DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.694e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.06537

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	2.7143	0.0995

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

962 significant hits at p-value < 0.001.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	10268784	2L_10268784_SNP [dm3] 2L_10268784_SNP [dm6]	T	A	7.768e^-6	0.846	UPSTREAM CG4957 DOWNSTREAM CG4953 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	226835	2L_226835_SNP [dm3] 2L_226835_SNP [dm6]	T	C	1.110e^-5	0.846	INTRON kis
X	7079117	X_7079117_INS [dm3] X_7185084_INS [dm6]	G	GTG	1.110e^-5	0.846	INTRON CG9650 & 1 other
2L	14786577	2L_14786577_DEL [dm3] 2L_14786577_DEL [dm6]	TGATACTTTT	T	1.228e^-5	0.846	INTERGENIC
2L	14786590	2L_14786590_SNP [dm3] 2L_14786590_SNP [dm6]	T	G	1.228e^-5	0.846	INTERGENIC
2L	14786591	2L_14786591_SNP [dm3] 2L_14786591_SNP [dm6]	T	G	1.228e^-5	0.846	INTERGENIC
2L	17254881	2L_17254881_SNP [dm3] 2L_17254881_SNP [dm6]	G	T	1.228e^-5	0.846	INTRON beat-IIIc
3R	25810994	3R_25810994_SNP [dm3] 3R_29985272_SNP [dm6]	C	A	2.749e^-5	0.846	INTRON CG7896	TF binding site mE1_TFBS_cad
3R	6960166	3R_6960166_SNP [dm3] 3R_11134444_SNP [dm6]	G	T	2.749e^-5	0.846	INTERGENIC
2L	225718	2L_225718_SNP [dm3] 2L_225718_SNP [dm6]	T	A	3.106e^-5	0.846	INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20977818	2R_20977818_DEL [dm3] 2R_25090295_DEL [dm6]	AA	A	3.328e^-5	0.846	INTRON lov	transposable element FlyBase
3R	6960171	3R_6960171_SNP [dm3] 3R_11134449_SNP [dm6]	T	A	3.502e^-5	0.846	INTERGENIC
3R	6960173	3R_6960173_SNP [dm3] 3R_11134451_SNP [dm6]	T	C	3.502e^-5	0.846	INTERGENIC
3R	6960185	3R_6960185_SNP [dm3] 3R_11134463_SNP [dm6]	A	G	3.502e^-5	0.846	INTERGENIC
3R	6960194	3R_6960194_SNP [dm3] 3R_11134472_SNP [dm6]	A	C	3.502e^-5	0.846	INTERGENIC
2R	17094655	2R_17094655_SNP [dm3] 2R_21207150_SNP [dm6]	C	T	3.588e^-5	0.846	NON_SYNONYMOUS_CODING Glycogenin INTRON CG44245 & 1 other
2L	9571290	2L_9571290_SNP [dm3] 2L_9571290_SNP [dm6]	A	C	3.705e^-5	0.846	START_GAINED CG3838 UTR_5_PRIME CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_dl
2L	9573156	2L_9573156_SNP [dm3] 2L_9573156_SNP [dm6]	C	T	3.705e^-5	0.846	UTR_3_PRIME CG3838 DOWNSTREAM Mtpalpha
2R	17587284	2R_17587284_SNP [dm3] 2R_21699779_SNP [dm6]	G	A	3.705e^-5	0.846	INTRON HmgZ
X	10702282	X_10702282_INS [dm3] X_10808249_INS [dm6]	C	CACTTTCTTTTCGTTTTGGC...	3.705e^-5	0.846	INTRON Imp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	16523231	X_16523231_SNP [dm3] X_16629198_SNP [dm6]	T	G	3.705e^-5	0.846	SYNONYMOUS_CODING Rok	TF binding site mE1_TFBS_chinmo
X	16523453	X_16523453_SNP [dm3] X_16629420_SNP [dm6]	T	C	3.705e^-5	0.846	SYNONYMOUS_CODING Rok	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7637860	2L_7637860_SNP [dm3] 2L_7637860_SNP [dm6]	G	T	4.076e^-5	0.846	DOWNSTREAM CR44800 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	7637861	2L_7637861_SNP [dm3] 2L_7637861_SNP [dm6]	G	T	4.076e^-5	0.846	DOWNSTREAM CR44800 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	485731	3L_485731_SNP [dm3] 3L_485731_SNP [dm6]	C	G	4.100e^-5	0.846	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11693039	3L_11693039_DEL [dm3] 3L_11699939_DEL [dm6]	AGGA	A	4.335e^-5	0.846	UTR_3_PRIME CG11658 UPSTREAM CG6053 DOWNSTREAM CG11658
X	21281649	X_21281649_SNP [dm3] X_21410622_SNP [dm6]	A	T	4.943e^-5	0.846	UPSTREAM CR45003 INTERGENIC
3L	7719686	3L_7719686_SNP [dm3] 3L_7726586_SNP [dm6]	G	A	5.610e^-5	0.846	UPSTREAM CG7457 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17088352	3R_17088352_SNP [dm3] 3R_21262630_SNP [dm6]	T	G	5.617e^-5	0.846	SYNONYMOUS_CODING ETHR INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17299720	2R_17299720_SNP [dm3] 2R_21412215_SNP [dm6]	G	T	6.180e^-5	0.846	INTRON Sdc	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17806402	2R_17806402_SNP [dm3] 2R_21918897_SNP [dm6]	T	C	6.472e^-5	0.846	INTRON Fili
3R	21061664	3R_21061664_SNP [dm3] 3R_25235942_SNP [dm6]	G	A	6.620e^-5	0.846	UPSTREAM CG10420 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10355750	3L_10355750_SNP [dm3] 3L_10362650_SNP [dm6]	T	C	6.889e^-5	0.846	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10355803	3L_10355803_SNP [dm3] 3L_10362703_SNP [dm6]	C	T	6.889e^-5	0.846	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11531845	3L_11531845_SNP [dm3] 3L_11538745_SNP [dm6]	T	C	6.889e^-5	0.846	INTRON Mob2
3L	13254530	3L_13254530_DEL [dm3] 3L_13261430_DEL [dm6]	TAG	T	6.889e^-5	0.846	INTRON caps
3L	1422679	3L_1422679_SNP [dm3] 3L_1422679_SNP [dm6]	C	A	6.889e^-5	0.846	NON_SYNONYMOUS_CODING CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5185782	3L_5185782_SNP [dm3] 3L_5192682_SNP [dm6]	C	T	6.889e^-5	0.846	INTRON shep
3L	8729191	3L_8729191_SNP [dm3] 3L_8736091_SNP [dm6]	C	T	6.889e^-5	0.846	DOWNSTREAM Prm INTRON Prm	TF binding site mE1_TFBS_inv
3L	8729201	3L_8729201_SNP [dm3] 3L_8736101_SNP [dm6]	A	T	6.889e^-5	0.846	DOWNSTREAM Prm INTRON Prm	TF binding site mE1_TFBS_inv
X	4942739	X_4942739_SNP [dm3] X_5048706_SNP [dm6]	T	A	6.889e^-5	0.846	UTR_5_PRIME ovo INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	7728262	3L_7728262_DEL [dm3] 3L_7735162_DEL [dm6]	AA	A	6.926e^-5	0.846	INTRON CG32373 & 1 other
3L	2530442	3L_2530442_INS [dm3] 3L_2530442_INS [dm6]	T	TT	6.948e^-5	0.846	INTRON Spn
3R	5224115	3R_5224115_SNP [dm3] 3R_9398393_SNP [dm6]	C	T	7.040e^-5	0.846	SYNONYMOUS_CODING Or85f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_sens
3R	5224118	3R_5224118_SNP [dm3] 3R_9398396_SNP [dm6]	T	C	7.040e^-5	0.846	SYNONYMOUS_CODING Or85f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_sens
3R	5224121	3R_5224121_SNP [dm3] 3R_9398399_SNP [dm6]	T	G	7.040e^-5	0.846	SYNONYMOUS_CODING Or85f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_sens
X	2565297	X_2565297_SNP [dm3] X_2671264_SNP [dm6]	G	C	7.844e^-5	0.846	INTRON sgg
3L	485585	3L_485585_SNP [dm3] 3L_485585_SNP [dm6]	T	C	7.881e^-5	0.846	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	485591	3L_485591_SNP [dm3] 3L_485591_SNP [dm6]	T	C	7.881e^-5	0.846	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	485597	3L_485597_SNP [dm3] 3L_485597_SNP [dm6]	A	C	7.881e^-5	0.846	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	485628	3L_485628_SNP [dm3] 3L_485628_SNP [dm6]	C	A	7.881e^-5	0.846	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18551761	3L_18551761_SNP [dm3] 3L_18558661_SNP [dm6]	T	A	8.003e^-5	0.846	INTERGENIC
2R	11068421	2R_11068421_SNP [dm3] 2R_15180916_SNP [dm6]	C	A	8.274e^-5	0.846	INTRON igl
3R	6960180	3R_6960180_SNP [dm3] 3R_11134458_SNP [dm6]	C	A	8.274e^-5	0.846	INTERGENIC
3L	9867885	3L_9867885_SNP [dm3] 3L_9874785_SNP [dm6]	T	C	8.344e^-5	0.846	UPSTREAM CR45406 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19809547	3R_19809547_SNP [dm3] 3R_23983825_SNP [dm6]	A	G	8.344e^-5	0.846	DOWNSTREAM CG31140 EXON CR31451
3R	26279792	3R_26279792_SNP [dm3] 3R_30454070_SNP [dm6]	C	G	8.711e^-5	0.846	UPSTREAM aralar1 INTRON aralar1
X	8989142	X_8989142_SNP [dm3] X_9095109_SNP [dm6]	T	G	8.807e^-5	0.846	SYNONYMOUS_CODING CG7766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21675754	3R_21675754_SNP [dm3] 3R_25850032_SNP [dm6]	A	C	9.273e^-5	0.846	DOWNSTREAM CG14545 INTERGENIC
2R	18248965	2R_18248965_SNP [dm3] 2R_22361460_SNP [dm6]	C	A	9.451e^-5	0.846	INTRON Liprin-gamma
2R	17347287	2R_17347287_SNP [dm3] 2R_21459782_SNP [dm6]	C	T	9.782e^-5	0.846	INTRON Sdc
2R	17347371	2R_17347371_SNP [dm3] 2R_21459866_SNP [dm6]	A	G	9.782e^-5	0.846	INTRON Sdc
3L	5689555	3L_5689555_SNP [dm3] 3L_5696455_SNP [dm6]	G	C	9.875e^-5	0.846	UTR_5_PRIME sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3135190	2L_3135190_SNP [dm3] 2L_3135190_SNP [dm6]	G	T	9.922e^-5	0.846	INTRON toc
2R	12491011	2R_12491011_SNP [dm3] 2R_16603506_SNP [dm6]	G	C	9.929e^-5	0.846	INTRON CG8303	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16001587	2L_16001587_SNP [dm3] 2L_16001587_SNP [dm6]	A	T	9.936e^-5	0.846	UPSTREAM CR43825 INTRON beat-Ic
2R	19548138	2R_19548138_SNP [dm3] 2R_23660615_SNP [dm6]	A	G	1.006e^-4	0.846	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	15508400	2L_15508400_SNP [dm3] 2L_15508400_SNP [dm6]	C	T	1.008e^-4	0.846	INTERGENIC
2R	18647404	2R_18647404_SNP [dm3] 2R_22759899_SNP [dm6]	C	T	1.016e^-4	0.846	NON_SYNONYMOUS_CODING CG42260 DOWNSTREAM CR30267 INTRON CG42260	TF binding site mE1_TFBS_cad
3L	486221	3L_486221_SNP [dm3] 3L_486221_SNP [dm6]	T	C	1.064e^-4	0.846	INTRON klar	TF binding site BDTNP1_TFBS_dl
2R	8410694	2R_8410694_SNP [dm3] 2R_12523189_SNP [dm6]	A	T	1.097e^-4	0.846	DOWNSTREAM CG33632 INTERGENIC
3L	7719704	3L_7719704_SNP [dm3] 3L_7726604_SNP [dm6]	G	A	1.097e^-4	0.846	UPSTREAM CG7457 INTRON CG32373	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7719709	3L_7719709_SNP [dm3] 3L_7726609_SNP [dm6]	T	G	1.097e^-4	0.846	UPSTREAM CG7457 INTRON CG32373	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7719725	3L_7719725_SNP [dm3] 3L_7726625_SNP [dm6]	C	T	1.097e^-4	0.846	UPSTREAM CG7457 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25228600	3R_25228600_SNP [dm3] 3R_29402878_SNP [dm6]	C	T	1.098e^-4	0.846	INTRON Ptp99A
3L	1251883	3L_1251883_SNP [dm3] 3L_1251883_SNP [dm6]	G	T	1.163e^-4	0.846	UPSTREAM CG9130 & 1 other DOWNSTREAM CG9129 INTERGENIC
3L	18552766	3L_18552766_SNP [dm3] 3L_18559666_SNP [dm6]	A	T	1.186e^-4	0.846	UPSTREAM AstC-R1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18552768	3L_18552768_SNP [dm3] 3L_18559668_SNP [dm6]	T	A	1.186e^-4	0.846	UPSTREAM AstC-R1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15817326	2R_15817326_SNP [dm3] 2R_19929821_SNP [dm6]	T	G	1.234e^-4	0.846	INTERGENIC
2L	17118024	2L_17118024_SNP [dm3] 2L_17118024_SNP [dm6]	C	T	1.250e^-4	0.846	INTERGENIC
3L	10454900	3L_10454900_SNP [dm3] 3L_10461800_SNP [dm6]	T	G	1.250e^-4	0.846	NON_SYNONYMOUS_CODING Gem3
3L	485649	3L_485649_SNP [dm3] 3L_485649_SNP [dm6]	C	T	1.260e^-4	0.846	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5055592	X_5055592_SNP [dm3] X_5161559_SNP [dm6]	A	T	1.279e^-4	0.846	INTRON rg & 1 other
2L	17342909	2L_17342909_SNP [dm3] 2L_17342909_SNP [dm6]	T	C	1.308e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21675747	3R_21675747_SNP [dm3] 3R_25850025_SNP [dm6]	A	C	1.320e^-4	0.846	DOWNSTREAM CG14545 INTERGENIC
2L	20861770	2L_20861770_SNP [dm3] 2L_20861770_SNP [dm6]	A	G	1.325e^-4	0.846	DOWNSTREAM CG9336 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	10322824	3L_10322824_SNP [dm3] 3L_10329724_SNP [dm6]	A	G	1.348e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Kr
3L	520406	3L_520406_INS [dm3] 3L_520406_INS [dm6]	T	TAAGGT	1.393e^-4	0.846	INTRON klar	TF binding site mE1_TFBS_HSA
3R	16199082	3R_16199082_SNP [dm3] 3R_20373360_SNP [dm6]	T	C	1.495e^-4	0.846	INTERGENIC
X	5672866	X_5672866_SNP [dm3] X_5778833_SNP [dm6]	G	T	1.495e^-4	0.846	INTRON CG42699 & 1 other
2R	11178065	2R_11178065_SNP [dm3] 2R_15290560_SNP [dm6]	T	A	1.515e^-4	0.846	INTRON Trpm
2L	2092051	2L_2092051_SNP [dm3] 2L_2092051_SNP [dm6]	G	A	1.557e^-4	0.846	INTRON dpr3
2L	19723182	2L_19723182_SNP [dm3] 2L_19723182_SNP [dm6]	G	A	1.573e^-4	0.846	INTRON Lar
2R	18670585	2R_18670585_SNP [dm3] 2R_22783080_SNP [dm6]	G	T	1.612e^-4	0.846	INTRON CG42260
3L	7752392	3L_7752392_SNP [dm3] 3L_7759292_SNP [dm6]	G	A	1.612e^-4	0.846	DOWNSTREAM CG32373 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2R	7461568	2R_7461568_SNP [dm3] 2R_11574063_SNP [dm6]	G	A	1.666e^-4	0.846	INTERGENIC
2R	7461574	2R_7461574_SNP [dm3] 2R_11574069_SNP [dm6]	A	C	1.666e^-4	0.846	INTERGENIC
2R	7461591	2R_7461591_SNP [dm3] 2R_11574086_SNP [dm6]	A	T	1.666e^-4	0.846	INTERGENIC
2R	7461607	2R_7461607_SNP [dm3] 2R_11574102_SNP [dm6]	G	A	1.666e^-4	0.846	INTERGENIC
3L	6816156	3L_6816156_SNP [dm3] 3L_6823056_SNP [dm6]	C	A	1.718e^-4	0.846	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19357144	3R_19357144_SNP [dm3] 3R_23531422_SNP [dm6]	A	T	1.743e^-4	0.846	UPSTREAM CG10175 INTERGENIC
2L	10709450	2L_10709450_SNP [dm3] 2L_10709450_SNP [dm6]	C	A	1.757e^-4	0.846	UTR_5_PRIME Lip2 UPSTREAM CR44407
2L	11979175	2L_11979175_SNP [dm3] 2L_11979175_SNP [dm6]	T	A	1.757e^-4	0.846	INTERGENIC
2L	11979285	2L_11979285_SNP [dm3] 2L_11979285_SNP [dm6]	G	A	1.757e^-4	0.846	INTERGENIC
2L	11979325	2L_11979325_SNP [dm3] 2L_11979325_SNP [dm6]	C	G	1.757e^-4	0.846	INTERGENIC
2L	17193130	2L_17193130_SNP [dm3] 2L_17193130_SNP [dm6]	C	A	1.757e^-4	0.846	INTRON beat-IIIc
2L	6813706	2L_6813706_SNP [dm3] 2L_6813706_SNP [dm6]	T	C	1.757e^-4	0.846	DOWNSTREAM CR44081 INTERGENIC
2L	9567846	2L_9567846_SNP [dm3] 2L_9567846_SNP [dm6]	T	C	1.757e^-4	0.846	DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9567857	2L_9567857_SNP [dm3] 2L_9567857_SNP [dm6]	G	A	1.757e^-4	0.846	DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9567906	2L_9567906_SNP [dm3] 2L_9567906_SNP [dm6]	G	C	1.757e^-4	0.846	UPSTREAM CG3838 DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9567976	2L_9567976_DEL [dm3] 2L_9567976_DEL [dm6]	CCAAT	C	1.757e^-4	0.846	UPSTREAM CG3838 DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9568111	2L_9568111_SNP [dm3] 2L_9568111_SNP [dm6]	G	A	1.757e^-4	0.846	UPSTREAM CG3838 DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9568491	2L_9568491_SNP [dm3] 2L_9568491_SNP [dm6]	T	C	1.757e^-4	0.846	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9568622	2L_9568622_SNP [dm3] 2L_9568622_SNP [dm6]	A	G	1.757e^-4	0.846	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9568625	2L_9568625_SNP [dm3] 2L_9568625_SNP [dm6]	G	A	1.757e^-4	0.846	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9568705	2L_9568705_SNP [dm3] 2L_9568705_SNP [dm6]	G	C	1.757e^-4	0.846	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9568707	2L_9568707_SNP [dm3] 2L_9568707_SNP [dm6]	A	C	1.757e^-4	0.846	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9568761	2L_9568761_SNP [dm3] 2L_9568761_SNP [dm6]	A	T	1.757e^-4	0.846	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9568911	2L_9568911_SNP [dm3] 2L_9568911_SNP [dm6]	T	A	1.757e^-4	0.846	UTR_5_PRIME CG3838 UPSTREAM CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	9571482	2L_9571482_SNP [dm3] 2L_9571482_SNP [dm6]	C	G	1.757e^-4	0.846	START_GAINED CG3838 UTR_5_PRIME CG3838
2L	9571637	2L_9571637_SNP [dm3] 2L_9571637_SNP [dm6]	T	C	1.757e^-4	0.846	SYNONYMOUS_CODING CG3838
2L	9573220	2L_9573220_SNP [dm3] 2L_9573220_SNP [dm6]	A	C	1.757e^-4	0.846	UTR_3_PRIME CG3838 DOWNSTREAM Mtpalpha
2L	9574060	2L_9574060_SNP [dm3] 2L_9574060_SNP [dm6]	G	A	1.757e^-4	0.846	SYNONYMOUS_CODING Mtpalpha DOWNSTREAM CG3838
2L	9577335	2L_9577335_SNP [dm3] 2L_9577335_SNP [dm6]	A	G	1.757e^-4	0.846	UPSTREAM Mtpalpha DOWNSTREAM CG31709 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	9578728	2L_9578728_SNP [dm3] 2L_9578728_SNP [dm6]	T	C	1.757e^-4	0.846	UTR_3_PRIME CG31709 DOWNSTREAM gcm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	9578886	2L_9578886_SNP [dm3] 2L_9578886_SNP [dm6]	G	A	1.757e^-4	0.846	SYNONYMOUS_CODING CG31709 DOWNSTREAM gcm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9578895	2L_9578895_DEL [dm3] 2L_9578895_DEL [dm6]	ATCA	A	1.757e^-4	0.846	CODON_DELETION CG31709 DOWNSTREAM gcm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9578961	2L_9578961_DEL [dm3] 2L_9578961_DEL [dm6]	ATTCCGACTGGGATTTTGA...	A	1.757e^-4	0.846	CODON_DELETION CG31709 DOWNSTREAM gcm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9579058	2L_9579058_DEL [dm3] 2L_9579058_DEL [dm6]	TTCAT	T	1.757e^-4	0.846	DOWNSTREAM gcm INTRON CG31709	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9579097	2L_9579097_SNP [dm3] 2L_9579097_SNP [dm6]	C	T	1.757e^-4	0.846	SYNONYMOUS_CODING CG31709 DOWNSTREAM gcm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9582012	2L_9582012_SNP [dm3] 2L_9582012_SNP [dm6]	G	T	1.757e^-4	0.846	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9584132	2L_9584132_SNP [dm3] 2L_9584132_SNP [dm6]	T	G	1.757e^-4	0.846	DOWNSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2L	9584388	2L_9584388_SNP [dm3] 2L_9584388_SNP [dm6]	A	G	1.757e^-4	0.846	DOWNSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_sens
2L	9584812	2L_9584812_SNP [dm3] 2L_9584812_SNP [dm6]	T	C	1.757e^-4	0.846	EXON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9584926	2L_9584926_SNP [dm3] 2L_9584926_SNP [dm6]	A	G	1.757e^-4	0.846	EXON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	9586052	2L_9586052_SNP [dm3] 2L_9586052_SNP [dm6]	T	G	1.757e^-4	0.846	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9595082	2L_9595082_SNP [dm3] 2L_9595082_SNP [dm6]	A	C	1.757e^-4	0.846	INTERGENIC	regulatory region REDfly_CRMs
2L	9595256	2L_9595256_SNP [dm3] 2L_9595256_SNP [dm6]	G	A	1.757e^-4	0.846	INTERGENIC	regulatory region REDfly_CRMs
2R	18021857	2R_18021857_DEL [dm3] 2R_22134352_DEL [dm6]	GCTA	C	1.757e^-4	0.846	INTERGENIC
3L	13223537	3L_13223537_SNP [dm3] 3L_13230437_SNP [dm6]	C	G	1.757e^-4	0.846	INTRON caps
3L	17615537	3L_17615537_SNP [dm3] 3L_17622437_SNP [dm6]	A	C	1.757e^-4	0.846	SYNONYMOUS_CODING CG7510 UPSTREAM CG6259	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
X	18445473	X_18445473_DEL [dm3] X_18551440_DEL [dm6]	GGAGTACTGTA...	G	1.757e^-4	0.846	INTRON Bx
X	7326025	X_7326025_SNP [dm3] X_7431992_SNP [dm6]	T	C	1.757e^-4	0.846	INTERGENIC
X	8465184	X_8465184_SNP [dm3] X_8571151_SNP [dm6]	T	A	1.757e^-4	0.846	UTR_3_PRIME spirit UPSTREAM CG12111 DOWNSTREAM Trf4-1	TF binding site BDTNP1_TFBS_da
3L	12439789	3L_12439789_DEL [dm3] 3L_12446689_DEL [dm6]	CACTGCTCTCC...	C	1.765e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	12089943	3L_12089943_SNP [dm3] 3L_12096843_SNP [dm6]	T	A	1.769e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2565295	X_2565295_SNP [dm3] X_2671262_SNP [dm6]	T	G	1.769e^-4	0.846	INTRON sgg
X	2565324	X_2565324_SNP [dm3] X_2671291_SNP [dm6]	G	C	1.769e^-4	0.846	INTRON sgg
3L	5793704	3L_5793704_SNP [dm3] 3L_5800604_SNP [dm6]	C	T	1.809e^-4	0.846	SYNONYMOUS_CODING S6k	TF binding site mE1_TFBS_cad
2R	13737501	2R_13737501_SNP [dm3] 2R_17849996_SNP [dm6]	A	G	1.814e^-4	0.846	UPSTREAM olf186-F INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
3L	18551816	3L_18551816_SNP [dm3] 3L_18558716_SNP [dm6]	G	T	1.829e^-4	0.846	INTERGENIC
2R	7509464	2R_7509464_SNP [dm3] 2R_11621959_SNP [dm6]	T	G	1.832e^-4	0.846	SYNONYMOUS_CODING CG9005	TF binding site mE1_TFBS_cad
3L	17880410	3L_17880410_SNP [dm3] 3L_17887310_SNP [dm6]	C	T	1.899e^-4	0.846	UPSTREAM CG16775 & 1 other INTERGENIC
2R	18034500	2R_18034500_SNP [dm3] 2R_22146995_SNP [dm6]	C	A	1.955e^-4	0.846	INTRON a	TF binding site mE1_TFBS_inv
2R	18034509	2R_18034509_SNP [dm3] 2R_22147004_SNP [dm6]	T	C	1.955e^-4	0.846	INTRON a	TF binding site mE1_TFBS_inv
X	12459128	X_12459128_SNP [dm3] X_12565095_SNP [dm6]	G	A	1.965e^-4	0.846	SYNONYMOUS_CODING CG43921
2R	10985713	2R_10985713_SNP [dm3] 2R_15098208_SNP [dm6]	C	G	1.968e^-4	0.846	INTERGENIC
2R	17730906	2R_17730906_DEL [dm3] 2R_21843401_DEL [dm6]	CTTTTGTATGG...	C	1.968e^-4	0.846	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17730918	2R_17730918_DEL [dm3] 2R_21843413_DEL [dm6]	CGA	C	1.968e^-4	0.846	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18003922	2R_18003922_SNP [dm3] 2R_22116417_SNP [dm6]	C	A	1.968e^-4	0.846	UPSTREAM Vrp1 DOWNSTREAM CG30281 INTRON Vrp1
3L	756443	3L_756443_SNP [dm3] 3L_756443_SNP [dm6]	A	G	1.968e^-4	0.846	UPSTREAM hng3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6960189	3R_6960189_SNP [dm3] 3R_11134467_SNP [dm6]	A	G	2.004e^-4	0.846	INTERGENIC
3L	16712260	3L_16712260_SNP [dm3] 3L_16719160_SNP [dm6]	G	T	2.037e^-4	0.846	SYNONYMOUS_CODING Dab
2R	8402292	2R_8402292_SNP [dm3] 2R_12514787_SNP [dm6]	G	A	2.039e^-4	0.846	START_GAINED achi UTR_5_PRIME achi UPSTREAM CG13151 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx
2R	8406476	2R_8406476_SNP [dm3] 2R_12518971_SNP [dm6]	G	A	2.039e^-4	0.846	UPSTREAM CG8569 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA
3L	5526480	3L_5526480_SNP [dm3] 3L_5533380_SNP [dm6]	A	G	2.039e^-4	0.846	DOWNSTREAM CG13285 INTERGENIC
X	17051195	X_17051195_SNP [dm3] X_17157162_SNP [dm6]	A	G	2.045e^-4	0.846	SYNONYMOUS_CODING xmas-2	TF binding site mE1_TFBS_chinmo
2R	17730866	2R_17730866_SNP [dm3] 2R_21843361_SNP [dm6]	A	G	2.066e^-4	0.846	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12015604	3L_12015604_SNP [dm3] 3L_12022504_SNP [dm6]	G	A	2.098e^-4	0.846	INTRON rols
3R	17088334	3R_17088334_SNP [dm3] 3R_21262612_SNP [dm6]	G	A	2.098e^-4	0.846	SYNONYMOUS_CODING ETHR INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17088335	3R_17088335_SNP [dm3] 3R_21262613_SNP [dm6]	C	A	2.098e^-4	0.846	SYNONYMOUS_CODING ETHR INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17088416	3R_17088416_SNP [dm3] 3R_21262694_SNP [dm6]	T	G	2.098e^-4	0.846	NON_SYNONYMOUS_CODING ETHR INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18037097	3R_18037097_SNP [dm3] 3R_22211375_SNP [dm6]	T	C	2.098e^-4	0.846	UPSTREAM Gld2 INTRON SKIP
3R	22265662	3R_22265662_SNP [dm3] 3R_26439940_SNP [dm6]	T	G	2.098e^-4	0.846	UPSTREAM tx INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	2308230	3R_2308230_SNP [dm3] 3R_6482508_SNP [dm6]	G	T	2.098e^-4	0.846	UPSTREAM CG15186 INTRON CG15186
3R	25375358	3R_25375358_SNP [dm3] 3R_29549636_SNP [dm6]	G	C	2.098e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	6962780	3R_6962780_SNP [dm3] 3R_11137058_SNP [dm6]	G	A	2.098e^-4	0.846	UPSTREAM CG4706 INTERGENIC
3R	9498717	3R_9498717_DEL [dm3] 3R_13672995_DEL [dm6]	AATAATGTTATATCTAAGGA...	A	2.098e^-4	0.846	INTRON Task6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
2L	1019043	2L_1019043_SNP [dm3] 2L_1019043_SNP [dm6]	T	C	2.127e^-4	0.846	INTRON IA-2
2R	11895286	2R_11895286_SNP [dm3] 2R_16007781_SNP [dm6]	C	G	2.146e^-4	0.846	UPSTREAM CG8389 & 1 other DOWNSTREAM CG8370 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	12090775	X_12090775_SNP [dm3] X_12196742_SNP [dm6]	G	A	2.146e^-4	0.846	INTRON Ten-a
2L	17105115	2L_17105115_SNP [dm3] 2L_17105115_SNP [dm6]	T	A	2.160e^-4	0.846	UPSTREAM CR45448 INTERGENIC
3L	10484435	3L_10484435_SNP [dm3] 3L_10491335_SNP [dm6]	G	A	2.176e^-4	0.846	SYNONYMOUS_CODING S-Lap4 INTRON A2bp1	TF binding site mE1_TFBS_cad
3L	10322968	3L_10322968_SNP [dm3] 3L_10329868_SNP [dm6]	C	A	2.211e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Kr
3L	10323037	3L_10323037_SNP [dm3] 3L_10329937_SNP [dm6]	T	C	2.211e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Kr
3L	14953420	3L_14953420_SNP [dm3] 3L_14960320_SNP [dm6]	A	G	2.211e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	14953532	3L_14953532_SNP [dm3] 3L_14960432_SNP [dm6]	G	A	2.211e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	22883209	3R_22883209_SNP [dm3] 3R_27057487_SNP [dm6]	C	A	2.226e^-4	0.846	DOWNSTREAM Nep5 & 1 other INTRON RYa-R
3R	15615600	3R_15615600_SNP [dm3] 3R_19789878_SNP [dm6]	T	A	2.247e^-4	0.846	UPSTREAM tRNA:V3b:92Bb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11583217	2R_11583217_SNP [dm3] 2R_15695712_SNP [dm6]	C	T	2.259e^-4	0.846	SPLICE_SITE_REGION CG33461 DOWNSTREAM CG33460 INTRON CG33461
3L	8880203	3L_8880203_SNP [dm3] 3L_8887103_SNP [dm6]	T	C	2.262e^-4	0.846	SYNONYMOUS_CODING dally
2L	10580956	2L_10580956_SNP [dm3] 2L_10580956_SNP [dm6]	T	C	2.276e^-4	0.846	DOWNSTREAM CG34161 & 1 other INTRON Trim9
2R	10953554	2R_10953554_SNP [dm3] 2R_15066049_SNP [dm6]	C	G	2.281e^-4	0.846	INTERGENIC
2R	10953609	2R_10953609_SNP [dm3] 2R_15066104_SNP [dm6]	A	T	2.281e^-4	0.846	INTERGENIC
X	2597535	X_2597535_SNP [dm3] X_2703502_SNP [dm6]	C	T	2.281e^-4	0.846	UTR_5_PRIME Csat INTRON Csat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
X	8927778	X_8927778_SNP [dm3] X_9033745_SNP [dm6]	C	A	2.290e^-4	0.846	INTRON CR43836 & 1 other
3R	25965322	3R_25965322_SNP [dm3] 3R_30139600_SNP [dm6]	T	C	2.294e^-4	0.846	INTRON AdoR
3L	7719668	3L_7719668_SNP [dm3] 3L_7726568_SNP [dm6]	C	A	2.311e^-4	0.846	UPSTREAM CG7457 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1726405	2R_1726405_SNP [dm3] 2R_5838900_SNP [dm6]	A	G	2.347e^-4	0.846	INTRON dpr12
3R	17676733	3R_17676733_INS [dm3] 3R_21851011_INS [dm6]	G	GCG	2.359e^-4	0.846	UTR_3_PRIME glec	TF binding site mE1_TFBS_cnc
3L	900025	3L_900025_SNP [dm3] 3L_900025_SNP [dm6]	G	C	2.370e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	3104845	3R_3104845_DEL [dm3] 3R_7279123_DEL [dm6]	TT	T	2.370e^-4	0.846	INTRON rn
X	17051351	X_17051351_SNP [dm3] X_17157318_SNP [dm6]	C	T	2.390e^-4	0.846	SYNONYMOUS_CODING xmas-2	TF binding site mE1_TFBS_chinmo
3L	20352905	3L_20352905_SNP [dm3] 3L_20359805_SNP [dm6]	C	T	2.396e^-4	0.846	SYNONYMOUS_CODING CG5665 DOWNSTREAM DNApol-alpha60
2L	15837612	2L_15837612_SNP [dm3] 2L_15837612_SNP [dm6]	C	T	2.410e^-4	0.846	UPSTREAM CR31822 INTERGENIC
2L	6291812	2L_6291812_SNP [dm3] 2L_6291812_SNP [dm6]	A	G	2.410e^-4	0.846	DOWNSTREAM Ddr INTRON Ddr	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10026053	3L_10026053_SNP [dm3] 3L_10032953_SNP [dm6]	A	C	2.422e^-4	0.846	INTRON dpr6
3L	10873574	3L_10873574_SNP [dm3] 3L_10880474_SNP [dm6]	T	C	2.431e^-4	0.846	DOWNSTREAM CG6409 & 1 other INTERGENIC
2L	8670249	2L_8670249_SNP [dm3] 2L_8670249_SNP [dm6]	C	A	2.432e^-4	0.846	UTR_3_PRIME Sema-1a DOWNSTREAM Sema-1a
2L	12611619	2L_12611619_SNP [dm3] 2L_12611619_SNP [dm6]	A	C	2.438e^-4	0.846	UPSTREAM Ref2 INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	11473834	2R_11473834_SNP [dm3] 2R_15586329_SNP [dm6]	T	C	2.438e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11473841	2R_11473841_SNP [dm3] 2R_15586336_SNP [dm6]	T	A	2.438e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16677280	2R_16677280_SNP [dm3] 2R_20789775_SNP [dm6]	A	C	2.438e^-4	0.846	NON_SYNONYMOUS_CODING CG43667 UPSTREAM CG43666 DOWNSTREAM CG43677
2R	18034842	2R_18034842_SNP [dm3] 2R_22147337_SNP [dm6]	G	T	2.443e^-4	0.846	INTRON a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6950609	2R_6950609_SNP [dm3] 2R_11063104_SNP [dm6]	C	T	2.443e^-4	0.846	INTRON luna
3L	8048092	3L_8048092_SNP [dm3] 3L_8054992_SNP [dm6]	T	C	2.443e^-4	0.846	NON_SYNONYMOUS_CODING bip1 DOWNSTREAM nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12628277	2R_12628277_SNP [dm3] 2R_16740772_SNP [dm6]	C	G	2.452e^-4	0.846	INTERGENIC
2R	17092896	2R_17092896_SNP [dm3] 2R_21205391_SNP [dm6]	T	C	2.452e^-4	0.846	SYNONYMOUS_CODING Glycogenin INTRON CG44245
X	17051918	X_17051918_SNP [dm3] X_17157885_SNP [dm6]	A	G	2.480e^-4	0.846	SYNONYMOUS_CODING xmas-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19837755	2L_19837755_SNP [dm3] 2L_19837755_SNP [dm6]	C	T	2.490e^-4	0.846	INTRON sick
2R	9774573	2R_9774573_SNP [dm3] 2R_13887068_SNP [dm6]	G	A	2.610e^-4	0.846	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
X	5452362	X_5452362_SNP [dm3] X_5558329_SNP [dm6]	C	T	2.610e^-4	0.846	INTRON Vsx2
X	5452389	X_5452389_SNP [dm3] X_5558356_SNP [dm6]	G	A	2.610e^-4	0.846	INTRON Vsx2
X	5452390	X_5452390_SNP [dm3] X_5558357_SNP [dm6]	A	G	2.610e^-4	0.846	INTRON Vsx2
X	5452406	X_5452406_SNP [dm3] X_5558373_SNP [dm6]	A	C	2.610e^-4	0.846	INTRON Vsx2
3R	11306074	3R_11306074_SNP [dm3] 3R_15480352_SNP [dm6]	T	G	2.633e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20460830	3R_20460830_SNP [dm3] 3R_24635108_SNP [dm6]	C	T	2.637e^-4	0.846	UTR_5_PRIME CG43222 UPSTREAM CG43222 DOWNSTREAM puf & 1 other
3R	21285293	3R_21285293_SNP [dm3] 3R_25459571_SNP [dm6]	T	C	2.637e^-4	0.846	INTRON Fur1
3R	7634623	3R_7634623_SNP [dm3] 3R_11808901_SNP [dm6]	C	T	2.637e^-4	0.846	INTRON ClC-a	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	7654086	3R_7654086_SNP [dm3] 3R_11828364_SNP [dm6]	A	T	2.637e^-4	0.846	INTRON CG6959
3L	19977280	3L_19977280_SNP [dm3] 3L_19984180_SNP [dm6]	G	T	2.649e^-4	0.846	NON_SYNONYMOUS_CODING CG17732 DOWNSTREAM hale
3R	10942340	3R_10942340_SNP [dm3] 3R_15116618_SNP [dm6]	G	A	2.649e^-4	0.846	INTRON CG42788	TF binding site mE1_TFBS_sens
3R	10942345	3R_10942345_SNP [dm3] 3R_15116623_SNP [dm6]	T	G	2.649e^-4	0.846	INTRON CG42788	TF binding site mE1_TFBS_sens
3R	13918690	3R_13918690_SNP [dm3] 3R_18092968_SNP [dm6]	A	T	2.649e^-4	0.846	INTRON sr	TF binding site BDTNP1_TFBS_twi
3R	21336974	3R_21336974_SNP [dm3] 3R_25511252_SNP [dm6]	G	T	2.649e^-4	0.846	INTERGENIC
3R	7633689	3R_7633689_SNP [dm3] 3R_11807967_SNP [dm6]	T	C	2.649e^-4	0.846	INTRON ClC-a
3R	7633741	3R_7633741_SNP [dm3] 3R_11808019_SNP [dm6]	G	A	2.649e^-4	0.846	INTRON ClC-a
3R	7633766	3R_7633766_SNP [dm3] 3R_11808044_SNP [dm6]	C	T	2.649e^-4	0.846	INTRON ClC-a
3R	7633788	3R_7633788_SNP [dm3] 3R_11808066_SNP [dm6]	C	A	2.649e^-4	0.846	INTRON ClC-a
3L	3030315	3L_3030315_SNP [dm3] 3L_3030315_SNP [dm6]	G	A	2.677e^-4	0.846	INTERGENIC
2L	3293836	2L_3293836_SNP [dm3] 2L_3293836_SNP [dm6]	A	G	2.689e^-4	0.846	UTR_5_PRIME CG9664
X	21440011	X_21440011_SNP [dm3] X_21568984_SNP [dm6]	C	G	2.714e^-4	0.846	INTERGENIC
2R	12048424	2R_12048424_SNP [dm3] 2R_16160919_SNP [dm6]	A	C	2.730e^-4	0.846	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5471628	X_5471628_SNP [dm3] X_5577595_SNP [dm6]	G	T	2.732e^-4	0.846	INTERGENIC
X	5471630	X_5471630_SNP [dm3] X_5577597_SNP [dm6]	C	T	2.732e^-4	0.846	INTERGENIC
3L	18552744	3L_18552744_SNP [dm3] 3L_18559644_SNP [dm6]	A	T	2.760e^-4	0.846	UPSTREAM AstC-R1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10207249	2R_10207249_SNP [dm3] 2R_14319744_SNP [dm6]	G	A	2.787e^-4	0.846	INTRON Shroom
2R	17588095	2R_17588095_SNP [dm3] 2R_21700590_SNP [dm6]	A	C	2.787e^-4	0.846	UPSTREAM HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7810605	2R_7810605_SNP [dm3] 2R_11923100_SNP [dm6]	A	T	2.787e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8435080	2R_8435080_DEL [dm3] 2R_12547575_DEL [dm6]	AA	A	2.787e^-4	0.846	INTRON fra	TF binding site BDTNP1_TFBS_dl
2R	9354109	2R_9354109_SNP [dm3] 2R_13466604_SNP [dm6]	G	T	2.787e^-4	0.846	INTRON arr
3L	10840117	3L_10840117_SNP [dm3] 3L_10847017_SNP [dm6]	G	A	2.787e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	11690671	3L_11690671_SNP [dm3] 3L_11697571_SNP [dm6]	T	G	2.787e^-4	0.846	SPLICE_SITE_REGION CG6053 UPSTREAM CG11652 INTRON CG6053	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11694931	3L_11694931_INS [dm3] 3L_11701831_INS [dm6]	A	AA	2.787e^-4	0.846	INTRON CG11658	TF binding site mE1_TFBS_cad
3L	11695019	3L_11695019_SNP [dm3] 3L_11701919_SNP [dm6]	A	G	2.787e^-4	0.846	INTRON CG11658
3L	13254597	3L_13254597_SNP [dm3] 3L_13261497_SNP [dm6]	G	A	2.787e^-4	0.846	INTRON caps
3L	18741594	3L_18741594_SNP [dm3] 3L_18748494_SNP [dm6]	G	A	2.787e^-4	0.846	UPSTREAM Atg3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9209000	3L_9209000_SNP [dm3] 3L_9215900_SNP [dm6]	G	A	2.787e^-4	0.846	DOWNSTREAM CG4476 INTERGENIC
3L	9209023	3L_9209023_SNP [dm3] 3L_9215923_SNP [dm6]	C	A	2.787e^-4	0.846	DOWNSTREAM CG4476 INTERGENIC
X	16485703	X_16485703_SNP [dm3] X_16591670_SNP [dm6]	G	A	2.787e^-4	0.846	SYNONYMOUS_CODING Cap	TF binding site mE1_TFBS_sens
X	16676412	X_16676412_SNP [dm3] X_16782379_SNP [dm6]	G	C	2.787e^-4	0.846	INTRON if	TF binding site BDTNP1_TFBS_twi
X	16676483	X_16676483_SNP [dm3] X_16782450_SNP [dm6]	A	G	2.787e^-4	0.846	INTRON if	TF binding site BDTNP1_TFBS_twi
X	17567959	X_17567959_SNP [dm3] X_17673926_SNP [dm6]	A	G	2.787e^-4	0.846	SYNONYMOUS_CODING chas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5452415	X_5452415_SNP [dm3] X_5558382_SNP [dm6]	C	T	2.787e^-4	0.846	INTRON Vsx2
2L	9584925	2L_9584925_SNP [dm3] 2L_9584925_SNP [dm6]	T	C	2.788e^-4	0.846	EXON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	10229243	2R_10229243_SNP [dm3] 2R_14341738_SNP [dm6]	G	A	2.788e^-4	0.846	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_dl
3L	11531727	3L_11531727_SNP [dm3] 3L_11538627_SNP [dm6]	T	A	2.788e^-4	0.846	INTRON Mob2
3L	12383113	3L_12383113_SNP [dm3] 3L_12390013_SNP [dm6]	A	T	2.788e^-4	0.846	INTRON Ncc69
3L	12383116	3L_12383116_SNP [dm3] 3L_12390016_SNP [dm6]	A	T	2.788e^-4	0.846	INTRON Ncc69
3L	12742058	3L_12742058_SNP [dm3] 3L_12748958_SNP [dm6]	C	G	2.788e^-4	0.846	UPSTREAM Klc INTRON Klc
3L	13856060	3L_13856060_SNP [dm3] 3L_13862960_SNP [dm6]	T	A	2.788e^-4	0.846	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
3L	13856075	3L_13856075_SNP [dm3] 3L_13862975_SNP [dm6]	A	G	2.788e^-4	0.846	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
3L	13856077	3L_13856077_SNP [dm3] 3L_13862977_SNP [dm6]	T	C	2.788e^-4	0.846	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
3L	13856224	3L_13856224_SNP [dm3] 3L_13863124_SNP [dm6]	T	G	2.788e^-4	0.846	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	13856225	3L_13856225_INS [dm3] 3L_13863125_INS [dm6]	T	TA	2.788e^-4	0.846	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	14147587	3L_14147587_SNP [dm3] 3L_14154487_SNP [dm6]	T	C	2.788e^-4	0.846	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1445529	3L_1445529_SNP [dm3] 3L_1445529_SNP [dm6]	T	C	2.788e^-4	0.846	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17615435	3L_17615435_SNP [dm3] 3L_17622335_SNP [dm6]	G	A	2.788e^-4	0.846	SYNONYMOUS_CODING CG7510 UPSTREAM CG6259	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	2407994	3L_2407994_SNP [dm3] 3L_2407994_SNP [dm6]	C	A	2.788e^-4	0.846	NON_SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2439975	3L_2439975_SNP [dm3] 3L_2439975_SNP [dm6]	C	G	2.788e^-4	0.846	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	2440024	3L_2440024_SNP [dm3] 3L_2440024_SNP [dm6]	C	T	2.788e^-4	0.846	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2440088	3L_2440088_SNP [dm3] 3L_2440088_SNP [dm6]	A	T	2.788e^-4	0.846	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7857793	3L_7857793_SNP [dm3] 3L_7864693_SNP [dm6]	T	G	2.788e^-4	0.846	INTRON Pdp1
3L	8675319	3L_8675319_SNP [dm3] 3L_8682219_SNP [dm6]	T	A	2.788e^-4	0.846	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd
3L	8675674	3L_8675674_SNP [dm3] 3L_8682574_SNP [dm6]	T	C	2.788e^-4	0.846	INTERGENIC	regulatory region REDfly_CRMs
3R	21383804	3R_21383804_SNP [dm3] 3R_25558082_SNP [dm6]	G	T	2.788e^-4	0.846	INTRON msi
3R	25018751	3R_25018751_SNP [dm3] 3R_29193029_SNP [dm6]	T	C	2.788e^-4	0.846	INTRON CG14509
3R	25018784	3R_25018784_SNP [dm3] 3R_29193062_SNP [dm6]	T	A	2.788e^-4	0.846	INTRON CG14509
2L	18510726	2L_18510726_SNP [dm3] 2L_18510726_SNP [dm6]	G	A	2.806e^-4	0.846	INTRON CG10178
3L	18367162	3L_18367162_SNP [dm3] 3L_18374062_SNP [dm6]	T	G	2.810e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	11198598	3R_11198598_SNP [dm3] 3R_15372876_SNP [dm6]	A	G	2.813e^-4	0.846	SYNONYMOUS_CODING Ccm3 UPSTREAM CG6136	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	14413457	3R_14413457_SNP [dm3] 3R_18587735_SNP [dm6]	C	G	2.813e^-4	0.846	SYNONYMOUS_CODING fray INTRON CG7694	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23495882	3R_23495882_SNP [dm3] 3R_27670160_SNP [dm6]	A	G	2.813e^-4	0.846	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo
3R	7865679	3R_7865679_SNP [dm3] 3R_12039957_SNP [dm6]	G	A	2.813e^-4	0.846	UPSTREAM CG14736 INTERGENIC
2R	13896712	2R_13896712_SNP [dm3] 2R_18009207_SNP [dm6]	T	A	2.834e^-4	0.846	INTERGENIC
2R	13896714	2R_13896714_SNP [dm3] 2R_18009209_SNP [dm6]	T	A	2.834e^-4	0.846	INTERGENIC
2L	10709212	2L_10709212_SNP [dm3] 2L_10709212_SNP [dm6]	T	C	2.841e^-4	0.846	UTR_5_PRIME Lip2 UPSTREAM CR44407
2L	17076480	2L_17076480_SNP [dm3] 2L_17076480_SNP [dm6]	A	G	2.841e^-4	0.846	INTERGENIC
2L	3325511	2L_3325511_SNP [dm3] 2L_3325511_SNP [dm6]	C	T	2.841e^-4	0.846	INTRON CG33281
2L	3325566	2L_3325566_SNP [dm3] 2L_3325566_SNP [dm6]	T	C	2.841e^-4	0.846	INTRON CG33281
2L	3325637	2L_3325637_SNP [dm3] 2L_3325637_SNP [dm6]	C	T	2.841e^-4	0.846	INTRON CG33281
2L	3325646	2L_3325646_SNP [dm3] 2L_3325646_SNP [dm6]	C	T	2.841e^-4	0.846	INTRON CG33281
2L	790639	2L_790639_SNP [dm3] 2L_790639_SNP [dm6]	C	T	2.841e^-4	0.846	UTR_5_PRIME Pkg21D	TF binding site mE1_TFBS_cad
2L	19815878	2L_19815878_SNP [dm3] 2L_19815878_SNP [dm6]	G	T	2.861e^-4	0.846	UPSTREAM snRNA:U5:38ABb & 1 other INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16160457	X_16160457_SNP [dm3] X_16266424_SNP [dm6]	G	A	2.914e^-4	0.846	NON_SYNONYMOUS_CODING CG12507 DOWNSTREAM kat80
X	16160485	X_16160485_SNP [dm3] X_16266452_SNP [dm6]	T	C	2.914e^-4	0.846	NON_SYNONYMOUS_CODING CG12507 DOWNSTREAM kat80
3L	9628886	3L_9628886_SNP [dm3] 3L_9635786_SNP [dm6]	G	A	2.977e^-4	0.846	SYNONYMOUS_CODING fry
2R	10724984	2R_10724984_SNP [dm3] 2R_14837479_SNP [dm6]	A	G	2.991e^-4	0.846	INTERGENIC
2R	20967906	2R_20967906_SNP [dm3] 2R_25080383_SNP [dm6]	C	A	2.992e^-4	0.846	INTRON gol	regulatory region REDfly_CRMs
3R	22877077	3R_22877077_SNP [dm3] 3R_27051355_SNP [dm6]	A	G	2.992e^-4	0.846	DOWNSTREAM TwdlT INTRON RYa-R
2R	1677769	2R_1677769_SNP [dm3] 2R_5790264_SNP [dm6]	T	G	3.020e^-4	0.846	INTERGENIC
3R	21264472	3R_21264472_SNP [dm3] 3R_25438750_SNP [dm6]	A	C	3.114e^-4	0.846	INTRON Fur1
2L	9568142	2L_9568142_SNP [dm3] 2L_9568142_SNP [dm6]	A	T	3.118e^-4	0.846	UPSTREAM CG3838 DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	20347397	3L_20347397_SNP [dm3] 3L_20354297_SNP [dm6]	C	A	3.118e^-4	0.846	SYNONYMOUS_CODING CG5618 UTR_5_PRIME CG5618 DOWNSTREAM eRF1
3L	20347529	3L_20347529_SNP [dm3] 3L_20354429_SNP [dm6]	A	G	3.118e^-4	0.846	DOWNSTREAM eRF1 INTRON CG5618
3L	20348286	3L_20348286_SNP [dm3] 3L_20355186_SNP [dm6]	G	C	3.118e^-4	0.846	INTRON CG5618	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3L	20354840	3L_20354840_INS [dm3] 3L_20361740_INS [dm6]	A	ACAGTATAATTCGCTTAGCT...	3.118e^-4	0.846	UPSTREAM DNApol-alpha60 DOWNSTREAM Toll-9 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	22029272	3L_22029272_SNP [dm3] 3L_22036172_SNP [dm6]	A	G	3.118e^-4	0.846	INTRON Oct-TyrR
3R	17974050	3R_17974050_SNP [dm3] 3R_22148328_SNP [dm6]	A	T	3.118e^-4	0.846	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	5684569	X_5684569_SNP [dm3] X_5790536_SNP [dm6]	G	T	3.118e^-4	0.846	SYNONYMOUS_CODING CG15767 UPSTREAM mir-4963 DOWNSTREAM CG42699 & 1 other	TF binding site mE1_TFBS_cad
X	7326027	X_7326027_SNP [dm3] X_7431994_SNP [dm6]	C	T	3.118e^-4	0.846	INTERGENIC
3L	10277508	3L_10277508_SNP [dm3] 3L_10284408_SNP [dm6]	A	T	3.123e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	278207	2L_278207_SNP [dm3] 2L_278207_SNP [dm6]	C	G	3.155e^-4	0.846	NON_SYNONYMOUS_CODING smo UTR_5_PRIME CG17078 UPSTREAM CG17078	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9568149	2L_9568149_SNP [dm3] 2L_9568149_SNP [dm6]	C	G	3.155e^-4	0.846	UPSTREAM CG3838 DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9568176	2L_9568176_SNP [dm3] 2L_9568176_SNP [dm6]	C	T	3.155e^-4	0.846	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9569776	2L_9569776_SNP [dm3] 2L_9569776_SNP [dm6]	C	A	3.155e^-4	0.846	UPSTREAM CR44149 & 1 other INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9585884	2L_9585884_SNP [dm3] 2L_9585884_SNP [dm6]	G	T	3.155e^-4	0.846	INTRON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9594994	2L_9594994_INS [dm3] 2L_9594994_INS [dm6]	A	AAA	3.155e^-4	0.846	INTERGENIC	regulatory region REDfly_CRMs
2L	9915899	2L_9915899_SNP [dm3] 2L_9915899_SNP [dm6]	G	T	3.155e^-4	0.846	DOWNSTREAM Srp54 INTRON yip2
2L	9916723	2L_9916723_SNP [dm3] 2L_9916723_SNP [dm6]	T	C	3.155e^-4	0.846	SYNONYMOUS_CODING yip2 DOWNSTREAM CG5885	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9917210	2L_9917210_SNP [dm3] 2L_9917210_SNP [dm6]	G	A	3.155e^-4	0.846	UTR_3_PRIME yip2 DOWNSTREAM CG5885	TF binding site mE1_TFBS_chinmo
2L	9918024	2L_9918024_SNP [dm3] 2L_9918024_SNP [dm6]	G	A	3.155e^-4	0.846	SYNONYMOUS_CODING CG5885 UPSTREAM CG4598 DOWNSTREAM yip2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	2407933	3L_2407933_SNP [dm3] 3L_2407933_SNP [dm6]	A	G	3.155e^-4	0.846	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20601250	3R_20601250_SNP [dm3] 3R_24775528_SNP [dm6]	G	A	3.166e^-4	0.846	INTRON CG42331	TF binding site mE1_TFBS_cad
X	16852193	X_16852193_SNP [dm3] X_16958160_SNP [dm6]	C	A	3.178e^-4	0.846	SYNONYMOUS_CODING CG9086	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8757454	3R_8757454_SNP [dm3] 3R_12931732_SNP [dm6]	T	C	3.198e^-4	0.846	SYNONYMOUS_CODING beat-Vb UPSTREAM CR44236
2L	2713208	2L_2713208_SNP [dm3] 2L_2713208_SNP [dm6]	A	G	3.206e^-4	0.846	INTRON CG31690
3R	3155687	3R_3155687_SNP [dm3] 3R_7329965_SNP [dm6]	T	C	3.215e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13254536	3L_13254536_SNP [dm3] 3L_13261436_SNP [dm6]	G	T	3.247e^-4	0.846	INTRON caps
3L	13254546	3L_13254546_SNP [dm3] 3L_13261446_SNP [dm6]	G	T	3.247e^-4	0.846	INTRON caps
X	16485589	X_16485589_SNP [dm3] X_16591556_SNP [dm6]	C	T	3.247e^-4	0.846	SYNONYMOUS_CODING Cap	TF binding site mE1_TFBS_sens
3L	8729184	3L_8729184_SNP [dm3] 3L_8736084_SNP [dm6]	T	G	3.266e^-4	0.846	DOWNSTREAM Prm INTRON Prm	TF binding site mE1_TFBS_inv
3L	23438518	3L_23438518_SNP [dm3] 3L_23445418_SNP [dm6]	A	C	3.284e^-4	0.846	INTERGENIC
2R	13186187	2R_13186187_SNP [dm3] 2R_17298682_SNP [dm6]	A	G	3.294e^-4	0.846	INTRON mbl
X	21328570	X_21328570_SNP [dm3] X_21457543_SNP [dm6]	C	T	3.294e^-4	0.846	UTR_5_PRIME CG42343 INTRON CG42343	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	12305015	2L_12305015_SNP [dm3] 2L_12305015_SNP [dm6]	T	C	3.306e^-4	0.846	INTRON aret
2R	17730715	2R_17730715_SNP [dm3] 2R_21843210_SNP [dm6]	C	G	3.318e^-4	0.846	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17269042	2R_17269042_SNP [dm3] 2R_21381537_SNP [dm6]	G	C	3.329e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_inv
2R	17269996	2R_17269996_SNP [dm3] 2R_21382491_SNP [dm6]	C	G	3.329e^-4	0.846	DOWNSTREAM CG10795 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	17270018	2R_17270018_SNP [dm3] 2R_21382513_SNP [dm6]	T	C	3.329e^-4	0.846	DOWNSTREAM CG10795 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	20285463	3L_20285463_SNP [dm3] 3L_20292363_SNP [dm6]	G	C	3.341e^-4	0.846	INTRON gogo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	228336	2L_228336_SNP [dm3] 2L_228336_SNP [dm6]	T	C	3.346e^-4	0.846	INTRON kis EXON CR44221
2L	17104676	2L_17104676_SNP [dm3] 2L_17104676_SNP [dm6]	C	A	3.350e^-4	0.846	UPSTREAM CR45448 INTERGENIC
2L	9579334	2L_9579334_SNP [dm3] 2L_9579334_SNP [dm6]	G	A	3.367e^-4	0.846	SYNONYMOUS_CODING CG31709 DOWNSTREAM gcm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9584229	2L_9584229_SNP [dm3] 2L_9584229_SNP [dm6]	T	G	3.367e^-4	0.846	DOWNSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17614732	3L_17614732_SNP [dm3] 3L_17621632_SNP [dm6]	G	A	3.367e^-4	0.846	UPSTREAM CG7510 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	11751112	3L_11751112_SNP [dm3] 3L_11758012_SNP [dm6]	A	T	3.381e^-4	0.846	INTRON CG6024
2R	19676629	2R_19676629_SNP [dm3] 2R_23789106_SNP [dm6]	C	G	3.385e^-4	0.846	INTRON CG9850	TF binding site mE1_TFBS_HSA
2L	11979199	2L_11979199_INS [dm3] 2L_11979199_INS [dm6]	G	GC	3.392e^-4	0.846	INTERGENIC
2L	11979202	2L_11979202_SNP [dm3] 2L_11979202_SNP [dm6]	A	T	3.392e^-4	0.846	INTERGENIC
2L	11979204	2L_11979204_DEL [dm3] 2L_11979204_DEL [dm6]	AG	A	3.392e^-4	0.846	INTERGENIC
2L	16945098	2L_16945098_SNP [dm3] 2L_16945098_SNP [dm6]	T	C	3.396e^-4	0.846	EXON CR43053
2R	12599633	2R_12599633_SNP [dm3] 2R_16712128_SNP [dm6]	G	A	3.421e^-4	0.846	INTRON CG30463
3L	20915133	3L_20915133_SNP [dm3] 3L_20922033_SNP [dm6]	G	A	3.454e^-4	0.846	UPSTREAM CR43929 DOWNSTREAM CR45734 INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13367597	2R_13367597_SNP [dm3] 2R_17480092_SNP [dm6]	A	G	3.481e^-4	0.846	UTR_3_PRIME CG43110 INTRON veil	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5689562	3L_5689562_SNP [dm3] 3L_5696462_SNP [dm6]	C	T	3.487e^-4	0.846	UTR_5_PRIME sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3773400	2R_3773400_SNP [dm3] 2R_7885895_SNP [dm6]	G	T	3.496e^-4	0.846	UTR_5_PRIME Dgk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	15849454	X_15849454_SNP [dm3] X_15955421_SNP [dm6]	G	A	3.516e^-4	0.846	INTRON mmd	TF binding site mE1_TFBS_HSA
3L	7719867	3L_7719867_SNP [dm3] 3L_7726767_SNP [dm6]	A	G	3.557e^-4	0.846	UPSTREAM CG7457 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13124347	2L_13124347_SNP [dm3] 2L_13124347_SNP [dm6]	A	G	3.590e^-4	0.846	INTERGENIC
X	19256976	X_19256976_SNP [dm3] X_19362943_SNP [dm6]	A	C	3.593e^-4	0.846	INTRON kek5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17118033	2L_17118033_SNP [dm3] 2L_17118033_SNP [dm6]	T	C	3.663e^-4	0.846	INTERGENIC
2L	17333249	2L_17333249_SNP [dm3] 2L_17333249_SNP [dm6]	G	A	3.663e^-4	0.846	INTERGENIC
2L	17333258	2L_17333258_SNP [dm3] 2L_17333258_SNP [dm6]	G	A	3.663e^-4	0.846	INTERGENIC
3L	11459300	3L_11459300_SNP [dm3] 3L_11466200_SNP [dm6]	C	T	3.665e^-4	0.846	UPSTREAM CG6140 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10002321	3L_10002321_SNP [dm3] 3L_10009221_SNP [dm6]	G	A	3.674e^-4	0.846	INTRON dpr6	TF binding site BDTNP1_TFBS_twi
3L	11698041	3L_11698041_SNP [dm3] 3L_11704941_SNP [dm6]	C	T	3.674e^-4	0.846	INTRON CG11658
3L	3270208	3L_3270208_SNP [dm3] 3L_3270208_SNP [dm6]	A	G	3.674e^-4	0.846	UPSTREAM CG14960 INTERGENIC
2L	17142642	2L_17142642_SNP [dm3] 2L_17142642_SNP [dm6]	C	A	3.686e^-4	0.846	INTRON beat-IIIa & 1 other
2L	936218	2L_936218_SNP [dm3] 2L_936218_SNP [dm6]	C	G	3.698e^-4	0.846	INTRON CG4341	TF binding site mE1_TFBS_Trl
2R	7461600	2R_7461600_SNP [dm3] 2R_11574095_SNP [dm6]	G	A	3.741e^-4	0.846	INTERGENIC
2R	11178175	2R_11178175_SNP [dm3] 2R_15290670_SNP [dm6]	T	G	3.750e^-4	0.846	INTRON Trpm
2R	11178177	2R_11178177_DEL [dm3] 2R_15290672_DEL [dm6]	TG	T	3.750e^-4	0.846	INTRON Trpm
X	2365253	X_2365253_SNP [dm3] X_2471220_SNP [dm6]	G	A	3.750e^-4	0.846	INTRON trol
2L	17142874	2L_17142874_SNP [dm3] 2L_17142874_SNP [dm6]	A	G	3.758e^-4	0.846	INTRON beat-IIIa & 1 other
3L	16636596	3L_16636596_SNP [dm3] 3L_16643496_SNP [dm6]	T	C	3.782e^-4	0.846	INTRON Abl
2R	13639790	2R_13639790_SNP [dm3] 2R_17752285_SNP [dm6]	A	T	3.807e^-4	0.846	SYNONYMOUS_CODING CG5002	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19394283	X_19394283_SNP [dm3] X_19500250_SNP [dm6]	A	T	3.832e^-4	0.846	INTRON Pfrx & 1 other
2R	9262010	2R_9262010_SNP [dm3] 2R_13374505_SNP [dm6]	T	C	3.834e^-4	0.846	INTERGENIC
2R	9262064	2R_9262064_MNP [dm3] 2R_13374559_MNP [dm6]	TTT	CAA	3.834e^-4	0.846	INTERGENIC
X	12095517	X_12095517_SNP [dm3] X_12201484_SNP [dm6]	C	G	3.834e^-4	0.846	INTRON Ten-a
X	14689487	X_14689487_SNP [dm3] X_14795454_SNP [dm6]	T	C	3.874e^-4	0.846	SYNONYMOUS_CODING rut
2L	3294061	2L_3294061_INS [dm3] 2L_3294061_INS [dm6]	T	TACAACT	3.929e^-4	0.846	UTR_5_PRIME CG9664 DOWNSTREAM CG9663 INTRON CG9664	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13828028	X_13828028_SNP [dm3] X_13933995_SNP [dm6]	A	G	3.952e^-4	0.846	UPSTREAM mamo INTRON mamo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	12565538	X_12565538_SNP [dm3] X_12671505_SNP [dm6]	C	T	3.976e^-4	0.846	INTRON Tis11
2R	12580525	2R_12580525_SNP [dm3] 2R_16693020_SNP [dm6]	A	G	4.030e^-4	0.846	SYNONYMOUS_CODING CG5210 INTRON CG30463	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17730872	2R_17730872_SNP [dm3] 2R_21843367_SNP [dm6]	T	A	4.030e^-4	0.846	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	15070065	2R_15070065_DEL [dm3] 2R_19182560_DEL [dm6]	AACTTGGAGTATAAA...	A	4.048e^-4	0.846	INTRON hppy
3R	21420892	3R_21420892_SNP [dm3] 3R_25595170_SNP [dm6]	C	A	4.073e^-4	0.846	SYNONYMOUS_CODING msi INTRON ymp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12735794	3L_12735794_SNP [dm3] 3L_12742694_SNP [dm6]	C	T	4.073e^-4	0.846	INTRON CG32112
3L	11648382	3L_11648382_SNP [dm3] 3L_11655282_SNP [dm6]	A	C	4.085e^-4	0.846	INTRON CG32085
3L	9069482	3L_9069482_SNP [dm3] 3L_9076382_SNP [dm6]	A	G	4.085e^-4	0.846	NON_SYNONYMOUS_CODING Tequila INTRON Tequila
3R	19809511	3R_19809511_SNP [dm3] 3R_23983789_SNP [dm6]	T	C	4.085e^-4	0.846	DOWNSTREAM CG31140 EXON CR31451
X	18702557	X_18702557_SNP [dm3] X_18808524_SNP [dm6]	G	A	4.106e^-4	0.846	INTRON CG7058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6095189	2L_6095189_INS [dm3] 2L_6095189_INS [dm6]	T	TG	4.145e^-4	0.846	INTRON Kr-h1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7806762	3L_7806762_SNP [dm3] 3L_7813662_SNP [dm6]	C	T	4.213e^-4	0.846	UTR_3_PRIME Pdp1 DOWNSTREAM Pdp1
2R	7812975	2R_7812975_SNP [dm3] 2R_11925470_SNP [dm6]	A	G	4.220e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_run
2R	7812992	2R_7812992_SNP [dm3] 2R_11925487_SNP [dm6]	T	C	4.220e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_run
2R	7812994	2R_7812994_SNP [dm3] 2R_11925489_SNP [dm6]	T	C	4.220e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_run
X	2365838	X_2365838_SNP [dm3] X_2471805_SNP [dm6]	G	T	4.236e^-4	0.846	INTRON trol
3L	15323353	3L_15323353_SNP [dm3] 3L_15330253_SNP [dm6]	G	A	4.245e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	16760961	3R_16760961_SNP [dm3] 3R_20935239_SNP [dm6]	T	C	4.245e^-4	0.846	INTRON CG31191
3R	21304551	3R_21304551_SNP [dm3] 3R_25478829_SNP [dm6]	A	G	4.245e^-4	0.846	SYNONYMOUS_CODING XNP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24078568	3R_24078568_SNP [dm3] 3R_28252846_SNP [dm6]	G	T	4.245e^-4	0.846	INTERGENIC
3R	24078571	3R_24078571_SNP [dm3] 3R_28252849_SNP [dm6]	T	A	4.245e^-4	0.846	INTERGENIC
3R	22525466	3R_22525466_SNP [dm3] 3R_26699744_SNP [dm6]	T	C	4.261e^-4	0.846	SYNONYMOUS_CODING amon
2L	13513851	2L_13513851_SNP [dm3] 2L_13513851_SNP [dm6]	C	A	4.274e^-4	0.846	INTRON B4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	7719630	3L_7719630_SNP [dm3] 3L_7726530_SNP [dm6]	T	C	4.289e^-4	0.846	UPSTREAM CG7457 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7719662	3L_7719662_SNP [dm3] 3L_7726562_SNP [dm6]	A	T	4.289e^-4	0.846	UPSTREAM CG7457 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20601499	3L_20601499_SNP [dm3] 3L_20608399_SNP [dm6]	G	C	4.291e^-4	0.846	INTRON knrl
3L	10625485	3L_10625485_SNP [dm3] 3L_10632385_SNP [dm6]	T	C	4.356e^-4	0.846	SYNONYMOUS_CODING hay INTRON CG34001	TF binding site mE1_TFBS_sens
3L	10625692	3L_10625692_SNP [dm3] 3L_10632592_SNP [dm6]	G	A	4.356e^-4	0.846	SYNONYMOUS_CODING hay INTRON CG34001	TF binding site mE1_TFBS_sens
3L	7275656	3L_7275656_SNP [dm3] 3L_7282556_SNP [dm6]	C	T	4.356e^-4	0.846	INTRON unc-13-4A
3L	9429327	3L_9429327_SNP [dm3] 3L_9436227_SNP [dm6]	G	A	4.356e^-4	0.846	SYNONYMOUS_CODING MTF-1 UPSTREAM CG42526	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	9429336	3L_9429336_SNP [dm3] 3L_9436236_SNP [dm6]	C	T	4.356e^-4	0.846	SYNONYMOUS_CODING MTF-1 UPSTREAM CG42526	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	26137389	3R_26137389_DEL [dm3] 3R_30311667_DEL [dm6]	CGAGC	C	4.398e^-4	0.846	INTRON hdc
2R	6285046	2R_6285046_SNP [dm3] 2R_10397541_SNP [dm6]	G	A	4.470e^-4	0.846	INTRON CG42732
3R	6961134	3R_6961134_SNP [dm3] 3R_11135412_SNP [dm6]	A	G	4.471e^-4	0.846	INTERGENIC
3R	6961242	3R_6961242_SNP [dm3] 3R_11135520_SNP [dm6]	C	A	4.471e^-4	0.846	INTERGENIC
2R	17347660	2R_17347660_SNP [dm3] 2R_21460155_SNP [dm6]	A	G	4.507e^-4	0.846	INTRON Sdc
3L	5689712	3L_5689712_SNP [dm3] 3L_5696612_SNP [dm6]	A	G	4.515e^-4	0.846	UTR_5_PRIME sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4788919	2L_4788919_SNP [dm3] 2L_4788919_SNP [dm6]	C	T	4.532e^-4	0.846	INTRON CG15630
2L	226904	2L_226904_SNP [dm3] 2L_226904_SNP [dm6]	A	T	4.543e^-4	0.846	INTRON kis
2L	3294034	2L_3294034_SNP [dm3] 2L_3294034_SNP [dm6]	T	C	4.554e^-4	0.846	DOWNSTREAM CG9663 INTRON CG9664	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18037076	3R_18037076_SNP [dm3] 3R_22211354_SNP [dm6]	A	G	4.609e^-4	0.846	UPSTREAM Gld2 INTRON SKIP
3L	2477777	3L_2477777_SNP [dm3] 3L_2477777_SNP [dm6]	C	T	4.628e^-4	0.846	NON_SYNONYMOUS_CODING Cyp4d20 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18597146	2L_18597146_SNP [dm3] 2L_18597146_SNP [dm6]	C	A	4.633e^-4	0.846	UPSTREAM amos INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13854334	3L_13854334_SNP [dm3] 3L_13861234_SNP [dm6]	C	T	4.634e^-4	0.846	SYNONYMOUS_CODING CG8745	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25114030	3R_25114030_SNP [dm3] 3R_29288308_SNP [dm6]	G	A	4.658e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2R	12408455	2R_12408455_SNP [dm3] 2R_16520950_SNP [dm6]	T	A	4.662e^-4	0.846	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9440661	3L_9440661_SNP [dm3] 3L_9447561_SNP [dm6]	C	A	4.663e^-4	0.846	INTRON CG3529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
3L	18368629	3L_18368629_SNP [dm3] 3L_18375529_SNP [dm6]	G	T	4.674e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10885511	3L_10885511_SNP [dm3] 3L_10892411_SNP [dm6]	T	G	4.684e^-4	0.846	UTR_3_PRIME Cpr67Fa2
3L	9065953	3L_9065953_SNP [dm3] 3L_9072853_SNP [dm6]	C	A	4.685e^-4	0.846	UPSTREAM CG4942 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Ubx
3L	7728731	3L_7728731_SNP [dm3] 3L_7735631_SNP [dm6]	T	G	4.687e^-4	0.846	INTRON CG32373 & 1 other
3L	7728736	3L_7728736_SNP [dm3] 3L_7735636_SNP [dm6]	A	T	4.687e^-4	0.846	INTRON CG32373 & 1 other
2R	8393378	2R_8393378_SNP [dm3] 2R_12505873_SNP [dm6]	C	T	4.771e^-4	0.846	INTRON fdl
2R	8393440	2R_8393440_SNP [dm3] 2R_12505935_SNP [dm6]	A	C	4.771e^-4	0.846	INTRON fdl
2R	8404214	2R_8404214_SNP [dm3] 2R_12516709_SNP [dm6]	C	A	4.771e^-4	0.846	SYNONYMOUS_CODING CG13151 DOWNSTREAM CG8818	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3044197	3L_3044197_SNP [dm3] 3L_3044197_SNP [dm6]	G	A	4.771e^-4	0.846	UTR_3_PRIME scramb2 DOWNSTREAM Jafrac2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	5350057	X_5350057_SNP [dm3] X_5456024_SNP [dm6]	T	C	4.771e^-4	0.846	INTRON SPR
3L	20162024	3L_20162024_SNP [dm3] 3L_20168924_SNP [dm6]	G	C	4.787e^-4	0.846	UTR_5_PRIME CG42674 INTRON CG42674	TF binding site BDTNP1_TFBS_twi
2R	9777840	2R_9777840_SNP [dm3] 2R_13890335_SNP [dm6]	A	G	4.812e^-4	0.846	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9777882	2R_9777882_SNP [dm3] 2R_13890377_SNP [dm6]	A	C	4.812e^-4	0.846	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5437308	3L_5437308_SNP [dm3] 3L_5444208_SNP [dm6]	C	T	4.812e^-4	0.846	INTERGENIC
2L	8328059	2L_8328059_SNP [dm3] 2L_8328059_SNP [dm6]	A	T	4.865e^-4	0.846	UPSTREAM CG14275 INTRON CG14275
2R	7461706	2R_7461706_SNP [dm3] 2R_11574201_SNP [dm6]	G	A	4.878e^-4	0.846	INTERGENIC
2L	10046903	2L_10046903_SNP [dm3] 2L_10046903_SNP [dm6]	G	A	4.957e^-4	0.846	INTERGENIC
2L	17244822	2L_17244822_SNP [dm3] 2L_17244822_SNP [dm6]	T	C	4.957e^-4	0.846	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	4298333	3R_4298333_SNP [dm3] 3R_8472611_SNP [dm6]	T	A	4.962e^-4	0.846	INTRON CG45263	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9545516	3R_9545516_SNP [dm3] 3R_13719794_SNP [dm6]	C	T	4.967e^-4	0.846	INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	5452356	X_5452356_SNP [dm3] X_5558323_SNP [dm6]	A	C	4.976e^-4	0.846	INTRON Vsx2
X	5452399	X_5452399_SNP [dm3] X_5558366_SNP [dm6]	T	A	4.976e^-4	0.846	INTRON Vsx2
2L	9546982	2L_9546982_SNP [dm3] 2L_9546982_SNP [dm6]	C	G	4.984e^-4	0.846	SYNONYMOUS_CODING CG13114 DOWNSTREAM jp	TF binding site mE1_TFBS_chinmo
3R	26087319	3R_26087319_SNP [dm3] 3R_30261597_SNP [dm6]	C	A	4.984e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	9458221	2L_9458221_SNP [dm3] 2L_9458221_SNP [dm6]	C	G	5.015e^-4	0.846	INTRON numb
3L	17888482	3L_17888482_DEL [dm3] 3L_17895382_DEL [dm6]	TCATTCAGA	T	5.017e^-4	0.846	INTRON Tsp74F
4	978588	4_978588_INS [dm3] 4_957962_INS [dm6]	A	AAATA	5.042e^-4	0.846	INTRON 4E-T
X	16676488	X_16676488_SNP [dm3] X_16782455_SNP [dm6]	T	C	5.052e^-4	0.846	INTRON if	TF binding site BDTNP1_TFBS_twi
X	2714054	X_2714054_DEL [dm3] X_2820021_DEL [dm6]	GG	G	5.052e^-4	0.846	INTRON kirre
2L	15462777	2L_15462777_SNP [dm3] 2L_15462777_SNP [dm6]	C	T	5.115e^-4	0.846	UPSTREAM CR44863 INTERGENIC
2R	16107256	2R_16107256_SNP [dm3] 2R_20219751_SNP [dm6]	G	A	5.137e^-4	0.846	INTERGENIC
2R	4496920	2R_4496920_SNP [dm3] 2R_8609415_SNP [dm6]	A	G	5.137e^-4	0.846	INTRON rgr	TF binding site mE1_TFBS_cad
3R	13954168	3R_13954168_SNP [dm3] 3R_18128446_SNP [dm6]	G	A	5.139e^-4	0.846	INTRON sr
3R	19838990	3R_19838990_SNP [dm3] 3R_24013268_SNP [dm6]	G	C	5.139e^-4	0.846	INTRON KrT95D
X	16485658	X_16485658_SNP [dm3] X_16591625_SNP [dm6]	C	T	5.165e^-4	0.846	SYNONYMOUS_CODING Cap	TF binding site mE1_TFBS_sens
X	21440004	X_21440004_SNP [dm3] X_21568977_SNP [dm6]	A	C	5.189e^-4	0.846	INTERGENIC
X	8530985	X_8530985_SNP [dm3] X_8636952_SNP [dm6]	G	C	5.191e^-4	0.846	INTRON oc	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9640276	3L_9640276_SNP [dm3] 3L_9647176_SNP [dm6]	G	T	5.201e^-4	0.846	INTRON fry & 1 other
2R	11081086	2R_11081086_SNP [dm3] 2R_15193581_SNP [dm6]	A	G	5.206e^-4	0.846	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
X	15849356	X_15849356_SNP [dm3] X_15955323_SNP [dm6]	T	A	5.207e^-4	0.846	INTRON mmd	TF binding site mE1_TFBS_HSA
X	15849429	X_15849429_DEL [dm3] X_15955396_DEL [dm6]	ATCATCA	A	5.207e^-4	0.846	INTRON mmd	TF binding site mE1_TFBS_HSA
X	15849443	X_15849443_SNP [dm3] X_15955410_SNP [dm6]	G	A	5.207e^-4	0.846	INTRON mmd	TF binding site mE1_TFBS_HSA
2L	2820012	2L_2820012_SNP [dm3] 2L_2820012_SNP [dm6]	G	T	5.209e^-4	0.846	SYNONYMOUS_CODING Duox
2L	6826581	2L_6826581_SNP [dm3] 2L_6826581_SNP [dm6]	C	T	5.209e^-4	0.846	INTRON sens-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11984018	2R_11984018_SNP [dm3] 2R_16096513_SNP [dm6]	C	A	5.237e^-4	0.846	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11984021	2R_11984021_SNP [dm3] 2R_16096516_SNP [dm6]	G	A	5.237e^-4	0.846	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15172865	2R_15172865_DEL [dm3] 2R_19285360_DEL [dm6]	GATATGATATGA...	G	5.237e^-4	0.846	UPSTREAM CG10476 DOWNSTREAM CG10474 INTERGENIC
2R	7783290	2R_7783290_SNP [dm3] 2R_11895785_SNP [dm6]	T	C	5.237e^-4	0.846	DOWNSTREAM MCPH1 & 1 other INTERGENIC
2R	8592102	2R_8592102_DEL [dm3] 2R_12704597_DEL [dm6]	TCA	T	5.237e^-4	0.846	UPSTREAM CG42663 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10281984	3L_10281984_SNP [dm3] 3L_10288884_SNP [dm6]	G	A	5.237e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13255579	3L_13255579_SNP [dm3] 3L_13262479_SNP [dm6]	A	T	5.237e^-4	0.846	INTRON caps
3L	4109727	3L_4109727_SNP [dm3] 3L_4109727_SNP [dm6]	C	T	5.237e^-4	0.846	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11348782	3R_11348782_SNP [dm3] 3R_15523060_SNP [dm6]	A	G	5.237e^-4	0.846	INTERGENIC
X	13852862	X_13852862_SNP [dm3] X_13958829_SNP [dm6]	A	T	5.237e^-4	0.846	INTRON mamo
X	16343970	X_16343970_SNP [dm3] X_16449937_SNP [dm6]	T	C	5.237e^-4	0.846	SYNONYMOUS_CODING Rbp2	TF binding site BDTNP1_TFBS_dl
X	16344135	X_16344135_SNP [dm3] X_16450102_SNP [dm6]	G	A	5.237e^-4	0.846	SYNONYMOUS_CODING Rbp2
X	16344257	X_16344257_SNP [dm3] X_16450224_SNP [dm6]	G	A	5.237e^-4	0.846	INTRON Rbp2
3L	14808276	3L_14808276_SNP [dm3] 3L_14815176_SNP [dm6]	A	C	5.242e^-4	0.846	INTRON CG17839
3L	18483976	3L_18483976_SNP [dm3] 3L_18490876_SNP [dm6]	C	A	5.254e^-4	0.846	INTRON AstC-R2
X	16160500	X_16160500_SNP [dm3] X_16266467_SNP [dm6]	A	C	5.254e^-4	0.846	NON_SYNONYMOUS_CODING CG12507 DOWNSTREAM kat80
3R	19365476	3R_19365476_SNP [dm3] 3R_23539754_SNP [dm6]	A	G	5.260e^-4	0.846	UPSTREAM CG10168 INTERGENIC
3L	16257732	3L_16257732_SNP [dm3] 3L_16264632_SNP [dm6]	A	T	5.267e^-4	0.846	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16257733	3L_16257733_SNP [dm3] 3L_16264633_SNP [dm6]	A	G	5.267e^-4	0.846	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	21446465	3L_21446465_INS [dm3] 3L_21453365_INS [dm6]	A	AA	5.270e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	10322700	3L_10322700_SNP [dm3] 3L_10329600_SNP [dm6]	T	C	5.290e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_Kr
3R	18875748	3R_18875748_SNP [dm3] 3R_23050026_SNP [dm6]	G	A	5.296e^-4	0.846	INTRON p53
X	17014950	X_17014950_SNP [dm3] X_17120917_SNP [dm6]	T	C	5.299e^-4	0.846	INTRON CG5004
3R	21932312	3R_21932312_SNP [dm3] 3R_26106590_SNP [dm6]	C	T	5.335e^-4	0.846	UPSTREAM CG31324 INTERGENIC
2R	14336997	2R_14336997_SNP [dm3] 2R_18449492_SNP [dm6]	A	C	5.362e^-4	0.846	SYNONYMOUS_CODING Prp19 DOWNSTREAM CG5189 & 1 other	TF binding site mE1_TFBS_cad
2R	14337045	2R_14337045_SNP [dm3] 2R_18449540_SNP [dm6]	G	A	5.362e^-4	0.846	SYNONYMOUS_CODING Prp19 DOWNSTREAM CG5189 & 1 other	TF binding site mE1_TFBS_cad
3L	12735765	3L_12735765_SNP [dm3] 3L_12742665_SNP [dm6]	T	A	5.362e^-4	0.846	INTRON CG32112
3L	12744738	3L_12744738_SNP [dm3] 3L_12751638_SNP [dm6]	G	A	5.362e^-4	0.846	SYNONYMOUS_CODING CG10984	TF binding site mE1_TFBS_sens
3L	948744	3L_948744_SNP [dm3] 3L_948744_SNP [dm6]	G	T	5.362e^-4	0.846	INTRON Glut1
3L	948748	3L_948748_SNP [dm3] 3L_948748_SNP [dm6]	T	C	5.362e^-4	0.846	INTRON Glut1
X	5341154	X_5341154_SNP [dm3] X_5447121_SNP [dm6]	C	T	5.362e^-4	0.846	INTRON SPR
2L	7551191	2L_7551191_SNP [dm3] 2L_7551191_SNP [dm6]	C	A	5.365e^-4	0.846	INTRON RapGAP1
2L	8671315	2L_8671315_DEL [dm3] 2L_8671315_DEL [dm6]	ATAATA	A	5.367e^-4	0.846	UTR_3_PRIME Sema-1a
2R	11896197	2R_11896197_DEL [dm3] 2R_16008692_DEL [dm6]	GG	G	5.367e^-4	0.846	DOWNSTREAM CG8388 INTRON CG8389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	3519274	X_3519274_SNP [dm3] X_3625241_SNP [dm6]	G	A	5.367e^-4	0.846	INTRON AstA-R1
X	2875570	X_2875570_SNP [dm3] X_2981537_SNP [dm6]	G	C	5.384e^-4	0.846	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	18858675	3L_18858675_SNP [dm3] 3L_18865575_SNP [dm6]	T	C	5.386e^-4	0.846	UPSTREAM CG14074 DOWNSTREAM CG6865 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	4588794	X_4588794_SNP [dm3] X_4694761_SNP [dm6]	C	T	5.414e^-4	0.846	INTRON ctp	TF binding site mE1_TFBS_Trl
2R	16988372	2R_16988372_SNP [dm3] 2R_21100867_SNP [dm6]	C	T	5.414e^-4	0.846	SYNONYMOUS_CODING CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	17300865	2R_17300865_SNP [dm3] 2R_21413360_SNP [dm6]	T	G	5.414e^-4	0.846	INTRON Sdc
2R	19797535	2R_19797535_SNP [dm3] 2R_23910012_SNP [dm6]	C	T	5.414e^-4	0.846	UPSTREAM kcc INTRON kcc
2R	19797547	2R_19797547_SNP [dm3] 2R_23910024_SNP [dm6]	T	C	5.414e^-4	0.846	UPSTREAM kcc INTRON kcc
3L	1860641	3L_1860641_SNP [dm3] 3L_1860641_SNP [dm6]	G	T	5.414e^-4	0.846	UTR_3_PRIME R	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16229883	2L_16229883_SNP [dm3] 2L_16229883_SNP [dm6]	A	T	5.427e^-4	0.846	INTERGENIC
2L	16229884	2L_16229884_SNP [dm3] 2L_16229884_SNP [dm6]	T	A	5.427e^-4	0.846	INTERGENIC
3L	13858228	3L_13858228_SNP [dm3] 3L_13865128_SNP [dm6]	A	G	5.444e^-4	0.846	INTRON CG8745	TF binding site mE1_TFBS_inv
3L	13858890	3L_13858890_INS [dm3] 3L_13865790_INS [dm6]	C	CA	5.444e^-4	0.846	INTRON CG8745	TF binding site mE1_TFBS_inv
3R	26278150	3R_26278150_SNP [dm3] 3R_30452428_SNP [dm6]	C	G	5.467e^-4	0.846	INTRON aralar1
2R	7471717	2R_7471717_SNP [dm3] 2R_11584212_SNP [dm6]	C	G	5.489e^-4	0.846	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7474700	2R_7474700_SNP [dm3] 2R_11587195_SNP [dm6]	A	G	5.489e^-4	0.846	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
3L	10355755	3L_10355755_SNP [dm3] 3L_10362655_SNP [dm6]	A	C	5.505e^-4	0.846	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10355757	3L_10355757_SNP [dm3] 3L_10362657_SNP [dm6]	A	G	5.505e^-4	0.846	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10355760	3L_10355760_SNP [dm3] 3L_10362660_SNP [dm6]	G	T	5.505e^-4	0.846	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10355786	3L_10355786_SNP [dm3] 3L_10362686_SNP [dm6]	C	A	5.505e^-4	0.846	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10355808	3L_10355808_SNP [dm3] 3L_10362708_SNP [dm6]	A	T	5.505e^-4	0.846	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10355838	3L_10355838_SNP [dm3] 3L_10362738_SNP [dm6]	T	C	5.505e^-4	0.846	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10355842	3L_10355842_SNP [dm3] 3L_10362742_SNP [dm6]	G	A	5.505e^-4	0.846	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10355852	3L_10355852_SNP [dm3] 3L_10362752_SNP [dm6]	T	C	5.505e^-4	0.846	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11525023	3L_11525023_SNP [dm3] 3L_11531923_SNP [dm6]	C	G	5.506e^-4	0.846	INTRON Mob2
3L	9658848	3L_9658848_SNP [dm3] 3L_9665748_SNP [dm6]	T	C	5.511e^-4	0.846	INTRON fry
2R	6326716	2R_6326716_SNP [dm3] 2R_10439211_SNP [dm6]	A	G	5.514e^-4	0.846	UPSTREAM Galphao INTRON Galphao	TF binding site BDTNP1_TFBS_dl
X	16160510	X_16160510_SNP [dm3] X_16266477_SNP [dm6]	T	G	5.525e^-4	0.846	SYNONYMOUS_CODING CG12507 DOWNSTREAM kat80
2L	11758638	2L_11758638_SNP [dm3] 2L_11758638_SNP [dm6]	T	C	5.536e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25356158	3R_25356158_SNP [dm3] 3R_29530436_SNP [dm6]	C	A	5.541e^-4	0.846	INTERGENIC
3R	11210981	3R_11210981_SNP [dm3] 3R_15385259_SNP [dm6]	T	A	5.545e^-4	0.846	NON_SYNONYMOUS_CODING Rbp	TF binding site mE1_TFBS_chinmo
3R	21675748	3R_21675748_SNP [dm3] 3R_25850026_SNP [dm6]	A	C	5.545e^-4	0.846	DOWNSTREAM CG14545 INTERGENIC
3L	11696410	3L_11696410_SNP [dm3] 3L_11703310_SNP [dm6]	C	A	5.546e^-4	0.846	INTRON CG11658
3R	19365491	3R_19365491_SNP [dm3] 3R_23539769_SNP [dm6]	G	T	5.555e^-4	0.846	UPSTREAM CG10168 INTERGENIC
2R	4070195	2R_4070195_SNP [dm3] 2R_8182690_SNP [dm6]	T	A	5.561e^-4	0.846	INTRON LRP1
3R	23516199	3R_23516199_SNP [dm3] 3R_27690477_SNP [dm6]	A	T	5.573e^-4	0.846	INTRON CG12880	TF binding site mE1_TFBS_chinmo
2L	8670785	2L_8670785_SNP [dm3] 2L_8670785_SNP [dm6]	A	G	5.580e^-4	0.846	UTR_3_PRIME Sema-1a DOWNSTREAM Sema-1a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2443879	2R_2443879_SNP [dm3] 2R_6556374_SNP [dm6]	G	A	5.601e^-4	0.846	INTRON jing
2L	7637849	2L_7637849_SNP [dm3] 2L_7637849_SNP [dm6]	T	A	5.603e^-4	0.846	DOWNSTREAM CR44800 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	17337214	2R_17337214_SNP [dm3] 2R_21449709_SNP [dm6]	G	A	5.617e^-4	0.846	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9916591	2L_9916591_SNP [dm3] 2L_9916591_SNP [dm6]	G	A	5.644e^-4	0.846	SYNONYMOUS_CODING yip2 DOWNSTREAM CG5885	TF binding site mE1_TFBS_chinmo
2L	2969982	2L_2969982_SNP [dm3] 2L_2969982_SNP [dm6]	A	G	5.646e^-4	0.846	UTR_3_PRIME Rrp1 UPSTREAM Ts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2969983	2L_2969983_SNP [dm3] 2L_2969983_SNP [dm6]	G	A	5.646e^-4	0.846	UTR_3_PRIME Rrp1 UPSTREAM Ts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	5904222	X_5904222_INS [dm3] X_6010189_INS [dm6]	A	AC	5.672e^-4	0.846	INTRON mab-21
3L	11692006	3L_11692006_SNP [dm3] 3L_11698906_SNP [dm6]	C	T	5.685e^-4	0.846	SYNONYMOUS_CODING CG6053 DOWNSTREAM CG11658	TF binding site mE1_TFBS_chinmo
3L	17615531	3L_17615531_SNP [dm3] 3L_17622431_SNP [dm6]	G	T	5.705e^-4	0.846	SYNONYMOUS_CODING CG7510 UPSTREAM CG6259	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	11648386	3L_11648386_SNP [dm3] 3L_11655286_SNP [dm6]	C	A	5.749e^-4	0.846	INTRON CG32085
3L	9069513	3L_9069513_SNP [dm3] 3L_9076413_SNP [dm6]	A	G	5.749e^-4	0.846	SYNONYMOUS_CODING Tequila INTRON Tequila
2R	3092563	2R_3092563_SNP [dm3] 2R_7205058_SNP [dm6]	G	A	5.778e^-4	0.846	INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11751061	3L_11751061_SNP [dm3] 3L_11757961_SNP [dm6]	G	T	5.794e^-4	0.846	INTRON CG6024
3L	11751121	3L_11751121_SNP [dm3] 3L_11758021_SNP [dm6]	G	A	5.794e^-4	0.846	INTRON CG6024
3L	11751152	3L_11751152_SNP [dm3] 3L_11758052_SNP [dm6]	T	G	5.794e^-4	0.846	INTRON CG6024
3L	11751169	3L_11751169_SNP [dm3] 3L_11758069_SNP [dm6]	C	T	5.794e^-4	0.846	INTRON CG6024
3L	11751177	3L_11751177_SNP [dm3] 3L_11758077_SNP [dm6]	T	A	5.794e^-4	0.846	INTRON CG6024
3R	21418728	3R_21418728_SNP [dm3] 3R_25593006_SNP [dm6]	G	A	5.799e^-4	0.846	UTR_3_PRIME ymp INTRON msi & 1 other
2L	11085325	2L_11085325_SNP [dm3] 2L_11085325_SNP [dm6]	A	T	5.924e^-4	0.846	UPSTREAM AstCC INTERGENIC
2L	2819780	2L_2819780_SNP [dm3] 2L_2819780_SNP [dm6]	G	T	5.924e^-4	0.846	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad
2L	3325232	2L_3325232_SNP [dm3] 2L_3325232_SNP [dm6]	C	T	5.924e^-4	0.846	SYNONYMOUS_CODING CG33281
2L	6814043	2L_6814043_SNP [dm3] 2L_6814043_SNP [dm6]	G	T	5.924e^-4	0.846	DOWNSTREAM CR44081 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6814092	2L_6814092_SNP [dm3] 2L_6814092_SNP [dm6]	C	A	5.924e^-4	0.846	DOWNSTREAM CR44081 INTERGENIC
2L	6814114	2L_6814114_SNP [dm3] 2L_6814114_SNP [dm6]	T	C	5.924e^-4	0.846	INTERGENIC
2L	9567879	2L_9567879_SNP [dm3] 2L_9567879_SNP [dm6]	T	G	5.924e^-4	0.846	DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9567881	2L_9567881_SNP [dm3] 2L_9567881_SNP [dm6]	C	T	5.924e^-4	0.846	DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9585824	2L_9585824_SNP [dm3] 2L_9585824_SNP [dm6]	T	G	5.924e^-4	0.846	INTRON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19107548	2R_19107548_SNP [dm3] 2R_23220025_SNP [dm6]	G	C	5.924e^-4	0.846	INTERGENIC
2R	7063577	2R_7063577_SNP [dm3] 2R_11176072_SNP [dm6]	A	C	5.924e^-4	0.846	INTRON shn
2R	8585552	2R_8585552_SNP [dm3] 2R_12698047_SNP [dm6]	C	T	5.924e^-4	0.846	INTERGENIC
2R	9739662	2R_9739662_SNP [dm3] 2R_13852157_SNP [dm6]	C	T	5.924e^-4	0.846	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG6543
3L	17615749	3L_17615749_SNP [dm3] 3L_17622649_SNP [dm6]	T	C	5.924e^-4	0.846	INTRON CG7510
X	8465183	X_8465183_SNP [dm3] X_8571150_SNP [dm6]	A	G	5.924e^-4	0.846	UTR_3_PRIME spirit UPSTREAM CG12111 DOWNSTREAM Trf4-1	TF binding site BDTNP1_TFBS_da
3R	7633796	3R_7633796_SNP [dm3] 3R_11808074_SNP [dm6]	A	G	6.001e^-4	0.846	INTRON ClC-a
2L	6591547	2L_6591547_SNP [dm3] 2L_6591547_SNP [dm6]	T	C	6.019e^-4	0.846	INTRON CG11319
2L	9582021	2L_9582021_SNP [dm3] 2L_9582021_SNP [dm6]	G	T	6.032e^-4	0.846	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	19558962	X_19558962_SNP [dm3] X_19664929_SNP [dm6]	T	C	6.058e^-4	0.846	SPLICE_SITE_REGION Ssu72 UPSTREAM CG14223 INTRON Ssu72	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9658759	3L_9658759_SNP [dm3] 3L_9665659_SNP [dm6]	A	G	6.059e^-4	0.846	SYNONYMOUS_CODING fry INTRON fry
2R	17337206	2R_17337206_SNP [dm3] 2R_21449701_SNP [dm6]	A	T	6.067e^-4	0.846	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17337208	2R_17337208_SNP [dm3] 2R_21449703_SNP [dm6]	T	A	6.067e^-4	0.846	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9579294	3L_9579294_SNP [dm3] 3L_9586194_SNP [dm6]	C	G	6.148e^-4	0.846	INTRON CG42673
2L	12110377	2L_12110377_SNP [dm3] 2L_12110377_SNP [dm6]	T	C	6.155e^-4	0.846	SYNONYMOUS_CODING Phae1 UPSTREAM Phae2	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	10937903	2R_10937903_SNP [dm3] 2R_15050398_SNP [dm6]	T	G	6.196e^-4	0.846	UPSTREAM CR43622 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_inv
X	19627078	X_19627078_SNP [dm3] X_19733045_SNP [dm6]	C	T	6.196e^-4	0.846	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6166717	2L_6166717_INS [dm3] 2L_6166717_INS [dm6]	T	AC	6.205e^-4	0.846	INTERGENIC
3L	5446040	3L_5446040_SNP [dm3] 3L_5452940_SNP [dm6]	G	A	6.213e^-4	0.846	INTERGENIC
3L	10125502	3L_10125502_SNP [dm3] 3L_10132402_SNP [dm6]	G	A	6.220e^-4	0.846	INTRON dpr6
3R	19797307	3R_19797307_SNP [dm3] 3R_23971585_SNP [dm6]	A	T	6.231e^-4	0.846	INTRON CG31140	TF binding site mE1_TFBS_Trl
X	16897074	X_16897074_INS [dm3] X_17003041_INS [dm6]	G	GA	6.250e^-4	0.846	INTRON CG45002
3L	5207675	3L_5207675_DEL [dm3] 3L_5214575_DEL [dm6]	CATCC	C	6.317e^-4	0.846	INTRON shep
2L	9458134	2L_9458134_DEL [dm3] 2L_9458134_DEL [dm6]	TT	T	6.329e^-4	0.846	INTRON numb
2L	9722090	2L_9722090_SNP [dm3] 2L_9722090_SNP [dm6]	A	T	6.340e^-4	0.846	INTRON Nckx30C
2R	7509605	2R_7509605_SNP [dm3] 2R_11622100_SNP [dm6]	A	T	6.352e^-4	0.846	SYNONYMOUS_CODING CG9005	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9421798	3L_9421798_SNP [dm3] 3L_9428698_SNP [dm6]	A	C	6.358e^-4	0.846	DOWNSTREAM RpS17 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19202564	X_19202564_SNP [dm3] X_19308531_SNP [dm6]	T	C	6.367e^-4	0.846	UPSTREAM CG8051 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9545617	3R_9545617_SNP [dm3] 3R_13719895_SNP [dm6]	T	C	6.376e^-4	0.846	INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25342587	3R_25342587_SNP [dm3] 3R_29516865_SNP [dm6]	A	C	6.420e^-4	0.846	DOWNSTREAM CG2014 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9586439	2L_9586439_SNP [dm3] 2L_9586439_SNP [dm6]	G	C	6.443e^-4	0.846	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	10723883	2L_10723883_SNP [dm3] 2L_10723883_SNP [dm6]	G	A	6.461e^-4	0.846	UPSTREAM CG6431 INTERGENIC
2L	17345817	2L_17345817_SNP [dm3] 2L_17345817_SNP [dm6]	A	T	6.494e^-4	0.846	INTERGENIC
2L	17345818	2L_17345818_SNP [dm3] 2L_17345818_SNP [dm6]	T	G	6.494e^-4	0.846	INTERGENIC
2L	17345829	2L_17345829_SNP [dm3] 2L_17345829_SNP [dm6]	G	A	6.494e^-4	0.846	INTERGENIC
2L	17345834	2L_17345834_SNP [dm3] 2L_17345834_SNP [dm6]	A	T	6.494e^-4	0.846	INTERGENIC
X	15956061	X_15956061_SNP [dm3] X_16062028_SNP [dm6]	C	G	6.518e^-4	0.846	SYNONYMOUS_CODING CG12395 DOWNSTREAM Muc14A
2R	15844103	2R_15844103_SNP [dm3] 2R_19956598_SNP [dm6]	T	C	6.540e^-4	0.846	SYNONYMOUS_CODING CG44623
2R	7225764	2R_7225764_SNP [dm3] 2R_11338259_SNP [dm6]	G	C	6.542e^-4	0.846	SYNONYMOUS_CODING kappaTry DOWNSTREAM lambdaTry & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5445268	3L_5445268_SNP [dm3] 3L_5452168_SNP [dm6]	T	C	6.542e^-4	0.846	INTERGENIC
3L	6745701	3L_6745701_SNP [dm3] 3L_6752601_SNP [dm6]	G	T	6.542e^-4	0.846	UTR_5_PRIME velo UPSTREAM CG8549	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
X	15087736	X_15087736_SNP [dm3] X_15193703_SNP [dm6]	G	A	6.587e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15087762	X_15087762_SNP [dm3] X_15193729_SNP [dm6]	C	A	6.587e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8539921	X_8539921_SNP [dm3] X_8645888_SNP [dm6]	A	G	6.587e^-4	0.846	INTRON oc
X	904262	X_904262_SNP [dm3] X_1010229_SNP [dm6]	A	T	6.587e^-4	0.846	DOWNSTREAM TfIIA-S-2 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	919077	X_919077_SNP [dm3] X_1025044_SNP [dm6]	A	G	6.587e^-4	0.846	INTRON su_w[a]_ & 2 others	transposable element FlyBase
X	919506	X_919506_SNP [dm3] X_1025473_SNP [dm6]	A	G	6.587e^-4	0.846	INTRON su_w[a]_ & 2 others	transposable element FlyBase
2R	4136175	2R_4136175_SNP [dm3] 2R_8248670_SNP [dm6]	G	A	6.590e^-4	0.846	DOWNSTREAM CG44439 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	17118065	2L_17118065_SNP [dm3] 2L_17118065_SNP [dm6]	G	A	6.615e^-4	0.846	INTERGENIC
2L	20563024	2L_20563024_SNP [dm3] 2L_20563024_SNP [dm6]	T	C	6.784e^-4	0.846	DOWNSTREAM mir-4973 INTRON CR45347
2L	10748519	2L_10748519_SNP [dm3] 2L_10748519_SNP [dm6]	G	A	6.793e^-4	0.846	INTRON CG17124	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10748591	2L_10748591_SNP [dm3] 2L_10748591_SNP [dm6]	C	T	6.793e^-4	0.846	INTRON CG17124	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8401827	2R_8401827_SNP [dm3] 2R_12514322_SNP [dm6]	A	G	6.897e^-4	0.846	INTRON achi
3L	9815188	3L_9815188_SNP [dm3] 3L_9822088_SNP [dm6]	A	G	6.897e^-4	0.846	INTRON CG43897
3L	9815190	3L_9815190_SNP [dm3] 3L_9822090_SNP [dm6]	T	A	6.897e^-4	0.846	INTRON CG43897
3L	9815196	3L_9815196_INS [dm3] 3L_9822096_INS [dm6]	A	AAATA	6.897e^-4	0.846	INTRON CG43897
3L	9562752	3L_9562752_SNP [dm3] 3L_9569652_SNP [dm6]	T	A	6.967e^-4	0.846	INTRON CG42673
3R	26527646	3R_26527646_SNP [dm3] 3R_30701924_SNP [dm6]	G	T	6.967e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26527689	3R_26527689_SNP [dm3] 3R_30701967_SNP [dm6]	T	A	6.967e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26527727	3R_26527727_SNP [dm3] 3R_30702005_SNP [dm6]	C	A	6.967e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_inv
3R	6291389	3R_6291389_SNP [dm3] 3R_10465667_SNP [dm6]	T	C	6.967e^-4	0.846	UPSTREAM CR44955 INTERGENIC
X	21329497	X_21329497_DEL [dm3] X_21458470_DEL [dm6]	GAAGCAAG	G	7.022e^-4	0.846	UPSTREAM CG42343 INTERGENIC
2R	6937439	2R_6937439_SNP [dm3] 2R_11049934_SNP [dm6]	A	G	7.024e^-4	0.846	INTRON luna
2R	10352610	2R_10352610_SNP [dm3] 2R_14465105_SNP [dm6]	T	C	7.054e^-4	0.846	SYNONYMOUS_CODING Oaz	TF binding site mE1_TFBS_cad
2R	10352612	2R_10352612_SNP [dm3] 2R_14465107_SNP [dm6]	C	A	7.054e^-4	0.846	NON_SYNONYMOUS_CODING Oaz	TF binding site mE1_TFBS_cad
X	2880763	X_2880763_SNP [dm3] X_2986730_SNP [dm6]	A	T	7.054e^-4	0.846	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med
X	4084127	X_4084127_SNP [dm3] X_4190094_SNP [dm6]	A	G	7.054e^-4	0.846	INTRON Fas2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8656502	3L_8656502_SNP [dm3] 3L_8663402_SNP [dm6]	T	C	7.055e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8656503	3L_8656503_SNP [dm3] 3L_8663403_SNP [dm6]	T	C	7.055e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16986849	2R_16986849_SNP [dm3] 2R_21099344_SNP [dm6]	A	G	7.056e^-4	0.846	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	17798851	2R_17798851_SNP [dm3] 2R_21911346_SNP [dm6]	T	G	7.056e^-4	0.846	INTRON Fili
2R	12246194	2R_12246194_SNP [dm3] 2R_16358689_SNP [dm6]	G	A	7.095e^-4	0.846	DOWNSTREAM CR45322 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12246218	2R_12246218_SNP [dm3] 2R_16358713_SNP [dm6]	G	A	7.095e^-4	0.846	DOWNSTREAM CR45322 & 1 other INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	12246220	2R_12246220_SNP [dm3] 2R_16358715_SNP [dm6]	T	C	7.095e^-4	0.846	DOWNSTREAM CR45322 & 1 other INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	12246232	2R_12246232_SNP [dm3] 2R_16358727_SNP [dm6]	T	A	7.095e^-4	0.846	DOWNSTREAM CR45322 & 1 other INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	12246258	2R_12246258_SNP [dm3] 2R_16358753_SNP [dm6]	A	C	7.095e^-4	0.846	UPSTREAM CG6262 DOWNSTREAM CR45322 & 1 other INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	12246289	2R_12246289_SNP [dm3] 2R_16358784_SNP [dm6]	T	A	7.095e^-4	0.846	UPSTREAM CG6262 DOWNSTREAM CR45322 & 1 other INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	12246293	2R_12246293_SNP [dm3] 2R_16358788_SNP [dm6]	T	A	7.095e^-4	0.846	UPSTREAM CG6262 DOWNSTREAM CR45322 & 1 other INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	12246310	2R_12246310_SNP [dm3] 2R_16358805_SNP [dm6]	G	A	7.095e^-4	0.846	UPSTREAM CG6262 DOWNSTREAM CR43416 EXON CR45322	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	12246331	2R_12246331_SNP [dm3] 2R_16358826_SNP [dm6]	A	C	7.095e^-4	0.846	UPSTREAM CG6262 DOWNSTREAM CR43416 EXON CR45322	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	17274619	2R_17274619_SNP [dm3] 2R_21387114_SNP [dm6]	A	C	7.095e^-4	0.846	UPSTREAM EfSec INTRON Acox57D-p	TF binding site mE1_TFBS_sens
3R	22769171	3R_22769171_SNP [dm3] 3R_26943449_SNP [dm6]	A	G	7.095e^-4	0.846	SYNONYMOUS_CODING sda	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	13111871	2R_13111871_SNP [dm3] 2R_17224366_SNP [dm6]	G	A	7.129e^-4	0.846	INTRON mbl
2L	9463673	2L_9463673_SNP [dm3] 2L_9463673_SNP [dm6]	A	C	7.130e^-4	0.846	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
2L	9463697	2L_9463697_SNP [dm3] 2L_9463697_SNP [dm6]	A	G	7.130e^-4	0.846	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
2R	12246140	2R_12246140_SNP [dm3] 2R_16358635_SNP [dm6]	A	G	7.146e^-4	0.846	DOWNSTREAM CR45322 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14445683	2L_14445683_SNP [dm3] 2L_14445683_SNP [dm6]	A	G	7.181e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	4237048	X_4237048_SNP [dm3] X_4343015_SNP [dm6]	A	T	7.216e^-4	0.846	INTRON norpA
3L	7719564	3L_7719564_SNP [dm3] 3L_7726464_SNP [dm6]	A	C	7.238e^-4	0.846	UTR_5_PRIME CG7457 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13419852	3R_13419852_SNP [dm3] 3R_17594130_SNP [dm6]	T	C	7.238e^-4	0.846	UPSTREAM CG7587 INTERGENIC
3R	13419861	3R_13419861_SNP [dm3] 3R_17594139_SNP [dm6]	G	A	7.238e^-4	0.846	UPSTREAM CG7587 INTERGENIC
3R	26138071	3R_26138071_SNP [dm3] 3R_30312349_SNP [dm6]	T	C	7.238e^-4	0.846	INTRON hdc	TF binding site mE1_TFBS_chinmo
3R	7133174	3R_7133174_SNP [dm3] 3R_11307452_SNP [dm6]	A	G	7.238e^-4	0.846	INTERGENIC
3R	17390326	3R_17390326_SNP [dm3] 3R_21564604_SNP [dm6]	T	G	7.278e^-4	0.846	INTERGENIC
3L	1679206	3L_1679206_SNP [dm3] 3L_1679206_SNP [dm6]	C	A	7.325e^-4	0.846	INTRON CG7991
3R	21393375	3R_21393375_SNP [dm3] 3R_25567653_SNP [dm6]	A	C	7.382e^-4	0.846	INTRON msi
3R	11350785	3R_11350785_SNP [dm3] 3R_15525063_SNP [dm6]	C	T	7.388e^-4	0.846	INTERGENIC
3R	11350893	3R_11350893_SNP [dm3] 3R_15525171_SNP [dm6]	A	G	7.388e^-4	0.846	INTERGENIC
3R	21244785	3R_21244785_SNP [dm3] 3R_25419063_SNP [dm6]	A	C	7.388e^-4	0.846	INTRON Fur1	TF binding site mE1_TFBS_bab1
3R	6961006	3R_6961006_SNP [dm3] 3R_11135284_SNP [dm6]	G	T	7.388e^-4	0.846	INTERGENIC
3R	6961088	3R_6961088_SNP [dm3] 3R_11135366_SNP [dm6]	A	G	7.388e^-4	0.846	INTERGENIC
3R	6961110	3R_6961110_SNP [dm3] 3R_11135388_SNP [dm6]	C	T	7.388e^-4	0.846	INTERGENIC
3R	6961114	3R_6961114_SNP [dm3] 3R_11135392_SNP [dm6]	G	A	7.388e^-4	0.846	INTERGENIC
3R	6961127	3R_6961127_SNP [dm3] 3R_11135405_SNP [dm6]	C	T	7.388e^-4	0.846	INTERGENIC
3R	6961131	3R_6961131_SNP [dm3] 3R_11135409_SNP [dm6]	A	T	7.388e^-4	0.846	INTERGENIC
3R	6961281	3R_6961281_SNP [dm3] 3R_11135559_SNP [dm6]	A	C	7.388e^-4	0.846	INTERGENIC
3R	6961512	3R_6961512_SNP [dm3] 3R_11135790_SNP [dm6]	G	A	7.388e^-4	0.846	INTERGENIC
X	16344210	X_16344210_SNP [dm3] X_16450177_SNP [dm6]	T	C	7.388e^-4	0.846	SPLICE_SITE_REGION Rbp2 SYNONYMOUS_CODING Rbp2
3L	12746879	3L_12746879_SNP [dm3] 3L_12753779_SNP [dm6]	C	G	7.393e^-4	0.846	SYNONYMOUS_CODING CG10973 DOWNSTREAM CG10984
3L	14953507	3L_14953507_SNP [dm3] 3L_14960407_SNP [dm6]	T	G	7.408e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
X	8282512	X_8282512_SNP [dm3] X_8388479_SNP [dm6]	G	A	7.448e^-4	0.846	INTRON CG1387	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4026366	3L_4026366_DEL [dm3] 3L_4026366_DEL [dm6]	ACTA	A	7.471e^-4	0.846	UPSTREAM Gr64a & 1 other INTERGENIC
3L	10482828	3L_10482828_SNP [dm3] 3L_10489728_SNP [dm6]	A	G	7.475e^-4	0.846	INTRON A2bp1
2L	12887337	2L_12887337_SNP [dm3] 2L_12887337_SNP [dm6]	A	G	7.493e^-4	0.846	INTERGENIC
3L	2687580	3L_2687580_SNP [dm3] 3L_2687580_SNP [dm6]	G	A	7.493e^-4	0.846	INTRON Fife
3L	2687660	3L_2687660_SNP [dm3] 3L_2687660_SNP [dm6]	G	T	7.493e^-4	0.846	INTRON Fife
X	3132529	X_3132529_SNP [dm3] X_3238496_SNP [dm6]	A	G	7.508e^-4	0.846	INTRON dnc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	485465	3L_485465_SNP [dm3] 3L_485465_SNP [dm6]	T	C	7.513e^-4	0.846	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9458564	2L_9458564_SNP [dm3] 2L_9458564_SNP [dm6]	A	G	7.564e^-4	0.846	INTRON numb
2L	1289062	2L_1289062_SNP [dm3] 2L_1289062_SNP [dm6]	G	T	7.599e^-4	0.846	INTRON robo3
3L	20152884	3L_20152884_SNP [dm3] 3L_20159784_SNP [dm6]	G	T	7.613e^-4	0.846	INTRON CG42674
2R	2774518	2R_2774518_SNP [dm3] 2R_6887013_SNP [dm6]	G	A	7.619e^-4	0.846	SYNONYMOUS_CODING Spn42De	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2774522	2R_2774522_SNP [dm3] 2R_6887017_SNP [dm6]	C	T	7.619e^-4	0.846	NON_SYNONYMOUS_CODING Spn42De	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11657250	3L_11657250_SNP [dm3] 3L_11664150_SNP [dm6]	C	A	7.635e^-4	0.846	INTRON CG32085
X	18993305	X_18993305_SNP [dm3] X_19099272_SNP [dm6]	A	G	7.676e^-4	0.846	INTERGENIC
2R	9067986	2R_9067986_SNP [dm3] 2R_13180481_SNP [dm6]	A	T	7.714e^-4	0.846	INTRON CG17724 & 2 others
3R	19357501	3R_19357501_SNP [dm3] 3R_23531779_SNP [dm6]	G	A	7.812e^-4	0.846	UPSTREAM CG10175 INTERGENIC
3L	3044233	3L_3044233_SNP [dm3] 3L_3044233_SNP [dm6]	G	C	7.814e^-4	0.846	UTR_3_PRIME scramb2 DOWNSTREAM Jafrac2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	20733171	3R_20733171_INS [dm3] 3R_24907449_INS [dm6]	C	CCCAGCAGC	7.832e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2478045	3L_2478045_SNP [dm3] 3L_2478045_SNP [dm6]	G	A	7.916e^-4	0.846	SYNONYMOUS_CODING Cyp4d20 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9542580	3L_9542580_INS [dm3] 3L_9549480_INS [dm6]	C	CC	7.916e^-4	0.846	INTRON CG42673
3L	9576810	3L_9576810_SNP [dm3] 3L_9583710_SNP [dm6]	C	A	7.916e^-4	0.846	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19750521	3R_19750521_SNP [dm3] 3R_23924799_SNP [dm6]	T	C	7.916e^-4	0.846	SYNONYMOUS_CODING Ndc1 DOWNSTREAM CG31141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	3445231	3R_3445231_SNP [dm3] 3R_7619509_SNP [dm6]	C	G	7.916e^-4	0.846	INTRON CG34127
3R	3445234	3R_3445234_SNP [dm3] 3R_7619512_SNP [dm6]	C	G	7.916e^-4	0.846	INTRON CG34127
3R	4710640	3R_4710640_SNP [dm3] 3R_8884918_SNP [dm6]	T	C	7.916e^-4	0.846	INTRON pyd
3R	19838977	3R_19838977_SNP [dm3] 3R_24013255_SNP [dm6]	A	C	7.931e^-4	0.846	INTRON KrT95D
3R	25803417	3R_25803417_SNP [dm3] 3R_29977695_SNP [dm6]	G	A	7.931e^-4	0.846	INTERGENIC
3R	3335508	3R_3335508_SNP [dm3] 3R_7509786_SNP [dm6]	G	T	7.931e^-4	0.846	UTR_3_PRIME alpha-Est8	TF binding site BDTNP1_TFBS_sna
2L	9934460	2L_9934460_SNP [dm3] 2L_9934460_SNP [dm6]	C	T	7.949e^-4	0.846	DOWNSTREAM CG31712 INTERGENIC
2L	8368662	2L_8368662_SNP [dm3] 2L_8368662_SNP [dm6]	T	C	7.962e^-4	0.846	SYNONYMOUS_CODING Pp2A-29B	TF binding site mE1_TFBS_cad
2L	8368668	2L_8368668_SNP [dm3] 2L_8368668_SNP [dm6]	T	C	7.962e^-4	0.846	SYNONYMOUS_CODING Pp2A-29B	TF binding site mE1_TFBS_cad
2L	8368718	2L_8368718_SNP [dm3] 2L_8368718_SNP [dm6]	G	T	7.962e^-4	0.846	INTRON Pp2A-29B	TF binding site mE1_TFBS_cad
2L	8368723	2L_8368723_SNP [dm3] 2L_8368723_SNP [dm6]	G	A	7.962e^-4	0.846	INTRON Pp2A-29B	TF binding site mE1_TFBS_cad
X	4189003	X_4189003_SNP [dm3] X_4294970_SNP [dm6]	C	A	7.964e^-4	0.846	INTERGENIC
3L	10015504	3L_10015504_SNP [dm3] 3L_10022404_SNP [dm6]	G	A	7.973e^-4	0.846	INTRON dpr6
2L	14443734	2L_14443734_INS [dm3] 2L_14443734_INS [dm6]	C	CT	7.981e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14444400	2L_14444400_SNP [dm3] 2L_14444400_SNP [dm6]	G	A	7.981e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
3L	678672	3L_678672_SNP [dm3] 3L_678672_SNP [dm6]	G	C	8.032e^-4	0.846	SYNONYMOUS_CODING CG17129	TF binding site mE1_TFBS_sens
3L	678675	3L_678675_SNP [dm3] 3L_678675_SNP [dm6]	T	A	8.032e^-4	0.846	NON_SYNONYMOUS_CODING CG17129	TF binding site mE1_TFBS_sens
3L	18381573	3L_18381573_SNP [dm3] 3L_18388473_SNP [dm6]	T	G	8.046e^-4	0.846	INTERGENIC
3L	3295978	3L_3295978_SNP [dm3] 3L_3295978_SNP [dm6]	C	G	8.115e^-4	0.846	INTRON CG12009	TF binding site mE1_TFBS_cad
3L	3295987	3L_3295987_SNP [dm3] 3L_3295987_SNP [dm6]	G	A	8.115e^-4	0.846	INTRON CG12009	TF binding site mE1_TFBS_cad
X	13824614	X_13824614_SNP [dm3] X_13930581_SNP [dm6]	G	A	8.115e^-4	0.846	INTRON mamo
2L	6233126	2L_6233126_SNP [dm3] 2L_6233126_SNP [dm6]	C	T	8.116e^-4	0.846	DOWNSTREAM CR44823 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7784733	2L_7784733_SNP [dm3] 2L_7784733_SNP [dm6]	G	A	8.168e^-4	0.846	SYNONYMOUS_CODING CG7154	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7784777	2L_7784777_SNP [dm3] 2L_7784777_SNP [dm6]	T	C	8.168e^-4	0.846	NON_SYNONYMOUS_CODING CG7154	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	15733432	3L_15733432_SNP [dm3] 3L_15740332_SNP [dm6]	G	A	8.199e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	12176995	2L_12176995_DEL [dm3] 2L_12176995_DEL [dm6]	ATA	A	8.222e^-4	0.846	INTRON aret & 1 other
2L	16540092	2L_16540092_SNP [dm3] 2L_16540092_SNP [dm6]	C	T	8.222e^-4	0.846	INTERGENIC
2R	18889406	2R_18889406_DEL [dm3] 2R_23001883_DEL [dm6]	TG	T	8.231e^-4	0.846	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	18889409	2R_18889409_SNP [dm3] 2R_23001886_SNP [dm6]	T	G	8.231e^-4	0.846	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	18890610	2R_18890610_SNP [dm3] 2R_23003087_SNP [dm6]	G	A	8.231e^-4	0.846	INTRON twi	TF binding site BDTNP1_TFBS_dl
2R	7472128	2R_7472128_SNP [dm3] 2R_11584623_SNP [dm6]	C	T	8.231e^-4	0.846	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13349280	3L_13349280_SNP [dm3] 3L_13356180_SNP [dm6]	T	A	8.231e^-4	0.846	UPSTREAM Nplp2 INTERGENIC
3L	15733431	3L_15733431_SNP [dm3] 3L_15740331_SNP [dm6]	A	G	8.241e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	2633824	2L_2633824_SNP [dm3] 2L_2633824_SNP [dm6]	C	T	8.323e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10075787	3L_10075787_SNP [dm3] 3L_10082687_SNP [dm6]	T	A	8.326e^-4	0.846	INTRON dpr6
3L	10323036	3L_10323036_SNP [dm3] 3L_10329936_SNP [dm6]	G	T	8.353e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Kr
X	2993422	X_2993422_SNP [dm3] X_3099389_SNP [dm6]	A	T	8.379e^-4	0.846	UPSTREAM kirre INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8671267	2L_8671267_SNP [dm3] 2L_8671267_SNP [dm6]	C	T	8.401e^-4	0.846	UTR_3_PRIME Sema-1a
2L	11010472	2L_11010472_SNP [dm3] 2L_11010472_SNP [dm6]	C	T	8.409e^-4	0.846	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	14443663	2L_14443663_SNP [dm3] 2L_14443663_SNP [dm6]	A	T	8.415e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17470246	2L_17470246_INS [dm3] 2L_17470246_INS [dm6]	T	TT	8.433e^-4	0.846	INTRON BicD
2R	8393453	2R_8393453_DEL [dm3] 2R_12505948_DEL [dm6]	AA	A	8.434e^-4	0.846	INTRON fdl
2R	8393480	2R_8393480_SNP [dm3] 2R_12505975_SNP [dm6]	T	C	8.434e^-4	0.846	INTRON fdl
2R	8393502	2R_8393502_SNP [dm3] 2R_12505997_SNP [dm6]	G	T	8.434e^-4	0.846	INTRON fdl
3L	9574136	3L_9574136_DEL [dm3] 3L_9581036_DEL [dm6]	AA	A	8.462e^-4	0.846	INTRON CG42673
3L	8673571	3L_8673571_SNP [dm3] 3L_8680471_SNP [dm6]	T	C	8.468e^-4	0.846	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	45120	2L_45120_SNP [dm3] 2L_45120_SNP [dm6]	T	A	8.469e^-4	0.846	INTRON Cda5	TF binding site mE1_TFBS_HSA
3L	18551570	3L_18551570_SNP [dm3] 3L_18558470_SNP [dm6]	G	C	8.469e^-4	0.846	INTERGENIC
2L	3370456	2L_3370456_SNP [dm3] 2L_3370456_SNP [dm6]	T	A	8.506e^-4	0.846	INTRON CG34394
2R	12027055	2R_12027055_SNP [dm3] 2R_16139550_SNP [dm6]	G	A	8.506e^-4	0.846	INTRON Got1
2R	12860370	2R_12860370_SNP [dm3] 2R_16972865_SNP [dm6]	T	A	8.506e^-4	0.846	INTERGENIC
2R	13367499	2R_13367499_SNP [dm3] 2R_17479994_SNP [dm6]	C	G	8.506e^-4	0.846	SYNONYMOUS_CODING veil UTR_3_PRIME CG43110	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	6451758	2R_6451758_SNP [dm3] 2R_10564253_SNP [dm6]	G	A	8.506e^-4	0.846	INTRON psq	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6458745	2R_6458745_SNP [dm3] 2R_10571240_SNP [dm6]	T	C	8.506e^-4	0.846	INTRON psq	TF binding site mE1_TFBS_HSA
2R	6458747	2R_6458747_SNP [dm3] 2R_10571242_SNP [dm6]	C	T	8.506e^-4	0.846	INTRON psq	TF binding site mE1_TFBS_HSA
3L	11239799	3L_11239799_SNP [dm3] 3L_11246699_SNP [dm6]	G	A	8.506e^-4	0.846	UPSTREAM CR44713 DOWNSTREAM CR44714 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11239811	3L_11239811_SNP [dm3] 3L_11246711_SNP [dm6]	T	C	8.506e^-4	0.846	UPSTREAM CR44713 DOWNSTREAM CR44714 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11241784	3L_11241784_SNP [dm3] 3L_11248684_SNP [dm6]	C	A	8.506e^-4	0.846	UPSTREAM CR44715 EXON CR44717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11241793	3L_11241793_SNP [dm3] 3L_11248693_SNP [dm6]	T	C	8.506e^-4	0.846	UPSTREAM CR44715 EXON CR44717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11699269	3L_11699269_SNP [dm3] 3L_11706169_SNP [dm6]	G	T	8.506e^-4	0.846	INTRON CG11658
3L	11699295	3L_11699295_SNP [dm3] 3L_11706195_SNP [dm6]	A	C	8.506e^-4	0.846	INTRON CG11658
3L	11699306	3L_11699306_SNP [dm3] 3L_11706206_SNP [dm6]	C	T	8.506e^-4	0.846	INTRON CG11658
3L	1524235	3L_1524235_SNP [dm3] 3L_1524235_SNP [dm6]	A	C	8.506e^-4	0.846	SYNONYMOUS_CODING CG12090 DOWNSTREAM Psa
3L	9640280	3L_9640280_SNP [dm3] 3L_9647180_SNP [dm6]	G	A	8.506e^-4	0.846	INTRON fry & 1 other
X	19439770	X_19439770_SNP [dm3] X_19545737_SNP [dm6]	A	G	8.506e^-4	0.846	UTR_5_PRIME CG32532	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	2278762	X_2278762_SNP [dm3] X_2384729_SNP [dm6]	A	T	8.506e^-4	0.846	INTRON PsGEF	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	4236958	X_4236958_SNP [dm3] X_4342925_SNP [dm6]	C	T	8.506e^-4	0.846	INTRON norpA
2L	9916267	2L_9916267_SNP [dm3] 2L_9916267_SNP [dm6]	G	C	8.507e^-4	0.846	SYNONYMOUS_CODING yip2 DOWNSTREAM CG5885
2L	4887101	2L_4887101_SNP [dm3] 2L_4887101_SNP [dm6]	A	G	8.528e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_Ubx
X	4942837	X_4942837_INS [dm3] X_5048804_INS [dm6]	A	AAT	8.528e^-4	0.846	UTR_5_PRIME ovo INTRON CR44833	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	16540052	2L_16540052_SNP [dm3] 2L_16540052_SNP [dm6]	T	C	8.530e^-4	0.846	INTERGENIC
2R	18027412	2R_18027412_SNP [dm3] 2R_22139907_SNP [dm6]	T	A	8.535e^-4	0.846	UPSTREAM gom DOWNSTREAM CG11269 INTRON a
3L	9862039	3L_9862039_SNP [dm3] 3L_9868939_SNP [dm6]	T	C	8.535e^-4	0.846	SPLICE_SITE_REGION CG8108 INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9862047	3L_9862047_SNP [dm3] 3L_9868947_SNP [dm6]	T	G	8.535e^-4	0.846	INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9862051	3L_9862051_SNP [dm3] 3L_9868951_SNP [dm6]	T	A	8.535e^-4	0.846	INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9862058	3L_9862058_SNP [dm3] 3L_9868958_SNP [dm6]	T	C	8.535e^-4	0.846	INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9862075	3L_9862075_SNP [dm3] 3L_9868975_SNP [dm6]	C	A	8.535e^-4	0.846	INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26279796	3R_26279796_SNP [dm3] 3R_30454074_SNP [dm6]	A	G	8.535e^-4	0.846	UPSTREAM aralar1 INTRON aralar1
3L	16330569	3L_16330569_SNP [dm3] 3L_16337469_SNP [dm6]	G	T	8.578e^-4	0.846	INTERGENIC
2L	16453303	2L_16453303_SNP [dm3] 2L_16453303_SNP [dm6]	A	C	8.589e^-4	0.846	UTR_3_PRIME Idgf3 DOWNSTREAM Idgf3	regulatory region REDfly_CRMs
2L	1200320	2L_1200320_SNP [dm3] 2L_1200320_SNP [dm6]	C	T	8.618e^-4	0.846	SYNONYMOUS_CODING CG43349 UPSTREAM CG5011 DOWNSTREAM CG43348
X	7532788	X_7532788_SNP [dm3] X_7638755_SNP [dm6]	T	A	8.623e^-4	0.846	INTRON ct
2R	2587148	2R_2587148_DEL [dm3] 2R_6699643_DEL [dm6]	CAACTCAACTTTTAAATGAA...	T	8.634e^-4	0.846	DOWNSTREAM CG3409 & 2 others INTERGENIC
3L	11532947	3L_11532947_SNP [dm3] 3L_11539847_SNP [dm6]	A	G	8.636e^-4	0.846	INTRON Mob2
3L	6746005	3L_6746005_SNP [dm3] 3L_6752905_SNP [dm6]	G	T	8.639e^-4	0.846	UPSTREAM CG8549 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
2R	12581485	2R_12581485_SNP [dm3] 2R_16693980_SNP [dm6]	T	G	8.646e^-4	0.846	DOWNSTREAM CG5210 INTRON CG30463
2R	13737233	2R_13737233_DEL [dm3] 2R_17849728_DEL [dm6]	CC	C	8.646e^-4	0.846	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	13738206	2R_13738206_SNP [dm3] 2R_17850701_SNP [dm6]	T	A	8.646e^-4	0.846	UPSTREAM olf186-F INTRON olf186-F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18639107	2R_18639107_SNP [dm3] 2R_22751602_SNP [dm6]	G	T	8.646e^-4	0.846	INTRON CG42260
2R	6450571	2R_6450571_SNP [dm3] 2R_10563066_SNP [dm6]	T	A	8.646e^-4	0.846	INTRON psq	TF binding site mE1_TFBS_HSA
3R	24220048	3R_24220048_SNP [dm3] 3R_28394326_SNP [dm6]	A	G	8.672e^-4	0.846	INTERGENIC
3R	21956609	3R_21956609_SNP [dm3] 3R_26130887_SNP [dm6]	G	A	8.681e^-4	0.846	DOWNSTREAM CG31324 INTERGENIC
3L	11154248	3L_11154248_SNP [dm3] 3L_11161148_SNP [dm6]	T	A	8.733e^-4	0.846	INTRON CG32082
3L	11306882	3L_11306882_SNP [dm3] 3L_11313782_SNP [dm6]	G	A	8.733e^-4	0.846	DOWNSTREAM CG7573 INTERGENIC
3L	11306951	3L_11306951_SNP [dm3] 3L_11313851_SNP [dm6]	G	T	8.733e^-4	0.846	DOWNSTREAM CG7573 INTERGENIC
3L	11529379	3L_11529379_SNP [dm3] 3L_11536279_SNP [dm6]	G	A	8.733e^-4	0.846	INTRON Mob2	TF binding site mE1_TFBS_HSA
3L	11529389	3L_11529389_SNP [dm3] 3L_11536289_SNP [dm6]	A	T	8.733e^-4	0.846	INTRON Mob2	TF binding site mE1_TFBS_HSA
3L	11529408	3L_11529408_SNP [dm3] 3L_11536308_SNP [dm6]	C	A	8.733e^-4	0.846	INTRON Mob2	TF binding site mE1_TFBS_HSA
3L	11529409	3L_11529409_SNP [dm3] 3L_11536309_SNP [dm6]	G	C	8.733e^-4	0.846	INTRON Mob2	TF binding site mE1_TFBS_HSA
3L	11529416	3L_11529416_SNP [dm3] 3L_11536316_SNP [dm6]	A	T	8.733e^-4	0.846	INTRON Mob2	TF binding site mE1_TFBS_HSA
3L	11529418	3L_11529418_SNP [dm3] 3L_11536318_SNP [dm6]	A	G	8.733e^-4	0.846	INTRON Mob2	TF binding site mE1_TFBS_HSA
3L	11529419	3L_11529419_SNP [dm3] 3L_11536319_SNP [dm6]	T	A	8.733e^-4	0.846	INTRON Mob2	TF binding site mE1_TFBS_HSA
3L	11529431	3L_11529431_SNP [dm3] 3L_11536331_SNP [dm6]	A	G	8.733e^-4	0.846	INTRON Mob2	TF binding site mE1_TFBS_HSA
3L	11529438	3L_11529438_SNP [dm3] 3L_11536338_SNP [dm6]	G	A	8.733e^-4	0.846	INTRON Mob2	TF binding site mE1_TFBS_HSA
3L	11529443	3L_11529443_INS [dm3] 3L_11536343_INS [dm6]	C	CATTC	8.733e^-4	0.846	INTRON Mob2	TF binding site mE1_TFBS_HSA
3L	11529459	3L_11529459_SNP [dm3] 3L_11536359_SNP [dm6]	A	T	8.733e^-4	0.846	INTRON Mob2	TF binding site mE1_TFBS_HSA
3L	12611730	3L_12611730_SNP [dm3] 3L_12618630_SNP [dm6]	T	C	8.733e^-4	0.846	SYNONYMOUS_CODING caup
3L	13257082	3L_13257082_SNP [dm3] 3L_13263982_SNP [dm6]	A	T	8.733e^-4	0.846	INTRON caps	enhancer mE1_CBP_Enhancers
3L	13976535	3L_13976535_SNP [dm3] 3L_13983435_SNP [dm6]	C	A	8.733e^-4	0.846	SPLICE_SITE_REGION CG17364 INTRON CG17364
3L	14117586	3L_14117586_SNP [dm3] 3L_14124486_SNP [dm6]	C	T	8.733e^-4	0.846	INTRON Sox21b
3L	7179876	3L_7179876_SNP [dm3] 3L_7186776_SNP [dm6]	T	G	8.733e^-4	0.846	INTRON Dscam2
3L	9763626	3L_9763626_SNP [dm3] 3L_9770526_SNP [dm6]	A	C	8.733e^-4	0.846	INTRON CG8177
3L	9800542	3L_9800542_SNP [dm3] 3L_9807442_SNP [dm6]	A	T	8.733e^-4	0.846	INTRON CG32052	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15301134	3R_15301134_SNP [dm3] 3R_19475412_SNP [dm6]	C	T	8.733e^-4	0.846	INTRON Dys	TF binding site mE1_TFBS_inv
3R	17886921	3R_17886921_SNP [dm3] 3R_22061199_SNP [dm6]	C	G	8.733e^-4	0.846	INTRON how
3R	22749492	3R_22749492_SNP [dm3] 3R_26923770_SNP [dm6]	A	G	8.733e^-4	0.846	INTRON sda
3R	3147150	3R_3147150_SNP [dm3] 3R_7321428_SNP [dm6]	C	T	8.733e^-4	0.846	INTERGENIC
3L	1031351	3L_1031351_INS [dm3] 3L_1031351_INS [dm6]	G	GT	8.744e^-4	0.846	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	1031373	3L_1031373_SNP [dm3] 3L_1031373_SNP [dm6]	G	A	8.744e^-4	0.846	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	12731283	3L_12731283_SNP [dm3] 3L_12738183_SNP [dm6]	C	T	8.744e^-4	0.846	NON_SYNONYMOUS_CODING Ptp69D
3L	12735704	3L_12735704_SNP [dm3] 3L_12742604_SNP [dm6]	A	G	8.744e^-4	0.846	UTR_5_PRIME CG32112 INTRON CG32112
3L	17891658	3L_17891658_SNP [dm3] 3L_17898558_SNP [dm6]	T	A	8.744e^-4	0.846	DOWNSTREAM Prestin INTERGENIC
X	12163204	X_12163204_SNP [dm3] X_12269171_SNP [dm6]	A	G	8.744e^-4	0.846	INTRON Ten-a
2L	17117895	2L_17117895_SNP [dm3] 2L_17117895_SNP [dm6]	T	C	8.763e^-4	0.846	INTERGENIC
2L	1200329	2L_1200329_SNP [dm3] 2L_1200329_SNP [dm6]	T	G	8.773e^-4	0.846	SYNONYMOUS_CODING CG43349 UPSTREAM CG5011 DOWNSTREAM CG43348
X	2982273	X_2982273_INS [dm3] X_3088240_INS [dm6]	T	TT	8.789e^-4	0.846	INTRON kirre	TF binding site BDTNP1_TFBS_twi
2L	14784996	2L_14784996_SNP [dm3] 2L_14784996_SNP [dm6]	A	G	8.795e^-4	0.846	UPSTREAM CG18636 INTERGENIC
3L	21204314	3L_21204314_SNP [dm3] 3L_21211214_SNP [dm6]	G	C	8.812e^-4	0.846	INTRON CG10508
3R	13637436	3R_13637436_SNP [dm3] 3R_17811714_SNP [dm6]	G	A	8.812e^-4	0.846	SPLICE_SITE_REGION tinc UTR_5_PRIME tinc UPSTREAM CG18012	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	13641757	3R_13641757_SNP [dm3] 3R_17816035_SNP [dm6]	C	A	8.812e^-4	0.846	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17882868	3R_17882868_SNP [dm3] 3R_22057146_SNP [dm6]	C	G	8.812e^-4	0.846	INTRON how
3L	7720973	3L_7720973_SNP [dm3] 3L_7727873_SNP [dm6]	T	G	8.828e^-4	0.846	UTR_3_PRIME CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA
3L	7721198	3L_7721198_SNP [dm3] 3L_7728098_SNP [dm6]	G	T	8.828e^-4	0.846	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA
3L	7721230	3L_7721230_SNP [dm3] 3L_7728130_SNP [dm6]	G	A	8.828e^-4	0.846	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA
3L	7721263	3L_7721263_SNP [dm3] 3L_7728163_SNP [dm6]	T	C	8.828e^-4	0.846	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7721452	3L_7721452_SNP [dm3] 3L_7728352_SNP [dm6]	A	G	8.828e^-4	0.846	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	7721501	3L_7721501_SNP [dm3] 3L_7728401_SNP [dm6]	T	G	8.828e^-4	0.846	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	7721688	3L_7721688_SNP [dm3] 3L_7728588_SNP [dm6]	A	G	8.828e^-4	0.846	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	7721690	3L_7721690_SNP [dm3] 3L_7728590_SNP [dm6]	T	G	8.828e^-4	0.846	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2R	17588139	2R_17588139_SNP [dm3] 2R_21700634_SNP [dm6]	T	G	8.830e^-4	0.846	UPSTREAM HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	21440008	X_21440008_SNP [dm3] X_21568981_SNP [dm6]	G	T	8.831e^-4	0.846	INTERGENIC
2R	13705538	2R_13705538_SNP [dm3] 2R_17818033_SNP [dm6]	G	A	8.869e^-4	0.846	INTRON grh	regulatory region REDfly_CRMs
3L	5670209	3L_5670209_INS [dm3] 3L_5677109_INS [dm6]	T	TTGAT	8.918e^-4	0.846	INTRON sif	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5670247	3L_5670247_SNP [dm3] 3L_5677147_SNP [dm6]	G	A	8.918e^-4	0.846	INTRON sif	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	17105222	2L_17105222_SNP [dm3] 2L_17105222_SNP [dm6]	C	G	8.935e^-4	0.846	EXON CR45448
3L	12739937	3L_12739937_SNP [dm3] 3L_12746837_SNP [dm6]	G	C	8.989e^-4	0.846	DOWNSTREAM CG32109 INTRON Klc	TF binding site mE1_TFBS_inv
3L	12739938	3L_12739938_SNP [dm3] 3L_12746838_SNP [dm6]	A	G	8.989e^-4	0.846	DOWNSTREAM CG32109 INTRON Klc	TF binding site mE1_TFBS_inv
2R	17730860	2R_17730860_SNP [dm3] 2R_21843355_SNP [dm6]	A	T	9.017e^-4	0.846	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17730936	2R_17730936_SNP [dm3] 2R_21843431_SNP [dm6]	T	A	9.017e^-4	0.846	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5911815	X_5911815_SNP [dm3] X_6017782_SNP [dm6]	A	C	9.017e^-4	0.846	INTERGENIC
3R	15031929	3R_15031929_SNP [dm3] 3R_19206207_SNP [dm6]	C	T	9.026e^-4	0.846	INTERGENIC
3L	13287834	3L_13287834_SNP [dm3] 3L_13294734_SNP [dm6]	G	A	9.049e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	16747874	3L_16747874_SNP [dm3] 3L_16754774_SNP [dm6]	G	A	9.049e^-4	0.846	UPSTREAM CG42852 INTERGENIC
3R	7654095	3R_7654095_INS [dm3] 3R_11828373_INS [dm6]	G	GG	9.052e^-4	0.846	INTRON CG6959
3L	9339783	3L_9339783_SNP [dm3] 3L_9346683_SNP [dm6]	T	C	9.095e^-4	0.846	NON_SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC INTRON PGRP-LC
X	6532902	X_6532902_SNP [dm3] X_6638869_SNP [dm6]	T	C	9.139e^-4	0.846	INTRON pigs
3L	10172453	3L_10172453_SNP [dm3] 3L_10179353_SNP [dm6]	T	G	9.143e^-4	0.846	INTRON dpr10
3L	8732647	3L_8732647_SNP [dm3] 3L_8739547_SNP [dm6]	C	A	9.143e^-4	0.846	UPSTREAM Prm INTRON Prm	TF binding site mE1_TFBS_cad
3L	8732652	3L_8732652_SNP [dm3] 3L_8739552_SNP [dm6]	G	A	9.143e^-4	0.846	UPSTREAM Prm INTRON Prm	TF binding site mE1_TFBS_cad
3L	1024598	3L_1024598_SNP [dm3] 3L_1024598_SNP [dm6]	G	T	9.162e^-4	0.846	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10454265	3L_10454265_SNP [dm3] 3L_10461165_SNP [dm6]	G	A	9.162e^-4	0.846	SYNONYMOUS_CODING Gem3
3L	10454458	3L_10454458_SNP [dm3] 3L_10461358_SNP [dm6]	C	T	9.162e^-4	0.846	SYNONYMOUS_CODING Gem3
3L	10454472	3L_10454472_SNP [dm3] 3L_10461372_SNP [dm6]	T	A	9.162e^-4	0.846	NON_SYNONYMOUS_CODING Gem3
3L	10454633	3L_10454633_SNP [dm3] 3L_10461533_SNP [dm6]	G	A	9.162e^-4	0.846	NON_SYNONYMOUS_CODING Gem3
3L	10454646	3L_10454646_SNP [dm3] 3L_10461546_SNP [dm6]	C	T	9.162e^-4	0.846	NON_SYNONYMOUS_CODING Gem3
3L	10454755	3L_10454755_SNP [dm3] 3L_10461655_SNP [dm6]	T	G	9.162e^-4	0.846	NON_SYNONYMOUS_CODING Gem3
3L	10457061	3L_10457061_SNP [dm3] 3L_10463961_SNP [dm6]	G	T	9.162e^-4	0.846	NON_SYNONYMOUS_CODING CG32061 UPSTREAM Gem3	TF binding site mE1_TFBS_bab1
3L	10457659	3L_10457659_SNP [dm3] 3L_10464559_SNP [dm6]	T	A	9.162e^-4	0.846	UTR_3_PRIME CG32061 UPSTREAM S-Lap3
3L	10458203	3L_10458203_SNP [dm3] 3L_10465103_SNP [dm6]	C	A	9.162e^-4	0.846	UPSTREAM S-Lap3 DOWNSTREAM CG32061 INTERGENIC
3L	11040287	3L_11040287_SNP [dm3] 3L_11047187_SNP [dm6]	T	C	9.162e^-4	0.846	UPSTREAM CG43693 INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11310156	3L_11310156_SNP [dm3] 3L_11317056_SNP [dm6]	C	A	9.162e^-4	0.846	DOWNSTREAM CR44361 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17688545	3L_17688545_SNP [dm3] 3L_17695445_SNP [dm6]	G	A	9.162e^-4	0.846	INTRON Ccn
3L	3054071	3L_3054071_SNP [dm3] 3L_3054071_SNP [dm6]	C	T	9.162e^-4	0.846	NON_SYNONYMOUS_CODING CG1271	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15748956	3R_15748956_SNP [dm3] 3R_19923234_SNP [dm6]	A	T	9.162e^-4	0.846	INTRON CG4462	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10700251	3L_10700251_SNP [dm3] 3L_10707151_SNP [dm6]	T	C	9.170e^-4	0.846	INTERGENIC
3R	26843676	3R_26843676_SNP [dm3] 3R_31017954_SNP [dm6]	C	A	9.216e^-4	0.846	INTERGENIC
2R	15844029	2R_15844029_SNP [dm3] 2R_19956524_SNP [dm6]	T	C	9.225e^-4	0.846	NON_SYNONYMOUS_CODING CG44623
2R	15844066	2R_15844066_SNP [dm3] 2R_19956561_SNP [dm6]	T	C	9.225e^-4	0.846	INTRON CG44623
2R	15844090	2R_15844090_SNP [dm3] 2R_19956585_SNP [dm6]	T	A	9.225e^-4	0.846	SPLICE_SITE_REGION CG44623 INTRON CG44623
2R	15844091	2R_15844091_SNP [dm3] 2R_19956586_SNP [dm6]	T	A	9.225e^-4	0.846	SPLICE_SITE_REGION CG44623 INTRON CG44623
2R	15844139	2R_15844139_SNP [dm3] 2R_19956634_SNP [dm6]	C	T	9.225e^-4	0.846	SYNONYMOUS_CODING CG44623
2R	16107027	2R_16107027_SNP [dm3] 2R_20219522_SNP [dm6]	G	A	9.225e^-4	0.846	INTERGENIC
3L	7752339	3L_7752339_SNP [dm3] 3L_7759239_SNP [dm6]	A	T	9.225e^-4	0.846	DOWNSTREAM CG32373 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
X	17147707	X_17147707_SNP [dm3] X_17253674_SNP [dm6]	A	T	9.225e^-4	0.846	INTRON f	TF binding site BDTNP1_TFBS_twi
X	17147725	X_17147725_SNP [dm3] X_17253692_SNP [dm6]	A	T	9.225e^-4	0.846	INTRON f	TF binding site BDTNP1_TFBS_twi
X	17147726	X_17147726_SNP [dm3] X_17253693_SNP [dm6]	T	C	9.225e^-4	0.846	INTRON f	TF binding site BDTNP1_TFBS_twi
X	17147746	X_17147746_SNP [dm3] X_17253713_SNP [dm6]	T	A	9.225e^-4	0.846	INTRON f	TF binding site BDTNP1_TFBS_twi
X	17147758	X_17147758_SNP [dm3] X_17253725_SNP [dm6]	C	T	9.225e^-4	0.846	INTRON f	TF binding site BDTNP1_TFBS_twi
X	6994626	X_6994626_SNP [dm3] X_7100593_SNP [dm6]	T	C	9.225e^-4	0.846	INTRON CG4615	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1153740	2L_1153740_SNP [dm3] 2L_1153740_SNP [dm6]	A	G	9.235e^-4	0.846	INTRON capt
X	12511038	X_12511038_INS [dm3] X_12617005_INS [dm6]	A	AA	9.238e^-4	0.846	INTRON CG11085	TF binding site BDTNP1_TFBS_dl
2L	17100910	2L_17100910_SNP [dm3] 2L_17100910_SNP [dm6]	G	A	9.246e^-4	0.846	INTERGENIC
2R	10621090	2R_10621090_SNP [dm3] 2R_14733585_SNP [dm6]	T	C	9.246e^-4	0.846	INTERGENIC
2R	1677890	2R_1677890_SNP [dm3] 2R_5790385_SNP [dm6]	T	C	9.246e^-4	0.846	INTERGENIC
3R	2553069	3R_2553069_SNP [dm3] 3R_6727347_SNP [dm6]	A	C	9.246e^-4	0.846	INTRON pb	regulatory region FlyBase REDfly_CRMs
2R	8399185	2R_8399185_DEL [dm3] 2R_12511680_DEL [dm6]	GGCTCTATCA	G	9.272e^-4	0.846	UTR_3_PRIME achi	TF binding site BDTNP1_TFBS_dl
2R	8402778	2R_8402778_SNP [dm3] 2R_12515273_SNP [dm6]	C	T	9.272e^-4	0.846	UPSTREAM CG13151 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx
2R	8403164	2R_8403164_SNP [dm3] 2R_12515659_SNP [dm6]	G	A	9.272e^-4	0.846	NON_SYNONYMOUS_CODING CG13151 UPSTREAM achi	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8404009	2R_8404009_SNP [dm3] 2R_12516504_SNP [dm6]	A	G	9.272e^-4	0.846	NON_SYNONYMOUS_CODING CG13151 DOWNSTREAM CG8818	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8404114	2R_8404114_SNP [dm3] 2R_12516609_SNP [dm6]	G	A	9.272e^-4	0.846	NON_SYNONYMOUS_CODING CG13151 DOWNSTREAM CG8818	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	8404155	2R_8404155_SNP [dm3] 2R_12516650_SNP [dm6]	G	C	9.272e^-4	0.846	NON_SYNONYMOUS_CODING CG13151 DOWNSTREAM CG8818	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8404607	2R_8404607_SNP [dm3] 2R_12517102_SNP [dm6]	C	T	9.272e^-4	0.846	SYNONYMOUS_CODING CG13151 DOWNSTREAM CG8818	TF binding site mE1_TFBS_cad
2R	8406473	2R_8406473_SNP [dm3] 2R_12518968_SNP [dm6]	A	C	9.272e^-4	0.846	UPSTREAM CG8569 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA
2R	8406478	2R_8406478_SNP [dm3] 2R_12518973_SNP [dm6]	A	G	9.272e^-4	0.846	UPSTREAM CG8569 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA
2R	8409164	2R_8409164_SNP [dm3] 2R_12521659_SNP [dm6]	G	A	9.272e^-4	0.846	UPSTREAM CG33632 DOWNSTREAM CG8569 INTERGENIC	TF binding site mE1_TFBS_run
2R	8409478	2R_8409478_SNP [dm3] 2R_12521973_SNP [dm6]	T	C	9.272e^-4	0.846	UPSTREAM CG33632 DOWNSTREAM CG8569 INTERGENIC
X	4587899	X_4587899_SNP [dm3] X_4693866_SNP [dm6]	G	C	9.272e^-4	0.846	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
X	4588007	X_4588007_SNP [dm3] X_4693974_SNP [dm6]	A	G	9.272e^-4	0.846	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
X	6448362	X_6448362_SNP [dm3] X_6554329_SNP [dm6]	G	A	9.272e^-4	0.846	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	13926378	2L_13926378_SNP [dm3] 2L_13926378_SNP [dm6]	A	T	9.290e^-4	0.846	INTRON Ance-3
2L	13926393	2L_13926393_INS [dm3] 2L_13926393_INS [dm6]	A	AA	9.290e^-4	0.846	INTRON Ance-3
2L	13926397	2L_13926397_SNP [dm3] 2L_13926397_SNP [dm6]	C	A	9.290e^-4	0.846	INTRON Ance-3
2R	3401541	2R_3401541_INS [dm3] 2R_7514036_INS [dm6]	C	CCAAAGACCCTAGAATAATA...	9.308e^-4	0.846	UTR_3_PRIME CG1603 DOWNSTREAM CG1603
X	17146013	X_17146013_SNP [dm3] X_17251980_SNP [dm6]	A	C	9.333e^-4	0.846	UPSTREAM f INTRON f	TF binding site BDTNP1_TFBS_dl
2R	16488246	2R_16488246_SNP [dm3] 2R_20600741_SNP [dm6]	G	C	9.348e^-4	0.846	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	727460	3L_727460_SNP [dm3] 3L_727460_SNP [dm6]	A	C	9.348e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_sens
2L	16553759	2L_16553759_SNP [dm3] 2L_16553759_SNP [dm6]	A	T	9.357e^-4	0.846	INTRON CG42389
2L	10723895	2L_10723895_SNP [dm3] 2L_10723895_SNP [dm6]	C	T	9.373e^-4	0.846	UPSTREAM CG6431 INTERGENIC
2L	3381878	2L_3381878_SNP [dm3] 2L_3381878_SNP [dm6]	T	C	9.373e^-4	0.846	INTERGENIC
3R	25966321	3R_25966321_SNP [dm3] 3R_30140599_SNP [dm6]	A	G	9.375e^-4	0.846	INTRON AdoR	TF binding site mE1_TFBS_chinmo
2L	10748441	2L_10748441_SNP [dm3] 2L_10748441_SNP [dm6]	T	G	9.432e^-4	0.846	INTRON CG17124	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10332160	2R_10332160_SNP [dm3] 2R_14444655_SNP [dm6]	A	T	9.438e^-4	0.846	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	10332697	2R_10332697_SNP [dm3] 2R_14445192_SNP [dm6]	A	G	9.438e^-4	0.846	INTRON Oaz
2L	2521279	2L_2521279_SNP [dm3] 2L_2521279_SNP [dm6]	A	G	9.501e^-4	0.846	INTERGENIC
2L	508795	2L_508795_SNP [dm3] 2L_508795_SNP [dm6]	A	T	9.501e^-4	0.846	INTRON ush
2L	9464765	2L_9464765_SNP [dm3] 2L_9464765_SNP [dm6]	C	T	9.544e^-4	0.846	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	11385770	2R_11385770_SNP [dm3] 2R_15498265_SNP [dm6]	A	T	9.592e^-4	0.846	INTERGENIC
3L	948830	3L_948830_SNP [dm3] 3L_948830_SNP [dm6]	C	A	9.601e^-4	0.846	INTRON Glut1
2R	14336951	2R_14336951_SNP [dm3] 2R_18449446_SNP [dm6]	C	G	9.616e^-4	0.846	DOWNSTREAM CG5189 & 1 other INTRON Prp19	TF binding site mE1_TFBS_cad
2R	9739701	2R_9739701_SNP [dm3] 2R_13852196_SNP [dm6]	A	C	9.616e^-4	0.846	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG6543
2R	9739717	2R_9739717_SNP [dm3] 2R_13852212_SNP [dm6]	A	G	9.616e^-4	0.846	SYNONYMOUS_CODING CG30485 DOWNSTREAM CG6543
X	2875522	X_2875522_SNP [dm3] X_2981489_SNP [dm6]	A	G	9.621e^-4	0.846	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	13829881	3L_13829881_SNP [dm3] 3L_13836781_SNP [dm6]	T	G	9.624e^-4	0.846	UPSTREAM CG43184 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18378190	3L_18378190_SNP [dm3] 3L_18385090_SNP [dm6]	A	T	9.624e^-4	0.846	INTERGENIC
X	4236963	X_4236963_SNP [dm3] X_4342930_SNP [dm6]	T	A	9.624e^-4	0.846	INTRON norpA
3R	2238822	3R_2238822_SNP [dm3] 3R_6413100_SNP [dm6]	G	T	9.691e^-4	0.846	INTRON gpp
3R	2239090	3R_2239090_SNP [dm3] 3R_6413368_SNP [dm6]	C	T	9.691e^-4	0.846	INTRON gpp
2L	12401804	2L_12401804_SNP [dm3] 2L_12401804_SNP [dm6]	C	A	9.694e^-4	0.846	UTR_3_PRIME Pkd2
2R	14706034	2R_14706034_SNP [dm3] 2R_18818529_SNP [dm6]	T	G	9.723e^-4	0.846	UPSTREAM Phb2 INTERGENIC
X	5251934	X_5251934_SNP [dm3] X_5357901_SNP [dm6]	C	T	9.835e^-4	0.846	UPSTREAM SK INTRON SK
3L	3418356	3L_3418356_SNP [dm3] 3L_3418356_SNP [dm6]	A	T	9.839e^-4	0.846	UPSTREAM sty INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7812958	2R_7812958_SNP [dm3] 2R_11925453_SNP [dm6]	G	A	9.894e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_run
2R	10230230	2R_10230230_SNP [dm3] 2R_14342725_SNP [dm6]	C	T	9.962e^-4	0.846	INTRON Shroom	TF binding site mE1_TFBS_HSA
X	13274420	X_13274420_SNP [dm3] X_13380387_SNP [dm6]	G	A	9.962e^-4	0.846	UTR_3_PRIME Rbp1-like DOWNSTREAM Rbp1-like & 1 other
X	16523330	X_16523330_SNP [dm3] X_16629297_SNP [dm6]	C	T	9.962e^-4	0.846	SYNONYMOUS_CODING Rok	TF binding site mE1_TFBS_chinmo
2R	12670705	2R_12670705_SNP [dm3] 2R_16783200_SNP [dm6]	A	T	9.963e^-4	0.846	UPSTREAM CG5522 DOWNSTREAM resilin INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

RepOutput_Day08 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results