DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.002e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	4.7782	0.0917

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1061 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	11111178	X_11111178_SNP [dm3] X_11217145_SNP [dm6]	T	C	2.957e^-6	0.917	INTERGENIC
2R	8911925	2R_8911925_SNP [dm3] 2R_13024420_SNP [dm6]	A	G	4.192e^-6	0.917	INTERGENIC
3L	18492202	3L_18492202_SNP [dm3] 3L_18499102_SNP [dm6]	G	A	4.192e^-6	0.917	INTRON AstC-R2
2R	5427749	2R_5427749_SNP [dm3] 2R_9540244_SNP [dm6]	G	A	5.124e^-6	0.917	UTR_3_PRIME brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14527380	3L_14527380_SNP [dm3] 3L_14534280_SNP [dm6]	G	C	6.915e^-6	0.917	INTRON bbg	TF binding site mE1_TFBS_Trl
2R	17436228	2R_17436228_SNP [dm3] 2R_21548723_SNP [dm6]	C	A	1.092e^-5	0.917	INTRON Egfr	TF binding site BDTNP1_TFBS_dl
2R	11844909	2R_11844909_SNP [dm3] 2R_15957404_SNP [dm6]	A	G	1.237e^-5	0.917	UPSTREAM Strn-Mlck DOWNSTREAM CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	11844926	2R_11844926_SNP [dm3] 2R_15957421_SNP [dm6]	T	C	1.237e^-5	0.917	UPSTREAM Strn-Mlck DOWNSTREAM CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	5444062	2R_5444062_SNP [dm3] 2R_9556557_SNP [dm6]	T	G	1.237e^-5	0.917	INTERGENIC
X	11111129	X_11111129_SNP [dm3] X_11217096_SNP [dm6]	T	C	1.343e^-5	0.917	INTERGENIC
2L	4794246	2L_4794246_SNP [dm3] 2L_4794246_SNP [dm6]	A	C	1.360e^-5	0.917	UPSTREAM CG3294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9620785	3L_9620785_SNP [dm3] 3L_9627685_SNP [dm6]	A	G	1.538e^-5	0.917	SPLICE_SITE_REGION Or67b UPSTREAM CG8336 DOWNSTREAM CG3335 INTRON Or67b
2L	21916487	2L_21916487_SNP [dm3] 2L_21916487_SNP [dm6]	T	A	1.624e^-5	0.917	NON_SYNONYMOUS_CODING CG11634
3L	4978489	3L_4978489_SNP [dm3] 3L_4978489_SNP [dm6]	A	G	1.716e^-5	0.917	INTRON Con
2R	11415155	2R_11415155_SNP [dm3] 2R_15527650_SNP [dm6]	C	T	1.945e^-5	0.917	SYNONYMOUS_CODING Khc-73	TF binding site BDTNP1_TFBS_dl
2R	11416422	2R_11416422_SNP [dm3] 2R_15528917_SNP [dm6]	T	C	1.945e^-5	0.917	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8911929	2R_8911929_SNP [dm3] 2R_13024424_SNP [dm6]	C	A	2.228e^-5	0.917	INTERGENIC
3R	15327713	3R_15327713_SNP [dm3] 3R_19501991_SNP [dm6]	G	T	2.228e^-5	0.917	INTRON Dys
3R	18328932	3R_18328932_SNP [dm3] 3R_22503210_SNP [dm6]	T	A	2.228e^-5	0.917	INTRON Octbeta1R
3R	25265193	3R_25265193_SNP [dm3] 3R_29439471_SNP [dm6]	A	T	2.228e^-5	0.917	INTRON Ptp99A
2L	7189211	2L_7189211_SNP [dm3] 2L_7189211_SNP [dm6]	G	C	2.324e^-5	0.917	INTRON CG4496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	14268854	2R_14268854_SNP [dm3] 2R_18381349_SNP [dm6]	T	C	2.343e^-5	0.917	DOWNSTREAM CG43202 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9444999	2R_9444999_SNP [dm3] 2R_13557494_SNP [dm6]	T	C	2.404e^-5	0.917	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	19973851	2R_19973851_SNP [dm3] 2R_24086328_SNP [dm6]	G	C	2.736e^-5	0.917	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	5427731	2R_5427731_SNP [dm3] 2R_9540226_SNP [dm6]	G	T	3.030e^-5	0.917	UTR_3_PRIME brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7956155	3L_7956155_SNP [dm3] 3L_7963055_SNP [dm6]	C	A	3.226e^-5	0.917	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8913789	3L_8913789_SNP [dm3] 3L_8920689_SNP [dm6]	A	T	3.243e^-5	0.917	INTRON Tsp66E
3R	18704146	3R_18704146_SNP [dm3] 3R_22878424_SNP [dm6]	T	G	3.301e^-5	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4978443	3L_4978443_SNP [dm3] 3L_4978443_SNP [dm6]	T	G	3.341e^-5	0.917	INTRON Con
2L	6566375	2L_6566375_SNP [dm3] 2L_6566375_SNP [dm6]	G	C	3.513e^-5	0.917	UPSTREAM CG13766 INTERGENIC
2L	6140895	2L_6140895_SNP [dm3] 2L_6140895_SNP [dm6]	C	T	3.568e^-5	0.917	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6140901	2L_6140901_SNP [dm3] 2L_6140901_SNP [dm6]	G	T	3.568e^-5	0.917	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20823341	3R_20823341_SNP [dm3] 3R_24997619_SNP [dm6]	G	A	3.730e^-5	0.917	INTRON tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20391131	X_20391131_SNP [dm3] X_20520104_SNP [dm6]	T	G	3.730e^-5	0.917	INTRON Tak1
3L	3297604	3L_3297604_SNP [dm3] 3L_3297604_SNP [dm6]	C	T	3.912e^-5	0.917	SYNONYMOUS_CODING CG12009
2R	17599721	2R_17599721_SNP [dm3] 2R_21712216_SNP [dm6]	T	G	4.062e^-5	0.917	UPSTREAM CG30403 INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3783026	3L_3783026_SNP [dm3] 3L_3783026_SNP [dm6]	C	A	4.242e^-5	0.917	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	22848917	3R_22848917_SNP [dm3] 3R_27023195_SNP [dm6]	C	T	4.317e^-5	0.917	UTR_5_PRIME CG6277 INTRON RYa-R
3R	22848918	3R_22848918_SNP [dm3] 3R_27023196_SNP [dm6]	G	A	4.317e^-5	0.917	START_GAINED CG6277 UTR_5_PRIME CG6277 INTRON RYa-R
2R	11653566	2R_11653566_SNP [dm3] 2R_15766061_SNP [dm6]	T	G	4.449e^-5	0.917	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9832299	X_9832299_SNP [dm3] X_9938266_SNP [dm6]	G	T	4.540e^-5	0.917	INTERGENIC
X	9832310	X_9832310_SNP [dm3] X_9938277_SNP [dm6]	G	C	4.540e^-5	0.917	INTERGENIC
X	9832314	X_9832314_SNP [dm3] X_9938281_SNP [dm6]	G	T	4.540e^-5	0.917	INTERGENIC
2R	11423956	2R_11423956_SNP [dm3] 2R_15536451_SNP [dm6]	C	A	4.895e^-5	0.917	INTRON CG30471
X	14829020	X_14829020_SNP [dm3] X_14934987_SNP [dm6]	G	C	5.003e^-5	0.917	SYNONYMOUS_CODING pdgy	TF binding site mE1_TFBS_sens
2L	6567218	2L_6567218_SNP [dm3] 2L_6567218_SNP [dm6]	T	C	5.006e^-5	0.917	INTERGENIC
3R	22890521	3R_22890521_DEL [dm3] 3R_27064799_DEL [dm6]	AA	C	5.215e^-5	0.917	UPSTREAM Nep5 & 1 other DOWNSTREAM spz INTERGENIC
3R	9839233	3R_9839233_SNP [dm3] 3R_14013511_SNP [dm6]	A	C	5.334e^-5	0.917	INTRON rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4135877	2R_4135877_SNP [dm3] 2R_8248372_SNP [dm6]	A	C	5.395e^-5	0.917	DOWNSTREAM CG44439 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	20340275	X_20340275_SNP [dm3] X_20469248_SNP [dm6]	C	T	5.465e^-5	0.917	NON_SYNONYMOUS_CODING GstT3 DOWNSTREAM RhoGAP19D	TF binding site mE1_TFBS_HSA
2R	11418437	2R_11418437_SNP [dm3] 2R_15530932_SNP [dm6]	C	G	5.928e^-5	0.917	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	770261	2L_770261_SNP [dm3] 2L_770261_SNP [dm6]	C	T	5.993e^-5	0.917	INTERGENIC
3L	5820932	3L_5820932_SNP [dm3] 3L_5827832_SNP [dm6]	A	T	6.004e^-5	0.917	INTRON vn
2R	7403149	2R_7403149_SNP [dm3] 2R_11515644_SNP [dm6]	C	T	6.233e^-5	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13941266	3L_13941266_SNP [dm3] 3L_13948166_SNP [dm6]	G	T	6.233e^-5	0.917	INTRON CG32137
3L	8124936	3L_8124936_SNP [dm3] 3L_8131836_SNP [dm6]	T	C	6.233e^-5	0.917	SYNONYMOUS_CODING CG7504 DOWNSTREAM CdsA
3L	8124987	3L_8124987_SNP [dm3] 3L_8131887_SNP [dm6]	T	A	6.233e^-5	0.917	NON_SYNONYMOUS_CODING CG7504 DOWNSTREAM CdsA
3R	26538524	3R_26538524_SNP [dm3] 3R_30712802_SNP [dm6]	C	T	6.425e^-5	0.917	INTERGENIC
3L	2431992	3L_2431992_SNP [dm3] 3L_2431992_SNP [dm6]	G	A	6.458e^-5	0.917	INTRON CG45186
3L	2619676	3L_2619676_SNP [dm3] 3L_2619676_SNP [dm6]	C	T	6.458e^-5	0.917	INTRON Pxn
3L	3453265	3L_3453265_SNP [dm3] 3L_3453265_SNP [dm6]	G	T	6.458e^-5	0.917	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17812630	3R_17812630_SNP [dm3] 3R_21986908_SNP [dm6]	T	C	6.633e^-5	0.917	INTRON Eip93F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4292804	2L_4292804_INS [dm3] 2L_4292804_INS [dm6]	A	AA	6.753e^-5	0.917	INTRON tutl
2R	6228370	2R_6228370_SNP [dm3] 2R_10340865_SNP [dm6]	C	T	6.769e^-5	0.917	INTRON CG42732
2L	6558215	2L_6558215_SNP [dm3] 2L_6558215_SNP [dm6]	A	G	6.936e^-5	0.917	UPSTREAM Osm6 INTRON CoVb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	22894759	3R_22894759_SNP [dm3] 3R_27069037_SNP [dm6]	T	C	7.086e^-5	0.917	INTRON spz
3L	16257560	3L_16257560_SNP [dm3] 3L_16264460_SNP [dm6]	G	T	7.169e^-5	0.917	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2R	17025724	2R_17025724_SNP [dm3] 2R_21138219_SNP [dm6]	G	C	7.171e^-5	0.917	SPLICE_SITE_REGION Magi INTRON Magi	TF binding site mE1_TFBS_chinmo
3L	3080579	3L_3080579_DEL [dm3] 3L_3080579_DEL [dm6]	ACGCGT	A	7.172e^-5	0.917	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	3080587	3L_3080587_SNP [dm3] 3L_3080587_SNP [dm6]	G	T	7.172e^-5	0.917	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	4978723	3L_4978723_SNP [dm3] 3L_4978723_SNP [dm6]	A	C	7.172e^-5	0.917	INTRON Con
3R	22727094	3R_22727094_SNP [dm3] 3R_26901372_SNP [dm6]	G	C	7.288e^-5	0.917	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	25321020	3R_25321020_SNP [dm3] 3R_29495298_SNP [dm6]	G	T	7.518e^-5	0.917	INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	18234409	2L_18234409_SNP [dm3] 2L_18234409_SNP [dm6]	C	A	7.743e^-5	0.917	INTRON CG42750
2L	7071872	2L_7071872_INS [dm3] 2L_7071872_INS [dm6]	G	GG	7.882e^-5	0.917	INTRON Pvf2
2R	10795398	2R_10795398_SNP [dm3] 2R_14907893_SNP [dm6]	A	G	8.207e^-5	0.917	UTR_5_PRIME CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5954596	2L_5954596_SNP [dm3] 2L_5954596_SNP [dm6]	G	T	8.348e^-5	0.917	NON_SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
2R	5648610	2R_5648610_SNP [dm3] 2R_9761105_SNP [dm6]	T	A	8.628e^-5	0.917	INTRON trpl
2R	5648613	2R_5648613_SNP [dm3] 2R_9761108_SNP [dm6]	A	T	8.628e^-5	0.917	INTRON trpl
2L	8496071	2L_8496071_SNP [dm3] 2L_8496071_SNP [dm6]	A	G	8.764e^-5	0.917	SYNONYMOUS_CODING Bace INTRON Dh31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8497308	2L_8497308_SNP [dm3] 2L_8497308_SNP [dm6]	C	T	8.764e^-5	0.917	INTRON Dh31
2L	8497327	2L_8497327_DEL [dm3] 2L_8497327_DEL [dm6]	AA	A	8.764e^-5	0.917	INTRON Dh31
2L	3750983	2L_3750983_SNP [dm3] 2L_3750983_SNP [dm6]	C	G	9.494e^-5	0.917	INTRON CG10019
2L	19936799	2L_19936799_SNP [dm3] 2L_19936799_SNP [dm6]	C	G	9.645e^-5	0.917	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11419011	2R_11419011_SNP [dm3] 2R_15531506_SNP [dm6]	A	G	9.718e^-5	0.917	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9832281	X_9832281_SNP [dm3] X_9938248_SNP [dm6]	G	A	9.795e^-5	0.917	INTERGENIC
2R	14939481	2R_14939481_SNP [dm3] 2R_19051976_SNP [dm6]	C	T	9.865e^-5	0.917	INTERGENIC
X	6388208	X_6388208_SNP [dm3] X_6494175_SNP [dm6]	G	A	9.865e^-5	0.917	INTRON CG42340
2R	5427803	2R_5427803_DEL [dm3] 2R_9540298_DEL [dm6]	TTATG	T	1.005e^-4	0.917	UTR_3_PRIME brp	TF binding site BDTNP1_TFBS_dl
3L	10520198	3L_10520198_SNP [dm3] 3L_10527098_SNP [dm6]	G	A	1.007e^-4	0.917	INTRON A2bp1
2L	18234340	2L_18234340_SNP [dm3] 2L_18234340_SNP [dm6]	T	C	1.009e^-4	0.917	INTRON CG42750
2L	6559264	2L_6559264_INS [dm3] 2L_6559264_INS [dm6]	A	AT	1.024e^-4	0.917	UTR_3_PRIME CoVb UPSTREAM CG11043 DOWNSTREAM CG9596 & 1 other
2L	770067	2L_770067_INS [dm3] 2L_770067_INS [dm6]	T	TTACTAT	1.024e^-4	0.917	INTERGENIC
2L	770213	2L_770213_SNP [dm3] 2L_770213_SNP [dm6]	A	G	1.024e^-4	0.917	INTERGENIC
2L	770255	2L_770255_SNP [dm3] 2L_770255_SNP [dm6]	T	C	1.024e^-4	0.917	INTERGENIC
2L	770287	2L_770287_SNP [dm3] 2L_770287_SNP [dm6]	G	A	1.024e^-4	0.917	INTERGENIC
2R	18813149	2R_18813149_SNP [dm3] 2R_22925626_SNP [dm6]	G	A	1.026e^-4	0.917	UPSTREAM Nup214 & 1 other INTRON CG42678	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18813162	2R_18813162_SNP [dm3] 2R_22925639_SNP [dm6]	G	A	1.026e^-4	0.917	UPSTREAM Nup214 & 1 other INTRON CG42678	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18813170	2R_18813170_SNP [dm3] 2R_22925647_SNP [dm6]	C	A	1.026e^-4	0.917	UPSTREAM Nup214 & 1 other INTRON CG42678	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14993536	3L_14993536_INS [dm3] 3L_15000436_INS [dm6]	A	AAAA	1.026e^-4	0.917	UPSTREAM mRpL39 DOWNSTREAM Reck INTRON Prosbeta2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
X	2923226	X_2923226_SNP [dm3] X_3029193_SNP [dm6]	G	T	1.026e^-4	0.917	INTRON kirre
2L	10322880	2L_10322880_SNP [dm3] 2L_10322880_SNP [dm6]	T	C	1.045e^-4	0.917	UPSTREAM CG4995 INTRON CG5381 & 1 other
3L	2835654	3L_2835654_SNP [dm3] 3L_2835654_SNP [dm6]	T	A	1.049e^-4	0.917	INTRON CG43444
3L	4978279	3L_4978279_SNP [dm3] 3L_4978279_SNP [dm6]	C	T	1.051e^-4	0.917	INTRON Con
2R	11845329	2R_11845329_SNP [dm3] 2R_15957824_SNP [dm6]	C	T	1.052e^-4	0.917	SYNONYMOUS_CODING Strn-Mlck UPSTREAM Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18234375	2L_18234375_SNP [dm3] 2L_18234375_SNP [dm6]	T	G	1.058e^-4	0.917	INTRON CG42750
3R	11424771	3R_11424771_SNP [dm3] 3R_15599049_SNP [dm6]	A	T	1.060e^-4	0.917	INTERGENIC
3R	18683132	3R_18683132_SNP [dm3] 3R_22857410_SNP [dm6]	G	A	1.062e^-4	0.917	INTERGENIC
2R	13907150	2R_13907150_SNP [dm3] 2R_18019645_SNP [dm6]	A	C	1.107e^-4	0.917	SYNONYMOUS_CODING CG5084 UPSTREAM CG10910	TF binding site mE1_TFBS_cad
3L	6644230	3L_6644230_SNP [dm3] 3L_6651130_SNP [dm6]	G	C	1.114e^-4	0.917	INTERGENIC
2L	9845176	2L_9845176_SNP [dm3] 2L_9845176_SNP [dm6]	A	G	1.136e^-4	0.917	INTRON nAChRalpha6
2L	10322860	2L_10322860_SNP [dm3] 2L_10322860_SNP [dm6]	A	G	1.139e^-4	0.917	UPSTREAM CG4995 INTRON CG5381 & 1 other
3R	19710863	3R_19710863_SNP [dm3] 3R_23885141_SNP [dm6]	G	A	1.249e^-4	0.917	INTRON Pli	TF binding site mE1_TFBS_GATAe
3L	15673321	3L_15673321_SNP [dm3] 3L_15680221_SNP [dm6]	A	C	1.256e^-4	0.917	NON_SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA
3L	15673342	3L_15673342_SNP [dm3] 3L_15680242_SNP [dm6]	C	T	1.256e^-4	0.917	NON_SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15673346	3L_15673346_SNP [dm3] 3L_15680246_SNP [dm6]	C	G	1.256e^-4	0.917	NON_SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15673355	3L_15673355_SNP [dm3] 3L_15680255_SNP [dm6]	G	A	1.256e^-4	0.917	NON_SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2431623	3L_2431623_SNP [dm3] 3L_2431623_SNP [dm6]	C	T	1.260e^-4	0.917	INTRON CG45186
3R	22746590	3R_22746590_SNP [dm3] 3R_26920868_SNP [dm6]	T	G	1.260e^-4	0.917	INTRON sda
3R	11400179	3R_11400179_SNP [dm3] 3R_15574457_SNP [dm6]	C	T	1.278e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	23129030	3R_23129030_SNP [dm3] 3R_27303308_SNP [dm6]	A	T	1.283e^-4	0.917	SYNONYMOUS_CODING CG3339
3R	9695040	3R_9695040_SNP [dm3] 3R_13869318_SNP [dm6]	A	T	1.283e^-4	0.917	INTRON E5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	921448	3R_921448_SNP [dm3] 3R_5095726_SNP [dm6]	A	G	1.289e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	6290630	2R_6290630_SNP [dm3] 2R_10403125_SNP [dm6]	A	G	1.290e^-4	0.917	INTRON CG42732
3R	7073079	3R_7073079_SNP [dm3] 3R_11247357_SNP [dm6]	G	A	1.302e^-4	0.917	DOWNSTREAM CR43283 & 1 other INTERGENIC
3R	12331869	3R_12331869_SNP [dm3] 3R_16506147_SNP [dm6]	G	A	1.315e^-4	0.917	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6233279	2R_6233279_SNP [dm3] 2R_10345774_SNP [dm6]	C	T	1.321e^-4	0.917	INTRON CG42732
2R	6233283	2R_6233283_SNP [dm3] 2R_10345778_SNP [dm6]	C	A	1.321e^-4	0.917	INTRON CG42732
3L	580741	3L_580741_SNP [dm3] 3L_580741_SNP [dm6]	G	C	1.327e^-4	0.917	UTR_3_PRIME hipk UPSTREAM Ppm1
3R	11963755	3R_11963755_SNP [dm3] 3R_16138033_SNP [dm6]	G	C	1.327e^-4	0.917	INTRON Sb	TF binding site mE1_TFBS_inv
3R	11963785	3R_11963785_SNP [dm3] 3R_16138063_SNP [dm6]	T	C	1.327e^-4	0.917	INTRON Sb	TF binding site mE1_TFBS_inv
3R	11963825	3R_11963825_INS [dm3] 3R_16138103_INS [dm6]	G	GAATG	1.327e^-4	0.917	INTRON Sb	TF binding site mE1_TFBS_inv
X	19974406	X_19974406_SNP [dm3] X_20080373_SNP [dm6]	G	T	1.335e^-4	0.917	INTERGENIC
3L	18578065	3L_18578065_SNP [dm3] 3L_18584965_SNP [dm6]	A	G	1.337e^-4	0.917	DOWNSTREAM CR45435 INTERGENIC
X	12380878	X_12380878_SNP [dm3] X_12486845_SNP [dm6]	C	A	1.359e^-4	0.917	UPSTREAM Cpr11A INTERGENIC
2R	19905647	2R_19905647_SNP [dm3] 2R_24018124_SNP [dm6]	A	T	1.363e^-4	0.917	UPSTREAM CG4324 INTRON CG3121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	16988075	2R_16988075_SNP [dm3] 2R_21100570_SNP [dm6]	A	G	1.377e^-4	0.917	SYNONYMOUS_CODING CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
3L	6926309	3L_6926309_SNP [dm3] 3L_6933209_SNP [dm6]	C	T	1.381e^-4	0.917	SYNONYMOUS_CODING CG14820
2L	5860166	2L_5860166_SNP [dm3] 2L_5860166_SNP [dm6]	C	T	1.383e^-4	0.917	UTR_3_PRIME rau	TF binding site mE1_TFBS_cad
3L	16190193	3L_16190193_SNP [dm3] 3L_16197093_SNP [dm6]	T	A	1.414e^-4	0.917	UPSTREAM CG33687 EXON CR45437
2L	13918761	2L_13918761_SNP [dm3] 2L_13918761_SNP [dm6]	C	T	1.441e^-4	0.917	INTRON Ance-3
3R	9657409	3R_9657409_SNP [dm3] 3R_13831687_SNP [dm6]	C	T	1.472e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9076302	3R_9076302_SNP [dm3] 3R_13250580_SNP [dm6]	A	T	1.477e^-4	0.917	INTRON Ace
2L	6259241	2L_6259241_SNP [dm3] 2L_6259241_SNP [dm6]	G	A	1.477e^-4	0.917	INTRON Ddr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12050524	3L_12050524_SNP [dm3] 3L_12057424_SNP [dm6]	T	A	1.477e^-4	0.917	UPSTREAM rols INTRON rols	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6558219	2L_6558219_SNP [dm3] 2L_6558219_SNP [dm6]	T	A	1.482e^-4	0.917	UPSTREAM Osm6 INTRON CoVb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	14694385	X_14694385_SNP [dm3] X_14800352_SNP [dm6]	C	T	1.488e^-4	0.917	SYNONYMOUS_CODING rut
3L	9141603	3L_9141603_SNP [dm3] 3L_9148503_SNP [dm6]	G	T	1.500e^-4	0.917	UTR_3_PRIME Rdl DOWNSTREAM Rdl
3L	3616586	3L_3616586_SNP [dm3] 3L_3616586_SNP [dm6]	A	G	1.501e^-4	0.917	UTR_3_PRIME CG10357	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	14148331	2R_14148331_SNP [dm3] 2R_18260826_SNP [dm6]	A	C	1.506e^-4	0.917	INTERGENIC
2R	14148260	2R_14148260_SNP [dm3] 2R_18260755_SNP [dm6]	G	A	1.533e^-4	0.917	INTERGENIC
2R	14148351	2R_14148351_SNP [dm3] 2R_18260846_SNP [dm6]	C	G	1.533e^-4	0.917	INTERGENIC
3L	6812342	3L_6812342_SNP [dm3] 3L_6819242_SNP [dm6]	C	G	1.533e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	6812351	3L_6812351_SNP [dm3] 3L_6819251_SNP [dm6]	T	G	1.533e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	6812354	3L_6812354_SNP [dm3] 3L_6819254_SNP [dm6]	G	T	1.533e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	6812388	3L_6812388_SNP [dm3] 3L_6819288_SNP [dm6]	A	T	1.533e^-4	0.917	INTERGENIC
3L	6812452	3L_6812452_INS [dm3] 3L_6819352_INS [dm6]	A	AA	1.533e^-4	0.917	INTERGENIC
3L	6812457	3L_6812457_SNP [dm3] 3L_6819357_SNP [dm6]	G	T	1.533e^-4	0.917	INTERGENIC
3L	6812472	3L_6812472_SNP [dm3] 3L_6819372_SNP [dm6]	C	T	1.533e^-4	0.917	INTERGENIC
2L	2687919	2L_2687919_DEL [dm3] 2L_2687919_DEL [dm6]	GG	G	1.555e^-4	0.917	INTRON CG31690
3R	9223321	3R_9223321_SNP [dm3] 3R_13397599_SNP [dm6]	G	A	1.561e^-4	0.917	UPSTREAM CG14377 & 1 other DOWNSTREAM CG9796 INTERGENIC
3L	13251642	3L_13251642_SNP [dm3] 3L_13258542_SNP [dm6]	G	C	1.576e^-4	0.917	INTRON caps
2R	11423960	2R_11423960_SNP [dm3] 2R_15536455_SNP [dm6]	T	A	1.596e^-4	0.917	INTRON CG30471
3R	24631767	3R_24631767_INS [dm3] 3R_28806045_INS [dm6]	T	TAATGTTTTT	1.598e^-4	0.917	UPSTREAM CheB98a INTERGENIC
2L	18230382	2L_18230382_SNP [dm3] 2L_18230382_SNP [dm6]	A	G	1.609e^-4	0.917	INTRON CG42750	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10841019	3L_10841019_SNP [dm3] 3L_10847919_SNP [dm6]	T	A	1.619e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9518803	2R_9518803_SNP [dm3] 2R_13631298_SNP [dm6]	T	C	1.638e^-4	0.917	INTRON fas
2R	18362735	2R_18362735_SNP [dm3] 2R_22475230_SNP [dm6]	G	T	1.676e^-4	0.917	SYNONYMOUS_CODING CG45062	TF binding site mE1_TFBS_chinmo
3L	10888831	3L_10888831_SNP [dm3] 3L_10895731_SNP [dm6]	C	T	1.676e^-4	0.917	UTR_3_PRIME Aps UPSTREAM CR45171
X	14694436	X_14694436_SNP [dm3] X_14800403_SNP [dm6]	G	A	1.676e^-4	0.917	SYNONYMOUS_CODING rut
3L	4976908	3L_4976908_SNP [dm3] 3L_4976908_SNP [dm6]	G	C	1.684e^-4	0.917	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9445019	2R_9445019_SNP [dm3] 2R_13557514_SNP [dm6]	C	T	1.694e^-4	0.917	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13073632	3R_13073632_DEL [dm3] 3R_17247910_DEL [dm6]	TGCTGCC	T	1.701e^-4	0.917	UTR_5_PRIME beat-IIb UPSTREAM beat-IIb
3R	3625791	3R_3625791_SNP [dm3] 3R_7800069_SNP [dm6]	A	G	1.702e^-4	0.917	INTRON CG3014
2L	6559501	2L_6559501_SNP [dm3] 2L_6559501_SNP [dm6]	C	T	1.707e^-4	0.917	UTR_5_PRIME CG11043 UTR_3_PRIME CG9596 DOWNSTREAM CG9596 & 1 other	TF binding site mE1_TFBS_cad
2L	2687943	2L_2687943_SNP [dm3] 2L_2687943_SNP [dm6]	G	T	1.736e^-4	0.917	INTRON CG31690
2R	11416270	2R_11416270_SNP [dm3] 2R_15528765_SNP [dm6]	G	T	1.754e^-4	0.917	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13331095	3L_13331095_SNP [dm3] 3L_13337995_SNP [dm6]	G	A	1.756e^-4	0.917	INTERGENIC
3L	14334561	3L_14334561_SNP [dm3] 3L_14341461_SNP [dm6]	T	A	1.762e^-4	0.917	INTRON fz	TF binding site BDTNP1_TFBS_dl
3L	5658856	3L_5658856_SNP [dm3] 3L_5665756_SNP [dm6]	T	C	1.762e^-4	0.917	UTR_5_PRIME sif INTRON sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8805340	3L_8805340_SNP [dm3] 3L_8812240_SNP [dm6]	T	A	1.762e^-4	0.917	DOWNSTREAM CG13309 INTERGENIC
2L	18121706	2L_18121706_SNP [dm3] 2L_18121706_SNP [dm6]	C	A	1.773e^-4	0.917	UPSTREAM CG5758 INTRON CG5758
2R	13901947	2R_13901947_SNP [dm3] 2R_18014442_SNP [dm6]	C	T	1.817e^-4	0.917	INTERGENIC
2R	18438083	2R_18438083_SNP [dm3] 2R_22550578_SNP [dm6]	T	C	1.817e^-4	0.917	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad
2R	18438116	2R_18438116_SNP [dm3] 2R_22550611_SNP [dm6]	C	A	1.817e^-4	0.917	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad
3L	6812461	3L_6812461_SNP [dm3] 3L_6819361_SNP [dm6]	A	G	1.821e^-4	0.917	INTERGENIC
2L	18224841	2L_18224841_SNP [dm3] 2L_18224841_SNP [dm6]	A	G	1.836e^-4	0.917	INTRON CG42750
2R	11845054	2R_11845054_SNP [dm3] 2R_15957549_SNP [dm6]	A	C	1.865e^-4	0.917	UPSTREAM Strn-Mlck DOWNSTREAM CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	12375429	2R_12375429_SNP [dm3] 2R_16487924_SNP [dm6]	A	C	1.865e^-4	0.917	UPSTREAM CG33459 DOWNSTREAM CG33458 INTERGENIC
2L	10322866	2L_10322866_SNP [dm3] 2L_10322866_SNP [dm6]	A	C	1.869e^-4	0.917	UPSTREAM CG4995 INTRON CG5381 & 1 other
3R	663683	3R_663683_SNP [dm3] 3R_4837961_SNP [dm6]	T	A	1.873e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	11418276	2R_11418276_SNP [dm3] 2R_15530771_SNP [dm6]	T	A	1.905e^-4	0.917	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad
2R	11418298	2R_11418298_SNP [dm3] 2R_15530793_SNP [dm6]	C	A	1.905e^-4	0.917	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11418431	2R_11418431_SNP [dm3] 2R_15530926_SNP [dm6]	G	T	1.905e^-4	0.917	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11418492	2R_11418492_SNP [dm3] 2R_15530987_SNP [dm6]	T	C	1.905e^-4	0.917	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
2L	814212	2L_814212_SNP [dm3] 2L_814212_SNP [dm6]	T	G	1.920e^-4	0.917	DOWNSTREAM Dbp21E2 INTRON Saf6
2R	12026446	2R_12026446_SNP [dm3] 2R_16138941_SNP [dm6]	G	A	1.930e^-4	0.917	DOWNSTREAM spin INTRON Got1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11691832	X_11691832_INS [dm3] X_11797799_INS [dm6]	G	GA	1.983e^-4	0.917	UTR_3_PRIME CkIIbeta DOWNSTREAM CkIIbeta INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12967868	3R_12967868_SNP [dm3] 3R_17142146_SNP [dm6]	G	A	1.989e^-4	0.917	SYNONYMOUS_CODING TwdlW DOWNSTREAM CG5265	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7168682	2L_7168682_SNP [dm3] 2L_7168682_SNP [dm6]	A	C	2.008e^-4	0.917	INTERGENIC
3R	22727238	3R_22727238_SNP [dm3] 3R_26901516_SNP [dm6]	A	G	2.035e^-4	0.917	INTRON T48	regulatory region REDfly_CRMs
3L	15266588	3L_15266588_SNP [dm3] 3L_15273488_SNP [dm6]	T	A	2.039e^-4	0.917	INTERGENIC
X	12513579	X_12513579_INS [dm3] X_12619546_INS [dm6]	A	AAATTTAACCTAT...	2.041e^-4	0.917	INTRON CG11085
X	12513583	X_12513583_SNP [dm3] X_12619550_SNP [dm6]	G	T	2.041e^-4	0.917	INTRON CG11085
X	12513590	X_12513590_MNP [dm3] X_12619557_MNP [dm6]	GCC	TTT	2.041e^-4	0.917	INTRON CG11085
X	12513594	X_12513594_SNP [dm3] X_12619561_SNP [dm6]	A	T	2.041e^-4	0.917	INTRON CG11085
2R	11421330	2R_11421330_SNP [dm3] 2R_15533825_SNP [dm6]	A	T	2.045e^-4	0.917	INTRON CG30471
2R	11421341	2R_11421341_SNP [dm3] 2R_15533836_SNP [dm6]	A	G	2.045e^-4	0.917	INTRON CG30471
2L	9818895	2L_9818895_SNP [dm3] 2L_9818895_SNP [dm6]	A	G	2.056e^-4	0.917	INTRON nAChRalpha6
3L	3080558	3L_3080558_SNP [dm3] 3L_3080558_SNP [dm6]	A	G	2.125e^-4	0.917	INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	5923065	2L_5923065_SNP [dm3] 2L_5923065_SNP [dm6]	A	G	2.135e^-4	0.917	UTR_3_PRIME CG9016 DOWNSTREAM bchs
2L	18214843	2L_18214843_SNP [dm3] 2L_18214843_SNP [dm6]	T	G	2.156e^-4	0.917	INTRON CG42750
2R	17434622	2R_17434622_SNP [dm3] 2R_21547117_SNP [dm6]	T	G	2.175e^-4	0.917	START_GAINED Egfr UTR_5_PRIME Egfr INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	2901821	2R_2901821_SNP [dm3] 2R_7014316_SNP [dm6]	T	C	2.175e^-4	0.917	INTRON Tsp42Ee	TF binding site BDTNP1_TFBS_twi
X	11656084	X_11656084_SNP [dm3] X_11762051_SNP [dm6]	G	T	2.194e^-4	0.917	INTRON m
3R	18081941	3R_18081941_SNP [dm3] 3R_22256219_SNP [dm6]	G	A	2.201e^-4	0.917	INTRON SKIP	TF binding site mE1_TFBS_chinmo
2L	8793045	2L_8793045_SNP [dm3] 2L_8793045_SNP [dm6]	T	G	2.214e^-4	0.917	INTERGENIC
3L	11659384	3L_11659384_SNP [dm3] 3L_11666284_SNP [dm6]	T	G	2.221e^-4	0.917	INTRON CG32085
3L	6812407	3L_6812407_SNP [dm3] 3L_6819307_SNP [dm6]	A	T	2.252e^-4	0.917	INTERGENIC
2L	6566668	2L_6566668_SNP [dm3] 2L_6566668_SNP [dm6]	T	C	2.289e^-4	0.917	UPSTREAM CG13766 INTERGENIC
2L	3007061	2L_3007061_SNP [dm3] 2L_3007061_SNP [dm6]	A	G	2.314e^-4	0.917	INTRON CG17265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	3427607	2L_3427607_SNP [dm3] 2L_3427607_SNP [dm6]	T	C	2.314e^-4	0.917	UPSTREAM pgant2 INTERGENIC
2R	7765870	2R_7765870_SNP [dm3] 2R_11878365_SNP [dm6]	T	G	2.332e^-4	0.917	NON_SYNONYMOUS_CODING CG13185
3R	21339789	3R_21339789_SNP [dm3] 3R_25514067_SNP [dm6]	C	T	2.332e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6009400	3R_6009400_DEL [dm3] 3R_10183678_DEL [dm6]	CCCAAAAAGCCCTGGGCTTC...	C	2.332e^-4	0.917	INTRON CG12814
3R	6009461	3R_6009461_DEL [dm3] 3R_10183739_DEL [dm6]	GG	G	2.332e^-4	0.917	INTRON CG12814
3R	9839847	3R_9839847_SNP [dm3] 3R_14014125_SNP [dm6]	C	G	2.332e^-4	0.917	INTRON rdx	TF binding site BDTNP1_TFBS_dl
2L	6747667	2L_6747667_SNP [dm3] 2L_6747667_SNP [dm6]	G	A	2.337e^-4	0.917	SYNONYMOUS_CODING CG44271 INTRON CG11221
2L	6747691	2L_6747691_SNP [dm3] 2L_6747691_SNP [dm6]	G	C	2.337e^-4	0.917	NON_SYNONYMOUS_CODING CG44271 INTRON CG11221
2L	8638175	2L_8638175_SNP [dm3] 2L_8638175_SNP [dm6]	A	G	2.337e^-4	0.917	INTRON Sema-1a
3R	11963731	3R_11963731_SNP [dm3] 3R_16138009_SNP [dm6]	A	G	2.359e^-4	0.917	INTRON Sb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8342537	3L_8342537_SNP [dm3] 3L_8349437_SNP [dm6]	G	A	2.385e^-4	0.917	SYNONYMOUS_CODING GAPcenA	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	6290640	2R_6290640_SNP [dm3] 2R_10403135_SNP [dm6]	G	T	2.387e^-4	0.917	INTRON CG42732
3R	27456958	3R_27456958_SNP [dm3] 3R_31631236_SNP [dm6]	C	T	2.432e^-4	0.917	INTRON kek6
2R	12254748	2R_12254748_SNP [dm3] 2R_16367243_SNP [dm6]	G	A	2.482e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14868271	3L_14868271_SNP [dm3] 3L_14875171_SNP [dm6]	A	T	2.482e^-4	0.917	INTRON CG17839
2L	4794140	2L_4794140_SNP [dm3] 2L_4794140_SNP [dm6]	G	A	2.490e^-4	0.917	UPSTREAM CG3294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16234748	2L_16234748_SNP [dm3] 2L_16234748_SNP [dm6]	C	T	2.491e^-4	0.917	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15345796	2L_15345796_SNP [dm3] 2L_15345796_SNP [dm6]	T	C	2.493e^-4	0.917	INTERGENIC
2L	18222437	2L_18222437_SNP [dm3] 2L_18222437_SNP [dm6]	C	A	2.496e^-4	0.917	INTRON CG42750
2R	6616113	2R_6616113_SNP [dm3] 2R_10728608_SNP [dm6]	T	G	2.497e^-4	0.917	UTR_5_PRIME Rab3 DOWNSTREAM CG12338
2R	6616133	2R_6616133_SNP [dm3] 2R_10728628_SNP [dm6]	A	G	2.497e^-4	0.917	UTR_5_PRIME Rab3 DOWNSTREAM CG12338
3L	16477540	3L_16477540_SNP [dm3] 3L_16484440_SNP [dm6]	T	C	2.497e^-4	0.917	UPSTREAM aos INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	16262998	X_16262998_SNP [dm3] X_16368965_SNP [dm6]	C	T	2.497e^-4	0.917	UTR_3_PRIME nonA DOWNSTREAM nonA INTRON nonA
X	7682654	X_7682654_SNP [dm3] X_7788621_SNP [dm6]	T	A	2.497e^-4	0.917	INTERGENIC
X	7682666	X_7682666_SNP [dm3] X_7788633_SNP [dm6]	G	T	2.497e^-4	0.917	INTERGENIC
2L	18139788	2L_18139788_SNP [dm3] 2L_18139788_SNP [dm6]	C	T	2.543e^-4	0.917	SYNONYMOUS_CODING Socs36E UTR_3_PRIME Socs36E	TF binding site mE1_TFBS_cad
2L	6336532	2L_6336532_SNP [dm3] 2L_6336532_SNP [dm6]	A	G	2.551e^-4	0.917	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7063426	2L_7063426_SNP [dm3] 2L_7063426_SNP [dm6]	A	T	2.564e^-4	0.917	UTR_3_PRIME Mnn1 UPSTREAM Sem1 DOWNSTREAM Mnn1	TF binding site mE1_TFBS_cnc
3L	2651543	3L_2651543_SNP [dm3] 3L_2651543_SNP [dm6]	C	T	2.578e^-4	0.917	SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
3L	2651573	3L_2651573_SNP [dm3] 3L_2651573_SNP [dm6]	C	G	2.578e^-4	0.917	NON_SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
3L	2651650	3L_2651650_DEL [dm3] 3L_2651650_DEL [dm6]	CTC	C	2.578e^-4	0.917	UPSTREAM Snup & 1 other INTRON Aats-pro
3L	7398851	3L_7398851_SNP [dm3] 3L_7405751_SNP [dm6]	G	A	2.578e^-4	0.917	UPSTREAM pncr015:3L INTERGENIC
3L	7398970	3L_7398970_SNP [dm3] 3L_7405870_SNP [dm6]	C	T	2.578e^-4	0.917	UPSTREAM pncr015:3L INTERGENIC
3R	14788555	3R_14788555_SNP [dm3] 3R_18962833_SNP [dm6]	C	T	2.578e^-4	0.917	INTRON CG42613 & 1 other
3R	14788579	3R_14788579_SNP [dm3] 3R_18962857_SNP [dm6]	C	G	2.578e^-4	0.917	INTRON CG42613 & 1 other
X	19493229	X_19493229_SNP [dm3] X_19599196_SNP [dm6]	C	T	2.578e^-4	0.917	UTR_3_PRIME RpS10b DOWNSTREAM CG14220 & 1 other
3R	10189200	3R_10189200_SNP [dm3] 3R_14363478_SNP [dm6]	G	A	2.588e^-4	0.917	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3990901	3R_3990901_SNP [dm3] 3R_8165179_SNP [dm6]	C	G	2.588e^-4	0.917	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1611813	3L_1611813_SNP [dm3] 3L_1611813_SNP [dm6]	G	T	2.596e^-4	0.917	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10349333	2L_10349333_SNP [dm3] 2L_10349333_SNP [dm6]	A	T	2.606e^-4	0.917	INTRON CG34367
3R	24719302	3R_24719302_SNP [dm3] 3R_28893580_SNP [dm6]	A	T	2.609e^-4	0.917	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo
3R	9388985	3R_9388985_SNP [dm3] 3R_13563263_SNP [dm6]	T	A	2.609e^-4	0.917	INTERGENIC
3R	25329046	3R_25329046_INS [dm3] 3R_29503324_INS [dm6]	C	CCCGCGAGTGT...	2.614e^-4	0.917	UTR_5_PRIME Trc8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13123859	2R_13123859_SNP [dm3] 2R_17236354_SNP [dm6]	A	T	2.624e^-4	0.917	INTRON mbl
2R	13130924	2R_13130924_SNP [dm3] 2R_17243419_SNP [dm6]	C	T	2.624e^-4	0.917	INTRON mbl
2R	16499822	2R_16499822_SNP [dm3] 2R_20612317_SNP [dm6]	T	C	2.624e^-4	0.917	INTRON Hil
2R	19301073	2R_19301073_SNP [dm3] 2R_23413550_SNP [dm6]	G	C	2.624e^-4	0.917	NON_SYNONYMOUS_CODING CG9812 INTRON CG9812
3L	3521455	3L_3521455_SNP [dm3] 3L_3521455_SNP [dm6]	G	C	2.624e^-4	0.917	INTRON Eip63E
X	11353044	X_11353044_SNP [dm3] X_11459011_SNP [dm6]	A	G	2.624e^-4	0.917	UTR_3_PRIME HP5 UPSTREAM CG43155
X	18873449	X_18873449_SNP [dm3] X_18979416_SNP [dm6]	G	T	2.639e^-4	0.917	INTRON CG43759	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	19103388	3L_19103388_SNP [dm3] 3L_19110288_SNP [dm6]	T	C	2.653e^-4	0.917	SYNONYMOUS_CODING CG14082
3L	6812471	3L_6812471_SNP [dm3] 3L_6819371_SNP [dm6]	T	C	2.653e^-4	0.917	INTERGENIC
3L	5369240	3L_5369240_SNP [dm3] 3L_5376140_SNP [dm6]	G	T	2.682e^-4	0.917	INTERGENIC
2L	766916	2L_766916_SNP [dm3] 2L_766916_SNP [dm6]	C	G	2.690e^-4	0.917	INTERGENIC
3L	5992659	3L_5992659_SNP [dm3] 3L_5999559_SNP [dm6]	G	A	2.695e^-4	0.917	INTRON PVRAP
2L	2819145	2L_2819145_SNP [dm3] 2L_2819145_SNP [dm6]	A	G	2.701e^-4	0.917	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	866873	3L_866873_SNP [dm3] 3L_866873_SNP [dm6]	T	A	2.727e^-4	0.917	INTRON CG12502	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13906625	2R_13906625_SNP [dm3] 2R_18019120_SNP [dm6]	T	G	2.732e^-4	0.917	SYNONYMOUS_CODING CG5084	TF binding site mE1_TFBS_cad
2L	769842	2L_769842_SNP [dm3] 2L_769842_SNP [dm6]	T	C	2.734e^-4	0.917	INTERGENIC
2L	769871	2L_769871_SNP [dm3] 2L_769871_SNP [dm6]	T	G	2.734e^-4	0.917	INTERGENIC
2L	769872	2L_769872_SNP [dm3] 2L_769872_SNP [dm6]	T	A	2.734e^-4	0.917	INTERGENIC
2L	769876	2L_769876_SNP [dm3] 2L_769876_SNP [dm6]	T	C	2.734e^-4	0.917	INTERGENIC
2R	18353347	2R_18353347_SNP [dm3] 2R_22465842_SNP [dm6]	A	G	2.785e^-4	0.917	INTRON CG10384
2R	11418404	2R_11418404_SNP [dm3] 2R_15530899_SNP [dm6]	G	C	2.799e^-4	0.917	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	2078773	3R_2078773_SNP [dm3] 3R_6253051_SNP [dm6]	A	G	2.844e^-4	0.917	INTERGENIC
2L	859012	2L_859012_SNP [dm3] 2L_859012_SNP [dm6]	G	A	2.869e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_cad
X	21907749	X_21907749_SNP [dm3] X_22505913_SNP [dm6]	G	T	2.876e^-4	0.917	SYNONYMOUS_CODING l_1_G0196	TF binding site mE1_TFBS_chinmo
3L	21817425	3L_21817425_SNP [dm3] 3L_21824325_SNP [dm6]	C	T	2.882e^-4	0.917	UTR_3_PRIME CG7407 UPSTREAM CG7414	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12966801	3R_12966801_SNP [dm3] 3R_17141079_SNP [dm6]	C	T	2.882e^-4	0.917	UTR_3_PRIME CG5265 DOWNSTREAM TwdlW
3R	12966802	3R_12966802_SNP [dm3] 3R_17141080_SNP [dm6]	T	C	2.882e^-4	0.917	UTR_3_PRIME CG5265 DOWNSTREAM TwdlW
3R	12966805	3R_12966805_SNP [dm3] 3R_17141083_SNP [dm6]	T	A	2.882e^-4	0.917	UTR_3_PRIME CG5265 DOWNSTREAM TwdlW
3R	12966809	3R_12966809_SNP [dm3] 3R_17141087_SNP [dm6]	C	G	2.882e^-4	0.917	UTR_3_PRIME CG5265 DOWNSTREAM TwdlW
3R	12966864	3R_12966864_SNP [dm3] 3R_17141142_SNP [dm6]	T	C	2.882e^-4	0.917	UTR_3_PRIME CG5265 DOWNSTREAM TwdlW
3R	9672720	3R_9672720_SNP [dm3] 3R_13846998_SNP [dm6]	G	A	2.882e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9672981	3R_9672981_SNP [dm3] 3R_13847259_SNP [dm6]	A	G	2.882e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18221548	2L_18221548_SNP [dm3] 2L_18221548_SNP [dm6]	T	C	2.902e^-4	0.917	INTRON CG42750
2L	18234020	2L_18234020_SNP [dm3] 2L_18234020_SNP [dm6]	T	G	2.902e^-4	0.917	INTRON CG42750
3L	14048691	3L_14048691_SNP [dm3] 3L_14055591_SNP [dm6]	A	G	2.902e^-4	0.917	INTRON CG32138	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	15705268	3L_15705268_SNP [dm3] 3L_15712168_SNP [dm6]	C	A	2.902e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	9011520	2L_9011520_SNP [dm3] 2L_9011520_SNP [dm6]	A	T	2.914e^-4	0.917	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	9011522	2L_9011522_DEL [dm3] 2L_9011522_DEL [dm6]	AAA	A	2.914e^-4	0.917	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3L	9046291	3L_9046291_SNP [dm3] 3L_9053191_SNP [dm6]	C	T	2.914e^-4	0.917	INTRON Argk	TF binding site mE1_TFBS_HSA
3L	9255389	3L_9255389_SNP [dm3] 3L_9262289_SNP [dm6]	C	T	2.914e^-4	0.917	INTRON GluRIB	TF binding site BDTNP1_TFBS_twi
X	14072110	X_14072110_SNP [dm3] X_14178077_SNP [dm6]	T	A	2.914e^-4	0.917	UTR_3_PRIME CG11581 DOWNSTREAM CG11581
2R	14604381	2R_14604381_SNP [dm3] 2R_18716876_SNP [dm6]	G	A	2.931e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14604394	2R_14604394_SNP [dm3] 2R_18716889_SNP [dm6]	A	T	2.931e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6434107	X_6434107_SNP [dm3] X_6540074_SNP [dm6]	A	G	2.931e^-4	0.917	UPSTREAM CG34417 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6434109	X_6434109_SNP [dm3] X_6540076_SNP [dm6]	G	A	2.931e^-4	0.917	UPSTREAM CG34417 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6434120	X_6434120_SNP [dm3] X_6540087_SNP [dm6]	A	G	2.931e^-4	0.917	UPSTREAM CG34417 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	7905397	X_7905397_SNP [dm3] X_8011364_SNP [dm6]	A	T	2.931e^-4	0.917	INTRON Tbh
3R	19574085	3R_19574085_SNP [dm3] 3R_23748363_SNP [dm6]	T	C	2.973e^-4	0.917	SYNONYMOUS_CODING Hmgcr	TF binding site mE1_TFBS_cad
3R	9958935	3R_9958935_SNP [dm3] 3R_14133213_SNP [dm6]	A	C	2.973e^-4	0.917	INTERGENIC
2R	16567768	2R_16567768_SNP [dm3] 2R_20680263_SNP [dm6]	C	T	2.976e^-4	0.917	INTERGENIC
2L	20091029	2L_20091029_SNP [dm3] 2L_20091029_SNP [dm6]	A	G	3.000e^-4	0.917	SYNONYMOUS_CODING CG10747 UPSTREAM CG10721	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	11141369	3R_11141369_SNP [dm3] 3R_15315647_SNP [dm6]	A	G	3.000e^-4	0.917	UPSTREAM CG14866 DOWNSTREAM Tm2 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	11141372	3R_11141372_SNP [dm3] 3R_15315650_SNP [dm6]	G	A	3.000e^-4	0.917	UPSTREAM CG14866 DOWNSTREAM Tm2 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	11141374	3R_11141374_SNP [dm3] 3R_15315652_SNP [dm6]	A	G	3.000e^-4	0.917	UPSTREAM CG14866 DOWNSTREAM Tm2 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	11141410	3R_11141410_SNP [dm3] 3R_15315688_SNP [dm6]	G	C	3.000e^-4	0.917	UPSTREAM CG14866 DOWNSTREAM Tm2 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	13956042	2R_13956042_SNP [dm3] 2R_18068537_SNP [dm6]	G	A	3.045e^-4	0.917	INTRON CG34386
2L	8288524	2L_8288524_SNP [dm3] 2L_8288524_SNP [dm6]	C	T	3.059e^-4	0.917	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7147165	3L_7147165_SNP [dm3] 3L_7154065_SNP [dm6]	C	T	3.063e^-4	0.917	INTRON corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18376539	2R_18376539_SNP [dm3] 2R_22489034_SNP [dm6]	C	T	3.072e^-4	0.917	SYNONYMOUS_CODING CG4554
2R	18376551	2R_18376551_SNP [dm3] 2R_22489046_SNP [dm6]	T	G	3.072e^-4	0.917	SYNONYMOUS_CODING CG4554
2R	18376554	2R_18376554_SNP [dm3] 2R_22489049_SNP [dm6]	G	C	3.072e^-4	0.917	SYNONYMOUS_CODING CG4554
X	7924257	X_7924257_SNP [dm3] X_8030224_SNP [dm6]	A	G	3.111e^-4	0.917	INTERGENIC
3R	25022166	3R_25022166_SNP [dm3] 3R_29196444_SNP [dm6]	C	A	3.125e^-4	0.917	INTERGENIC
2L	16234623	2L_16234623_SNP [dm3] 2L_16234623_SNP [dm6]	T	A	3.128e^-4	0.917	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23211097	3R_23211097_SNP [dm3] 3R_27385375_SNP [dm6]	T	C	3.148e^-4	0.917	INTRON side
2L	9517584	2L_9517584_SNP [dm3] 2L_9517584_SNP [dm6]	T	C	3.218e^-4	0.917	SYNONYMOUS_CODING CG33298
2R	12026157	2R_12026157_INS [dm3] 2R_16138652_INS [dm6]	T	TT	3.264e^-4	0.917	UPSTREAM Got1 DOWNSTREAM spin INTRON Got1	TF binding site BDTNP1_TFBS_dl
2R	15952386	2R_15952386_SNP [dm3] 2R_20064881_SNP [dm6]	C	T	3.264e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19692312	2R_19692312_SNP [dm3] 2R_23804789_SNP [dm6]	T	C	3.264e^-4	0.917	UPSTREAM CG5539 INTRON CG13561	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21427364	X_21427364_SNP [dm3] X_21556337_SNP [dm6]	T	A	3.264e^-4	0.917	INTERGENIC
3R	26369271	3R_26369271_SNP [dm3] 3R_30543549_SNP [dm6]	A	G	3.265e^-4	0.917	INTRON tmod	TF binding site BDTNP1_TFBS_twi
2L	18183080	2L_18183080_SNP [dm3] 2L_18183080_SNP [dm6]	C	T	3.270e^-4	0.917	SYNONYMOUS_CODING CG7180 INTRON CG42750
3R	17067574	3R_17067574_SNP [dm3] 3R_21241852_SNP [dm6]	C	T	3.287e^-4	0.917	UPSTREAM CG5892 INTERGENIC	regulatory region REDfly_CRMs
3R	6977574	3R_6977574_SNP [dm3] 3R_11151852_SNP [dm6]	C	A	3.287e^-4	0.917	UTR_3_PRIME Ugt86Di DOWNSTREAM Ugt86Di
2R	7766019	2R_7766019_SNP [dm3] 2R_11878514_SNP [dm6]	C	G	3.303e^-4	0.917	INTRON CG13185
3R	11963786	3R_11963786_SNP [dm3] 3R_16138064_SNP [dm6]	G	T	3.309e^-4	0.917	INTRON Sb	TF binding site mE1_TFBS_inv
3R	16328620	3R_16328620_SNP [dm3] 3R_20502898_SNP [dm6]	G	A	3.315e^-4	0.917	UPSTREAM Dic2 DOWNSTREAM MtnB INTERGENIC
3L	16766787	3L_16766787_SNP [dm3] 3L_16773687_SNP [dm6]	T	G	3.337e^-4	0.917	INTRON Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	16766792	3L_16766792_SNP [dm3] 3L_16773692_SNP [dm6]	G	T	3.337e^-4	0.917	INTRON Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	16766793	3L_16766793_SNP [dm3] 3L_16773693_SNP [dm6]	G	A	3.337e^-4	0.917	INTRON Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	2517600	X_2517600_SNP [dm3] X_2623567_SNP [dm6]	T	C	3.345e^-4	0.917	INTRON brv3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_ttk
X	2517620	X_2517620_SNP [dm3] X_2623587_SNP [dm6]	T	C	3.345e^-4	0.917	INTRON brv3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_ttk
X	20339958	X_20339958_SNP [dm3] X_20468931_SNP [dm6]	T	C	3.355e^-4	0.917	INTRON GstT3
X	20340211	X_20340211_SNP [dm3] X_20469184_SNP [dm6]	C	A	3.355e^-4	0.917	SYNONYMOUS_CODING GstT3 DOWNSTREAM RhoGAP19D
X	20340226	X_20340226_SNP [dm3] X_20469199_SNP [dm6]	C	T	3.355e^-4	0.917	SYNONYMOUS_CODING GstT3 DOWNSTREAM RhoGAP19D
3L	10822228	3L_10822228_SNP [dm3] 3L_10829128_SNP [dm6]	C	T	3.369e^-4	0.917	INTERGENIC
2R	7765906	2R_7765906_SNP [dm3] 2R_11878401_SNP [dm6]	A	T	3.374e^-4	0.917	NON_SYNONYMOUS_CODING CG13185
X	12507955	X_12507955_SNP [dm3] X_12613922_SNP [dm6]	A	C	3.391e^-4	0.917	DOWNSTREAM CR45621 INTRON CG2543 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11418413	2R_11418413_SNP [dm3] 2R_15530908_SNP [dm6]	T	G	3.407e^-4	0.917	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22897119	3R_22897119_SNP [dm3] 3R_27071397_SNP [dm6]	G	A	3.409e^-4	0.917	INTERGENIC
3L	17813383	3L_17813383_DEL [dm3] 3L_17820283_DEL [dm6]	GG	G	3.417e^-4	0.917	UPSTREAM Ir75b DOWNSTREAM Ir75c INTERGENIC
2L	6919679	2L_6919679_SNP [dm3] 2L_6919679_SNP [dm6]	A	G	3.429e^-4	0.917	SYNONYMOUS_CODING x16 UPSTREAM nop5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	12023688	2R_12023688_SNP [dm3] 2R_16136183_SNP [dm6]	A	G	3.432e^-4	0.917	SPLICE_SITE_REGION spin INTRON spin
2R	12023760	2R_12023760_SNP [dm3] 2R_16136255_SNP [dm6]	A	T	3.432e^-4	0.917	SYNONYMOUS_CODING spin UTR_3_PRIME spin
2L	2668098	2L_2668098_SNP [dm3] 2L_2668098_SNP [dm6]	A	T	3.442e^-4	0.917	INTERGENIC
2L	5339758	2L_5339758_SNP [dm3] 2L_5339758_SNP [dm6]	T	A	3.442e^-4	0.917	SYNONYMOUS_CODING CG12512	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20331597	3R_20331597_SNP [dm3] 3R_24505875_SNP [dm6]	C	T	3.521e^-4	0.917	INTERGENIC
2L	16450431	2L_16450431_SNP [dm3] 2L_16450431_SNP [dm6]	T	C	3.547e^-4	0.917	SYNONYMOUS_CODING Idgf2 UPSTREAM Idgf3
2L	6556566	2L_6556566_SNP [dm3] 2L_6556566_SNP [dm6]	C	T	3.547e^-4	0.917	SYNONYMOUS_CODING Osm6	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6558515	2L_6558515_SNP [dm3] 2L_6558515_SNP [dm6]	C	T	3.547e^-4	0.917	SYNONYMOUS_CODING CoVb UPSTREAM CG11043 DOWNSTREAM CG9596	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	4757956	2L_4757956_DEL [dm3] 2L_4757956_DEL [dm6]	AC	A	3.549e^-4	0.917	INTRON CG15630
3L	8577664	3L_8577664_SNP [dm3] 3L_8584564_SNP [dm6]	G	A	3.560e^-4	0.917	UPSTREAM CG43078 INTRON CG43078
3L	5908095	3L_5908095_SNP [dm3] 3L_5914995_SNP [dm6]	A	G	3.570e^-4	0.917	INTRON CG13288
X	12513572	X_12513572_SNP [dm3] X_12619539_SNP [dm6]	T	G	3.574e^-4	0.917	INTRON CG11085
2R	13901891	2R_13901891_SNP [dm3] 2R_18014386_SNP [dm6]	G	A	3.602e^-4	0.917	INTERGENIC
2R	17612133	2R_17612133_SNP [dm3] 2R_21724628_SNP [dm6]	A	T	3.619e^-4	0.917	DOWNSTREAM LBR INTERGENIC
2R	1837087	2R_1837087_SNP [dm3] 2R_5949582_SNP [dm6]	C	G	3.620e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15319227	3R_15319227_SNP [dm3] 3R_19493505_SNP [dm6]	T	A	3.630e^-4	0.917	INTRON Dys
2R	17050682	2R_17050682_SNP [dm3] 2R_21163177_SNP [dm6]	C	T	3.634e^-4	0.917	INTRON CG4266
3L	10466173	3L_10466173_SNP [dm3] 3L_10473073_SNP [dm6]	C	A	3.634e^-4	0.917	INTERGENIC
3L	10466292	3L_10466292_SNP [dm3] 3L_10473192_SNP [dm6]	C	T	3.634e^-4	0.917	INTERGENIC
3L	1321786	3L_1321786_SNP [dm3] 3L_1321786_SNP [dm6]	G	C	3.634e^-4	0.917	DOWNSTREAM CG9184 INTRON Myo61F
3R	11854711	3R_11854711_SNP [dm3] 3R_16028989_SNP [dm6]	A	G	3.634e^-4	0.917	INTRON pnr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	26532745	3R_26532745_INS [dm3] 3R_30707023_INS [dm6]	A	ATT	3.634e^-4	0.917	UPSTREAM CG31010 INTERGENIC
3R	26532748	3R_26532748_SNP [dm3] 3R_30707026_SNP [dm6]	T	A	3.634e^-4	0.917	UPSTREAM CG31010 INTERGENIC
3R	26532753	3R_26532753_SNP [dm3] 3R_30707031_SNP [dm6]	T	A	3.634e^-4	0.917	UPSTREAM CG31010 INTERGENIC
3R	26532794	3R_26532794_SNP [dm3] 3R_30707072_SNP [dm6]	G	T	3.634e^-4	0.917	UPSTREAM CG31010 INTERGENIC
3R	26532796	3R_26532796_INS [dm3] 3R_30707074_INS [dm6]	T	TC	3.634e^-4	0.917	UPSTREAM CG31010 INTERGENIC
X	16465879	X_16465879_SNP [dm3] X_16571846_SNP [dm6]	G	A	3.634e^-4	0.917	INTRON CanA-14F
3R	24704886	3R_24704886_SNP [dm3] 3R_28879164_SNP [dm6]	A	C	3.668e^-4	0.917	SYNONYMOUS_CODING CG14523 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25168923	3R_25168923_SNP [dm3] 3R_29343201_SNP [dm6]	A	T	3.670e^-4	0.917	INTERGENIC
3R	26532792	3R_26532792_SNP [dm3] 3R_30707070_SNP [dm6]	C	T	3.677e^-4	0.917	UPSTREAM CG31010 INTERGENIC
3L	10820411	3L_10820411_SNP [dm3] 3L_10827311_SNP [dm6]	T	C	3.704e^-4	0.917	INTERGENIC
X	20333576	X_20333576_SNP [dm3] X_20462549_SNP [dm6]	T	A	3.704e^-4	0.917	SYNONYMOUS_CODING CG32506	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	20338458	X_20338458_SNP [dm3] X_20467431_SNP [dm6]	A	T	3.704e^-4	0.917	UPSTREAM GstT3 DOWNSTREAM CG32506 INTERGENIC
X	2922909	X_2922909_SNP [dm3] X_3028876_SNP [dm6]	G	A	3.704e^-4	0.917	INTRON kirre
X	2922920	X_2922920_SNP [dm3] X_3028887_SNP [dm6]	C	T	3.704e^-4	0.917	INTRON kirre
2L	18240078	2L_18240078_SNP [dm3] 2L_18240078_SNP [dm6]	A	C	3.717e^-4	0.917	INTRON CG42750
3L	4976903	3L_4976903_SNP [dm3] 3L_4976903_SNP [dm6]	T	A	3.762e^-4	0.917	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10567301	2L_10567301_SNP [dm3] 2L_10567301_SNP [dm6]	C	T	3.780e^-4	0.917	UTR_5_PRIME CG6138 INTRON Trim9
2R	13907135	2R_13907135_SNP [dm3] 2R_18019630_SNP [dm6]	C	T	3.803e^-4	0.917	SYNONYMOUS_CODING CG5084 UPSTREAM CG10910	TF binding site mE1_TFBS_cad
2R	13907196	2R_13907196_SNP [dm3] 2R_18019691_SNP [dm6]	A	G	3.803e^-4	0.917	NON_SYNONYMOUS_CODING CG5084 UPSTREAM CG10910	TF binding site mE1_TFBS_cad
2R	13907205	2R_13907205_SNP [dm3] 2R_18019700_SNP [dm6]	A	C	3.803e^-4	0.917	NON_SYNONYMOUS_CODING CG5084 UPSTREAM CG10910	TF binding site mE1_TFBS_cad
2R	14116677	2R_14116677_SNP [dm3] 2R_18229172_SNP [dm6]	A	T	3.803e^-4	0.917	DOWNSTREAM CR45310 EXON CR45311	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	10019338	3L_10019338_SNP [dm3] 3L_10026238_SNP [dm6]	G	A	3.820e^-4	0.917	INTRON dpr6
3L	12608861	3L_12608861_SNP [dm3] 3L_12615761_SNP [dm6]	G	A	3.820e^-4	0.917	INTRON caup	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
3L	9373368	3L_9373368_SNP [dm3] 3L_9380268_SNP [dm6]	A	G	3.820e^-4	0.917	UPSTREAM Hsp67Ba EXON CR43481	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5198520	3R_5198520_SNP [dm3] 3R_9372798_SNP [dm6]	C	G	3.820e^-4	0.917	SYNONYMOUS_CODING FER
3R	22727104	3R_22727104_SNP [dm3] 3R_26901382_SNP [dm6]	A	G	3.893e^-4	0.917	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	6556944	2L_6556944_SNP [dm3] 2L_6556944_SNP [dm6]	C	A	3.904e^-4	0.917	NON_SYNONYMOUS_CODING Osm6 UPSTREAM CoVb	TF binding site mE1_TFBS_cad
2L	6557719	2L_6557719_SNP [dm3] 2L_6557719_SNP [dm6]	C	A	3.927e^-4	0.917	UPSTREAM CoVb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5670982	2L_5670982_SNP [dm3] 2L_5670982_SNP [dm6]	T	C	3.951e^-4	0.917	DOWNSTREAM Hsp60C INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8667992	2L_8667992_SNP [dm3] 2L_8667992_SNP [dm6]	A	G	3.951e^-4	0.917	UTR_3_PRIME Sema-1a DOWNSTREAM Sema-1a
2L	9267847	2L_9267847_SNP [dm3] 2L_9267847_SNP [dm6]	T	A	3.951e^-4	0.917	INTRON Ggamma30A
3L	17817910	3L_17817910_SNP [dm3] 3L_17824810_SNP [dm6]	A	G	3.955e^-4	0.917	INTRON Grd
2L	18216851	2L_18216851_SNP [dm3] 2L_18216851_SNP [dm6]	A	G	3.969e^-4	0.917	INTRON CG42750
2L	18222758	2L_18222758_DEL [dm3] 2L_18222758_DEL [dm6]	ATTGATAATT	C	3.969e^-4	0.917	INTRON CG42750
3L	1291026	3L_1291026_SNP [dm3] 3L_1291026_SNP [dm6]	C	T	3.970e^-4	0.917	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1291053	3L_1291053_SNP [dm3] 3L_1291053_SNP [dm6]	A	G	3.970e^-4	0.917	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1291092	3L_1291092_SNP [dm3] 3L_1291092_SNP [dm6]	G	A	3.970e^-4	0.917	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13334423	3L_13334423_DEL [dm3] 3L_13341323_DEL [dm6]	AACTGCCTCGCTTTA...	A	3.993e^-4	0.917	INTERGENIC
3L	1119472	3L_1119472_SNP [dm3] 3L_1119472_SNP [dm6]	G	A	4.020e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_cad
2R	4527841	2R_4527841_SNP [dm3] 2R_8640336_SNP [dm6]	T	G	4.023e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv
2R	8339597	2R_8339597_SNP [dm3] 2R_12452092_SNP [dm6]	G	A	4.032e^-4	0.917	UTR_3_PRIME Dyb DOWNSTREAM Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12163946	2R_12163946_SNP [dm3] 2R_16276441_SNP [dm6]	T	C	4.032e^-4	0.917	NON_SYNONYMOUS_CODING CG33017
2R	12163992	2R_12163992_SNP [dm3] 2R_16276487_SNP [dm6]	T	A	4.032e^-4	0.917	SYNONYMOUS_CODING CG33017
X	20613360	X_20613360_SNP [dm3] X_20742333_SNP [dm6]	T	C	4.033e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	16376878	3L_16376878_SNP [dm3] 3L_16383778_SNP [dm6]	T	C	4.051e^-4	0.917	SYNONYMOUS_CODING CG4729 UPSTREAM CG4729	TF binding site mE1_TFBS_sens
2R	5648650	2R_5648650_SNP [dm3] 2R_9761145_SNP [dm6]	G	A	4.053e^-4	0.917	INTRON trpl
2L	5916509	2L_5916509_SNP [dm3] 2L_5916509_SNP [dm6]	C	T	4.088e^-4	0.917	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_chinmo
3R	25800889	3R_25800889_SNP [dm3] 3R_29975167_SNP [dm6]	G	A	4.092e^-4	0.917	INTERGENIC
2R	19286562	2R_19286562_SNP [dm3] 2R_23399039_SNP [dm6]	T	C	4.137e^-4	0.917	SYNONYMOUS_CODING CG3520	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8713460	2R_8713460_SNP [dm3] 2R_12825955_SNP [dm6]	A	G	4.137e^-4	0.917	INTERGENIC
X	5927012	X_5927012_SNP [dm3] X_6032979_SNP [dm6]	C	T	4.137e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_sens
2L	7254649	2L_7254649_SNP [dm3] 2L_7254649_SNP [dm6]	G	T	4.139e^-4	0.917	DOWNSTREAM Wnt4 INTERGENIC
X	15121503	X_15121503_SNP [dm3] X_15227470_SNP [dm6]	T	A	4.139e^-4	0.917	INTERGENIC
3R	10614697	3R_10614697_SNP [dm3] 3R_14788975_SNP [dm6]	G	A	4.184e^-4	0.917	INTRON jvl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16762461	3R_16762461_SNP [dm3] 3R_20936739_SNP [dm6]	G	C	4.190e^-4	0.917	INTRON CG31191
3R	9948317	3R_9948317_INS [dm3] 3R_14122595_INS [dm6]	T	TAATT	4.190e^-4	0.917	UPSTREAM twf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	13957640	2L_13957640_SNP [dm3] 2L_13957640_SNP [dm6]	T	G	4.201e^-4	0.917	UTR_5_PRIME NimA UPSTREAM NimA
2R	8924130	2R_8924130_SNP [dm3] 2R_13036625_SNP [dm6]	A	T	4.219e^-4	0.917	INTERGENIC
2L	1364507	2L_1364507_SNP [dm3] 2L_1364507_SNP [dm6]	G	C	4.220e^-4	0.917	INTERGENIC
2L	1364571	2L_1364571_SNP [dm3] 2L_1364571_SNP [dm6]	C	T	4.220e^-4	0.917	INTERGENIC
3L	5427739	3L_5427739_SNP [dm3] 3L_5434639_SNP [dm6]	G	A	4.243e^-4	0.917	INTRON CG34391
2R	12026432	2R_12026432_SNP [dm3] 2R_16138927_SNP [dm6]	T	C	4.278e^-4	0.917	DOWNSTREAM spin INTRON Got1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22883245	3R_22883245_SNP [dm3] 3R_27057523_SNP [dm6]	T	G	4.296e^-4	0.917	DOWNSTREAM Nep5 & 1 other INTRON RYa-R
3R	24704867	3R_24704867_SNP [dm3] 3R_28879145_SNP [dm6]	T	A	4.296e^-4	0.917	NON_SYNONYMOUS_CODING CG14523 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24704900	3R_24704900_SNP [dm3] 3R_28879178_SNP [dm6]	G	T	4.296e^-4	0.917	NON_SYNONYMOUS_CODING CG14523 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24706167	3R_24706167_SNP [dm3] 3R_28880445_SNP [dm6]	T	A	4.296e^-4	0.917	UPSTREAM CG14527 & 1 other INTRON CG33203	TF binding site mE1_TFBS_cad
3R	24720424	3R_24720424_SNP [dm3] 3R_28894702_SNP [dm6]	G	A	4.296e^-4	0.917	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo
3R	9695415	3R_9695415_SNP [dm3] 3R_13869693_SNP [dm6]	A	G	4.296e^-4	0.917	INTRON E5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9938038	2L_9938038_SNP [dm3] 2L_9938038_SNP [dm6]	A	G	4.308e^-4	0.917	UTR_5_PRIME CG31712 UPSTREAM CG4619 DOWNSTREAM Apf EXON CR45007	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2L	8503245	2L_8503245_SNP [dm3] 2L_8503245_SNP [dm6]	C	G	4.313e^-4	0.917	INTRON Dh31
2R	19349919	2R_19349919_SNP [dm3] 2R_23462396_SNP [dm6]	A	G	4.313e^-4	0.917	INTRON CG43795	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17146180	3R_17146180_SNP [dm3] 3R_21320458_SNP [dm6]	T	C	4.320e^-4	0.917	UTR_3_PRIME CG16791 DOWNSTREAM CG16791
3L	19218559	3L_19218559_SNP [dm3] 3L_19225459_SNP [dm6]	C	T	4.331e^-4	0.917	INTRON fz2
3R	24627840	3R_24627840_SNP [dm3] 3R_28802118_SNP [dm6]	G	A	4.420e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18756221	2L_18756221_SNP [dm3] 2L_18756221_SNP [dm6]	A	C	4.424e^-4	0.917	INTERGENIC
2R	13122263	2R_13122263_SNP [dm3] 2R_17234758_SNP [dm6]	T	C	4.448e^-4	0.917	INTRON mbl
3R	23149044	3R_23149044_SNP [dm3] 3R_27323322_SNP [dm6]	A	G	4.485e^-4	0.917	UPSTREAM CG3339 INTERGENIC
3R	9464224	3R_9464224_INS [dm3] 3R_13638502_INS [dm6]	A	AA	4.507e^-4	0.917	UTR_3_PRIME sqd INTRON sqd
X	18847461	X_18847461_SNP [dm3] X_18953428_SNP [dm6]	T	C	4.507e^-4	0.917	INTRON CG43759
2R	5233267	2R_5233267_SNP [dm3] 2R_9345762_SNP [dm6]	G	A	4.511e^-4	0.917	NON_SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
X	17206193	X_17206193_SNP [dm3] X_17312160_SNP [dm6]	C	G	4.513e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	17206201	X_17206201_SNP [dm3] X_17312168_SNP [dm6]	G	A	4.513e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	17206231	X_17206231_INS [dm3] X_17312198_INS [dm6]	A	AGTTTCCGTTTAGATAGTAA...	4.513e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16611431	2R_16611431_SNP [dm3] 2R_20723926_SNP [dm6]	T	C	4.529e^-4	0.917	DOWNSTREAM CR44660 INTRON dpr
2R	16611450	2R_16611450_SNP [dm3] 2R_20723945_SNP [dm6]	C	T	4.529e^-4	0.917	DOWNSTREAM CR44660 INTRON dpr
3R	27275018	3R_27275018_SNP [dm3] 3R_31449296_SNP [dm6]	G	T	4.535e^-4	0.917	INTRON Gprk2
3R	19711215	3R_19711215_SNP [dm3] 3R_23885493_SNP [dm6]	G	C	4.574e^-4	0.917	INTRON Pli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12513597	X_12513597_INS [dm3] X_12619564_INS [dm6]	G	TGCATA	4.596e^-4	0.917	INTRON CG11085
2L	769925	2L_769925_SNP [dm3] 2L_769925_SNP [dm6]	C	T	4.626e^-4	0.917	INTERGENIC
2L	769928	2L_769928_SNP [dm3] 2L_769928_SNP [dm6]	A	G	4.626e^-4	0.917	INTERGENIC
2L	769946	2L_769946_SNP [dm3] 2L_769946_SNP [dm6]	A	C	4.626e^-4	0.917	INTERGENIC
2L	769958	2L_769958_SNP [dm3] 2L_769958_SNP [dm6]	G	T	4.626e^-4	0.917	INTERGENIC
X	19247684	X_19247684_SNP [dm3] X_19353651_SNP [dm6]	G	T	4.648e^-4	0.917	SPLICE_SITE_REGION kek5 START_GAINED kek5 UTR_5_PRIME kek5 INTRON kek5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	26532788	3R_26532788_SNP [dm3] 3R_30707066_SNP [dm6]	A	T	4.668e^-4	0.917	UPSTREAM CG31010 INTERGENIC
2L	10322883	2L_10322883_SNP [dm3] 2L_10322883_SNP [dm6]	C	T	4.670e^-4	0.917	UPSTREAM CG4995 INTRON CG5381 & 1 other
2L	10322889	2L_10322889_SNP [dm3] 2L_10322889_SNP [dm6]	T	C	4.670e^-4	0.917	UPSTREAM CG4995 INTRON CG5381 & 1 other
2L	2644388	2L_2644388_SNP [dm3] 2L_2644388_SNP [dm6]	T	C	4.670e^-4	0.917	INTERGENIC
2L	2853928	2L_2853928_SNP [dm3] 2L_2853928_SNP [dm6]	T	A	4.670e^-4	0.917	INTRON CG3104	TF binding site mE1_TFBS_cnc
2L	2854000	2L_2854000_SNP [dm3] 2L_2854000_SNP [dm6]	T	C	4.670e^-4	0.917	INTRON CG3104	TF binding site mE1_TFBS_cnc
2L	3432719	2L_3432719_SNP [dm3] 2L_3432719_SNP [dm6]	G	C	4.670e^-4	0.917	INTERGENIC
2L	3432755	2L_3432755_SNP [dm3] 2L_3432755_SNP [dm6]	T	A	4.670e^-4	0.917	INTERGENIC
2L	3531844	2L_3531844_SNP [dm3] 2L_3531844_SNP [dm6]	A	T	4.670e^-4	0.917	SYNONYMOUS_CODING Che-13	TF binding site mE1_TFBS_sens
2L	3532202	2L_3532202_SNP [dm3] 2L_3532202_SNP [dm6]	C	T	4.670e^-4	0.917	INTRON Che-13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	3544469	2L_3544469_SNP [dm3] 2L_3544469_SNP [dm6]	G	T	4.670e^-4	0.917	INTRON drm
2L	3575133	2L_3575133_SNP [dm3] 2L_3575133_SNP [dm6]	A	C	4.670e^-4	0.917	UPSTREAM CR43822 INTERGENIC
2L	3575164	2L_3575164_SNP [dm3] 2L_3575164_SNP [dm6]	A	C	4.670e^-4	0.917	UPSTREAM CR43822 INTERGENIC
2L	3575165	2L_3575165_SNP [dm3] 2L_3575165_SNP [dm6]	G	T	4.670e^-4	0.917	UPSTREAM CR43822 INTERGENIC
2L	3575181	2L_3575181_SNP [dm3] 2L_3575181_SNP [dm6]	G	T	4.670e^-4	0.917	UPSTREAM CR43822 INTERGENIC
2L	6414435	2L_6414435_INS [dm3] 2L_6414435_INS [dm6]	A	AGCTTTGTATTAAGTCTTCG...	4.670e^-4	0.917	UTR_3_PRIME CG13982 DOWNSTREAM Tig & 1 other
2L	9872828	2L_9872828_SNP [dm3] 2L_9872828_SNP [dm6]	A	T	4.670e^-4	0.917	INTRON nAChRalpha6
3L	1884972	3L_1884972_SNP [dm3] 3L_1884972_SNP [dm6]	C	T	4.686e^-4	0.917	UTR_5_PRIME Aprt UPSTREAM Tmhs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7526499	2R_7526499_SNP [dm3] 2R_11638994_SNP [dm6]	C	T	4.698e^-4	0.917	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21751952	3R_21751952_SNP [dm3] 3R_25926230_SNP [dm6]	A	G	4.711e^-4	0.917	INTRON CCAP-R
2R	11971422	2R_11971422_SNP [dm3] 2R_16083917_SNP [dm6]	A	G	4.729e^-4	0.917	INTRON Dg	TF binding site mE1_TFBS_cad
3L	7989374	3L_7989374_INS [dm3] 3L_7996274_INS [dm6]	T	TTTTTTG	4.729e^-4	0.917	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad
3L	7989376	3L_7989376_DEL [dm3] 3L_7996276_DEL [dm6]	TA	T	4.729e^-4	0.917	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad
3L	9868567	3L_9868567_SNP [dm3] 3L_9875467_SNP [dm6]	G	A	4.766e^-4	0.917	UPSTREAM CR45406 INTERGENIC
3R	6136514	3R_6136514_SNP [dm3] 3R_10310792_SNP [dm6]	A	G	4.767e^-4	0.917	INTRON CG6293
2L	814505	2L_814505_SNP [dm3] 2L_814505_SNP [dm6]	G	C	4.774e^-4	0.917	SYNONYMOUS_CODING Saf6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3105837	X_3105837_SNP [dm3] X_3211804_SNP [dm6]	C	G	4.786e^-4	0.917	INTRON dnc
2R	19674926	2R_19674926_SNP [dm3] 2R_23787403_SNP [dm6]	G	A	4.790e^-4	0.917	INTRON CG9850
3L	7512907	3L_7512907_SNP [dm3] 3L_7519807_SNP [dm6]	G	A	4.790e^-4	0.917	SYNONYMOUS_CODING ltl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9724186	3L_9724186_SNP [dm3] 3L_9731086_SNP [dm6]	A	C	4.790e^-4	0.917	SYNONYMOUS_CODING ATPsyn-b DOWNSTREAM CG6749	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9726266	3L_9726266_SNP [dm3] 3L_9733166_SNP [dm6]	C	T	4.790e^-4	0.917	SYNONYMOUS_CODING CG6749 DOWNSTREAM mir-4986 & 1 other
X	14996063	X_14996063_SNP [dm3] X_15102030_SNP [dm6]	T	C	4.790e^-4	0.917	SYNONYMOUS_CODING Rab3-GEF
X	3893708	X_3893708_SNP [dm3] X_3999675_SNP [dm6]	G	C	4.824e^-4	0.917	INTERGENIC
3R	14883152	3R_14883152_SNP [dm3] 3R_19057430_SNP [dm6]	T	A	4.829e^-4	0.917	INTRON cdi
2R	7527465	2R_7527465_SNP [dm3] 2R_11639960_SNP [dm6]	C	T	4.834e^-4	0.917	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11423853	2R_11423853_SNP [dm3] 2R_15536348_SNP [dm6]	A	G	4.838e^-4	0.917	SYNONYMOUS_CODING CG30471
2R	11423871	2R_11423871_SNP [dm3] 2R_15536366_SNP [dm6]	A	G	4.838e^-4	0.917	SYNONYMOUS_CODING CG30471
2R	11423875	2R_11423875_SNP [dm3] 2R_15536370_SNP [dm6]	G	A	4.838e^-4	0.917	NON_SYNONYMOUS_CODING CG30471
2R	11423877	2R_11423877_SNP [dm3] 2R_15536372_SNP [dm6]	C	T	4.838e^-4	0.917	SYNONYMOUS_CODING CG30471
2R	11423977	2R_11423977_SNP [dm3] 2R_15536472_SNP [dm6]	T	C	4.838e^-4	0.917	INTRON CG30471
2R	11423980	2R_11423980_SNP [dm3] 2R_15536475_SNP [dm6]	G	T	4.838e^-4	0.917	INTRON CG30471
2R	11423987	2R_11423987_SNP [dm3] 2R_15536482_SNP [dm6]	A	C	4.838e^-4	0.917	INTRON CG30471
2R	11423990	2R_11423990_DEL [dm3] 2R_15536485_DEL [dm6]	AA	A	4.838e^-4	0.917	INTRON CG30471
2R	11423997	2R_11423997_SNP [dm3] 2R_15536492_SNP [dm6]	C	T	4.838e^-4	0.917	SPLICE_SITE_REGION CG30471 INTRON CG30471
2R	11426121	2R_11426121_SNP [dm3] 2R_15538616_SNP [dm6]	G	A	4.838e^-4	0.917	SYNONYMOUS_CODING CG30467 DOWNSTREAM CG30471 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	2335846	X_2335846_SNP [dm3] X_2441813_SNP [dm6]	A	C	4.838e^-4	0.917	DOWNSTREAM tko INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12026437	2R_12026437_SNP [dm3] 2R_16138932_SNP [dm6]	G	A	4.851e^-4	0.917	DOWNSTREAM spin INTRON Got1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18230433	2L_18230433_SNP [dm3] 2L_18230433_SNP [dm6]	A	C	4.864e^-4	0.917	INTRON CG42750	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2919970	2L_2919970_SNP [dm3] 2L_2919970_SNP [dm6]	C	T	4.864e^-4	0.917	INTRON lilli
2L	3578806	2L_3578806_SNP [dm3] 2L_3578806_SNP [dm6]	T	G	4.864e^-4	0.917	INTRON sob	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	3578809	2L_3578809_SNP [dm3] 2L_3578809_SNP [dm6]	T	C	4.864e^-4	0.917	INTRON sob	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	769944	2L_769944_SNP [dm3] 2L_769944_SNP [dm6]	T	G	4.864e^-4	0.917	INTERGENIC
2R	7765529	2R_7765529_SNP [dm3] 2R_11878024_SNP [dm6]	G	T	4.920e^-4	0.917	SYNONYMOUS_CODING CG13185
2R	7766347	2R_7766347_SNP [dm3] 2R_11878842_SNP [dm6]	G	A	4.920e^-4	0.917	SYNONYMOUS_CODING CG13185
2L	18139806	2L_18139806_SNP [dm3] 2L_18139806_SNP [dm6]	G	A	4.927e^-4	0.917	SYNONYMOUS_CODING Socs36E UTR_3_PRIME Socs36E	TF binding site mE1_TFBS_cad
2L	9031516	2L_9031516_SNP [dm3] 2L_9031516_SNP [dm6]	G	A	4.943e^-4	0.917	INTRON CG9582 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6978431	3R_6978431_SNP [dm3] 3R_11152709_SNP [dm6]	C	T	4.952e^-4	0.917	NON_SYNONYMOUS_CODING Ugt86Di
2R	10690609	2R_10690609_SNP [dm3] 2R_14803104_SNP [dm6]	G	T	4.958e^-4	0.917	INTRON kn	regulatory region REDfly_CRMs
2R	12026902	2R_12026902_SNP [dm3] 2R_16139397_SNP [dm6]	C	G	4.958e^-4	0.917	INTRON Got1
2R	14216634	2R_14216634_SNP [dm3] 2R_18329129_SNP [dm6]	A	G	4.958e^-4	0.917	INTRON sbb
2R	14216659	2R_14216659_SNP [dm3] 2R_18329154_SNP [dm6]	C	A	4.958e^-4	0.917	INTRON sbb
2R	14216704	2R_14216704_INS [dm3] 2R_18329199_INS [dm6]	A	TT	4.958e^-4	0.917	INTRON sbb
2R	14216709	2R_14216709_SNP [dm3] 2R_18329204_SNP [dm6]	T	A	4.958e^-4	0.917	INTRON sbb
2R	14216711	2R_14216711_SNP [dm3] 2R_18329206_SNP [dm6]	G	T	4.958e^-4	0.917	INTRON sbb
2R	14216712	2R_14216712_SNP [dm3] 2R_18329207_SNP [dm6]	A	T	4.958e^-4	0.917	INTRON sbb
2R	14216715	2R_14216715_INS [dm3] 2R_18329210_INS [dm6]	A	AGTGTTAA	4.958e^-4	0.917	INTRON sbb
3R	9867620	3R_9867620_SNP [dm3] 3R_14041898_SNP [dm6]	A	C	4.958e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9867630	3R_9867630_SNP [dm3] 3R_14041908_SNP [dm6]	G	A	4.958e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14285088	X_14285088_INS [dm3] X_14391055_INS [dm6]	C	GCGGTTATAAATCA...	4.958e^-4	0.917	INTRON dpr8	TF binding site BDTNP1_TFBS_twi
2L	4317499	2L_4317499_SNP [dm3] 2L_4317499_SNP [dm6]	A	C	4.992e^-4	0.917	INTRON tutl	TF binding site mE1_TFBS_HSA
3L	18823278	3L_18823278_SNP [dm3] 3L_18830178_SNP [dm6]	A	C	5.088e^-4	0.917	INTRON Indy	TF binding site mE1_TFBS_inv
3L	19336947	3L_19336947_SNP [dm3] 3L_19343847_SNP [dm6]	T	G	5.110e^-4	0.917	INTRON CG32206
3L	19336948	3L_19336948_SNP [dm3] 3L_19343848_SNP [dm6]	G	T	5.110e^-4	0.917	INTRON CG32206
3L	2651570	3L_2651570_SNP [dm3] 3L_2651570_SNP [dm6]	T	A	5.129e^-4	0.917	SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
2L	7717821	2L_7717821_SNP [dm3] 2L_7717821_SNP [dm6]	A	G	5.140e^-4	0.917	INTRON CG13793
2R	13871301	2R_13871301_SNP [dm3] 2R_17983796_SNP [dm6]	G	A	5.142e^-4	0.917	INTRON dpr13
2R	5299882	2R_5299882_SNP [dm3] 2R_9412377_SNP [dm6]	G	A	5.142e^-4	0.917	INTRON wun
X	22265455	X_22265455_SNP [dm3] X_22863619_SNP [dm6]	G	T	5.142e^-4	0.917	INTRON CG42346
X	19485846	X_19485846_SNP [dm3] X_19591813_SNP [dm6]	T	A	5.166e^-4	0.917	UPSTREAM CG14205 INTERGENIC
X	19493314	X_19493314_SNP [dm3] X_19599281_SNP [dm6]	G	A	5.170e^-4	0.917	UTR_3_PRIME RpS10b DOWNSTREAM CG14220 & 1 other
2L	3165294	2L_3165294_INS [dm3] 2L_3165294_INS [dm6]	A	AA	5.173e^-4	0.917	INTRON Hydr2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3532136	2L_3532136_SNP [dm3] 2L_3532136_SNP [dm6]	A	G	5.173e^-4	0.917	INTRON Che-13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	6414429	2L_6414429_SNP [dm3] 2L_6414429_SNP [dm6]	A	G	5.173e^-4	0.917	UTR_3_PRIME CG13982 DOWNSTREAM Tig & 1 other
2L	6414431	2L_6414431_SNP [dm3] 2L_6414431_SNP [dm6]	T	A	5.173e^-4	0.917	UTR_3_PRIME CG13982 DOWNSTREAM Tig & 1 other
2L	7254675	2L_7254675_SNP [dm3] 2L_7254675_SNP [dm6]	A	C	5.173e^-4	0.917	DOWNSTREAM Wnt4 INTERGENIC
2L	7254663	2L_7254663_SNP [dm3] 2L_7254663_SNP [dm6]	G	T	5.200e^-4	0.917	DOWNSTREAM Wnt4 INTERGENIC
3L	11838445	3L_11838445_SNP [dm3] 3L_11845345_SNP [dm6]	G	C	5.207e^-4	0.917	INTERGENIC
3R	11424705	3R_11424705_SNP [dm3] 3R_15598983_SNP [dm6]	T	G	5.208e^-4	0.917	INTERGENIC
3R	11424706	3R_11424706_SNP [dm3] 3R_15598984_SNP [dm6]	C	T	5.208e^-4	0.917	INTERGENIC
3R	11424710	3R_11424710_SNP [dm3] 3R_15598988_SNP [dm6]	G	T	5.208e^-4	0.917	INTERGENIC
3R	16891400	3R_16891400_SNP [dm3] 3R_21065678_SNP [dm6]	T	G	5.230e^-4	0.917	UPSTREAM AnxB9 INTRON AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	19484520	X_19484520_SNP [dm3] X_19590487_SNP [dm6]	C	T	5.230e^-4	0.917	UPSTREAM CG14219 INTERGENIC
3R	26363736	3R_26363736_SNP [dm3] 3R_30538014_SNP [dm6]	T	G	5.237e^-4	0.917	UPSTREAM tmod INTRON tmod
3L	13286869	3L_13286869_SNP [dm3] 3L_13293769_SNP [dm6]	A	G	5.237e^-4	0.917	INTERGENIC
3L	13286870	3L_13286870_SNP [dm3] 3L_13293770_SNP [dm6]	T	G	5.237e^-4	0.917	INTERGENIC
3L	17809734	3L_17809734_SNP [dm3] 3L_17816634_SNP [dm6]	T	A	5.250e^-4	0.917	NON_SYNONYMOUS_CODING Ir75a
2L	9586230	2L_9586230_SNP [dm3] 2L_9586230_SNP [dm6]	G	T	5.261e^-4	0.917	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
2R	17318589	2R_17318589_SNP [dm3] 2R_21431084_SNP [dm6]	T	C	5.297e^-4	0.917	INTRON Sdc
2L	4852327	2L_4852327_SNP [dm3] 2L_4852327_SNP [dm6]	T	C	5.301e^-4	0.917	NON_SYNONYMOUS_CODING Mon1 UPSTREAM pog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	12682607	2L_12682607_SNP [dm3] 2L_12682607_SNP [dm6]	C	T	5.318e^-4	0.917	INTRON pdm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	13957768	2L_13957768_SNP [dm3] 2L_13957768_SNP [dm6]	T	A	5.318e^-4	0.917	UTR_5_PRIME NimA UPSTREAM NimA
3R	20608381	3R_20608381_SNP [dm3] 3R_24782659_SNP [dm6]	C	A	5.346e^-4	0.917	SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad
3R	20608409	3R_20608409_SNP [dm3] 3R_24782687_SNP [dm6]	G	A	5.346e^-4	0.917	NON_SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad
3L	2142529	3L_2142529_SNP [dm3] 3L_2142529_SNP [dm6]	A	C	5.349e^-4	0.917	INTRON zormin	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3L	937154	3L_937154_SNP [dm3] 3L_937154_SNP [dm6]	A	G	5.363e^-4	0.917	INTRON Glut1
2L	12685685	2L_12685685_SNP [dm3] 2L_12685685_SNP [dm6]	C	T	5.370e^-4	0.917	SYNONYMOUS_CODING pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24693990	3R_24693990_SNP [dm3] 3R_28868268_SNP [dm6]	G	A	5.374e^-4	0.917	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
3R	24756163	3R_24756163_SNP [dm3] 3R_28930441_SNP [dm6]	C	A	5.374e^-4	0.917	INTRON CG14521
X	20258601	X_20258601_SNP [dm3] X_20387574_SNP [dm6]	G	C	5.380e^-4	0.917	INTERGENIC
3L	3671608	3L_3671608_SNP [dm3] 3L_3671608_SNP [dm6]	C	T	5.410e^-4	0.917	INTERGENIC
X	8251755	X_8251755_SNP [dm3] X_8357722_SNP [dm6]	A	G	5.410e^-4	0.917	INTRON nAChRalpha3
3R	12541603	3R_12541603_SNP [dm3] 3R_16715881_SNP [dm6]	T	A	5.438e^-4	0.917	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25134623	3R_25134623_SNP [dm3] 3R_29308901_SNP [dm6]	C	T	5.438e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	9695395	3R_9695395_SNP [dm3] 3R_13869673_SNP [dm6]	T	C	5.438e^-4	0.917	INTRON E5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8442201	2R_8442201_SNP [dm3] 2R_12554696_SNP [dm6]	A	G	5.459e^-4	0.917	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
3L	2835560	3L_2835560_SNP [dm3] 3L_2835560_SNP [dm6]	C	T	5.459e^-4	0.917	INTRON CG43444
3R	22898062	3R_22898062_SNP [dm3] 3R_27072340_SNP [dm6]	T	C	5.459e^-4	0.917	INTERGENIC
3L	20279518	3L_20279518_SNP [dm3] 3L_20286418_SNP [dm6]	T	C	5.480e^-4	0.917	INTRON gogo
3L	20279983	3L_20279983_SNP [dm3] 3L_20286883_SNP [dm6]	C	G	5.480e^-4	0.917	INTRON gogo
2L	2056888	2L_2056888_SNP [dm3] 2L_2056888_SNP [dm6]	A	T	5.499e^-4	0.917	INTRON Or22c
2R	10509199	2R_10509199_SNP [dm3] 2R_14621694_SNP [dm6]	G	A	5.499e^-4	0.917	UPSTREAM snoRNA:Me18S-C1366 & 4 others EXON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_zfh1
2R	13132622	2R_13132622_SNP [dm3] 2R_17245117_SNP [dm6]	A	G	5.499e^-4	0.917	DOWNSTREAM CG18469 INTRON mbl
2R	16071977	2R_16071977_SNP [dm3] 2R_20184472_SNP [dm6]	G	T	5.499e^-4	0.917	INTERGENIC
2R	16073579	2R_16073579_SNP [dm3] 2R_20186074_SNP [dm6]	C	T	5.499e^-4	0.917	INTERGENIC
2R	16073673	2R_16073673_SNP [dm3] 2R_20186168_SNP [dm6]	T	G	5.499e^-4	0.917	INTERGENIC
2R	16073708	2R_16073708_SNP [dm3] 2R_20186203_SNP [dm6]	G	T	5.499e^-4	0.917	INTERGENIC
2R	16073709	2R_16073709_SNP [dm3] 2R_20186204_SNP [dm6]	T	C	5.499e^-4	0.917	INTERGENIC
2R	16073735	2R_16073735_SNP [dm3] 2R_20186230_SNP [dm6]	T	G	5.499e^-4	0.917	INTERGENIC
2R	16294631	2R_16294631_SNP [dm3] 2R_20407126_SNP [dm6]	A	G	5.499e^-4	0.917	INTERGENIC
2R	16294644	2R_16294644_SNP [dm3] 2R_20407139_SNP [dm6]	T	G	5.499e^-4	0.917	INTERGENIC
2R	16294892	2R_16294892_SNP [dm3] 2R_20407387_SNP [dm6]	T	C	5.499e^-4	0.917	INTERGENIC
2R	18369447	2R_18369447_SNP [dm3] 2R_22481942_SNP [dm6]	C	T	5.499e^-4	0.917	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18824577	2R_18824577_SNP [dm3] 2R_22937054_SNP [dm6]	A	T	5.499e^-4	0.917	UTR_5_PRIME CG3800 UPSTREAM CG9849 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	19693106	2R_19693106_SNP [dm3] 2R_23805583_SNP [dm6]	G	C	5.499e^-4	0.917	NON_SYNONYMOUS_CODING CG5539 DOWNSTREAM Ssrp INTRON CG13561	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19693133	2R_19693133_SNP [dm3] 2R_23805610_SNP [dm6]	A	G	5.499e^-4	0.917	SYNONYMOUS_CODING CG5539 DOWNSTREAM Ssrp INTRON CG13561	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15420696	3L_15420696_SNP [dm3] 3L_15427596_SNP [dm6]	C	A	5.499e^-4	0.917	INTERGENIC
3L	5433463	3L_5433463_SNP [dm3] 3L_5440363_SNP [dm6]	G	C	5.499e^-4	0.917	UTR_3_PRIME CG34391 DOWNSTREAM CG34391
3L	8578819	3L_8578819_SNP [dm3] 3L_8585719_SNP [dm6]	A	T	5.499e^-4	0.917	INTRON CG43078
3L	8583028	3L_8583028_INS [dm3] 3L_8589928_INS [dm6]	T	TT	5.499e^-4	0.917	UPSTREAM CG43078 INTRON CG43078
3L	8584652	3L_8584652_SNP [dm3] 3L_8591552_SNP [dm6]	C	T	5.499e^-4	0.917	SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9886121	3L_9886121_SNP [dm3] 3L_9893021_SNP [dm6]	G	A	5.499e^-4	0.917	UTR_3_PRIME CalpB DOWNSTREAM CG6709 & 2 others
3L	9886140	3L_9886140_SNP [dm3] 3L_9893040_SNP [dm6]	G	A	5.499e^-4	0.917	UTR_3_PRIME CalpB DOWNSTREAM CG6709 & 2 others
3R	26544554	3R_26544554_INS [dm3] 3R_30718832_INS [dm6]	A	AC	5.499e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	17549505	X_17549505_SNP [dm3] X_17655472_SNP [dm6]	T	G	5.499e^-4	0.917	INTRON IntS2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9027296	X_9027296_SNP [dm3] X_9133263_SNP [dm6]	C	G	5.499e^-4	0.917	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	9027298	X_9027298_DEL [dm3] X_9133265_DEL [dm6]	TT	T	5.499e^-4	0.917	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	9027319	X_9027319_SNP [dm3] X_9133286_SNP [dm6]	C	T	5.499e^-4	0.917	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	24656621	3R_24656621_SNP [dm3] 3R_28830899_SNP [dm6]	C	T	5.502e^-4	0.917	INTRON WASp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	24656626	3R_24656626_SNP [dm3] 3R_28830904_SNP [dm6]	A	G	5.502e^-4	0.917	INTRON WASp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	14900801	2R_14900801_SNP [dm3] 2R_19013296_SNP [dm6]	T	C	5.503e^-4	0.917	INTERGENIC
X	19085582	X_19085582_SNP [dm3] X_19191549_SNP [dm6]	A	G	5.503e^-4	0.917	DOWNSTREAM HP1D3csd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	8430554	X_8430554_SNP [dm3] X_8536521_SNP [dm6]	T	C	5.503e^-4	0.917	INTRON Nrg
2L	6328757	2L_6328757_SNP [dm3] 2L_6328757_SNP [dm6]	C	T	5.537e^-4	0.917	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad
3L	9617491	3L_9617491_SNP [dm3] 3L_9624391_SNP [dm6]	T	A	5.549e^-4	0.917	DOWNSTREAM LanB2 INTRON CG3335
3L	15932444	3L_15932444_SNP [dm3] 3L_15939344_SNP [dm6]	T	A	5.557e^-4	0.917	INTRON Pka-C3
3L	2651668	3L_2651668_SNP [dm3] 3L_2651668_SNP [dm6]	G	C	5.561e^-4	0.917	SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
X	14504103	X_14504103_SNP [dm3] X_14610070_SNP [dm6]	G	A	5.614e^-4	0.917	INTRON NetA
2L	6916598	2L_6916598_SNP [dm3] 2L_6916598_SNP [dm6]	G	A	5.650e^-4	0.917	UPSTREAM CG32829 DOWNSTREAM nop5 & 1 other INTRON x16
2R	10046440	2R_10046440_SNP [dm3] 2R_14158935_SNP [dm6]	C	A	5.650e^-4	0.917	NON_SYNONYMOUS_CODING CG13016 DOWNSTREAM CG8257
2R	17761828	2R_17761828_SNP [dm3] 2R_21874323_SNP [dm6]	T	A	5.650e^-4	0.917	INTRON Fili	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	10415182	X_10415182_SNP [dm3] X_10521149_SNP [dm6]	T	C	5.650e^-4	0.917	INTRON spri
X	18847395	X_18847395_SNP [dm3] X_18953362_SNP [dm6]	T	A	5.650e^-4	0.917	INTRON CG43759
X	18847600	X_18847600_SNP [dm3] X_18953567_SNP [dm6]	A	G	5.650e^-4	0.917	INTRON CG43759
2L	7189320	2L_7189320_SNP [dm3] 2L_7189320_SNP [dm6]	G	A	5.656e^-4	0.917	INTRON CG4496	TF binding site BDTNP1_TFBS_dl
3L	14334563	3L_14334563_SNP [dm3] 3L_14341463_SNP [dm6]	A	T	5.674e^-4	0.917	INTRON fz	TF binding site BDTNP1_TFBS_dl
2R	15668507	2R_15668507_DEL [dm3] 2R_19781002_DEL [dm6]	GTTA	T	5.686e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20333495	X_20333495_SNP [dm3] X_20462468_SNP [dm6]	A	C	5.701e^-4	0.917	SYNONYMOUS_CODING CG32506	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11653605	2R_11653605_SNP [dm3] 2R_15766100_SNP [dm6]	C	G	5.707e^-4	0.917	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13464558	3R_13464558_SNP [dm3] 3R_17638836_SNP [dm6]	T	A	5.758e^-4	0.917	UPSTREAM CR45222 INTRON CG43175 & 1 other
2L	1282766	2L_1282766_SNP [dm3] 2L_1282766_SNP [dm6]	G	A	5.793e^-4	0.917	INTRON robo3
2L	1282768	2L_1282768_SNP [dm3] 2L_1282768_SNP [dm6]	G	T	5.793e^-4	0.917	INTRON robo3
2L	16011782	2L_16011782_SNP [dm3] 2L_16011782_SNP [dm6]	G	A	5.793e^-4	0.917	INTRON beat-Ic
2L	16011789	2L_16011789_SNP [dm3] 2L_16011789_SNP [dm6]	A	G	5.793e^-4	0.917	INTRON beat-Ic
2L	16303269	2L_16303269_SNP [dm3] 2L_16303269_SNP [dm6]	A	T	5.793e^-4	0.917	UTR_5_PRIME c_2_M UPSTREAM CG5869	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	16303418	2L_16303418_SNP [dm3] 2L_16303418_SNP [dm6]	A	C	5.793e^-4	0.917	SYNONYMOUS_CODING c_2_M UPSTREAM CG5869	TF binding site BDTNP1_TFBS_dl
2L	16303766	2L_16303766_SNP [dm3] 2L_16303766_SNP [dm6]	T	A	5.793e^-4	0.917	UPSTREAM CG5869 INTRON c_2_M
2L	16303901	2L_16303901_SNP [dm3] 2L_16303901_SNP [dm6]	G	A	5.793e^-4	0.917	NON_SYNONYMOUS_CODING c_2_M UPSTREAM CG5869
2L	1270340	2L_1270340_SNP [dm3] 2L_1270340_SNP [dm6]	C	A	5.794e^-4	0.917	INTRON robo3
2L	16095869	2L_16095869_SNP [dm3] 2L_16095869_SNP [dm6]	A	G	5.794e^-4	0.917	SYNONYMOUS_CODING CG4891
3L	1523973	3L_1523973_SNP [dm3] 3L_1523973_SNP [dm6]	C	A	5.794e^-4	0.917	SPLICE_SITE_REGION CG12090 DOWNSTREAM Psa INTRON CG12090
2R	14321701	2R_14321701_SNP [dm3] 2R_18434196_SNP [dm6]	G	A	5.805e^-4	0.917	INTRON CG30118
X	12837814	X_12837814_SNP [dm3] X_12943781_SNP [dm6]	T	C	5.805e^-4	0.917	INTRON fne
3R	3023399	3R_3023399_SNP [dm3] 3R_7197677_SNP [dm6]	C	G	5.823e^-4	0.917	INTRON lap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19975175	2R_19975175_SNP [dm3] 2R_24087652_SNP [dm6]	G	A	5.854e^-4	0.917	SYNONYMOUS_CODING snama
2L	9272711	2L_9272711_SNP [dm3] 2L_9272711_SNP [dm6]	C	T	5.865e^-4	0.917	INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
2L	4794191	2L_4794191_SNP [dm3] 2L_4794191_SNP [dm6]	A	T	5.887e^-4	0.917	UPSTREAM CG3294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16708646	X_16708646_DEL [dm3] X_16814613_DEL [dm6]	AAGC	TTT	5.902e^-4	0.917	DOWNSTREAM CR44129 INTRON CG4829	TF binding site BDTNP1_TFBS_dl
3R	12386818	3R_12386818_SNP [dm3] 3R_16561096_SNP [dm6]	T	C	5.941e^-4	0.917	INTRON CG42342
3R	25168907	3R_25168907_SNP [dm3] 3R_29343185_SNP [dm6]	G	A	5.941e^-4	0.917	INTERGENIC
3R	3621128	3R_3621128_SNP [dm3] 3R_7795406_SNP [dm6]	C	T	5.941e^-4	0.917	INTRON CG2641
2L	14011695	2L_14011695_SNP [dm3] 2L_14011695_SNP [dm6]	A	G	5.952e^-4	0.917	INTERGENIC
2L	14011700	2L_14011700_SNP [dm3] 2L_14011700_SNP [dm6]	G	A	5.952e^-4	0.917	INTERGENIC
2L	14011702	2L_14011702_SNP [dm3] 2L_14011702_SNP [dm6]	A	C	5.952e^-4	0.917	INTERGENIC
2L	14011717	2L_14011717_SNP [dm3] 2L_14011717_SNP [dm6]	T	C	5.952e^-4	0.917	INTERGENIC
2L	14011719	2L_14011719_SNP [dm3] 2L_14011719_SNP [dm6]	T	G	5.952e^-4	0.917	INTERGENIC
3R	18541464	3R_18541464_SNP [dm3] 3R_22715742_SNP [dm6]	A	G	5.955e^-4	0.917	SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9017646	2L_9017646_SNP [dm3] 2L_9017646_SNP [dm6]	A	G	5.956e^-4	0.917	INTERGENIC
3L	16190303	3L_16190303_SNP [dm3] 3L_16197203_SNP [dm6]	C	G	5.959e^-4	0.917	UPSTREAM CG33687 EXON CR45437
3L	4083161	3L_4083161_SNP [dm3] 3L_4083161_SNP [dm6]	T	G	5.961e^-4	0.917	INTRON Gad1
2L	20073406	2L_20073406_SNP [dm3] 2L_20073406_SNP [dm6]	T	C	5.980e^-4	0.917	SYNONYMOUS_CODING bwa UTR_3_PRIME bwa DOWNSTREAM pr
X	3889775	X_3889775_SNP [dm3] X_3995742_SNP [dm6]	C	G	5.993e^-4	0.917	INTERGENIC
2R	7255745	2R_7255745_SNP [dm3] 2R_11368240_SNP [dm6]	A	T	5.995e^-4	0.917	UPSTREAM CG13204 INTRON CG13204	TF binding site BDTNP1_TFBS_dl
3L	22366454	3L_22366454_SNP [dm3] 3L_22373354_SNP [dm6]	C	T	6.013e^-4	0.917	INTRON Ten-m	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7515758	2L_7515758_SNP [dm3] 2L_7515758_SNP [dm6]	G	A	6.024e^-4	0.917	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_D
2L	8668062	2L_8668062_SNP [dm3] 2L_8668062_SNP [dm6]	G	C	6.024e^-4	0.917	UTR_3_PRIME Sema-1a DOWNSTREAM Sema-1a
3L	13286878	3L_13286878_SNP [dm3] 3L_13293778_SNP [dm6]	A	G	6.027e^-4	0.917	INTERGENIC
2L	5860297	2L_5860297_SNP [dm3] 2L_5860297_SNP [dm6]	A	C	6.052e^-4	0.917	SYNONYMOUS_CODING rau	TF binding site mE1_TFBS_cad
3R	24206356	3R_24206356_SNP [dm3] 3R_28380634_SNP [dm6]	C	A	6.053e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	15843109	2R_15843109_SNP [dm3] 2R_19955604_SNP [dm6]	T	A	6.074e^-4	0.917	UPSTREAM CG44623 DOWNSTREAM CG44622 INTERGENIC
2L	15093320	2L_15093320_DEL [dm3] 2L_15093320_DEL [dm6]	TTGATTAT	T	6.079e^-4	0.917	INTRON CG15270
2R	4157542	2R_4157542_SNP [dm3] 2R_8270037_SNP [dm6]	G	T	6.083e^-4	0.917	UPSTREAM CG30371 INTERGENIC
3R	20992066	3R_20992066_SNP [dm3] 3R_25166344_SNP [dm6]	C	T	6.118e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7223452	2R_7223452_SNP [dm3] 2R_11335947_SNP [dm6]	T	C	6.130e^-4	0.917	SYNONYMOUS_CODING sha UPSTREAM lambdaTry	TF binding site mE1_TFBS_cad
3R	13969180	3R_13969180_SNP [dm3] 3R_18143458_SNP [dm6]	A	G	6.173e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	21987554	X_21987554_SNP [dm3] X_22585718_SNP [dm6]	G	T	6.238e^-4	0.917	INTRON Cda4	TF binding site mE1_TFBS_HSA
3L	14432583	3L_14432583_SNP [dm3] 3L_14439483_SNP [dm6]	A	T	6.245e^-4	0.917	INTRON bbg
3L	14432737	3L_14432737_SNP [dm3] 3L_14439637_SNP [dm6]	T	C	6.245e^-4	0.917	INTRON bbg
3L	16257485	3L_16257485_DEL [dm3] 3L_16264385_DEL [dm6]	AA	A	6.254e^-4	0.917	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	21389022	3R_21389022_SNP [dm3] 3R_25563300_SNP [dm6]	T	C	6.254e^-4	0.917	INTRON msi
2L	763098	2L_763098_SNP [dm3] 2L_763098_SNP [dm6]	A	G	6.261e^-4	0.917	DOWNSTREAM GABA-B-R3 INTERGENIC
3L	1814909	3L_1814909_SNP [dm3] 3L_1814909_SNP [dm6]	C	A	6.264e^-4	0.917	INTRON GV1
3R	16756693	3R_16756693_SNP [dm3] 3R_20930971_SNP [dm6]	C	A	6.267e^-4	0.917	INTRON CG31191
3R	22696144	3R_22696144_INS [dm3] 3R_26870422_INS [dm6]	T	TTAGAATTATATT...	6.269e^-4	0.917	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	12967661	3R_12967661_SNP [dm3] 3R_17141939_SNP [dm6]	G	A	6.274e^-4	0.917	SYNONYMOUS_CODING TwdlW DOWNSTREAM CG5265	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1868417	X_1868417_SNP [dm3] X_1974384_SNP [dm6]	G	A	6.287e^-4	0.917	INTRON Hr4	TF binding site mE1_TFBS_Trl
3L	14435275	3L_14435275_SNP [dm3] 3L_14442175_SNP [dm6]	C	T	6.288e^-4	0.917	INTRON bbg
3L	14435448	3L_14435448_SNP [dm3] 3L_14442348_SNP [dm6]	A	C	6.288e^-4	0.917	INTRON bbg
2L	18219571	2L_18219571_SNP [dm3] 2L_18219571_SNP [dm6]	A	G	6.309e^-4	0.917	INTRON CG42750
2L	18219752	2L_18219752_SNP [dm3] 2L_18219752_SNP [dm6]	A	T	6.309e^-4	0.917	INTRON CG42750
2L	18240063	2L_18240063_SNP [dm3] 2L_18240063_SNP [dm6]	A	C	6.309e^-4	0.917	INTRON CG42750
2L	18240301	2L_18240301_DEL [dm3] 2L_18240301_DEL [dm6]	AGTTTACCGGAA...	A	6.309e^-4	0.917	INTRON CG42750
2L	18240417	2L_18240417_SNP [dm3] 2L_18240417_SNP [dm6]	A	G	6.309e^-4	0.917	INTRON CG42750
3L	20964980	3L_20964980_SNP [dm3] 3L_20971880_SNP [dm6]	T	C	6.320e^-4	0.917	NON_SYNONYMOUS_CODING CG33286	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14788411	3R_14788411_DEL [dm3] 3R_18962689_DEL [dm6]	GG	C	6.355e^-4	0.917	INTRON CG42613 & 1 other
3R	4026898	3R_4026898_DEL [dm3] 3R_8201176_DEL [dm6]	TA	T	6.369e^-4	0.917	UPSTREAM CR43303 INTERGENIC	TF binding site mE1_TFBS_cad
2R	17566969	2R_17566969_SNP [dm3] 2R_21679464_SNP [dm6]	C	G	6.376e^-4	0.917	NON_SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	721205	3L_721205_SNP [dm3] 3L_721205_SNP [dm6]	C	T	6.376e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	721259	3L_721259_SNP [dm3] 3L_721259_SNP [dm6]	A	T	6.376e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	721262	3L_721262_SNP [dm3] 3L_721262_SNP [dm6]	G	A	6.376e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	721272	3L_721272_SNP [dm3] 3L_721272_SNP [dm6]	T	A	6.376e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2923071	X_2923071_DEL [dm3] X_3029038_DEL [dm6]	TT	T	6.378e^-4	0.917	INTRON kirre
2R	16785315	2R_16785315_SNP [dm3] 2R_20897810_SNP [dm6]	T	A	6.399e^-4	0.917	UPSTREAM otp INTRON otp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18445138	2R_18445138_SNP [dm3] 2R_22557633_SNP [dm6]	A	G	6.399e^-4	0.917	INTRON px
2R	18445148	2R_18445148_SNP [dm3] 2R_22557643_SNP [dm6]	T	C	6.399e^-4	0.917	INTRON px
3L	2605448	3L_2605448_SNP [dm3] 3L_2605448_SNP [dm6]	C	A	6.399e^-4	0.917	INTRON Pxn	TF binding site mE1_TFBS_chinmo
3R	16047138	3R_16047138_SNP [dm3] 3R_20221416_SNP [dm6]	G	A	6.399e^-4	0.917	INTRON Nlg4
X	12513570	X_12513570_SNP [dm3] X_12619537_SNP [dm6]	A	T	6.400e^-4	0.917	INTRON CG11085
2L	9272665	2L_9272665_SNP [dm3] 2L_9272665_SNP [dm6]	T	A	6.426e^-4	0.917	INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
3R	19533175	3R_19533175_SNP [dm3] 3R_23707453_SNP [dm6]	T	C	6.434e^-4	0.917	UPSTREAM CR44052 INTRON CG31414
3R	19533176	3R_19533176_DEL [dm3] 3R_23707454_DEL [dm6]	CT	C	6.434e^-4	0.917	UPSTREAM CR44052 INTRON CG31414
2R	12346527	2R_12346527_SNP [dm3] 2R_16459022_SNP [dm6]	T	C	6.434e^-4	0.917	INTERGENIC
2R	12346558	2R_12346558_SNP [dm3] 2R_16459053_SNP [dm6]	C	A	6.434e^-4	0.917	INTERGENIC
2R	12346576	2R_12346576_INS [dm3] 2R_16459071_INS [dm6]	A	AAAATATTACGAA...	6.434e^-4	0.917	INTERGENIC
2R	12346645	2R_12346645_SNP [dm3] 2R_16459140_SNP [dm6]	A	G	6.434e^-4	0.917	INTERGENIC
2R	12346646	2R_12346646_SNP [dm3] 2R_16459141_SNP [dm6]	C	A	6.434e^-4	0.917	INTERGENIC
3L	13888355	3L_13888355_SNP [dm3] 3L_13895255_SNP [dm6]	C	T	6.434e^-4	0.917	INTRON dysc
2R	11845009	2R_11845009_SNP [dm3] 2R_15957504_SNP [dm6]	T	C	6.450e^-4	0.917	UPSTREAM Strn-Mlck DOWNSTREAM CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
3R	24704705	3R_24704705_SNP [dm3] 3R_28878983_SNP [dm6]	C	T	6.450e^-4	0.917	NON_SYNONYMOUS_CODING CG14523 INTRON CG33203	TF binding site mE1_TFBS_cad
2R	11300838	2R_11300838_SNP [dm3] 2R_15413333_SNP [dm6]	A	T	6.461e^-4	0.917	INTRON CG43729
3R	20530784	3R_20530784_SNP [dm3] 3R_24705062_SNP [dm6]	C	A	6.495e^-4	0.917	INTRON slo
3L	16191019	3L_16191019_SNP [dm3] 3L_16197919_SNP [dm6]	T	A	6.604e^-4	0.917	UPSTREAM CR45437 INTRON CG33687
2L	2856358	2L_2856358_SNP [dm3] 2L_2856358_SNP [dm6]	C	A	6.607e^-4	0.917	UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2856419	2L_2856419_SNP [dm3] 2L_2856419_SNP [dm6]	C	T	6.607e^-4	0.917	SYNONYMOUS_CODING RpS21 UPSTREAM CG3104 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2856613	2L_2856613_SNP [dm3] 2L_2856613_SNP [dm6]	G	C	6.607e^-4	0.917	UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	2856615	2L_2856615_SNP [dm3] 2L_2856615_SNP [dm6]	A	C	6.607e^-4	0.917	UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	2856623	2L_2856623_SNP [dm3] 2L_2856623_SNP [dm6]	C	T	6.607e^-4	0.917	SPLICE_SITE_REGION RpS21 UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	2856922	2L_2856922_SNP [dm3] 2L_2856922_SNP [dm6]	G	A	6.607e^-4	0.917	UTR_3_PRIME RpS21 UPSTREAM CG2991 DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	2856926	2L_2856926_SNP [dm3] 2L_2856926_SNP [dm6]	T	A	6.607e^-4	0.917	UTR_3_PRIME RpS21 UPSTREAM CG2991 DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	6574229	2L_6574229_SNP [dm3] 2L_6574229_SNP [dm6]	G	A	6.607e^-4	0.917	SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad
3L	12079010	3L_12079010_SNP [dm3] 3L_12085910_SNP [dm6]	T	C	6.632e^-4	0.917	INTERGENIC
3L	16257488	3L_16257488_SNP [dm3] 3L_16264388_SNP [dm6]	C	T	6.644e^-4	0.917	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	11424757	3R_11424757_SNP [dm3] 3R_15599035_SNP [dm6]	C	T	6.660e^-4	0.917	INTERGENIC
3L	3484522	3L_3484522_SNP [dm3] 3L_3484522_SNP [dm6]	C	A	6.670e^-4	0.917	INTRON CG42324 & 1 other
X	3093244	X_3093244_SNP [dm3] X_3199211_SNP [dm6]	A	G	6.693e^-4	0.917	INTRON dnc
3L	9724718	3L_9724718_SNP [dm3] 3L_9731618_SNP [dm6]	C	G	6.697e^-4	0.917	SYNONYMOUS_CODING CG6749 DOWNSTREAM ATPsyn-b	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8261626	X_8261626_SNP [dm3] X_8367593_SNP [dm6]	T	C	6.697e^-4	0.917	UPSTREAM nAChRalpha3 INTERGENIC
3R	9912066	3R_9912066_SNP [dm3] 3R_14086344_SNP [dm6]	C	T	6.726e^-4	0.917	INTRON foxo
X	5038023	X_5038023_INS [dm3] X_5143990_INS [dm6]	T	TA	6.766e^-4	0.917	INTRON rg & 1 other
3R	16756671	3R_16756671_SNP [dm3] 3R_20930949_SNP [dm6]	A	G	6.771e^-4	0.917	SPLICE_SITE_REGION CG31191 INTRON CG31191
3R	6851091	3R_6851091_SNP [dm3] 3R_11025369_SNP [dm6]	A	T	6.780e^-4	0.917	INTRON CG34114
3L	10466162	3L_10466162_DEL [dm3] 3L_10473062_DEL [dm6]	TT	T	6.788e^-4	0.917	INTERGENIC
2L	6020172	2L_6020172_SNP [dm3] 2L_6020172_SNP [dm6]	A	G	6.808e^-4	0.917	UPSTREAM H2.0 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9500349	2L_9500349_SNP [dm3] 2L_9500349_SNP [dm6]	T	G	6.808e^-4	0.917	INTRON CG33298
2L	10322884	2L_10322884_SNP [dm3] 2L_10322884_SNP [dm6]	G	A	6.835e^-4	0.917	UPSTREAM CG4995 INTRON CG5381 & 1 other
2L	10322900	2L_10322900_SNP [dm3] 2L_10322900_SNP [dm6]	G	T	6.835e^-4	0.917	UTR_5_PRIME CG5381 UPSTREAM CG4995 INTRON CG4995
2L	3575169	2L_3575169_SNP [dm3] 2L_3575169_SNP [dm6]	A	G	6.835e^-4	0.917	UPSTREAM CR43822 INTERGENIC
2L	3575175	2L_3575175_SNP [dm3] 2L_3575175_SNP [dm6]	C	G	6.835e^-4	0.917	UPSTREAM CR43822 INTERGENIC
2L	3575176	2L_3575176_SNP [dm3] 2L_3575176_SNP [dm6]	T	C	6.835e^-4	0.917	UPSTREAM CR43822 INTERGENIC
2L	3575178	2L_3575178_SNP [dm3] 2L_3575178_SNP [dm6]	T	C	6.835e^-4	0.917	UPSTREAM CR43822 INTERGENIC
2L	3575190	2L_3575190_INS [dm3] 2L_3575190_INS [dm6]	T	TATTTT	6.835e^-4	0.917	UPSTREAM CR43822 INTERGENIC
2L	3575192	2L_3575192_SNP [dm3] 2L_3575192_SNP [dm6]	C	T	6.835e^-4	0.917	UPSTREAM CR43822 INTERGENIC
2L	3575193	2L_3575193_SNP [dm3] 2L_3575193_SNP [dm6]	G	A	6.835e^-4	0.917	UPSTREAM CR43822 INTERGENIC
2L	3575203	2L_3575203_SNP [dm3] 2L_3575203_SNP [dm6]	T	A	6.835e^-4	0.917	UPSTREAM CR43822 INTERGENIC
X	20338367	X_20338367_SNP [dm3] X_20467340_SNP [dm6]	G	A	6.835e^-4	0.917	UPSTREAM GstT3 DOWNSTREAM CG32506 INTERGENIC
3R	22069813	3R_22069813_SNP [dm3] 3R_26244091_SNP [dm6]	A	C	6.876e^-4	0.917	INTRON CR42745
X	632683	X_632683_SNP [dm3] X_738650_SNP [dm6]	G	T	6.885e^-4	0.917	INTRON sdk
3R	19196652	3R_19196652_SNP [dm3] 3R_23370930_SNP [dm6]	T	A	6.887e^-4	0.917	INTERGENIC
3R	19196653	3R_19196653_SNP [dm3] 3R_23370931_SNP [dm6]	T	A	6.887e^-4	0.917	INTERGENIC
3R	19196657	3R_19196657_SNP [dm3] 3R_23370935_SNP [dm6]	C	T	6.887e^-4	0.917	INTERGENIC
X	17163071	X_17163071_SNP [dm3] X_17269038_SNP [dm6]	T	A	6.904e^-4	0.917	INTRON f
3R	3019746	3R_3019746_SNP [dm3] 3R_7194024_SNP [dm6]	G	A	6.909e^-4	0.917	INTRON lap
2R	17902064	2R_17902064_SNP [dm3] 2R_22014559_SNP [dm6]	T	C	6.913e^-4	0.917	INTRON CG34370
X	4525425	X_4525425_SNP [dm3] X_4631392_SNP [dm6]	A	G	6.938e^-4	0.917	UTR_3_PRIME CG12179 UPSTREAM CG12184
3L	7784440	3L_7784440_SNP [dm3] 3L_7791340_SNP [dm6]	C	T	6.946e^-4	0.917	INTRON CG32369
2R	7151349	2R_7151349_SNP [dm3] 2R_11263844_SNP [dm6]	T	A	6.951e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2R	9515731	2R_9515731_SNP [dm3] 2R_13628226_SNP [dm6]	A	G	6.980e^-4	0.917	INTRON fas
2R	18418643	2R_18418643_SNP [dm3] 2R_22531138_SNP [dm6]	A	T	6.989e^-4	0.917	INTRON px
3L	12046072	3L_12046072_SNP [dm3] 3L_12052972_SNP [dm6]	G	A	6.989e^-4	0.917	INTRON rols
3L	12987973	3L_12987973_SNP [dm3] 3L_12994873_SNP [dm6]	G	T	6.989e^-4	0.917	UPSTREAM CG11262 INTERGENIC
3L	22962399	3L_22962399_SNP [dm3] 3L_22969299_SNP [dm6]	C	G	6.989e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	15827234	3R_15827234_SNP [dm3] 3R_20001512_SNP [dm6]	T	A	6.989e^-4	0.917	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
3R	18996431	3R_18996431_SNP [dm3] 3R_23170709_SNP [dm6]	T	A	6.989e^-4	0.917	INTRON Irk1
3R	11390767	3R_11390767_SNP [dm3] 3R_15565045_SNP [dm6]	A	T	6.993e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	11141337	3R_11141337_SNP [dm3] 3R_15315615_SNP [dm6]	T	C	7.023e^-4	0.917	UPSTREAM CG14866 DOWNSTREAM Tm2 INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	21717075	3R_21717075_SNP [dm3] 3R_25891353_SNP [dm6]	T	A	7.023e^-4	0.917	SYNONYMOUS_CODING Lnk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11689773	2R_11689773_SNP [dm3] 2R_15802268_SNP [dm6]	A	C	7.045e^-4	0.917	INTRON Zasp52 & 1 other
2R	14154438	2R_14154438_SNP [dm3] 2R_18266933_SNP [dm6]	T	A	7.045e^-4	0.917	INTERGENIC
3L	2445295	3L_2445295_SNP [dm3] 3L_2445295_SNP [dm6]	C	T	7.074e^-4	0.917	SYNONYMOUS_CODING CG45186	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9723754	3L_9723754_SNP [dm3] 3L_9730654_SNP [dm6]	C	A	7.118e^-4	0.917	DOWNSTREAM CG6749 INTRON ATPsyn-b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14304576	2L_14304576_SNP [dm3] 2L_14304576_SNP [dm6]	G	A	7.132e^-4	0.917	INTRON wb	TF binding site mE1_TFBS_inv
2R	11426055	2R_11426055_SNP [dm3] 2R_15538550_SNP [dm6]	A	G	7.139e^-4	0.917	SYNONYMOUS_CODING CG30467 DOWNSTREAM CG30471	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	6689467	2L_6689467_SNP [dm3] 2L_6689467_SNP [dm6]	T	C	7.145e^-4	0.917	UPSTREAM Tsp DOWNSTREAM Tsp INTRON Tsp
2L	6689478	2L_6689478_SNP [dm3] 2L_6689478_SNP [dm6]	A	G	7.145e^-4	0.917	UPSTREAM Tsp DOWNSTREAM Tsp INTRON Tsp
2L	9272676	2L_9272676_SNP [dm3] 2L_9272676_SNP [dm6]	A	C	7.149e^-4	0.917	INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
3L	14070697	3L_14070697_SNP [dm3] 3L_14077597_SNP [dm6]	G	A	7.150e^-4	0.917	INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	12163939	2R_12163939_SNP [dm3] 2R_16276434_SNP [dm6]	A	C	7.151e^-4	0.917	NON_SYNONYMOUS_CODING CG33017
X	12507987	X_12507987_SNP [dm3] X_12613954_SNP [dm6]	C	T	7.155e^-4	0.917	DOWNSTREAM CR45621 INTRON CG2543 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14782039	X_14782039_DEL [dm3] X_14888006_DEL [dm6]	CTACTCTTCTAATATTTGTA...	C	7.188e^-4	0.917	INTRON Flo2 & 1 other
3R	24630513	3R_24630513_SNP [dm3] 3R_28804791_SNP [dm6]	A	T	7.220e^-4	0.917	INTERGENIC
2L	6589467	2L_6589467_SNP [dm3] 2L_6589467_SNP [dm6]	C	G	7.230e^-4	0.917	INTRON CG11319
3L	2431577	3L_2431577_SNP [dm3] 3L_2431577_SNP [dm6]	T	G	7.234e^-4	0.917	INTRON CG45186
3L	2431610	3L_2431610_SNP [dm3] 3L_2431610_SNP [dm6]	C	A	7.234e^-4	0.917	INTRON CG45186
3L	12042901	3L_12042901_INS [dm3] 3L_12049801_INS [dm6]	C	CACGTACTGC	7.234e^-4	0.917	INTRON rols
2R	9444958	2R_9444958_SNP [dm3] 2R_13557453_SNP [dm6]	A	T	7.236e^-4	0.917	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9444972	2R_9444972_SNP [dm3] 2R_13557467_SNP [dm6]	A	C	7.236e^-4	0.917	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9444978	2R_9444978_SNP [dm3] 2R_13557473_SNP [dm6]	A	T	7.236e^-4	0.917	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	5633196	3L_5633196_SNP [dm3] 3L_5640096_SNP [dm6]	C	A	7.237e^-4	0.917	INTRON Blimp-1
3L	6103239	3L_6103239_SNP [dm3] 3L_6110139_SNP [dm6]	A	G	7.268e^-4	0.917	INTRON Ets65A	TF binding site mE1_TFBS_cad
X	11043071	X_11043071_SNP [dm3] X_11149038_SNP [dm6]	T	C	7.289e^-4	0.917	UPSTREAM Lint-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	11418432	2R_11418432_SNP [dm3] 2R_15530927_SNP [dm6]	C	T	7.298e^-4	0.917	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6732347	2R_6732347_SNP [dm3] 2R_10844842_SNP [dm6]	C	G	7.309e^-4	0.917	UPSTREAM CG30015 INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24213358	3R_24213358_DEL [dm3] 3R_28387636_DEL [dm6]	CA	C	7.309e^-4	0.917	INTERGENIC
3R	24695084	3R_24695084_SNP [dm3] 3R_28869362_SNP [dm6]	C	T	7.309e^-4	0.917	NON_SYNONYMOUS_CODING spg UTR_3_PRIME spg	TF binding site mE1_TFBS_chinmo
3R	9759076	3R_9759076_SNP [dm3] 3R_13933354_SNP [dm6]	T	G	7.309e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	5018407	X_5018407_SNP [dm3] X_5124374_SNP [dm6]	G	T	7.309e^-4	0.917	INTRON rg & 1 other
X	5018434	X_5018434_SNP [dm3] X_5124401_SNP [dm6]	C	A	7.309e^-4	0.917	INTRON rg & 1 other
X	5018443	X_5018443_DEL [dm3] X_5124410_DEL [dm6]	TTTCAAAGTCCCACTTT...	T	7.309e^-4	0.917	INTRON rg & 1 other
X	5018487	X_5018487_SNP [dm3] X_5124454_SNP [dm6]	C	T	7.309e^-4	0.917	INTRON rg & 1 other
3L	20280114	3L_20280114_SNP [dm3] 3L_20287014_SNP [dm6]	A	G	7.314e^-4	0.917	INTRON gogo
3R	17813282	3R_17813282_SNP [dm3] 3R_21987560_SNP [dm6]	A	C	7.314e^-4	0.917	INTRON Eip93F
2L	13618702	2L_13618702_SNP [dm3] 2L_13618702_SNP [dm6]	T	G	7.316e^-4	0.917	INTRON kuz
2R	17730851	2R_17730851_SNP [dm3] 2R_21843346_SNP [dm6]	T	C	7.316e^-4	0.917	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11393766	2R_11393766_SNP [dm3] 2R_15506261_SNP [dm6]	T	A	7.319e^-4	0.917	UPSTREAM Ir52d DOWNSTREAM Ir52c INTERGENIC
2R	6615684	2R_6615684_SNP [dm3] 2R_10728179_SNP [dm6]	C	T	7.319e^-4	0.917	DOWNSTREAM CG12309 INTRON Rab3
2R	6615691	2R_6615691_INS [dm3] 2R_10728186_INS [dm6]	T	TTTCAGTTTACTTGTTTG...	7.319e^-4	0.917	DOWNSTREAM CG12309 INTRON Rab3
2R	12372445	2R_12372445_SNP [dm3] 2R_16484940_SNP [dm6]	A	G	7.324e^-4	0.917	SYNONYMOUS_CODING CG15712	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13834369	2R_13834369_SNP [dm3] 2R_17946864_SNP [dm6]	A	G	7.324e^-4	0.917	INTERGENIC
X	17634557	X_17634557_SNP [dm3] X_17740524_SNP [dm6]	T	C	7.324e^-4	0.917	SYNONYMOUS_CODING CG42684 INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	11127560	X_11127560_SNP [dm3] X_11233527_SNP [dm6]	T	C	7.384e^-4	0.917	INTRON CG44422	TF binding site mE1_TFBS_HSA
2R	13446656	2R_13446656_SNP [dm3] 2R_17559151_SNP [dm6]	G	T	7.386e^-4	0.917	INTRON Klp54D
2L	13921302	2L_13921302_DEL [dm3] 2L_13921302_DEL [dm6]	TGT	T	7.421e^-4	0.917	UTR_3_PRIME CG16886 INTRON Ance-3	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16500914	2R_16500914_SNP [dm3] 2R_20613409_SNP [dm6]	A	G	7.421e^-4	0.917	SYNONYMOUS_CODING Hil
2L	16234557	2L_16234557_SNP [dm3] 2L_16234557_SNP [dm6]	A	T	7.427e^-4	0.917	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7375826	2L_7375826_SNP [dm3] 2L_7375826_SNP [dm6]	T	C	7.449e^-4	0.917	SPLICE_SITE_REGION Wnt10 INTRON Wnt10
3R	9867575	3R_9867575_SNP [dm3] 3R_14041853_SNP [dm6]	C	T	7.488e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	11424701	3R_11424701_SNP [dm3] 3R_15598979_SNP [dm6]	T	G	7.504e^-4	0.917	INTERGENIC
3R	25821475	3R_25821475_SNP [dm3] 3R_29995753_SNP [dm6]	T	A	7.514e^-4	0.917	NON_SYNONYMOUS_CODING Sas-6 UPSTREAM CG7903	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	3105838	X_3105838_SNP [dm3] X_3211805_SNP [dm6]	T	C	7.524e^-4	0.917	INTRON dnc
3L	5166576	3L_5166576_SNP [dm3] 3L_5173476_SNP [dm6]	C	G	7.548e^-4	0.917	INTRON shep
3L	5166578	3L_5166578_SNP [dm3] 3L_5173478_SNP [dm6]	G	A	7.548e^-4	0.917	INTRON shep
3L	5864609	3L_5864609_SNP [dm3] 3L_5871509_SNP [dm6]	A	T	7.574e^-4	0.917	UTR_5_PRIME CG5568
X	14042362	X_14042362_SNP [dm3] X_14148329_SNP [dm6]	A	G	7.574e^-4	0.917	INTERGENIC
2R	13906616	2R_13906616_SNP [dm3] 2R_18019111_SNP [dm6]	T	A	7.580e^-4	0.917	SYNONYMOUS_CODING CG5084	TF binding site mE1_TFBS_cad
2R	10716148	2R_10716148_SNP [dm3] 2R_14828643_SNP [dm6]	A	G	7.610e^-4	0.917	INTERGENIC
2R	11442766	2R_11442766_SNP [dm3] 2R_15555261_SNP [dm6]	C	G	7.610e^-4	0.917	UPSTREAM CG12963 INTERGENIC
3L	11689705	3L_11689705_SNP [dm3] 3L_11696605_SNP [dm6]	G	C	7.610e^-4	0.917	UPSTREAM CG11652 DOWNSTREAM CG6053 INTRON CG11652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	11689706	3L_11689706_SNP [dm3] 3L_11696606_SNP [dm6]	A	G	7.610e^-4	0.917	UPSTREAM CG11652 DOWNSTREAM CG6053 INTRON CG11652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	13316069	3L_13316069_SNP [dm3] 3L_13322969_SNP [dm6]	C	A	7.610e^-4	0.917	INTERGENIC
2R	4162246	2R_4162246_SNP [dm3] 2R_8274741_SNP [dm6]	C	A	7.619e^-4	0.917	INTERGENIC
2R	12023662	2R_12023662_SNP [dm3] 2R_16136157_SNP [dm6]	T	A	7.644e^-4	0.917	INTRON spin
3L	12212298	3L_12212298_SNP [dm3] 3L_12219198_SNP [dm6]	G	A	7.653e^-4	0.917	INTRON app
3L	7150939	3L_7150939_SNP [dm3] 3L_7157839_SNP [dm6]	G	T	7.684e^-4	0.917	UPSTREAM corn & 1 other INTERGENIC
X	9491280	X_9491280_SNP [dm3] X_9597247_SNP [dm6]	A	T	7.684e^-4	0.917	INTERGENIC
2L	18222771	2L_18222771_SNP [dm3] 2L_18222771_SNP [dm6]	A	T	7.710e^-4	0.917	INTRON CG42750
2L	18222773	2L_18222773_SNP [dm3] 2L_18222773_SNP [dm6]	T	G	7.710e^-4	0.917	INTRON CG42750
2L	18222782	2L_18222782_SNP [dm3] 2L_18222782_SNP [dm6]	A	T	7.710e^-4	0.917	INTRON CG42750
2R	16294650	2R_16294650_SNP [dm3] 2R_20407145_SNP [dm6]	G	A	7.754e^-4	0.917	INTERGENIC
2R	16294653	2R_16294653_SNP [dm3] 2R_20407148_SNP [dm6]	G	C	7.754e^-4	0.917	INTERGENIC
X	16997254	X_16997254_SNP [dm3] X_17103221_SNP [dm6]	C	T	7.754e^-4	0.917	SYNONYMOUS_CODING CG4991
2L	4652286	2L_4652286_SNP [dm3] 2L_4652286_SNP [dm6]	T	C	7.765e^-4	0.917	UTR_3_PRIME CG3355 INTRON CG3355	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9488835	2R_9488835_SNP [dm3] 2R_13601330_SNP [dm6]	T	C	7.799e^-4	0.917	UPSTREAM CG43058 INTERGENIC
2R	14901265	2R_14901265_SNP [dm3] 2R_19013760_SNP [dm6]	C	T	7.811e^-4	0.917	INTERGENIC
X	12513573	X_12513573_SNP [dm3] X_12619540_SNP [dm6]	T	G	7.826e^-4	0.917	INTRON CG11085
X	6110721	X_6110721_SNP [dm3] X_6216688_SNP [dm6]	T	G	7.836e^-4	0.917	DOWNSTREAM Btd INTERGENIC
2L	3388113	2L_3388113_SNP [dm3] 2L_3388113_SNP [dm6]	T	G	7.853e^-4	0.917	NON_SYNONYMOUS_CODING CG42460 UPSTREAM CR45301 & 1 other
2R	14603539	2R_14603539_SNP [dm3] 2R_18716034_SNP [dm6]	C	T	7.855e^-4	0.917	INTERGENIC
2R	8510278	2R_8510278_SNP [dm3] 2R_12622773_SNP [dm6]	T	A	7.855e^-4	0.917	UTR_3_PRIME Galphaq UPSTREAM CG30054	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	11424790	3R_11424790_SNP [dm3] 3R_15599068_SNP [dm6]	C	T	7.855e^-4	0.917	INTERGENIC
3R	24719741	3R_24719741_SNP [dm3] 3R_28894019_SNP [dm6]	C	A	7.855e^-4	0.917	SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo
X	9974186	X_9974186_SNP [dm3] X_10080153_SNP [dm6]	G	A	7.888e^-4	0.917	SYNONYMOUS_CODING ZAP3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	16302978	2L_16302978_DEL [dm3] 2L_16302978_DEL [dm6]	TGAAGT	T	7.890e^-4	0.917	UPSTREAM c_2_M & 1 other INTERGENIC
X	2662384	X_2662384_INS [dm3] X_2768351_INS [dm6]	G	TT	7.918e^-4	0.917	INTRON kirre
2L	987154	2L_987154_SNP [dm3] 2L_987154_SNP [dm6]	G	C	7.938e^-4	0.917	DOWNSTREAM CR44801 INTERGENIC
2L	16303767	2L_16303767_SNP [dm3] 2L_16303767_SNP [dm6]	C	A	7.977e^-4	0.917	UPSTREAM CG5869 INTRON c_2_M
3R	24720563	3R_24720563_SNP [dm3] 3R_28894841_SNP [dm6]	A	G	8.010e^-4	0.917	SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo
2L	2085255	2L_2085255_SNP [dm3] 2L_2085255_SNP [dm6]	T	G	8.013e^-4	0.917	DOWNSTREAM CR44055 INTRON dpr3
2R	12373092	2R_12373092_SNP [dm3] 2R_16485587_SNP [dm6]	C	T	8.076e^-4	0.917	UPSTREAM CG15712 INTERGENIC
3R	9672999	3R_9672999_SNP [dm3] 3R_13847277_SNP [dm6]	C	T	8.081e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18991671	X_18991671_SNP [dm3] X_19097638_SNP [dm6]	T	C	8.100e^-4	0.917	INTERGENIC
2R	5589364	2R_5589364_SNP [dm3] 2R_9701859_SNP [dm6]	T	G	8.105e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5589374	2R_5589374_SNP [dm3] 2R_9701869_SNP [dm6]	T	A	8.105e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5589488	2R_5589488_SNP [dm3] 2R_9701983_SNP [dm6]	A	T	8.105e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19485682	X_19485682_SNP [dm3] X_19591649_SNP [dm6]	C	G	8.113e^-4	0.917	UPSTREAM CG14205 INTERGENIC
3R	19019789	3R_19019789_SNP [dm3] 3R_23194067_SNP [dm6]	C	T	8.135e^-4	0.917	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	4347687	2L_4347687_SNP [dm3] 2L_4347687_SNP [dm6]	A	T	8.142e^-4	0.917	UPSTREAM CR44698 EXON CR44697	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4347698	2L_4347698_SNP [dm3] 2L_4347698_SNP [dm6]	T	A	8.142e^-4	0.917	UPSTREAM CR44698 EXON CR44697	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14122211	2R_14122211_SNP [dm3] 2R_18234706_SNP [dm6]	A	G	8.183e^-4	0.917	SYNONYMOUS_CODING fj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	14039815	2L_14039815_SNP [dm3] 2L_14039815_SNP [dm6]	C	T	8.212e^-4	0.917	UPSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	6557345	2L_6557345_SNP [dm3] 2L_6557345_SNP [dm6]	T	C	8.218e^-4	0.917	SYNONYMOUS_CODING Osm6 UPSTREAM CoVb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6557426	2L_6557426_SNP [dm3] 2L_6557426_SNP [dm6]	T	C	8.218e^-4	0.917	UTR_5_PRIME Osm6 UPSTREAM CoVb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	12295860	X_12295860_SNP [dm3] X_12401827_SNP [dm6]	G	C	8.228e^-4	0.917	INTERGENIC
X	19724655	X_19724655_SNP [dm3] X_19830622_SNP [dm6]	C	A	8.228e^-4	0.917	UTR_3_PRIME pico DOWNSTREAM pico
2R	13119358	2R_13119358_SNP [dm3] 2R_17231853_SNP [dm6]	A	T	8.231e^-4	0.917	INTRON mbl
2R	13119368	2R_13119368_SNP [dm3] 2R_17231863_SNP [dm6]	G	A	8.231e^-4	0.917	INTRON mbl
2R	13119530	2R_13119530_INS [dm3] 2R_17232025_INS [dm6]	G	GG	8.231e^-4	0.917	INTRON mbl
2R	13130681	2R_13130681_SNP [dm3] 2R_17243176_SNP [dm6]	A	G	8.231e^-4	0.917	INTRON mbl
2R	13130694	2R_13130694_SNP [dm3] 2R_17243189_SNP [dm6]	G	A	8.231e^-4	0.917	INTRON mbl
2R	13133970	2R_13133970_SNP [dm3] 2R_17246465_SNP [dm6]	A	G	8.231e^-4	0.917	UPSTREAM CG18469 DOWNSTREAM CG12699 INTRON mbl
2R	14214017	2R_14214017_SNP [dm3] 2R_18326512_SNP [dm6]	T	C	8.231e^-4	0.917	INTRON sbb
2R	16421929	2R_16421929_SNP [dm3] 2R_20534424_SNP [dm6]	C	T	8.231e^-4	0.917	UTR_5_PRIME CG18067 UPSTREAM CG18067 DOWNSTREAM CG30154
2R	17340621	2R_17340621_SNP [dm3] 2R_21453116_SNP [dm6]	A	G	8.231e^-4	0.917	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2R	17340629	2R_17340629_SNP [dm3] 2R_21453124_SNP [dm6]	T	C	8.231e^-4	0.917	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2R	19317499	2R_19317499_SNP [dm3] 2R_23429976_SNP [dm6]	T	C	8.231e^-4	0.917	INTRON CG9815
2R	19692030	2R_19692030_SNP [dm3] 2R_23804507_SNP [dm6]	T	C	8.231e^-4	0.917	UPSTREAM CG5539 INTRON CG13561
2R	6686720	2R_6686720_SNP [dm3] 2R_10799215_SNP [dm6]	C	A	8.231e^-4	0.917	UPSTREAM CG33144 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11728888	3L_11728888_SNP [dm3] 3L_11735788_SNP [dm6]	C	T	8.231e^-4	0.917	UTR_3_PRIME CG6024
3L	15705670	3L_15705670_SNP [dm3] 3L_15712570_SNP [dm6]	A	C	8.231e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
X	11651998	X_11651998_INS [dm3] X_11757965_INS [dm6]	T	TTAAATTCCCAATTTTGCAT...	8.231e^-4	0.917	INTRON m
X	11652248	X_11652248_SNP [dm3] X_11758215_SNP [dm6]	C	T	8.231e^-4	0.917	INTRON m
X	11652459	X_11652459_SNP [dm3] X_11758426_SNP [dm6]	C	T	8.231e^-4	0.917	INTRON m
X	16818414	X_16818414_SNP [dm3] X_16924381_SNP [dm6]	C	T	8.231e^-4	0.917	UPSTREAM CG4928 INTRON CG4928
X	16818632	X_16818632_SNP [dm3] X_16924599_SNP [dm6]	C	T	8.231e^-4	0.917	UPSTREAM CG4928 INTRON CG4928
X	16818635	X_16818635_SNP [dm3] X_16924602_SNP [dm6]	C	T	8.231e^-4	0.917	UPSTREAM CG4928 INTRON CG4928
X	16819823	X_16819823_SNP [dm3] X_16925790_SNP [dm6]	G	C	8.231e^-4	0.917	INTRON CG4928
3L	20844706	3L_20844706_SNP [dm3] 3L_20851606_SNP [dm6]	C	A	8.252e^-4	0.917	INTRON CG32432
2R	16186587	2R_16186587_SNP [dm3] 2R_20299082_SNP [dm6]	G	T	8.283e^-4	0.917	INTERGENIC
X	10487234	X_10487234_SNP [dm3] X_10593201_SNP [dm6]	G	A	8.283e^-4	0.917	NON_SYNONYMOUS_CODING Hmr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10555481	2L_10555481_SNP [dm3] 2L_10555481_SNP [dm6]	C	T	8.349e^-4	0.917	INTRON Trim9	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2856331	2L_2856331_SNP [dm3] 2L_2856331_SNP [dm6]	C	G	8.349e^-4	0.917	UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9263286	2L_9263286_INS [dm3] 2L_9263286_INS [dm6]	T	TT	8.349e^-4	0.917	UPSTREAM CR45262 INTRON Ggamma30A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9263384	2L_9263384_SNP [dm3] 2L_9263384_SNP [dm6]	C	T	8.349e^-4	0.917	UPSTREAM CR45262 INTRON Ggamma30A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9274987	2L_9274987_SNP [dm3] 2L_9274987_SNP [dm6]	G	T	8.349e^-4	0.917	INTRON Ggamma30A
2L	9542441	2L_9542441_SNP [dm3] 2L_9542441_SNP [dm6]	C	A	8.349e^-4	0.917	UTR_3_PRIME CG17855 UPSTREAM Cpr30B
2R	5830461	2R_5830461_SNP [dm3] 2R_9942956_SNP [dm6]	A	G	8.349e^-4	0.917	UTR_5_PRIME Mef2 INTRON Mef2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	17818277	3L_17818277_SNP [dm3] 3L_17825177_SNP [dm6]	T	C	8.352e^-4	0.917	INTRON Grd
3L	5431564	3L_5431564_INS [dm3] 3L_5438464_INS [dm6]	C	CACTCTC	8.354e^-4	0.917	INTRON CG34391
2R	7766071	2R_7766071_SNP [dm3] 2R_11878566_SNP [dm6]	G	A	8.366e^-4	0.917	SYNONYMOUS_CODING CG13185
2L	9122445	2L_9122445_SNP [dm3] 2L_9122445_SNP [dm6]	C	G	8.390e^-4	0.917	UPSTREAM CR44616 INTERGENIC
X	5206748	X_5206748_SNP [dm3] X_5312715_SNP [dm6]	T	C	8.421e^-4	0.917	SYNONYMOUS_CODING dhd UPSTREAM TrxT & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	9843937	X_9843937_SNP [dm3] X_9949904_SNP [dm6]	A	G	8.421e^-4	0.917	INTERGENIC
3L	3083830	3L_3083830_DEL [dm3] 3L_3083830_DEL [dm6]	CT	C	8.428e^-4	0.917	INTRON CG11486	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	18110534	3L_18110534_SNP [dm3] 3L_18117434_SNP [dm6]	T	G	8.429e^-4	0.917	UTR_3_PRIME CG32195 INTRON CG7341
3L	17095479	3L_17095479_SNP [dm3] 3L_17102379_SNP [dm6]	G	A	8.495e^-4	0.917	INTRON Rbp6
2R	6800160	2R_6800160_SNP [dm3] 2R_10912655_SNP [dm6]	C	T	8.497e^-4	0.917	INTERGENIC
2R	6800165	2R_6800165_SNP [dm3] 2R_10912660_SNP [dm6]	A	T	8.497e^-4	0.917	INTERGENIC
2R	6800168	2R_6800168_SNP [dm3] 2R_10912663_SNP [dm6]	G	A	8.497e^-4	0.917	INTERGENIC
X	20626077	X_20626077_SNP [dm3] X_20755050_SNP [dm6]	A	C	8.534e^-4	0.917	INTERGENIC
3L	9723497	3L_9723497_SNP [dm3] 3L_9730397_SNP [dm6]	C	T	8.575e^-4	0.917	SYNONYMOUS_CODING ATPsyn-b DOWNSTREAM Naa60 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1271368	2L_1271368_SNP [dm3] 2L_1271368_SNP [dm6]	C	T	8.584e^-4	0.917	INTRON robo3
3R	14883149	3R_14883149_SNP [dm3] 3R_19057427_SNP [dm6]	A	T	8.600e^-4	0.917	INTRON cdi
3R	19900754	3R_19900754_SNP [dm3] 3R_24075032_SNP [dm6]	G	A	8.600e^-4	0.917	INTRON 4EHP
3R	19511853	3R_19511853_SNP [dm3] 3R_23686131_SNP [dm6]	C	T	8.633e^-4	0.917	UTR_3_PRIME CG18754 UPSTREAM SPE DOWNSTREAM CG18754
3L	8585351	3L_8585351_SNP [dm3] 3L_8592251_SNP [dm6]	C	G	8.691e^-4	0.917	SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2836195	2L_2836195_SNP [dm3] 2L_2836195_SNP [dm6]	A	G	8.694e^-4	0.917	INTRON CG3119
3L	12596285	3L_12596285_SNP [dm3] 3L_12603185_SNP [dm6]	A	T	8.698e^-4	0.917	INTERGENIC
2R	14496806	2R_14496806_SNP [dm3] 2R_18609301_SNP [dm6]	C	T	8.718e^-4	0.917	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17290700	2R_17290700_DEL [dm3] 2R_21403195_DEL [dm6]	CAAGGACATCCAC...	C	8.721e^-4	0.917	INTRON Sdc
3L	19339440	3L_19339440_SNP [dm3] 3L_19346340_SNP [dm6]	C	A	8.760e^-4	0.917	INTRON CG32206
3R	26363769	3R_26363769_SNP [dm3] 3R_30538047_SNP [dm6]	C	A	8.772e^-4	0.917	UPSTREAM tmod INTRON tmod
3L	4917323	3L_4917323_SNP [dm3] 3L_4917323_SNP [dm6]	T	G	8.776e^-4	0.917	INTRON Rh50
3L	4917324	3L_4917324_SNP [dm3] 3L_4917324_SNP [dm6]	C	G	8.776e^-4	0.917	INTRON Rh50
2L	10244591	2L_10244591_SNP [dm3] 2L_10244591_SNP [dm6]	T	A	8.780e^-4	0.917	INTRON CR44995 & 1 other
2L	769951	2L_769951_SNP [dm3] 2L_769951_SNP [dm6]	T	A	8.780e^-4	0.917	INTERGENIC
2L	769955	2L_769955_SNP [dm3] 2L_769955_SNP [dm6]	A	T	8.780e^-4	0.917	INTERGENIC
2L	4740662	2L_4740662_SNP [dm3] 2L_4740662_SNP [dm6]	G	A	8.782e^-4	0.917	INTRON CG15630
2L	6327662	2L_6327662_SNP [dm3] 2L_6327662_SNP [dm6]	T	A	8.782e^-4	0.917	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	20275600	3L_20275600_DEL [dm3] 3L_20282500_DEL [dm6]	CC	C	8.795e^-4	0.917	INTRON gogo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9158074	3R_9158074_SNP [dm3] 3R_13332352_SNP [dm6]	T	C	8.812e^-4	0.917	UTR_5_PRIME PK2-R2
3L	2865722	3L_2865722_SNP [dm3] 3L_2865722_SNP [dm6]	C	T	8.830e^-4	0.917	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	11669957	3L_11669957_SNP [dm3] 3L_11676857_SNP [dm6]	C	A	8.836e^-4	0.917	INTRON CG32085
3R	11963797	3R_11963797_SNP [dm3] 3R_16138075_SNP [dm6]	T	G	8.839e^-4	0.917	INTRON Sb	TF binding site mE1_TFBS_inv
2R	6047160	2R_6047160_SNP [dm3] 2R_10159655_SNP [dm6]	G	A	8.842e^-4	0.917	UPSTREAM mlt INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6048018	2R_6048018_SNP [dm3] 2R_10160513_SNP [dm6]	T	C	8.842e^-4	0.917	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6048136	2R_6048136_SNP [dm3] 2R_10160631_SNP [dm6]	G	A	8.842e^-4	0.917	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15569398	X_15569398_SNP [dm3] X_15675365_SNP [dm6]	T	A	8.842e^-4	0.917	UPSTREAM CG12708 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	8798398	2L_8798398_SNP [dm3] 2L_8798398_SNP [dm6]	C	G	8.844e^-4	0.917	INTERGENIC
3L	7795211	3L_7795211_DEL [dm3] 3L_7802111_DEL [dm6]	TATAT	T	8.890e^-4	0.917	INTRON CG32369
2L	2026696	2L_2026696_SNP [dm3] 2L_2026696_SNP [dm6]	T	G	8.927e^-4	0.917	INTRON CG4238	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11678838	3L_11678838_SNP [dm3] 3L_11685738_SNP [dm6]	G	T	8.927e^-4	0.917	INTRON Sug	TF binding site mE1_TFBS_eve
3L	9319286	3L_9319286_SNP [dm3] 3L_9326186_SNP [dm6]	G	C	8.927e^-4	0.917	INTERGENIC
2L	16302760	2L_16302760_SNP [dm3] 2L_16302760_SNP [dm6]	A	G	8.931e^-4	0.917	UPSTREAM c_2_M DOWNSTREAM CG17328 INTRON CG5869	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
2L	16302783	2L_16302783_SNP [dm3] 2L_16302783_SNP [dm6]	T	A	8.931e^-4	0.917	START_GAINED CG5869 UTR_5_PRIME CG5869 UPSTREAM c_2_M	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
2R	7612908	2R_7612908_SNP [dm3] 2R_11725403_SNP [dm6]	G	A	9.005e^-4	0.917	SYNONYMOUS_CODING pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	17050734	2R_17050734_SNP [dm3] 2R_21163229_SNP [dm6]	T	A	9.009e^-4	0.917	INTRON CG4266
2R	17050735	2R_17050735_SNP [dm3] 2R_21163230_SNP [dm6]	T	A	9.009e^-4	0.917	INTRON CG4266
3L	14077012	3L_14077012_DEL [dm3] 3L_14083912_DEL [dm6]	TATTGT	C	9.015e^-4	0.917	DOWNSTREAM btl INTRON CG8100
3L	14077038	3L_14077038_SNP [dm3] 3L_14083938_SNP [dm6]	T	C	9.015e^-4	0.917	DOWNSTREAM btl INTRON CG8100
3L	3009114	3L_3009114_SNP [dm3] 3L_3009114_SNP [dm6]	T	C	9.015e^-4	0.917	SYNONYMOUS_CODING FMRFaR	TF binding site mE1_TFBS_cad
X	5575745	X_5575745_SNP [dm3] X_5681712_SNP [dm6]	T	C	9.015e^-4	0.917	SYNONYMOUS_CODING Gr5a EXON CR44958	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5575792	X_5575792_SNP [dm3] X_5681759_SNP [dm6]	C	T	9.015e^-4	0.917	SPLICE_SITE_REGION Gr5a INTRON Gr5a EXON CR44958	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5575840	X_5575840_SNP [dm3] X_5681807_SNP [dm6]	T	C	9.015e^-4	0.917	INTRON Gr5a EXON CR44958	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11757823	2R_11757823_SNP [dm3] 2R_15870318_SNP [dm6]	C	T	9.020e^-4	0.917	UTR_3_PRIME sli
3R	10838880	3R_10838880_SNP [dm3] 3R_15013158_SNP [dm6]	C	T	9.020e^-4	0.917	INTERGENIC
3R	10838912	3R_10838912_SNP [dm3] 3R_15013190_SNP [dm6]	G	T	9.020e^-4	0.917	INTERGENIC
3R	10838913	3R_10838913_SNP [dm3] 3R_15013191_SNP [dm6]	G	T	9.020e^-4	0.917	INTERGENIC
3R	15202691	3R_15202691_SNP [dm3] 3R_19376969_SNP [dm6]	T	G	9.020e^-4	0.917	NON_SYNONYMOUS_CODING CG31245 UPSTREAM CG31404 INTRON Ino80
3R	21751179	3R_21751179_SNP [dm3] 3R_25925457_SNP [dm6]	C	A	9.020e^-4	0.917	INTRON CCAP-R
3R	24688303	3R_24688303_SNP [dm3] 3R_28862581_SNP [dm6]	A	T	9.020e^-4	0.917	INTRON spg	TF binding site BDTNP1_TFBS_dl
X	6515717	X_6515717_SNP [dm3] X_6621684_SNP [dm6]	C	A	9.020e^-4	0.917	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6515720	X_6515720_SNP [dm3] X_6621687_SNP [dm6]	A	T	9.020e^-4	0.917	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12967664	3R_12967664_SNP [dm3] 3R_17141942_SNP [dm6]	G	T	9.033e^-4	0.917	SYNONYMOUS_CODING TwdlW DOWNSTREAM CG5265	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10614692	3R_10614692_SNP [dm3] 3R_14788970_SNP [dm6]	T	A	9.042e^-4	0.917	SPLICE_SITE_REGION jvl INTRON jvl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12569491	3L_12569491_DEL [dm3] 3L_12576391_DEL [dm6]	TT	T	9.049e^-4	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
2R	12346550	2R_12346550_SNP [dm3] 2R_16459045_SNP [dm6]	A	T	9.051e^-4	0.917	INTERGENIC
3L	11695673	3L_11695673_SNP [dm3] 3L_11702573_SNP [dm6]	T	C	9.072e^-4	0.917	INTRON CG11658
2L	11498247	2L_11498247_SNP [dm3] 2L_11498247_SNP [dm6]	C	T	9.109e^-4	0.917	INTRON CG6488	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5431562	3L_5431562_SNP [dm3] 3L_5438462_SNP [dm6]	C	T	9.133e^-4	0.917	INTRON CG34391
3L	19234418	3L_19234418_SNP [dm3] 3L_19241318_SNP [dm6]	C	A	9.163e^-4	0.917	INTERGENIC
3R	14182438	3R_14182438_SNP [dm3] 3R_18356716_SNP [dm6]	C	A	9.164e^-4	0.917	INTRON CG15803
3L	1542723	3L_1542723_SNP [dm3] 3L_1542723_SNP [dm6]	A	C	9.202e^-4	0.917	SYNONYMOUS_CODING CG7852 UTR_3_PRIME CG7852

By genomic position
Variant impact
Gene name

MedianLS phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results