©2022-2025 Deplancke lab, EPFL, 1015 Lausanne
By genomic position | |
Variant impact | |
Gene name |
Involved in binding site | |
Binding site |
Chromosome | Position | ID | Reference | Variant | p-value | FDR_BH | Transcript annotation | Binding site annotation | |
---|---|---|---|---|---|---|---|---|---|
3L | 9257216 | 3L_9257216_SNP [dm3] 3L_9264116_SNP [dm6] | T | C | 3.895e-7 | 0.685 |
INTRON
GluRIB |
||
3R | 23409934 | 3R_23409934_SNP [dm3] 3R_27584212_SNP [dm6] | G | T | 1.593e-6 | 0.685 |
SYNONYMOUS_CODING
raps |
TF binding site
mE1_TFBS_cad mE1_TFBS_chinmo
|
|
3L | 7992929 | 3L_7992929_SNP [dm3] 3L_7999829_SNP [dm6] | A | C | 2.308e-6 | 0.685 |
INTRON
nmo |
||
3R | 23409880 | 3R_23409880_SNP [dm3] 3R_27584158_SNP [dm6] | C | T | 2.576e-6 | 0.685 |
SYNONYMOUS_CODING
raps |
TF binding site
mE1_TFBS_cad mE1_TFBS_chinmo
|
|
X | 21060808 | X_21060808_SNP [dm3] X_21189781_SNP [dm6] | G | C | 3.275e-6 | 0.685 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_prd BDTNP1_TFBS_twi
|
|
3L | 9257218 | 3L_9257218_SNP [dm3] 3L_9264118_SNP [dm6] | A | G | 4.693e-6 | 0.685 |
INTRON
GluRIB |
||
3R | 10497707 | 3R_10497707_SNP [dm3] 3R_14671985_SNP [dm6] | G | C | 5.415e-6 | 0.685 |
INTRON
Meltrin |
TF binding site
BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
|
|
3R | 4442763 | 3R_4442763_SNP [dm3] 3R_8617041_SNP [dm6] | T | A | 5.786e-6 | 0.685 |
INTRON
5-HT2B |
TF binding site
mE1_TFBS_inv
|
|
3L | 2509145 | 3L_2509145_SNP [dm3] 3L_2509145_SNP [dm6] | A | T | 5.896e-6 | 0.685 |
INTRON
Spn |
||
2L | 16001508 | 2L_16001508_SNP [dm3] 2L_16001508_SNP [dm6] | T | A | 6.937e-6 | 0.685 |
UPSTREAM
CR43825 INTRON beat-Ic |
||
3L | 9257445 | 3L_9257445_DEL [dm3] 3L_9264345_DEL [dm6] | TATACA | T | 7.477e-6 | 0.685 |
INTRON
GluRIB |
||
3L | 4797139 | 3L_4797139_SNP [dm3] 3L_4797139_SNP [dm6] | G | T | 8.171e-6 | 0.685 |
DOWNSTREAM
RhoGEF64C INTERGENIC |
||
2L | 21062657 | 2L_21062657_SNP [dm3] 2L_21062657_SNP [dm6] | G | T | 8.596e-6 | 0.685 |
INTRON
CG9265 |
||
X | 21060776 | X_21060776_SNP [dm3] X_21189749_SNP [dm6] | C | T | 8.978e-6 | 0.685 |
DOWNSTREAM
CR45506 INTERGENIC |
TF binding site
BDTNP1_TFBS_prd BDTNP1_TFBS_twi
|
|
3R | 20388064 | 3R_20388064_SNP [dm3] 3R_24562342_SNP [dm6] | T | C | 9.143e-6 | 0.685 |
SYNONYMOUS_CODING
CG13624 |
TF binding site
mE1_TFBS_cad
|
|
3R | 16070653 | 3R_16070653_INS [dm3] 3R_20244931_INS [dm6] | A | AA | 9.359e-6 | 0.685 |
UTR_3_PRIME
Nlg4 DOWNSTREAM Nlg4 |
||
3R | 26675853 | 3R_26675853_SNP [dm3] 3R_30850131_SNP [dm6] | T | C | 9.552e-6 | 0.685 |
INTERGENIC
|
regulatory region
REDfly_CRMs
TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr |
|
X | 17931816 | X_17931816_SNP [dm3] X_18037783_SNP [dm6] | A | G | 1.034e-5 | 0.685 |
INTRON
Sh |
||
3R | 18205460 | 3R_18205460_SNP [dm3] 3R_22379738_SNP [dm6] | C | T | 1.086e-5 | 0.685 |
SYNONYMOUS_CODING
CG18596 UPSTREAM CG34149 |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_HSA
|
|
3L | 7802944 | 3L_7802944_SNP [dm3] 3L_7809844_SNP [dm6] | T | G | 1.117e-5 | 0.685 |
UPSTREAM
CG32369 INTERGENIC |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
|
|
3L | 7460573 | 3L_7460573_SNP [dm3] 3L_7467473_SNP [dm6] | C | T | 1.208e-5 | 0.685 |
SPLICE_SITE_REGION
Tsp66A & 2 others INTRON Tsp66A & 2 others |
TF binding site
BDTNP1_TFBS_twi mE1_TFBS_HSA
|
|
2R | 12059568 | 2R_12059568_SNP [dm3] 2R_16172063_SNP [dm6] | G | A | 1.265e-5 | 0.685 |
SYNONYMOUS_CODING
Ptp52F |
TF binding site
mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
|
|
X | 18518028 | X_18518028_SNP [dm3] X_18623995_SNP [dm6] | T | C | 1.291e-5 | 0.685 |
DOWNSTREAM
wgn INTERGENIC |
||
X | 1795216 | X_1795216_SNP [dm3] X_1901183_SNP [dm6] | C | T | 1.334e-5 | 0.685 |
SYNONYMOUS_CODING
CG32803 UPSTREAM arm & 1 other DOWNSTREAM CG32801 |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
|
|
3L | 9257162 | 3L_9257162_SNP [dm3] 3L_9264062_SNP [dm6] | T | G | 1.347e-5 | 0.685 |
INTRON
GluRIB |
||
3L | 7468106 | 3L_7468106_SNP [dm3] 3L_7475006_SNP [dm6] | G | A | 1.440e-5 | 0.685 |
UPSTREAM
CG43292 INTERGENIC |
||
3L | 4797099 | 3L_4797099_SNP [dm3] 3L_4797099_SNP [dm6] | G | A | 1.455e-5 | 0.685 |
DOWNSTREAM
RhoGEF64C INTERGENIC |
||
3L | 1210268 | 3L_1210268_SNP [dm3] 3L_1210268_SNP [dm6] | C | T | 1.456e-5 | 0.685 |
UPSTREAM
LysC DOWNSTREAM LysD INTRON mwh |
||
3L | 4024179 | 3L_4024179_SNP [dm3] 3L_4024179_SNP [dm6] | A | G | 1.502e-5 | 0.685 |
SYNONYMOUS_CODING
CG11594 |
TF binding site
mE1_TFBS_chinmo mE1_TFBS_HSA
|
|
3R | 26636873 | 3R_26636873_DEL [dm3] 3R_30811151_DEL [dm6] | GG | G | 1.540e-5 | 0.685 |
INTRON
cindr |
||
3L | 8634362 | 3L_8634362_SNP [dm3] 3L_8641262_SNP [dm6] | A | C | 1.576e-5 | 0.685 |
INTRON
Cpr66D |
||
2L | 16001435 | 2L_16001435_SNP [dm3] 2L_16001435_SNP [dm6] | A | C | 1.607e-5 | 0.685 |
UPSTREAM
CR43825 INTRON beat-Ic |
||
3L | 4797140 | 3L_4797140_SNP [dm3] 3L_4797140_SNP [dm6] | G | T | 1.643e-5 | 0.685 |
DOWNSTREAM
RhoGEF64C INTERGENIC |
||
3R | 18206387 | 3R_18206387_SNP [dm3] 3R_22380665_SNP [dm6] | A | G | 1.684e-5 | 0.685 |
NON_SYNONYMOUS_CODING
CG34149 UPSTREAM CG43342 DOWNSTREAM CG18596 |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
|
|
3R | 23564194 | 3R_23564194_SNP [dm3] 3R_27738472_SNP [dm6] | A | G | 1.708e-5 | 0.685 |
INTRON
Ets98B |
||
3R | 25277983 | 3R_25277983_SNP [dm3] 3R_29452261_SNP [dm6] | T | C | 1.722e-5 | 0.685 |
INTRON
Ptp99A |
||
X | 17932747 | X_17932747_SNP [dm3] X_18038714_SNP [dm6] | T | C | 1.749e-5 | 0.685 |
INTRON
Sh |
||
X | 21060815 | X_21060815_SNP [dm3] X_21189788_SNP [dm6] | A | T | 1.769e-5 | 0.685 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_prd BDTNP1_TFBS_twi
|
|
X | 18474226 | X_18474226_SNP [dm3] X_18580193_SNP [dm6] | T | A | 1.834e-5 | 0.685 |
INTERGENIC
|
TF binding site
mE1_TFBS_Kr
|
|
3L | 1547968 | 3L_1547968_SNP [dm3] 3L_1547968_SNP [dm6] | T | C | 1.887e-5 | 0.685 |
UPSTREAM
Cct1 INTRON Cct1 |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
|
|
2L | 16001424 | 2L_16001424_SNP [dm3] 2L_16001424_SNP [dm6] | G | A | 1.900e-5 | 0.685 |
UPSTREAM
CR43825 INTRON beat-Ic |
||
X | 21060780 | X_21060780_SNP [dm3] X_21189753_SNP [dm6] | T | C | 1.934e-5 | 0.685 |
DOWNSTREAM
CR45506 INTERGENIC |
TF binding site
BDTNP1_TFBS_prd BDTNP1_TFBS_twi
|
|
3L | 4797019 | 3L_4797019_SNP [dm3] 3L_4797019_SNP [dm6] | C | A | 1.982e-5 | 0.685 |
DOWNSTREAM
RhoGEF64C INTERGENIC |
||
3R | 14363450 | 3R_14363450_SNP [dm3] 3R_18537728_SNP [dm6] | C | T | 1.988e-5 | 0.685 |
INTRON
fru |
||
2R | 3778487 | 2R_3778487_SNP [dm3] 2R_7890982_SNP [dm6] | C | G | 2.044e-5 | 0.685 |
INTRON
CG30377 |
||
3R | 27143094 | 3R_27143094_SNP [dm3] 3R_31317372_SNP [dm6] | C | T | 2.085e-5 | 0.685 |
INTRON
CG34347 |
||
3R | 25140268 | 3R_25140268_SNP [dm3] 3R_29314546_SNP [dm6] | T | G | 2.186e-5 | 0.685 |
DOWNSTREAM
Cnx99A INTERGENIC |
||
3L | 2489411 | 3L_2489411_SNP [dm3] 3L_2489411_SNP [dm6] | C | A | 2.214e-5 | 0.685 |
UPSTREAM
CG1146 INTRON CG45186 & 1 other |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_twi
|
|
X | 18518025 | X_18518025_SNP [dm3] X_18623992_SNP [dm6] | C | A | 2.223e-5 | 0.685 |
DOWNSTREAM
wgn INTERGENIC |
||
2R | 15257445 | 2R_15257445_SNP [dm3] 2R_19369940_SNP [dm6] | A | T | 2.288e-5 | 0.685 |
SPLICE_SITE_REGION
CG9416 INTRON CG9416 |
||
X | 1795872 | X_1795872_SNP [dm3] X_1901839_SNP [dm6] | G | A | 2.296e-5 | 0.685 |
UTR_5_PRIME
CG32803 UPSTREAM CR43864 & 1 other DOWNSTREAM CG32801 |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_ttk
|
|
3L | 7802957 | 3L_7802957_INS [dm3] 3L_7809857_INS [dm6] | A | AC | 2.313e-5 | 0.685 |
UPSTREAM
CG32369 INTERGENIC |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
|
|
3L | 1210279 | 3L_1210279_SNP [dm3] 3L_1210279_SNP [dm6] | T | C | 2.338e-5 | 0.685 |
UPSTREAM
LysC DOWNSTREAM LysD INTRON mwh |
||
X | 17935519 | X_17935519_SNP [dm3] X_18041486_SNP [dm6] | T | A | 2.369e-5 | 0.685 |
INTRON
Sh |
||
3L | 9257238 | 3L_9257238_SNP [dm3] 3L_9264138_SNP [dm6] | A | G | 2.381e-5 | 0.685 |
INTRON
GluRIB |
||
3L | 1210278 | 3L_1210278_SNP [dm3] 3L_1210278_SNP [dm6] | T | G | 2.487e-5 | 0.685 |
UPSTREAM
LysC DOWNSTREAM LysD INTRON mwh |
||
2R | 12018929 | 2R_12018929_SNP [dm3] 2R_16131424_SNP [dm6] | C | T | 2.537e-5 | 0.685 |
INTRON
spin |
TF binding site
mE1_TFBS_cad
|
|
2L | 16001449 | 2L_16001449_SNP [dm3] 2L_16001449_SNP [dm6] | T | A | 2.551e-5 | 0.685 |
UPSTREAM
CR43825 INTRON beat-Ic |
||
3L | 7473809 | 3L_7473809_SNP [dm3] 3L_7480709_SNP [dm6] | T | A | 2.578e-5 | 0.685 |
INTERGENIC
|
TF binding site
mE1_TFBS_inv
|
|
2R | 4837187 | 2R_4837187_SNP [dm3] 2R_8949682_SNP [dm6] | C | T | 2.615e-5 | 0.685 |
SYNONYMOUS_CODING
CG8229 INTRON CG8229 & 1 other |
||
2R | 19180574 | 2R_19180574_SNP [dm3] 2R_23293051_SNP [dm6] | G | C | 2.628e-5 | 0.685 |
INTERGENIC
|
||
X | 17937141 | X_17937141_SNP [dm3] X_18043108_SNP [dm6] | T | C | 2.634e-5 | 0.685 |
UPSTREAM
CG15373 INTRON Sh |
||
3R | 24887355 | 3R_24887355_SNP [dm3] 3R_29061633_SNP [dm6] | G | A | 2.728e-5 | 0.685 |
SYNONYMOUS_CODING
Cul5 |
TF binding site
mE1_TFBS_chinmo mE1_TFBS_sens
|
|
X | 17939764 | X_17939764_SNP [dm3] X_18045731_SNP [dm6] | C | T | 2.733e-5 | 0.685 |
SYNONYMOUS_CODING
CG15373 INTRON Sh |
||
3L | 9258218 | 3L_9258218_DEL [dm3] 3L_9265118_DEL [dm6] | AATATGGTATAC... | A | 2.834e-5 | 0.685 |
INTRON
GluRIB |
||
3R | 20412962 | 3R_20412962_INS [dm3] 3R_24587240_INS [dm6] | G | GC | 2.853e-5 | 0.685 |
INTRON
mld |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
|
|
X | 17937058 | X_17937058_DEL [dm3] X_18043025_DEL [dm6] | AGCGA | A | 2.912e-5 | 0.685 |
INTRON
Sh |
||
3L | 23026455 | 3L_23026455_SNP [dm3] 3L_23033355_SNP [dm6] | G | A | 2.964e-5 | 0.685 |
INTRON
nrm |
||
3L | 7117509 | 3L_7117509_SNP [dm3] 3L_7124409_SNP [dm6] | A | G | 2.984e-5 | 0.685 |
SYNONYMOUS_CODING
msl-3 |
TF binding site
mE1_TFBS_sens
|
|
3R | 23409736 | 3R_23409736_SNP [dm3] 3R_27584014_SNP [dm6] | G | A | 3.026e-5 | 0.685 |
SYNONYMOUS_CODING
raps |
TF binding site
mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
|
|
X | 17933040 | X_17933040_DEL [dm3] X_18039007_DEL [dm6] | AA | A | 3.062e-5 | 0.685 |
INTRON
Sh |
||
X | 1791005 | X_1791005_SNP [dm3] X_1896972_SNP [dm6] | T | C | 3.096e-5 | 0.685 |
INTRON
arm |
||
X | 17936778 | X_17936778_SNP [dm3] X_18042745_SNP [dm6] | C | T | 3.136e-5 | 0.685 |
INTRON
Sh |
||
3L | 8634594 | 3L_8634594_SNP [dm3] 3L_8641494_SNP [dm6] | G | C | 3.236e-5 | 0.685 |
INTRON
Cpr66D |
||
X | 17939340 | X_17939340_SNP [dm3] X_18045307_SNP [dm6] | C | T | 3.247e-5 | 0.685 |
SYNONYMOUS_CODING
CG15373 INTRON Sh |
||
X | 17936821 | X_17936821_INS [dm3] X_18042788_INS [dm6] | A | AAAAA | 3.256e-5 | 0.685 |
INTRON
Sh |
||
3L | 6565907 | 3L_6565907_SNP [dm3] 3L_6572807_SNP [dm6] | C | G | 3.293e-5 | 0.685 |
INTRON
CG18769 & 1 other |
||
X | 1796940 | X_1796940_SNP [dm3] X_1902907_SNP [dm6] | T | C | 3.297e-5 | 0.685 |
UTR_5_PRIME
CG32801 UPSTREAM CG32803 DOWNSTREAM Edem1 EXON CR43864 |
TF binding site
BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
|
|
2R | 17103294 | 2R_17103294_SNP [dm3] 2R_21215789_SNP [dm6] | T | C | 3.335e-5 | 0.685 |
SYNONYMOUS_CODING
CG15661 UPSTREAM CG4302 |
||
X | 17933278 | X_17933278_SNP [dm3] X_18039245_SNP [dm6] | C | T | 3.390e-5 | 0.685 |
UTR_5_PRIME
Sh |
||
3R | 4925113 | 3R_4925113_SNP [dm3] 3R_9099391_SNP [dm6] | T | G | 3.439e-5 | 0.685 |
INTRON
pum |
||
3L | 1448781 | 3L_1448781_SNP [dm3] 3L_1448781_SNP [dm6] | T | A | 3.463e-5 | 0.685 |
INTRON
Ptp61F |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_sens
|
|
2R | 17529496 | 2R_17529496_SNP [dm3] 2R_21641991_SNP [dm6] | T | G | 3.471e-5 | 0.685 |
INTERGENIC
|
||
3L | 7473611 | 3L_7473611_SNP [dm3] 3L_7480511_SNP [dm6] | G | C | 3.482e-5 | 0.685 |
INTERGENIC
|
TF binding site
mE1_TFBS_HSA mE1_TFBS_inv
|
|
3L | 1210255 | 3L_1210255_SNP [dm3] 3L_1210255_SNP [dm6] | C | A | 3.540e-5 | 0.685 |
UPSTREAM
LysC DOWNSTREAM LysD INTRON mwh |
||
3L | 1210244 | 3L_1210244_INS [dm3] 3L_1210244_INS [dm6] | G | GGGGTTG | 3.541e-5 | 0.685 |
UPSTREAM
LysC DOWNSTREAM LysD INTRON mwh |
||
3L | 1210252 | 3L_1210252_SNP [dm3] 3L_1210252_SNP [dm6] | G | A | 3.541e-5 | 0.685 |
UPSTREAM
LysC DOWNSTREAM LysD INTRON mwh |
||
3L | 1210253 | 3L_1210253_INS [dm3] 3L_1210253_INS [dm6] | T | TCTGCTTTTTCTG... | 3.541e-5 | 0.685 |
UPSTREAM
LysC DOWNSTREAM LysD INTRON mwh |
||
3L | 1210259 | 3L_1210259_MNP [dm3] 3L_1210259_MNP [dm6] | GACGA | ATTCC | 3.541e-5 | 0.685 |
UPSTREAM
LysC DOWNSTREAM LysD INTRON mwh |
||
3L | 1210272 | 3L_1210272_INS [dm3] 3L_1210272_INS [dm6] | A | AGTCA | 3.541e-5 | 0.685 |
UPSTREAM
LysC DOWNSTREAM LysD INTRON mwh |
||
X | 17933074 | X_17933074_SNP [dm3] X_18039041_SNP [dm6] | G | A | 3.542e-5 | 0.685 |
INTRON
Sh |
||
3R | 19588181 | 3R_19588181_SNP [dm3] 3R_23762459_SNP [dm6] | T | C | 3.582e-5 | 0.685 |
INTRON
CG10217 |
TF binding site
mE1_TFBS_sens
|
|
3R | 24018518 | 3R_24018518_SNP [dm3] 3R_28192796_SNP [dm6] | G | C | 3.608e-5 | 0.685 |
INTRON
CG34354 |
||
X | 21062408 | X_21062408_SNP [dm3] X_21191381_SNP [dm6] | C | A | 3.654e-5 | 0.685 |
INTERGENIC
|
transposable element
FlyBase
|
|
2R | 18087354 | 2R_18087354_INS [dm3] 2R_22199849_INS [dm6] | C | TCAAA | 3.668e-5 | 0.685 |
INTRON
Swim |
||
3L | 19013684 | 3L_19013684_SNP [dm3] 3L_19020584_SNP [dm6] | G | A | 3.723e-5 | 0.685 |
INTRON
nkd |
||
3R | 4939893 | 3R_4939893_SNP [dm3] 3R_9114171_SNP [dm6] | A | G | 3.731e-5 | 0.685 |
INTRON
pum |
||
3L | 9257508 | 3L_9257508_SNP [dm3] 3L_9264408_SNP [dm6] | C | A | 3.780e-5 | 0.685 |
INTRON
GluRIB |
||
3L | 8917773 | 3L_8917773_SNP [dm3] 3L_8924673_SNP [dm6] | C | T | 3.790e-5 | 0.685 |
INTRON
Tsp66E |
TF binding site
BDTNP1_TFBS_twi
|
|
2R | 12059625 | 2R_12059625_SNP [dm3] 2R_16172120_SNP [dm6] | A | G | 3.797e-5 | 0.685 |
SYNONYMOUS_CODING
Ptp52F |
TF binding site
mE1_TFBS_cad mE1_TFBS_HSA
|