DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.161e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

937 significant hits at p-value < 0.001.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	12107801	3L_12107801_SNP [dm3] 3L_12114701_SNP [dm6]	A	G	1.718e^-5	0.867	INTERGENIC
X	20467196	X_20467196_SNP [dm3] X_20596169_SNP [dm6]	C	A	1.718e^-5	0.867	INTRON RunxA
X	13439484	X_13439484_SNP [dm3] X_13545451_SNP [dm6]	G	A	2.052e^-5	0.867	DOWNSTREAM Cpr12A INTERGENIC
2R	20934857	2R_20934857_SNP [dm3] 2R_25047334_SNP [dm6]	A	G	2.099e^-5	0.867	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	12432566	2R_12432566_SNP [dm3] 2R_16545061_SNP [dm6]	A	G	2.309e^-5	0.867	INTERGENIC
X	15151565	X_15151565_SNP [dm3] X_15257532_SNP [dm6]	G	A	2.337e^-5	0.867	INTERGENIC
2R	15998536	2R_15998536_SNP [dm3] 2R_20111031_SNP [dm6]	C	G	3.048e^-5	0.867	UPSTREAM 18w INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
X	3047189	X_3047189_SNP [dm3] X_3153156_SNP [dm6]	A	T	3.048e^-5	0.867	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	3047209	X_3047209_SNP [dm3] X_3153176_SNP [dm6]	C	T	3.048e^-5	0.867	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	10455292	3L_10455292_SNP [dm3] 3L_10462192_SNP [dm6]	T	C	3.187e^-5	0.867	SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_sens
2L	2053277	2L_2053277_SNP [dm3] 2L_2053277_SNP [dm6]	C	T	3.674e^-5	0.867	INTERGENIC
2L	2355935	2L_2355935_DEL [dm3] 2L_2355935_DEL [dm6]	ATGAAGA	A	3.674e^-5	0.867	INTRON CG9967 & 1 other
2R	8846262	2R_8846262_SNP [dm3] 2R_12958757_SNP [dm6]	T	G	3.957e^-5	0.867	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	3046522	3L_3046522_SNP [dm3] 3L_3046522_SNP [dm6]	A	G	3.957e^-5	0.867	UPSTREAM Sk2 INTRON scramb2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	13439472	X_13439472_SNP [dm3] X_13545439_SNP [dm6]	C	A	3.957e^-5	0.867	DOWNSTREAM Cpr12A INTERGENIC
X	13439474	X_13439474_SNP [dm3] X_13545441_SNP [dm6]	A	C	3.957e^-5	0.867	DOWNSTREAM Cpr12A INTERGENIC
X	13439488	X_13439488_SNP [dm3] X_13545455_SNP [dm6]	T	C	3.957e^-5	0.867	DOWNSTREAM Cpr12A INTERGENIC
X	13439495	X_13439495_SNP [dm3] X_13545462_SNP [dm6]	A	T	3.957e^-5	0.867	DOWNSTREAM Cpr12A INTERGENIC
2R	1721610	2R_1721610_SNP [dm3] 2R_5834105_SNP [dm6]	A	C	4.005e^-5	0.867	INTRON dpr12
2R	9790949	2R_9790949_SNP [dm3] 2R_13903444_SNP [dm6]	C	T	4.186e^-5	0.867	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_prd
X	16297099	X_16297099_SNP [dm3] X_16403066_SNP [dm6]	G	A	4.186e^-5	0.867	INTRON CG9981	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8559959	X_8559959_SNP [dm3] X_8665926_SNP [dm6]	T	C	4.186e^-5	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11520916	3L_11520916_SNP [dm3] 3L_11527816_SNP [dm6]	T	C	4.203e^-5	0.867	SPLICE_SITE_REGION Mob2 UTR_5_PRIME Mob2 INTRON Mob2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	18133985	3L_18133985_SNP [dm3] 3L_18140885_SNP [dm6]	T	C	4.203e^-5	0.867	INTRON gk
3L	1005300	3L_1005300_SNP [dm3] 3L_1005300_SNP [dm6]	T	A	4.253e^-5	0.867	INTRON trio
3L	3046481	3L_3046481_SNP [dm3] 3L_3046481_SNP [dm6]	A	G	4.588e^-5	0.867	UPSTREAM Sk2 INTRON scramb2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	238051	2R_238051_SNP [dm3] 2R_4350546_SNP [dm6]	T	C	5.254e^-5	0.867	SPLICE_SITE_REGION Gprk1 INTRON Gprk1
2L	15228808	2L_15228808_SNP [dm3] 2L_15228808_SNP [dm6]	A	T	5.628e^-5	0.867	UTR_3_PRIME ZnT35C
3L	10454574	3L_10454574_DEL [dm3] 3L_10461474_DEL [dm6]	TAAG	T	5.883e^-5	0.867	CODON_DELETION Gem3
2R	119278	2R_119278_SNP [dm3] 2R_4231773_SNP [dm6]	T	C	5.917e^-5	0.867	INTERGENIC
2R	123225	2R_123225_SNP [dm3] 2R_4235720_SNP [dm6]	C	G	5.917e^-5	0.867	DOWNSTREAM IntS3 INTERGENIC
2R	174069	2R_174069_SNP [dm3] 2R_4286564_SNP [dm6]	A	C	5.917e^-5	0.867	INTERGENIC
2R	187445	2R_187445_DEL [dm3] 2R_4299940_DEL [dm6]	CC	C	5.917e^-5	0.867	INTERGENIC
2R	195945	2R_195945_SNP [dm3] 2R_4308440_SNP [dm6]	T	C	5.917e^-5	0.867	INTERGENIC
2R	209617	2R_209617_SNP [dm3] 2R_4322112_SNP [dm6]	C	T	5.917e^-5	0.867	DOWNSTREAM Gprk1 INTERGENIC
2R	216417	2R_216417_SNP [dm3] 2R_4328912_SNP [dm6]	G	T	5.917e^-5	0.867	INTRON Gprk1
2R	216508	2R_216508_SNP [dm3] 2R_4329003_SNP [dm6]	C	T	5.917e^-5	0.867	INTRON Gprk1
2R	228562	2R_228562_SNP [dm3] 2R_4341057_SNP [dm6]	A	G	5.917e^-5	0.867	INTRON Gprk1
2R	234692	2R_234692_SNP [dm3] 2R_4347187_SNP [dm6]	C	T	5.917e^-5	0.867	INTRON Gprk1
2R	236138	2R_236138_SNP [dm3] 2R_4348633_SNP [dm6]	G	A	5.917e^-5	0.867	INTRON Gprk1
2R	238925	2R_238925_SNP [dm3] 2R_4351420_SNP [dm6]	T	G	5.917e^-5	0.867	INTRON Gprk1
2R	263803	2R_263803_SNP [dm3] 2R_4376298_SNP [dm6]	C	A	5.917e^-5	0.867	INTRON Gprk1
2R	276622	2R_276622_SNP [dm3] 2R_4389117_SNP [dm6]	T	A	5.917e^-5	0.867	INTRON Gprk1
2R	284982	2R_284982_MNP [dm3] 2R_4397477_MNP [dm6]	AGAATTT	TCTTAGA	5.917e^-5	0.867	INTRON Gprk1	TF binding site mE1_TFBS_cad
2R	288951	2R_288951_SNP [dm3] 2R_4401446_SNP [dm6]	G	A	5.917e^-5	0.867	INTRON Gprk1
2R	293117	2R_293117_SNP [dm3] 2R_4405612_SNP [dm6]	C	T	5.917e^-5	0.867	INTRON Gprk1
2R	294944	2R_294944_SNP [dm3] 2R_4407439_SNP [dm6]	G	T	5.917e^-5	0.867	INTRON Gprk1
2R	294945	2R_294945_SNP [dm3] 2R_4407440_SNP [dm6]	T	A	5.917e^-5	0.867	INTRON Gprk1
2R	297929	2R_297929_SNP [dm3] 2R_4410424_SNP [dm6]	C	T	5.917e^-5	0.867	INTRON Gprk1
2R	301623	2R_301623_DEL [dm3] 2R_4414118_DEL [dm6]	TTT	T	5.917e^-5	0.867	INTRON Gprk1
2R	314372	2R_314372_DEL [dm3] 2R_4426867_DEL [dm6]	ATTGGA	A	5.917e^-5	0.867	INTRON Gprk1
3L	6770288	3L_6770288_SNP [dm3] 3L_6777188_SNP [dm6]	C	G	5.917e^-5	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13439480	X_13439480_SNP [dm3] X_13545447_SNP [dm6]	T	C	5.947e^-5	0.867	DOWNSTREAM Cpr12A INTERGENIC
3L	7083413	3L_7083413_DEL [dm3] 3L_7090313_DEL [dm6]	AA	A	6.123e^-5	0.867	INTERGENIC
2L	1461857	2L_1461857_SNP [dm3] 2L_1461857_SNP [dm6]	G	A	6.242e^-5	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10797237	3L_10797237_SNP [dm3] 3L_10804137_SNP [dm6]	C	T	6.555e^-5	0.867	EXON CR44347
3L	10797240	3L_10797240_SNP [dm3] 3L_10804140_SNP [dm6]	A	T	6.555e^-5	0.867	EXON CR44347
2L	20864331	2L_20864331_SNP [dm3] 2L_20864331_SNP [dm6]	A	G	6.823e^-5	0.867	UPSTREAM CR9337 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb
3L	7087336	3L_7087336_SNP [dm3] 3L_7094236_SNP [dm6]	C	T	7.607e^-5	0.867	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
3L	1005298	3L_1005298_SNP [dm3] 3L_1005298_SNP [dm6]	T	C	7.988e^-5	0.867	INTRON trio
3L	1005321	3L_1005321_SNP [dm3] 3L_1005321_SNP [dm6]	A	C	7.988e^-5	0.867	INTRON trio
X	15813072	X_15813072_SNP [dm3] X_15919039_SNP [dm6]	A	C	7.988e^-5	0.867	SYNONYMOUS_CODING CG8909
2R	9793053	2R_9793053_SNP [dm3] 2R_13905548_SNP [dm6]	G	A	8.162e^-5	0.867	INTRON shot
2L	7484615	2L_7484615_INS [dm3] 2L_7484615_INS [dm6]	T	TAT	8.469e^-5	0.867	INTRON Ziz	TF binding site mE1_TFBS_inv
2R	16073754	2R_16073754_SNP [dm3] 2R_20186249_SNP [dm6]	A	G	9.045e^-5	0.867	INTERGENIC
3L	18850205	3L_18850205_SNP [dm3] 3L_18857105_SNP [dm6]	C	T	9.061e^-5	0.867	EXON CR45388
X	20467316	X_20467316_SNP [dm3] X_20596289_SNP [dm6]	C	T	9.061e^-5	0.867	INTRON RunxA
3R	18077710	3R_18077710_SNP [dm3] 3R_22251988_SNP [dm6]	A	G	9.236e^-5	0.867	INTRON SKIP
3R	21289246	3R_21289246_SNP [dm3] 3R_25463524_SNP [dm6]	G	A	9.715e^-5	0.867	INTRON Fur1
2R	266292	2R_266292_SNP [dm3] 2R_4378787_SNP [dm6]	T	C	9.793e^-5	0.867	NON_SYNONYMOUS_CODING Gprk1
3L	19049372	3L_19049372_SNP [dm3] 3L_19056272_SNP [dm6]	A	T	9.793e^-5	0.867	INTERGENIC
3L	19049373	3L_19049373_SNP [dm3] 3L_19056273_SNP [dm6]	C	G	9.793e^-5	0.867	INTERGENIC
3L	19049376	3L_19049376_DEL [dm3] 3L_19056276_DEL [dm6]	ATC	A	9.793e^-5	0.867	INTERGENIC
3L	19049380	3L_19049380_INS [dm3] 3L_19056280_INS [dm6]	A	ACTTGC	9.793e^-5	0.867	INTERGENIC
3L	10134679	3L_10134679_SNP [dm3] 3L_10141579_SNP [dm6]	G	T	1.021e^-4	0.867	INTERGENIC
2L	16541881	2L_16541881_SNP [dm3] 2L_16541881_SNP [dm6]	T	G	1.040e^-4	0.867	UPSTREAM CG31816 INTERGENIC
2L	16541885	2L_16541885_SNP [dm3] 2L_16541885_SNP [dm6]	A	T	1.040e^-4	0.867	UPSTREAM CG31816 INTERGENIC
2R	198036	2R_198036_SNP [dm3] 2R_4310531_SNP [dm6]	T	A	1.044e^-4	0.867	INTERGENIC
3L	10134684	3L_10134684_SNP [dm3] 3L_10141584_SNP [dm6]	G	T	1.048e^-4	0.867	INTERGENIC
3L	14105388	3L_14105388_DEL [dm3] 3L_14112288_DEL [dm6]	AT	C	1.048e^-4	0.867	DOWNSTREAM Sox21b INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	6736381	3R_6736381_SNP [dm3] 3R_10910659_SNP [dm6]	T	C	1.068e^-4	0.867	INTERGENIC
2L	13966015	2L_13966015_SNP [dm3] 2L_13966015_SNP [dm6]	G	A	1.078e^-4	0.867	SPLICE_SITE_REGION NimB2 DOWNSTREAM NimB1 INTRON NimB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13966017	2L_13966017_SNP [dm3] 2L_13966017_SNP [dm6]	T	A	1.078e^-4	0.867	SPLICE_SITE_REGION NimB2 DOWNSTREAM NimB1 INTRON NimB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13966021	2L_13966021_SNP [dm3] 2L_13966021_SNP [dm6]	A	C	1.078e^-4	0.867	DOWNSTREAM NimB1 INTRON NimB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9264818	2R_9264818_SNP [dm3] 2R_13377313_SNP [dm6]	C	T	1.091e^-4	0.867	NON_SYNONYMOUS_CODING CG10814	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1005288	3L_1005288_SNP [dm3] 3L_1005288_SNP [dm6]	C	A	1.157e^-4	0.867	INTRON trio
3L	8672802	3L_8672802_SNP [dm3] 3L_8679702_SNP [dm6]	A	T	1.159e^-4	0.867	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
X	20467213	X_20467213_SNP [dm3] X_20596186_SNP [dm6]	T	G	1.211e^-4	0.867	INTRON RunxA
2L	13966035	2L_13966035_SNP [dm3] 2L_13966035_SNP [dm6]	T	G	1.228e^-4	0.867	DOWNSTREAM NimB1 INTRON NimB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11524104	3L_11524104_SNP [dm3] 3L_11531004_SNP [dm6]	T	C	1.271e^-4	0.867	INTRON Mob2
X	17152811	X_17152811_SNP [dm3] X_17258778_SNP [dm6]	A	C	1.276e^-4	0.867	UPSTREAM f INTRON f	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13932432	2R_13932432_SNP [dm3] 2R_18044927_SNP [dm6]	T	G	1.280e^-4	0.867	NON_SYNONYMOUS_CODING CG5770
2L	13423840	2L_13423840_SNP [dm3] 2L_13423840_SNP [dm6]	T	A	1.313e^-4	0.867	INTRON CG42784
2L	13423856	2L_13423856_SNP [dm3] 2L_13423856_SNP [dm6]	G	C	1.313e^-4	0.867	INTRON CG42784
2L	13423901	2L_13423901_SNP [dm3] 2L_13423901_SNP [dm6]	T	C	1.313e^-4	0.867	INTRON CG42784
2L	13931640	2L_13931640_SNP [dm3] 2L_13931640_SNP [dm6]	A	T	1.313e^-4	0.867	UPSTREAM CG42711 DOWNSTREAM CG16885 INTRON Ance-3
3L	7713969	3L_7713969_SNP [dm3] 3L_7720869_SNP [dm6]	A	G	1.317e^-4	0.867	SYNONYMOUS_CODING CG12262 DOWNSTREAM CG7457 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	7087491	3L_7087491_SNP [dm3] 3L_7094391_SNP [dm6]	C	T	1.328e^-4	0.867	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
4	1114303	4_1114303_SNP [dm3] 4_1093677_SNP [dm6]	T	A	1.344e^-4	0.867	INTRON sv	transposable element FlyBase
2R	121910	2R_121910_SNP [dm3] 2R_4234405_SNP [dm6]	G	A	1.361e^-4	0.867	INTERGENIC
X	12496619	X_12496619_SNP [dm3] X_12602586_SNP [dm6]	T	A	1.372e^-4	0.867	INTRON Sec16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	8656919	2R_8656919_INS [dm3] 2R_12769414_INS [dm6]	G	GTATTGGGTATTGCACAATA...	1.375e^-4	0.867	INTERGENIC	regulatory region REDfly_CRMs
2R	200511	2R_200511_DEL [dm3] 2R_4313006_DEL [dm6]	TATTAAAGACGTAGGTTGCA...	T	1.391e^-4	0.867	INTERGENIC
2R	294699	2R_294699_SNP [dm3] 2R_4407194_SNP [dm6]	G	T	1.391e^-4	0.867	INTRON Gprk1	TF binding site mE1_TFBS_sens
3L	8877918	3L_8877918_SNP [dm3] 3L_8884818_SNP [dm6]	T	G	1.451e^-4	0.867	INTRON dally
3R	25356383	3R_25356383_SNP [dm3] 3R_29530661_SNP [dm6]	G	A	1.451e^-4	0.867	INTERGENIC
3R	25356405	3R_25356405_SNP [dm3] 3R_29530683_SNP [dm6]	T	C	1.451e^-4	0.867	INTERGENIC
3R	25356416	3R_25356416_SNP [dm3] 3R_29530694_SNP [dm6]	G	T	1.451e^-4	0.867	INTERGENIC
3R	25356432	3R_25356432_SNP [dm3] 3R_29530710_SNP [dm6]	A	T	1.451e^-4	0.867	INTERGENIC
3L	11525951	3L_11525951_SNP [dm3] 3L_11532851_SNP [dm6]	A	G	1.468e^-4	0.867	INTRON Mob2
3L	7592091	3L_7592091_SNP [dm3] 3L_7598991_SNP [dm6]	A	T	1.468e^-4	0.867	INTRON CG33275	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5181590	X_5181590_SNP [dm3] X_5287557_SNP [dm6]	T	A	1.468e^-4	0.867	INTERGENIC
3L	10797235	3L_10797235_SNP [dm3] 3L_10804135_SNP [dm6]	C	A	1.505e^-4	0.867	EXON CR44347
3L	10797257	3L_10797257_SNP [dm3] 3L_10804157_SNP [dm6]	C	T	1.505e^-4	0.867	EXON CR44347
2R	1664612	2R_1664612_DEL [dm3] 2R_5777107_DEL [dm6]	ATAGAAGTTAGA...	A	1.508e^-4	0.867	INTRON ZnT41F
3R	21289244	3R_21289244_SNP [dm3] 3R_25463522_SNP [dm6]	G	T	1.554e^-4	0.867	INTRON Fur1
3L	7087524	3L_7087524_SNP [dm3] 3L_7094424_SNP [dm6]	T	C	1.567e^-4	0.867	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
2L	12401780	2L_12401780_SNP [dm3] 2L_12401780_SNP [dm6]	C	A	1.589e^-4	0.867	UTR_3_PRIME Pkd2
3L	19048628	3L_19048628_SNP [dm3] 3L_19055528_SNP [dm6]	A	T	1.589e^-4	0.867	INTERGENIC
3R	17696389	3R_17696389_SNP [dm3] 3R_21870667_SNP [dm6]	A	G	1.632e^-4	0.867	UPSTREAM CG31431 INTERGENIC
3R	22794069	3R_22794069_SNP [dm3] 3R_26968347_SNP [dm6]	C	A	1.632e^-4	0.867	INTRON CG5521
3R	22794071	3R_22794071_SNP [dm3] 3R_26968349_SNP [dm6]	C	A	1.632e^-4	0.867	INTRON CG5521
3R	22794078	3R_22794078_SNP [dm3] 3R_26968356_SNP [dm6]	C	A	1.632e^-4	0.867	INTRON CG5521
2L	6248985	2L_6248985_SNP [dm3] 2L_6248985_SNP [dm6]	T	A	1.648e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	16008561	3L_16008561_SNP [dm3] 3L_16015461_SNP [dm6]	G	C	1.653e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_Trl
3L	11699781	3L_11699781_SNP [dm3] 3L_11706681_SNP [dm6]	C	T	1.705e^-4	0.867	INTRON CG11658
2R	1170993	2R_1170993_SNP [dm3] 2R_5283488_SNP [dm6]	A	G	1.720e^-4	0.867	INTRON d4
2L	17133981	2L_17133981_SNP [dm3] 2L_17133981_SNP [dm6]	T	G	1.720e^-4	0.867	INTRON beat-IIIa & 1 other
2R	177272	2R_177272_DEL [dm3] 2R_4289767_DEL [dm6]	CTA	C	1.723e^-4	0.867	INTERGENIC
3L	7087537	3L_7087537_SNP [dm3] 3L_7094437_SNP [dm6]	T	C	1.738e^-4	0.867	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
2L	20815058	2L_20815058_SNP [dm3] 2L_20815058_SNP [dm6]	T	C	1.742e^-4	0.867	SYNONYMOUS_CODING CG33322 DOWNSTREAM CG9328	TF binding site mE1_TFBS_sens
2R	20257923	2R_20257923_SNP [dm3] 2R_24370400_SNP [dm6]	G	A	1.742e^-4	0.867	UPSTREAM CR44811 INTRON bs	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	235586	2R_235586_SNP [dm3] 2R_4348081_SNP [dm6]	A	G	1.775e^-4	0.867	INTRON Gprk1
3L	19057906	3L_19057906_SNP [dm3] 3L_19064806_SNP [dm6]	A	C	1.775e^-4	0.867	INTRON CG6812	TF binding site mE1_TFBS_sens
3L	1288098	3L_1288098_SNP [dm3] 3L_1288098_SNP [dm6]	C	A	1.804e^-4	0.867	SYNONYMOUS_CODING CG32333
2R	1636707	2R_1636707_SNP [dm3] 2R_5749202_SNP [dm6]	C	G	1.833e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10454573	3L_10454573_SNP [dm3] 3L_10461473_SNP [dm6]	C	T	1.833e^-4	0.867	NON_SYNONYMOUS_CODING Gem3
3L	10454582	3L_10454582_SNP [dm3] 3L_10461482_SNP [dm6]	T	G	1.833e^-4	0.867	NON_SYNONYMOUS_CODING Gem3
3L	3501120	3L_3501120_SNP [dm3] 3L_3501120_SNP [dm6]	C	T	1.834e^-4	0.867	INTRON CG42324
X	6013186	X_6013186_SNP [dm3] X_6119153_SNP [dm6]	A	T	1.851e^-4	0.867	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6013360	X_6013360_SNP [dm3] X_6119327_SNP [dm6]	T	A	1.851e^-4	0.867	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl
2L	7068659	2L_7068659_SNP [dm3] 2L_7068659_SNP [dm6]	G	C	1.860e^-4	0.867	DOWNSTREAM Pvf2 INTRON CG11289	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16965872	2R_16965872_SNP [dm3] 2R_21078367_SNP [dm6]	A	T	1.884e^-4	0.867	INTRON Treh
3L	14060881	3L_14060881_SNP [dm3] 3L_14067781_SNP [dm6]	A	G	1.889e^-4	0.867	SYNONYMOUS_CODING CG32138
2L	16475605	2L_16475605_SNP [dm3] 2L_16475605_SNP [dm6]	T	A	1.893e^-4	0.867	INTRON dac	TF binding site BDTNP1_TFBS_dl
3L	10854727	3L_10854727_INS [dm3] 3L_10861627_INS [dm6]	A	ACATA	1.929e^-4	0.867	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12736402	3L_12736402_SNP [dm3] 3L_12743302_SNP [dm6]	G	C	1.929e^-4	0.867	INTRON CG32112
3L	8672898	3L_8672898_INS [dm3] 3L_8679798_INS [dm6]	T	TT	1.929e^-4	0.867	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	8672904	3L_8672904_SNP [dm3] 3L_8679804_SNP [dm6]	C	A	1.929e^-4	0.867	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	8672906	3L_8672906_SNP [dm3] 3L_8679806_SNP [dm6]	G	T	1.929e^-4	0.867	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	8672907	3L_8672907_SNP [dm3] 3L_8679807_SNP [dm6]	G	T	1.929e^-4	0.867	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	887704	3L_887704_SNP [dm3] 3L_887704_SNP [dm6]	A	G	1.929e^-4	0.867	UPSTREAM CG32479 INTRON CG32479
3L	5357606	3L_5357606_SNP [dm3] 3L_5364506_SNP [dm6]	C	A	1.978e^-4	0.867	INTRON Uev1A	TF binding site mE1_TFBS_inv
2R	12432587	2R_12432587_SNP [dm3] 2R_16545082_SNP [dm6]	A	G	1.998e^-4	0.867	INTERGENIC
2R	1729724	2R_1729724_SNP [dm3] 2R_5842219_SNP [dm6]	C	T	2.060e^-4	0.867	INTRON dpr12
2L	14534566	2L_14534566_SNP [dm3] 2L_14534566_SNP [dm6]	C	T	2.088e^-4	0.867	INTERGENIC
2R	10280036	2R_10280036_DEL [dm3] 2R_14392531_DEL [dm6]	AA	G	2.138e^-4	0.867	DOWNSTREAM CG10104 INTERGENIC
2L	13931627	2L_13931627_SNP [dm3] 2L_13931627_SNP [dm6]	A	T	2.140e^-4	0.867	UPSTREAM CG42711 DOWNSTREAM CG16885 INTRON Ance-3
2L	18119375	2L_18119375_SNP [dm3] 2L_18119375_SNP [dm6]	C	A	2.140e^-4	0.867	UPSTREAM CG5758 INTERGENIC
2L	18119472	2L_18119472_SNP [dm3] 2L_18119472_SNP [dm6]	A	T	2.140e^-4	0.867	UPSTREAM CG5758 INTERGENIC
2L	18119474	2L_18119474_SNP [dm3] 2L_18119474_SNP [dm6]	C	A	2.140e^-4	0.867	UPSTREAM CG5758 INTERGENIC
2L	18119476	2L_18119476_SNP [dm3] 2L_18119476_SNP [dm6]	T	A	2.140e^-4	0.867	UPSTREAM CG5758 INTERGENIC
2L	18119537	2L_18119537_SNP [dm3] 2L_18119537_SNP [dm6]	T	G	2.140e^-4	0.867	UPSTREAM CG5758 INTERGENIC
3L	8877873	3L_8877873_SNP [dm3] 3L_8884773_SNP [dm6]	A	G	2.164e^-4	0.867	INTRON dally
2L	13422679	2L_13422679_SNP [dm3] 2L_13422679_SNP [dm6]	T	C	2.183e^-4	0.867	INTRON CG42784
2L	14206166	2L_14206166_SNP [dm3] 2L_14206166_SNP [dm6]	A	T	2.183e^-4	0.867	INTRON Dyrk2
3L	17682707	3L_17682707_SNP [dm3] 3L_17689607_SNP [dm6]	T	C	2.200e^-4	0.867	UPSTREAM Ccn INTERGENIC
3L	7965856	3L_7965856_SNP [dm3] 3L_7972756_SNP [dm6]	T	C	2.200e^-4	0.867	SYNONYMOUS_CODING CG8042 DOWNSTREAM RNaseX25
3R	22291521	3R_22291521_SNP [dm3] 3R_26465799_SNP [dm6]	C	T	2.216e^-4	0.867	INTRON CG5455
2R	5943393	2R_5943393_SNP [dm3] 2R_10055888_SNP [dm6]	A	G	2.262e^-4	0.867	UPSTREAM magu INTRON magu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	13486011	3R_13486011_DEL [dm3] 3R_17660289_DEL [dm6]	AAA	A	2.340e^-4	0.867	INTRON CG14322
3L	21776478	3L_21776478_SNP [dm3] 3L_21783378_SNP [dm6]	C	A	2.343e^-4	0.867	INTERGENIC
2R	9264904	2R_9264904_SNP [dm3] 2R_13377399_SNP [dm6]	G	A	2.355e^-4	0.867	NON_SYNONYMOUS_CODING CG10814	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10278162	2R_10278162_SNP [dm3] 2R_14390657_SNP [dm6]	A	G	2.377e^-4	0.867	UPSTREAM CG10104 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10278166	2R_10278166_SNP [dm3] 2R_14390661_SNP [dm6]	G	A	2.377e^-4	0.867	UPSTREAM CG10104 INTERGENIC	TF binding site mE1_TFBS_cad
2R	174991	2R_174991_SNP [dm3] 2R_4287486_SNP [dm6]	T	C	2.377e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_inv
2R	187665	2R_187665_SNP [dm3] 2R_4300160_SNP [dm6]	A	C	2.377e^-4	0.867	INTERGENIC
2R	18882990	2R_18882990_SNP [dm3] 2R_22995467_SNP [dm6]	A	G	2.377e^-4	0.867	SYNONYMOUS_CODING CG9896 INTRON twi
2R	208741	2R_208741_SNP [dm3] 2R_4321236_SNP [dm6]	G	A	2.377e^-4	0.867	INTERGENIC
2L	18119543	2L_18119543_SNP [dm3] 2L_18119543_SNP [dm6]	T	C	2.404e^-4	0.867	UPSTREAM CG5758 INTERGENIC
2L	18119547	2L_18119547_SNP [dm3] 2L_18119547_SNP [dm6]	A	C	2.404e^-4	0.867	UPSTREAM CG5758 INTERGENIC
3L	1440761	3L_1440761_SNP [dm3] 3L_1440761_SNP [dm6]	C	T	2.431e^-4	0.867	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
3R	2836515	3R_2836515_SNP [dm3] 3R_7010793_SNP [dm6]	C	A	2.431e^-4	0.867	INTERGENIC
3R	5498926	3R_5498926_SNP [dm3] 3R_9673204_SNP [dm6]	G	A	2.431e^-4	0.867	INTRON CG9492
X	16085263	X_16085263_SNP [dm3] X_16191230_SNP [dm6]	A	G	2.433e^-4	0.867	DOWNSTREAM mir-985 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19494998	2R_19494998_SNP [dm3] 2R_23607475_SNP [dm6]	A	G	2.443e^-4	0.867	UPSTREAM CG17662 DOWNSTREAM CG4019 INTRON CG17664
2R	19495007	2R_19495007_SNP [dm3] 2R_23607484_SNP [dm6]	A	C	2.443e^-4	0.867	UPSTREAM CG17662 DOWNSTREAM CG4019 INTRON CG17664
3L	12655820	3L_12655820_SNP [dm3] 3L_12662720_SNP [dm6]	A	G	2.443e^-4	0.867	DOWNSTREAM CR44552 INTERGENIC
3R	15662386	3R_15662386_SNP [dm3] 3R_19836664_SNP [dm6]	T	A	2.443e^-4	0.867	UTR_5_PRIME bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	2546618	3R_2546618_SNP [dm3] 3R_6720896_SNP [dm6]	T	C	2.443e^-4	0.867	INTRON pb	regulatory region REDfly_CRMs
3R	2546682	3R_2546682_SNP [dm3] 3R_6720960_SNP [dm6]	A	G	2.458e^-4	0.867	INTRON pb	regulatory region REDfly_CRMs
2L	15223055	2L_15223055_DEL [dm3] 2L_15223055_DEL [dm6]	ACA	A	2.482e^-4	0.867	INTERGENIC
2L	22733659	2L_22733659_SNP [dm3] 2L_22840927_SNP [dm6]	A	T	2.502e^-4	0.867	INTERGENIC
2R	13826237	2R_13826237_SNP [dm3] 2R_17938732_SNP [dm6]	C	T	2.502e^-4	0.867	INTERGENIC
2R	7958961	2R_7958961_SNP [dm3] 2R_12071456_SNP [dm6]	A	C	2.502e^-4	0.867	INTRON CG8888
2R	9566904	2R_9566904_SNP [dm3] 2R_13679399_SNP [dm6]	T	C	2.502e^-4	0.867	INTRON fas
2R	9667295	2R_9667295_SNP [dm3] 2R_13779790_SNP [dm6]	G	C	2.502e^-4	0.867	SYNONYMOUS_CODING S-Lap7 INTRON Cpr50Ca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	9667310	2R_9667310_SNP [dm3] 2R_13779805_SNP [dm6]	G	A	2.502e^-4	0.867	SYNONYMOUS_CODING S-Lap7 INTRON Cpr50Ca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	1262361	3L_1262361_DEL [dm3] 3L_1262361_DEL [dm6]	GTG	G	2.502e^-4	0.867	INTRON CG9134
3L	13005868	3L_13005868_SNP [dm3] 3L_13012768_SNP [dm6]	C	G	2.502e^-4	0.867	SYNONYMOUS_CODING MICAL-like	TF binding site mE1_TFBS_sens
3L	18080501	3L_18080501_SNP [dm3] 3L_18087401_SNP [dm6]	T	C	2.502e^-4	0.867	UPSTREAM CR32194 & 1 other INTERGENIC
3L	2983978	3L_2983978_SNP [dm3] 3L_2983978_SNP [dm6]	A	G	2.502e^-4	0.867	DOWNSTREAM CG2107 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3044413	3L_3044413_SNP [dm3] 3L_3044413_SNP [dm6]	A	C	2.502e^-4	0.867	UTR_3_PRIME scramb2 DOWNSTREAM Jafrac2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	7223902	3L_7223902_INS [dm3] 3L_7230802_INS [dm6]	G	GA	2.502e^-4	0.867	INTERGENIC
3L	854251	3L_854251_DEL [dm3] 3L_854251_DEL [dm6]	TTCAATTCGAT...	T	2.502e^-4	0.867	INTRON dpr20
3R	19908036	3R_19908036_SNP [dm3] 3R_24082314_SNP [dm6]	A	G	2.523e^-4	0.867	INTRON 4EHP
2L	10435610	2L_10435610_INS [dm3] 2L_10435610_INS [dm6]	C	CC	2.531e^-4	0.867	UTR_5_PRIME CG5337 UPSTREAM holn1
2R	15254181	2R_15254181_SNP [dm3] 2R_19366676_SNP [dm6]	T	C	2.561e^-4	0.867	SYNONYMOUS_CODING CG10051 DOWNSTREAM CG9416
3L	13228911	3L_13228911_SNP [dm3] 3L_13235811_SNP [dm6]	T	A	2.564e^-4	0.867	INTRON caps
3L	7087635	3L_7087635_SNP [dm3] 3L_7094535_SNP [dm6]	A	C	2.569e^-4	0.867	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	insulator Insulator_Class_I.mE01
X	6412982	X_6412982_SNP [dm3] X_6518949_SNP [dm6]	A	G	2.616e^-4	0.867	INTRON CG42340
2L	10755237	2L_10755237_SNP [dm3] 2L_10755237_SNP [dm6]	A	G	2.646e^-4	0.867	INTRON CG17124
2L	16447489	2L_16447489_SNP [dm3] 2L_16447489_SNP [dm6]	G	A	2.646e^-4	0.867	SYNONYMOUS_CODING Idgf2 UTR_5_PRIME Idgf2 DOWNSTREAM Idgf1 INTRON CG5888
2L	16608263	2L_16608263_SNP [dm3] 2L_16608263_SNP [dm6]	G	A	2.646e^-4	0.867	SYNONYMOUS_CODING CG4631 DOWNSTREAM CG31815 INTRON CG42389	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5657097	2R_5657097_SNP [dm3] 2R_9769592_SNP [dm6]	C	A	2.646e^-4	0.867	INTRON CG1688	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	18361014	2L_18361014_SNP [dm3] 2L_18361014_SNP [dm6]	C	T	2.658e^-4	0.867	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18361025	2L_18361025_SNP [dm3] 2L_18361025_SNP [dm6]	C	T	2.658e^-4	0.867	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18361026	2L_18361026_SNP [dm3] 2L_18361026_SNP [dm6]	C	T	2.658e^-4	0.867	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13941531	2L_13941531_INS [dm3] 2L_13941531_INS [dm6]	A	AT	2.662e^-4	0.867	INTRON Ance-3
2R	10835104	2R_10835104_SNP [dm3] 2R_14947599_SNP [dm6]	G	A	2.731e^-4	0.867	INTRON aPKC
3L	16789805	3L_16789805_SNP [dm3] 3L_16796705_SNP [dm6]	T	A	2.731e^-4	0.867	INTRON CG9674
2R	1153907	2R_1153907_SNP [dm3] 2R_5266402_SNP [dm6]	C	G	2.774e^-4	0.867	INTRON d4
3L	7087611	3L_7087611_SNP [dm3] 3L_7094511_SNP [dm6]	G	A	2.775e^-4	0.867	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
2R	18105636	2R_18105636_SNP [dm3] 2R_22218131_SNP [dm6]	G	A	2.801e^-4	0.867	SYNONYMOUS_CODING CG30278 DOWNSTREAM ari-2 & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_chinmo
3R	3958435	3R_3958435_SNP [dm3] 3R_8132713_SNP [dm6]	A	G	2.801e^-4	0.867	INTERGENIC
3R	3958436	3R_3958436_SNP [dm3] 3R_8132714_SNP [dm6]	A	G	2.801e^-4	0.867	INTERGENIC
3R	19447614	3R_19447614_SNP [dm3] 3R_23621892_SNP [dm6]	C	T	2.802e^-4	0.867	INTRON CG31145
2R	7903726	2R_7903726_SNP [dm3] 2R_12016221_SNP [dm6]	C	T	2.816e^-4	0.867	DOWNSTREAM CR44306 INTRON otk	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
2R	7903742	2R_7903742_SNP [dm3] 2R_12016237_SNP [dm6]	T	G	2.816e^-4	0.867	DOWNSTREAM CR44306 INTRON otk	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
2L	17319847	2L_17319847_SNP [dm3] 2L_17319847_SNP [dm6]	G	C	2.838e^-4	0.867	UPSTREAM CR45696 DOWNSTREAM CG45691 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sbb
2R	216506	2R_216506_SNP [dm3] 2R_4329001_SNP [dm6]	A	G	2.936e^-4	0.867	INTRON Gprk1
2R	433677	2R_433677_SNP [dm3] 2R_4546172_SNP [dm6]	C	G	2.943e^-4	0.867	UPSTREAM Stlk INTERGENIC
2R	436873	2R_436873_SNP [dm3] 2R_4549368_SNP [dm6]	C	T	2.943e^-4	0.867	INTRON Stlk	transposable element FlyBase
2R	12293435	2R_12293435_SNP [dm3] 2R_16405930_SNP [dm6]	G	A	2.949e^-4	0.867	INTRON Sema-2b
2L	15218909	2L_15218909_SNP [dm3] 2L_15218909_SNP [dm6]	C	T	2.954e^-4	0.867	INTERGENIC
2L	19478627	2L_19478627_SNP [dm3] 2L_19478627_SNP [dm6]	T	A	2.954e^-4	0.867	INTERGENIC
2R	5189545	2R_5189545_SNP [dm3] 2R_9302040_SNP [dm6]	A	T	2.954e^-4	0.867	UTR_3_PRIME Drep-2 DOWNSTREAM Myd88
X	13439489	X_13439489_SNP [dm3] X_13545456_SNP [dm6]	T	C	2.984e^-4	0.867	DOWNSTREAM Cpr12A INTERGENIC
3R	11317276	3R_11317276_SNP [dm3] 3R_15491554_SNP [dm6]	C	T	3.008e^-4	0.867	SYNONYMOUS_CODING CG5205	TF binding site mE1_TFBS_cad
2R	16380886	2R_16380886_SNP [dm3] 2R_20493381_SNP [dm6]	T	A	3.019e^-4	0.867	INTERGENIC
2R	7903471	2R_7903471_SNP [dm3] 2R_12015966_SNP [dm6]	A	T	3.019e^-4	0.867	DOWNSTREAM CR44306 INTRON otk	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_cnc
3L	5388270	3L_5388270_SNP [dm3] 3L_5395170_SNP [dm6]	G	A	3.019e^-4	0.867	INTERGENIC
3R	27102517	3R_27102517_SNP [dm3] 3R_31276795_SNP [dm6]	T	C	3.022e^-4	0.867	INTERGENIC
X	22066517	X_22066517_SNP [dm3] X_22664681_SNP [dm6]	T	C	3.022e^-4	0.867	INTRON CR44997
X	22067250	X_22067250_SNP [dm3] X_22665414_SNP [dm6]	A	G	3.022e^-4	0.867	INTRON CR44997
2L	6449908	2L_6449908_SNP [dm3] 2L_6449908_SNP [dm6]	G	A	3.033e^-4	0.867	SYNONYMOUS_CODING retm
2R	2444266	2R_2444266_SNP [dm3] 2R_6556761_SNP [dm6]	C	T	3.091e^-4	0.867	INTRON jing
2L	21771562	2L_21771562_SNP [dm3] 2L_21771562_SNP [dm6]	A	T	3.113e^-4	0.867	INTRON CG31612
2L	13422402	2L_13422402_SNP [dm3] 2L_13422402_SNP [dm6]	C	T	3.154e^-4	0.867	INTRON CG42784
2L	13422447	2L_13422447_SNP [dm3] 2L_13422447_SNP [dm6]	C	G	3.154e^-4	0.867	INTRON CG42784
2L	13422448	2L_13422448_DEL [dm3] 2L_13422448_DEL [dm6]	TATTAGACAGACTGACAAGC...	T	3.154e^-4	0.867	INTRON CG42784
2L	13422482	2L_13422482_SNP [dm3] 2L_13422482_SNP [dm6]	T	A	3.154e^-4	0.867	INTRON CG42784
2L	13422483	2L_13422483_SNP [dm3] 2L_13422483_SNP [dm6]	A	T	3.154e^-4	0.867	INTRON CG42784
2L	7239309	2L_7239309_SNP [dm3] 2L_7239309_SNP [dm6]	A	G	3.154e^-4	0.867	INTRON Ndae1
2R	17323807	2R_17323807_SNP [dm3] 2R_21436302_SNP [dm6]	G	C	3.195e^-4	0.867	INTRON Sdc
3L	15736994	3L_15736994_SNP [dm3] 3L_15743894_SNP [dm6]	T	C	3.195e^-4	0.867	INTERGENIC
3L	15737000	3L_15737000_INS [dm3] 3L_15743900_INS [dm6]	T	TGGAAGT	3.195e^-4	0.867	INTERGENIC
3L	15737016	3L_15737016_SNP [dm3] 3L_15743916_SNP [dm6]	A	G	3.195e^-4	0.867	INTERGENIC
3L	15737018	3L_15737018_SNP [dm3] 3L_15743918_SNP [dm6]	T	C	3.195e^-4	0.867	INTERGENIC
3L	15737022	3L_15737022_SNP [dm3] 3L_15743922_SNP [dm6]	G	C	3.195e^-4	0.867	INTERGENIC
3L	18850143	3L_18850143_SNP [dm3] 3L_18857043_SNP [dm6]	G	A	3.195e^-4	0.867	EXON CR45388
3L	18850178	3L_18850178_SNP [dm3] 3L_18857078_SNP [dm6]	C	T	3.195e^-4	0.867	EXON CR45388
3L	8672931	3L_8672931_SNP [dm3] 3L_8679831_SNP [dm6]	G	T	3.221e^-4	0.867	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	6320874	2L_6320874_SNP [dm3] 2L_6320874_SNP [dm6]	A	G	3.240e^-4	0.867	INTRON Ddr
2L	16541879	2L_16541879_SNP [dm3] 2L_16541879_SNP [dm6]	G	A	3.242e^-4	0.867	UPSTREAM CG31816 INTERGENIC
2R	118539	2R_118539_SNP [dm3] 2R_4231034_SNP [dm6]	A	T	3.275e^-4	0.867	INTERGENIC
2R	131824	2R_131824_SNP [dm3] 2R_4244319_SNP [dm6]	A	C	3.275e^-4	0.867	INTERGENIC
2R	132654	2R_132654_SNP [dm3] 2R_4245149_SNP [dm6]	A	C	3.275e^-4	0.867	INTERGENIC
2R	173025	2R_173025_SNP [dm3] 2R_4285520_SNP [dm6]	C	T	3.275e^-4	0.867	INTERGENIC
2R	85901	2R_85901_SNP [dm3] 2R_4198396_SNP [dm6]	A	G	3.275e^-4	0.867	INTERGENIC
2R	91631	2R_91631_DEL [dm3] 2R_4204126_DEL [dm6]	AATCCAATCCGAACGCTTAG...	T	3.275e^-4	0.867	INTERGENIC
X	4071619	X_4071619_SNP [dm3] X_4177586_SNP [dm6]	C	T	3.275e^-4	0.867	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4071708	X_4071708_DEL [dm3] X_4177675_DEL [dm6]	GTTTTCTGCGCCTTTTG...	G	3.275e^-4	0.867	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4071792	X_4071792_SNP [dm3] X_4177759_SNP [dm6]	T	A	3.275e^-4	0.867	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18096979	3L_18096979_SNP [dm3] 3L_18103879_SNP [dm6]	A	T	3.283e^-4	0.867	INTRON CG13698
3L	4699950	3L_4699950_SNP [dm3] 3L_4699950_SNP [dm6]	C	A	3.283e^-4	0.867	INTRON RhoGEF64C
2R	16354471	2R_16354471_DEL [dm3] 2R_20466966_DEL [dm6]	CACGCGATTC	C	3.309e^-4	0.867	INTRON CG12484
3L	134156	3L_134156_DEL [dm3] 3L_134156_DEL [dm6]	ATTGTA	A	3.309e^-4	0.867	INTRON Pdk1
3R	20195736	3R_20195736_SNP [dm3] 3R_24370014_SNP [dm6]	C	T	3.309e^-4	0.867	SYNONYMOUS_CODING CG13614 DOWNSTREAM CG33341 & 1 other
3R	7608806	3R_7608806_SNP [dm3] 3R_11783084_SNP [dm6]	C	T	3.309e^-4	0.867	NON_SYNONYMOUS_CODING CG17360
2L	15177549	2L_15177549_SNP [dm3] 2L_15177549_SNP [dm6]	C	T	3.309e^-4	0.867	INTRON CG4168
2L	2180453	2L_2180453_SNP [dm3] 2L_2180453_SNP [dm6]	T	G	3.309e^-4	0.867	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7903731	2R_7903731_DEL [dm3] 2R_12016226_DEL [dm6]	GATTCTT	AGGTTA	3.327e^-4	0.867	DOWNSTREAM CR44306 INTRON otk	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
2R	12144870	2R_12144870_SNP [dm3] 2R_16257365_SNP [dm6]	T	C	3.327e^-4	0.867	INTRON CngA
2R	15254127	2R_15254127_SNP [dm3] 2R_19366622_SNP [dm6]	A	G	3.336e^-4	0.867	SYNONYMOUS_CODING CG10051 DOWNSTREAM CG9416
2R	15254136	2R_15254136_SNP [dm3] 2R_19366631_SNP [dm6]	G	A	3.336e^-4	0.867	SYNONYMOUS_CODING CG10051 DOWNSTREAM CG9416
3L	12736285	3L_12736285_DEL [dm3] 3L_12743185_DEL [dm6]	GAG	G	3.336e^-4	0.867	INTRON CG32112
3L	21776480	3L_21776480_SNP [dm3] 3L_21783380_SNP [dm6]	A	G	3.353e^-4	0.867	INTERGENIC
2R	11301821	2R_11301821_SNP [dm3] 2R_15414316_SNP [dm6]	A	G	3.360e^-4	0.867	INTRON CG43729
2R	12432555	2R_12432555_SNP [dm3] 2R_16545050_SNP [dm6]	G	A	3.403e^-4	0.867	INTERGENIC
2R	12432575	2R_12432575_SNP [dm3] 2R_16545070_SNP [dm6]	T	C	3.403e^-4	0.867	INTERGENIC
2R	12432577	2R_12432577_SNP [dm3] 2R_16545072_SNP [dm6]	A	C	3.403e^-4	0.867	INTERGENIC
3L	9263079	3L_9263079_SNP [dm3] 3L_9269979_SNP [dm6]	T	C	3.463e^-4	0.867	INTRON GluRIB
3L	9263127	3L_9263127_SNP [dm3] 3L_9270027_SNP [dm6]	C	T	3.463e^-4	0.867	INTRON GluRIB
3L	9263138	3L_9263138_SNP [dm3] 3L_9270038_SNP [dm6]	G	A	3.463e^-4	0.867	INTRON GluRIB
X	919599	X_919599_SNP [dm3] X_1025566_SNP [dm6]	A	G	3.465e^-4	0.867	INTRON su_w[a]_ & 2 others	transposable element FlyBase
3L	5357590	3L_5357590_SNP [dm3] 3L_5364490_SNP [dm6]	T	C	3.488e^-4	0.867	INTRON Uev1A	TF binding site mE1_TFBS_inv
3L	8672619	3L_8672619_SNP [dm3] 3L_8679519_SNP [dm6]	T	G	3.488e^-4	0.867	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs
3R	19049810	3R_19049810_SNP [dm3] 3R_23224088_SNP [dm6]	A	T	3.490e^-4	0.867	INTRON cnc
2R	492107	2R_492107_DEL [dm3] 2R_4604602_DEL [dm6]	CACTTTATAATTAAGTTGAT...	C	3.580e^-4	0.867	INTRON p120ctn
2R	11398963	2R_11398963_SNP [dm3] 2R_15511458_SNP [dm6]	T	A	3.619e^-4	0.867	UPSTREAM GalNAc-T1 INTERGENIC
2L	13419413	2L_13419413_SNP [dm3] 2L_13419413_SNP [dm6]	T	C	3.639e^-4	0.867	UTR_5_PRIME CG43850 INTRON CG43850 & 1 other
2L	13425715	2L_13425715_SNP [dm3] 2L_13425715_SNP [dm6]	G	A	3.639e^-4	0.867	INTRON CG42784
2R	5048337	2R_5048337_SNP [dm3] 2R_9160832_SNP [dm6]	G	A	3.639e^-4	0.867	UTR_5_PRIME CG8008 UPSTREAM CR44283 INTRON CG8008
2R	5048338	2R_5048338_SNP [dm3] 2R_9160833_SNP [dm6]	T	G	3.639e^-4	0.867	SPLICE_SITE_REGION CG8008 UTR_5_PRIME CG8008 UPSTREAM CR44283 INTRON CG8008
2R	50493	2R_50493_DEL [dm3] 2R_4162988_DEL [dm6]	TT	T	3.639e^-4	0.867	INTERGENIC
3L	11215294	3L_11215294_DEL [dm3] 3L_11222194_DEL [dm6]	CTC	C	3.699e^-4	0.867	INTRON CG42671
2L	15168444	2L_15168444_SNP [dm3] 2L_15168444_SNP [dm6]	A	G	3.705e^-4	0.867	INTRON CG4168
3L	10797219	3L_10797219_SNP [dm3] 3L_10804119_SNP [dm6]	T	A	3.706e^-4	0.867	EXON CR44347
3L	10797258	3L_10797258_DEL [dm3] 3L_10804158_DEL [dm6]	GTGTTAAGTTCA...	G	3.706e^-4	0.867	EXON CR44347
2L	13931713	2L_13931713_SNP [dm3] 2L_13931713_SNP [dm6]	G	C	3.722e^-4	0.867	UPSTREAM CG42711 DOWNSTREAM CG16885 INTRON Ance-3
2R	1639385	2R_1639385_SNP [dm3] 2R_5751880_SNP [dm6]	A	C	3.722e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_cad
3L	1005297	3L_1005297_SNP [dm3] 3L_1005297_SNP [dm6]	G	T	3.752e^-4	0.867	INTRON trio
2L	1281338	2L_1281338_SNP [dm3] 2L_1281338_SNP [dm6]	G	A	3.753e^-4	0.867	INTRON robo3
2R	6459490	2R_6459490_SNP [dm3] 2R_10571985_SNP [dm6]	T	C	3.756e^-4	0.867	INTRON psq
X	21850283	X_21850283_SNP [dm3] X_22448447_SNP [dm6]	C	A	3.756e^-4	0.867	DOWNSTREAM CG14621 INTRON CG14615
3L	3577505	3L_3577505_SNP [dm3] 3L_3577505_SNP [dm6]	T	A	3.771e^-4	0.867	INTRON Eip63E
3L	9677928	3L_9677928_SNP [dm3] 3L_9684828_SNP [dm6]	G	A	3.771e^-4	0.867	SYNONYMOUS_CODING CG6767 UPSTREAM CG16719	TF binding site mE1_TFBS_cad
2R	12993735	2R_12993735_INS [dm3] 2R_17106230_INS [dm6]	A	AA	3.778e^-4	0.867	INTRON CG30456	TF binding site mE1_TFBS_cad
2R	1661071	2R_1661071_SNP [dm3] 2R_5773566_SNP [dm6]	T	A	3.783e^-4	0.867	UTR_3_PRIME Gp210	TF binding site BDTNP1_TFBS_dl
2L	10419991	2L_10419991_SNP [dm3] 2L_10419991_SNP [dm6]	C	T	3.821e^-4	0.867	SPLICE_SITE_REGION RfC3 SYNONYMOUS_CODING RfC3 DOWNSTREAM Klp31E & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	6248870	2L_6248870_SNP [dm3] 2L_6248870_SNP [dm6]	T	C	3.836e^-4	0.867	INTERGENIC
3R	27102510	3R_27102510_SNP [dm3] 3R_31276788_SNP [dm6]	C	T	3.843e^-4	0.867	INTERGENIC
3R	25525191	3R_25525191_SNP [dm3] 3R_29699469_SNP [dm6]	C	T	3.886e^-4	0.867	INTERGENIC
3R	17159111	3R_17159111_SNP [dm3] 3R_21333389_SNP [dm6]	A	C	3.905e^-4	0.867	INTRON CG16791
2R	19332804	2R_19332804_SNP [dm3] 2R_23445281_SNP [dm6]	C	G	3.908e^-4	0.867	INTRON CG43795
3L	8672790	3L_8672790_SNP [dm3] 3L_8679690_SNP [dm6]	T	A	3.913e^-4	0.867	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	2488125	3R_2488125_SNP [dm3] 3R_6662403_SNP [dm6]	G	A	3.953e^-4	0.867	INTRON lab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13204886	3L_13204886_SNP [dm3] 3L_13211786_SNP [dm6]	A	G	3.969e^-4	0.867	UPSTREAM tRNA:CR32126 DOWNSTREAM tRNA:CR32129 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13542999	2L_13542999_SNP [dm3] 2L_13542999_SNP [dm6]	C	T	3.982e^-4	0.867	SYNONYMOUS_CODING CG16853 UPSTREAM CG9263 INTRON B4	TF binding site mE1_TFBS_sens
2R	20396147	2R_20396147_SNP [dm3] 2R_24508624_SNP [dm6]	C	T	3.987e^-4	0.867	DOWNSTREAM CG13581 & 1 other INTERGENIC
2R	391232	2R_391232_SNP [dm3] 2R_4503727_SNP [dm6]	G	C	4.075e^-4	0.867	INTERGENIC
2L	14249910	2L_14249910_INS [dm3] 2L_14249910_INS [dm6]	T	TGGGT	4.088e^-4	0.867	INTERGENIC
2L	17134483	2L_17134483_SNP [dm3] 2L_17134483_SNP [dm6]	A	G	4.090e^-4	0.867	INTRON beat-IIIa & 1 other
2R	10287772	2R_10287772_SNP [dm3] 2R_14400267_SNP [dm6]	T	G	4.109e^-4	0.867	INTERGENIC
2R	18091791	2R_18091791_SNP [dm3] 2R_22204286_SNP [dm6]	G	C	4.118e^-4	0.867	SYNONYMOUS_CODING CG3292	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6013044	X_6013044_SNP [dm3] X_6119011_SNP [dm6]	G	T	4.124e^-4	0.867	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4071729	X_4071729_SNP [dm3] X_4177696_SNP [dm6]	G	A	4.162e^-4	0.867	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14004441	2R_14004441_SNP [dm3] 2R_18116936_SNP [dm6]	C	T	4.163e^-4	0.867	DOWNSTREAM stau INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10894932	3L_10894932_SNP [dm3] 3L_10901832_SNP [dm6]	T	G	4.181e^-4	0.867	INTERGENIC
2L	16541891	2L_16541891_SNP [dm3] 2L_16541891_SNP [dm6]	T	C	4.186e^-4	0.867	UPSTREAM CG31816 INTERGENIC
2L	11880928	2L_11880928_SNP [dm3] 2L_11880928_SNP [dm6]	C	T	4.187e^-4	0.867	INTRON Pde1c	TF binding site mE1_TFBS_inv
3L	8672909	3L_8672909_DEL [dm3] 3L_8679809_DEL [dm6]	TAGCTCTGATTGCAATAAAT...	T	4.220e^-4	0.867	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
4	1022458	4_1022458_SNP [dm3] 4_1001832_SNP [dm6]	T	A	4.225e^-4	0.867	INTRON toy
3R	19926336	3R_19926336_SNP [dm3] 3R_24100614_SNP [dm6]	A	G	4.237e^-4	0.867	DOWNSTREAM Syx1A INTRON 4EHP
X	2292962	X_2292962_SNP [dm3] X_2398929_SNP [dm6]	A	G	4.262e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	11741032	2L_11741032_SNP [dm3] 2L_11741032_SNP [dm6]	T	A	4.269e^-4	0.867	INTRON Vha100-5	TF binding site mE1_TFBS_cad
2L	17603545	2L_17603545_SNP [dm3] 2L_17603545_SNP [dm6]	G	A	4.269e^-4	0.867	UTR_3_PRIME Sytalpha	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	17171133	X_17171133_SNP [dm3] X_17277100_SNP [dm6]	G	T	4.344e^-4	0.867	INTRON f
X	15087736	X_15087736_SNP [dm3] X_15193703_SNP [dm6]	G	A	4.362e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15087762	X_15087762_SNP [dm3] X_15193729_SNP [dm6]	C	A	4.362e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8539921	X_8539921_SNP [dm3] X_8645888_SNP [dm6]	A	G	4.362e^-4	0.867	INTRON oc
X	904262	X_904262_SNP [dm3] X_1010229_SNP [dm6]	A	T	4.362e^-4	0.867	DOWNSTREAM TfIIA-S-2 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	919077	X_919077_SNP [dm3] X_1025044_SNP [dm6]	A	G	4.362e^-4	0.867	INTRON su_w[a]_ & 2 others	transposable element FlyBase
X	919506	X_919506_SNP [dm3] X_1025473_SNP [dm6]	A	G	4.362e^-4	0.867	INTRON su_w[a]_ & 2 others	transposable element FlyBase
2R	7033086	2R_7033086_SNP [dm3] 2R_11145581_SNP [dm6]	A	C	4.366e^-4	0.867	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7904727	2R_7904727_SNP [dm3] 2R_12017222_SNP [dm6]	T	A	4.366e^-4	0.867	INTRON otk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	10978033	X_10978033_SNP [dm3] X_11084000_SNP [dm6]	A	G	4.366e^-4	0.867	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2673558	3R_2673558_SNP [dm3] 3R_6847836_SNP [dm6]	A	C	4.369e^-4	0.867	INTRON Scr	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	362765	2R_362765_SNP [dm3] 2R_4475260_SNP [dm6]	A	T	4.388e^-4	0.867	INTERGENIC
3L	2488888	3L_2488888_SNP [dm3] 3L_2488888_SNP [dm6]	A	T	4.430e^-4	0.867	SPLICE_SITE_REGION CG1146 UTR_5_PRIME CG1146 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	3962978	X_3962978_SNP [dm3] X_4068945_SNP [dm6]	G	T	4.430e^-4	0.867	INTERGENIC
3R	10670669	3R_10670669_SNP [dm3] 3R_14844947_SNP [dm6]	A	T	4.433e^-4	0.867	UPSTREAM CG3610 INTRON btsz
3L	1679206	3L_1679206_SNP [dm3] 3L_1679206_SNP [dm6]	C	A	4.437e^-4	0.867	INTRON CG7991
3L	6637565	3L_6637565_SNP [dm3] 3L_6644465_SNP [dm6]	A	T	4.457e^-4	0.867	INTERGENIC
3L	7223936	3L_7223936_SNP [dm3] 3L_7230836_SNP [dm6]	C	G	4.457e^-4	0.867	INTERGENIC
3L	7223937	3L_7223937_SNP [dm3] 3L_7230837_SNP [dm6]	T	C	4.457e^-4	0.867	INTERGENIC
3L	7223966	3L_7223966_SNP [dm3] 3L_7230866_SNP [dm6]	C	T	4.457e^-4	0.867	INTERGENIC
3L	8073296	3L_8073296_SNP [dm3] 3L_8080196_SNP [dm6]	T	C	4.457e^-4	0.867	INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	8073381	3L_8073381_SNP [dm3] 3L_8080281_SNP [dm6]	T	C	4.457e^-4	0.867	INTRON Ect4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	17247126	3R_17247126_SNP [dm3] 3R_21421404_SNP [dm6]	C	T	4.457e^-4	0.867	INTRON lbl	TF binding site mE1_TFBS_cad
3R	25318629	3R_25318629_SNP [dm3] 3R_29492907_SNP [dm6]	A	C	4.457e^-4	0.867	UPSTREAM Diedel INTRON CG2310	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_zfh1
3R	12781112	3R_12781112_SNP [dm3] 3R_16955390_SNP [dm6]	C	T	4.463e^-4	0.867	INTRON Abd-B	TF binding site mE1_TFBS_cad
2R	9572233	2R_9572233_SNP [dm3] 2R_13684728_SNP [dm6]	C	T	4.466e^-4	0.867	INTRON fas
2R	12316559	2R_12316559_SNP [dm3] 2R_16429054_SNP [dm6]	A	G	4.513e^-4	0.867	INTRON Sema-2b	TF binding site BDTNP1_TFBS_twi
2R	12316560	2R_12316560_SNP [dm3] 2R_16429055_SNP [dm6]	T	C	4.513e^-4	0.867	INTRON Sema-2b	TF binding site BDTNP1_TFBS_twi
2R	1739164	2R_1739164_SNP [dm3] 2R_5851659_SNP [dm6]	C	T	4.533e^-4	0.867	INTRON dpr12
3R	12360283	3R_12360283_SNP [dm3] 3R_16534561_SNP [dm6]	T	C	4.533e^-4	0.867	INTRON CG42342	TF binding site mE1_TFBS_HSA
3R	12360297	3R_12360297_SNP [dm3] 3R_16534575_SNP [dm6]	A	G	4.533e^-4	0.867	INTRON CG42342	TF binding site mE1_TFBS_HSA
3R	17613047	3R_17613047_SNP [dm3] 3R_21787325_SNP [dm6]	C	T	4.533e^-4	0.867	INTRON CASK
3R	2554287	3R_2554287_SNP [dm3] 3R_6728565_SNP [dm6]	C	A	4.533e^-4	0.867	INTRON pb	regulatory region FlyBase REDfly_CRMs
3R	2554303	3R_2554303_INS [dm3] 3R_6728581_INS [dm6]	C	CC	4.533e^-4	0.867	INTRON pb	regulatory region FlyBase REDfly_CRMs
2L	15218188	2L_15218188_SNP [dm3] 2L_15218188_SNP [dm6]	A	G	4.541e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_inv
2L	15218282	2L_15218282_SNP [dm3] 2L_15218282_SNP [dm6]	C	T	4.541e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_inv
2L	15218300	2L_15218300_SNP [dm3] 2L_15218300_SNP [dm6]	G	C	4.541e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_inv
2L	15218303	2L_15218303_SNP [dm3] 2L_15218303_SNP [dm6]	C	G	4.541e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_inv
2L	19269674	2L_19269674_SNP [dm3] 2L_19269674_SNP [dm6]	T	C	4.541e^-4	0.867	EXON CR44190
3L	3044535	3L_3044535_SNP [dm3] 3L_3044535_SNP [dm6]	C	T	4.556e^-4	0.867	UTR_3_PRIME scramb2 DOWNSTREAM Jafrac2	TF binding site mE1_TFBS_HSA
2R	13769684	2R_13769684_SNP [dm3] 2R_17882179_SNP [dm6]	A	G	4.576e^-4	0.867	UTR_5_PRIME CG30110 INTRON Elk
2L	18626262	2L_18626262_SNP [dm3] 2L_18626262_SNP [dm6]	C	T	4.622e^-4	0.867	INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	27111680	3R_27111680_SNP [dm3] 3R_31285958_SNP [dm6]	A	C	4.632e^-4	0.867	INTERGENIC
3R	27111734	3R_27111734_SNP [dm3] 3R_31286012_SNP [dm6]	G	C	4.632e^-4	0.867	INTERGENIC
3R	27111740	3R_27111740_SNP [dm3] 3R_31286018_SNP [dm6]	C	T	4.632e^-4	0.867	INTERGENIC
X	4965668	X_4965668_SNP [dm3] X_5071635_SNP [dm6]	C	A	4.681e^-4	0.867	UTR_3_PRIME CG32767 DOWNSTREAM ovo
3L	18482505	3L_18482505_SNP [dm3] 3L_18489405_SNP [dm6]	T	C	4.683e^-4	0.867	INTRON AstC-R2
2L	13931631	2L_13931631_SNP [dm3] 2L_13931631_SNP [dm6]	A	G	4.687e^-4	0.867	UPSTREAM CG42711 DOWNSTREAM CG16885 INTRON Ance-3
3R	16527612	3R_16527612_SNP [dm3] 3R_20701890_SNP [dm6]	T	C	4.779e^-4	0.867	INTRON Oamb
2R	1661070	2R_1661070_SNP [dm3] 2R_5773565_SNP [dm6]	A	G	4.796e^-4	0.867	UTR_3_PRIME Gp210	TF binding site BDTNP1_TFBS_dl
2R	11398943	2R_11398943_SNP [dm3] 2R_15511438_SNP [dm6]	G	A	4.799e^-4	0.867	UPSTREAM GalNAc-T1 INTERGENIC
2R	11399082	2R_11399082_SNP [dm3] 2R_15511577_SNP [dm6]	A	G	4.799e^-4	0.867	UPSTREAM GalNAc-T1 INTERGENIC
4	942795	4_942795_SNP [dm3] 4_922169_SNP [dm6]	C	A	4.802e^-4	0.867	INTRON eIF4G
2R	180775	2R_180775_SNP [dm3] 2R_4293270_SNP [dm6]	G	C	4.802e^-4	0.867	INTERGENIC
2R	19837224	2R_19837224_SNP [dm3] 2R_23949701_SNP [dm6]	T	G	4.810e^-4	0.867	UPSTREAM CG13565 & 1 other INTRON CG2970	TF binding site mE1_TFBS_sens
3R	2228093	3R_2228093_SNP [dm3] 3R_6402371_SNP [dm6]	A	T	4.817e^-4	0.867	INTRON Dmtn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6410655	3R_6410655_SNP [dm3] 3R_10584933_SNP [dm6]	T	G	4.817e^-4	0.867	UTR_3_PRIME hth DOWNSTREAM hth INTRON hth
2L	10153970	2L_10153970_SNP [dm3] 2L_10153970_SNP [dm6]	C	T	4.837e^-4	0.867	SYNONYMOUS_CODING CG4839 INTRON CG44153
2L	1383172	2L_1383172_SNP [dm3] 2L_1383172_SNP [dm6]	C	T	4.847e^-4	0.867	DOWNSTREAM CR44897 INTRON lea
2L	15026059	2L_15026059_SNP [dm3] 2L_15026059_SNP [dm6]	T	C	4.847e^-4	0.867	SYNONYMOUS_CODING GABA-B-R1 UPSTREAM CG33310	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	21665452	2L_21665452_SNP [dm3] 2L_21665452_SNP [dm6]	G	A	4.847e^-4	0.867	UTR_3_PRIME CG2225
2R	1691208	2R_1691208_SNP [dm3] 2R_5803703_SNP [dm6]	G	T	4.847e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18888461	3L_18888461_SNP [dm3] 3L_18895361_SNP [dm6]	G	T	4.851e^-4	0.867	DOWNSTREAM snoRNA:Psi28S-2566 INTRON CG3902
2R	10844496	2R_10844496_SNP [dm3] 2R_14956991_SNP [dm6]	G	A	4.867e^-4	0.867	INTRON aPKC
2R	9263128	2R_9263128_INS [dm3] 2R_13375623_INS [dm6]	T	TCA	4.867e^-4	0.867	DOWNSTREAM CG10814 INTERGENIC
2R	9263132	2R_9263132_SNP [dm3] 2R_13375627_SNP [dm6]	C	A	4.867e^-4	0.867	DOWNSTREAM CG10814 INTERGENIC
3L	11215287	3L_11215287_SNP [dm3] 3L_11222187_SNP [dm6]	A	T	4.867e^-4	0.867	INTRON CG42671
3L	11215288	3L_11215288_SNP [dm3] 3L_11222188_SNP [dm6]	C	T	4.867e^-4	0.867	INTRON CG42671
2L	17137998	2L_17137998_SNP [dm3] 2L_17137998_SNP [dm6]	G	A	4.878e^-4	0.867	INTRON beat-IIIa & 1 other
3L	10484435	3L_10484435_SNP [dm3] 3L_10491335_SNP [dm6]	G	A	4.899e^-4	0.867	SYNONYMOUS_CODING S-Lap4 INTRON A2bp1	TF binding site mE1_TFBS_cad
2L	15255514	2L_15255514_SNP [dm3] 2L_15255514_SNP [dm6]	C	T	4.918e^-4	0.867	SYNONYMOUS_CODING Pol32 DOWNSTREAM dao	TF binding site mE1_TFBS_HSA
2R	1365461	2R_1365461_SNP [dm3] 2R_5477956_SNP [dm6]	G	T	4.938e^-4	0.867	INTRON CG30440
3L	8662115	3L_8662115_SNP [dm3] 3L_8669015_SNP [dm6]	A	C	4.939e^-4	0.867	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6463678	2L_6463678_SNP [dm3] 2L_6463678_SNP [dm6]	G	A	4.941e^-4	0.867	NON_SYNONYMOUS_CODING CG16947	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	7710271	3L_7710271_SNP [dm3] 3L_7717171_SNP [dm6]	C	T	4.945e^-4	0.867	UPSTREAM Ank2 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_HSA
3L	7710287	3L_7710287_SNP [dm3] 3L_7717187_SNP [dm6]	T	A	4.945e^-4	0.867	UPSTREAM Ank2 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_HSA
3L	7710297	3L_7710297_SNP [dm3] 3L_7717197_SNP [dm6]	T	A	4.945e^-4	0.867	UPSTREAM Ank2 INTRON CG32373 & 1 other
3L	7710299	3L_7710299_SNP [dm3] 3L_7717199_SNP [dm6]	G	A	4.945e^-4	0.867	UPSTREAM Ank2 INTRON CG32373 & 1 other
2L	11195384	2L_11195384_SNP [dm3] 2L_11195384_SNP [dm6]	T	G	4.963e^-4	0.867	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da
3R	25181413	3R_25181413_SNP [dm3] 3R_29355691_SNP [dm6]	T	C	4.981e^-4	0.867	DOWNSTREAM CR45547 INTERGENIC
4	969117	4_969117_SNP [dm3] 4_948491_SNP [dm6]	A	C	4.989e^-4	0.867	UTR_3_PRIME mGluR
2R	12437126	2R_12437126_SNP [dm3] 2R_16549621_SNP [dm6]	G	T	5.001e^-4	0.867	INTERGENIC
2L	1642189	2L_1642189_SNP [dm3] 2L_1642189_SNP [dm6]	G	A	5.055e^-4	0.867	INTERGENIC
4	949636	4_949636_SNP [dm3] 4_929010_SNP [dm6]	C	A	5.074e^-4	0.867	INTRON eIF4G
3R	21290801	3R_21290801_SNP [dm3] 3R_25465079_SNP [dm6]	A	G	5.135e^-4	0.867	INTRON Fur1
3L	19056516	3L_19056516_DEL [dm3] 3L_19063416_DEL [dm6]	AA	A	5.139e^-4	0.867	UTR_5_PRIME CG6812 UPSTREAM CG3797	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	12207588	3R_12207588_SNP [dm3] 3R_16381866_SNP [dm6]	A	G	5.171e^-4	0.867	INTRON ss
X	918900	X_918900_SNP [dm3] X_1024867_SNP [dm6]	T	C	5.222e^-4	0.867	INTRON su_w[a]_ & 2 others	transposable element FlyBase
X	919582	X_919582_SNP [dm3] X_1025549_SNP [dm6]	G	A	5.222e^-4	0.867	INTRON su_w[a]_ & 2 others	transposable element FlyBase
X	920866	X_920866_SNP [dm3] X_1026833_SNP [dm6]	T	A	5.222e^-4	0.867	UTR_5_PRIME CG3021 UPSTREAM CG32814 & 1 other INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	212034	2R_212034_SNP [dm3] 2R_4324529_SNP [dm6]	A	T	5.256e^-4	0.867	INTRON Gprk1
2R	8628092	2R_8628092_SNP [dm3] 2R_12740587_SNP [dm6]	T	A	5.256e^-4	0.867	INTRON CG42663	TF binding site mE1_TFBS_cad
3R	15284072	3R_15284072_SNP [dm3] 3R_19458350_SNP [dm6]	G	C	5.268e^-4	0.867	UTR_3_PRIME CG31221 DOWNSTREAM CG31221
X	7427894	X_7427894_SNP [dm3] X_7533861_SNP [dm6]	T	C	5.292e^-4	0.867	INTRON CG32719	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	13741214	2R_13741214_SNP [dm3] 2R_17853709_SNP [dm6]	A	C	5.296e^-4	0.867	SYNONYMOUS_CODING CG30323 INTRON olf186-F
2R	1374830	2R_1374830_SNP [dm3] 2R_5487325_SNP [dm6]	G	A	5.308e^-4	0.867	INTRON CG30440
2R	1390711	2R_1390711_SNP [dm3] 2R_5503206_SNP [dm6]	G	A	5.308e^-4	0.867	DOWNSTREAM TpnC4 INTRON CG30438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	7068651	2L_7068651_SNP [dm3] 2L_7068651_SNP [dm6]	A	G	5.349e^-4	0.867	DOWNSTREAM Pvf2 INTRON CG11289	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7068656	2L_7068656_SNP [dm3] 2L_7068656_SNP [dm6]	G	C	5.349e^-4	0.867	DOWNSTREAM Pvf2 INTRON CG11289	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20464460	3L_20464460_SNP [dm3] 3L_20471360_SNP [dm6]	T	C	5.373e^-4	0.867	INTRON CG32428	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10575311	3R_10575311_SNP [dm3] 3R_14749589_SNP [dm6]	C	T	5.373e^-4	0.867	UTR_5_PRIME jvl UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	12281700	3R_12281700_SNP [dm3] 3R_16455978_SNP [dm6]	T	C	5.373e^-4	0.867	UPSTREAM CG14883 DOWNSTREAM CG10405 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12281754	3R_12281754_SNP [dm3] 3R_16456032_SNP [dm6]	G	A	5.373e^-4	0.867	UPSTREAM CG14883 DOWNSTREAM CG10405 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12357124	3R_12357124_SNP [dm3] 3R_16531402_SNP [dm6]	G	C	5.373e^-4	0.867	INTRON CG42342	TF binding site mE1_TFBS_sens
2R	127296	2R_127296_DEL [dm3] 2R_4239791_DEL [dm6]	AAA	A	5.385e^-4	0.867	INTRON IntS3
2R	1682486	2R_1682486_SNP [dm3] 2R_5794981_SNP [dm6]	A	G	5.394e^-4	0.867	UPSTREAM Tsp42A INTERGENIC
3L	7257520	3L_7257520_SNP [dm3] 3L_7264420_SNP [dm6]	T	G	5.490e^-4	0.867	UPSTREAM CG14830 INTERGENIC
2L	20854801	2L_20854801_SNP [dm3] 2L_20854801_SNP [dm6]	C	T	5.507e^-4	0.867	INTRON twit
2L	17603640	2L_17603640_SNP [dm3] 2L_17603640_SNP [dm6]	C	A	5.508e^-4	0.867	UTR_3_PRIME Sytalpha	TF binding site mE1_TFBS_bab1
2L	17603642	2L_17603642_SNP [dm3] 2L_17603642_SNP [dm6]	C	T	5.508e^-4	0.867	UTR_3_PRIME Sytalpha DOWNSTREAM Sytalpha	TF binding site mE1_TFBS_bab1
2L	17603693	2L_17603693_SNP [dm3] 2L_17603693_SNP [dm6]	C	A	5.508e^-4	0.867	UTR_3_PRIME Sytalpha DOWNSTREAM Sytalpha	TF binding site mE1_TFBS_bab1
2R	253819	2R_253819_SNP [dm3] 2R_4366314_SNP [dm6]	G	T	5.515e^-4	0.867	INTRON Gprk1
2R	264294	2R_264294_INS [dm3] 2R_4376789_INS [dm6]	A	AGTA	5.515e^-4	0.867	INTRON Gprk1
2R	337512	2R_337512_DEL [dm3] 2R_4450007_DEL [dm6]	TCTTGTCT	T	5.515e^-4	0.867	INTRON Gprk1
2R	392235	2R_392235_SNP [dm3] 2R_4504730_SNP [dm6]	C	T	5.515e^-4	0.867	INTERGENIC	transposable element FlyBase
2R	57932	2R_57932_SNP [dm3] 2R_4170427_SNP [dm6]	G	A	5.515e^-4	0.867	INTERGENIC
2R	84441	2R_84441_SNP [dm3] 2R_4196936_SNP [dm6]	A	G	5.515e^-4	0.867	INTERGENIC
3L	7098294	3L_7098294_SNP [dm3] 3L_7105194_SNP [dm6]	C	T	5.515e^-4	0.867	INTRON form3
3L	8669085	3L_8669085_SNP [dm3] 3L_8675985_SNP [dm6]	G	A	5.585e^-4	0.867	UTR_5_PRIME h	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	76736	2R_76736_SNP [dm3] 2R_4189231_SNP [dm6]	A	G	5.606e^-4	0.867	INTERGENIC
3L	5071947	3L_5071947_SNP [dm3] 3L_5071947_SNP [dm6]	T	A	5.609e^-4	0.867	INTRON Con
3L	9579294	3L_9579294_SNP [dm3] 3L_9586194_SNP [dm6]	C	G	5.609e^-4	0.867	INTRON CG42673
3L	18003179	3L_18003179_SNP [dm3] 3L_18010079_SNP [dm6]	C	T	5.624e^-4	0.867	INTRON Eip75B	TF binding site mE1_TFBS_Trl
3L	18003187	3L_18003187_SNP [dm3] 3L_18010087_SNP [dm6]	T	A	5.624e^-4	0.867	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18003202	3L_18003202_SNP [dm3] 3L_18010102_SNP [dm6]	G	A	5.624e^-4	0.867	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18003213	3L_18003213_SNP [dm3] 3L_18010113_SNP [dm6]	T	A	5.624e^-4	0.867	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18003215	3L_18003215_SNP [dm3] 3L_18010115_SNP [dm6]	A	T	5.624e^-4	0.867	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18003294	3L_18003294_SNP [dm3] 3L_18010194_SNP [dm6]	C	T	5.624e^-4	0.867	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18003311	3L_18003311_SNP [dm3] 3L_18010211_SNP [dm6]	C	T	5.624e^-4	0.867	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	6562999	3R_6562999_SNP [dm3] 3R_10737277_SNP [dm6]	G	C	5.648e^-4	0.867	DOWNSTREAM TkR86C INTERGENIC
2R	9668224	2R_9668224_SNP [dm3] 2R_13780719_SNP [dm6]	C	T	5.658e^-4	0.867	UPSTREAM S-Lap7 INTRON Cpr50Ca
X	907605	X_907605_SNP [dm3] X_1013572_SNP [dm6]	G	A	5.658e^-4	0.867	DOWNSTREAM CG14631 & 1 other INTRON su_w[a]_
X	912641	X_912641_SNP [dm3] X_1018608_SNP [dm6]	C	A	5.658e^-4	0.867	INTRON su_w[a]_ & 1 other
X	913801	X_913801_SNP [dm3] X_1019768_SNP [dm6]	A	C	5.658e^-4	0.867	DOWNSTREAM CG32814 INTRON su_w[a]_ & 1 other
X	917380	X_917380_SNP [dm3] X_1023347_SNP [dm6]	T	G	5.658e^-4	0.867	INTRON su_w[a]_ & 2 others
X	917641	X_917641_SNP [dm3] X_1023608_SNP [dm6]	G	T	5.658e^-4	0.867	INTRON su_w[a]_ & 2 others
X	917694	X_917694_SNP [dm3] X_1023661_SNP [dm6]	G	A	5.658e^-4	0.867	INTRON su_w[a]_ & 2 others
X	918914	X_918914_SNP [dm3] X_1024881_SNP [dm6]	C	A	5.658e^-4	0.867	INTRON su_w[a]_ & 2 others	transposable element FlyBase
X	919050	X_919050_SNP [dm3] X_1025017_SNP [dm6]	C	G	5.658e^-4	0.867	INTRON su_w[a]_ & 2 others	transposable element FlyBase
X	920540	X_920540_SNP [dm3] X_1026507_SNP [dm6]	G	A	5.658e^-4	0.867	UPSTREAM CG3021 INTRON su_w[a]_ & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	920725	X_920725_DEL [dm3] X_1026692_DEL [dm6]	AA	A	5.658e^-4	0.867	UTR_5_PRIME CG32814 & 1 other UPSTREAM CG3021 INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16008545	3L_16008545_SNP [dm3] 3L_16015445_SNP [dm6]	C	G	5.692e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_Trl
3L	16008556	3L_16008556_SNP [dm3] 3L_16015456_SNP [dm6]	A	T	5.692e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_Trl
3L	16008558	3L_16008558_SNP [dm3] 3L_16015458_SNP [dm6]	T	G	5.692e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_Trl
3L	16008570	3L_16008570_SNP [dm3] 3L_16015470_SNP [dm6]	C	A	5.692e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_Trl
2L	16856365	2L_16856365_SNP [dm3] 2L_16856365_SNP [dm6]	C	A	5.694e^-4	0.867	INTRON CG31809	transposable element FlyBase
2R	10835031	2R_10835031_SNP [dm3] 2R_14947526_SNP [dm6]	G	A	5.694e^-4	0.867	INTRON aPKC
2R	1729374	2R_1729374_SNP [dm3] 2R_5841869_SNP [dm6]	T	A	5.694e^-4	0.867	INTRON dpr12
2R	19406302	2R_19406302_SNP [dm3] 2R_23518779_SNP [dm6]	A	C	5.694e^-4	0.867	INTERGENIC
2R	6327586	2R_6327586_SNP [dm3] 2R_10440081_SNP [dm6]	C	T	5.694e^-4	0.867	INTRON Galphao	TF binding site BDTNP1_TFBS_twi
2R	9326364	2R_9326364_SNP [dm3] 2R_13438859_SNP [dm6]	A	T	5.694e^-4	0.867	UTR_5_PRIME CG42321 DOWNSTREAM tRNA:CR30509 & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	9326420	2R_9326420_SNP [dm3] 2R_13438915_SNP [dm6]	A	G	5.694e^-4	0.867	UTR_5_PRIME CG42321 DOWNSTREAM tRNA:CR30509 & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	9326433	2R_9326433_SNP [dm3] 2R_13438928_SNP [dm6]	A	G	5.694e^-4	0.867	SPLICE_SITE_REGION CG42321 UTR_5_PRIME CG42321 DOWNSTREAM tRNA:CR30509 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	1005271	3L_1005271_SNP [dm3] 3L_1005271_SNP [dm6]	A	T	5.694e^-4	0.867	INTRON trio
3L	1005273	3L_1005273_SNP [dm3] 3L_1005273_SNP [dm6]	C	T	5.694e^-4	0.867	INTRON trio
3L	1005275	3L_1005275_SNP [dm3] 3L_1005275_SNP [dm6]	T	A	5.694e^-4	0.867	INTRON trio
X	15955954	X_15955954_SNP [dm3] X_16061921_SNP [dm6]	T	C	5.694e^-4	0.867	UTR_3_PRIME CG12395 DOWNSTREAM Muc14A
X	15956011	X_15956011_SNP [dm3] X_16061978_SNP [dm6]	T	A	5.694e^-4	0.867	UTR_3_PRIME CG12395 DOWNSTREAM Muc14A
X	3208995	X_3208995_SNP [dm3] X_3314962_SNP [dm6]	A	G	5.694e^-4	0.867	NON_SYNONYMOUS_CODING CG10793 INTRON dnc & 1 other
2R	70431	2R_70431_SNP [dm3] 2R_4182926_SNP [dm6]	G	T	5.698e^-4	0.867	INTERGENIC
2L	17603484	2L_17603484_SNP [dm3] 2L_17603484_SNP [dm6]	T	A	5.706e^-4	0.867	UTR_3_PRIME Sytalpha	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	9638738	3L_9638738_SNP [dm3] 3L_9645638_SNP [dm6]	A	G	5.718e^-4	0.867	INTRON fry & 1 other
3L	7087783	3L_7087783_SNP [dm3] 3L_7094683_SNP [dm6]	G	C	5.778e^-4	0.867	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
2R	10393530	2R_10393530_SNP [dm3] 2R_14506025_SNP [dm6]	A	G	5.791e^-4	0.867	SYNONYMOUS_CODING Asx
X	8470253	X_8470253_DEL [dm3] X_8576220_DEL [dm6]	CCC	C	5.791e^-4	0.867	INTRON CG12065
X	903452	X_903452_SNP [dm3] X_1009419_SNP [dm6]	C	G	5.791e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_chinmo
X	903643	X_903643_SNP [dm3] X_1009610_SNP [dm6]	G	T	5.791e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	12993827	2R_12993827_SNP [dm3] 2R_17106322_SNP [dm6]	A	C	5.796e^-4	0.867	SYNONYMOUS_CODING CG30456	TF binding site mE1_TFBS_cad
2L	743129	2L_743129_SNP [dm3] 2L_743129_SNP [dm6]	T	A	5.797e^-4	0.867	INTRON Eaat2
3R	2412187	3R_2412187_SNP [dm3] 3R_6586465_SNP [dm6]	A	C	5.809e^-4	0.867	INTRON dpr11
2R	7890595	2R_7890595_SNP [dm3] 2R_12003090_SNP [dm6]	A	G	5.812e^-4	0.867	SYNONYMOUS_CODING otk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25439105	3R_25439105_SNP [dm3] 3R_29613383_SNP [dm6]	C	G	5.812e^-4	0.867	INTRON alph
3R	2796920	3R_2796920_SNP [dm3] 3R_6971198_SNP [dm6]	T	A	5.887e^-4	0.867	INTRON Antp
3R	27324666	3R_27324666_SNP [dm3] 3R_31498944_SNP [dm6]	C	T	5.910e^-4	0.867	UPSTREAM mey INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9233139	2L_9233139_SNP [dm3] 2L_9233139_SNP [dm6]	C	T	5.968e^-4	0.867	INTRON tai
2L	10187059	2L_10187059_SNP [dm3] 2L_10187059_SNP [dm6]	C	A	5.981e^-4	0.867	NON_SYNONYMOUS_CODING Sur
2L	11144226	2L_11144226_SNP [dm3] 2L_11144226_SNP [dm6]	T	G	5.981e^-4	0.867	NON_SYNONYMOUS_CODING Gyc32E DOWNSTREAM CG31867	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1404204	2L_1404204_SNP [dm3] 2L_1404204_SNP [dm6]	A	G	5.981e^-4	0.867	INTRON lea	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_kn
2L	1436161	2L_1436161_SNP [dm3] 2L_1436161_SNP [dm6]	A	T	5.981e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	21850330	X_21850330_SNP [dm3] X_22448494_SNP [dm6]	C	T	5.994e^-4	0.867	DOWNSTREAM CG14621 INTRON CG14615
3L	7087772	3L_7087772_SNP [dm3] 3L_7094672_SNP [dm6]	A	G	6.007e^-4	0.867	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
3L	7722886	3L_7722886_SNP [dm3] 3L_7729786_SNP [dm6]	T	C	6.010e^-4	0.867	SYNONYMOUS_CODING CG8492 INTRON CG32373
3L	7722928	3L_7722928_SNP [dm3] 3L_7729828_SNP [dm6]	T	C	6.010e^-4	0.867	SYNONYMOUS_CODING CG8492 INTRON CG32373
2R	1666423	2R_1666423_SNP [dm3] 2R_5778918_SNP [dm6]	T	A	6.031e^-4	0.867	INTRON ZnT41F	transposable element FlyBase
3L	8425618	3L_8425618_SNP [dm3] 3L_8432518_SNP [dm6]	C	T	6.040e^-4	0.867	UTR_3_PRIME Unr DOWNSTREAM Unr & 1 other
2L	19723578	2L_19723578_SNP [dm3] 2L_19723578_SNP [dm6]	C	A	6.095e^-4	0.867	INTRON Lar
3L	1899793	3L_1899793_SNP [dm3] 3L_1899793_SNP [dm6]	T	C	6.096e^-4	0.867	DOWNSTREAM CG1887 INTRON CG1887
2L	22680934	2L_22680934_DEL [dm3] 2L_22788202_DEL [dm6]	AATTCACAATGAA...	A	6.128e^-4	0.867	INTERGENIC
2L	22681324	2L_22681324_DEL [dm3] 2L_22788592_DEL [dm6]	AA	A	6.128e^-4	0.867	INTERGENIC
2L	22691317	2L_22691317_SNP [dm3] 2L_22798585_SNP [dm6]	A	T	6.128e^-4	0.867	UPSTREAM CG40439 INTERGENIC	TF binding site mE1_TFBS_Ubx
2L	22701809	2L_22701809_SNP [dm3] 2L_22809077_SNP [dm6]	C	T	6.128e^-4	0.867	INTERGENIC
2L	22715818	2L_22715818_SNP [dm3] 2L_22823086_SNP [dm6]	G	T	6.128e^-4	0.867	INTERGENIC
3L	10249263	3L_10249263_SNP [dm3] 3L_10256163_SNP [dm6]	C	T	6.138e^-4	0.867	INTERGENIC
3L	12813124	3L_12813124_SNP [dm3] 3L_12820024_SNP [dm6]	A	C	6.138e^-4	0.867	NON_SYNONYMOUS_CODING CG42588
3R	19531337	3R_19531337_SNP [dm3] 3R_23705615_SNP [dm6]	C	G	6.138e^-4	0.867	NON_SYNONYMOUS_CODING CG31414 DOWNSTREAM CR44052	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	25197484	3R_25197484_SNP [dm3] 3R_29371762_SNP [dm6]	C	T	6.149e^-4	0.867	INTERGENIC
2L	19315003	2L_19315003_SNP [dm3] 2L_19315003_SNP [dm6]	A	G	6.184e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12467717	3L_12467717_SNP [dm3] 3L_12474617_SNP [dm6]	T	G	6.210e^-4	0.867	UTR_3_PRIME CG10663 DOWNSTREAM CG10663 & 1 other
3L	18092675	3L_18092675_SNP [dm3] 3L_18099575_SNP [dm6]	G	T	6.229e^-4	0.867	INTRON CG13698
2L	20866883	2L_20866883_SNP [dm3] 2L_20866883_SNP [dm6]	C	A	6.232e^-4	0.867	UPSTREAM CG31675 INTRON CG9338
X	8539407	X_8539407_SNP [dm3] X_8645374_SNP [dm6]	A	T	6.233e^-4	0.867	INTRON oc
3L	18851780	3L_18851780_SNP [dm3] 3L_18858680_SNP [dm6]	G	T	6.284e^-4	0.867	DOWNSTREAM CR45388 INTERGENIC
3L	18851781	3L_18851781_SNP [dm3] 3L_18858681_SNP [dm6]	G	C	6.284e^-4	0.867	DOWNSTREAM CR45388 INTERGENIC
3L	18851784	3L_18851784_SNP [dm3] 3L_18858684_SNP [dm6]	C	T	6.284e^-4	0.867	DOWNSTREAM CR45388 INTERGENIC
X	4286292	X_4286292_INS [dm3] X_4392259_INS [dm6]	T	TA	6.314e^-4	0.867	INTRON CR32773
2L	9349371	2L_9349371_SNP [dm3] 2L_9349371_SNP [dm6]	G	A	6.364e^-4	0.867	UPSTREAM CG43350 & 1 other INTERGENIC
4	1041968	4_1041968_SNP [dm3] 4_1021342_SNP [dm6]	T	C	6.390e^-4	0.867	INTRON PlexA
4	1006637	4_1006637_SNP [dm3] 4_986011_SNP [dm6]	C	A	6.433e^-4	0.867	INTERGENIC	regulatory region REDfly_CRMs
4	1041861	4_1041861_SNP [dm3] 4_1021235_SNP [dm6]	A	G	6.433e^-4	0.867	INTRON PlexA	transposable element FlyBase
4	1048095	4_1048095_SNP [dm3] 4_1027469_SNP [dm6]	C	T	6.433e^-4	0.867	UPSTREAM CR44031 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
4	1048261	4_1048261_SNP [dm3] 4_1027635_SNP [dm6]	T	G	6.433e^-4	0.867	UPSTREAM CR44031 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
4	971605	4_971605_SNP [dm3] 4_950979_SNP [dm6]	T	G	6.433e^-4	0.867	DOWNSTREAM 4E-T INTERGENIC	transposable element FlyBase
4	973222	4_973222_SNP [dm3] 4_952596_SNP [dm6]	T	A	6.433e^-4	0.867	INTRON 4E-T	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
4	992270	4_992270_SNP [dm3] 4_971644_SNP [dm6]	C	T	6.433e^-4	0.867	INTRON fuss
2R	156210	2R_156210_SNP [dm3] 2R_4268705_SNP [dm6]	G	A	6.455e^-4	0.867	INTERGENIC
3L	8673546	3L_8673546_SNP [dm3] 3L_8680446_SNP [dm6]	G	A	6.460e^-4	0.867	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	12993565	2R_12993565_SNP [dm3] 2R_17106060_SNP [dm6]	G	A	6.462e^-4	0.867	SPLICE_SITE_REGION CG30456 INTRON CG30456
2R	12993603	2R_12993603_SNP [dm3] 2R_17106098_SNP [dm6]	T	C	6.462e^-4	0.867	INTRON CG30456
3R	13101812	3R_13101812_SNP [dm3] 3R_17276090_SNP [dm6]	T	A	6.472e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5776026	3L_5776026_SNP [dm3] 3L_5782926_SNP [dm6]	G	C	6.475e^-4	0.867	NON_SYNONYMOUS_CODING PGRP-LD UTR_3_PRIME Pmi DOWNSTREAM Cralbp	TF binding site mE1_TFBS_cad
3L	6637716	3L_6637716_SNP [dm3] 3L_6644616_SNP [dm6]	T	G	6.475e^-4	0.867	INTERGENIC
3R	19531246	3R_19531246_SNP [dm3] 3R_23705524_SNP [dm6]	T	C	6.475e^-4	0.867	DOWNSTREAM CG31413 & 1 other INTRON CG31414	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	19531255	3R_19531255_SNP [dm3] 3R_23705533_SNP [dm6]	G	C	6.475e^-4	0.867	DOWNSTREAM CG31413 & 1 other INTRON CG31414	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	21677801	2L_21677801_SNP [dm3] 2L_21677801_SNP [dm6]	T	C	6.488e^-4	0.867	UPSTREAM CG2225 DOWNSTREAM EF2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10709425	3L_10709425_SNP [dm3] 3L_10716325_SNP [dm6]	C	A	6.492e^-4	0.867	INTERGENIC
2R	9263181	2R_9263181_SNP [dm3] 2R_13375676_SNP [dm6]	T	C	6.505e^-4	0.867	DOWNSTREAM CG10814 INTERGENIC
3L	11215275	3L_11215275_SNP [dm3] 3L_11222175_SNP [dm6]	C	T	6.505e^-4	0.867	INTRON CG42671
2L	11147047	2L_11147047_SNP [dm3] 2L_11147047_SNP [dm6]	T	A	6.516e^-4	0.867	INTRON Gyc32E
2L	7239823	2L_7239823_SNP [dm3] 2L_7239823_SNP [dm6]	T	C	6.517e^-4	0.867	INTRON Ndae1
2L	7239824	2L_7239824_SNP [dm3] 2L_7239824_SNP [dm6]	T	A	6.517e^-4	0.867	INTRON Ndae1
3R	21290429	3R_21290429_SNP [dm3] 3R_25464707_SNP [dm6]	T	C	6.534e^-4	0.867	INTRON Fur1
3R	21290505	3R_21290505_SNP [dm3] 3R_25464783_SNP [dm6]	C	T	6.534e^-4	0.867	INTRON Fur1
2R	7904711	2R_7904711_SNP [dm3] 2R_12017206_SNP [dm6]	T	C	6.556e^-4	0.867	INTRON otk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	22067258	X_22067258_DEL [dm3] X_22665422_DEL [dm6]	AAA	A	6.560e^-4	0.867	INTRON CR44997
3L	4027492	3L_4027492_SNP [dm3] 3L_4027492_SNP [dm6]	T	A	6.576e^-4	0.867	INTRON Gr64a
3R	3457651	3R_3457651_SNP [dm3] 3R_7631929_SNP [dm6]	T	G	6.576e^-4	0.867	INTRON CG34127
2L	11347908	2L_11347908_SNP [dm3] 2L_11347908_SNP [dm6]	A	G	6.583e^-4	0.867	INTERGENIC
2L	11741447	2L_11741447_SNP [dm3] 2L_11741447_SNP [dm6]	C	A	6.583e^-4	0.867	INTRON Vha100-5	TF binding site mE1_TFBS_chinmo
2L	16541845	2L_16541845_SNP [dm3] 2L_16541845_SNP [dm6]	G	C	6.638e^-4	0.867	UPSTREAM CG31816 INTERGENIC
3L	3044233	3L_3044233_SNP [dm3] 3L_3044233_SNP [dm6]	G	C	6.683e^-4	0.867	UTR_3_PRIME scramb2 DOWNSTREAM Jafrac2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	20408875	2R_20408875_INS [dm3] 2R_24521352_INS [dm6]	A	GAG	6.779e^-4	0.867	UPSTREAM Ir60f DOWNSTREAM CG4612 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	4549743	X_4549743_SNP [dm3] X_4655710_SNP [dm6]	G	A	6.779e^-4	0.867	INTRON Cbp80
2R	9757828	2R_9757828_SNP [dm3] 2R_13870323_SNP [dm6]	A	C	6.780e^-4	0.867	INTRON shot
2R	9791105	2R_9791105_SNP [dm3] 2R_13903600_SNP [dm6]	A	T	6.780e^-4	0.867	INTRON shot	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	13150514	3L_13150514_SNP [dm3] 3L_13157414_SNP [dm6]	A	G	6.780e^-4	0.867	INTERGENIC
X	1912567	X_1912567_SNP [dm3] X_2018534_SNP [dm6]	C	A	6.780e^-4	0.867	INTRON east
3R	15284074	3R_15284074_SNP [dm3] 3R_19458352_SNP [dm6]	T	C	6.781e^-4	0.867	UTR_3_PRIME CG31221 DOWNSTREAM CG31221
2R	1682327	2R_1682327_SNP [dm3] 2R_5794822_SNP [dm6]	A	C	6.816e^-4	0.867	UPSTREAM Tsp42A INTERGENIC	transposable element FlyBase
2R	16870919	2R_16870919_SNP [dm3] 2R_20983414_SNP [dm6]	C	T	6.903e^-4	0.867	SYNONYMOUS_CODING CG9313 DOWNSTREAM CG15651
2R	16870967	2R_16870967_SNP [dm3] 2R_20983462_SNP [dm6]	C	T	6.903e^-4	0.867	SYNONYMOUS_CODING CG9313 DOWNSTREAM CG15651
2R	16871073	2R_16871073_SNP [dm3] 2R_20983568_SNP [dm6]	C	A	6.903e^-4	0.867	DOWNSTREAM CG15651 INTRON CG9313
2R	1664515	2R_1664515_SNP [dm3] 2R_5777010_SNP [dm6]	A	G	6.915e^-4	0.867	INTRON ZnT41F
3L	18858765	3L_18858765_SNP [dm3] 3L_18865665_SNP [dm6]	A	C	6.954e^-4	0.867	UPSTREAM CG14074 DOWNSTREAM CG6865 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23639187	3R_23639187_SNP [dm3] 3R_27813465_SNP [dm6]	T	C	6.964e^-4	0.867	INTRON CG34353
2L	21635470	2L_21635470_SNP [dm3] 2L_21635470_SNP [dm6]	T	C	7.017e^-4	0.867	INTRON Ac3	TF binding site BDTNP1_TFBS_dl
3L	9500242	3L_9500242_SNP [dm3] 3L_9507142_SNP [dm6]	A	T	7.028e^-4	0.867	UTR_3_PRIME CG3408
2R	7902130	2R_7902130_DEL [dm3] 2R_12014625_DEL [dm6]	TA	T	7.032e^-4	0.867	UPSTREAM CR44306 INTRON otk
2R	7902138	2R_7902138_DEL [dm3] 2R_12014633_DEL [dm6]	AA	C	7.032e^-4	0.867	UPSTREAM CR44306 INTRON otk
4	973221	4_973221_SNP [dm3] 4_952595_SNP [dm6]	G	A	7.041e^-4	0.867	INTRON 4E-T	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9668192	2R_9668192_SNP [dm3] 2R_13780687_SNP [dm6]	G	A	7.044e^-4	0.867	UPSTREAM S-Lap7 INTRON Cpr50Ca
2R	9668194	2R_9668194_SNP [dm3] 2R_13780689_SNP [dm6]	A	G	7.044e^-4	0.867	UPSTREAM S-Lap7 INTRON Cpr50Ca
2R	6589786	2R_6589786_SNP [dm3] 2R_10702281_SNP [dm6]	T	A	7.064e^-4	0.867	INTRON stan
2L	7068653	2L_7068653_SNP [dm3] 2L_7068653_SNP [dm6]	G	A	7.165e^-4	0.867	DOWNSTREAM Pvf2 INTRON CG11289	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11406192	2R_11406192_INS [dm3] 2R_15518687_INS [dm6]	G	GCAGCGCTGG	7.168e^-4	0.867	CODON_INSERTION Khc-73 UTR_3_PRIME Khc-73	TF binding site mE1_TFBS_chinmo
3L	18872869	3L_18872869_SNP [dm3] 3L_18879769_SNP [dm6]	C	T	7.169e^-4	0.867	INTRON CG3961	TF binding site mE1_TFBS_cad
3L	18572150	3L_18572150_SNP [dm3] 3L_18579050_SNP [dm6]	C	A	7.178e^-4	0.867	INTERGENIC
3R	13872479	3R_13872479_SNP [dm3] 3R_18046757_SNP [dm6]	A	G	7.199e^-4	0.867	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13872539	3R_13872539_SNP [dm3] 3R_18046817_SNP [dm6]	A	G	7.199e^-4	0.867	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19332799	2R_19332799_SNP [dm3] 2R_23445276_SNP [dm6]	C	T	7.223e^-4	0.867	INTRON CG43795
2R	19332800	2R_19332800_DEL [dm3] 2R_23445277_DEL [dm6]	CAA	C	7.223e^-4	0.867	INTRON CG43795
3L	18003253	3L_18003253_SNP [dm3] 3L_18010153_SNP [dm6]	G	C	7.223e^-4	0.867	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	1692515	2R_1692515_SNP [dm3] 2R_5805010_SNP [dm6]	G	T	7.250e^-4	0.867	START_GAINED dpr12 UTR_5_PRIME dpr12	TF binding site mE1_TFBS_cad
3L	6182561	3L_6182561_SNP [dm3] 3L_6189461_SNP [dm6]	T	A	7.286e^-4	0.867	UPSTREAM CG7386 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
X	13574007	X_13574007_SNP [dm3] X_13679974_SNP [dm6]	T	C	7.299e^-4	0.867	SYNONYMOUS_CODING CG12177	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13419989	2L_13419989_SNP [dm3] 2L_13419989_SNP [dm6]	C	A	7.328e^-4	0.867	INTRON CG43850 & 1 other
3L	8197353	3L_8197353_SNP [dm3] 3L_8204253_SNP [dm6]	T	G	7.340e^-4	0.867	DOWNSTREAM CG13679 INTERGENIC
3L	4700327	3L_4700327_SNP [dm3] 3L_4700327_SNP [dm6]	C	T	7.376e^-4	0.867	INTRON RhoGEF64C
3L	7220459	3L_7220459_SNP [dm3] 3L_7227359_SNP [dm6]	G	C	7.387e^-4	0.867	INTERGENIC
X	3047052	X_3047052_INS [dm3] X_3153019_INS [dm6]	A	AGA	7.387e^-4	0.867	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10257181	3R_10257181_SNP [dm3] 3R_14431459_SNP [dm6]	T	C	7.409e^-4	0.867	INTRON cv-c	TF binding site BDTNP1_TFBS_twi
3R	3432744	3R_3432744_SNP [dm3] 3R_7607022_SNP [dm6]	T	G	7.419e^-4	0.867	INTRON CG34127	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5525724	3L_5525724_SNP [dm3] 3L_5532624_SNP [dm6]	C	A	7.485e^-4	0.867	INTERGENIC
2R	12114510	2R_12114510_SNP [dm3] 2R_16227005_SNP [dm6]	C	T	7.515e^-4	0.867	UPSTREAM CG15706 INTRON CG15706 & 1 other
3L	6687882	3L_6687882_SNP [dm3] 3L_6694782_SNP [dm6]	T	A	7.534e^-4	0.867	INTRON SP1173
X	10253838	X_10253838_SNP [dm3] X_10359805_SNP [dm6]	C	G	7.534e^-4	0.867	NON_SYNONYMOUS_CODING l_1_G0289	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	917349	X_917349_SNP [dm3] X_1023316_SNP [dm6]	G	A	7.534e^-4	0.867	INTRON su_w[a]_ & 2 others
2R	18903759	2R_18903759_INS [dm3] 2R_23016236_INS [dm6]	A	ATATA	7.560e^-4	0.867	INTRON twi & 1 other
2R	17549821	2R_17549821_SNP [dm3] 2R_21662316_SNP [dm6]	C	G	7.568e^-4	0.867	UTR_5_PRIME pirk UPSTREAM CR44748 & 1 other
3R	5644403	3R_5644403_SNP [dm3] 3R_9818681_SNP [dm6]	C	T	7.572e^-4	0.867	UPSTREAM CG9459 DOWNSTREAM CG9458 INTERGENIC
2R	485514	2R_485514_SNP [dm3] 2R_4598009_SNP [dm6]	A	C	7.657e^-4	0.867	INTRON p120ctn
2R	9264785	2R_9264785_SNP [dm3] 2R_13377280_SNP [dm6]	T	G	7.679e^-4	0.867	NON_SYNONYMOUS_CODING CG10814	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1156454	2R_1156454_SNP [dm3] 2R_5268949_SNP [dm6]	C	T	7.683e^-4	0.867	INTRON d4
3R	25359120	3R_25359120_SNP [dm3] 3R_29533398_SNP [dm6]	C	T	7.698e^-4	0.867	INTERGENIC
2L	11644474	2L_11644474_SNP [dm3] 2L_11644474_SNP [dm6]	A	G	7.708e^-4	0.867	DOWNSTREAM CG6614 INTERGENIC
3R	9616021	3R_9616021_SNP [dm3] 3R_13790299_SNP [dm6]	T	C	7.716e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_Trl
3L	8782533	3L_8782533_SNP [dm3] 3L_8789433_SNP [dm6]	A	T	7.735e^-4	0.867	SYNONYMOUS_CODING Fhos UPSTREAM CG5804
2L	15163957	2L_15163957_DEL [dm3] 2L_15163957_DEL [dm6]	TAC	T	7.748e^-4	0.867	INTRON CG4168
2R	18872361	2R_18872361_SNP [dm3] 2R_22984838_SNP [dm6]	C	G	7.771e^-4	0.867	SYNONYMOUS_CODING CG32833 UPSTREAM CG32834 & 2 others DOWNSTREAM mir-4939 & 1 other
2R	9263166	2R_9263166_SNP [dm3] 2R_13375661_SNP [dm6]	C	A	7.775e^-4	0.867	DOWNSTREAM CG10814 INTERGENIC
3L	11915444	3L_11915444_SNP [dm3] 3L_11922344_SNP [dm6]	A	C	7.804e^-4	0.867	NON_SYNONYMOUS_CODING CG11588 DOWNSTREAM CG5718 INTRON CG44837	TF binding site mE1_TFBS_cad
2R	959388	2R_959388_SNP [dm3] 2R_5071883_SNP [dm6]	G	C	7.826e^-4	0.867	INTERGENIC
3L	15204845	3L_15204845_SNP [dm3] 3L_15211745_SNP [dm6]	C	T	7.859e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26118376	3R_26118376_DEL [dm3] 3R_30292654_DEL [dm6]	TTATT	T	7.878e^-4	0.867	INTRON hdc
2R	1654690	2R_1654690_DEL [dm3] 2R_5767185_DEL [dm6]	CGTGGGCGTTAG...	C	7.884e^-4	0.867	INTRON Gp210
3R	17713108	3R_17713108_SNP [dm3] 3R_21887386_SNP [dm6]	C	T	7.893e^-4	0.867	START_GAINED CG6678 UTR_5_PRIME CG6678 UPSTREAM dnd	TF binding site mE1_TFBS_HSA
2L	15168466	2L_15168466_SNP [dm3] 2L_15168466_SNP [dm6]	C	G	7.918e^-4	0.867	INTRON CG4168
3R	14190814	3R_14190814_SNP [dm3] 3R_18365092_SNP [dm6]	C	T	7.976e^-4	0.867	DOWNSTREAM CG7669 INTRON WRNexo	TF binding site mE1_TFBS_sens
3R	14190816	3R_14190816_SNP [dm3] 3R_18365094_SNP [dm6]	A	C	7.976e^-4	0.867	DOWNSTREAM CG7669 INTRON WRNexo	TF binding site mE1_TFBS_sens
2R	19785931	2R_19785931_SNP [dm3] 2R_23898408_SNP [dm6]	A	C	7.990e^-4	0.867	UPSTREAM Lpt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	12150407	2L_12150407_SNP [dm3] 2L_12150407_SNP [dm6]	T	C	7.999e^-4	0.867	INTRON CG31760
2L	12150419	2L_12150419_SNP [dm3] 2L_12150419_SNP [dm6]	A	T	7.999e^-4	0.867	INTRON CG31760
3R	2412011	3R_2412011_SNP [dm3] 3R_6586289_SNP [dm6]	G	A	8.017e^-4	0.867	INTRON dpr11
3L	18157937	3L_18157937_SNP [dm3] 3L_18164837_SNP [dm6]	G	A	8.028e^-4	0.867	INTERGENIC
3L	3718625	3L_3718625_SNP [dm3] 3L_3718625_SNP [dm6]	G	A	8.028e^-4	0.867	INTRON CG32264	TF binding site mE1_TFBS_cad
2R	12079	2R_12079_SNP [dm3] 2R_4124574_SNP [dm6]	G	T	8.081e^-4	0.867	INTERGENIC
2R	18233012	2R_18233012_SNP [dm3] 2R_22345507_SNP [dm6]	G	C	8.081e^-4	0.867	INTRON Liprin-gamma
X	3169331	X_3169331_SNP [dm3] X_3275298_SNP [dm6]	C	T	8.081e^-4	0.867	INTRON dnc
2R	17801920	2R_17801920_SNP [dm3] 2R_21914415_SNP [dm6]	G	T	8.106e^-4	0.867	INTRON Fili
3R	6116208	3R_6116208_SNP [dm3] 3R_10290486_SNP [dm6]	A	C	8.135e^-4	0.867	UPSTREAM CG43143 INTRON CG43143
2R	18869827	2R_18869827_SNP [dm3] 2R_22982304_SNP [dm6]	G	T	8.155e^-4	0.867	DOWNSTREAM CG32834 INTERGENIC
2R	7769269	2R_7769269_SNP [dm3] 2R_11881764_SNP [dm6]	T	C	8.155e^-4	0.867	SYNONYMOUS_CODING CG13185
2R	8185299	2R_8185299_SNP [dm3] 2R_12297794_SNP [dm6]	A	C	8.155e^-4	0.867	UTR_3_PRIME CG42700 DOWNSTREAM CG8850 EXON CR45271
2R	8219615	2R_8219615_SNP [dm3] 2R_12332110_SNP [dm6]	G	A	8.155e^-4	0.867	INTRON garz	TF binding site mE1_TFBS_cad
2R	8284333	2R_8284333_SNP [dm3] 2R_12396828_SNP [dm6]	A	C	8.155e^-4	0.867	NON_SYNONYMOUS_CODING CG30048
2R	8284334	2R_8284334_SNP [dm3] 2R_12396829_SNP [dm6]	C	A	8.155e^-4	0.867	NON_SYNONYMOUS_CODING CG30048
2R	8284397	2R_8284397_SNP [dm3] 2R_12396892_SNP [dm6]	T	C	8.155e^-4	0.867	SYNONYMOUS_CODING CG30048
2R	8284409	2R_8284409_SNP [dm3] 2R_12396904_SNP [dm6]	C	T	8.155e^-4	0.867	SYNONYMOUS_CODING CG30048
2R	8284481	2R_8284481_SNP [dm3] 2R_12396976_SNP [dm6]	A	G	8.155e^-4	0.867	SYNONYMOUS_CODING CG30048
2R	8287694	2R_8287694_SNP [dm3] 2R_12400189_SNP [dm6]	C	T	8.155e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	8287699	2R_8287699_SNP [dm3] 2R_12400194_SNP [dm6]	C	T	8.155e^-4	0.867	INTERGENIC
2R	8287719	2R_8287719_SNP [dm3] 2R_12400214_SNP [dm6]	A	G	8.155e^-4	0.867	INTERGENIC
2R	8287724	2R_8287724_SNP [dm3] 2R_12400219_SNP [dm6]	C	T	8.155e^-4	0.867	INTERGENIC
2R	8287735	2R_8287735_SNP [dm3] 2R_12400230_SNP [dm6]	A	G	8.155e^-4	0.867	INTERGENIC
3L	11897236	3L_11897236_SNP [dm3] 3L_11904136_SNP [dm6]	C	A	8.155e^-4	0.867	INTRON CG44837
X	14962567	X_14962567_SNP [dm3] X_15068534_SNP [dm6]	A	G	8.155e^-4	0.867	NON_SYNONYMOUS_CODING dob DOWNSTREAM Lsd-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14963225	X_14963225_SNP [dm3] X_15069192_SNP [dm6]	T	C	8.155e^-4	0.867	UTR_3_PRIME Lsd-2 DOWNSTREAM dob
2L	13966028	2L_13966028_SNP [dm3] 2L_13966028_SNP [dm6]	A	G	8.172e^-4	0.867	DOWNSTREAM NimB1 INTRON NimB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15324411	X_15324411_SNP [dm3] X_15430378_SNP [dm6]	C	T	8.184e^-4	0.867	INTRON Cngl
X	11255625	X_11255625_SNP [dm3] X_11361592_SNP [dm6]	T	G	8.188e^-4	0.867	UTR_3_PRIME hop DOWNSTREAM Pa1
2R	1743247	2R_1743247_DEL [dm3] 2R_5855742_DEL [dm6]	GACATGGGAGTCGGATTGG...	G	8.189e^-4	0.867	INTRON dpr12	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17837461	2R_17837461_SNP [dm3] 2R_21949956_SNP [dm6]	A	T	8.194e^-4	0.867	INTERGENIC
3L	13117793	3L_13117793_SNP [dm3] 3L_13124693_SNP [dm6]	T	C	8.194e^-4	0.867	INTERGENIC
2R	17238906	2R_17238906_SNP [dm3] 2R_21351401_SNP [dm6]	C	T	8.217e^-4	0.867	UPSTREAM CG17974 INTERGENIC
2L	7441997	2L_7441997_SNP [dm3] 2L_7441997_SNP [dm6]	A	T	8.244e^-4	0.867	INTRON CG5973
3R	2616217	3R_2616217_SNP [dm3] 3R_6790495_SNP [dm6]	C	T	8.331e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
2L	14046195	2L_14046195_SNP [dm3] 2L_14046195_SNP [dm6]	T	C	8.342e^-4	0.867	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
2R	11406323	2R_11406323_SNP [dm3] 2R_15518818_SNP [dm6]	C	T	8.343e^-4	0.867	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_chinmo
3L	10209504	3L_10209504_SNP [dm3] 3L_10216404_SNP [dm6]	C	T	8.364e^-4	0.867	SYNONYMOUS_CODING CG8065
3L	10209516	3L_10209516_SNP [dm3] 3L_10216416_SNP [dm6]	A	G	8.364e^-4	0.867	SYNONYMOUS_CODING CG8065
3L	11215253	3L_11215253_SNP [dm3] 3L_11222153_SNP [dm6]	C	G	8.364e^-4	0.867	INTRON CG42671
3L	12922845	3L_12922845_SNP [dm3] 3L_12929745_SNP [dm6]	G	A	8.364e^-4	0.867	INTERGENIC
3L	12922873	3L_12922873_SNP [dm3] 3L_12929773_SNP [dm6]	C	A	8.364e^-4	0.867	INTERGENIC	transposable element FlyBase
3L	5321936	3L_5321936_SNP [dm3] 3L_5328836_SNP [dm6]	C	T	8.364e^-4	0.867	INTERGENIC
3R	22079005	3R_22079005_SNP [dm3] 3R_26253283_SNP [dm6]	G	A	8.364e^-4	0.867	DOWNSTREAM CR42745 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2L	2772222	2L_2772222_DEL [dm3] 2L_2772222_DEL [dm6]	ATTTAA	A	8.388e^-4	0.867	UPSTREAM CG15399 DOWNSTREAM Syt1 INTERGENIC
2L	15232848	2L_15232848_SNP [dm3] 2L_15232848_SNP [dm6]	T	C	8.389e^-4	0.867	INTRON ZnT35C	TF binding site mE1_TFBS_cad
2L	16357385	2L_16357385_SNP [dm3] 2L_16357385_SNP [dm6]	C	T	8.389e^-4	0.867	UPSTREAM CaBP1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	17098739	2L_17098739_SNP [dm3] 2L_17098739_SNP [dm6]	G	A	8.389e^-4	0.867	INTERGENIC
2L	17098763	2L_17098763_SNP [dm3] 2L_17098763_SNP [dm6]	A	T	8.389e^-4	0.867	INTERGENIC
2L	20606048	2L_20606048_SNP [dm3] 2L_20606048_SNP [dm6]	A	T	8.389e^-4	0.867	DOWNSTREAM CR43608 INTRON CR44909
2R	10715027	2R_10715027_SNP [dm3] 2R_14827522_SNP [dm6]	G	T	8.389e^-4	0.867	INTERGENIC
2R	12877714	2R_12877714_SNP [dm3] 2R_16990209_SNP [dm6]	T	C	8.389e^-4	0.867	INTRON Cbp53E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13367322	2R_13367322_SNP [dm3] 2R_17479817_SNP [dm6]	C	T	8.389e^-4	0.867	SPLICE_SITE_REGION veil UTR_5_PRIME veil UTR_3_PRIME CG43110	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13761209	2R_13761209_SNP [dm3] 2R_17873704_SNP [dm6]	G	C	8.389e^-4	0.867	UPSTREAM Elk INTERGENIC
2R	15186546	2R_15186546_SNP [dm3] 2R_19299041_SNP [dm6]	C	A	8.389e^-4	0.867	INTRON Tab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15323061	2R_15323061_SNP [dm3] 2R_19435556_SNP [dm6]	T	G	8.389e^-4	0.867	SPLICE_SITE_REGION Fak INTRON Fak
2R	15323078	2R_15323078_SNP [dm3] 2R_19435573_SNP [dm6]	T	G	8.389e^-4	0.867	INTRON Fak
2R	15998487	2R_15998487_SNP [dm3] 2R_20110982_SNP [dm6]	T	A	8.389e^-4	0.867	UPSTREAM 18w INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2R	15998513	2R_15998513_SNP [dm3] 2R_20111008_SNP [dm6]	A	G	8.389e^-4	0.867	UPSTREAM 18w INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16416782	2R_16416782_SNP [dm3] 2R_20529277_SNP [dm6]	C	T	8.389e^-4	0.867	NON_SYNONYMOUS_CODING CG30151
2R	16416900	2R_16416900_SNP [dm3] 2R_20529395_SNP [dm6]	A	C	8.389e^-4	0.867	NON_SYNONYMOUS_CODING CG30151
2R	16872083	2R_16872083_SNP [dm3] 2R_20984578_SNP [dm6]	G	A	8.389e^-4	0.867	SYNONYMOUS_CODING CG15651 DOWNSTREAM CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17351257	2R_17351257_SNP [dm3] 2R_21463752_SNP [dm6]	T	G	8.389e^-4	0.867	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2R	18938603	2R_18938603_SNP [dm3] 2R_23051080_SNP [dm6]	A	T	8.389e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18938776	2R_18938776_SNP [dm3] 2R_23051253_SNP [dm6]	C	G	8.389e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18986674	2R_18986674_SNP [dm3] 2R_23099151_SNP [dm6]	A	G	8.389e^-4	0.867	DOWNSTREAM RpL37b INTERGENIC
2R	19299675	2R_19299675_SNP [dm3] 2R_23412152_SNP [dm6]	A	G	8.389e^-4	0.867	DOWNSTREAM CG9812 INTERGENIC
2R	19958004	2R_19958004_SNP [dm3] 2R_24070481_SNP [dm6]	C	A	8.389e^-4	0.867	INTRON CG3209	TF binding site mE1_TFBS_HSA
2R	54442	2R_54442_SNP [dm3] 2R_4166937_SNP [dm6]	G	T	8.389e^-4	0.867	INTERGENIC
2R	5819506	2R_5819506_SNP [dm3] 2R_9932001_SNP [dm6]	T	G	8.389e^-4	0.867	INTRON Mef2	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5826270	2R_5826270_SNP [dm3] 2R_9938765_SNP [dm6]	T	A	8.389e^-4	0.867	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	5904011	2R_5904011_SNP [dm3] 2R_10016506_SNP [dm6]	A	T	8.389e^-4	0.867	INTRON Pka-R2
2R	6646998	2R_6646998_SNP [dm3] 2R_10759493_SNP [dm6]	T	G	8.389e^-4	0.867	INTRON CG33144
2R	6719240	2R_6719240_SNP [dm3] 2R_10831735_SNP [dm6]	A	T	8.389e^-4	0.867	INTRON CG12344	TF binding site mE1_TFBS_inv
2R	8556691	2R_8556691_SNP [dm3] 2R_12669186_SNP [dm6]	T	A	8.389e^-4	0.867	INTRON nemy
2R	8556845	2R_8556845_SNP [dm3] 2R_12669340_SNP [dm6]	G	T	8.389e^-4	0.867	INTRON nemy
2R	9679824	2R_9679824_SNP [dm3] 2R_13792319_SNP [dm6]	T	C	8.389e^-4	0.867	EXON CR43811
2R	9679839	2R_9679839_SNP [dm3] 2R_13792334_SNP [dm6]	G	C	8.389e^-4	0.867	EXON CR43811
2R	9797171	2R_9797171_SNP [dm3] 2R_13909666_SNP [dm6]	G	A	8.389e^-4	0.867	INTRON shot
2R	9797441	2R_9797441_SNP [dm3] 2R_13909936_SNP [dm6]	T	C	8.389e^-4	0.867	INTRON shot
3L	11994495	3L_11994495_SNP [dm3] 3L_12001395_SNP [dm6]	A	G	8.389e^-4	0.867	UPSTREAM Pop2 INTRON Pop2	TF binding site mE1_TFBS_HSA
3L	12363284	3L_12363284_SNP [dm3] 3L_12370184_SNP [dm6]	G	A	8.389e^-4	0.867	INTRON Ncc69	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12589650	3L_12589650_SNP [dm3] 3L_12596550_SNP [dm6]	G	A	8.389e^-4	0.867	DOWNSTREAM ara INTERGENIC
3L	12589779	3L_12589779_SNP [dm3] 3L_12596679_SNP [dm6]	T	A	8.389e^-4	0.867	DOWNSTREAM ara INTERGENIC
3L	12589785	3L_12589785_SNP [dm3] 3L_12596685_SNP [dm6]	A	T	8.389e^-4	0.867	DOWNSTREAM ara INTERGENIC
3L	13561352	3L_13561352_SNP [dm3] 3L_13568252_SNP [dm6]	A	C	8.389e^-4	0.867	INTRON bru-3
3L	14525060	3L_14525060_SNP [dm3] 3L_14531960_SNP [dm6]	T	G	8.389e^-4	0.867	INTRON bbg
3L	15140552	3L_15140552_SNP [dm3] 3L_15147452_SNP [dm6]	C	T	8.389e^-4	0.867	INTRON FucTA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	15156869	3L_15156869_SNP [dm3] 3L_15163769_SNP [dm6]	G	A	8.389e^-4	0.867	UPSTREAM CG7011 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	1602729	3L_1602729_SNP [dm3] 3L_1602729_SNP [dm6]	C	T	8.389e^-4	0.867	UPSTREAM CG33791 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	1602871	3L_1602871_SNP [dm3] 3L_1602871_SNP [dm6]	G	A	8.389e^-4	0.867	UPSTREAM CG33791 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	1602886	3L_1602886_SNP [dm3] 3L_1602886_SNP [dm6]	T	C	8.389e^-4	0.867	UPSTREAM CG33791 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	1602889	3L_1602889_SNP [dm3] 3L_1602889_SNP [dm6]	A	G	8.389e^-4	0.867	UPSTREAM CG33791 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	1603436	3L_1603436_SNP [dm3] 3L_1603436_SNP [dm6]	C	T	8.389e^-4	0.867	UPSTREAM CG12104 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad
3L	1603550	3L_1603550_SNP [dm3] 3L_1603550_SNP [dm6]	G	C	8.389e^-4	0.867	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG12104	TF binding site mE1_TFBS_cad
3L	1603725	3L_1603725_SNP [dm3] 3L_1603725_SNP [dm6]	G	T	8.389e^-4	0.867	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
3L	16750079	3L_16750079_SNP [dm3] 3L_16756979_SNP [dm6]	T	C	8.389e^-4	0.867	INTERGENIC
3L	18083846	3L_18083846_SNP [dm3] 3L_18090746_SNP [dm6]	C	A	8.389e^-4	0.867	INTRON CG13698
3L	20338320	3L_20338320_SNP [dm3] 3L_20345220_SNP [dm6]	C	A	8.389e^-4	0.867	DOWNSTREAM Spn77Bc & 1 other EXON CR45385
3L	20338333	3L_20338333_SNP [dm3] 3L_20345233_SNP [dm6]	A	G	8.389e^-4	0.867	DOWNSTREAM Spn77Bc & 1 other EXON CR45385
3L	3096180	3L_3096180_SNP [dm3] 3L_3096180_SNP [dm6]	A	G	8.389e^-4	0.867	UPSTREAM tRNA:CR32287 & 1 other DOWNSTREAM tRNA:CR32288 & 2 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3096203	3L_3096203_SNP [dm3] 3L_3096203_SNP [dm6]	T	C	8.389e^-4	0.867	UPSTREAM tRNA:CR32287 & 1 other DOWNSTREAM tRNA:CR32288 & 2 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3096209	3L_3096209_SNP [dm3] 3L_3096209_SNP [dm6]	G	A	8.389e^-4	0.867	UPSTREAM tRNA:CR32287 & 1 other DOWNSTREAM tRNA:CR32288 & 2 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4600885	3L_4600885_SNP [dm3] 3L_4600885_SNP [dm6]	A	G	8.389e^-4	0.867	INTRON Src64B	TF binding site BDTNP1_TFBS_da
3L	5223530	3L_5223530_DEL [dm3] 3L_5230430_DEL [dm6]	CAGCAGC	C	8.389e^-4	0.867	INTRON shep
3L	5487140	3L_5487140_SNP [dm3] 3L_5494040_SNP [dm6]	T	G	8.389e^-4	0.867	EXON CR44520
3L	6495713	3L_6495713_SNP [dm3] 3L_6502613_SNP [dm6]	G	A	8.389e^-4	0.867	INTRON sfl
3L	6685582	3L_6685582_DEL [dm3] 3L_6692482_DEL [dm6]	CTATA	C	8.389e^-4	0.867	UTR_5_PRIME SP1173
3L	6685613	3L_6685613_SNP [dm3] 3L_6692513_SNP [dm6]	T	C	8.389e^-4	0.867	UTR_5_PRIME SP1173
3L	6685949	3L_6685949_SNP [dm3] 3L_6692849_SNP [dm6]	A	T	8.389e^-4	0.867	UPSTREAM SP1173 INTRON SP1173
3L	6695463	3L_6695463_SNP [dm3] 3L_6702363_SNP [dm6]	G	T	8.389e^-4	0.867	INTRON SP1173
3L	6695478	3L_6695478_SNP [dm3] 3L_6702378_SNP [dm6]	T	C	8.389e^-4	0.867	INTRON SP1173
3L	6697094	3L_6697094_SNP [dm3] 3L_6703994_SNP [dm6]	C	A	8.389e^-4	0.867	UPSTREAM SP1173 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6697118	3L_6697118_SNP [dm3] 3L_6704018_SNP [dm6]	T	A	8.389e^-4	0.867	UPSTREAM SP1173 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	680894	3L_680894_SNP [dm3] 3L_680894_SNP [dm6]	G	T	8.389e^-4	0.867	SYNONYMOUS_CODING CG3386 UPSTREAM CG17129	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad
3L	681042	3L_681042_SNP [dm3] 3L_681042_SNP [dm6]	G	C	8.389e^-4	0.867	NON_SYNONYMOUS_CODING CG3386 UPSTREAM CG17129	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
3L	681840	3L_681840_SNP [dm3] 3L_681840_SNP [dm6]	T	C	8.389e^-4	0.867	INTRON CG3386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	681983	3L_681983_SNP [dm3] 3L_681983_SNP [dm6]	A	G	8.389e^-4	0.867	UTR_5_PRIME CG3386 DOWNSTREAM ebd1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	682292	3L_682292_SNP [dm3] 3L_682292_SNP [dm6]	G	T	8.389e^-4	0.867	UTR_5_PRIME CG3386 UPSTREAM CG3386 DOWNSTREAM ebd1 INTRON CG3386	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	682592	3L_682592_INS [dm3] 3L_682592_INS [dm6]	G	GAGGT	8.389e^-4	0.867	UPSTREAM CG3386 DOWNSTREAM ebd1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	682715	3L_682715_SNP [dm3] 3L_682715_SNP [dm6]	A	T	8.389e^-4	0.867	UPSTREAM CG3386 DOWNSTREAM ebd1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	682754	3L_682754_SNP [dm3] 3L_682754_SNP [dm6]	C	T	8.389e^-4	0.867	UPSTREAM CG3386 DOWNSTREAM ebd1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	682829	3L_682829_DEL [dm3] 3L_682829_DEL [dm6]	TTAGC	A	8.389e^-4	0.867	UPSTREAM CG3386 DOWNSTREAM ebd1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	682852	3L_682852_SNP [dm3] 3L_682852_SNP [dm6]	T	A	8.389e^-4	0.867	UPSTREAM CG3386 DOWNSTREAM ebd1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	682872	3L_682872_SNP [dm3] 3L_682872_SNP [dm6]	T	A	8.389e^-4	0.867	UPSTREAM CG3386 DOWNSTREAM ebd1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	682916	3L_682916_SNP [dm3] 3L_682916_SNP [dm6]	A	C	8.389e^-4	0.867	UTR_3_PRIME ebd1 UPSTREAM CG3386	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	683279	3L_683279_SNP [dm3] 3L_683279_SNP [dm6]	C	G	8.389e^-4	0.867	NON_SYNONYMOUS_CODING ebd1 UPSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	683291	3L_683291_SNP [dm3] 3L_683291_SNP [dm6]	C	T	8.389e^-4	0.867	SYNONYMOUS_CODING ebd1 UPSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8071724	3L_8071724_SNP [dm3] 3L_8078624_SNP [dm6]	G	T	8.389e^-4	0.867	INTRON Ect4	TF binding site mE1_TFBS_Kr
3L	8071925	3L_8071925_SNP [dm3] 3L_8078825_SNP [dm6]	A	T	8.389e^-4	0.867	INTRON Ect4	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	8071926	3L_8071926_SNP [dm3] 3L_8078826_SNP [dm6]	A	T	8.389e^-4	0.867	INTRON Ect4	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	8072402	3L_8072402_SNP [dm3] 3L_8079302_SNP [dm6]	T	C	8.389e^-4	0.867	INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	8072763	3L_8072763_SNP [dm3] 3L_8079663_SNP [dm6]	C	T	8.389e^-4	0.867	INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	8269799	3L_8269799_SNP [dm3] 3L_8276699_SNP [dm6]	T	C	8.389e^-4	0.867	INTRON Dscam4
3L	8269806	3L_8269806_SNP [dm3] 3L_8276706_SNP [dm6]	T	C	8.389e^-4	0.867	INTRON Dscam4
3L	8269817	3L_8269817_SNP [dm3] 3L_8276717_SNP [dm6]	G	A	8.389e^-4	0.867	INTRON Dscam4
3L	8269825	3L_8269825_SNP [dm3] 3L_8276725_SNP [dm6]	G	A	8.389e^-4	0.867	INTRON Dscam4
3L	8269826	3L_8269826_SNP [dm3] 3L_8276726_SNP [dm6]	G	A	8.389e^-4	0.867	INTRON Dscam4
3L	8269852	3L_8269852_SNP [dm3] 3L_8276752_SNP [dm6]	A	G	8.389e^-4	0.867	INTRON Dscam4
3L	8269858	3L_8269858_SNP [dm3] 3L_8276758_SNP [dm6]	C	G	8.389e^-4	0.867	INTRON Dscam4
3L	8269860	3L_8269860_SNP [dm3] 3L_8276760_SNP [dm6]	C	T	8.389e^-4	0.867	INTRON Dscam4
3L	8862463	3L_8862463_SNP [dm3] 3L_8869363_SNP [dm6]	G	A	8.389e^-4	0.867	INTRON dally
3L	9028691	3L_9028691_SNP [dm3] 3L_9035591_SNP [dm6]	C	T	8.389e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9656684	3L_9656684_SNP [dm3] 3L_9663584_SNP [dm6]	T	G	8.389e^-4	0.867	INTRON fry	TF binding site mE1_TFBS_cad
X	11440798	X_11440798_SNP [dm3] X_11546765_SNP [dm6]	G	T	8.389e^-4	0.867	UPSTREAM mir-2492 INTRON Drak
X	11848043	X_11848043_SNP [dm3] X_11954010_SNP [dm6]	A	T	8.389e^-4	0.867	INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11896402	X_11896402_SNP [dm3] X_12002369_SNP [dm6]	A	T	8.389e^-4	0.867	UTR_5_PRIME fw UPSTREAM fw
X	13725586	X_13725586_SNP [dm3] X_13831553_SNP [dm6]	G	A	8.389e^-4	0.867	SYNONYMOUS_CODING AMPdeam UTR_3_PRIME AMPdeam
X	18990172	X_18990172_SNP [dm3] X_19096139_SNP [dm6]	T	C	8.389e^-4	0.867	INTERGENIC
X	19021188	X_19021188_SNP [dm3] X_19127155_SNP [dm6]	C	T	8.389e^-4	0.867	SYNONYMOUS_CODING tgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2402211	X_2402211_SNP [dm3] X_2508178_SNP [dm6]	G	A	8.389e^-4	0.867	INTRON trol
X	6131110	X_6131110_SNP [dm3] X_6237077_SNP [dm6]	A	C	8.389e^-4	0.867	UPSTREAM CG14445 DOWNSTREAM CG14446 INTERGENIC
X	6131116	X_6131116_SNP [dm3] X_6237083_SNP [dm6]	A	T	8.389e^-4	0.867	UPSTREAM CG14445 DOWNSTREAM CG14446 INTERGENIC
X	6131157	X_6131157_SNP [dm3] X_6237124_SNP [dm6]	T	G	8.389e^-4	0.867	UPSTREAM CG14445 DOWNSTREAM CG14446 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	6132990	X_6132990_SNP [dm3] X_6238957_SNP [dm6]	G	A	8.389e^-4	0.867	SYNONYMOUS_CODING CG14445
X	6474174	X_6474174_SNP [dm3] X_6580141_SNP [dm6]	A	G	8.389e^-4	0.867	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6864992	X_6864992_SNP [dm3] X_6970959_SNP [dm6]	T	G	8.389e^-4	0.867	SYNONYMOUS_CODING CG4586	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6865052	X_6865052_SNP [dm3] X_6971019_SNP [dm6]	A	G	8.389e^-4	0.867	INTRON CG4586	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6865077	X_6865077_SNP [dm3] X_6971044_SNP [dm6]	T	G	8.389e^-4	0.867	INTRON CG4586	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6865089	X_6865089_SNP [dm3] X_6971056_SNP [dm6]	C	T	8.389e^-4	0.867	INTRON CG4586	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8758667	X_8758667_SNP [dm3] X_8864634_SNP [dm6]	C	A	8.389e^-4	0.867	INTRON CG12075
X	9103197	X_9103197_SNP [dm3] X_9209164_SNP [dm6]	T	A	8.389e^-4	0.867	INTRON CG12119
X	9103244	X_9103244_SNP [dm3] X_9209211_SNP [dm6]	C	T	8.389e^-4	0.867	INTRON CG12119
X	9103245	X_9103245_SNP [dm3] X_9209212_SNP [dm6]	T	C	8.389e^-4	0.867	INTRON CG12119
X	9559045	X_9559045_SNP [dm3] X_9665012_SNP [dm6]	G	A	8.389e^-4	0.867	DOWNSTREAM nej INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9559223	X_9559223_SNP [dm3] X_9665190_SNP [dm6]	A	G	8.389e^-4	0.867	DOWNSTREAM nej INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5588335	2L_5588335_SNP [dm3] 2L_5588335_SNP [dm6]	A	G	8.390e^-4	0.867	UTR_5_PRIME CG7251
2R	11398765	2R_11398765_SNP [dm3] 2R_15511260_SNP [dm6]	A	T	8.404e^-4	0.867	UPSTREAM GalNAc-T1 INTERGENIC
2R	1664448	2R_1664448_INS [dm3] 2R_5776943_INS [dm6]	T	TGGCAACCT	8.426e^-4	0.867	INTRON ZnT41F
3R	19695598	3R_19695598_SNP [dm3] 3R_23869876_SNP [dm6]	G	A	8.481e^-4	0.867	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19695605	3R_19695605_DEL [dm3] 3R_23869883_DEL [dm6]	CATTAGAACACTTGTAC...	C	8.481e^-4	0.867	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19695639	3R_19695639_SNP [dm3] 3R_23869917_SNP [dm6]	A	T	8.481e^-4	0.867	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21676923	2L_21676923_SNP [dm3] 2L_21676923_SNP [dm6]	C	T	8.545e^-4	0.867	UPSTREAM CG2225 DOWNSTREAM EF2 INTRON CG2225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	16637988	2R_16637988_SNP [dm3] 2R_20750483_SNP [dm6]	A	C	8.574e^-4	0.867	UPSTREAM CG34201 DOWNSTREAM dpr INTERGENIC
3R	22726303	3R_22726303_SNP [dm3] 3R_26900581_SNP [dm6]	A	G	8.606e^-4	0.867	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	25335444	3R_25335444_SNP [dm3] 3R_29509722_SNP [dm6]	C	T	8.606e^-4	0.867	INTERGENIC
2R	453926	2R_453926_DEL [dm3] 2R_4566421_DEL [dm6]	GCACAAACGGCTTAGTAAAT...	G	8.628e^-4	0.867	INTERGENIC	transposable element FlyBase
2L	20605640	2L_20605640_SNP [dm3] 2L_20605640_SNP [dm6]	G	A	8.641e^-4	0.867	INTRON CR44909
2R	7451050	2R_7451050_SNP [dm3] 2R_11563545_SNP [dm6]	G	C	8.696e^-4	0.867	INTERGENIC
2R	1722016	2R_1722016_SNP [dm3] 2R_5834511_SNP [dm6]	A	G	8.711e^-4	0.867	INTRON dpr12
3L	5689019	3L_5689019_SNP [dm3] 3L_5695919_SNP [dm6]	A	T	8.725e^-4	0.867	UTR_5_PRIME sif INTRON sif	TF binding site mE1_TFBS_chinmo
2L	18177352	2L_18177352_SNP [dm3] 2L_18177352_SNP [dm6]	A	G	8.743e^-4	0.867	INTRON CG42750
2R	5130628	2R_5130628_SNP [dm3] 2R_9243123_SNP [dm6]	C	T	8.743e^-4	0.867	SYNONYMOUS_CODING Cyp4p3 DOWNSTREAM Cyp4p1 INTRON hig
3L	995303	3L_995303_SNP [dm3] 3L_995303_SNP [dm6]	C	T	8.758e^-4	0.867	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
3L	11215279	3L_11215279_SNP [dm3] 3L_11222179_SNP [dm6]	T	C	8.782e^-4	0.867	INTRON CG42671
X	6542235	X_6542235_SNP [dm3] X_6648202_SNP [dm6]	G	A	8.829e^-4	0.867	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	20398296	2R_20398296_SNP [dm3] 2R_24510773_SNP [dm6]	A	G	8.839e^-4	0.867	SYNONYMOUS_CODING Letm1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20398368	2R_20398368_SNP [dm3] 2R_24510845_SNP [dm6]	T	C	8.839e^-4	0.867	INTRON Letm1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8539514	X_8539514_SNP [dm3] X_8645481_SNP [dm6]	C	A	8.877e^-4	0.867	INTRON oc
3L	14293269	3L_14293269_SNP [dm3] 3L_14300169_SNP [dm6]	G	T	8.889e^-4	0.867	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	8392650	2R_8392650_SNP [dm3] 2R_12505145_SNP [dm6]	G	A	8.903e^-4	0.867	UPSTREAM fdl INTRON fdl
3L	21653551	3L_21653551_SNP [dm3] 3L_21660451_SNP [dm6]	A	T	8.958e^-4	0.867	INTRON CG43980
3L	21653553	3L_21653553_SNP [dm3] 3L_21660453_SNP [dm6]	T	A	8.958e^-4	0.867	INTRON CG43980
2R	2443879	2R_2443879_SNP [dm3] 2R_6556374_SNP [dm6]	G	A	8.983e^-4	0.867	INTRON jing
2L	12150412	2L_12150412_SNP [dm3] 2L_12150412_SNP [dm6]	A	G	9.000e^-4	0.867	INTRON CG31760
3L	21292281	3L_21292281_SNP [dm3] 3L_21299181_SNP [dm6]	T	C	9.003e^-4	0.867	DOWNSTREAM CG43702 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13175540	X_13175540_SNP [dm3] X_13281507_SNP [dm6]	C	T	9.005e^-4	0.867	INTRON HDAC4
2L	9112706	2L_9112706_SNP [dm3] 2L_9112706_SNP [dm6]	T	C	9.022e^-4	0.867	SYNONYMOUS_CODING Or30a
2R	3264712	2R_3264712_SNP [dm3] 2R_7377207_SNP [dm6]	T	A	9.035e^-4	0.867	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14656902	3L_14656902_SNP [dm3] 3L_14663802_SNP [dm6]	A	T	9.043e^-4	0.867	INTRON dlp
X	14010945	X_14010945_SNP [dm3] X_14116912_SNP [dm6]	T	G	9.043e^-4	0.867	DOWNSTREAM tRNA:S7:12Eg & 1 other INTERGENIC
X	14010974	X_14010974_SNP [dm3] X_14116941_SNP [dm6]	T	C	9.043e^-4	0.867	DOWNSTREAM tRNA:S7:12Eg & 1 other INTERGENIC
X	22120737	X_22120737_SNP [dm3] X_22718901_SNP [dm6]	A	G	9.043e^-4	0.867	INTRON CR44997
2R	12493036	2R_12493036_SNP [dm3] 2R_16605531_SNP [dm6]	C	T	9.043e^-4	0.867	INTERGENIC
2R	14551634	2R_14551634_SNP [dm3] 2R_18664129_SNP [dm6]	T	C	9.043e^-4	0.867	DOWNSTREAM CG33136 INTERGENIC
2R	14551635	2R_14551635_SNP [dm3] 2R_18664130_SNP [dm6]	A	T	9.043e^-4	0.867	DOWNSTREAM CG33136 INTERGENIC
2R	17141303	2R_17141303_SNP [dm3] 2R_21253798_SNP [dm6]	T	C	9.043e^-4	0.867	INTERGENIC
2R	17727907	2R_17727907_SNP [dm3] 2R_21840402_SNP [dm6]	C	T	9.043e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17727920	2R_17727920_SNP [dm3] 2R_21840415_SNP [dm6]	G	A	9.043e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17727925	2R_17727925_SNP [dm3] 2R_21840420_SNP [dm6]	G	C	9.043e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17727938	2R_17727938_SNP [dm3] 2R_21840433_SNP [dm6]	A	G	9.043e^-4	0.867	INTERGENIC
2R	17727956	2R_17727956_SNP [dm3] 2R_21840451_SNP [dm6]	C	A	9.043e^-4	0.867	INTERGENIC
2R	18357921	2R_18357921_SNP [dm3] 2R_22470416_SNP [dm6]	T	A	9.043e^-4	0.867	INTRON CG10384	TF binding site mE1_TFBS_chinmo
2R	8184039	2R_8184039_SNP [dm3] 2R_12296534_SNP [dm6]	C	T	9.043e^-4	0.867	INTRON CG42700 EXON CR45271	TF binding site mE1_TFBS_chinmo
2R	8188660	2R_8188660_SNP [dm3] 2R_12301155_SNP [dm6]	G	T	9.043e^-4	0.867	UTR_5_PRIME CG8850 DOWNSTREAM CG42700 INTRON CG8850
2R	8188903	2R_8188903_SNP [dm3] 2R_12301398_SNP [dm6]	G	T	9.043e^-4	0.867	DOWNSTREAM CG42700 INTRON CG8850
2R	8207708	2R_8207708_SNP [dm3] 2R_12320203_SNP [dm6]	C	G	9.043e^-4	0.867	DOWNSTREAM CR44316 INTERGENIC
2R	8229936	2R_8229936_SNP [dm3] 2R_12342431_SNP [dm6]	T	A	9.043e^-4	0.867	UPSTREAM CG8839 INTRON CG8839
2R	8230773	2R_8230773_SNP [dm3] 2R_12343268_SNP [dm6]	A	T	9.043e^-4	0.867	INTRON CG8839	TF binding site BDTNP1_TFBS_dl
2R	8233119	2R_8233119_SNP [dm3] 2R_12345614_SNP [dm6]	T	C	9.043e^-4	0.867	NON_SYNONYMOUS_CODING ana3 UPSTREAM CG8839	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	8235282	2R_8235282_SNP [dm3] 2R_12347777_SNP [dm6]	C	T	9.043e^-4	0.867	SYNONYMOUS_CODING ana3	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8239538	2R_8239538_SNP [dm3] 2R_12352033_SNP [dm6]	G	T	9.043e^-4	0.867	SYNONYMOUS_CODING CG30047 DOWNSTREAM ana3	TF binding site BDTNP1_TFBS_prd
2R	8282208	2R_8282208_SNP [dm3] 2R_12394703_SNP [dm6]	C	T	9.043e^-4	0.867	SYNONYMOUS_CODING Or49a UPSTREAM CG30048
2R	8282214	2R_8282214_SNP [dm3] 2R_12394709_SNP [dm6]	C	A	9.043e^-4	0.867	SYNONYMOUS_CODING Or49a UPSTREAM CG30048
2R	8383803	2R_8383803_SNP [dm3] 2R_12496298_SNP [dm6]	G	A	9.043e^-4	0.867	INTRON fdl & 1 other
2R	8938902	2R_8938902_SNP [dm3] 2R_13051397_SNP [dm6]	T	G	9.043e^-4	0.867	INTERGENIC
3L	1949857	3L_1949857_SNP [dm3] 3L_1949857_SNP [dm6]	A	G	9.043e^-4	0.867	NON_SYNONYMOUS_CODING Cnb DOWNSTREAM mv
3L	6745709	3L_6745709_SNP [dm3] 3L_6752609_SNP [dm6]	T	A	9.043e^-4	0.867	UTR_5_PRIME velo UPSTREAM CG8549	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
X	17548337	X_17548337_SNP [dm3] X_17654304_SNP [dm6]	C	T	9.043e^-4	0.867	SYNONYMOUS_CODING IntS2	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17548679	X_17548679_SNP [dm3] X_17654646_SNP [dm6]	G	A	9.043e^-4	0.867	SYNONYMOUS_CODING IntS2	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2596970	X_2596970_SNP [dm3] X_2702937_SNP [dm6]	T	A	9.043e^-4	0.867	INTRON Csat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2596979	X_2596979_SNP [dm3] X_2702946_SNP [dm6]	C	T	9.043e^-4	0.867	INTRON Csat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15203409	3L_15203409_SNP [dm3] 3L_15210309_SNP [dm6]	G	A	9.070e^-4	0.867	INTERGENIC
2R	80317	2R_80317_SNP [dm3] 2R_4192812_SNP [dm6]	G	C	9.106e^-4	0.867	INTERGENIC
2L	20890626	2L_20890626_SNP [dm3] 2L_20890626_SNP [dm6]	A	G	9.152e^-4	0.867	UPSTREAM sky INTRON sky & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1361139	2L_1361139_SNP [dm3] 2L_1361139_SNP [dm6]	T	G	9.162e^-4	0.867	INTRON NLaz
2L	1361142	2L_1361142_SNP [dm3] 2L_1361142_SNP [dm6]	A	C	9.162e^-4	0.867	INTRON NLaz
3L	993273	3L_993273_SNP [dm3] 3L_993273_SNP [dm6]	T	G	9.186e^-4	0.867	UTR_3_PRIME Glut1 UPSTREAM CG12038
3L	7027538	3L_7027538_SNP [dm3] 3L_7034438_SNP [dm6]	A	C	9.212e^-4	0.867	INTRON Mp
2L	6449927	2L_6449927_SNP [dm3] 2L_6449927_SNP [dm6]	G	A	9.284e^-4	0.867	SYNONYMOUS_CODING retm
3L	12850567	3L_12850567_SNP [dm3] 3L_12857467_SNP [dm6]	A	T	9.294e^-4	0.867	UTR_3_PRIME CG32107 DOWNSTREAM Ent3	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	7928120	2R_7928120_SNP [dm3] 2R_12040615_SNP [dm6]	A	G	9.380e^-4	0.867	SYNONYMOUS_CODING RpIII128	TF binding site mE1_TFBS_sens
3L	9435286	3L_9435286_SNP [dm3] 3L_9442186_SNP [dm6]	A	T	9.380e^-4	0.867	UTR_5_PRIME Nf-YA & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	20511801	X_20511801_INS [dm3] X_20640774_INS [dm6]	G	GGG	9.393e^-4	0.867	INTERGENIC
2R	448451	2R_448451_DEL [dm3] 2R_4560946_DEL [dm6]	CGTCTTC	C	9.432e^-4	0.867	INTRON Stlk
2R	11348157	2R_11348157_DEL [dm3] 2R_15460652_DEL [dm6]	AAGTTA	A	9.450e^-4	0.867	INTRON CG43729
2L	11881291	2L_11881291_SNP [dm3] 2L_11881291_SNP [dm6]	G	T	9.548e^-4	0.867	INTRON Pde1c	TF binding site mE1_TFBS_inv
2R	14268556	2R_14268556_SNP [dm3] 2R_18381051_SNP [dm6]	T	C	9.577e^-4	0.867	DOWNSTREAM CG43202 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1520522	3L_1520522_SNP [dm3] 3L_1520522_SNP [dm6]	T	C	9.577e^-4	0.867	SYNONYMOUS_CODING Psa	TF binding site mE1_TFBS_cad
3L	1520582	3L_1520582_SNP [dm3] 3L_1520582_SNP [dm6]	G	C	9.577e^-4	0.867	SYNONYMOUS_CODING Psa	TF binding site mE1_TFBS_cad
2L	9611241	2L_9611241_SNP [dm3] 2L_9611241_SNP [dm6]	C	A	9.588e^-4	0.867	SYNONYMOUS_CODING gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	4921546	2R_4921546_SNP [dm3] 2R_9034041_SNP [dm6]	G	A	9.588e^-4	0.867	INTERGENIC
2R	5150345	2R_5150345_SNP [dm3] 2R_9262840_SNP [dm6]	C	A	9.588e^-4	0.867	NON_SYNONYMOUS_CODING CG34141 INTRON Pkn	TF binding site mE1_TFBS_cad
2R	5827725	2R_5827725_SNP [dm3] 2R_9940220_SNP [dm6]	A	G	9.588e^-4	0.867	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	18849746	3L_18849746_SNP [dm3] 3L_18856646_SNP [dm6]	T	A	9.588e^-4	0.867	UPSTREAM CR45388 INTERGENIC
3L	2411613	3L_2411613_SNP [dm3] 3L_2411613_SNP [dm6]	G	A	9.588e^-4	0.867	UPSTREAM CG45186 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6999930	3L_6999930_SNP [dm3] 3L_7006830_SNP [dm6]	A	G	9.588e^-4	0.867	INTRON Mp
X	16466436	X_16466436_SNP [dm3] X_16572403_SNP [dm6]	G	T	9.588e^-4	0.867	INTRON CanA-14F
3L	18572267	3L_18572267_SNP [dm3] 3L_18579167_SNP [dm6]	G	A	9.641e^-4	0.867	INTERGENIC
3R	11456031	3R_11456031_SNP [dm3] 3R_15630309_SNP [dm6]	T	A	9.650e^-4	0.867	INTERGENIC
X	918783	X_918783_SNP [dm3] X_1024750_SNP [dm6]	C	A	9.650e^-4	0.867	INTRON su_w[a]_ & 2 others
X	17147022	X_17147022_SNP [dm3] X_17252989_SNP [dm6]	C	T	9.665e^-4	0.867	INTRON f	TF binding site BDTNP1_TFBS_twi
2L	16608855	2L_16608855_SNP [dm3] 2L_16608855_SNP [dm6]	C	A	9.677e^-4	0.867	NON_SYNONYMOUS_CODING CG4631 INTRON CG42389
3L	7098260	3L_7098260_SNP [dm3] 3L_7105160_SNP [dm6]	T	A	9.678e^-4	0.867	INTRON form3
2L	19075570	2L_19075570_SNP [dm3] 2L_19075570_SNP [dm6]	A	G	9.691e^-4	0.867	UPSTREAM CR33315 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9282892	3L_9282892_SNP [dm3] 3L_9289792_SNP [dm6]	T	G	9.761e^-4	0.867	INTERGENIC
2R	14492562	2R_14492562_SNP [dm3] 2R_18605057_SNP [dm6]	C	A	9.782e^-4	0.867	INTRON GEFmeso
3L	4700295	3L_4700295_SNP [dm3] 3L_4700295_SNP [dm6]	G	A	9.782e^-4	0.867	INTRON RhoGEF64C
3L	15920646	3L_15920646_SNP [dm3] 3L_15927546_SNP [dm6]	C	T	9.808e^-4	0.867	INTRON Pka-C3
2L	20864528	2L_20864528_SNP [dm3] 2L_20864528_SNP [dm6]	A	T	9.835e^-4	0.867	UPSTREAM CR9337 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	17358914	2L_17358914_SNP [dm3] 2L_17358914_SNP [dm6]	A	C	9.848e^-4	0.867	INTERGENIC
3L	7728262	3L_7728262_DEL [dm3] 3L_7735162_DEL [dm6]	AA	A	9.861e^-4	0.867	INTRON CG32373 & 1 other
X	13967749	X_13967749_SNP [dm3] X_14073716_SNP [dm6]	C	T	9.886e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13691176	3R_13691176_SNP [dm3] 3R_17865454_SNP [dm6]	T	C	9.893e^-4	0.867	SYNONYMOUS_CODING tinc	TF binding site mE1_TFBS_inv
3R	14223846	3R_14223846_DEL [dm3] 3R_18398124_DEL [dm6]	GG	T	9.893e^-4	0.867	INTRON Vha100-2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	2859869	3R_2859869_DEL [dm3] 3R_7034147_DEL [dm6]	CC	C	9.893e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17604215	2L_17604215_SNP [dm3] 2L_17604215_SNP [dm6]	G	A	9.920e^-4	0.867	UTR_3_PRIME Sytalpha DOWNSTREAM Sytalpha
2R	131231	2R_131231_SNP [dm3] 2R_4243726_SNP [dm6]	A	C	9.975e^-4	0.867	UPSTREAM IntS3 INTERGENIC
2R	480614	2R_480614_SNP [dm3] 2R_4593109_SNP [dm6]	C	G	9.975e^-4	0.867	INTERGENIC	transposable element FlyBase

By genomic position
Variant impact
Gene name

RepOutput_Day12 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results