4582 INTRON msi	TF binding site mE1_TFBS_cad
2R	5261353	2R_5261353_SNP [dm3] 2R_9373848_SNP [dm6]	C	A	5.374e^-4	0.983	NON_SYNONYMOUS_CODING CG13954	TF binding site mE1_TFBS_chinmo
3R	2228684	3R_2228684_SNP [dm3] 3R_6402962_SNP [dm6]	T	C	5.379e^-4	0.983	INTRON Dmtn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19357029	2R_19357029_SNP [dm3] 2R_23469506_SNP [dm6]	T	A	5.401e^-4	0.983	DOWNSTREAM Or59b INTRON CG43795
3R	23265199	3R_23265199_SNP [dm3] 3R_27439477_SNP [dm6]	A	G	5.439e^-4	0.983	UPSTREAM CG43447 INTRON CG44290
2L	7539026	2L_7539026_SNP [dm3] 2L_7539026_SNP [dm6]	C	T	5.451e^-4	0.983	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	1790842	X_1790842_SNP [dm3] X_1896809_SNP [dm6]	C	T	5.452e^-4	0.983	INTRON arm
2R	8544779	2R_8544779_SNP [dm3] 2R_12657274_SNP [dm6]	C	G	5.459e^-4	0.983	UTR_5_PRIME CG8646
3L	4378890	3L_4378890_SNP [dm3] 3L_4378890_SNP [dm6]	C	T	5.459e^-4	0.983	UPSTREAM CR44360 INTRON DopEcR
3R	15132417	3R_15132417_SNP [dm3] 3R_19306695_SNP [dm6]	A	T	5.462e^-4	0.983	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	12020229	X_12020229_SNP [dm3] X_12126196_SNP [dm6]	T	G	5.467e^-4	0.983	INTRON Ten-a
3R	14924176	3R_14924176_SNP [dm3] 3R_19098454_SNP [dm6]	G	A	5.489e^-4	0.983	INTRON CG6040
X	1843915	X_1843915_SNP [dm3] X_1949882_SNP [dm6]	T	G	5.506e^-4	0.983	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12856563	2R_12856563_SNP [dm3] 2R_16969058_SNP [dm6]	C	T	5.513e^-4	0.983	UPSTREAM CR44377 DOWNSTREAM tRNA:G3:53E INTERGENIC
3L	3203154	3L_3203154_SNP [dm3] 3L_3203154_SNP [dm6]	T	C	5.520e^-4	0.983	UTR_5_PRIME CG32271 DOWNSTREAM CG33159 INTRON gry	TF binding site mE1_TFBS_chinmo
2L	2302096	2L_2302096_DEL [dm3] 2L_2302096_DEL [dm6]	CACTA	C	5.522e^-4	0.983	INTERGENIC
2R	3516833	2R_3516833_SNP [dm3] 2R_7629328_SNP [dm6]	C	A	5.538e^-4	0.983	INTRON CG43340
3R	22828520	3R_22828520_INS [dm3] 3R_27002798_INS [dm6]	T	TTA	5.540e^-4	0.983	UTR_3_PRIME CG31077 DOWNSTREAM CG6296 INTRON RYa-R
3L	683253	3L_683253_SNP [dm3] 3L_683253_SNP [dm6]	G	T	5.542e^-4	0.983	NON_SYNONYMOUS_CODING ebd1 UPSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18421637	3L_18421637_SNP [dm3] 3L_18428537_SNP [dm6]	C	A	5.553e^-4	0.983	INTERGENIC
2L	15730696	2L_15730696_SNP [dm3] 2L_15730696_SNP [dm6]	A	G	5.559e^-4	0.983	SYNONYMOUS_CODING CycE	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13444538	X_13444538_SNP [dm3] X_13550505_SNP [dm6]	T	A	5.560e^-4	0.983	INTERGENIC
3R	26939710	3R_26939710_SNP [dm3] 3R_31113988_SNP [dm6]	A	G	5.566e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18865761	3L_18865761_SNP [dm3] 3L_18872661_SNP [dm6]	T	A	5.566e^-4	0.983	UPSTREAM Ugt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

anteriorLength phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results