DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.288e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2070 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	9257216	3L_9257216_SNP [dm3] 3L_9264116_SNP [dm6]	T	C	3.895e^-7	0.685	INTRON GluRIB
3R	23409934	3R_23409934_SNP [dm3] 3R_27584212_SNP [dm6]	G	T	1.593e^-6	0.685	SYNONYMOUS_CODING raps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7992929	3L_7992929_SNP [dm3] 3L_7999829_SNP [dm6]	A	C	2.308e^-6	0.685	INTRON nmo
3R	23409880	3R_23409880_SNP [dm3] 3R_27584158_SNP [dm6]	C	T	2.576e^-6	0.685	SYNONYMOUS_CODING raps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21060808	X_21060808_SNP [dm3] X_21189781_SNP [dm6]	G	C	3.275e^-6	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	9257218	3L_9257218_SNP [dm3] 3L_9264118_SNP [dm6]	A	G	4.693e^-6	0.685	INTRON GluRIB
3R	10497707	3R_10497707_SNP [dm3] 3R_14671985_SNP [dm6]	G	C	5.415e^-6	0.685	INTRON Meltrin	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4442763	3R_4442763_SNP [dm3] 3R_8617041_SNP [dm6]	T	A	5.786e^-6	0.685	INTRON 5-HT2B	TF binding site mE1_TFBS_inv
3L	2509145	3L_2509145_SNP [dm3] 3L_2509145_SNP [dm6]	A	T	5.896e^-6	0.685	INTRON Spn
2L	16001508	2L_16001508_SNP [dm3] 2L_16001508_SNP [dm6]	T	A	6.937e^-6	0.685	UPSTREAM CR43825 INTRON beat-Ic
3L	9257445	3L_9257445_DEL [dm3] 3L_9264345_DEL [dm6]	TATACA	T	7.477e^-6	0.685	INTRON GluRIB
3L	4797139	3L_4797139_SNP [dm3] 3L_4797139_SNP [dm6]	G	T	8.171e^-6	0.685	DOWNSTREAM RhoGEF64C INTERGENIC
2L	21062657	2L_21062657_SNP [dm3] 2L_21062657_SNP [dm6]	G	T	8.596e^-6	0.685	INTRON CG9265
X	21060776	X_21060776_SNP [dm3] X_21189749_SNP [dm6]	C	T	8.978e^-6	0.685	DOWNSTREAM CR45506 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	20388064	3R_20388064_SNP [dm3] 3R_24562342_SNP [dm6]	T	C	9.143e^-6	0.685	SYNONYMOUS_CODING CG13624	TF binding site mE1_TFBS_cad
3R	16070653	3R_16070653_INS [dm3] 3R_20244931_INS [dm6]	A	AA	9.359e^-6	0.685	UTR_3_PRIME Nlg4 DOWNSTREAM Nlg4
3R	26675853	3R_26675853_SNP [dm3] 3R_30850131_SNP [dm6]	T	C	9.552e^-6	0.685	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
X	17931816	X_17931816_SNP [dm3] X_18037783_SNP [dm6]	A	G	1.034e^-5	0.685	INTRON Sh
3R	18205460	3R_18205460_SNP [dm3] 3R_22379738_SNP [dm6]	C	T	1.086e^-5	0.685	SYNONYMOUS_CODING CG18596 UPSTREAM CG34149	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7802944	3L_7802944_SNP [dm3] 3L_7809844_SNP [dm6]	T	G	1.117e^-5	0.685	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7460573	3L_7460573_SNP [dm3] 3L_7467473_SNP [dm6]	C	T	1.208e^-5	0.685	SPLICE_SITE_REGION Tsp66A & 2 others INTRON Tsp66A & 2 others	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12059568	2R_12059568_SNP [dm3] 2R_16172063_SNP [dm6]	G	A	1.265e^-5	0.685	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	18518028	X_18518028_SNP [dm3] X_18623995_SNP [dm6]	T	C	1.291e^-5	0.685	DOWNSTREAM wgn INTERGENIC
X	1795216	X_1795216_SNP [dm3] X_1901183_SNP [dm6]	C	T	1.334e^-5	0.685	SYNONYMOUS_CODING CG32803 UPSTREAM arm & 1 other DOWNSTREAM CG32801	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	9257162	3L_9257162_SNP [dm3] 3L_9264062_SNP [dm6]	T	G	1.347e^-5	0.685	INTRON GluRIB
3L	7468106	3L_7468106_SNP [dm3] 3L_7475006_SNP [dm6]	G	A	1.440e^-5	0.685	UPSTREAM CG43292 INTERGENIC
3L	4797099	3L_4797099_SNP [dm3] 3L_4797099_SNP [dm6]	G	A	1.455e^-5	0.685	DOWNSTREAM RhoGEF64C INTERGENIC
3L	1210268	3L_1210268_SNP [dm3] 3L_1210268_SNP [dm6]	C	T	1.456e^-5	0.685	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
3L	4024179	3L_4024179_SNP [dm3] 3L_4024179_SNP [dm6]	A	G	1.502e^-5	0.685	SYNONYMOUS_CODING CG11594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26636873	3R_26636873_DEL [dm3] 3R_30811151_DEL [dm6]	GG	G	1.540e^-5	0.685	INTRON cindr
3L	8634362	3L_8634362_SNP [dm3] 3L_8641262_SNP [dm6]	A	C	1.576e^-5	0.685	INTRON Cpr66D
2L	16001435	2L_16001435_SNP [dm3] 2L_16001435_SNP [dm6]	A	C	1.607e^-5	0.685	UPSTREAM CR43825 INTRON beat-Ic
3L	4797140	3L_4797140_SNP [dm3] 3L_4797140_SNP [dm6]	G	T	1.643e^-5	0.685	DOWNSTREAM RhoGEF64C INTERGENIC
3R	18206387	3R_18206387_SNP [dm3] 3R_22380665_SNP [dm6]	A	G	1.684e^-5	0.685	NON_SYNONYMOUS_CODING CG34149 UPSTREAM CG43342 DOWNSTREAM CG18596	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	23564194	3R_23564194_SNP [dm3] 3R_27738472_SNP [dm6]	A	G	1.708e^-5	0.685	INTRON Ets98B
3R	25277983	3R_25277983_SNP [dm3] 3R_29452261_SNP [dm6]	T	C	1.722e^-5	0.685	INTRON Ptp99A
X	17932747	X_17932747_SNP [dm3] X_18038714_SNP [dm6]	T	C	1.749e^-5	0.685	INTRON Sh
X	21060815	X_21060815_SNP [dm3] X_21189788_SNP [dm6]	A	T	1.769e^-5	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	18474226	X_18474226_SNP [dm3] X_18580193_SNP [dm6]	T	A	1.834e^-5	0.685	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	1547968	3L_1547968_SNP [dm3] 3L_1547968_SNP [dm6]	T	C	1.887e^-5	0.685	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	16001424	2L_16001424_SNP [dm3] 2L_16001424_SNP [dm6]	G	A	1.900e^-5	0.685	UPSTREAM CR43825 INTRON beat-Ic
X	21060780	X_21060780_SNP [dm3] X_21189753_SNP [dm6]	T	C	1.934e^-5	0.685	DOWNSTREAM CR45506 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	4797019	3L_4797019_SNP [dm3] 3L_4797019_SNP [dm6]	C	A	1.982e^-5	0.685	DOWNSTREAM RhoGEF64C INTERGENIC
3R	14363450	3R_14363450_SNP [dm3] 3R_18537728_SNP [dm6]	C	T	1.988e^-5	0.685	INTRON fru
2R	3778487	2R_3778487_SNP [dm3] 2R_7890982_SNP [dm6]	C	G	2.044e^-5	0.685	INTRON CG30377
3R	27143094	3R_27143094_SNP [dm3] 3R_31317372_SNP [dm6]	C	T	2.085e^-5	0.685	INTRON CG34347
3R	25140268	3R_25140268_SNP [dm3] 3R_29314546_SNP [dm6]	T	G	2.186e^-5	0.685	DOWNSTREAM Cnx99A INTERGENIC
3L	2489411	3L_2489411_SNP [dm3] 3L_2489411_SNP [dm6]	C	A	2.214e^-5	0.685	UPSTREAM CG1146 INTRON CG45186 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18518025	X_18518025_SNP [dm3] X_18623992_SNP [dm6]	C	A	2.223e^-5	0.685	DOWNSTREAM wgn INTERGENIC
2R	15257445	2R_15257445_SNP [dm3] 2R_19369940_SNP [dm6]	A	T	2.288e^-5	0.685	SPLICE_SITE_REGION CG9416 INTRON CG9416
X	1795872	X_1795872_SNP [dm3] X_1901839_SNP [dm6]	G	A	2.296e^-5	0.685	UTR_5_PRIME CG32803 UPSTREAM CR43864 & 1 other DOWNSTREAM CG32801	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_ttk
3L	7802957	3L_7802957_INS [dm3] 3L_7809857_INS [dm6]	A	AC	2.313e^-5	0.685	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1210279	3L_1210279_SNP [dm3] 3L_1210279_SNP [dm6]	T	C	2.338e^-5	0.685	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
X	17935519	X_17935519_SNP [dm3] X_18041486_SNP [dm6]	T	A	2.369e^-5	0.685	INTRON Sh
3L	9257238	3L_9257238_SNP [dm3] 3L_9264138_SNP [dm6]	A	G	2.381e^-5	0.685	INTRON GluRIB
3L	1210278	3L_1210278_SNP [dm3] 3L_1210278_SNP [dm6]	T	G	2.487e^-5	0.685	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
2R	12018929	2R_12018929_SNP [dm3] 2R_16131424_SNP [dm6]	C	T	2.537e^-5	0.685	INTRON spin	TF binding site mE1_TFBS_cad
2L	16001449	2L_16001449_SNP [dm3] 2L_16001449_SNP [dm6]	T	A	2.551e^-5	0.685	UPSTREAM CR43825 INTRON beat-Ic
3L	7473809	3L_7473809_SNP [dm3] 3L_7480709_SNP [dm6]	T	A	2.578e^-5	0.685	INTERGENIC	TF binding site mE1_TFBS_inv
2R	4837187	2R_4837187_SNP [dm3] 2R_8949682_SNP [dm6]	C	T	2.615e^-5	0.685	SYNONYMOUS_CODING CG8229 INTRON CG8229 & 1 other
2R	19180574	2R_19180574_SNP [dm3] 2R_23293051_SNP [dm6]	G	C	2.628e^-5	0.685	INTERGENIC
X	17937141	X_17937141_SNP [dm3] X_18043108_SNP [dm6]	T	C	2.634e^-5	0.685	UPSTREAM CG15373 INTRON Sh
3R	24887355	3R_24887355_SNP [dm3] 3R_29061633_SNP [dm6]	G	A	2.728e^-5	0.685	SYNONYMOUS_CODING Cul5	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	17939764	X_17939764_SNP [dm3] X_18045731_SNP [dm6]	C	T	2.733e^-5	0.685	SYNONYMOUS_CODING CG15373 INTRON Sh
3L	9258218	3L_9258218_DEL [dm3] 3L_9265118_DEL [dm6]	AATATGGTATAC...	A	2.834e^-5	0.685	INTRON GluRIB
3R	20412962	3R_20412962_INS [dm3] 3R_24587240_INS [dm6]	G	GC	2.853e^-5	0.685	INTRON mld	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17937058	X_17937058_DEL [dm3] X_18043025_DEL [dm6]	AGCGA	A	2.912e^-5	0.685	INTRON Sh
3L	23026455	3L_23026455_SNP [dm3] 3L_23033355_SNP [dm6]	G	A	2.964e^-5	0.685	INTRON nrm
3L	7117509	3L_7117509_SNP [dm3] 3L_7124409_SNP [dm6]	A	G	2.984e^-5	0.685	SYNONYMOUS_CODING msl-3	TF binding site mE1_TFBS_sens
3R	23409736	3R_23409736_SNP [dm3] 3R_27584014_SNP [dm6]	G	A	3.026e^-5	0.685	SYNONYMOUS_CODING raps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17933040	X_17933040_DEL [dm3] X_18039007_DEL [dm6]	AA	A	3.062e^-5	0.685	INTRON Sh
X	1791005	X_1791005_SNP [dm3] X_1896972_SNP [dm6]	T	C	3.096e^-5	0.685	INTRON arm
X	17936778	X_17936778_SNP [dm3] X_18042745_SNP [dm6]	C	T	3.136e^-5	0.685	INTRON Sh
3L	8634594	3L_8634594_SNP [dm3] 3L_8641494_SNP [dm6]	G	C	3.236e^-5	0.685	INTRON Cpr66D
X	17939340	X_17939340_SNP [dm3] X_18045307_SNP [dm6]	C	T	3.247e^-5	0.685	SYNONYMOUS_CODING CG15373 INTRON Sh
X	17936821	X_17936821_INS [dm3] X_18042788_INS [dm6]	A	AAAAA	3.256e^-5	0.685	INTRON Sh
3L	6565907	3L_6565907_SNP [dm3] 3L_6572807_SNP [dm6]	C	G	3.293e^-5	0.685	INTRON CG18769 & 1 other
X	1796940	X_1796940_SNP [dm3] X_1902907_SNP [dm6]	T	C	3.297e^-5	0.685	UTR_5_PRIME CG32801 UPSTREAM CG32803 DOWNSTREAM Edem1 EXON CR43864	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17103294	2R_17103294_SNP [dm3] 2R_21215789_SNP [dm6]	T	C	3.335e^-5	0.685	SYNONYMOUS_CODING CG15661 UPSTREAM CG4302
X	17933278	X_17933278_SNP [dm3] X_18039245_SNP [dm6]	C	T	3.390e^-5	0.685	UTR_5_PRIME Sh
3R	4925113	3R_4925113_SNP [dm3] 3R_9099391_SNP [dm6]	T	G	3.439e^-5	0.685	INTRON pum
3L	1448781	3L_1448781_SNP [dm3] 3L_1448781_SNP [dm6]	T	A	3.463e^-5	0.685	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_sens
2R	17529496	2R_17529496_SNP [dm3] 2R_21641991_SNP [dm6]	T	G	3.471e^-5	0.685	INTERGENIC
3L	7473611	3L_7473611_SNP [dm3] 3L_7480511_SNP [dm6]	G	C	3.482e^-5	0.685	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1210255	3L_1210255_SNP [dm3] 3L_1210255_SNP [dm6]	C	A	3.540e^-5	0.685	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
3L	1210244	3L_1210244_INS [dm3] 3L_1210244_INS [dm6]	G	GGGGTTG	3.541e^-5	0.685	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
3L	1210252	3L_1210252_SNP [dm3] 3L_1210252_SNP [dm6]	G	A	3.541e^-5	0.685	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
3L	1210253	3L_1210253_INS [dm3] 3L_1210253_INS [dm6]	T	TCTGCTTTTTCTG...	3.541e^-5	0.685	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
3L	1210259	3L_1210259_MNP [dm3] 3L_1210259_MNP [dm6]	GACGA	ATTCC	3.541e^-5	0.685	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
3L	1210272	3L_1210272_INS [dm3] 3L_1210272_INS [dm6]	A	AGTCA	3.541e^-5	0.685	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
X	17933074	X_17933074_SNP [dm3] X_18039041_SNP [dm6]	G	A	3.542e^-5	0.685	INTRON Sh
3R	19588181	3R_19588181_SNP [dm3] 3R_23762459_SNP [dm6]	T	C	3.582e^-5	0.685	INTRON CG10217	TF binding site mE1_TFBS_sens
3R	24018518	3R_24018518_SNP [dm3] 3R_28192796_SNP [dm6]	G	C	3.608e^-5	0.685	INTRON CG34354
X	21062408	X_21062408_SNP [dm3] X_21191381_SNP [dm6]	C	A	3.654e^-5	0.685	INTERGENIC	transposable element FlyBase
2R	18087354	2R_18087354_INS [dm3] 2R_22199849_INS [dm6]	C	TCAAA	3.668e^-5	0.685	INTRON Swim
3L	19013684	3L_19013684_SNP [dm3] 3L_19020584_SNP [dm6]	G	A	3.723e^-5	0.685	INTRON nkd
3R	4939893	3R_4939893_SNP [dm3] 3R_9114171_SNP [dm6]	A	G	3.731e^-5	0.685	INTRON pum
3L	9257508	3L_9257508_SNP [dm3] 3L_9264408_SNP [dm6]	C	A	3.780e^-5	0.685	INTRON GluRIB
3L	8917773	3L_8917773_SNP [dm3] 3L_8924673_SNP [dm6]	C	T	3.790e^-5	0.685	INTRON Tsp66E	TF binding site BDTNP1_TFBS_twi
2R	12059625	2R_12059625_SNP [dm3] 2R_16172120_SNP [dm6]	A	G	3.797e^-5	0.685	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23409877	3R_23409877_SNP [dm3] 3R_27584155_SNP [dm6]	G	A	3.827e^-5	0.685	SYNONYMOUS_CODING raps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7994660	2L_7994660_SNP [dm3] 2L_7994660_SNP [dm6]	G	T	3.838e^-5	0.685	UTR_3_PRIME CG7227 UPSTREAM CR44996 & 1 other DOWNSTREAM CG7227	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
X	17933620	X_17933620_SNP [dm3] X_18039587_SNP [dm6]	C	A	3.840e^-5	0.685	START_GAINED Sh UTR_5_PRIME Sh UPSTREAM Sh
3L	10123822	3L_10123822_SNP [dm3] 3L_10130722_SNP [dm6]	A	T	3.858e^-5	0.685	INTRON dpr6
3R	23363365	3R_23363365_SNP [dm3] 3R_27537643_SNP [dm6]	A	T	3.874e^-5	0.685	UPSTREAM CR44288 EXON CR44289
3R	21759344	3R_21759344_SNP [dm3] 3R_25933622_SNP [dm6]	G	A	4.003e^-5	0.685	INTRON CCAP-R
2R	16965148	2R_16965148_SNP [dm3] 2R_21077643_SNP [dm6]	T	G	4.004e^-5	0.685	INTRON Treh
X	18574597	X_18574597_SNP [dm3] X_18680564_SNP [dm6]	T	G	4.010e^-5	0.685	INTERGENIC
3L	4338805	3L_4338805_SNP [dm3] 3L_4338805_SNP [dm6]	T	C	4.084e^-5	0.685	INTRON Cip4	TF binding site mE1_TFBS_inv
X	17932850	X_17932850_SNP [dm3] X_18038817_SNP [dm6]	C	T	4.127e^-5	0.685	INTRON Sh
X	17939623	X_17939623_SNP [dm3] X_18045590_SNP [dm6]	A	T	4.144e^-5	0.685	INTRON Sh & 1 other
3L	16999365	3L_16999365_SNP [dm3] 3L_17006265_SNP [dm6]	T	A	4.155e^-5	0.685	INTRON CG3764
2L	21938712	2L_21938712_INS [dm3] 2L_21938712_INS [dm6]	G	GAGG	4.231e^-5	0.685	INTERGENIC
X	17939728	X_17939728_SNP [dm3] X_18045695_SNP [dm6]	A	G	4.234e^-5	0.685	SYNONYMOUS_CODING CG15373 INTRON Sh
3L	6570974	3L_6570974_SNP [dm3] 3L_6577874_SNP [dm6]	C	T	4.277e^-5	0.685	INTRON CG18769 & 1 other
3R	25140246	3R_25140246_SNP [dm3] 3R_29314524_SNP [dm6]	A	G	4.283e^-5	0.685	DOWNSTREAM Cnx99A INTERGENIC
3L	1211188	3L_1211188_SNP [dm3] 3L_1211188_SNP [dm6]	G	T	4.364e^-5	0.685	UTR_5_PRIME LysD DOWNSTREAM LysC INTRON mwh
2L	11300270	2L_11300270_SNP [dm3] 2L_11300270_SNP [dm6]	G	T	4.416e^-5	0.685	INTERGENIC
3L	1528923	3L_1528923_SNP [dm3] 3L_1528923_SNP [dm6]	G	T	4.618e^-5	0.685	DOWNSTREAM Ir62a INTRON CG12090
X	12325220	X_12325220_SNP [dm3] X_12431187_SNP [dm6]	G	A	4.652e^-5	0.685	INTERGENIC
3R	18854888	3R_18854888_SNP [dm3] 3R_23029166_SNP [dm6]	G	C	4.658e^-5	0.685	INTERGENIC	regulatory region REDfly_CRMs
3L	7476977	3L_7476977_SNP [dm3] 3L_7483877_SNP [dm6]	T	G	4.659e^-5	0.685	INTERGENIC
3L	7474550	3L_7474550_SNP [dm3] 3L_7481450_SNP [dm6]	G	A	4.660e^-5	0.685	INTERGENIC
3L	1654174	3L_1654174_SNP [dm3] 3L_1654174_SNP [dm6]	A	G	4.662e^-5	0.685	DOWNSTREAM CG7971 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	7451136	3L_7451136_SNP [dm3] 3L_7458036_SNP [dm6]	T	A	4.688e^-5	0.685	INTRON ppk26
3R	20343282	3R_20343282_SNP [dm3] 3R_24517560_SNP [dm6]	G	A	4.739e^-5	0.685	UPSTREAM Pp1alpha-96A INTRON CG13617	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	17937071	X_17937071_SNP [dm3] X_18043038_SNP [dm6]	C	A	4.740e^-5	0.685	INTRON Sh
3L	4797108	3L_4797108_SNP [dm3] 3L_4797108_SNP [dm6]	T	C	4.746e^-5	0.685	DOWNSTREAM RhoGEF64C INTERGENIC
X	12325222	X_12325222_SNP [dm3] X_12431189_SNP [dm6]	T	G	4.876e^-5	0.685	INTERGENIC
3R	21895229	3R_21895229_SNP [dm3] 3R_26069507_SNP [dm6]	A	C	4.931e^-5	0.685	DOWNSTREAM CR44950 INTERGENIC
3R	6663318	3R_6663318_SNP [dm3] 3R_10837596_SNP [dm6]	C	A	4.941e^-5	0.685	INTRON Cad86C
X	18574604	X_18574604_SNP [dm3] X_18680571_SNP [dm6]	C	T	4.962e^-5	0.685	INTERGENIC
X	21062130	X_21062130_SNP [dm3] X_21191103_SNP [dm6]	T	C	4.971e^-5	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	17937815	X_17937815_SNP [dm3] X_18043782_SNP [dm6]	T	C	5.057e^-5	0.685	UPSTREAM CG15373 INTRON Sh
3R	24848476	3R_24848476_SNP [dm3] 3R_29022754_SNP [dm6]	C	T	5.119e^-5	0.685	UPSTREAM CR44264 EXON CR45567
2R	11693649	2R_11693649_SNP [dm3] 2R_15806144_SNP [dm6]	T	C	5.145e^-5	0.685	INTRON tun & 1 other
3L	9257472	3L_9257472_SNP [dm3] 3L_9264372_SNP [dm6]	A	G	5.160e^-5	0.685	INTRON GluRIB
3L	8634461	3L_8634461_SNP [dm3] 3L_8641361_SNP [dm6]	G	A	5.167e^-5	0.685	INTRON Cpr66D
2L	21748597	2L_21748597_SNP [dm3] 2L_21748597_SNP [dm6]	G	T	5.287e^-5	0.685	INTRON step	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26637160	3R_26637160_SNP [dm3] 3R_30811438_SNP [dm6]	T	C	5.350e^-5	0.685	INTRON cindr
2R	4825704	2R_4825704_SNP [dm3] 2R_8938199_SNP [dm6]	C	A	5.378e^-5	0.685	SPLICE_SITE_REGION FANCI SYNONYMOUS_CODING FANCI
3R	23570606	3R_23570606_SNP [dm3] 3R_27744884_SNP [dm6]	A	G	5.393e^-5	0.685	INTRON Ets98B
X	1792778	X_1792778_SNP [dm3] X_1898745_SNP [dm6]	T	C	5.401e^-5	0.685	INTRON arm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	15215747	X_15215747_SNP [dm3] X_15321714_SNP [dm6]	A	T	5.415e^-5	0.685	INTRON Top1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2493454	2L_2493454_SNP [dm3] 2L_2493454_SNP [dm6]	G	A	5.456e^-5	0.685	UPSTREAM Slh INTRON oaf	enhancer FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13631734	2R_13631734_SNP [dm3] 2R_17744229_SNP [dm6]	T	C	5.472e^-5	0.685	SYNONYMOUS_CODING Ir54a DOWNSTREAM CG4996
2L	7243413	2L_7243413_SNP [dm3] 2L_7243413_SNP [dm6]	C	T	5.513e^-5	0.685	INTRON Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17932838	X_17932838_SNP [dm3] X_18038805_SNP [dm6]	T	G	5.586e^-5	0.685	INTRON Sh
X	17936808	X_17936808_SNP [dm3] X_18042775_SNP [dm6]	T	C	5.587e^-5	0.685	INTRON Sh
X	17940318	X_17940318_SNP [dm3] X_18046285_SNP [dm6]	C	G	5.659e^-5	0.685	INTRON Sh & 1 other	TF binding site mE1_TFBS_chinmo
3R	4921223	3R_4921223_SNP [dm3] 3R_9095501_SNP [dm6]	G	C	5.677e^-5	0.685	INTRON pum
3R	24013358	3R_24013358_SNP [dm3] 3R_28187636_SNP [dm6]	G	T	5.679e^-5	0.685	INTRON CG34354	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22384706	3L_22384706_INS [dm3] 3L_22391606_INS [dm6]	A	AGTTTCTGCTCGG...	5.728e^-5	0.685	INTRON Ten-m
3R	17185023	3R_17185023_SNP [dm3] 3R_21359301_SNP [dm6]	G	A	5.746e^-5	0.685	UTR_5_PRIME pre-mod_mdg4_-L & 1 other UPSTREAM pre-mod_mdg4_-Z & 1 other INTRON mod_mdg4_ & 4 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3R	20789294	3R_20789294_SNP [dm3] 3R_24963572_SNP [dm6]	A	T	5.782e^-5	0.685	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9257484	3L_9257484_SNP [dm3] 3L_9264384_SNP [dm6]	T	C	5.829e^-5	0.685	INTRON GluRIB
3L	7464106	3L_7464106_SNP [dm3] 3L_7471006_SNP [dm6]	A	T	5.887e^-5	0.685	UPSTREAM CG8543 & 1 other INTERGENIC
3R	24013436	3R_24013436_SNP [dm3] 3R_28187714_SNP [dm6]	G	A	5.941e^-5	0.685	INTRON CG34354	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17939435	X_17939435_SNP [dm3] X_18045402_SNP [dm6]	T	A	5.979e^-5	0.685	INTRON Sh & 1 other
X	17932777	X_17932777_SNP [dm3] X_18038744_SNP [dm6]	G	A	6.082e^-5	0.685	INTRON Sh
X	21062404	X_21062404_INS [dm3] X_21191377_INS [dm6]	C	CAATAGCCGACTCGACTCTG...	6.097e^-5	0.685	INTERGENIC	transposable element FlyBase
3L	8164741	3L_8164741_SNP [dm3] 3L_8171641_SNP [dm6]	T	G	6.154e^-5	0.685	SYNONYMOUS_CODING RecQ4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11256481	2L_11256481_SNP [dm3] 2L_11256481_SNP [dm6]	A	G	6.214e^-5	0.685	SYNONYMOUS_CODING ab INTRON ab	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7466365	3L_7466365_SNP [dm3] 3L_7473265_SNP [dm6]	C	T	6.220e^-5	0.685	DOWNSTREAM CG8541 INTERGENIC
3L	7460813	3L_7460813_SNP [dm3] 3L_7467713_SNP [dm6]	A	C	6.226e^-5	0.685	UTR_3_PRIME CG42660 & 1 other INTRON Tsp66A & 2 others	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17932780	X_17932780_SNP [dm3] X_18038747_SNP [dm6]	C	G	6.269e^-5	0.685	INTRON Sh
3L	19013670	3L_19013670_SNP [dm3] 3L_19020570_SNP [dm6]	G	A	6.322e^-5	0.685	INTRON nkd
2L	4659996	2L_4659996_SNP [dm3] 2L_4659996_SNP [dm6]	C	G	6.360e^-5	0.685	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17931715	X_17931715_SNP [dm3] X_18037682_SNP [dm6]	C	G	6.392e^-5	0.685	INTRON Sh
3L	7474656	3L_7474656_SNP [dm3] 3L_7481556_SNP [dm6]	G	A	6.398e^-5	0.685	INTERGENIC
3R	26627169	3R_26627169_SNP [dm3] 3R_30801447_SNP [dm6]	A	C	6.401e^-5	0.685	INTRON wts
3L	579770	3L_579770_SNP [dm3] 3L_579770_SNP [dm6]	C	T	6.429e^-5	0.685	UTR_3_PRIME hipk
3L	1212359	3L_1212359_SNP [dm3] 3L_1212359_SNP [dm6]	T	G	6.436e^-5	0.685	UPSTREAM LysE INTRON mwh	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8022396	3L_8022396_SNP [dm3] 3L_8029296_SNP [dm6]	C	A	6.441e^-5	0.685	UPSTREAM tRNA:CR32370 INTRON nmo	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2L	10500656	2L_10500656_SNP [dm3] 2L_10500656_SNP [dm6]	A	C	6.458e^-5	0.685	INTRON Myo31DF
3L	1214092	3L_1214092_SNP [dm3] 3L_1214092_SNP [dm6]	G	C	6.467e^-5	0.685	DOWNSTREAM LysE INTRON mwh
3R	21594596	3R_21594596_INS [dm3] 3R_25768874_INS [dm6]	A	ATAA	6.515e^-5	0.685	INTERGENIC
3L	1210251	3L_1210251_SNP [dm3] 3L_1210251_SNP [dm6]	G	T	6.534e^-5	0.685	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
X	21061768	X_21061768_SNP [dm3] X_21190741_SNP [dm6]	A	T	6.566e^-5	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	967229	X_967229_INS [dm3] X_1073196_INS [dm6]	C	CGTTTCCACAGTTTTTCAGC...	6.573e^-5	0.685	UTR_3_PRIME CG3655 DOWNSTREAM CG3655 INTRON CR44779
3R	23567642	3R_23567642_SNP [dm3] 3R_27741920_SNP [dm6]	C	T	6.814e^-5	0.689	INTRON Ets98B
2L	3089620	2L_3089620_SNP [dm3] 2L_3089620_SNP [dm6]	A	G	6.815e^-5	0.689	INTRON toc	TF binding site mE1_TFBS_HSA
X	21062793	X_21062793_SNP [dm3] X_21191766_SNP [dm6]	G	C	6.816e^-5	0.689	INTERGENIC	transposable element FlyBase
3L	22380330	3L_22380330_SNP [dm3] 3L_22387230_SNP [dm6]	C	G	6.904e^-5	0.689	INTRON Ten-m	TF binding site mE1_TFBS_sens
3L	1210274	3L_1210274_SNP [dm3] 3L_1210274_SNP [dm6]	G	A	6.929e^-5	0.689	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
X	17932779	X_17932779_SNP [dm3] X_18038746_SNP [dm6]	G	C	6.966e^-5	0.689	INTRON Sh
3R	24885145	3R_24885145_DEL [dm3] 3R_29059423_DEL [dm6]	ATCAATCTTCAGGAGGTGTG...	A	7.126e^-5	0.689	UTR_3_PRIME Cul5 DOWNSTREAM Sirt7
3R	17732825	3R_17732825_SNP [dm3] 3R_21907103_SNP [dm6]	A	G	7.128e^-5	0.689	UTR_3_PRIME CG6678
2L	3826485	2L_3826485_SNP [dm3] 2L_3826485_SNP [dm6]	G	C	7.133e^-5	0.689	SYNONYMOUS_CODING slp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17932836	X_17932836_SNP [dm3] X_18038803_SNP [dm6]	G	A	7.150e^-5	0.689	INTRON Sh
3L	7709985	3L_7709985_SNP [dm3] 3L_7716885_SNP [dm6]	C	T	7.179e^-5	0.689	UPSTREAM Ank2 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_HSA
3R	23922179	3R_23922179_SNP [dm3] 3R_28096457_SNP [dm6]	T	A	7.220e^-5	0.689	INTERGENIC
X	21062419	X_21062419_SNP [dm3] X_21191392_SNP [dm6]	T	C	7.224e^-5	0.689	INTERGENIC	transposable element FlyBase
3L	7475874	3L_7475874_SNP [dm3] 3L_7482774_SNP [dm6]	T	A	7.246e^-5	0.689	INTERGENIC
X	1761934	X_1761934_SNP [dm3] X_1867901_SNP [dm6]	A	C	7.339e^-5	0.689	NON_SYNONYMOUS_CODING Pex5 UPSTREAM CG14803	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	9738745	3L_9738745_SNP [dm3] 3L_9745645_SNP [dm6]	A	T	7.430e^-5	0.689	INTRON CG42268
3L	7465916	3L_7465916_SNP [dm3] 3L_7472816_SNP [dm6]	G	A	7.439e^-5	0.689	DOWNSTREAM CG8541 INTERGENIC
3L	8917774	3L_8917774_SNP [dm3] 3L_8924674_SNP [dm6]	A	T	7.443e^-5	0.689	INTRON Tsp66E	TF binding site BDTNP1_TFBS_twi
3R	24904232	3R_24904232_SNP [dm3] 3R_29078510_SNP [dm6]	T	G	7.449e^-5	0.689	INTRON CG11873
3L	9554609	3L_9554609_SNP [dm3] 3L_9561509_SNP [dm6]	T	C	7.467e^-5	0.689	INTRON CG42673
X	17939028	X_17939028_SNP [dm3] X_18044995_SNP [dm6]	G	A	7.507e^-5	0.689	INTRON Sh & 1 other
2R	12059531	2R_12059531_SNP [dm3] 2R_16172026_SNP [dm6]	C	T	7.558e^-5	0.689	INTRON Ptp52F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	17939461	X_17939461_SNP [dm3] X_18045428_SNP [dm6]	A	C	7.573e^-5	0.689	INTRON Sh & 1 other
X	21062441	X_21062441_SNP [dm3] X_21191414_SNP [dm6]	G	A	7.623e^-5	0.689	INTERGENIC	transposable element FlyBase
3L	14051137	3L_14051137_SNP [dm3] 3L_14058037_SNP [dm6]	G	A	7.624e^-5	0.689	INTRON CG32138
3R	18205466	3R_18205466_SNP [dm3] 3R_22379744_SNP [dm6]	G	A	7.639e^-5	0.689	SYNONYMOUS_CODING CG18596 UPSTREAM CG34149	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19270918	3L_19270918_SNP [dm3] 3L_19277818_SNP [dm6]	G	A	7.733e^-5	0.689	INTRON CG14086
2L	11210143	2L_11210143_SNP [dm3] 2L_11210143_SNP [dm6]	T	A	7.745e^-5	0.689	UPSTREAM ab INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1208996	3L_1208996_INS [dm3] 3L_1208996_INS [dm6]	G	CGAAC	7.761e^-5	0.689	UTR_5_PRIME mwh INTRON mwh	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_Trl
3R	9574184	3R_9574184_SNP [dm3] 3R_13748462_SNP [dm6]	C	T	7.783e^-5	0.689	INTRON CG34383
3R	24013380	3R_24013380_SNP [dm3] 3R_28187658_SNP [dm6]	C	A	7.844e^-5	0.689	INTRON CG34354	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6644562	2R_6644562_SNP [dm3] 2R_10757057_SNP [dm6]	G	A	7.848e^-5	0.689	SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19588180	3R_19588180_SNP [dm3] 3R_23762458_SNP [dm6]	C	T	7.921e^-5	0.689	INTRON CG10217	TF binding site mE1_TFBS_sens
3R	23565288	3R_23565288_SNP [dm3] 3R_27739566_SNP [dm6]	A	C	7.938e^-5	0.689	INTRON Ets98B
3R	14068369	3R_14068369_SNP [dm3] 3R_18242647_SNP [dm6]	C	T	7.942e^-5	0.689	UTR_5_PRIME 14-3-3epsilon UPSTREAM 14-3-3epsilon & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	7469910	3L_7469910_SNP [dm3] 3L_7476810_SNP [dm6]	C	T	7.977e^-5	0.689	DOWNSTREAM CG43292 INTERGENIC
X	1844893	X_1844893_SNP [dm3] X_1950860_SNP [dm6]	C	T	7.992e^-5	0.689	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	22369576	3L_22369576_SNP [dm3] 3L_22376476_SNP [dm6]	T	C	8.087e^-5	0.689	INTRON Ten-m	TF binding site mE1_TFBS_inv
3L	9257156	3L_9257156_SNP [dm3] 3L_9264056_SNP [dm6]	A	G	8.097e^-5	0.689	INTRON GluRIB
3R	24013311	3R_24013311_SNP [dm3] 3R_28187589_SNP [dm6]	A	G	8.106e^-5	0.689	INTRON CG34354	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10192215	3L_10192215_SNP [dm3] 3L_10199115_SNP [dm6]	A	T	8.155e^-5	0.689	INTRON ect
2R	10720878	2R_10720878_SNP [dm3] 2R_14833373_SNP [dm6]	T	G	8.169e^-5	0.689	NON_SYNONYMOUS_CODING CG10205
X	17937335	X_17937335_SNP [dm3] X_18043302_SNP [dm6]	A	C	8.288e^-5	0.689	UPSTREAM CG15373 INTRON Sh
3L	6580836	3L_6580836_SNP [dm3] 3L_6587736_SNP [dm6]	C	T	8.338e^-5	0.689	SPLICE_SITE_REGION jv UTR_5_PRIME jv INTRON CG18769 & 1 other
3L	554262	3L_554262_SNP [dm3] 3L_554262_SNP [dm6]	A	G	8.383e^-5	0.689	INTRON hipk
3L	7464163	3L_7464163_SNP [dm3] 3L_7471063_SNP [dm6]	G	A	8.427e^-5	0.689	UPSTREAM CG8543 & 1 other INTERGENIC
3L	5472824	3L_5472824_SNP [dm3] 3L_5479724_SNP [dm6]	G	A	8.453e^-5	0.689	UPSTREAM CG4835 INTERGENIC
3L	18678404	3L_18678404_SNP [dm3] 3L_18685304_SNP [dm6]	A	G	8.455e^-5	0.689	SYNONYMOUS_CODING Cyp12c1	TF binding site mE1_TFBS_sens
3L	18678458	3L_18678458_SNP [dm3] 3L_18685358_SNP [dm6]	A	G	8.455e^-5	0.689	SYNONYMOUS_CODING Cyp12c1
X	17936826	X_17936826_SNP [dm3] X_18042793_SNP [dm6]	G	C	8.487e^-5	0.689	INTRON Sh
2R	15257315	2R_15257315_SNP [dm3] 2R_19369810_SNP [dm6]	A	T	8.505e^-5	0.689	SYNONYMOUS_CODING CG9416
3R	347750	3R_347750_INS [dm3] 3R_4522028_INS [dm6]	C	CTA	8.554e^-5	0.689	INTRON CG34357
3L	4436736	3L_4436736_SNP [dm3] 3L_4436736_SNP [dm6]	T	G	8.562e^-5	0.689	UTR_5_PRIME CG15021 DOWNSTREAM nAChRbeta1	TF binding site mE1_TFBS_cad
2L	4738498	2L_4738498_SNP [dm3] 2L_4738498_SNP [dm6]	G	A	8.719e^-5	0.697	INTRON CG15630	TF binding site mE1_TFBS_inv
2L	10813491	2L_10813491_DEL [dm3] 2L_10813491_DEL [dm6]	ATA	A	8.795e^-5	0.697	INTRON Nos
3R	19713081	3R_19713081_SNP [dm3] 3R_23887359_SNP [dm6]	G	A	8.905e^-5	0.697	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3L	7123469	3L_7123469_SNP [dm3] 3L_7130369_SNP [dm6]	A	G	8.908e^-5	0.697	UPSTREAM CG8628 DOWNSTREAM CG15829 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	7123412	3L_7123412_SNP [dm3] 3L_7130312_SNP [dm6]	T	A	8.921e^-5	0.697	UPSTREAM CG8628 DOWNSTREAM CG15829 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	22380312	3L_22380312_INS [dm3] 3L_22387212_INS [dm6]	A	ATTCCAAAGGAGA...	8.939e^-5	0.697	INTRON Ten-m	TF binding site mE1_TFBS_sens
3L	8634569	3L_8634569_SNP [dm3] 3L_8641469_SNP [dm6]	G	C	8.949e^-5	0.697	INTRON Cpr66D
X	11188083	X_11188083_SNP [dm3] X_11294050_SNP [dm6]	C	A	8.949e^-5	0.697	UPSTREAM CG44422 INTRON CG44422	TF binding site BDTNP1_TFBS_dl
3R	21594580	3R_21594580_SNP [dm3] 3R_25768858_SNP [dm6]	G	T	9.019e^-5	0.699	INTERGENIC
3R	18983947	3R_18983947_SNP [dm3] 3R_23158225_SNP [dm6]	A	G	9.099e^-5	0.7	SYNONYMOUS_CODING VhaAC39-2 UPSTREAM unk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
X	1746737	X_1746737_DEL [dm3] X_1852704_DEL [dm6]	TACATAT	T	9.104e^-5	0.7	UTR_3_PRIME CG42666
X	17933650	X_17933650_SNP [dm3] X_18039617_SNP [dm6]	C	T	9.172e^-5	0.702	UTR_5_PRIME Sh UPSTREAM Sh
X	17935515	X_17935515_SNP [dm3] X_18041482_SNP [dm6]	A	G	9.403e^-5	0.714	INTRON Sh
3L	1209944	3L_1209944_SNP [dm3] 3L_1209944_SNP [dm6]	G	C	9.422e^-5	0.714	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh	TF binding site mE1_TFBS_inv
3R	21657131	3R_21657131_SNP [dm3] 3R_25831409_SNP [dm6]	A	G	9.435e^-5	0.714	UPSTREAM Mst57Db & 1 other DOWNSTREAM Mst57Da INTERGENIC	regulatory region REDfly_CRMs
3L	12652280	3L_12652280_SNP [dm3] 3L_12659180_SNP [dm6]	G	A	9.476e^-5	0.714	EXON CR44553
3L	7462930	3L_7462930_SNP [dm3] 3L_7469830_SNP [dm6]	C	T	9.520e^-5	0.714	NON_SYNONYMOUS_CODING CG8543
3L	22343411	3L_22343411_SNP [dm3] 3L_22350311_SNP [dm6]	G	A	9.565e^-5	0.715	INTRON Ten-m	TF binding site BDTNP1_TFBS_twi
3L	17578252	3L_17578252_INS [dm3] 3L_17585152_INS [dm6]	T	TATAATTCTTATAAATT...	9.793e^-5	0.729	INTRON Eip74EF
3R	19588208	3R_19588208_SNP [dm3] 3R_23762486_SNP [dm6]	A	T	9.909e^-5	0.732	INTRON CG10217	TF binding site mE1_TFBS_sens
X	15991329	X_15991329_SNP [dm3] X_16097296_SNP [dm6]	A	C	9.988e^-5	0.732	SYNONYMOUS_CODING CG42353 UTR_5_PRIME CG42354 UPSTREAM CG42354	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	7117548	3L_7117548_SNP [dm3] 3L_7124448_SNP [dm6]	C	T	1.001e^-4	0.732	SYNONYMOUS_CODING msl-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	7450780	3L_7450780_SNP [dm3] 3L_7457680_SNP [dm6]	A	G	1.010e^-4	0.732	INTRON ppk26
3L	7450802	3L_7450802_SNP [dm3] 3L_7457702_SNP [dm6]	T	C	1.010e^-4	0.732	SPLICE_SITE_REGION ppk26 SYNONYMOUS_CODING ppk26
3L	7450835	3L_7450835_SNP [dm3] 3L_7457735_SNP [dm6]	T	C	1.010e^-4	0.732	SYNONYMOUS_CODING ppk26
3L	7123366	3L_7123366_SNP [dm3] 3L_7130266_SNP [dm6]	G	T	1.014e^-4	0.732	UPSTREAM CG8628 DOWNSTREAM CG15829 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	24009823	3R_24009823_SNP [dm3] 3R_28184101_SNP [dm6]	C	T	1.017e^-4	0.732	INTRON CG34354
X	2944197	X_2944197_SNP [dm3] X_3050164_SNP [dm6]	A	T	1.024e^-4	0.732	INTRON kirre
X	2944225	X_2944225_SNP [dm3] X_3050192_SNP [dm6]	T	A	1.027e^-4	0.732	INTRON kirre
3L	7461154	3L_7461154_SNP [dm3] 3L_7468054_SNP [dm6]	G	A	1.032e^-4	0.732	SYNONYMOUS_CODING Tsp66A UTR_3_PRIME CG42660 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	7120465	3L_7120465_DEL [dm3] 3L_7127365_DEL [dm6]	AATTTTATATAGT...	TC	1.035e^-4	0.732	DOWNSTREAM CG8629 INTRON BBS1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16999296	3L_16999296_SNP [dm3] 3L_17006196_SNP [dm6]	A	G	1.036e^-4	0.732	INTRON CG3764
X	21061777	X_21061777_DEL [dm3] X_21190750_DEL [dm6]	AA	G	1.044e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4504084	3R_4504084_SNP [dm3] 3R_8678362_SNP [dm6]	A	G	1.048e^-4	0.732	SYNONYMOUS_CODING CG11755 DOWNSTREAM CG33325 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16799884	2R_16799884_SNP [dm3] 2R_20912379_SNP [dm6]	A	T	1.050e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10001289	2R_10001289_SNP [dm3] 2R_14113784_SNP [dm6]	A	G	1.054e^-4	0.732	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	19695912	3L_19695912_INS [dm3] 3L_19702812_INS [dm6]	A	ATGTA	1.057e^-4	0.732	INTRON serp
3L	10387233	3L_10387233_SNP [dm3] 3L_10394133_SNP [dm6]	T	A	1.057e^-4	0.732	INTERGENIC
2R	16635598	2R_16635598_SNP [dm3] 2R_20748093_SNP [dm6]	T	C	1.068e^-4	0.734	INTRON dpr
X	2944057	X_2944057_SNP [dm3] X_3050024_SNP [dm6]	A	T	1.080e^-4	0.734	INTRON kirre
X	7854213	X_7854213_SNP [dm3] X_7960180_SNP [dm6]	T	C	1.080e^-4	0.734	UPSTREAM sws INTRON sws EXON CR45620	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	1794002	X_1794002_SNP [dm3] X_1899969_SNP [dm6]	A	C	1.082e^-4	0.734	UPSTREAM arm DOWNSTREAM CG32803 INTRON arm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	7582222	3L_7582222_SNP [dm3] 3L_7589122_SNP [dm6]	A	C	1.082e^-4	0.734	SYNONYMOUS_CODING CG7716
3L	7474857	3L_7474857_SNP [dm3] 3L_7481757_SNP [dm6]	A	C	1.088e^-4	0.734	INTERGENIC
X	17932642	X_17932642_SNP [dm3] X_18038609_SNP [dm6]	G	A	1.094e^-4	0.734	INTRON Sh
3R	23923848	3R_23923848_SNP [dm3] 3R_28098126_SNP [dm6]	T	G	1.103e^-4	0.734	INTERGENIC
2R	7577610	2R_7577610_SNP [dm3] 2R_11690105_SNP [dm6]	T	G	1.104e^-4	0.734	INTRON wal
2L	5400046	2L_5400046_SNP [dm3] 2L_5400046_SNP [dm6]	C	T	1.107e^-4	0.734	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22384496	3L_22384496_SNP [dm3] 3L_22391396_SNP [dm6]	T	C	1.108e^-4	0.734	INTRON Ten-m
3L	22384352	3L_22384352_SNP [dm3] 3L_22391252_SNP [dm6]	A	C	1.109e^-4	0.734	INTRON Ten-m
3L	7465400	3L_7465400_SNP [dm3] 3L_7472300_SNP [dm6]	G	A	1.112e^-4	0.734	NON_SYNONYMOUS_CODING CG8541	TF binding site mE1_TFBS_cad
3R	24009713	3R_24009713_SNP [dm3] 3R_28183991_SNP [dm6]	T	A	1.120e^-4	0.735	INTRON CG34354
2R	13063549	2R_13063549_SNP [dm3] 2R_17176044_SNP [dm6]	C	T	1.130e^-4	0.735	INTERGENIC
X	17933058	X_17933058_DEL [dm3] X_18039025_DEL [dm6]	TA	T	1.133e^-4	0.735	INTRON Sh
3R	17885067	3R_17885067_SNP [dm3] 3R_22059345_SNP [dm6]	C	T	1.135e^-4	0.735	INTRON how
3L	15767769	3L_15767769_SNP [dm3] 3L_15774669_SNP [dm6]	G	A	1.138e^-4	0.735	INTERGENIC
3R	23910645	3R_23910645_SNP [dm3] 3R_28084923_SNP [dm6]	G	C	1.141e^-4	0.735	UTR_3_PRIME CG34362 INTRON CG34362
X	15215833	X_15215833_SNP [dm3] X_15321800_SNP [dm6]	A	C	1.144e^-4	0.735	INTRON Top1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11129399	2L_11129399_SNP [dm3] 2L_11129399_SNP [dm6]	G	A	1.144e^-4	0.735	SYNONYMOUS_CODING RfC38 DOWNSTREAM Nup160	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	17939494	X_17939494_SNP [dm3] X_18045461_SNP [dm6]	G	T	1.160e^-4	0.742	INTRON Sh & 1 other
3L	3148321	3L_3148321_SNP [dm3] 3L_3148321_SNP [dm6]	T	A	1.164e^-4	0.742	UTR_5_PRIME CG12082 UPSTREAM BtbVII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	16905238	3R_16905238_SNP [dm3] 3R_21079516_SNP [dm6]	A	T	1.173e^-4	0.742	INTRON HHEX
X	17939160	X_17939160_SNP [dm3] X_18045127_SNP [dm6]	A	C	1.176e^-4	0.742	INTRON Sh & 1 other
2L	5028661	2L_5028661_SNP [dm3] 2L_5028661_SNP [dm6]	A	T	1.178e^-4	0.742	UPSTREAM vkg & 1 other INTERGENIC	regulatory region REDfly_CRMs
3R	24882225	3R_24882225_SNP [dm3] 3R_29056503_SNP [dm6]	A	G	1.178e^-4	0.742	DOWNSTREAM CG11843 INTRON Sirt7
3R	6975871	3R_6975871_INS [dm3] 3R_11150149_INS [dm6]	A	AGCATGCAAA	1.188e^-4	0.745	DOWNSTREAM Ugt86Di INTERGENIC
3L	1210266	3L_1210266_SNP [dm3] 3L_1210266_SNP [dm6]	T	A	1.199e^-4	0.748	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
X	17938463	X_17938463_SNP [dm3] X_18044430_SNP [dm6]	G	T	1.200e^-4	0.748	NON_SYNONYMOUS_CODING CG15373 INTRON Sh
3R	4426896	3R_4426896_SNP [dm3] 3R_8601174_SNP [dm6]	G	C	1.208e^-4	0.75	INTRON 5-HT2B
2L	11024930	2L_11024930_DEL [dm3] 2L_11024930_DEL [dm6]	TGTTT	T	1.217e^-4	0.753	INTRON Samuel
3L	22499450	3L_22499450_INS [dm3] 3L_22506350_INS [dm6]	C	CCATTATATAGAACGG...	1.220e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9248263	3R_9248263_SNP [dm3] 3R_13422541_SNP [dm6]	T	C	1.249e^-4	0.759	SYNONYMOUS_CODING Ir87a
3R	26519466	3R_26519466_SNP [dm3] 3R_30693744_SNP [dm6]	G	A	1.251e^-4	0.759	UTR_3_PRIME CG12069 DOWNSTREAM Spn100A & 1 other
3L	18363377	3L_18363377_SNP [dm3] 3L_18370277_SNP [dm6]	T	A	1.252e^-4	0.759	INTERGENIC
3L	6567109	3L_6567109_SNP [dm3] 3L_6574009_SNP [dm6]	A	C	1.253e^-4	0.759	INTRON CG18769 & 1 other
3R	4504312	3R_4504312_SNP [dm3] 3R_8678590_SNP [dm6]	C	T	1.255e^-4	0.759	SYNONYMOUS_CODING CG11755 DOWNSTREAM CG33325 & 1 other	TF binding site mE1_TFBS_cad
X	18580422	X_18580422_SNP [dm3] X_18686389_SNP [dm6]	T	C	1.259e^-4	0.759	INTRON phm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	4987716	3R_4987716_SNP [dm3] 3R_9161994_SNP [dm6]	C	T	1.259e^-4	0.759	INTRON pum
X	17941522	X_17941522_SNP [dm3] X_18047489_SNP [dm6]	C	T	1.263e^-4	0.759	SYNONYMOUS_CODING CG15373 INTRON Sh	TF binding site mE1_TFBS_chinmo
2L	15758383	2L_15758383_SNP [dm3] 2L_15758383_SNP [dm6]	T	C	1.276e^-4	0.763	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11300269	2L_11300269_SNP [dm3] 2L_11300269_SNP [dm6]	C	T	1.277e^-4	0.763	INTERGENIC
3L	7469676	3L_7469676_SNP [dm3] 3L_7476576_SNP [dm6]	G	A	1.290e^-4	0.768	DOWNSTREAM CG43292 INTERGENIC
2R	11693650	2R_11693650_SNP [dm3] 2R_15806145_SNP [dm6]	C	T	1.295e^-4	0.768	INTRON tun & 1 other
3R	20387337	3R_20387337_SNP [dm3] 3R_24561615_SNP [dm6]	A	G	1.298e^-4	0.768	SYNONYMOUS_CODING CG13624	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22384503	3L_22384503_SNP [dm3] 3L_22391403_SNP [dm6]	C	A	1.311e^-4	0.771	INTRON Ten-m
X	17933026	X_17933026_SNP [dm3] X_18038993_SNP [dm6]	A	T	1.316e^-4	0.771	INTRON Sh
3R	19515224	3R_19515224_SNP [dm3] 3R_23689502_SNP [dm6]	G	A	1.320e^-4	0.771	UTR_3_PRIME CG10254
3R	18204026	3R_18204026_SNP [dm3] 3R_22378304_SNP [dm6]	G	A	1.320e^-4	0.771	SYNONYMOUS_CODING CG18596
X	8976717	X_8976717_SNP [dm3] X_9082684_SNP [dm6]	G	C	1.332e^-4	0.771	UTR_3_PRIME HP1b UPSTREAM APC4 DOWNSTREAM HP1b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
2L	6846195	2L_6846195_SNP [dm3] 2L_6846195_SNP [dm6]	T	C	1.334e^-4	0.771	INTERGENIC
X	17936783	X_17936783_SNP [dm3] X_18042750_SNP [dm6]	C	T	1.337e^-4	0.771	INTRON Sh
3R	21594598	3R_21594598_SNP [dm3] 3R_25768876_SNP [dm6]	C	T	1.343e^-4	0.771	INTERGENIC
3R	14063390	3R_14063390_SNP [dm3] 3R_18237668_SNP [dm6]	A	T	1.347e^-4	0.771	INTRON repo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7462892	3L_7462892_SNP [dm3] 3L_7469792_SNP [dm6]	A	G	1.349e^-4	0.771	SYNONYMOUS_CODING CG8543 DOWNSTREAM Tsp66A & 2 others
3R	21395688	3R_21395688_SNP [dm3] 3R_25569966_SNP [dm6]	C	T	1.357e^-4	0.771	INTRON msi
X	1758758	X_1758758_SNP [dm3] X_1864725_SNP [dm6]	T	C	1.373e^-4	0.771	NON_SYNONYMOUS_CODING CG14814	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	14225630	2R_14225630_SNP [dm3] 2R_18338125_SNP [dm6]	G	T	1.375e^-4	0.771	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7886737	3L_7886737_SNP [dm3] 3L_7893637_SNP [dm6]	T	C	1.382e^-4	0.771	INTRON CG32365	TF binding site mE1_TFBS_cad
3R	23058068	3R_23058068_SNP [dm3] 3R_27232346_SNP [dm6]	T	C	1.382e^-4	0.771	INTRON CG31064	TF binding site mE1_TFBS_HSA
X	12095835	X_12095835_SNP [dm3] X_12201802_SNP [dm6]	A	G	1.385e^-4	0.771	INTRON Ten-a
2L	4736979	2L_4736979_SNP [dm3] 2L_4736979_SNP [dm6]	G	A	1.387e^-4	0.771	INTRON CG15630	TF binding site mE1_TFBS_cad
2L	4737019	2L_4737019_SNP [dm3] 2L_4737019_SNP [dm6]	A	T	1.387e^-4	0.771	INTRON CG15630	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	26804843	3R_26804843_SNP [dm3] 3R_30979121_SNP [dm6]	G	A	1.389e^-4	0.771	INTRON 5-HT7
X	17932868	X_17932868_SNP [dm3] X_18038835_SNP [dm6]	T	A	1.389e^-4	0.771	INTRON Sh
X	17941803	X_17941803_SNP [dm3] X_18047770_SNP [dm6]	C	G	1.394e^-4	0.771	SYNONYMOUS_CODING CG15373 INTRON Sh	TF binding site mE1_TFBS_chinmo
X	17933791	X_17933791_SNP [dm3] X_18039758_SNP [dm6]	G	A	1.396e^-4	0.771	UTR_5_PRIME Sh UPSTREAM Sh
3R	25118855	3R_25118855_SNP [dm3] 3R_29293133_SNP [dm6]	A	G	1.397e^-4	0.771	DOWNSTREAM CG14506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	7110091	3R_7110091_SNP [dm3] 3R_11284369_SNP [dm6]	G	C	1.420e^-4	0.78	INTRON CR31386	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6311549	2L_6311549_SNP [dm3] 2L_6311549_SNP [dm6]	C	T	1.421e^-4	0.78	INTRON Ddr
3L	18590783	3L_18590783_SNP [dm3] 3L_18597683_SNP [dm6]	T	A	1.431e^-4	0.78	UPSTREAM CR45390 DOWNSTREAM CR45389 INTERGENIC
3L	1557353	3L_1557353_SNP [dm3] 3L_1557353_SNP [dm6]	T	C	1.432e^-4	0.78	SYNONYMOUS_CODING CG12099 UPSTREAM Pex10	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5686398	3L_5686398_SNP [dm3] 3L_5693298_SNP [dm6]	G	C	1.443e^-4	0.78	INTRON sif
X	17929782	X_17929782_SNP [dm3] X_18035749_SNP [dm6]	G	T	1.444e^-4	0.78	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11455598	3R_11455598_SNP [dm3] 3R_15629876_SNP [dm6]	C	G	1.448e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	22140546	3R_22140546_SNP [dm3] 3R_26314824_SNP [dm6]	T	A	1.457e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_inv
X	17932948	X_17932948_SNP [dm3] X_18038915_SNP [dm6]	C	T	1.458e^-4	0.78	INTRON Sh
3R	4925305	3R_4925305_SNP [dm3] 3R_9099583_SNP [dm6]	C	T	1.459e^-4	0.78	INTRON pum
3L	1290479	3L_1290479_SNP [dm3] 3L_1290479_SNP [dm6]	G	A	1.462e^-4	0.78	SPLICE_SITE_REGION CG32333 INTRON CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21060912	X_21060912_SNP [dm3] X_21189885_SNP [dm6]	G	A	1.472e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	1763234	X_1763234_SNP [dm3] X_1869201_SNP [dm6]	A	G	1.474e^-4	0.78	SYNONYMOUS_CODING CG14803 UPSTREAM Pex5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	6722647	3R_6722647_SNP [dm3] 3R_10896925_SNP [dm6]	T	C	1.479e^-4	0.78	DOWNSTREAM Leash EXON CR45577	TF binding site BDTNP1_TFBS_sna
2L	10295780	2L_10295780_SNP [dm3] 2L_10295780_SNP [dm6]	T	G	1.481e^-4	0.78	UPSTREAM Hand DOWNSTREAM CYLD INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
3R	23411903	3R_23411903_SNP [dm3] 3R_27586181_SNP [dm6]	T	A	1.482e^-4	0.78	UTR_3_PRIME raps DOWNSTREAM CG5639
3L	9257253	3L_9257253_SNP [dm3] 3L_9264153_SNP [dm6]	T	A	1.489e^-4	0.78	INTRON GluRIB
3L	14051950	3L_14051950_SNP [dm3] 3L_14058850_SNP [dm6]	C	G	1.489e^-4	0.78	INTRON CG32138
X	3940443	X_3940443_SNP [dm3] X_4046410_SNP [dm6]	T	A	1.495e^-4	0.78	INTERGENIC
3R	4929908	3R_4929908_SNP [dm3] 3R_9104186_SNP [dm6]	A	G	1.498e^-4	0.78	INTRON pum
3L	2984916	3L_2984916_SNP [dm3] 3L_2984916_SNP [dm6]	G	A	1.501e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4846623	2L_4846623_SNP [dm3] 2L_4846623_SNP [dm6]	T	A	1.511e^-4	0.783	UPSTREAM mxt INTRON mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7471733	3L_7471733_SNP [dm3] 3L_7478633_SNP [dm6]	T	A	1.521e^-4	0.786	INTERGENIC
2R	12059506	2R_12059506_SNP [dm3] 2R_16172001_SNP [dm6]	A	G	1.524e^-4	0.786	INTRON Ptp52F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	24885859	3R_24885859_SNP [dm3] 3R_29060137_SNP [dm6]	G	T	1.530e^-4	0.786	DOWNSTREAM Sirt7 INTRON Cul5
3R	16433515	3R_16433515_SNP [dm3] 3R_20607793_SNP [dm6]	G	T	1.543e^-4	0.791	INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12456320	X_12456320_SNP [dm3] X_12562287_SNP [dm6]	G	T	1.551e^-4	0.791	INTRON CG43921
X	17933276	X_17933276_SNP [dm3] X_18039243_SNP [dm6]	T	G	1.553e^-4	0.791	UTR_5_PRIME Sh
3L	18363343	3L_18363343_SNP [dm3] 3L_18370243_SNP [dm6]	T	C	1.565e^-4	0.796	INTERGENIC
3L	10123832	3L_10123832_DEL [dm3] 3L_10130732_DEL [dm6]	AA	A	1.580e^-4	0.8	INTRON dpr6
2R	13063560	2R_13063560_SNP [dm3] 2R_17176055_SNP [dm6]	T	C	1.584e^-4	0.8	INTERGENIC
X	5889724	X_5889724_SNP [dm3] X_5995691_SNP [dm6]	A	G	1.586e^-4	0.8	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7170424	3L_7170424_SNP [dm3] 3L_7177324_SNP [dm6]	C	T	1.595e^-4	0.8	INTRON Dscam2
X	18594617	X_18594617_SNP [dm3] X_18700584_SNP [dm6]	C	T	1.596e^-4	0.8	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4852925	2R_4852925_SNP [dm3] 2R_8965420_SNP [dm6]	C	A	1.612e^-4	0.806	NON_SYNONYMOUS_CODING CG8216
3R	26627034	3R_26627034_SNP [dm3] 3R_30801312_SNP [dm6]	G	A	1.616e^-4	0.806	INTRON wts
3L	1208588	3L_1208588_SNP [dm3] 3L_1208588_SNP [dm6]	C	T	1.626e^-4	0.809	UTR_5_PRIME mwh DOWNSTREAM LysB INTRON mwh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	8633790	3L_8633790_SNP [dm3] 3L_8640690_SNP [dm6]	C	T	1.632e^-4	0.81	NON_SYNONYMOUS_CODING Cpr66D
3R	4492568	3R_4492568_SNP [dm3] 3R_8666846_SNP [dm6]	A	G	1.638e^-4	0.81	SYNONYMOUS_CODING CG8032
2L	4738499	2L_4738499_SNP [dm3] 2L_4738499_SNP [dm6]	A	C	1.646e^-4	0.81	INTRON CG15630	TF binding site mE1_TFBS_inv
3R	21891975	3R_21891975_SNP [dm3] 3R_26066253_SNP [dm6]	T	G	1.646e^-4	0.81	INTERGENIC
2L	2497968	2L_2497968_SNP [dm3] 2L_2497968_SNP [dm6]	G	C	1.656e^-4	0.811	UTR_3_PRIME oaf DOWNSTREAM oaf
X	13805525	X_13805525_SNP [dm3] X_13911492_SNP [dm6]	C	T	1.656e^-4	0.811	INTRON mamo
X	17937277	X_17937277_SNP [dm3] X_18043244_SNP [dm6]	C	T	1.669e^-4	0.814	UPSTREAM CG15373 INTRON Sh
3L	7465764	3L_7465764_SNP [dm3] 3L_7472664_SNP [dm6]	T	C	1.675e^-4	0.814	DOWNSTREAM CG8541 INTERGENIC
2L	4738559	2L_4738559_SNP [dm3] 2L_4738559_SNP [dm6]	T	A	1.682e^-4	0.814	INTRON CG15630	TF binding site mE1_TFBS_inv
3L	10574048	3L_10574048_SNP [dm3] 3L_10580948_SNP [dm6]	A	C	1.687e^-4	0.814	INTRON A2bp1
2L	17393233	2L_17393233_SNP [dm3] 2L_17393233_SNP [dm6]	G	A	1.702e^-4	0.814	INTRON CLIP-190
2L	11024986	2L_11024986_SNP [dm3] 2L_11024986_SNP [dm6]	A	G	1.704e^-4	0.814	INTRON Samuel
X	12456327	X_12456327_SNP [dm3] X_12562294_SNP [dm6]	C	T	1.726e^-4	0.814	INTRON CG43921
3L	7460293	3L_7460293_SNP [dm3] 3L_7467193_SNP [dm6]	G	A	1.731e^-4	0.814	SPLICE_SITE_REGION Tsp66A & 2 others UPSTREAM Tsp66A INTRON Tsp66A & 2 others	TF binding site BDTNP1_TFBS_twi
X	8201781	X_8201781_SNP [dm3] X_8307748_SNP [dm6]	G	A	1.733e^-4	0.814	INTRON nAChRalpha3
3R	6519428	3R_6519428_SNP [dm3] 3R_10693706_SNP [dm6]	A	T	1.736e^-4	0.814	SYNONYMOUS_CODING Skeletor START_GAINED Skeletor UTR_5_PRIME Skeletor	TF binding site mE1_TFBS_chinmo
2L	8476602	2L_8476602_SNP [dm3] 2L_8476602_SNP [dm6]	C	T	1.739e^-4	0.814	SYNONYMOUS_CODING d UPSTREAM CheA29a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19343516	2R_19343516_SNP [dm3] 2R_23455993_SNP [dm6]	A	T	1.741e^-4	0.814	INTRON CG43795
2R	12059447	2R_12059447_SNP [dm3] 2R_16171942_SNP [dm6]	A	G	1.752e^-4	0.814	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	17934301	X_17934301_SNP [dm3] X_18040268_SNP [dm6]	C	A	1.758e^-4	0.814	UTR_5_PRIME Sh UPSTREAM Sh
3R	23414050	3R_23414050_SNP [dm3] 3R_27588328_SNP [dm6]	A	G	1.760e^-4	0.814	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7457695	3L_7457695_SNP [dm3] 3L_7464595_SNP [dm6]	A	G	1.768e^-4	0.814	UPSTREAM Tsp66A & 2 others INTERGENIC
3L	753683	3L_753683_SNP [dm3] 3L_753683_SNP [dm6]	T	C	1.778e^-4	0.814	DOWNSTREAM emc INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2917573	3R_2917573_SNP [dm3] 3R_7091851_SNP [dm6]	G	A	1.781e^-4	0.814	DOWNSTREAM CR43685 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	13805573	X_13805573_SNP [dm3] X_13911540_SNP [dm6]	T	C	1.800e^-4	0.814	INTRON mamo
3R	23517900	3R_23517900_SNP [dm3] 3R_27692178_SNP [dm6]	A	C	1.804e^-4	0.814	UTR_3_PRIME CG12880	TF binding site mE1_TFBS_chinmo
X	17934054	X_17934054_SNP [dm3] X_18040021_SNP [dm6]	G	A	1.809e^-4	0.814	UTR_5_PRIME Sh UPSTREAM Sh INTRON Sh
3L	7467605	3L_7467605_SNP [dm3] 3L_7474505_SNP [dm6]	C	T	1.811e^-4	0.814	INTERGENIC
3R	24508170	3R_24508170_SNP [dm3] 3R_28682448_SNP [dm6]	T	C	1.813e^-4	0.814	UTR_5_PRIME CG9990 INTRON CG9990	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	2983610	3L_2983610_SNP [dm3] 3L_2983610_SNP [dm6]	T	A	1.814e^-4	0.814	DOWNSTREAM CG2107 INTERGENIC
2L	5779137	2L_5779137_SNP [dm3] 2L_5779137_SNP [dm6]	G	T	1.818e^-4	0.814	INTRON CG9171
3R	6980202	3R_6980202_SNP [dm3] 3R_11154480_SNP [dm6]	T	A	1.818e^-4	0.814	UPSTREAM Ugt86Dc & 1 other INTERGENIC
2R	4825802	2R_4825802_SNP [dm3] 2R_8938297_SNP [dm6]	G	A	1.821e^-4	0.814	SYNONYMOUS_CODING FANCI
X	11656047	X_11656047_SNP [dm3] X_11762014_SNP [dm6]	C	G	1.822e^-4	0.814	INTRON m
3R	18205505	3R_18205505_SNP [dm3] 3R_22379783_SNP [dm6]	T	A	1.823e^-4	0.814	SYNONYMOUS_CODING CG18596 UPSTREAM CG34149	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1459610	2L_1459610_SNP [dm3] 2L_1459610_SNP [dm6]	G	A	1.828e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	2984948	3L_2984948_SNP [dm3] 3L_2984948_SNP [dm6]	T	C	1.831e^-4	0.814	INTERGENIC
X	21061779	X_21061779_SNP [dm3] X_21190752_SNP [dm6]	A	T	1.835e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5090933	2L_5090933_SNP [dm3] 2L_5090933_SNP [dm6]	G	A	1.836e^-4	0.814	INTRON pgant5
3R	4496927	3R_4496927_SNP [dm3] 3R_8671205_SNP [dm6]	C	G	1.836e^-4	0.814	INTRON CG8036	TF binding site BDTNP1_TFBS_dl
3R	27095112	3R_27095112_SNP [dm3] 3R_31269390_SNP [dm6]	G	A	1.852e^-4	0.814	DOWNSTREAM ppk24 INTERGENIC
X	17934295	X_17934295_SNP [dm3] X_18040262_SNP [dm6]	A	C	1.853e^-4	0.814	UTR_5_PRIME Sh UPSTREAM Sh
2R	15078429	2R_15078429_SNP [dm3] 2R_19190924_SNP [dm6]	A	T	1.861e^-4	0.814	INTRON hppy
3R	20922671	3R_20922671_SNP [dm3] 3R_25096949_SNP [dm6]	T	C	1.861e^-4	0.814	UPSTREAM CG33095 & 1 other DOWNSTREAM fd96Cb INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16966017	3R_16966017_SNP [dm3] 3R_21140295_SNP [dm6]	C	T	1.869e^-4	0.814	UTR_3_PRIME meigo UPSTREAM SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D
2R	7058003	2R_7058003_SNP [dm3] 2R_11170498_SNP [dm6]	C	T	1.873e^-4	0.814	INTRON shn & 1 other
2L	11136091	2L_11136091_SNP [dm3] 2L_11136091_SNP [dm6]	T	G	1.876e^-4	0.814	UPSTREAM hgo DOWNSTREAM CG4751 INTERGENIC
3R	12169712	3R_12169712_SNP [dm3] 3R_16343990_SNP [dm6]	A	G	1.881e^-4	0.814	NON_SYNONYMOUS_CODING pad	TF binding site mE1_TFBS_HSA
3R	24009799	3R_24009799_SNP [dm3] 3R_28184077_SNP [dm6]	G	A	1.887e^-4	0.814	INTRON CG34354
3L	738951	3L_738951_SNP [dm3] 3L_738951_SNP [dm6]	C	T	1.891e^-4	0.814	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	14204016	2L_14204016_DEL [dm3] 2L_14204016_DEL [dm6]	AAACCAA	A	1.895e^-4	0.814	INTRON Dyrk2
2R	4824563	2R_4824563_SNP [dm3] 2R_8937058_SNP [dm6]	G	A	1.898e^-4	0.814	SYNONYMOUS_CODING FANCI	TF binding site mE1_TFBS_sens
3L	556211	3L_556211_SNP [dm3] 3L_556211_SNP [dm6]	T	C	1.901e^-4	0.814	INTRON hipk	TF binding site mE1_TFBS_inv
3R	12167906	3R_12167906_SNP [dm3] 3R_16342184_SNP [dm6]	T	A	1.911e^-4	0.814	UPSTREAM pad & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	2170724	3L_2170724_SNP [dm3] 3L_2170724_SNP [dm6]	T	G	1.924e^-4	0.814	DOWNSTREAM CR15821 INTRON CG5704
3L	1213608	3L_1213608_SNP [dm3] 3L_1213608_SNP [dm6]	G	A	1.933e^-4	0.814	DOWNSTREAM LysE INTRON mwh
2R	16965139	2R_16965139_SNP [dm3] 2R_21077634_SNP [dm6]	T	C	1.937e^-4	0.814	INTRON Treh
3L	6699675	3L_6699675_SNP [dm3] 3L_6706575_SNP [dm6]	G	T	1.938e^-4	0.814	INTRON CG8519
2R	9747066	2R_9747066_SNP [dm3] 2R_13859561_SNP [dm6]	G	C	1.938e^-4	0.814	SYNONYMOUS_CODING Uba3 UPSTREAM tum DOWNSTREAM CG16935	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4737015	2L_4737015_SNP [dm3] 2L_4737015_SNP [dm6]	G	T	1.940e^-4	0.814	INTRON CG15630	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	2170754	3L_2170754_SNP [dm3] 3L_2170754_SNP [dm6]	C	A	1.941e^-4	0.814	DOWNSTREAM CR15821 INTRON CG5704
3R	4422107	3R_4422107_SNP [dm3] 3R_8596385_SNP [dm6]	C	T	1.941e^-4	0.814	INTRON 5-HT2B
3L	1210290	3L_1210290_INS [dm3] 3L_1210290_INS [dm6]	T	TTCTT	1.951e^-4	0.814	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
3R	6977520	3R_6977520_SNP [dm3] 3R_11151798_SNP [dm6]	T	C	1.954e^-4	0.814	UTR_3_PRIME Ugt86Di DOWNSTREAM Ugt86Di
3L	2367491	3L_2367491_SNP [dm3] 3L_2367491_SNP [dm6]	T	A	1.959e^-4	0.814	DOWNSTREAM CG1317 INTERGENIC
X	17930227	X_17930227_SNP [dm3] X_18036194_SNP [dm6]	T	C	1.970e^-4	0.814	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12350055	3L_12350055_SNP [dm3] 3L_12356955_SNP [dm6]	T	G	1.970e^-4	0.814	INTERGENIC
2L	16454065	2L_16454065_SNP [dm3] 2L_16454065_SNP [dm6]	T	C	1.972e^-4	0.814	UTR_3_PRIME Idgf3	regulatory region REDfly_CRMs
3L	10192163	3L_10192163_SNP [dm3] 3L_10199063_SNP [dm6]	T	A	1.972e^-4	0.814	INTRON ect
X	17941459	X_17941459_SNP [dm3] X_18047426_SNP [dm6]	T	C	1.985e^-4	0.814	SYNONYMOUS_CODING CG15373 INTRON Sh	TF binding site mE1_TFBS_chinmo
3L	22384483	3L_22384483_SNP [dm3] 3L_22391383_SNP [dm6]	C	T	1.996e^-4	0.814	INTRON Ten-m
3R	21471547	3R_21471547_SNP [dm3] 3R_25645825_SNP [dm6]	T	A	1.999e^-4	0.814	UPSTREAM mir-92a INTRON jigr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1210288	3L_1210288_SNP [dm3] 3L_1210288_SNP [dm6]	T	A	1.999e^-4	0.814	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
3L	7473829	3L_7473829_SNP [dm3] 3L_7480729_SNP [dm6]	C	G	2.005e^-4	0.814	INTERGENIC	TF binding site mE1_TFBS_inv
3R	23036817	3R_23036817_SNP [dm3] 3R_27211095_SNP [dm6]	T	C	2.012e^-4	0.814	INTERGENIC
X	17937422	X_17937422_SNP [dm3] X_18043389_SNP [dm6]	C	G	2.015e^-4	0.814	UPSTREAM CG15373 INTRON Sh
3L	4021583	3L_4021583_SNP [dm3] 3L_4021583_SNP [dm6]	C	T	2.016e^-4	0.814	NON_SYNONYMOUS_CODING Mul1 DOWNSTREAM fd64A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7612035	3L_7612035_SNP [dm3] 3L_7618935_SNP [dm6]	A	T	2.030e^-4	0.814	INTRON CG33275
3L	12308512	3L_12308512_DEL [dm3] 3L_12315412_DEL [dm6]	TGCT	T	2.035e^-4	0.814	INTERGENIC
X	12456333	X_12456333_SNP [dm3] X_12562300_SNP [dm6]	C	T	2.042e^-4	0.814	INTRON CG43921
X	12456336	X_12456336_SNP [dm3] X_12562303_SNP [dm6]	A	T	2.042e^-4	0.814	INTRON CG43921
3L	23052918	3L_23052918_SNP [dm3] 3L_23059818_SNP [dm6]	T	A	2.046e^-4	0.814	INTERGENIC	transposable element FlyBase
X	7737661	X_7737661_SNP [dm3] X_7843628_SNP [dm6]	G	A	2.048e^-4	0.814	DOWNSTREAM CG1402 INTERGENIC
X	5370563	X_5370563_DEL [dm3] X_5476530_DEL [dm6]	TTCT	C	2.051e^-4	0.814	INTRON SPR
X	5370570	X_5370570_DEL [dm3] X_5476537_DEL [dm6]	ACTTCTCTGC	G	2.051e^-4	0.814	INTRON SPR
X	17941415	X_17941415_SNP [dm3] X_18047382_SNP [dm6]	T	A	2.061e^-4	0.814	NON_SYNONYMOUS_CODING CG15373 INTRON Sh	TF binding site mE1_TFBS_chinmo
3R	18205318	3R_18205318_SNP [dm3] 3R_22379596_SNP [dm6]	T	A	2.062e^-4	0.814	SYNONYMOUS_CODING CG18596 UPSTREAM CG34149
3R	17264926	3R_17264926_SNP [dm3] 3R_21439204_SNP [dm6]	G	A	2.069e^-4	0.814	INTERGENIC
X	21062647	X_21062647_SNP [dm3] X_21191620_SNP [dm6]	T	G	2.073e^-4	0.814	INTERGENIC	transposable element FlyBase
3L	1518394	3L_1518394_SNP [dm3] 3L_1518394_SNP [dm6]	C	T	2.076e^-4	0.814	SYNONYMOUS_CODING Psa UTR_5_PRIME Psa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	14700701	2L_14700701_SNP [dm3] 2L_14700701_SNP [dm6]	G	T	2.081e^-4	0.814	INTERGENIC
2R	10720888	2R_10720888_SNP [dm3] 2R_14833383_SNP [dm6]	T	C	2.085e^-4	0.814	NON_SYNONYMOUS_CODING CG10205
3R	13799601	3R_13799601_SNP [dm3] 3R_17973879_SNP [dm6]	T	C	2.086e^-4	0.814	INTRON cpo
X	17933073	X_17933073_SNP [dm3] X_18039040_SNP [dm6]	G	A	2.090e^-4	0.814	INTRON Sh
2R	11343159	2R_11343159_SNP [dm3] 2R_15455654_SNP [dm6]	C	T	2.091e^-4	0.814	INTRON CG43729
3R	24212185	3R_24212185_SNP [dm3] 3R_28386463_SNP [dm6]	C	A	2.100e^-4	0.814	INTERGENIC
3R	20922675	3R_20922675_SNP [dm3] 3R_25096953_SNP [dm6]	A	T	2.103e^-4	0.814	UPSTREAM CG33095 & 1 other DOWNSTREAM fd96Cb INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14590500	X_14590500_SNP [dm3] X_14696467_SNP [dm6]	A	T	2.105e^-4	0.814	INTRON NetB
3L	18363351	3L_18363351_SNP [dm3] 3L_18370251_SNP [dm6]	A	C	2.107e^-4	0.814	INTERGENIC
X	9986149	X_9986149_SNP [dm3] X_10092116_SNP [dm6]	C	T	2.108e^-4	0.814	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21589472	3R_21589472_SNP [dm3] 3R_25763750_SNP [dm6]	A	G	2.113e^-4	0.814	UPSTREAM LpR1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13571971	X_13571971_SNP [dm3] X_13677938_SNP [dm6]	T	A	2.116e^-4	0.814	UTR_3_PRIME CG12177 DOWNSTREAM CG12177 & 1 other
3R	21594916	3R_21594916_SNP [dm3] 3R_25769194_SNP [dm6]	A	G	2.128e^-4	0.814	INTERGENIC
3R	24009850	3R_24009850_SNP [dm3] 3R_28184128_SNP [dm6]	G	A	2.133e^-4	0.814	INTRON CG34354
3R	27121803	3R_27121803_SNP [dm3] 3R_31296081_SNP [dm6]	C	T	2.145e^-4	0.814	INTERGENIC
X	21062392	X_21062392_SNP [dm3] X_21191365_SNP [dm6]	T	C	2.151e^-4	0.814	INTERGENIC	transposable element FlyBase
3L	8971866	3L_8971866_SNP [dm3] 3L_8978766_SNP [dm6]	A	G	2.152e^-4	0.814	INTRON CG5644	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7090861	3L_7090861_SNP [dm3] 3L_7097761_SNP [dm6]	A	C	2.161e^-4	0.814	INTRON form3
2L	11300622	2L_11300622_SNP [dm3] 2L_11300622_SNP [dm6]	G	A	2.164e^-4	0.814	INTERGENIC
3L	7201145	3L_7201145_SNP [dm3] 3L_7208045_SNP [dm6]	G	A	2.165e^-4	0.814	INTERGENIC
X	12325067	X_12325067_SNP [dm3] X_12431034_SNP [dm6]	G	A	2.167e^-4	0.814	INTERGENIC
3L	3389804	3L_3389804_SNP [dm3] 3L_3389804_SNP [dm6]	G	C	2.171e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21062658	2L_21062658_SNP [dm3] 2L_21062658_SNP [dm6]	C	T	2.174e^-4	0.814	INTRON CG9265
3L	582018	3L_582018_SNP [dm3] 3L_582018_SNP [dm6]	C	G	2.188e^-4	0.814	SYNONYMOUS_CODING Ppm1 DOWNSTREAM hipk & 1 other
3R	18205960	3R_18205960_SNP [dm3] 3R_22380238_SNP [dm6]	C	A	2.191e^-4	0.814	DOWNSTREAM CG18596 INTRON CG34149	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
2R	4850168	2R_4850168_SNP [dm3] 2R_8962663_SNP [dm6]	A	G	2.194e^-4	0.814	UTR_3_PRIME babo DOWNSTREAM CG8216
2L	5400583	2L_5400583_SNP [dm3] 2L_5400583_SNP [dm6]	T	C	2.206e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1754720	3L_1754720_SNP [dm3] 3L_1754720_SNP [dm6]	A	T	2.208e^-4	0.814	UTR_5_PRIME Cht2 INTRON Cht2
3R	4444444	3R_4444444_SNP [dm3] 3R_8618722_SNP [dm6]	T	A	2.218e^-4	0.814	INTRON 5-HT2B
X	17931753	X_17931753_SNP [dm3] X_18037720_SNP [dm6]	C	T	2.230e^-4	0.814	INTRON Sh
2R	9747186	2R_9747186_SNP [dm3] 2R_13859681_SNP [dm6]	T	C	2.234e^-4	0.814	SYNONYMOUS_CODING Uba3 UPSTREAM tum DOWNSTREAM CG16935	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14394968	3R_14394968_SNP [dm3] 3R_18569246_SNP [dm6]	A	T	2.240e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	16511916	3L_16511916_SNP [dm3] 3L_16518816_SNP [dm6]	G	T	2.241e^-4	0.814	INTRON CG43373
2L	2191712	2L_2191712_SNP [dm3] 2L_2191712_SNP [dm6]	A	G	2.249e^-4	0.814	DOWNSTREAM CR44065 & 1 other INTRON CG10874	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	8847803	2L_8847803_SNP [dm3] 2L_8847803_SNP [dm6]	T	G	2.251e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9075534	X_9075534_SNP [dm3] X_9181501_SNP [dm6]	A	G	2.255e^-4	0.814	UTR_3_PRIME mei-P26
3L	16462699	3L_16462699_SNP [dm3] 3L_16469599_SNP [dm6]	T	C	2.260e^-4	0.814	DOWNSTREAM aos INTRON CG33158
2R	4829306	2R_4829306_SNP [dm3] 2R_8941801_SNP [dm6]	G	A	2.268e^-4	0.814	DOWNSTREAM CG13748 EXON CR44273
3L	1290509	3L_1290509_SNP [dm3] 3L_1290509_SNP [dm6]	G	C	2.273e^-4	0.814	INTRON CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4839090	2R_4839090_SNP [dm3] 2R_8951585_SNP [dm6]	G	C	2.276e^-4	0.814	UPSTREAM Tom7 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	21060784	X_21060784_SNP [dm3] X_21189757_SNP [dm6]	A	C	2.276e^-4	0.814	DOWNSTREAM CR45506 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	24899265	3R_24899265_SNP [dm3] 3R_29073543_SNP [dm6]	A	G	2.280e^-4	0.814	INTRON CG11873	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5794518	3L_5794518_SNP [dm3] 3L_5801418_SNP [dm6]	C	T	2.285e^-4	0.814	INTRON S6k	TF binding site mE1_TFBS_cad
3R	26372320	3R_26372320_SNP [dm3] 3R_30546598_SNP [dm6]	G	A	2.285e^-4	0.814	UPSTREAM tmod INTRON tmod
3R	17265154	3R_17265154_SNP [dm3] 3R_21439432_SNP [dm6]	C	G	2.286e^-4	0.814	INTERGENIC
3L	1753611	3L_1753611_SNP [dm3] 3L_1753611_SNP [dm6]	T	A	2.298e^-4	0.814	NON_SYNONYMOUS_CODING Cht2	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	11231468	X_11231468_SNP [dm3] X_11337435_SNP [dm6]	C	T	2.303e^-4	0.814	SYNONYMOUS_CODING Kap3
X	17932029	X_17932029_SNP [dm3] X_18037996_SNP [dm6]	C	G	2.307e^-4	0.814	INTRON Sh
X	17933490	X_17933490_SNP [dm3] X_18039457_SNP [dm6]	C	T	2.309e^-4	0.814	UTR_5_PRIME Sh
3R	13655284	3R_13655284_SNP [dm3] 3R_17829562_SNP [dm6]	A	G	2.310e^-4	0.814	INTRON tinc
3L	1654181	3L_1654181_SNP [dm3] 3L_1654181_SNP [dm6]	G	A	2.310e^-4	0.814	DOWNSTREAM CG7971 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	3808695	2R_3808695_SNP [dm3] 2R_7921190_SNP [dm6]	G	A	2.317e^-4	0.814	SYNONYMOUS_CODING Or43b UTR_3_PRIME Cul1 DOWNSTREAM Cul1
3L	7120234	3L_7120234_SNP [dm3] 3L_7127134_SNP [dm6]	C	T	2.317e^-4	0.814	SYNONYMOUS_CODING BBS1 DOWNSTREAM CG8629	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4478482	3R_4478482_SNP [dm3] 3R_8652760_SNP [dm6]	C	T	2.324e^-4	0.814	NON_SYNONYMOUS_CODING Dhod UPSTREAM CG11753	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	8848016	2L_8848016_SNP [dm3] 2L_8848016_SNP [dm6]	T	G	2.326e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2495211	3L_2495211_SNP [dm3] 3L_2495211_SNP [dm6]	C	T	2.326e^-4	0.814	SPLICE_SITE_REGION CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11053052	2L_11053052_SNP [dm3] 2L_11053052_SNP [dm6]	A	G	2.328e^-4	0.814	INTRON Samuel
3R	6981240	3R_6981240_SNP [dm3] 3R_11155518_SNP [dm6]	T	A	2.329e^-4	0.814	NON_SYNONYMOUS_CODING Ugt86Dc
3L	6996498	3L_6996498_SNP [dm3] 3L_7003398_SNP [dm6]	A	T	2.334e^-4	0.814	INTRON Mp
X	4405569	X_4405569_SNP [dm3] X_4511536_SNP [dm6]	G	A	2.334e^-4	0.814	INTRON CR32773	silencer mE1_HDAC_PRE
X	11877808	X_11877808_SNP [dm3] X_11983775_SNP [dm6]	C	A	2.337e^-4	0.814	INTRON cac
2R	10626647	2R_10626647_SNP [dm3] 2R_14739142_SNP [dm6]	G	A	2.337e^-4	0.814	DOWNSTREAM CG12858 EXON CR43428
3R	23057760	3R_23057760_SNP [dm3] 3R_27232038_SNP [dm6]	T	A	2.343e^-4	0.814	SYNONYMOUS_CODING CG31064 INTRON CG31064
2L	8398576	2L_8398576_SNP [dm3] 2L_8398576_SNP [dm6]	C	T	2.346e^-4	0.814	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
2R	12059610	2R_12059610_SNP [dm3] 2R_16172105_SNP [dm6]	C	G	2.350e^-4	0.814	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	21106137	2L_21106137_INS [dm3] 2L_21106137_INS [dm6]	T	TGTA	2.352e^-4	0.814	DOWNSTREAM CR44056 INTRON Nhe2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_zfh1
3L	556025	3L_556025_SNP [dm3] 3L_556025_SNP [dm6]	T	G	2.361e^-4	0.814	INTRON hipk
3L	2983612	3L_2983612_SNP [dm3] 3L_2983612_SNP [dm6]	C	G	2.366e^-4	0.814	DOWNSTREAM CG2107 INTERGENIC
2L	6531738	2L_6531738_INS [dm3] 2L_6531738_INS [dm6]	T	TT	2.368e^-4	0.814	INTRON eya	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	4797013	3L_4797013_SNP [dm3] 3L_4797013_SNP [dm6]	C	A	2.369e^-4	0.814	DOWNSTREAM RhoGEF64C INTERGENIC
3L	7123357	3L_7123357_SNP [dm3] 3L_7130257_SNP [dm6]	G	A	2.371e^-4	0.814	UPSTREAM CG8628 DOWNSTREAM CG15829 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	11024921	2L_11024921_SNP [dm3] 2L_11024921_SNP [dm6]	A	T	2.373e^-4	0.814	INTRON Samuel
X	21062393	X_21062393_SNP [dm3] X_21191366_SNP [dm6]	G	T	2.384e^-4	0.814	INTERGENIC	transposable element FlyBase
X	12325043	X_12325043_SNP [dm3] X_12431010_SNP [dm6]	A	T	2.387e^-4	0.814	INTERGENIC
3R	23561112	3R_23561112_SNP [dm3] 3R_27735390_SNP [dm6]	T	C	2.390e^-4	0.814	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17625060	2R_17625060_SNP [dm3] 2R_21737555_SNP [dm6]	A	C	2.390e^-4	0.814	INTERGENIC
3L	16899892	3L_16899892_SNP [dm3] 3L_16906792_SNP [dm6]	T	C	2.392e^-4	0.814	INTRON Lmpt
2L	20148288	2L_20148288_SNP [dm3] 2L_20148288_SNP [dm6]	G	C	2.392e^-4	0.814	INTERGENIC
2R	15257394	2R_15257394_DEL [dm3] 2R_19369889_DEL [dm6]	AA	A	2.395e^-4	0.814	SPLICE_SITE_REGION CG9416 INTRON CG9416
X	12325016	X_12325016_DEL [dm3] X_12430983_DEL [dm6]	TTGTAGATGGATAGATAGAT...	T	2.397e^-4	0.814	INTERGENIC
2L	11784311	2L_11784311_SNP [dm3] 2L_11784311_SNP [dm6]	G	A	2.402e^-4	0.814	INTERGENIC
3L	7450838	3L_7450838_SNP [dm3] 3L_7457738_SNP [dm6]	G	A	2.406e^-4	0.814	SYNONYMOUS_CODING ppk26
X	10960396	X_10960396_SNP [dm3] X_11066363_SNP [dm6]	C	A	2.406e^-4	0.814	UPSTREAM CG15203 EXON CR45614
2R	9680133	2R_9680133_SNP [dm3] 2R_13792628_SNP [dm6]	C	G	2.408e^-4	0.814	DOWNSTREAM CR43811 INTERGENIC
2L	4188412	2L_4188412_SNP [dm3] 2L_4188412_SNP [dm6]	G	A	2.418e^-4	0.814	NON_SYNONYMOUS_CODING lectin-24Db UPSTREAM CG31961 DOWNSTREAM CG3714
X	1833076	X_1833076_SNP [dm3] X_1939043_SNP [dm6]	A	G	2.419e^-4	0.814	SYNONYMOUS_CODING CG3857	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1205051	3L_1205051_SNP [dm3] 3L_1205051_SNP [dm6]	G	T	2.422e^-4	0.814	UPSTREAM CG9119 INTRON mwh	TF binding site mE1_TFBS_cad
2L	8024923	2L_8024923_SNP [dm3] 2L_8024923_SNP [dm6]	G	A	2.423e^-4	0.814	SYNONYMOUS_CODING Tg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10500663	2L_10500663_SNP [dm3] 2L_10500663_SNP [dm6]	C	T	2.426e^-4	0.814	INTRON Myo31DF
3L	16402400	3L_16402400_INS [dm3] 3L_16409300_INS [dm6]	G	GCTGCTG	2.427e^-4	0.814	UPSTREAM fax INTRON fax	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6725521	3L_6725521_SNP [dm3] 3L_6732421_SNP [dm6]	T	A	2.428e^-4	0.814	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	5665059	2L_5665059_SNP [dm3] 2L_5665059_SNP [dm6]	A	G	2.428e^-4	0.814	INTRON Hsp60C
3R	17185020	3R_17185020_SNP [dm3] 3R_21359298_SNP [dm6]	C	T	2.433e^-4	0.814	UTR_5_PRIME pre-mod_mdg4_-L & 1 other UPSTREAM pre-mod_mdg4_-Z & 1 other INTRON mod_mdg4_ & 4 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	19331718	2L_19331718_DEL [dm3] 2L_19331718_DEL [dm6]	ATGGTGGAAGATTGAGAGGG...	A	2.439e^-4	0.814	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	16998913	3L_16998913_SNP [dm3] 3L_17005813_SNP [dm6]	C	G	2.441e^-4	0.814	INTRON CG3764
3L	7159058	3L_7159058_SNP [dm3] 3L_7165958_SNP [dm6]	G	T	2.446e^-4	0.814	SYNONYMOUS_CODING Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20373574	3R_20373574_SNP [dm3] 3R_24547852_SNP [dm6]	T	G	2.449e^-4	0.814	INTRON Esyt2	TF binding site mE1_TFBS_bab1
2L	6978696	2L_6978696_SNP [dm3] 2L_6978696_SNP [dm6]	A	G	2.451e^-4	0.814	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13550202	2R_13550202_SNP [dm3] 2R_17662697_SNP [dm6]	C	T	2.463e^-4	0.816	INTRON CCHa1-R
3L	7467473	3L_7467473_DEL [dm3] 3L_7474373_DEL [dm6]	CTGTGAC	C	2.495e^-4	0.824	INTERGENIC
2L	677337	2L_677337_SNP [dm3] 2L_677337_SNP [dm6]	A	C	2.498e^-4	0.824	INTRON ds
X	1748448	X_1748448_SNP [dm3] X_1854415_SNP [dm6]	T	C	2.519e^-4	0.824	DOWNSTREAM CG42666 INTERGENIC	TF binding site mE1_TFBS_sens
2R	12570257	2R_12570257_SNP [dm3] 2R_16682752_SNP [dm6]	G	A	2.522e^-4	0.824	INTRON CG30463
3L	567634	3L_567634_SNP [dm3] 3L_567634_SNP [dm6]	T	C	2.525e^-4	0.824	INTRON hipk
3R	10582545	3R_10582545_SNP [dm3] 3R_14756823_SNP [dm6]	G	A	2.528e^-4	0.824	INTRON jvl
2L	5864660	2L_5864660_SNP [dm3] 2L_5864660_SNP [dm6]	C	T	2.540e^-4	0.824	INTRON rau	TF binding site BDTNP1_TFBS_twi
2L	4103198	2L_4103198_SNP [dm3] 2L_4103198_SNP [dm6]	C	T	2.547e^-4	0.824	INTRON ed
3L	4260390	3L_4260390_SNP [dm3] 3L_4260390_SNP [dm6]	C	G	2.551e^-4	0.824	SYNONYMOUS_CODING CG1309 DOWNSTREAM CG11586	TF binding site mE1_TFBS_sens
3R	24013631	3R_24013631_SNP [dm3] 3R_28187909_SNP [dm6]	G	A	2.555e^-4	0.824	INTRON CG34354	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6981224	3R_6981224_SNP [dm3] 3R_11155502_SNP [dm6]	C	T	2.557e^-4	0.824	SYNONYMOUS_CODING Ugt86Dc
3R	16433593	3R_16433593_SNP [dm3] 3R_20607871_SNP [dm6]	G	A	2.562e^-4	0.824	INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24012620	3R_24012620_SNP [dm3] 3R_28186898_SNP [dm6]	G	A	2.563e^-4	0.824	INTRON CG34354
3L	7349119	3L_7349119_SNP [dm3] 3L_7356019_SNP [dm6]	G	A	2.563e^-4	0.824	INTRON CTCF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	5471860	2L_5471860_SNP [dm3] 2L_5471860_SNP [dm6]	A	T	2.565e^-4	0.824	INTERGENIC
3L	9257381	3L_9257381_SNP [dm3] 3L_9264281_SNP [dm6]	G	T	2.565e^-4	0.824	INTRON GluRIB
3L	1538905	3L_1538905_SNP [dm3] 3L_1538905_SNP [dm6]	A	G	2.579e^-4	0.824	SYNONYMOUS_CODING CG7852	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5669993	2R_5669993_SNP [dm3] 2R_9782488_SNP [dm6]	A	G	2.583e^-4	0.824	INTRON CG1688
3R	4523758	3R_4523758_SNP [dm3] 3R_8698036_SNP [dm6]	G	A	2.587e^-4	0.824	UPSTREAM hb INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26627197	3R_26627197_SNP [dm3] 3R_30801475_SNP [dm6]	A	G	2.600e^-4	0.824	INTRON wts
3R	21759393	3R_21759393_SNP [dm3] 3R_25933671_SNP [dm6]	G	T	2.602e^-4	0.824	INTRON CCAP-R
2R	17674966	2R_17674966_SNP [dm3] 2R_21787461_SNP [dm6]	A	T	2.610e^-4	0.824	INTERGENIC
3L	544402	3L_544402_SNP [dm3] 3L_544402_SNP [dm6]	T	G	2.619e^-4	0.824	INTRON hipk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	12353356	3R_12353356_SNP [dm3] 3R_16527634_SNP [dm6]	T	G	2.631e^-4	0.824	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17514913	2R_17514913_SNP [dm3] 2R_21627408_SNP [dm6]	A	G	2.634e^-4	0.824	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5429988	3L_5429988_SNP [dm3] 3L_5436888_SNP [dm6]	T	C	2.637e^-4	0.824	INTRON CG34391
X	1847699	X_1847699_SNP [dm3] X_1953666_SNP [dm6]	T	C	2.638e^-4	0.824	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	15758386	2L_15758386_SNP [dm3] 2L_15758386_SNP [dm6]	C	T	2.642e^-4	0.824	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4457005	2L_4457005_INS [dm3] 2L_4457005_INS [dm6]	C	CATTT	2.655e^-4	0.824	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	7476402	3L_7476402_DEL [dm3] 3L_7483302_DEL [dm6]	AAA	A	2.656e^-4	0.824	INTERGENIC
3L	3115294	3L_3115294_SNP [dm3] 3L_3115294_SNP [dm6]	T	A	2.670e^-4	0.824	UTR_3_PRIME prominin-like DOWNSTREAM prominin-like
2L	14527623	2L_14527623_SNP [dm3] 2L_14527623_SNP [dm6]	G	A	2.677e^-4	0.824	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	1752406	X_1752406_SNP [dm3] X_1858373_SNP [dm6]	T	C	2.678e^-4	0.824	SYNONYMOUS_CODING CG14812 DOWNSTREAM deltaCOP	TF binding site mE1_TFBS_sens
X	18964807	X_18964807_SNP [dm3] X_19070774_SNP [dm6]	T	C	2.680e^-4	0.824	INTERGENIC
3R	22747660	3R_22747660_SNP [dm3] 3R_26921938_SNP [dm6]	G	C	2.690e^-4	0.824	INTRON sda
3L	1654265	3L_1654265_DEL [dm3] 3L_1654265_DEL [dm6]	TCT	T	2.691e^-4	0.824	UTR_3_PRIME CG7971 DOWNSTREAM CG7971 & 1 other
3R	14035077	3R_14035077_DEL [dm3] 3R_18209355_DEL [dm6]	ATGGCCTCGCCGGCAA...	A	2.695e^-4	0.824	DOWNSTREAM CG44158 INTRON CG7985
2L	2506705	2L_2506705_SNP [dm3] 2L_2506705_SNP [dm6]	A	C	2.702e^-4	0.824	DOWNSTREAM CR44607 INTERGENIC
2L	21938912	2L_21938912_SNP [dm3] 2L_21938912_SNP [dm6]	G	T	2.703e^-4	0.824	INTERGENIC
3L	2384366	3L_2384366_SNP [dm3] 3L_2384366_SNP [dm6]	A	G	2.703e^-4	0.824	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA
X	17939453	X_17939453_SNP [dm3] X_18045420_SNP [dm6]	A	G	2.704e^-4	0.824	INTRON Sh & 1 other
3L	10123801	3L_10123801_SNP [dm3] 3L_10130701_SNP [dm6]	T	A	2.730e^-4	0.824	INTRON dpr6
2L	3692175	2L_3692175_SNP [dm3] 2L_3692175_SNP [dm6]	C	T	2.731e^-4	0.824	UTR_3_PRIME CG16704 DOWNSTREAM CG3513 & 1 other
3R	23801581	3R_23801581_SNP [dm3] 3R_27975859_SNP [dm6]	T	C	2.737e^-4	0.824	INTRON betaTub97EF
2L	11024979	2L_11024979_SNP [dm3] 2L_11024979_SNP [dm6]	A	T	2.749e^-4	0.824	INTRON Samuel
3R	21594709	3R_21594709_SNP [dm3] 3R_25768987_SNP [dm6]	A	T	2.752e^-4	0.824	INTERGENIC
3R	20267837	3R_20267837_SNP [dm3] 3R_24442115_SNP [dm6]	G	A	2.760e^-4	0.824	INTRON nAChRalpha1
3R	24490259	3R_24490259_SNP [dm3] 3R_28664537_SNP [dm6]	T	A	2.762e^-4	0.824	INTERGENIC
2L	3969193	2L_3969193_SNP [dm3] 2L_3969193_SNP [dm6]	G	A	2.763e^-4	0.824	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	4738639	2L_4738639_SNP [dm3] 2L_4738639_SNP [dm6]	A	T	2.764e^-4	0.824	INTRON CG15630	TF binding site mE1_TFBS_inv
2R	13615812	2R_13615812_SNP [dm3] 2R_17728307_SNP [dm6]	T	C	2.776e^-4	0.824	STOP_LOST CG4975 UTR_5_PRIME CG4984 UPSTREAM CG4984
X	17932992	X_17932992_SNP [dm3] X_18038959_SNP [dm6]	G	A	2.790e^-4	0.824	INTRON Sh
X	17941595	X_17941595_SNP [dm3] X_18047562_SNP [dm6]	G	T	2.804e^-4	0.824	INTRON Sh & 1 other	TF binding site mE1_TFBS_chinmo
3L	7597650	3L_7597650_SNP [dm3] 3L_7604550_SNP [dm6]	T	G	2.808e^-4	0.824	UPSTREAM CG33275 INTRON CG33275
2L	1636643	2L_1636643_SNP [dm3] 2L_1636643_SNP [dm6]	C	A	2.814e^-4	0.824	INTERGENIC
3L	7126928	3L_7126928_SNP [dm3] 3L_7133828_SNP [dm6]	T	G	2.817e^-4	0.824	UPSTREAM melt DOWNSTREAM Dbi INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17937276	X_17937276_SNP [dm3] X_18043243_SNP [dm6]	A	T	2.821e^-4	0.824	UPSTREAM CG15373 INTRON Sh
3L	15664459	3L_15664459_SNP [dm3] 3L_15671359_SNP [dm6]	T	G	2.832e^-4	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	2493307	2L_2493307_SNP [dm3] 2L_2493307_SNP [dm6]	G	A	2.835e^-4	0.824	UPSTREAM Slh INTRON oaf	enhancer FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	1763183	X_1763183_SNP [dm3] X_1869150_SNP [dm6]	G	A	2.839e^-4	0.824	SYNONYMOUS_CODING CG14803 UPSTREAM Pex5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	13500120	X_13500120_DEL [dm3] X_13606087_DEL [dm6]	TCGATAATGCCGT...	T	2.840e^-4	0.824	UTR_5_PRIME CG11178 UPSTREAM CG11178 DOWNSTREAM CR44654	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2R	13634262	2R_13634262_SNP [dm3] 2R_17746757_SNP [dm6]	G	C	2.841e^-4	0.824	SYNONYMOUS_CODING sub DOWNSTREAM Ir54a
2L	1636634	2L_1636634_DEL [dm3] 2L_1636634_DEL [dm6]	AA	A	2.852e^-4	0.824	INTERGENIC
2L	4736937	2L_4736937_SNP [dm3] 2L_4736937_SNP [dm6]	T	A	2.869e^-4	0.824	INTRON CG15630
3L	8628089	3L_8628089_SNP [dm3] 3L_8634989_SNP [dm6]	C	T	2.883e^-4	0.824	UPSTREAM Cdc6 INTRON Zasp66
3L	1219124	3L_1219124_SNP [dm3] 3L_1219124_SNP [dm6]	G	C	2.883e^-4	0.824	UPSTREAM LysP INTRON mwh
3R	20722633	3R_20722633_SNP [dm3] 3R_24896911_SNP [dm6]	A	G	2.897e^-4	0.824	DOWNSTREAM CG13643 INTRON CG11069
3L	22408131	3L_22408131_SNP [dm3] 3L_22415031_SNP [dm6]	G	T	2.900e^-4	0.824	INTERGENIC
3R	12335110	3R_12335110_SNP [dm3] 3R_16509388_SNP [dm6]	A	T	2.900e^-4	0.824	INTRON CG42342	TF binding site BDTNP1_TFBS_twi
2R	4841849	2R_4841849_SNP [dm3] 2R_8954344_SNP [dm6]	C	A	2.914e^-4	0.824	INTRON babo
2R	15532126	2R_15532126_SNP [dm3] 2R_19644621_SNP [dm6]	C	G	2.924e^-4	0.824	DOWNSTREAM CG15124 INTERGENIC
2L	3872095	2L_3872095_SNP [dm3] 2L_3872095_SNP [dm6]	A	G	2.927e^-4	0.824	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1784024	3L_1784024_SNP [dm3] 3L_1784024_SNP [dm6]	A	C	2.932e^-4	0.824	INTRON alpha-Spec
2L	5533538	2L_5533538_SNP [dm3] 2L_5533538_SNP [dm6]	G	A	2.937e^-4	0.824	INTRON Cap-D3	TF binding site mE1_TFBS_HSA
2L	14344974	2L_14344974_SNP [dm3] 2L_14344974_SNP [dm6]	G	A	2.939e^-4	0.824	SYNONYMOUS_CODING CG33090 DOWNSTREAM Send2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17937314	X_17937314_SNP [dm3] X_18043281_SNP [dm6]	T	C	2.950e^-4	0.824	UPSTREAM CG15373 INTRON Sh
2L	11499178	2L_11499178_SNP [dm3] 2L_11499178_SNP [dm6]	A	G	2.953e^-4	0.824	UPSTREAM CG6488 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	16433509	3R_16433509_SNP [dm3] 3R_20607787_SNP [dm6]	A	G	2.953e^-4	0.824	INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17941647	X_17941647_SNP [dm3] X_18047614_SNP [dm6]	G	T	2.955e^-4	0.824	INTRON Sh & 1 other	TF binding site mE1_TFBS_chinmo
2L	10155714	2L_10155714_SNP [dm3] 2L_10155714_SNP [dm6]	T	A	2.955e^-4	0.824	UTR_3_PRIME CG4839 DOWNSTREAM CG4839 INTRON CG44153
3R	20259737	3R_20259737_SNP [dm3] 3R_24434015_SNP [dm6]	G	A	2.957e^-4	0.824	INTRON nAChRalpha1
2L	6292026	2L_6292026_SNP [dm3] 2L_6292026_SNP [dm6]	C	A	2.958e^-4	0.824	DOWNSTREAM Ddr INTRON Ddr	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	11960538	3L_11960538_SNP [dm3] 3L_11967438_SNP [dm6]	A	T	2.962e^-4	0.824	UTR_3_PRIME Muc68E
3R	13462306	3R_13462306_SNP [dm3] 3R_17636584_SNP [dm6]	C	T	2.962e^-4	0.824	INTRON CG43175
3L	1741107	3L_1741107_SNP [dm3] 3L_1741107_SNP [dm6]	A	C	2.968e^-4	0.824	UPSTREAM Gk INTRON Gk
2R	10302024	2R_10302024_SNP [dm3] 2R_14414519_SNP [dm6]	C	G	2.971e^-4	0.824	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
3L	7150079	3L_7150079_SNP [dm3] 3L_7156979_SNP [dm6]	T	A	2.976e^-4	0.824	UTR_5_PRIME corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	23054077	3L_23054077_SNP [dm3] 3L_23060977_SNP [dm6]	T	C	2.980e^-4	0.824	INTERGENIC
2R	18226759	2R_18226759_SNP [dm3] 2R_22339254_SNP [dm6]	A	G	2.995e^-4	0.824	INTRON Liprin-gamma	TF binding site mE1_TFBS_chinmo
2R	12059725	2R_12059725_DEL [dm3] 2R_16172220_DEL [dm6]	AAGG	A	2.997e^-4	0.824	INTRON Ptp52F	TF binding site mE1_TFBS_cad
2R	12059734	2R_12059734_SNP [dm3] 2R_16172229_SNP [dm6]	C	A	2.997e^-4	0.824	INTRON Ptp52F	TF binding site mE1_TFBS_cad
3L	10123780	3L_10123780_SNP [dm3] 3L_10130680_SNP [dm6]	A	T	2.999e^-4	0.824	INTRON dpr6
3L	5794565	3L_5794565_SNP [dm3] 3L_5801465_SNP [dm6]	A	G	2.999e^-4	0.824	INTRON S6k	TF binding site mE1_TFBS_cad
3L	8628082	3L_8628082_SNP [dm3] 3L_8634982_SNP [dm6]	C	T	3.002e^-4	0.824	UPSTREAM Cdc6 INTRON Zasp66
3R	12353413	3R_12353413_SNP [dm3] 3R_16527691_SNP [dm6]	A	G	3.008e^-4	0.824	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8680546	2L_8680546_SNP [dm3] 2L_8680546_SNP [dm6]	G	C	3.010e^-4	0.824	UPSTREAM CG9287 DOWNSTREAM CG9289 INTERGENIC
3L	3585592	3L_3585592_SNP [dm3] 3L_3585592_SNP [dm6]	C	T	3.019e^-4	0.824	INTRON Eip63E
3L	22343489	3L_22343489_SNP [dm3] 3L_22350389_SNP [dm6]	A	C	3.024e^-4	0.824	INTRON Ten-m	TF binding site BDTNP1_TFBS_twi
3R	26389895	3R_26389895_SNP [dm3] 3R_30564173_SNP [dm6]	T	A	3.026e^-4	0.824	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	17514961	2R_17514961_SNP [dm3] 2R_21627456_SNP [dm6]	G	T	3.030e^-4	0.824	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	21395653	3R_21395653_SNP [dm3] 3R_25569931_SNP [dm6]	G	A	3.031e^-4	0.824	INTRON msi
2L	12609552	2L_12609552_SNP [dm3] 2L_12609552_SNP [dm6]	A	G	3.032e^-4	0.824	DOWNSTREAM Ref2 INTRON nub	TF binding site BDTNP1_TFBS_dl
3R	22516155	3R_22516155_SNP [dm3] 3R_26690433_SNP [dm6]	T	C	3.039e^-4	0.824	INTERGENIC
2R	18023575	2R_18023575_SNP [dm3] 2R_22136070_SNP [dm6]	G	A	3.041e^-4	0.824	UPSTREAM a INTERGENIC
2L	828580	2L_828580_SNP [dm3] 2L_828580_SNP [dm6]	C	G	3.041e^-4	0.824	INTRON dock	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17393083	2L_17393083_SNP [dm3] 2L_17393083_SNP [dm6]	A	C	3.045e^-4	0.824	INTRON CLIP-190
2L	10295788	2L_10295788_DEL [dm3] 2L_10295788_DEL [dm6]	CTACCCATATTA...	C	3.048e^-4	0.824	UPSTREAM Hand DOWNSTREAM CYLD INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
X	10620154	X_10620154_SNP [dm3] X_10726121_SNP [dm6]	G	T	3.049e^-4	0.824	INTRON CG32676
2L	677343	2L_677343_SNP [dm3] 2L_677343_SNP [dm6]	T	C	3.055e^-4	0.824	INTRON ds
2R	16626934	2R_16626934_SNP [dm3] 2R_20739429_SNP [dm6]	A	T	3.055e^-4	0.824	INTRON dpr
2L	742491	2L_742491_SNP [dm3] 2L_742491_SNP [dm6]	A	C	3.061e^-4	0.824	UPSTREAM Eaat2 INTRON Eaat2
3R	25852565	3R_25852565_SNP [dm3] 3R_30026843_SNP [dm6]	C	T	3.080e^-4	0.824	UPSTREAM Axn INTRON Axn	TF binding site mE1_TFBS_HSA
2L	20219511	2L_20219511_DEL [dm3] 2L_20219511_DEL [dm6]	CACATACGTTTTTAAGAGAC...	C	3.082e^-4	0.824	INTERGENIC	transposable element FlyBase
3R	6970285	3R_6970285_SNP [dm3] 3R_11144563_SNP [dm6]	G	A	3.106e^-4	0.824	SYNONYMOUS_CODING CheA86a
2R	4812692	2R_4812692_SNP [dm3] 2R_8925187_SNP [dm6]	A	G	3.106e^-4	0.824	UTR_3_PRIME CG8243 UPSTREAM CG8237
3R	21679190	3R_21679190_SNP [dm3] 3R_25853468_SNP [dm6]	A	G	3.108e^-4	0.824	SYNONYMOUS_CODING CG5886
2R	12059723	2R_12059723_SNP [dm3] 2R_16172218_SNP [dm6]	T	G	3.108e^-4	0.824	INTRON Ptp52F	TF binding site mE1_TFBS_cad
3R	16356843	3R_16356843_SNP [dm3] 3R_20531121_SNP [dm6]	A	G	3.114e^-4	0.824	INTERGENIC
3L	11139991	3L_11139991_DEL [dm3] 3L_11146891_DEL [dm6]	CC	C	3.118e^-4	0.824	INTRON CG32082	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9241350	2L_9241350_SNP [dm3] 2L_9241350_SNP [dm6]	C	A	3.123e^-4	0.824	INTRON tai	TF binding site mE1_TFBS_chinmo
3R	24197015	3R_24197015_SNP [dm3] 3R_28371293_SNP [dm6]	G	T	3.124e^-4	0.824	INTERGENIC
2L	10917565	2L_10917565_SNP [dm3] 2L_10917565_SNP [dm6]	G	A	3.126e^-4	0.824	UTR_3_PRIME dpr2 DOWNSTREAM dpr2
3R	7282960	3R_7282960_SNP [dm3] 3R_11457238_SNP [dm6]	A	T	3.133e^-4	0.824	INTRON CG17230 & 1 other
3R	4376311	3R_4376311_SNP [dm3] 3R_8550589_SNP [dm6]	G	A	3.159e^-4	0.824	INTERGENIC
2L	11300339	2L_11300339_SNP [dm3] 2L_11300339_SNP [dm6]	G	A	3.162e^-4	0.824	INTERGENIC
3R	11125651	3R_11125651_DEL [dm3] 3R_15299929_DEL [dm6]	TT	T	3.165e^-4	0.824	INTRON Tm1
3R	27261333	3R_27261333_SNP [dm3] 3R_31435611_SNP [dm6]	C	T	3.166e^-4	0.824	INTRON Gprk2
3L	7159214	3L_7159214_SNP [dm3] 3L_7166114_SNP [dm6]	C	T	3.166e^-4	0.824	SYNONYMOUS_CODING Dscam2	TF binding site mE1_TFBS_cad
3L	1205019	3L_1205019_DEL [dm3] 3L_1205019_DEL [dm6]	CGTATTTACGGTGCGGC...	C	3.172e^-4	0.824	UPSTREAM CG9119 INTRON mwh	TF binding site mE1_TFBS_cad
2R	18043668	2R_18043668_SNP [dm3] 2R_22156163_SNP [dm6]	A	G	3.174e^-4	0.824	INTRON a	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	23414051	3R_23414051_SNP [dm3] 3R_27588329_SNP [dm6]	G	T	3.174e^-4	0.824	NON_SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19389209	2L_19389209_SNP [dm3] 2L_19389209_SNP [dm6]	G	A	3.184e^-4	0.824	INTRON CG17549	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	4827223	2R_4827223_SNP [dm3] 2R_8939718_SNP [dm6]	C	T	3.189e^-4	0.824	SYNONYMOUS_CODING FANCI UPSTREAM CG13748
2R	4827844	2R_4827844_SNP [dm3] 2R_8940339_SNP [dm6]	C	A	3.189e^-4	0.824	UPSTREAM CG13748 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8011010	3L_8011010_SNP [dm3] 3L_8017910_SNP [dm6]	C	T	3.196e^-4	0.824	INTRON nmo
3R	23562922	3R_23562922_SNP [dm3] 3R_27737200_SNP [dm6]	C	T	3.199e^-4	0.824	INTRON Ets98B	TF binding site BDTNP1_TFBS_dl
3R	23567469	3R_23567469_SNP [dm3] 3R_27741747_SNP [dm6]	C	T	3.210e^-4	0.824	INTRON Ets98B
3R	17732309	3R_17732309_INS [dm3] 3R_21906587_INS [dm6]	A	AA	3.210e^-4	0.824	UTR_3_PRIME CG6678
X	15216903	X_15216903_SNP [dm3] X_15322870_SNP [dm6]	C	T	3.213e^-4	0.824	NON_SYNONYMOUS_CODING Top1 UPSTREAM Top1 INTRON Top1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3586729	X_3586729_SNP [dm3] X_3692696_SNP [dm6]	A	G	3.228e^-4	0.824	INTRON Mnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	1755296	3L_1755296_SNP [dm3] 3L_1755296_SNP [dm6]	G	T	3.229e^-4	0.824	UPSTREAM CG8001 & 1 other INTRON Cht2	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
X	10772729	X_10772729_SNP [dm3] X_10878696_SNP [dm6]	G	A	3.231e^-4	0.824	SYNONYMOUS_CODING Ork1 UPSTREAM CG1637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23562809	3R_23562809_SNP [dm3] 3R_27737087_SNP [dm6]	C	G	3.233e^-4	0.824	START_GAINED Ets98B UTR_5_PRIME Ets98B	TF binding site BDTNP1_TFBS_dl
3R	17299190	3R_17299190_SNP [dm3] 3R_21473468_SNP [dm6]	G	A	3.233e^-4	0.824	INTERGENIC
3R	17264949	3R_17264949_SNP [dm3] 3R_21439227_SNP [dm6]	T	C	3.244e^-4	0.824	INTERGENIC
3R	11357258	3R_11357258_DEL [dm3] 3R_15531536_DEL [dm6]	ATG	A	3.246e^-4	0.824	UPSTREAM CG31296 DOWNSTREAM CG18522 INTERGENIC
X	16945584	X_16945584_SNP [dm3] X_17051551_SNP [dm6]	G	A	3.253e^-4	0.824	INTRON CG45002
3L	4021609	3L_4021609_SNP [dm3] 3L_4021609_SNP [dm6]	G	T	3.255e^-4	0.824	SYNONYMOUS_CODING Mul1 DOWNSTREAM fd64A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6355883	2L_6355883_SNP [dm3] 2L_6355883_SNP [dm6]	C	G	3.261e^-4	0.824	INTRON ppk14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7170408	3L_7170408_SNP [dm3] 3L_7177308_SNP [dm6]	T	A	3.267e^-4	0.824	INTRON Dscam2
3R	17732321	3R_17732321_SNP [dm3] 3R_21906599_SNP [dm6]	T	C	3.275e^-4	0.824	UTR_3_PRIME CG6678
2R	16965137	2R_16965137_SNP [dm3] 2R_21077632_SNP [dm6]	C	T	3.275e^-4	0.824	INTRON Treh
2R	4849739	2R_4849739_SNP [dm3] 2R_8962234_SNP [dm6]	C	T	3.276e^-4	0.824	UTR_3_PRIME babo DOWNSTREAM CG8216
3L	7459356	3L_7459356_SNP [dm3] 3L_7466256_SNP [dm6]	C	G	3.287e^-4	0.824	UTR_5_PRIME CG42661 & 1 other UTR_3_PRIME CG42660
3L	11572131	3L_11572131_SNP [dm3] 3L_11579031_SNP [dm6]	C	T	3.288e^-4	0.824	UPSTREAM CG33270 DOWNSTREAM CG43390 INTERGENIC
3L	11139288	3L_11139288_SNP [dm3] 3L_11146188_SNP [dm6]	A	T	3.290e^-4	0.824	INTRON CG32082
3R	21759449	3R_21759449_SNP [dm3] 3R_25933727_SNP [dm6]	C	G	3.296e^-4	0.824	INTRON CCAP-R
2L	5853784	2L_5853784_SNP [dm3] 2L_5853784_SNP [dm6]	T	A	3.298e^-4	0.824	INTRON TrissinR	TF binding site BDTNP1_TFBS_sna
2L	11300283	2L_11300283_DEL [dm3] 2L_11300283_DEL [dm6]	TAGG	A	3.298e^-4	0.824	INTERGENIC
3L	2392325	3L_2392325_SNP [dm3] 3L_2392325_SNP [dm6]	C	T	3.300e^-4	0.824	INTRON CG45186
X	18964825	X_18964825_SNP [dm3] X_19070792_SNP [dm6]	C	G	3.304e^-4	0.824	INTERGENIC
3L	3475607	3L_3475607_SNP [dm3] 3L_3475607_SNP [dm6]	T	C	3.305e^-4	0.824	INTRON CG42324
X	20574018	X_20574018_SNP [dm3] X_20702991_SNP [dm6]	G	T	3.305e^-4	0.824	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	534247	3L_534247_SNP [dm3] 3L_534247_SNP [dm6]	C	A	3.314e^-4	0.824	INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	554273	3L_554273_SNP [dm3] 3L_554273_SNP [dm6]	G	C	3.319e^-4	0.824	INTRON hipk
2R	12059724	2R_12059724_SNP [dm3] 2R_16172219_SNP [dm6]	T	A	3.321e^-4	0.824	INTRON Ptp52F	TF binding site mE1_TFBS_cad
3R	21926739	3R_21926739_SNP [dm3] 3R_26101017_SNP [dm6]	T	A	3.327e^-4	0.824	INTERGENIC
3L	557404	3L_557404_SNP [dm3] 3L_557404_SNP [dm6]	A	G	3.333e^-4	0.824	INTRON hipk
2R	7577593	2R_7577593_SNP [dm3] 2R_11690088_SNP [dm6]	C	G	3.336e^-4	0.824	INTRON wal
3R	10296265	3R_10296265_DEL [dm3] 3R_14470543_DEL [dm6]	ACGATTCT	C	3.336e^-4	0.824	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10436474	3L_10436474_INS [dm3] 3L_10443374_INS [dm6]	CC	TTATTAA	3.341e^-4	0.824	INTERGENIC
3R	20343264	3R_20343264_SNP [dm3] 3R_24517542_SNP [dm6]	T	C	3.342e^-4	0.824	UPSTREAM Pp1alpha-96A INTRON CG13617	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	17933057	X_17933057_SNP [dm3] X_18039024_SNP [dm6]	T	A	3.343e^-4	0.824	INTRON Sh
3L	1060962	3L_1060962_SNP [dm3] 3L_1060962_SNP [dm6]	T	A	3.343e^-4	0.824	INTRON bab1
X	1863519	X_1863519_SNP [dm3] X_1969486_SNP [dm6]	T	A	3.349e^-4	0.824	INTRON Hr4
X	15991729	X_15991729_SNP [dm3] X_16097696_SNP [dm6]	T	G	3.353e^-4	0.824	SPLICE_SITE_REGION CG42354 & 1 other INTRON CG42354 & 1 other	TF binding site mE1_TFBS_sens
X	1642238	X_1642238_SNP [dm3] X_1748205_SNP [dm6]	G	A	3.355e^-4	0.824	SYNONYMOUS_CODING Scgdelta	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7969749	3L_7969749_SNP [dm3] 3L_7976649_SNP [dm6]	C	T	3.358e^-4	0.824	UPSTREAM HP4 INTRON CG8209	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	748259	3L_748259_SNP [dm3] 3L_748259_SNP [dm6]	G	A	3.359e^-4	0.824	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	20985112	3R_20985112_SNP [dm3] 3R_25159390_SNP [dm6]	C	T	3.361e^-4	0.824	INTERGENIC
3R	17732331	3R_17732331_SNP [dm3] 3R_21906609_SNP [dm6]	A	G	3.364e^-4	0.824	UTR_3_PRIME CG6678
2R	3895175	2R_3895175_SNP [dm3] 2R_8007670_SNP [dm6]	G	A	3.387e^-4	0.824	DOWNSTREAM Odc1 INTRON Odc2	TF binding site mE1_TFBS_cad
3R	4899014	3R_4899014_SNP [dm3] 3R_9073292_SNP [dm6]	G	A	3.391e^-4	0.824	INTRON pum
2R	16965135	2R_16965135_SNP [dm3] 2R_21077630_SNP [dm6]	C	T	3.399e^-4	0.824	INTRON Treh
X	4208986	X_4208986_SNP [dm3] X_4314953_SNP [dm6]	T	C	3.400e^-4	0.824	NON_SYNONYMOUS_CODING mei-9 UPSTREAM CR44957
3L	7453428	3L_7453428_SNP [dm3] 3L_7460328_SNP [dm6]	C	T	3.403e^-4	0.824	INTERGENIC
3L	22349038	3L_22349038_SNP [dm3] 3L_22355938_SNP [dm6]	G	A	3.408e^-4	0.824	INTRON Ten-m	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7123063	3L_7123063_SNP [dm3] 3L_7129963_SNP [dm6]	A	C	3.410e^-4	0.824	UPSTREAM CG8628 DOWNSTREAM CG15829 INTERGENIC
2R	4852528	2R_4852528_SNP [dm3] 2R_8965023_SNP [dm6]	A	T	3.413e^-4	0.824	INTRON CG8216
3L	3448194	3L_3448194_INS [dm3] 3L_3448194_INS [dm6]	G	GG	3.415e^-4	0.824	INTRON eIF5B
2R	3962958	2R_3962958_SNP [dm3] 2R_8075453_SNP [dm6]	G	A	3.417e^-4	0.824	UTR_3_PRIME lig INTRON lig
2L	14207378	2L_14207378_DEL [dm3] 2L_14207378_DEL [dm6]	AA	A	3.417e^-4	0.824	INTRON Dyrk2
2R	4824510	2R_4824510_SNP [dm3] 2R_8937005_SNP [dm6]	T	A	3.423e^-4	0.824	NON_SYNONYMOUS_CODING FANCI	TF binding site mE1_TFBS_sens
3R	26636502	3R_26636502_SNP [dm3] 3R_30810780_SNP [dm6]	C	A	3.423e^-4	0.824	INTRON cindr	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_sens
X	17932956	X_17932956_SNP [dm3] X_18038923_SNP [dm6]	T	G	3.428e^-4	0.824	INTRON Sh
2L	7169560	2L_7169560_SNP [dm3] 2L_7169560_SNP [dm6]	C	T	3.434e^-4	0.824	INTERGENIC
3L	3435464	3L_3435464_SNP [dm3] 3L_3435464_SNP [dm6]	C	G	3.438e^-4	0.824	INTRON eIF5B	TF binding site BDTNP1_TFBS_twi
X	2818126	X_2818126_SNP [dm3] X_2924093_SNP [dm6]	C	G	3.439e^-4	0.824	NON_SYNONYMOUS_CODING CG3588 UTR_3_PRIME CG3588 DOWNSTREAM CG3588 INTRON kirre	TF binding site mE1_TFBS_chinmo
2L	11024763	2L_11024763_SNP [dm3] 2L_11024763_SNP [dm6]	G	C	3.441e^-4	0.824	INTRON Samuel	TF binding site mE1_TFBS_cad
2R	7577588	2R_7577588_SNP [dm3] 2R_11690083_SNP [dm6]	C	G	3.442e^-4	0.824	INTRON wal
2R	7577597	2R_7577597_SNP [dm3] 2R_11690092_SNP [dm6]	A	T	3.451e^-4	0.824	INTRON wal
2R	7577601	2R_7577601_SNP [dm3] 2R_11690096_SNP [dm6]	A	T	3.451e^-4	0.824	INTRON wal
3R	23363369	3R_23363369_SNP [dm3] 3R_27537647_SNP [dm6]	A	G	3.456e^-4	0.824	UPSTREAM CR44288 EXON CR44289
3R	24016025	3R_24016025_SNP [dm3] 3R_28190303_SNP [dm6]	A	T	3.457e^-4	0.824	INTRON CG34354
2L	3872255	2L_3872255_SNP [dm3] 2L_3872255_SNP [dm6]	T	C	3.459e^-4	0.824	SYNONYMOUS_CODING CG31957 DOWNSTREAM Cep97 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	16066417	3R_16066417_SNP [dm3] 3R_20240695_SNP [dm6]	A	G	3.467e^-4	0.824	INTRON Nlg4
3L	7461005	3L_7461005_SNP [dm3] 3L_7467905_SNP [dm6]	T	A	3.469e^-4	0.824	INTRON Tsp66A & 2 others	TF binding site BDTNP1_TFBS_twi
2L	20151141	2L_20151141_SNP [dm3] 2L_20151141_SNP [dm6]	A	G	3.469e^-4	0.824	INTERGENIC	transposable element FlyBase
X	1640877	X_1640877_SNP [dm3] X_1746844_SNP [dm6]	C	G	3.472e^-4	0.824	INTRON Scgdelta	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
X	2364336	X_2364336_MNP [dm3] X_2470303_MNP [dm6]	GTG	AAA	3.472e^-4	0.824	UPSTREAM boi DOWNSTREAM trol INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Trl
3R	6509126	3R_6509126_SNP [dm3] 3R_10683404_SNP [dm6]	T	A	3.473e^-4	0.824	INTRON CR44230
2L	2309894	2L_2309894_SNP [dm3] 2L_2309894_SNP [dm6]	T	A	3.477e^-4	0.824	INTRON CG9967
X	970715	X_970715_SNP [dm3] X_1076682_SNP [dm6]	T	G	3.480e^-4	0.824	SYNONYMOUS_CODING CG3655 INTRON CR44779	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	18590781	3L_18590781_SNP [dm3] 3L_18597681_SNP [dm6]	G	C	3.481e^-4	0.824	UPSTREAM CR45390 DOWNSTREAM CR45389 INTERGENIC
X	1795518	X_1795518_SNP [dm3] X_1901485_SNP [dm6]	T	G	3.482e^-4	0.824	NON_SYNONYMOUS_CODING CG32803 UTR_5_PRIME CG32803 UPSTREAM arm & 1 other DOWNSTREAM CG32801	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	24013780	3R_24013780_SNP [dm3] 3R_28188058_SNP [dm6]	G	T	3.483e^-4	0.824	INTRON CG34354	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11300289	2L_11300289_SNP [dm3] 2L_11300289_SNP [dm6]	T	G	3.490e^-4	0.824	INTERGENIC
2L	6292209	2L_6292209_SNP [dm3] 2L_6292209_SNP [dm6]	C	G	3.492e^-4	0.824	DOWNSTREAM Ddr INTRON Ddr	TF binding site mE1_TFBS_cad
3L	7170340	3L_7170340_SNP [dm3] 3L_7177240_SNP [dm6]	A	T	3.495e^-4	0.824	INTRON Dscam2
2L	5030430	2L_5030430_SNP [dm3] 2L_5030430_SNP [dm6]	T	A	3.496e^-4	0.824	INTRON Cg25C	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	10436465	3L_10436465_INS [dm3] 3L_10443365_INS [dm6]	T	TATAAC	3.502e^-4	0.824	INTERGENIC
3L	7170411	3L_7170411_SNP [dm3] 3L_7177311_SNP [dm6]	C	T	3.503e^-4	0.824	INTRON Dscam2
2L	864222	2L_864222_SNP [dm3] 2L_864222_SNP [dm6]	A	T	3.507e^-4	0.824	SYNONYMOUS_CODING aru	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22408033	3L_22408033_SNP [dm3] 3L_22414933_SNP [dm6]	C	T	3.513e^-4	0.824	INTERGENIC
3R	23910759	3R_23910759_SNP [dm3] 3R_28085037_SNP [dm6]	G	A	3.520e^-4	0.824	DOWNSTREAM CG34362 INTRON CG34362
3R	27261332	3R_27261332_SNP [dm3] 3R_31435610_SNP [dm6]	C	A	3.521e^-4	0.824	INTRON Gprk2
2L	6846064	2L_6846064_SNP [dm3] 2L_6846064_SNP [dm6]	T	A	3.524e^-4	0.824	INTERGENIC
X	13628934	X_13628934_SNP [dm3] X_13734901_SNP [dm6]	A	T	3.531e^-4	0.824	INTRON g
2L	14207191	2L_14207191_INS [dm3] 2L_14207191_INS [dm6]	A	AC	3.533e^-4	0.824	INTRON Dyrk2
3L	12219881	3L_12219881_INS [dm3] 3L_12226781_INS [dm6]	T	TT	3.538e^-4	0.824	INTRON app
3L	17406708	3L_17406708_SNP [dm3] 3L_17413608_SNP [dm6]	A	C	3.542e^-4	0.824	INTRON blot	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9405980	2L_9405980_SNP [dm3] 2L_9405980_SNP [dm6]	G	T	3.544e^-4	0.824	UTR_5_PRIME Shawl
2L	16209555	2L_16209555_SNP [dm3] 2L_16209555_SNP [dm6]	T	C	3.544e^-4	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1842872	X_1842872_SNP [dm3] X_1948839_SNP [dm6]	A	G	3.546e^-4	0.824	INTRON Hr4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3R	2917621	3R_2917621_SNP [dm3] 3R_7091899_SNP [dm6]	C	T	3.546e^-4	0.824	DOWNSTREAM CR43685 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8328861	3L_8328861_SNP [dm3] 3L_8335761_SNP [dm6]	G	T	3.554e^-4	0.824	UPSTREAM Cpr66Cb INTERGENIC
2L	14488780	2L_14488780_DEL [dm3] 2L_14488780_DEL [dm6]	TT	T	3.554e^-4	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12663287	3R_12663287_SNP [dm3] 3R_16837565_SNP [dm6]	G	A	3.564e^-4	0.824	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	8628033	3L_8628033_SNP [dm3] 3L_8634933_SNP [dm6]	G	T	3.579e^-4	0.824	UPSTREAM Cdc6 INTRON Zasp66
X	17943503	X_17943503_SNP [dm3] X_18049470_SNP [dm6]	T	A	3.579e^-4	0.824	DOWNSTREAM CG15373 INTRON Sh
X	17933020	X_17933020_SNP [dm3] X_18038987_SNP [dm6]	C	T	3.581e^-4	0.824	INTRON Sh
3R	26390211	3R_26390211_SNP [dm3] 3R_30564489_SNP [dm6]	G	A	3.582e^-4	0.824	INTRON tmod	TF binding site BDTNP1_TFBS_dl
2R	16497408	2R_16497408_DEL [dm3] 2R_20609903_DEL [dm6]	TT	T	3.582e^-4	0.824	INTRON Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17402202	3L_17402202_SNP [dm3] 3L_17409102_SNP [dm6]	A	C	3.587e^-4	0.824	INTRON blot	TF binding site mE1_TFBS_cad
2R	7577596	2R_7577596_SNP [dm3] 2R_11690091_SNP [dm6]	A	C	3.593e^-4	0.824	INTRON wal
2R	4830975	2R_4830975_SNP [dm3] 2R_8943470_SNP [dm6]	C	G	3.595e^-4	0.824	UPSTREAM CR44274 DOWNSTREAM CR44273 & 1 other INTERGENIC
3R	4929747	3R_4929747_SNP [dm3] 3R_9104025_SNP [dm6]	T	C	3.601e^-4	0.824	INTRON pum
2L	16454048	2L_16454048_SNP [dm3] 2L_16454048_SNP [dm6]	T	A	3.602e^-4	0.824	UTR_3_PRIME Idgf3	regulatory region REDfly_CRMs
3R	23029953	3R_23029953_SNP [dm3] 3R_27204231_SNP [dm6]	G	A	3.605e^-4	0.824	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	11193556	2L_11193556_SNP [dm3] 2L_11193556_SNP [dm6]	T	C	3.608e^-4	0.824	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da
3R	21926738	3R_21926738_SNP [dm3] 3R_26101016_SNP [dm6]	T	A	3.619e^-4	0.824	INTERGENIC
3L	7460730	3L_7460730_SNP [dm3] 3L_7467630_SNP [dm6]	T	C	3.620e^-4	0.824	SYNONYMOUS_CODING Tsp66A UTR_3_PRIME CG42660 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5400105	2L_5400105_SNP [dm3] 2L_5400105_SNP [dm6]	A	C	3.622e^-4	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25810723	3R_25810723_SNP [dm3] 3R_29985001_SNP [dm6]	T	C	3.623e^-4	0.824	INTRON CG7896
3R	19447629	3R_19447629_SNP [dm3] 3R_23621907_SNP [dm6]	A	C	3.623e^-4	0.824	INTRON CG31145
3R	20673258	3R_20673258_SNP [dm3] 3R_24847536_SNP [dm6]	G	T	3.624e^-4	0.824	INTRON Esp
2L	2309944	2L_2309944_SNP [dm3] 2L_2309944_SNP [dm6]	A	T	3.630e^-4	0.824	INTRON CG9967
3R	25602927	3R_25602927_SNP [dm3] 3R_29777205_SNP [dm6]	C	T	3.632e^-4	0.824	INTRON kay
X	7386642	X_7386642_SNP [dm3] X_7492609_SNP [dm6]	G	A	3.634e^-4	0.824	INTRON CG43278
3R	13555517	3R_13555517_SNP [dm3] 3R_17729795_SNP [dm6]	T	C	3.635e^-4	0.824	INTRON Lgr1
2L	7272401	2L_7272401_SNP [dm3] 2L_7272401_SNP [dm6]	T	C	3.645e^-4	0.824	INTRON Wnt4	TF binding site mE1_TFBS_HSA
3L	22343069	3L_22343069_SNP [dm3] 3L_22349969_SNP [dm6]	G	A	3.646e^-4	0.824	INTRON Ten-m	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	7457651	3L_7457651_SNP [dm3] 3L_7464551_SNP [dm6]	G	A	3.646e^-4	0.824	UPSTREAM Tsp66A & 2 others INTERGENIC
3L	7457654	3L_7457654_SNP [dm3] 3L_7464554_SNP [dm6]	T	C	3.646e^-4	0.824	UPSTREAM Tsp66A & 2 others INTERGENIC
2L	2884798	2L_2884798_SNP [dm3] 2L_2884798_SNP [dm6]	T	A	3.664e^-4	0.826	INTRON NTPase	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_Trl mE1_TFBS_Ubx
3L	7127249	3L_7127249_SNP [dm3] 3L_7134149_SNP [dm6]	C	T	3.665e^-4	0.826	UPSTREAM melt DOWNSTREAM Dbi INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	11188088	X_11188088_SNP [dm3] X_11294055_SNP [dm6]	A	G	3.689e^-4	0.83	UPSTREAM CG44422 INTRON CG44422	TF binding site BDTNP1_TFBS_dl
3R	24013420	3R_24013420_SNP [dm3] 3R_28187698_SNP [dm6]	T	C	3.695e^-4	0.83	INTRON CG34354	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1640886	X_1640886_SNP [dm3] X_1746853_SNP [dm6]	C	T	3.703e^-4	0.83	INTRON Scgdelta	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3L	6325562	3L_6325562_SNP [dm3] 3L_6332462_SNP [dm6]	T	G	3.707e^-4	0.83	SPLICE_SITE_REGION CG13300 INTRON CG13300	TF binding site mE1_TFBS_chinmo
3L	18102077	3L_18102077_SNP [dm3] 3L_18108977_SNP [dm6]	G	A	3.728e^-4	0.83	SYNONYMOUS_CODING CG5147 UPSTREAM mus304	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	16641223	3L_16641223_INS [dm3] 3L_16648123_INS [dm6]	A	AA	3.737e^-4	0.83	UPSTREAM Abl DOWNSTREAM Baldspot INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	18101909	3L_18101909_SNP [dm3] 3L_18108809_SNP [dm6]	C	T	3.742e^-4	0.83	SYNONYMOUS_CODING CG5147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	1764446	X_1764446_SNP [dm3] X_1870413_SNP [dm6]	A	G	3.752e^-4	0.83	SYNONYMOUS_CODING CG14803	TF binding site mE1_TFBS_chinmo
3R	24179392	3R_24179392_SNP [dm3] 3R_28353670_SNP [dm6]	C	G	3.753e^-4	0.83	DOWNSTREAM Or98b INTERGENIC
3L	1528964	3L_1528964_SNP [dm3] 3L_1528964_SNP [dm6]	A	T	3.757e^-4	0.83	DOWNSTREAM Ir62a INTRON CG12090
3L	4057418	3L_4057418_SNP [dm3] 3L_4057418_SNP [dm6]	G	A	3.758e^-4	0.83	SPLICE_SITE_REGION CG1136 INTRON CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16018965	3R_16018965_SNP [dm3] 3R_20193243_SNP [dm6]	C	T	3.759e^-4	0.83	INTERGENIC
2L	12414766	2L_12414766_MNP [dm3] 2L_12414766_MNP [dm6]	TGA	CAG	3.772e^-4	0.83	INTRON vir-1
3L	3256220	3L_3256220_SNP [dm3] 3L_3256220_SNP [dm6]	G	A	3.777e^-4	0.83	INTERGENIC
2R	4849002	2R_4849002_SNP [dm3] 2R_8961497_SNP [dm6]	T	C	3.782e^-4	0.83	UTR_3_PRIME babo
3R	11455603	3R_11455603_SNP [dm3] 3R_15629881_SNP [dm6]	G	A	3.782e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3637447	3L_3637447_SNP [dm3] 3L_3637447_SNP [dm6]	T	A	3.784e^-4	0.83	INTRON dar1
2L	14207325	2L_14207325_SNP [dm3] 2L_14207325_SNP [dm6]	A	G	3.787e^-4	0.83	INTRON Dyrk2
3L	1210256	3L_1210256_SNP [dm3] 3L_1210256_SNP [dm6]	A	T	3.790e^-4	0.83	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
2R	14797138	2R_14797138_SNP [dm3] 2R_18909633_SNP [dm6]	C	T	3.790e^-4	0.83	SYNONYMOUS_CODING Vha100-3 INTRON sano	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7723474	3L_7723474_SNP [dm3] 3L_7730374_SNP [dm6]	G	A	3.797e^-4	0.83	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25602933	3R_25602933_INS [dm3] 3R_29777211_INS [dm6]	A	AATGGCTAT	3.798e^-4	0.83	INTRON kay
3R	25602936	3R_25602936_INS [dm3] 3R_29777214_INS [dm6]	A	ACCCACG	3.798e^-4	0.83	INTRON kay
3L	7170396	3L_7170396_SNP [dm3] 3L_7177296_SNP [dm6]	G	A	3.799e^-4	0.83	INTRON Dscam2
3R	25250636	3R_25250636_SNP [dm3] 3R_29424914_SNP [dm6]	G	A	3.807e^-4	0.83	INTRON Ptp99A
3R	4820878	3R_4820878_SNP [dm3] 3R_8995156_SNP [dm6]	C	T	3.809e^-4	0.83	UTR_3_PRIME CG11975 DOWNSTREAM CG31100 & 1 other
3L	7127324	3L_7127324_SNP [dm3] 3L_7134224_SNP [dm6]	G	A	3.818e^-4	0.83	UPSTREAM melt DOWNSTREAM Dbi INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7147011	3L_7147011_SNP [dm3] 3L_7153911_SNP [dm6]	A	G	3.818e^-4	0.83	INTRON corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1538887	3L_1538887_SNP [dm3] 3L_1538887_SNP [dm6]	A	G	3.823e^-4	0.83	SYNONYMOUS_CODING CG7852	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6996543	3L_6996543_SNP [dm3] 3L_7003443_SNP [dm6]	T	A	3.823e^-4	0.83	INTRON Mp
3R	24066829	3R_24066829_SNP [dm3] 3R_28241107_SNP [dm6]	G	A	3.836e^-4	0.83	DOWNSTREAM CG34354 INTERGENIC
X	17938145	X_17938145_SNP [dm3] X_18044112_SNP [dm6]	T	C	3.838e^-4	0.83	UTR_5_PRIME CG15373 INTRON Sh
3L	7777752	3L_7777752_SNP [dm3] 3L_7784652_SNP [dm6]	G	A	3.840e^-4	0.83	INTRON CG32369
3R	24179380	3R_24179380_SNP [dm3] 3R_28353658_SNP [dm6]	G	T	3.841e^-4	0.83	DOWNSTREAM Or98b INTERGENIC
3L	1448779	3L_1448779_SNP [dm3] 3L_1448779_SNP [dm6]	C	G	3.842e^-4	0.83	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_sens
3R	4493652	3R_4493652_SNP [dm3] 3R_8667930_SNP [dm6]	G	C	3.844e^-4	0.83	UTR_5_PRIME CG8036 DOWNSTREAM tRNA:Y1:85Ac & 2 others
X	21062783	X_21062783_SNP [dm3] X_21191756_SNP [dm6]	C	T	3.846e^-4	0.83	INTERGENIC	transposable element FlyBase
2R	9032479	2R_9032479_SNP [dm3] 2R_13144974_SNP [dm6]	A	T	3.853e^-4	0.83	DOWNSTREAM Ack-like INTRON Ack-like
X	18580742	X_18580742_SNP [dm3] X_18686709_SNP [dm6]	G	A	3.854e^-4	0.83	INTRON phm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	25147701	3R_25147701_SNP [dm3] 3R_29321979_SNP [dm6]	A	C	3.864e^-4	0.83	INTERGENIC
3R	10209089	3R_10209089_SNP [dm3] 3R_14383367_SNP [dm6]	C	T	3.872e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14527615	2L_14527615_SNP [dm3] 2L_14527615_SNP [dm6]	C	G	3.876e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	2984500	3L_2984500_SNP [dm3] 3L_2984500_SNP [dm6]	C	T	3.884e^-4	0.83	DOWNSTREAM CG2107 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12477381	2R_12477381_SNP [dm3] 2R_16589876_SNP [dm6]	A	G	3.887e^-4	0.83	SYNONYMOUS_CODING CG8306 UPSTREAM CG8311	TF binding site mE1_TFBS_bab1
2L	10283237	2L_10283237_SNP [dm3] 2L_10283237_SNP [dm6]	T	A	3.892e^-4	0.83	NON_SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad
3R	4495478	3R_4495478_SNP [dm3] 3R_8669756_SNP [dm6]	C	T	3.900e^-4	0.83	UTR_5_PRIME CG8036 UPSTREAM tRNA:Y1:85Aa & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7417484	3L_7417484_SNP [dm3] 3L_7424384_SNP [dm6]	A	T	3.902e^-4	0.83	INTRON CG42458
2L	20236124	2L_20236124_SNP [dm3] 2L_20236124_SNP [dm6]	T	G	3.903e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22379712	3L_22379712_SNP [dm3] 3L_22386612_SNP [dm6]	A	G	3.908e^-4	0.83	INTRON Ten-m	TF binding site mE1_TFBS_sens
2R	16965162	2R_16965162_SNP [dm3] 2R_21077657_SNP [dm6]	A	T	3.910e^-4	0.83	INTRON Treh
3L	16863079	3L_16863079_SNP [dm3] 3L_16869979_SNP [dm6]	C	A	3.912e^-4	0.83	INTRON Lmpt
3R	6966359	3R_6966359_SNP [dm3] 3R_11140637_SNP [dm6]	C	A	3.914e^-4	0.83	DOWNSTREAM CG4706 INTERGENIC
2L	4568922	2L_4568922_SNP [dm3] 2L_4568922_SNP [dm6]	G	A	3.922e^-4	0.831	INTRON dp	TF binding site mE1_TFBS_HSA
2L	640188	2L_640188_INS [dm3] 2L_640188_INS [dm6]	T	TATGATCTTATAGCT...	3.930e^-4	0.831	UTR_3_PRIME ds DOWNSTREAM ds
2L	5030186	2L_5030186_SNP [dm3] 2L_5030186_SNP [dm6]	A	T	3.933e^-4	0.831	UTR_5_PRIME Cg25C	regulatory region REDfly_CRMs TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	2081886	2L_2081886_SNP [dm3] 2L_2081886_SNP [dm6]	T	C	3.937e^-4	0.831	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3	TF binding site mE1_TFBS_inv
2R	7577572	2R_7577572_SNP [dm3] 2R_11690067_SNP [dm6]	T	C	3.938e^-4	0.831	INTRON wal	TF binding site mE1_TFBS_cad
2L	10295199	2L_10295199_SNP [dm3] 2L_10295199_SNP [dm6]	A	T	3.941e^-4	0.831	DOWNSTREAM CYLD INTRON Hand	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3828190	2R_3828190_DEL [dm3] 2R_7940685_DEL [dm6]	TA	T	3.969e^-4	0.834	INTRON CG30379	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	20148303	2L_20148303_SNP [dm3] 2L_20148303_SNP [dm6]	G	C	3.969e^-4	0.834	INTERGENIC
X	21061874	X_21061874_DEL [dm3] X_21190847_DEL [dm6]	GCCCATGCCCGATGCCCCTC...	A	3.982e^-4	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1250338	3R_1250338_SNP [dm3] 3R_5424616_SNP [dm6]	A	G	3.983e^-4	0.834	DOWNSTREAM CG12147 INTRON CG14669
3L	751407	3L_751407_DEL [dm3] 3L_751407_DEL [dm6]	ACTGTGG	A	3.990e^-4	0.834	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16018994	3R_16018994_SNP [dm3] 3R_20193272_SNP [dm6]	A	G	3.990e^-4	0.834	INTERGENIC
3L	1797532	3L_1797532_SNP [dm3] 3L_1797532_SNP [dm6]	G	T	3.992e^-4	0.834	SYNONYMOUS_CODING CG12020 DOWNSTREAM Cdc37	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	9332486	2R_9332486_SNP [dm3] 2R_13444981_SNP [dm6]	C	T	3.993e^-4	0.834	SYNONYMOUS_CODING cnn DOWNSTREAM CG30062
2L	15508302	2L_15508302_SNP [dm3] 2L_15508302_SNP [dm6]	G	T	3.998e^-4	0.834	INTERGENIC
3L	1196869	3L_1196869_DEL [dm3] 3L_1196869_DEL [dm6]	TTCCAAACT	T	4.002e^-4	0.834	INTRON Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12641112	2L_12641112_SNP [dm3] 2L_12641112_SNP [dm6]	T	C	4.007e^-4	0.834	UTR_5_PRIME Ref2
2R	17514985	2R_17514985_SNP [dm3] 2R_21627480_SNP [dm6]	A	G	4.009e^-4	0.834	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	20922697	3R_20922697_SNP [dm3] 3R_25096975_SNP [dm6]	A	C	4.020e^-4	0.834	UPSTREAM CG33095 & 1 other DOWNSTREAM fd96Cb INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10193015	3L_10193015_SNP [dm3] 3L_10199915_SNP [dm6]	C	T	4.022e^-4	0.834	INTRON ect
2R	19741275	2R_19741275_SNP [dm3] 2R_23853752_SNP [dm6]	G	A	4.025e^-4	0.834	SPLICE_SITE_REGION bgcn SYNONYMOUS_CODING bgcn DOWNSTREAM gbb	TF binding site mE1_TFBS_cad
2R	7577573	2R_7577573_SNP [dm3] 2R_11690068_SNP [dm6]	C	A	4.033e^-4	0.835	INTRON wal
X	14038551	X_14038551_SNP [dm3] X_14144518_SNP [dm6]	G	A	4.037e^-4	0.835	INTERGENIC
2R	15078367	2R_15078367_SNP [dm3] 2R_19190862_SNP [dm6]	G	A	4.049e^-4	0.836	INTRON hppy
3R	18205969	3R_18205969_SNP [dm3] 3R_22380247_SNP [dm6]	C	T	4.059e^-4	0.837	DOWNSTREAM CG18596 INTRON CG34149	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3R	24149660	3R_24149660_SNP [dm3] 3R_28323938_SNP [dm6]	T	C	4.062e^-4	0.837	NON_SYNONYMOUS_CODING larp UTR_5_PRIME larp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7126916	3L_7126916_SNP [dm3] 3L_7133816_SNP [dm6]	A	G	4.074e^-4	0.837	UPSTREAM melt DOWNSTREAM Dbi INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	833991	3L_833991_SNP [dm3] 3L_833991_SNP [dm6]	A	T	4.077e^-4	0.837	UPSTREAM CG42553 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3630110	3L_3630110_SNP [dm3] 3L_3630110_SNP [dm6]	G	A	4.085e^-4	0.837	INTRON dar1
3R	23564169	3R_23564169_SNP [dm3] 3R_27738447_SNP [dm6]	C	T	4.091e^-4	0.837	INTRON Ets98B
X	5585851	X_5585851_SNP [dm3] X_5691818_SNP [dm6]	T	A	4.091e^-4	0.837	UPSTREAM CR45525 INTRON cv
3L	7123099	3L_7123099_SNP [dm3] 3L_7129999_SNP [dm6]	T	C	4.094e^-4	0.837	UPSTREAM CG8628 DOWNSTREAM CG15829 INTERGENIC	TF binding site mE1_TFBS_cnc
X	9984194	X_9984194_SNP [dm3] X_10090161_SNP [dm6]	T	C	4.096e^-4	0.837	INTRON RhoU	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22408020	3L_22408020_SNP [dm3] 3L_22414920_SNP [dm6]	C	T	4.099e^-4	0.837	INTERGENIC
3L	9483605	3L_9483605_SNP [dm3] 3L_9490505_SNP [dm6]	G	T	4.103e^-4	0.837	NON_SYNONYMOUS_CODING CG32037 SPLICE_SITE_REGION CG32037	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	9984080	X_9984080_DEL [dm3] X_10090047_DEL [dm6]	TT	T	4.107e^-4	0.837	INTRON RhoU	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24202072	3R_24202072_SNP [dm3] 3R_28376350_SNP [dm6]	C	A	4.112e^-4	0.837	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	7272620	2L_7272620_SNP [dm3] 2L_7272620_SNP [dm6]	C	T	4.118e^-4	0.837	INTRON Wnt4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2996926	3L_2996926_SNP [dm3] 3L_2996926_SNP [dm6]	C	T	4.129e^-4	0.837	DOWNSTREAM CG2113 INTERGENIC
2L	14207382	2L_14207382_SNP [dm3] 2L_14207382_SNP [dm6]	C	A	4.133e^-4	0.837	INTRON Dyrk2
2L	8282212	2L_8282212_INS [dm3] 2L_8282212_INS [dm6]	C	CT	4.136e^-4	0.837	INTRON Btk29A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4099435	2L_4099435_SNP [dm3] 2L_4099435_SNP [dm6]	C	T	4.137e^-4	0.837	SYNONYMOUS_CODING ed	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	11336221	X_11336221_SNP [dm3] X_11442188_SNP [dm6]	A	G	4.138e^-4	0.837	UPSTREAM Sk1 INTRON Evi5	TF binding site BDTNP1_TFBS_dl
3L	386383	3L_386383_SNP [dm3] 3L_386383_SNP [dm6]	T	G	4.155e^-4	0.837	INTRON trh
3R	24009583	3R_24009583_SNP [dm3] 3R_28183861_SNP [dm6]	A	C	4.160e^-4	0.837	INTRON CG34354
3L	13190624	3L_13190624_SNP [dm3] 3L_13197524_SNP [dm6]	C	T	4.161e^-4	0.837	INTERGENIC
3L	17050578	3L_17050578_SNP [dm3] 3L_17057478_SNP [dm6]	A	T	4.164e^-4	0.837	SYNONYMOUS_CODING CG7724	TF binding site mE1_TFBS_cad
2L	3781364	2L_3781364_INS [dm3] 2L_3781364_INS [dm6]	T	TT	4.168e^-4	0.837	INTRON bowl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13655668	2R_13655668_SNP [dm3] 2R_17768163_SNP [dm6]	A	G	4.168e^-4	0.837	SYNONYMOUS_CODING CG18635 UPSTREAM CG14488	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	20782302	3R_20782302_DEL [dm3] 3R_24956580_DEL [dm6]	ATA	A	4.169e^-4	0.837	INTERGENIC
3L	22355457	3L_22355457_SNP [dm3] 3L_22362357_SNP [dm6]	C	T	4.173e^-4	0.837	INTRON Ten-m
3R	25122907	3R_25122907_SNP [dm3] 3R_29297185_SNP [dm6]	T	C	4.180e^-4	0.837	UPSTREAM CG14506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2L	2494784	2L_2494784_SNP [dm3] 2L_2494784_SNP [dm6]	C	T	4.180e^-4	0.837	INTRON oaf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18438828	2L_18438828_SNP [dm3] 2L_18438828_SNP [dm6]	A	C	4.190e^-4	0.837	INTERGENIC
3R	25222235	3R_25222235_SNP [dm3] 3R_29396513_SNP [dm6]	T	C	4.194e^-4	0.837	INTRON Ptp99A
3R	4447567	3R_4447567_SNP [dm3] 3R_8621845_SNP [dm6]	T	C	4.200e^-4	0.837	INTRON 5-HT2B
3R	26627174	3R_26627174_SNP [dm3] 3R_30801452_SNP [dm6]	T	C	4.202e^-4	0.837	INTRON wts
3L	11571913	3L_11571913_SNP [dm3] 3L_11578813_SNP [dm6]	G	A	4.202e^-4	0.837	UPSTREAM CG33270 DOWNSTREAM CG43390 INTERGENIC
3R	6671140	3R_6671140_SNP [dm3] 3R_10845418_SNP [dm6]	A	G	4.208e^-4	0.837	INTRON Cad86C
2L	5550418	2L_5550418_SNP [dm3] 2L_5550418_SNP [dm6]	C	T	4.215e^-4	0.837	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6996474	3L_6996474_SNP [dm3] 3L_7003374_SNP [dm6]	G	A	4.220e^-4	0.838	INTRON Mp
3R	26678779	3R_26678779_SNP [dm3] 3R_30853057_SNP [dm6]	C	T	4.229e^-4	0.839	SYNONYMOUS_CODING tll	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7123435	3L_7123435_SNP [dm3] 3L_7130335_SNP [dm6]	G	T	4.244e^-4	0.839	UPSTREAM CG8628 DOWNSTREAM CG15829 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	23569394	3R_23569394_INS [dm3] 3R_27743672_INS [dm6]	T	TT	4.246e^-4	0.839	INTRON Ets98B	TF binding site mE1_TFBS_cad
2R	2858639	2R_2858639_SNP [dm3] 2R_6971134_SNP [dm6]	T	A	4.246e^-4	0.839	UTR_5_PRIME mim & 1 other DOWNSTREAM Cyp6u1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1208596	3L_1208596_SNP [dm3] 3L_1208596_SNP [dm6]	T	A	4.252e^-4	0.839	UTR_5_PRIME mwh DOWNSTREAM LysB INTRON mwh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	1216141	3L_1216141_SNP [dm3] 3L_1216141_SNP [dm6]	C	T	4.266e^-4	0.839	INTRON mwh	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3L	751406	3L_751406_INS [dm3] 3L_751406_INS [dm6]	A	ACAGTCTTTAGCCCAC...	4.266e^-4	0.839	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26372311	3R_26372311_SNP [dm3] 3R_30546589_SNP [dm6]	T	C	4.267e^-4	0.839	SPLICE_SITE_DONOR tmod UPSTREAM tmod INTRON tmod
3L	11144514	3L_11144514_SNP [dm3] 3L_11151414_SNP [dm6]	A	T	4.268e^-4	0.839	UTR_5_PRIME CG32082 UPSTREAM CG6216
2R	17820668	2R_17820668_SNP [dm3] 2R_21933163_SNP [dm6]	T	A	4.271e^-4	0.839	INTRON Fili
2R	3804279	2R_3804279_SNP [dm3] 2R_7916774_SNP [dm6]	G	C	4.285e^-4	0.839	UPSTREAM Cul1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
3R	8509305	3R_8509305_SNP [dm3] 3R_12683583_SNP [dm6]	C	A	4.286e^-4	0.839	SYNONYMOUS_CODING kar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7115772	3R_7115772_SNP [dm3] 3R_11290050_SNP [dm6]	G	A	4.300e^-4	0.839	INTRON CR31386
X	9987601	X_9987601_SNP [dm3] X_10093568_SNP [dm6]	A	G	4.301e^-4	0.839	INTRON RhoU
3L	8627985	3L_8627985_SNP [dm3] 3L_8634885_SNP [dm6]	G	C	4.305e^-4	0.839	UPSTREAM Cdc6 INTRON Zasp66
2R	12059527	2R_12059527_SNP [dm3] 2R_16172022_SNP [dm6]	C	T	4.309e^-4	0.839	INTRON Ptp52F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	4924982	3R_4924982_SNP [dm3] 3R_9099260_SNP [dm6]	A	G	4.315e^-4	0.839	INTRON pum
2L	3839090	2L_3839090_SNP [dm3] 2L_3839090_SNP [dm6]	A	C	4.316e^-4	0.839	UTR_3_PRIME slp2
3L	10191807	3L_10191807_SNP [dm3] 3L_10198707_SNP [dm6]	A	T	4.331e^-4	0.839	INTRON ect
2L	2492801	2L_2492801_SNP [dm3] 2L_2492801_SNP [dm6]	A	T	4.332e^-4	0.839	UPSTREAM oaf & 1 other INTERGENIC	enhancer FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2984899	3L_2984899_SNP [dm3] 3L_2984899_SNP [dm6]	A	G	4.335e^-4	0.839	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	27329683	3R_27329683_SNP [dm3] 3R_31503961_SNP [dm6]	C	A	4.338e^-4	0.839	INTRON mey	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1797568	3L_1797568_SNP [dm3] 3L_1797568_SNP [dm6]	C	T	4.353e^-4	0.839	SYNONYMOUS_CODING CG12020 DOWNSTREAM Cdc37	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	7170401	3L_7170401_SNP [dm3] 3L_7177301_SNP [dm6]	C	T	4.354e^-4	0.839	INTRON Dscam2
3L	2512394	3L_2512394_SNP [dm3] 3L_2512394_SNP [dm6]	G	C	4.358e^-4	0.839	SYNONYMOUS_CODING Spn
2L	5090952	2L_5090952_SNP [dm3] 2L_5090952_SNP [dm6]	C	T	4.358e^-4	0.839	INTRON pgant5
X	21061753	X_21061753_SNP [dm3] X_21190726_SNP [dm6]	G	A	4.373e^-4	0.839	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4457013	2L_4457013_SNP [dm3] 2L_4457013_SNP [dm6]	T	A	4.373e^-4	0.839	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	7464079	3L_7464079_SNP [dm3] 3L_7470979_SNP [dm6]	A	T	4.379e^-4	0.839	UPSTREAM CG8543 & 1 other INTERGENIC
2L	20204316	2L_20204316_INS [dm3] 2L_20204316_INS [dm6]	C	CCAGAATTCGATTTTTTTGG...	4.391e^-4	0.839	INTERGENIC	transposable element FlyBase
2L	9553752	2L_9553752_SNP [dm3] 2L_9553752_SNP [dm6]	C	A	4.394e^-4	0.839	INTRON jp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17259341	X_17259341_SNP [dm3] X_17365308_SNP [dm6]	T	A	4.399e^-4	0.839	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	8520917	2R_8520917_SNP [dm3] 2R_12633412_SNP [dm6]	A	C	4.417e^-4	0.839	NON_SYNONYMOUS_CODING CG33792 UPSTREAM spt4 DOWNSTREAM CG33671 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
2L	14207383	2L_14207383_SNP [dm3] 2L_14207383_SNP [dm6]	G	A	4.417e^-4	0.839	INTRON Dyrk2
3R	13985930	3R_13985930_SNP [dm3] 3R_18160208_SNP [dm6]	A	T	4.420e^-4	0.839	UPSTREAM CR45104 DOWNSTREAM CG14315 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6996542	3L_6996542_SNP [dm3] 3L_7003442_SNP [dm6]	A	C	4.422e^-4	0.839	INTRON Mp
3R	27252334	3R_27252334_SNP [dm3] 3R_31426612_SNP [dm6]	G	A	4.427e^-4	0.839	INTRON Gprk2
3L	10436427	3L_10436427_SNP [dm3] 3L_10443327_SNP [dm6]	C	T	4.437e^-4	0.839	INTERGENIC
3L	10436436	3L_10436436_SNP [dm3] 3L_10443336_SNP [dm6]	C	T	4.437e^-4	0.839	INTERGENIC
2R	8919899	2R_8919899_SNP [dm3] 2R_13032394_SNP [dm6]	T	C	4.440e^-4	0.839	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	9282574	X_9282574_SNP [dm3] X_9388541_SNP [dm6]	T	C	4.448e^-4	0.839	INTRON mgl
X	6439631	X_6439631_SNP [dm3] X_6545598_SNP [dm6]	A	C	4.450e^-4	0.839	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26046721	3R_26046721_SNP [dm3] 3R_30220999_SNP [dm6]	T	A	4.457e^-4	0.839	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16306187	X_16306187_SNP [dm3] X_16412154_SNP [dm6]	A	G	4.459e^-4	0.839	SYNONYMOUS_CODING CG4301	TF binding site mE1_TFBS_chinmo
3L	22408125	3L_22408125_SNP [dm3] 3L_22415025_SNP [dm6]	G	T	4.462e^-4	0.839	INTERGENIC
2L	4186856	2L_4186856_SNP [dm3] 2L_4186856_SNP [dm6]	C	T	4.462e^-4	0.839	NON_SYNONYMOUS_CODING CG31961 DOWNSTREAM CR44057	TF binding site mE1_TFBS_sens
3L	7456856	3L_7456856_SNP [dm3] 3L_7463756_SNP [dm6]	G	C	4.469e^-4	0.839	INTERGENIC
3L	7146981	3L_7146981_INS [dm3] 3L_7153881_INS [dm6]	A	AC	4.472e^-4	0.839	INTRON corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21657159	3R_21657159_SNP [dm3] 3R_25831437_SNP [dm6]	G	T	4.486e^-4	0.839	UPSTREAM Mst57Db & 1 other DOWNSTREAM Mst57Da INTERGENIC	regulatory region REDfly_CRMs
3R	17256441	3R_17256441_SNP [dm3] 3R_21430719_SNP [dm6]	C	T	4.499e^-4	0.839	INTRON lbl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	24151875	3R_24151875_DEL [dm3] 3R_28326153_DEL [dm6]	TT	T	4.501e^-4	0.839	SPLICE_SITE_REGION larp UTR_5_PRIME larp INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21206153	3R_21206153_DEL [dm3] 3R_25380431_DEL [dm6]	CCACAGTGC	C	4.502e^-4	0.839	DOWNSTREAM alrm INTRON Fur1
3L	11572006	3L_11572006_SNP [dm3] 3L_11578906_SNP [dm6]	G	T	4.503e^-4	0.839	UPSTREAM CG33270 DOWNSTREAM CG43390 INTERGENIC
3L	7959891	3L_7959891_SNP [dm3] 3L_7966791_SNP [dm6]	A	G	4.504e^-4	0.839	INTERGENIC
X	2598584	X_2598584_SNP [dm3] X_2704551_SNP [dm6]	C	A	4.505e^-4	0.839	UPSTREAM eIF2B-beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run

By genomic position
Variant impact
Gene name

Gut_Number phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results