DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.832e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.09053

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.4771	0.0647

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1145 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	11111178	X_11111178_SNP [dm3] X_11217145_SNP [dm6]	T	C	5.786e^-7	0.713	INTERGENIC
2R	8911925	2R_8911925_SNP [dm3] 2R_13024420_SNP [dm6]	A	G	1.760e^-6	0.713	INTERGENIC
3L	18492202	3L_18492202_SNP [dm3] 3L_18499102_SNP [dm6]	G	A	1.760e^-6	0.713	INTRON AstC-R2
3L	14527380	3L_14527380_SNP [dm3] 3L_14534280_SNP [dm6]	G	C	1.902e^-6	0.713	INTRON bbg	TF binding site mE1_TFBS_Trl
2R	5427749	2R_5427749_SNP [dm3] 2R_9540244_SNP [dm6]	G	A	2.158e^-6	0.713	UTR_3_PRIME brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11111129	X_11111129_SNP [dm3] X_11217096_SNP [dm6]	T	C	3.131e^-6	0.782	INTERGENIC
3L	9620785	3L_9620785_SNP [dm3] 3L_9627685_SNP [dm6]	A	G	3.315e^-6	0.782	SPLICE_SITE_REGION Or67b UPSTREAM CG8336 DOWNSTREAM CG3335 INTRON Or67b
3L	8913789	3L_8913789_SNP [dm3] 3L_8920689_SNP [dm6]	A	T	5.928e^-6	0.899	INTRON Tsp66E
2L	21916487	2L_21916487_SNP [dm3] 2L_21916487_SNP [dm6]	T	A	6.042e^-6	0.899	NON_SYNONYMOUS_CODING CG11634
2R	11844909	2R_11844909_SNP [dm3] 2R_15957404_SNP [dm6]	A	G	6.792e^-6	0.899	UPSTREAM Strn-Mlck DOWNSTREAM CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	11844926	2R_11844926_SNP [dm3] 2R_15957421_SNP [dm6]	T	C	6.792e^-6	0.899	UPSTREAM Strn-Mlck DOWNSTREAM CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	5444062	2R_5444062_SNP [dm3] 2R_9556557_SNP [dm6]	T	G	6.792e^-6	0.899	INTERGENIC
2L	4794246	2L_4794246_SNP [dm3] 2L_4794246_SNP [dm6]	A	C	7.075e^-6	0.899	UPSTREAM CG3294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7956155	3L_7956155_SNP [dm3] 3L_7963055_SNP [dm6]	C	A	7.774e^-6	0.9	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17436228	2R_17436228_SNP [dm3] 2R_21548723_SNP [dm6]	C	A	8.686e^-6	0.9	INTRON Egfr	TF binding site BDTNP1_TFBS_dl
2R	9444999	2R_9444999_SNP [dm3] 2R_13557494_SNP [dm6]	T	C	9.038e^-6	0.9	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	22848917	3R_22848917_SNP [dm3] 3R_27023195_SNP [dm6]	C	T	1.042e^-5	0.9	UTR_5_PRIME CG6277 INTRON RYa-R
3R	22848918	3R_22848918_SNP [dm3] 3R_27023196_SNP [dm6]	G	A	1.042e^-5	0.9	START_GAINED CG6277 UTR_5_PRIME CG6277 INTRON RYa-R
2R	8911929	2R_8911929_SNP [dm3] 2R_13024424_SNP [dm6]	C	A	1.198e^-5	0.9	INTERGENIC
3R	15327713	3R_15327713_SNP [dm3] 3R_19501991_SNP [dm6]	G	T	1.198e^-5	0.9	INTRON Dys
3R	18328932	3R_18328932_SNP [dm3] 3R_22503210_SNP [dm6]	T	A	1.198e^-5	0.9	INTRON Octbeta1R
3R	25265193	3R_25265193_SNP [dm3] 3R_29439471_SNP [dm6]	A	T	1.198e^-5	0.9	INTRON Ptp99A
2R	5427731	2R_5427731_SNP [dm3] 2R_9540226_SNP [dm6]	G	T	1.364e^-5	0.903	UTR_3_PRIME brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7403149	2R_7403149_SNP [dm3] 2R_11515644_SNP [dm6]	C	T	1.496e^-5	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13941266	3L_13941266_SNP [dm3] 3L_13948166_SNP [dm6]	G	T	1.496e^-5	0.903	INTRON CG32137
3L	8124936	3L_8124936_SNP [dm3] 3L_8131836_SNP [dm6]	T	C	1.496e^-5	0.903	SYNONYMOUS_CODING CG7504 DOWNSTREAM CdsA
3L	8124987	3L_8124987_SNP [dm3] 3L_8131887_SNP [dm6]	T	A	1.496e^-5	0.903	NON_SYNONYMOUS_CODING CG7504 DOWNSTREAM CdsA
2R	19973851	2R_19973851_SNP [dm3] 2R_24086328_SNP [dm6]	G	C	1.600e^-5	0.903	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	4135877	2R_4135877_SNP [dm3] 2R_8248372_SNP [dm6]	A	C	1.637e^-5	0.903	DOWNSTREAM CG44439 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	4978489	3L_4978489_SNP [dm3] 3L_4978489_SNP [dm6]	A	G	1.879e^-5	0.903	INTRON Con
3R	18704146	3R_18704146_SNP [dm3] 3R_22878424_SNP [dm6]	T	G	2.020e^-5	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8496071	2L_8496071_SNP [dm3] 2L_8496071_SNP [dm6]	A	G	2.066e^-5	0.903	SYNONYMOUS_CODING Bace INTRON Dh31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8497308	2L_8497308_SNP [dm3] 2L_8497308_SNP [dm6]	C	T	2.066e^-5	0.903	INTRON Dh31
2L	8497327	2L_8497327_DEL [dm3] 2L_8497327_DEL [dm6]	AA	A	2.066e^-5	0.903	INTRON Dh31
2R	14268854	2R_14268854_SNP [dm3] 2R_18381349_SNP [dm6]	T	C	2.099e^-5	0.903	DOWNSTREAM CG43202 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7189211	2L_7189211_SNP [dm3] 2L_7189211_SNP [dm6]	G	C	2.257e^-5	0.903	INTRON CG4496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10520198	3L_10520198_SNP [dm3] 3L_10527098_SNP [dm6]	G	A	2.355e^-5	0.903	INTRON A2bp1
2R	5427803	2R_5427803_DEL [dm3] 2R_9540298_DEL [dm6]	TTATG	T	2.371e^-5	0.903	UTR_3_PRIME brp	TF binding site BDTNP1_TFBS_dl
2R	11415155	2R_11415155_SNP [dm3] 2R_15527650_SNP [dm6]	C	T	2.516e^-5	0.903	SYNONYMOUS_CODING Khc-73	TF binding site BDTNP1_TFBS_dl
2R	11416422	2R_11416422_SNP [dm3] 2R_15528917_SNP [dm6]	T	C	2.516e^-5	0.903	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16257560	3L_16257560_SNP [dm3] 3L_16264460_SNP [dm6]	G	T	2.523e^-5	0.903	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	5820932	3L_5820932_SNP [dm3] 3L_5827832_SNP [dm6]	A	T	2.594e^-5	0.903	INTRON vn
2R	16988075	2R_16988075_SNP [dm3] 2R_21100570_SNP [dm6]	A	G	2.703e^-5	0.903	SYNONYMOUS_CODING CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
3L	13251642	3L_13251642_SNP [dm3] 3L_13258542_SNP [dm6]	G	C	2.742e^-5	0.903	INTRON caps
X	14829020	X_14829020_SNP [dm3] X_14934987_SNP [dm6]	G	C	2.754e^-5	0.903	SYNONYMOUS_CODING pdgy	TF binding site mE1_TFBS_sens
2L	6567218	2L_6567218_SNP [dm3] 2L_6567218_SNP [dm6]	T	C	3.041e^-5	0.903	INTERGENIC
3R	13073632	3R_13073632_DEL [dm3] 3R_17247910_DEL [dm6]	TGCTGCC	T	3.060e^-5	0.903	UTR_5_PRIME beat-IIb UPSTREAM beat-IIb
3L	3297604	3L_3297604_SNP [dm3] 3L_3297604_SNP [dm6]	C	T	3.152e^-5	0.903	SYNONYMOUS_CODING CG12009
3L	3783026	3L_3783026_SNP [dm3] 3L_3783026_SNP [dm6]	C	A	3.188e^-5	0.903	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2R	6228370	2R_6228370_SNP [dm3] 2R_10340865_SNP [dm6]	C	T	3.315e^-5	0.903	INTRON CG42732
3L	4978443	3L_4978443_SNP [dm3] 3L_4978443_SNP [dm6]	T	G	3.472e^-5	0.903	INTRON Con
3R	24631767	3R_24631767_INS [dm3] 3R_28806045_INS [dm6]	T	TAATGTTTTT	3.560e^-5	0.903	UPSTREAM CheB98a INTERGENIC
3L	2431623	3L_2431623_SNP [dm3] 3L_2431623_SNP [dm6]	C	T	3.681e^-5	0.903	INTRON CG45186
3R	22746590	3R_22746590_SNP [dm3] 3R_26920868_SNP [dm6]	T	G	3.681e^-5	0.903	INTRON sda
3R	20823341	3R_20823341_SNP [dm3] 3R_24997619_SNP [dm6]	G	A	3.707e^-5	0.903	INTRON tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20391131	X_20391131_SNP [dm3] X_20520104_SNP [dm6]	T	G	3.707e^-5	0.903	INTRON Tak1
3R	22894759	3R_22894759_SNP [dm3] 3R_27069037_SNP [dm6]	T	C	3.707e^-5	0.903	INTRON spz
2R	6233279	2R_6233279_SNP [dm3] 2R_10345774_SNP [dm6]	C	T	3.742e^-5	0.903	INTRON CG42732
2R	6233283	2R_6233283_SNP [dm3] 2R_10345778_SNP [dm6]	C	A	3.742e^-5	0.903	INTRON CG42732
3R	26538524	3R_26538524_SNP [dm3] 3R_30712802_SNP [dm6]	C	T	3.812e^-5	0.903	INTERGENIC
X	12380878	X_12380878_SNP [dm3] X_12486845_SNP [dm6]	C	A	3.955e^-5	0.903	UPSTREAM Cpr11A INTERGENIC
3L	2431992	3L_2431992_SNP [dm3] 3L_2431992_SNP [dm6]	G	A	4.073e^-5	0.903	INTRON CG45186
3L	2619676	3L_2619676_SNP [dm3] 3L_2619676_SNP [dm6]	C	T	4.073e^-5	0.903	INTRON Pxn
3L	3453265	3L_3453265_SNP [dm3] 3L_3453265_SNP [dm6]	G	T	4.073e^-5	0.903	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2835654	3L_2835654_SNP [dm3] 3L_2835654_SNP [dm6]	T	A	4.116e^-5	0.903	INTRON CG43444
X	20340275	X_20340275_SNP [dm3] X_20469248_SNP [dm6]	C	T	4.136e^-5	0.903	NON_SYNONYMOUS_CODING GstT3 DOWNSTREAM RhoGAP19D	TF binding site mE1_TFBS_HSA
3R	17812630	3R_17812630_SNP [dm3] 3R_21986908_SNP [dm6]	T	C	4.432e^-5	0.903	INTRON Eip93F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3080579	3L_3080579_DEL [dm3] 3L_3080579_DEL [dm6]	ACGCGT	A	4.447e^-5	0.903	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	3080587	3L_3080587_SNP [dm3] 3L_3080587_SNP [dm6]	G	T	4.447e^-5	0.903	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	4978723	3L_4978723_SNP [dm3] 3L_4978723_SNP [dm6]	A	C	4.447e^-5	0.903	INTRON Con
3R	9839233	3R_9839233_SNP [dm3] 3R_14013511_SNP [dm6]	A	C	4.622e^-5	0.903	INTRON rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6644230	3L_6644230_SNP [dm3] 3L_6651130_SNP [dm6]	G	C	4.823e^-5	0.903	INTERGENIC
2L	6140895	2L_6140895_SNP [dm3] 2L_6140895_SNP [dm6]	C	T	4.831e^-5	0.903	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6140901	2L_6140901_SNP [dm3] 2L_6140901_SNP [dm6]	G	T	4.831e^-5	0.903	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	770261	2L_770261_SNP [dm3] 2L_770261_SNP [dm6]	C	T	4.876e^-5	0.903	INTERGENIC
3R	22727094	3R_22727094_SNP [dm3] 3R_26901372_SNP [dm6]	G	C	4.925e^-5	0.903	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	3616586	3L_3616586_SNP [dm3] 3L_3616586_SNP [dm6]	A	G	4.939e^-5	0.903	UTR_3_PRIME CG10357	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	814212	2L_814212_SNP [dm3] 2L_814212_SNP [dm6]	T	G	5.264e^-5	0.903	DOWNSTREAM Dbp21E2 INTRON Saf6
2R	11653566	2R_11653566_SNP [dm3] 2R_15766061_SNP [dm6]	T	G	5.301e^-5	0.903	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9445019	2R_9445019_SNP [dm3] 2R_13557514_SNP [dm6]	C	T	5.422e^-5	0.903	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	11656084	X_11656084_SNP [dm3] X_11762051_SNP [dm6]	G	T	5.430e^-5	0.903	INTRON m
2R	19905647	2R_19905647_SNP [dm3] 2R_24018124_SNP [dm6]	A	T	5.499e^-5	0.903	UPSTREAM CG4324 INTRON CG3121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	5648610	2R_5648610_SNP [dm3] 2R_9761105_SNP [dm6]	T	A	5.713e^-5	0.903	INTRON trpl
2R	5648613	2R_5648613_SNP [dm3] 2R_9761108_SNP [dm6]	A	T	5.713e^-5	0.903	INTRON trpl
3R	921448	3R_921448_SNP [dm3] 3R_5095726_SNP [dm6]	A	G	5.993e^-5	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	11419011	2R_11419011_SNP [dm3] 2R_15531506_SNP [dm6]	A	G	6.054e^-5	0.903	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13907150	2R_13907150_SNP [dm3] 2R_18019645_SNP [dm6]	A	C	6.080e^-5	0.903	SYNONYMOUS_CODING CG5084 UPSTREAM CG10910	TF binding site mE1_TFBS_cad
2L	10322880	2L_10322880_SNP [dm3] 2L_10322880_SNP [dm6]	T	C	6.184e^-5	0.903	UPSTREAM CG4995 INTRON CG5381 & 1 other
3R	22890521	3R_22890521_DEL [dm3] 3R_27064799_DEL [dm6]	AA	C	6.200e^-5	0.903	UPSTREAM Nep5 & 1 other DOWNSTREAM spz INTERGENIC
2R	17025724	2R_17025724_SNP [dm3] 2R_21138219_SNP [dm6]	G	C	6.617e^-5	0.903	SPLICE_SITE_REGION Magi INTRON Magi	TF binding site mE1_TFBS_chinmo
2L	6566375	2L_6566375_SNP [dm3] 2L_6566375_SNP [dm6]	G	C	6.618e^-5	0.903	UPSTREAM CG13766 INTERGENIC
3R	16328620	3R_16328620_SNP [dm3] 3R_20502898_SNP [dm6]	G	A	6.753e^-5	0.903	UPSTREAM Dic2 DOWNSTREAM MtnB INTERGENIC
3R	25321020	3R_25321020_SNP [dm3] 3R_29495298_SNP [dm6]	G	T	6.754e^-5	0.903	INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	18813149	2R_18813149_SNP [dm3] 2R_22925626_SNP [dm6]	G	A	6.823e^-5	0.903	UPSTREAM Nup214 & 1 other INTRON CG42678	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18813162	2R_18813162_SNP [dm3] 2R_22925639_SNP [dm6]	G	A	6.823e^-5	0.903	UPSTREAM Nup214 & 1 other INTRON CG42678	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18813170	2R_18813170_SNP [dm3] 2R_22925647_SNP [dm6]	C	A	6.823e^-5	0.903	UPSTREAM Nup214 & 1 other INTRON CG42678	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14993536	3L_14993536_INS [dm3] 3L_15000436_INS [dm6]	A	AAAA	6.823e^-5	0.903	UPSTREAM mRpL39 DOWNSTREAM Reck INTRON Prosbeta2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
X	2923226	X_2923226_SNP [dm3] X_3029193_SNP [dm6]	G	T	6.823e^-5	0.903	INTRON kirre
3L	580741	3L_580741_SNP [dm3] 3L_580741_SNP [dm6]	G	C	6.877e^-5	0.903	UTR_3_PRIME hipk UPSTREAM Ppm1
3R	11963755	3R_11963755_SNP [dm3] 3R_16138033_SNP [dm6]	G	C	6.877e^-5	0.903	INTRON Sb	TF binding site mE1_TFBS_inv
3R	11963785	3R_11963785_SNP [dm3] 3R_16138063_SNP [dm6]	T	C	6.877e^-5	0.903	INTRON Sb	TF binding site mE1_TFBS_inv
3R	11963825	3R_11963825_INS [dm3] 3R_16138103_INS [dm6]	G	GAATG	6.877e^-5	0.903	INTRON Sb	TF binding site mE1_TFBS_inv
2R	11845329	2R_11845329_SNP [dm3] 2R_15957824_SNP [dm6]	C	T	6.931e^-5	0.903	SYNONYMOUS_CODING Strn-Mlck UPSTREAM Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	770067	2L_770067_INS [dm3] 2L_770067_INS [dm6]	T	TTACTAT	6.938e^-5	0.903	INTERGENIC
2L	770213	2L_770213_SNP [dm3] 2L_770213_SNP [dm6]	A	G	6.938e^-5	0.903	INTERGENIC
2L	770255	2L_770255_SNP [dm3] 2L_770255_SNP [dm6]	T	C	6.938e^-5	0.903	INTERGENIC
2L	770287	2L_770287_SNP [dm3] 2L_770287_SNP [dm6]	G	A	6.938e^-5	0.903	INTERGENIC
3R	11400179	3R_11400179_SNP [dm3] 3R_15574457_SNP [dm6]	C	T	7.039e^-5	0.903	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	14939481	2R_14939481_SNP [dm3] 2R_19051976_SNP [dm6]	C	T	7.087e^-5	0.903	INTERGENIC
X	6388208	X_6388208_SNP [dm3] X_6494175_SNP [dm6]	G	A	7.087e^-5	0.903	INTRON CG42340
2L	6559264	2L_6559264_INS [dm3] 2L_6559264_INS [dm6]	A	AT	7.159e^-5	0.903	UTR_3_PRIME CoVb UPSTREAM CG11043 DOWNSTREAM CG9596 & 1 other
2L	6747667	2L_6747667_SNP [dm3] 2L_6747667_SNP [dm6]	G	A	7.323e^-5	0.903	SYNONYMOUS_CODING CG44271 INTRON CG11221
2L	6747691	2L_6747691_SNP [dm3] 2L_6747691_SNP [dm6]	G	C	7.323e^-5	0.903	NON_SYNONYMOUS_CODING CG44271 INTRON CG11221
2L	8638175	2L_8638175_SNP [dm3] 2L_8638175_SNP [dm6]	A	G	7.323e^-5	0.903	INTRON Sema-1a
3L	10841019	3L_10841019_SNP [dm3] 3L_10847919_SNP [dm6]	T	A	7.354e^-5	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11845054	2R_11845054_SNP [dm3] 2R_15957549_SNP [dm6]	A	C	7.436e^-5	0.903	UPSTREAM Strn-Mlck DOWNSTREAM CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	12375429	2R_12375429_SNP [dm3] 2R_16487924_SNP [dm6]	A	C	7.436e^-5	0.903	UPSTREAM CG33459 DOWNSTREAM CG33458 INTERGENIC
3L	19103388	3L_19103388_SNP [dm3] 3L_19110288_SNP [dm6]	T	C	7.464e^-5	0.903	SYNONYMOUS_CODING CG14082
3R	12331869	3R_12331869_SNP [dm3] 3R_16506147_SNP [dm6]	G	A	7.569e^-5	0.903	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	866873	3L_866873_SNP [dm3] 3L_866873_SNP [dm6]	T	A	7.719e^-5	0.903	INTRON CG12502	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13334423	3L_13334423_DEL [dm3] 3L_13341323_DEL [dm6]	AACTGCCTCGCTTTA...	A	7.724e^-5	0.903	INTERGENIC
3R	11424771	3R_11424771_SNP [dm3] 3R_15599049_SNP [dm6]	A	T	7.815e^-5	0.903	INTERGENIC
3R	23129030	3R_23129030_SNP [dm3] 3R_27303308_SNP [dm6]	A	T	7.870e^-5	0.903	SYNONYMOUS_CODING CG3339
3R	9695040	3R_9695040_SNP [dm3] 3R_13869318_SNP [dm6]	A	T	7.870e^-5	0.903	INTRON E5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7063426	2L_7063426_SNP [dm3] 2L_7063426_SNP [dm6]	A	T	8.166e^-5	0.903	UTR_3_PRIME Mnn1 UPSTREAM Sem1 DOWNSTREAM Mnn1	TF binding site mE1_TFBS_cnc
2L	18234409	2L_18234409_SNP [dm3] 2L_18234409_SNP [dm6]	C	A	8.192e^-5	0.903	INTRON CG42750
2R	14148331	2R_14148331_SNP [dm3] 2R_18260826_SNP [dm6]	A	C	8.316e^-5	0.903	INTERGENIC
X	18873449	X_18873449_SNP [dm3] X_18979416_SNP [dm6]	G	T	8.442e^-5	0.903	INTRON CG43759	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8793045	2L_8793045_SNP [dm3] 2L_8793045_SNP [dm6]	T	G	8.516e^-5	0.903	INTERGENIC
2R	14148260	2R_14148260_SNP [dm3] 2R_18260755_SNP [dm6]	G	A	8.722e^-5	0.903	INTERGENIC
2R	14148351	2R_14148351_SNP [dm3] 2R_18260846_SNP [dm6]	C	G	8.722e^-5	0.903	INTERGENIC
3L	6812342	3L_6812342_SNP [dm3] 3L_6819242_SNP [dm6]	C	G	8.722e^-5	0.903	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	6812351	3L_6812351_SNP [dm3] 3L_6819251_SNP [dm6]	T	G	8.722e^-5	0.903	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	6812354	3L_6812354_SNP [dm3] 3L_6819254_SNP [dm6]	G	T	8.722e^-5	0.903	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	6812388	3L_6812388_SNP [dm3] 3L_6819288_SNP [dm6]	A	T	8.722e^-5	0.903	INTERGENIC
3L	6812452	3L_6812452_INS [dm3] 3L_6819352_INS [dm6]	A	AA	8.722e^-5	0.903	INTERGENIC
3L	6812457	3L_6812457_SNP [dm3] 3L_6819357_SNP [dm6]	G	T	8.722e^-5	0.903	INTERGENIC
3L	6812472	3L_6812472_SNP [dm3] 3L_6819372_SNP [dm6]	C	T	8.722e^-5	0.903	INTERGENIC
2R	17434622	2R_17434622_SNP [dm3] 2R_21547117_SNP [dm6]	T	G	8.821e^-5	0.903	START_GAINED Egfr UTR_5_PRIME Egfr INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	2901821	2R_2901821_SNP [dm3] 2R_7014316_SNP [dm6]	T	C	8.821e^-5	0.903	INTRON Tsp42Ee	TF binding site BDTNP1_TFBS_twi
2L	7071872	2L_7071872_INS [dm3] 2L_7071872_INS [dm6]	G	GG	8.884e^-5	0.903	INTRON Pvf2
3R	25329046	3R_25329046_INS [dm3] 3R_29503324_INS [dm6]	C	CCCGCGAGTGT...	9.138e^-5	0.903	UTR_5_PRIME Trc8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18578065	3L_18578065_SNP [dm3] 3L_18584965_SNP [dm6]	A	G	9.217e^-5	0.903	DOWNSTREAM CR45435 INTERGENIC
2R	11416270	2R_11416270_SNP [dm3] 2R_15528765_SNP [dm6]	G	T	9.225e^-5	0.903	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11691832	X_11691832_INS [dm3] X_11797799_INS [dm6]	G	GA	9.403e^-5	0.903	UTR_3_PRIME CkIIbeta DOWNSTREAM CkIIbeta INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15673321	3L_15673321_SNP [dm3] 3L_15680221_SNP [dm6]	A	C	9.494e^-5	0.903	NON_SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA
3L	15673342	3L_15673342_SNP [dm3] 3L_15680242_SNP [dm6]	C	T	9.494e^-5	0.903	NON_SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15673346	3L_15673346_SNP [dm3] 3L_15680246_SNP [dm6]	C	G	9.494e^-5	0.903	NON_SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15673355	3L_15673355_SNP [dm3] 3L_15680255_SNP [dm6]	G	A	9.494e^-5	0.903	NON_SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6259241	2L_6259241_SNP [dm3] 2L_6259241_SNP [dm6]	G	A	9.540e^-5	0.903	INTRON Ddr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12050524	3L_12050524_SNP [dm3] 3L_12057424_SNP [dm6]	T	A	9.540e^-5	0.903	UPSTREAM rols INTRON rols	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9518803	2R_9518803_SNP [dm3] 2R_13631298_SNP [dm6]	T	C	9.596e^-5	0.903	INTRON fas
2R	12023688	2R_12023688_SNP [dm3] 2R_16136183_SNP [dm6]	A	G	9.615e^-5	0.903	SPLICE_SITE_REGION spin INTRON spin
2R	12023760	2R_12023760_SNP [dm3] 2R_16136255_SNP [dm6]	A	T	9.615e^-5	0.903	SYNONYMOUS_CODING spin UTR_3_PRIME spin
3L	4978279	3L_4978279_SNP [dm3] 3L_4978279_SNP [dm6]	C	T	9.732e^-5	0.903	INTRON Con
3L	1611813	3L_1611813_SNP [dm3] 3L_1611813_SNP [dm6]	G	T	1.013e^-4	0.903	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17599721	2R_17599721_SNP [dm3] 2R_21712216_SNP [dm6]	T	G	1.017e^-4	0.903	UPSTREAM CG30403 INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18353347	2R_18353347_SNP [dm3] 2R_22465842_SNP [dm6]	A	G	1.025e^-4	0.903	INTRON CG10384
2L	18230382	2L_18230382_SNP [dm3] 2L_18230382_SNP [dm6]	A	G	1.061e^-4	0.903	INTRON CG42750	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14504103	X_14504103_SNP [dm3] X_14610070_SNP [dm6]	G	A	1.082e^-4	0.903	INTRON NetA
2R	16567768	2R_16567768_SNP [dm3] 2R_20680263_SNP [dm6]	C	T	1.099e^-4	0.903	INTERGENIC
3L	14334561	3L_14334561_SNP [dm3] 3L_14341461_SNP [dm6]	T	A	1.102e^-4	0.903	INTRON fz	TF binding site BDTNP1_TFBS_dl
3L	5658856	3L_5658856_SNP [dm3] 3L_5665756_SNP [dm6]	T	C	1.102e^-4	0.903	UTR_5_PRIME sif INTRON sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8805340	3L_8805340_SNP [dm3] 3L_8812240_SNP [dm6]	T	A	1.102e^-4	0.903	DOWNSTREAM CG13309 INTERGENIC
2R	11423960	2R_11423960_SNP [dm3] 2R_15536455_SNP [dm6]	T	A	1.113e^-4	0.903	INTRON CG30471
3L	6812407	3L_6812407_SNP [dm3] 3L_6819307_SNP [dm6]	A	T	1.124e^-4	0.903	INTERGENIC
3R	9223321	3R_9223321_SNP [dm3] 3R_13397599_SNP [dm6]	G	A	1.131e^-4	0.903	UPSTREAM CG14377 & 1 other DOWNSTREAM CG9796 INTERGENIC
2L	5923065	2L_5923065_SNP [dm3] 2L_5923065_SNP [dm6]	A	G	1.138e^-4	0.903	UTR_3_PRIME CG9016 DOWNSTREAM bchs
3R	3625791	3R_3625791_SNP [dm3] 3R_7800069_SNP [dm6]	A	G	1.138e^-4	0.903	INTRON CG3014
2R	12254748	2R_12254748_SNP [dm3] 2R_16367243_SNP [dm6]	G	A	1.153e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14868271	3L_14868271_SNP [dm3] 3L_14875171_SNP [dm6]	A	T	1.153e^-4	0.903	INTRON CG17839
3L	9046291	3L_9046291_SNP [dm3] 3L_9053191_SNP [dm6]	C	T	1.155e^-4	0.903	INTRON Argk	TF binding site mE1_TFBS_HSA
3L	9255389	3L_9255389_SNP [dm3] 3L_9262289_SNP [dm6]	C	T	1.155e^-4	0.903	INTRON GluRIB	TF binding site BDTNP1_TFBS_twi
X	14072110	X_14072110_SNP [dm3] X_14178077_SNP [dm6]	T	A	1.155e^-4	0.903	UTR_3_PRIME CG11581 DOWNSTREAM CG11581
3L	4976908	3L_4976908_SNP [dm3] 3L_4976908_SNP [dm6]	G	C	1.184e^-4	0.903	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	10189200	3R_10189200_SNP [dm3] 3R_14363478_SNP [dm6]	G	A	1.196e^-4	0.903	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3990901	3R_3990901_SNP [dm3] 3R_8165179_SNP [dm6]	C	G	1.196e^-4	0.903	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2687919	2L_2687919_DEL [dm3] 2L_2687919_DEL [dm6]	GG	G	1.200e^-4	0.903	INTRON CG31690
3L	5992659	3L_5992659_SNP [dm3] 3L_5999559_SNP [dm6]	G	A	1.208e^-4	0.903	INTRON PVRAP
3R	23211097	3R_23211097_SNP [dm3] 3R_27385375_SNP [dm6]	T	C	1.216e^-4	0.903	INTRON side
2L	3750983	2L_3750983_SNP [dm3] 2L_3750983_SNP [dm6]	C	G	1.220e^-4	0.903	INTRON CG10019
2L	10322860	2L_10322860_SNP [dm3] 2L_10322860_SNP [dm6]	A	G	1.225e^-4	0.903	UPSTREAM CG4995 INTRON CG5381 & 1 other
3L	6812461	3L_6812461_SNP [dm3] 3L_6819361_SNP [dm6]	A	G	1.241e^-4	0.903	INTERGENIC
X	9832299	X_9832299_SNP [dm3] X_9938266_SNP [dm6]	G	T	1.260e^-4	0.903	INTERGENIC
X	9832310	X_9832310_SNP [dm3] X_9938277_SNP [dm6]	G	C	1.260e^-4	0.903	INTERGENIC
X	9832314	X_9832314_SNP [dm3] X_9938281_SNP [dm6]	G	T	1.260e^-4	0.903	INTERGENIC
3L	2651543	3L_2651543_SNP [dm3] 3L_2651543_SNP [dm6]	C	T	1.273e^-4	0.903	SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
3L	2651573	3L_2651573_SNP [dm3] 3L_2651573_SNP [dm6]	C	G	1.273e^-4	0.903	NON_SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
3L	2651650	3L_2651650_DEL [dm3] 3L_2651650_DEL [dm6]	CTC	C	1.273e^-4	0.903	UPSTREAM Snup & 1 other INTRON Aats-pro
3L	7398851	3L_7398851_SNP [dm3] 3L_7405751_SNP [dm6]	G	A	1.273e^-4	0.903	UPSTREAM pncr015:3L INTERGENIC
3L	7398970	3L_7398970_SNP [dm3] 3L_7405870_SNP [dm6]	C	T	1.273e^-4	0.903	UPSTREAM pncr015:3L INTERGENIC
3R	14788555	3R_14788555_SNP [dm3] 3R_18962833_SNP [dm6]	C	T	1.273e^-4	0.903	INTRON CG42613 & 1 other
3R	14788579	3R_14788579_SNP [dm3] 3R_18962857_SNP [dm6]	C	G	1.273e^-4	0.903	INTRON CG42613 & 1 other
X	19493229	X_19493229_SNP [dm3] X_19599196_SNP [dm6]	C	T	1.273e^-4	0.903	UTR_3_PRIME RpS10b DOWNSTREAM CG14220 & 1 other
3R	7073079	3R_7073079_SNP [dm3] 3R_11247357_SNP [dm6]	G	A	1.292e^-4	0.903	DOWNSTREAM CR43283 & 1 other INTERGENIC
3L	16190193	3L_16190193_SNP [dm3] 3L_16197093_SNP [dm6]	T	A	1.294e^-4	0.903	UPSTREAM CG33687 EXON CR45437
2R	13906625	2R_13906625_SNP [dm3] 2R_18019120_SNP [dm6]	T	G	1.295e^-4	0.903	SYNONYMOUS_CODING CG5084	TF binding site mE1_TFBS_cad
3L	9617491	3L_9617491_SNP [dm3] 3L_9624391_SNP [dm6]	T	A	1.339e^-4	0.903	DOWNSTREAM LanB2 INTRON CG3335
3L	3080558	3L_3080558_SNP [dm3] 3L_3080558_SNP [dm6]	A	G	1.368e^-4	0.903	INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	2517600	X_2517600_SNP [dm3] X_2623567_SNP [dm6]	T	C	1.374e^-4	0.903	INTRON brv3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_ttk
X	2517620	X_2517620_SNP [dm3] X_2623587_SNP [dm6]	T	C	1.374e^-4	0.903	INTRON brv3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_ttk
3L	6812471	3L_6812471_SNP [dm3] 3L_6819371_SNP [dm6]	T	C	1.392e^-4	0.903	INTERGENIC
2L	2819145	2L_2819145_SNP [dm3] 2L_2819145_SNP [dm6]	A	G	1.404e^-4	0.903	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15345796	2L_15345796_SNP [dm3] 2L_15345796_SNP [dm6]	T	C	1.413e^-4	0.903	INTERGENIC
2L	3007061	2L_3007061_SNP [dm3] 2L_3007061_SNP [dm6]	A	G	1.467e^-4	0.903	INTRON CG17265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	3427607	2L_3427607_SNP [dm3] 2L_3427607_SNP [dm6]	T	C	1.467e^-4	0.903	UPSTREAM pgant2 INTERGENIC
2L	6566668	2L_6566668_SNP [dm3] 2L_6566668_SNP [dm6]	T	C	1.470e^-4	0.903	UPSTREAM CG13766 INTERGENIC
3R	663683	3R_663683_SNP [dm3] 3R_4837961_SNP [dm6]	T	A	1.486e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	6926309	3L_6926309_SNP [dm3] 3L_6933209_SNP [dm6]	C	T	1.499e^-4	0.903	SYNONYMOUS_CODING CG14820
2L	18214843	2L_18214843_SNP [dm3] 2L_18214843_SNP [dm6]	T	G	1.518e^-4	0.903	INTRON CG42750
3L	3671608	3L_3671608_SNP [dm3] 3L_3671608_SNP [dm6]	C	T	1.526e^-4	0.903	INTERGENIC
X	8251755	X_8251755_SNP [dm3] X_8357722_SNP [dm6]	A	G	1.526e^-4	0.903	INTRON nAChRalpha3
X	12513579	X_12513579_INS [dm3] X_12619546_INS [dm6]	A	AAATTTAACCTAT...	1.552e^-4	0.903	INTRON CG11085
X	12513583	X_12513583_SNP [dm3] X_12619550_SNP [dm6]	G	T	1.552e^-4	0.903	INTRON CG11085
X	12513590	X_12513590_MNP [dm3] X_12619557_MNP [dm6]	GCC	TTT	1.552e^-4	0.903	INTRON CG11085
X	12513594	X_12513594_SNP [dm3] X_12619561_SNP [dm6]	A	T	1.552e^-4	0.903	INTRON CG11085
3R	20331597	3R_20331597_SNP [dm3] 3R_24505875_SNP [dm6]	C	T	1.556e^-4	0.903	INTERGENIC
3L	14070697	3L_14070697_SNP [dm3] 3L_14077597_SNP [dm6]	G	A	1.560e^-4	0.903	INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	632683	X_632683_SNP [dm3] X_738650_SNP [dm6]	G	T	1.596e^-4	0.903	INTRON sdk
3L	5369240	3L_5369240_SNP [dm3] 3L_5376140_SNP [dm6]	G	T	1.603e^-4	0.903	INTERGENIC
3R	2078773	3R_2078773_SNP [dm3] 3R_6253051_SNP [dm6]	A	G	1.637e^-4	0.903	INTERGENIC
2R	13907135	2R_13907135_SNP [dm3] 2R_18019630_SNP [dm6]	C	T	1.641e^-4	0.903	SYNONYMOUS_CODING CG5084 UPSTREAM CG10910	TF binding site mE1_TFBS_cad
2R	13907196	2R_13907196_SNP [dm3] 2R_18019691_SNP [dm6]	A	G	1.641e^-4	0.903	NON_SYNONYMOUS_CODING CG5084 UPSTREAM CG10910	TF binding site mE1_TFBS_cad
2R	13907205	2R_13907205_SNP [dm3] 2R_18019700_SNP [dm6]	A	C	1.641e^-4	0.903	NON_SYNONYMOUS_CODING CG5084 UPSTREAM CG10910	TF binding site mE1_TFBS_cad
2R	14116677	2R_14116677_SNP [dm3] 2R_18229172_SNP [dm6]	A	T	1.641e^-4	0.903	DOWNSTREAM CR45310 EXON CR45311	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	18222437	2L_18222437_SNP [dm3] 2L_18222437_SNP [dm6]	C	A	1.652e^-4	0.903	INTRON CG42750
3L	10820411	3L_10820411_SNP [dm3] 3L_10827311_SNP [dm6]	T	C	1.655e^-4	0.903	INTERGENIC
X	20333576	X_20333576_SNP [dm3] X_20462549_SNP [dm6]	T	A	1.655e^-4	0.903	SYNONYMOUS_CODING CG32506	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	20338458	X_20338458_SNP [dm3] X_20467431_SNP [dm6]	A	T	1.655e^-4	0.903	UPSTREAM GstT3 DOWNSTREAM CG32506 INTERGENIC
X	2922909	X_2922909_SNP [dm3] X_3028876_SNP [dm6]	G	A	1.655e^-4	0.903	INTRON kirre
X	2922920	X_2922920_SNP [dm3] X_3028887_SNP [dm6]	C	T	1.655e^-4	0.903	INTRON kirre
2L	18234375	2L_18234375_SNP [dm3] 2L_18234375_SNP [dm6]	T	G	1.655e^-4	0.903	INTRON CG42750
3R	24719302	3R_24719302_SNP [dm3] 3R_28893580_SNP [dm6]	A	T	1.673e^-4	0.903	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo
3R	9388985	3R_9388985_SNP [dm3] 3R_13563263_SNP [dm6]	T	A	1.673e^-4	0.903	INTERGENIC
2L	4794140	2L_4794140_SNP [dm3] 2L_4794140_SNP [dm6]	G	A	1.694e^-4	0.903	UPSTREAM CG3294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13918761	2L_13918761_SNP [dm3] 2L_13918761_SNP [dm6]	C	T	1.704e^-4	0.903	INTRON Ance-3
2L	7168682	2L_7168682_SNP [dm3] 2L_7168682_SNP [dm6]	A	C	1.710e^-4	0.903	INTERGENIC
2L	5916509	2L_5916509_SNP [dm3] 2L_5916509_SNP [dm6]	C	T	1.758e^-4	0.903	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_chinmo
2R	13123859	2R_13123859_SNP [dm3] 2R_17236354_SNP [dm6]	A	T	1.783e^-4	0.903	INTRON mbl
2R	13130924	2R_13130924_SNP [dm3] 2R_17243419_SNP [dm6]	C	T	1.783e^-4	0.903	INTRON mbl
2R	16499822	2R_16499822_SNP [dm3] 2R_20612317_SNP [dm6]	T	C	1.783e^-4	0.903	INTRON Hil
2R	19301073	2R_19301073_SNP [dm3] 2R_23413550_SNP [dm6]	G	C	1.783e^-4	0.903	NON_SYNONYMOUS_CODING CG9812 INTRON CG9812
3L	3521455	3L_3521455_SNP [dm3] 3L_3521455_SNP [dm6]	G	C	1.783e^-4	0.903	INTRON Eip63E
X	11353044	X_11353044_SNP [dm3] X_11459011_SNP [dm6]	A	G	1.783e^-4	0.903	UTR_3_PRIME HP5 UPSTREAM CG43155
X	20339958	X_20339958_SNP [dm3] X_20468931_SNP [dm6]	T	C	1.798e^-4	0.903	INTRON GstT3
X	20340211	X_20340211_SNP [dm3] X_20469184_SNP [dm6]	C	A	1.798e^-4	0.903	SYNONYMOUS_CODING GstT3 DOWNSTREAM RhoGAP19D
X	20340226	X_20340226_SNP [dm3] X_20469199_SNP [dm6]	C	T	1.798e^-4	0.903	SYNONYMOUS_CODING GstT3 DOWNSTREAM RhoGAP19D
2L	18234340	2L_18234340_SNP [dm3] 2L_18234340_SNP [dm6]	T	C	1.808e^-4	0.903	INTRON CG42750
2L	766916	2L_766916_SNP [dm3] 2L_766916_SNP [dm6]	C	G	1.821e^-4	0.903	INTERGENIC
2L	20091029	2L_20091029_SNP [dm3] 2L_20091029_SNP [dm6]	A	G	1.831e^-4	0.903	SYNONYMOUS_CODING CG10747 UPSTREAM CG10721	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	27456958	3R_27456958_SNP [dm3] 3R_31631236_SNP [dm6]	C	T	1.841e^-4	0.903	INTRON kek6
3R	19574085	3R_19574085_SNP [dm3] 3R_23748363_SNP [dm6]	T	C	1.862e^-4	0.903	SYNONYMOUS_CODING Hmgcr	TF binding site mE1_TFBS_cad
3R	9958935	3R_9958935_SNP [dm3] 3R_14133213_SNP [dm6]	A	C	1.862e^-4	0.903	INTERGENIC
3R	25168923	3R_25168923_SNP [dm3] 3R_29343201_SNP [dm6]	A	T	1.864e^-4	0.903	INTERGENIC
2L	2687943	2L_2687943_SNP [dm3] 2L_2687943_SNP [dm6]	G	T	1.869e^-4	0.903	INTRON CG31690
3R	11963786	3R_11963786_SNP [dm3] 3R_16138064_SNP [dm6]	G	T	1.890e^-4	0.903	INTRON Sb	TF binding site mE1_TFBS_inv
3R	17067574	3R_17067574_SNP [dm3] 3R_21241852_SNP [dm6]	C	T	1.905e^-4	0.903	UPSTREAM CG5892 INTERGENIC	regulatory region REDfly_CRMs
3R	6977574	3R_6977574_SNP [dm3] 3R_11151852_SNP [dm6]	C	A	1.905e^-4	0.903	UTR_3_PRIME Ugt86Di DOWNSTREAM Ugt86Di
3L	4917323	3L_4917323_SNP [dm3] 3L_4917323_SNP [dm6]	T	G	1.928e^-4	0.903	INTRON Rh50
3L	4917324	3L_4917324_SNP [dm3] 3L_4917324_SNP [dm6]	C	G	1.928e^-4	0.903	INTRON Rh50
2L	10349333	2L_10349333_SNP [dm3] 2L_10349333_SNP [dm6]	A	T	1.942e^-4	0.903	INTRON CG34367
2R	13956042	2R_13956042_SNP [dm3] 2R_18068537_SNP [dm6]	G	A	1.972e^-4	0.903	INTRON CG34386
X	5038023	X_5038023_INS [dm3] X_5143990_INS [dm6]	T	TA	1.976e^-4	0.903	INTRON rg & 1 other
2L	18224841	2L_18224841_SNP [dm3] 2L_18224841_SNP [dm6]	A	G	1.984e^-4	0.903	INTRON CG42750
3L	8577664	3L_8577664_SNP [dm3] 3L_8584564_SNP [dm6]	G	A	1.988e^-4	0.903	UPSTREAM CG43078 INTRON CG43078
3R	24627840	3R_24627840_SNP [dm3] 3R_28802118_SNP [dm6]	G	A	1.995e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12507955	X_12507955_SNP [dm3] X_12613922_SNP [dm6]	A	C	1.996e^-4	0.903	DOWNSTREAM CR45621 INTRON CG2543 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6559501	2L_6559501_SNP [dm3] 2L_6559501_SNP [dm6]	C	T	2.091e^-4	0.903	UTR_5_PRIME CG11043 UTR_3_PRIME CG9596 DOWNSTREAM CG9596 & 1 other	TF binding site mE1_TFBS_cad
2L	5954596	2L_5954596_SNP [dm3] 2L_5954596_SNP [dm6]	G	T	2.092e^-4	0.903	NON_SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
X	19974406	X_19974406_SNP [dm3] X_20080373_SNP [dm6]	G	T	2.100e^-4	0.903	INTERGENIC
2L	769842	2L_769842_SNP [dm3] 2L_769842_SNP [dm6]	T	C	2.104e^-4	0.903	INTERGENIC
2L	769871	2L_769871_SNP [dm3] 2L_769871_SNP [dm6]	T	G	2.104e^-4	0.903	INTERGENIC
2L	769872	2L_769872_SNP [dm3] 2L_769872_SNP [dm6]	T	A	2.104e^-4	0.903	INTERGENIC
2L	769876	2L_769876_SNP [dm3] 2L_769876_SNP [dm6]	T	C	2.104e^-4	0.903	INTERGENIC
2L	814505	2L_814505_SNP [dm3] 2L_814505_SNP [dm6]	G	C	2.112e^-4	0.903	SYNONYMOUS_CODING Saf6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11963731	3R_11963731_SNP [dm3] 3R_16138009_SNP [dm6]	A	G	2.115e^-4	0.903	INTRON Sb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10795398	2R_10795398_SNP [dm3] 2R_14907893_SNP [dm6]	A	G	2.121e^-4	0.903	UTR_5_PRIME CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1603601	3L_1603601_SNP [dm3] 3L_1603601_SNP [dm6]	T	G	2.134e^-4	0.903	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG12104	TF binding site mE1_TFBS_cad
2R	14900801	2R_14900801_SNP [dm3] 2R_19013296_SNP [dm6]	T	C	2.136e^-4	0.903	INTERGENIC
X	19085582	X_19085582_SNP [dm3] X_19191549_SNP [dm6]	A	G	2.136e^-4	0.903	DOWNSTREAM HP1D3csd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	8430554	X_8430554_SNP [dm3] X_8536521_SNP [dm6]	T	C	2.136e^-4	0.903	INTRON Nrg
2L	2856358	2L_2856358_SNP [dm3] 2L_2856358_SNP [dm6]	C	A	2.137e^-4	0.903	UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2856419	2L_2856419_SNP [dm3] 2L_2856419_SNP [dm6]	C	T	2.137e^-4	0.903	SYNONYMOUS_CODING RpS21 UPSTREAM CG3104 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2856613	2L_2856613_SNP [dm3] 2L_2856613_SNP [dm6]	G	C	2.137e^-4	0.903	UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	2856615	2L_2856615_SNP [dm3] 2L_2856615_SNP [dm6]	A	C	2.137e^-4	0.903	UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	2856623	2L_2856623_SNP [dm3] 2L_2856623_SNP [dm6]	C	T	2.137e^-4	0.903	SPLICE_SITE_REGION RpS21 UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	2856922	2L_2856922_SNP [dm3] 2L_2856922_SNP [dm6]	G	A	2.137e^-4	0.903	UTR_3_PRIME RpS21 UPSTREAM CG2991 DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	2856926	2L_2856926_SNP [dm3] 2L_2856926_SNP [dm6]	T	A	2.137e^-4	0.903	UTR_3_PRIME RpS21 UPSTREAM CG2991 DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	6574229	2L_6574229_SNP [dm3] 2L_6574229_SNP [dm6]	G	A	2.137e^-4	0.903	SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad
2R	5233267	2R_5233267_SNP [dm3] 2R_9345762_SNP [dm6]	G	A	2.180e^-4	0.903	NON_SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
2R	11971422	2R_11971422_SNP [dm3] 2R_16083917_SNP [dm6]	A	G	2.192e^-4	0.903	INTRON Dg	TF binding site mE1_TFBS_cad
3L	7989374	3L_7989374_INS [dm3] 3L_7996274_INS [dm6]	T	TTTTTTG	2.192e^-4	0.903	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad
3L	7989376	3L_7989376_DEL [dm3] 3L_7996276_DEL [dm6]	TA	T	2.192e^-4	0.903	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad
3L	16376878	3L_16376878_SNP [dm3] 3L_16383778_SNP [dm6]	T	C	2.204e^-4	0.903	SYNONYMOUS_CODING CG4729 UPSTREAM CG4729	TF binding site mE1_TFBS_sens
2L	8288524	2L_8288524_SNP [dm3] 2L_8288524_SNP [dm6]	C	T	2.228e^-4	0.903	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23149044	3R_23149044_SNP [dm3] 3R_27323322_SNP [dm6]	A	G	2.235e^-4	0.903	UPSTREAM CG3339 INTERGENIC
3L	5427739	3L_5427739_SNP [dm3] 3L_5434639_SNP [dm6]	G	A	2.250e^-4	0.903	INTRON CG34391
3L	1814909	3L_1814909_SNP [dm3] 3L_1814909_SNP [dm6]	C	A	2.262e^-4	0.903	INTRON GV1
3L	7147165	3L_7147165_SNP [dm3] 3L_7154065_SNP [dm6]	C	T	2.265e^-4	0.903	INTRON corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10322866	2L_10322866_SNP [dm3] 2L_10322866_SNP [dm6]	A	C	2.273e^-4	0.903	UPSTREAM CG4995 INTRON CG5381 & 1 other
2L	2056888	2L_2056888_SNP [dm3] 2L_2056888_SNP [dm6]	A	T	2.278e^-4	0.903	INTRON Or22c
2R	10509199	2R_10509199_SNP [dm3] 2R_14621694_SNP [dm6]	G	A	2.278e^-4	0.903	UPSTREAM snoRNA:Me18S-C1366 & 4 others EXON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_zfh1
2R	13132622	2R_13132622_SNP [dm3] 2R_17245117_SNP [dm6]	A	G	2.278e^-4	0.903	DOWNSTREAM CG18469 INTRON mbl
2R	16071977	2R_16071977_SNP [dm3] 2R_20184472_SNP [dm6]	G	T	2.278e^-4	0.903	INTERGENIC
2R	16073579	2R_16073579_SNP [dm3] 2R_20186074_SNP [dm6]	C	T	2.278e^-4	0.903	INTERGENIC
2R	16073673	2R_16073673_SNP [dm3] 2R_20186168_SNP [dm6]	T	G	2.278e^-4	0.903	INTERGENIC
2R	16073708	2R_16073708_SNP [dm3] 2R_20186203_SNP [dm6]	G	T	2.278e^-4	0.903	INTERGENIC
2R	16073709	2R_16073709_SNP [dm3] 2R_20186204_SNP [dm6]	T	C	2.278e^-4	0.903	INTERGENIC
2R	16073735	2R_16073735_SNP [dm3] 2R_20186230_SNP [dm6]	T	G	2.278e^-4	0.903	INTERGENIC
2R	16294631	2R_16294631_SNP [dm3] 2R_20407126_SNP [dm6]	A	G	2.278e^-4	0.903	INTERGENIC
2R	16294644	2R_16294644_SNP [dm3] 2R_20407139_SNP [dm6]	T	G	2.278e^-4	0.903	INTERGENIC
2R	16294892	2R_16294892_SNP [dm3] 2R_20407387_SNP [dm6]	T	C	2.278e^-4	0.903	INTERGENIC
2R	18369447	2R_18369447_SNP [dm3] 2R_22481942_SNP [dm6]	C	T	2.278e^-4	0.903	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18824577	2R_18824577_SNP [dm3] 2R_22937054_SNP [dm6]	A	T	2.278e^-4	0.903	UTR_5_PRIME CG3800 UPSTREAM CG9849 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	19693106	2R_19693106_SNP [dm3] 2R_23805583_SNP [dm6]	G	C	2.278e^-4	0.903	NON_SYNONYMOUS_CODING CG5539 DOWNSTREAM Ssrp INTRON CG13561	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19693133	2R_19693133_SNP [dm3] 2R_23805610_SNP [dm6]	A	G	2.278e^-4	0.903	SYNONYMOUS_CODING CG5539 DOWNSTREAM Ssrp INTRON CG13561	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15420696	3L_15420696_SNP [dm3] 3L_15427596_SNP [dm6]	C	A	2.278e^-4	0.903	INTERGENIC
3L	5433463	3L_5433463_SNP [dm3] 3L_5440363_SNP [dm6]	G	C	2.278e^-4	0.903	UTR_3_PRIME CG34391 DOWNSTREAM CG34391
3L	8578819	3L_8578819_SNP [dm3] 3L_8585719_SNP [dm6]	A	T	2.278e^-4	0.903	INTRON CG43078
3L	8583028	3L_8583028_INS [dm3] 3L_8589928_INS [dm6]	T	TT	2.278e^-4	0.903	UPSTREAM CG43078 INTRON CG43078
3L	8584652	3L_8584652_SNP [dm3] 3L_8591552_SNP [dm6]	C	T	2.278e^-4	0.903	SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9886121	3L_9886121_SNP [dm3] 3L_9893021_SNP [dm6]	G	A	2.278e^-4	0.903	UTR_3_PRIME CalpB DOWNSTREAM CG6709 & 2 others
3L	9886140	3L_9886140_SNP [dm3] 3L_9893040_SNP [dm6]	G	A	2.278e^-4	0.903	UTR_3_PRIME CalpB DOWNSTREAM CG6709 & 2 others
3R	26544554	3R_26544554_INS [dm3] 3R_30718832_INS [dm6]	A	AC	2.278e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	17549505	X_17549505_SNP [dm3] X_17655472_SNP [dm6]	T	G	2.278e^-4	0.903	INTRON IntS2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9027296	X_9027296_SNP [dm3] X_9133263_SNP [dm6]	C	G	2.278e^-4	0.903	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	9027298	X_9027298_DEL [dm3] X_9133265_DEL [dm6]	TT	T	2.278e^-4	0.903	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	9027319	X_9027319_SNP [dm3] X_9133286_SNP [dm6]	C	T	2.278e^-4	0.903	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	12386818	3R_12386818_SNP [dm3] 3R_16561096_SNP [dm6]	T	C	2.279e^-4	0.903	INTRON CG42342
3R	25168907	3R_25168907_SNP [dm3] 3R_29343185_SNP [dm6]	G	A	2.279e^-4	0.903	INTERGENIC
3R	3621128	3R_3621128_SNP [dm3] 3R_7795406_SNP [dm6]	C	T	2.279e^-4	0.903	INTRON CG2641
3R	27275018	3R_27275018_SNP [dm3] 3R_31449296_SNP [dm6]	G	T	2.292e^-4	0.903	INTRON Gprk2
2L	18121706	2L_18121706_SNP [dm3] 2L_18121706_SNP [dm6]	C	A	2.295e^-4	0.903	UPSTREAM CG5758 INTRON CG5758
3R	21751952	3R_21751952_SNP [dm3] 3R_25926230_SNP [dm6]	A	G	2.303e^-4	0.903	INTRON CCAP-R
X	21987554	X_21987554_SNP [dm3] X_22585718_SNP [dm6]	G	T	2.307e^-4	0.903	INTRON Cda4	TF binding site mE1_TFBS_HSA
3R	26369271	3R_26369271_SNP [dm3] 3R_30543549_SNP [dm6]	A	G	2.326e^-4	0.903	INTRON tmod	TF binding site BDTNP1_TFBS_twi
3L	16257488	3L_16257488_SNP [dm3] 3L_16264388_SNP [dm6]	C	T	2.341e^-4	0.903	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	3023399	3R_3023399_SNP [dm3] 3R_7197677_SNP [dm6]	C	G	2.363e^-4	0.903	INTRON lap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1364507	2L_1364507_SNP [dm3] 2L_1364507_SNP [dm6]	G	C	2.373e^-4	0.903	INTERGENIC
2L	1364571	2L_1364571_SNP [dm3] 2L_1364571_SNP [dm6]	C	T	2.373e^-4	0.903	INTERGENIC
3L	17809734	3L_17809734_SNP [dm3] 3L_17816634_SNP [dm6]	T	A	2.377e^-4	0.903	NON_SYNONYMOUS_CODING Ir75a
2L	6919679	2L_6919679_SNP [dm3] 2L_6919679_SNP [dm6]	A	G	2.390e^-4	0.903	SYNONYMOUS_CODING x16 UPSTREAM nop5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	5648650	2R_5648650_SNP [dm3] 2R_9761145_SNP [dm6]	G	A	2.397e^-4	0.903	INTRON trpl
3L	721205	3L_721205_SNP [dm3] 3L_721205_SNP [dm6]	C	T	2.459e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	721259	3L_721259_SNP [dm3] 3L_721259_SNP [dm6]	A	T	2.459e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	721262	3L_721262_SNP [dm3] 3L_721262_SNP [dm6]	G	A	2.459e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	721272	3L_721272_SNP [dm3] 3L_721272_SNP [dm6]	T	A	2.459e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1589351	3L_1589351_SNP [dm3] 3L_1589351_SNP [dm6]	G	C	2.480e^-4	0.903	INTRON CG13917
2R	16611431	2R_16611431_SNP [dm3] 2R_20723926_SNP [dm6]	T	C	2.498e^-4	0.903	DOWNSTREAM CR44660 INTRON dpr
2R	16611450	2R_16611450_SNP [dm3] 2R_20723945_SNP [dm6]	C	T	2.498e^-4	0.903	DOWNSTREAM CR44660 INTRON dpr
X	11043071	X_11043071_SNP [dm3] X_11149038_SNP [dm6]	T	C	2.509e^-4	0.903	UPSTREAM Lint-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	18683132	3R_18683132_SNP [dm3] 3R_22857410_SNP [dm6]	G	A	2.516e^-4	0.903	INTERGENIC
3R	19533175	3R_19533175_SNP [dm3] 3R_23707453_SNP [dm6]	T	C	2.520e^-4	0.903	UPSTREAM CR44052 INTRON CG31414
3R	19533176	3R_19533176_DEL [dm3] 3R_23707454_DEL [dm6]	CT	C	2.520e^-4	0.903	UPSTREAM CR44052 INTRON CG31414
3L	1884972	3L_1884972_SNP [dm3] 3L_1884972_SNP [dm6]	C	T	2.528e^-4	0.903	UTR_5_PRIME Aprt UPSTREAM Tmhs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	11423956	2R_11423956_SNP [dm3] 2R_15536451_SNP [dm6]	C	A	2.555e^-4	0.903	INTRON CG30471
X	17635879	X_17635879_DEL [dm3] X_17741846_DEL [dm6]	CC	C	2.559e^-4	0.903	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	18240078	2L_18240078_SNP [dm3] 2L_18240078_SNP [dm6]	A	C	2.585e^-4	0.903	INTRON CG42750
2R	1837087	2R_1837087_SNP [dm3] 2R_5949582_SNP [dm6]	C	G	2.588e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	6851091	3R_6851091_SNP [dm3] 3R_11025369_SNP [dm6]	A	T	2.615e^-4	0.903	INTRON CG34114
3L	20279518	3L_20279518_SNP [dm3] 3L_20286418_SNP [dm6]	T	C	2.626e^-4	0.903	INTRON gogo
3L	20279983	3L_20279983_SNP [dm3] 3L_20286883_SNP [dm6]	C	G	2.626e^-4	0.903	INTRON gogo
3L	16257485	3L_16257485_DEL [dm3] 3L_16264385_DEL [dm6]	AA	A	2.647e^-4	0.903	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	21389022	3R_21389022_SNP [dm3] 3R_25563300_SNP [dm6]	T	C	2.647e^-4	0.903	INTRON msi
3L	17817910	3L_17817910_SNP [dm3] 3L_17824810_SNP [dm6]	A	G	2.670e^-4	0.903	INTRON Grd
2L	6336532	2L_6336532_SNP [dm3] 2L_6336532_SNP [dm6]	A	G	2.676e^-4	0.903	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2856331	2L_2856331_SNP [dm3] 2L_2856331_SNP [dm6]	C	G	2.679e^-4	0.903	UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9263286	2L_9263286_INS [dm3] 2L_9263286_INS [dm6]	T	TT	2.679e^-4	0.903	UPSTREAM CR45262 INTRON Ggamma30A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9263384	2L_9263384_SNP [dm3] 2L_9263384_SNP [dm6]	C	T	2.679e^-4	0.903	UPSTREAM CR45262 INTRON Ggamma30A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9542441	2L_9542441_SNP [dm3] 2L_9542441_SNP [dm6]	C	A	2.679e^-4	0.903	UTR_3_PRIME CG17855 UPSTREAM Cpr30B
3L	9141603	3L_9141603_SNP [dm3] 3L_9148503_SNP [dm6]	G	T	2.698e^-4	0.903	UTR_3_PRIME Rdl DOWNSTREAM Rdl
2R	13901947	2R_13901947_SNP [dm3] 2R_18014442_SNP [dm6]	C	T	2.751e^-4	0.903	INTERGENIC
2R	18438083	2R_18438083_SNP [dm3] 2R_22550578_SNP [dm6]	T	C	2.751e^-4	0.903	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad
2R	18438116	2R_18438116_SNP [dm3] 2R_22550611_SNP [dm6]	C	A	2.751e^-4	0.903	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad
2L	18216851	2L_18216851_SNP [dm3] 2L_18216851_SNP [dm6]	A	G	2.758e^-4	0.903	INTRON CG42750
2L	18222758	2L_18222758_DEL [dm3] 2L_18222758_DEL [dm6]	ATTGATAATT	C	2.758e^-4	0.903	INTRON CG42750
X	17206193	X_17206193_SNP [dm3] X_17312160_SNP [dm6]	C	G	2.759e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	17206201	X_17206201_SNP [dm3] X_17312168_SNP [dm6]	G	A	2.759e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	17206231	X_17206231_INS [dm3] X_17312198_INS [dm6]	A	AGTTTCCGTTTAGATAGTAA...	2.759e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	16708646	X_16708646_DEL [dm3] X_16814613_DEL [dm6]	AAGC	TTT	2.760e^-4	0.903	DOWNSTREAM CR44129 INTRON CG4829	TF binding site BDTNP1_TFBS_dl
3L	19218559	3L_19218559_SNP [dm3] 3L_19225459_SNP [dm6]	C	T	2.776e^-4	0.903	INTRON fz2
2L	10555481	2L_10555481_SNP [dm3] 2L_10555481_SNP [dm6]	C	T	2.825e^-4	0.903	INTRON Trim9	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9274987	2L_9274987_SNP [dm3] 2L_9274987_SNP [dm6]	G	T	2.825e^-4	0.903	INTRON Ggamma30A
X	19493314	X_19493314_SNP [dm3] X_19599281_SNP [dm6]	G	A	2.826e^-4	0.903	UTR_3_PRIME RpS10b DOWNSTREAM CG14220 & 1 other
X	14694385	X_14694385_SNP [dm3] X_14800352_SNP [dm6]	C	T	2.866e^-4	0.903	SYNONYMOUS_CODING rut
3L	2651570	3L_2651570_SNP [dm3] 3L_2651570_SNP [dm6]	T	A	2.888e^-4	0.903	SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
X	4525425	X_4525425_SNP [dm3] X_4631392_SNP [dm6]	A	G	2.890e^-4	0.903	UTR_3_PRIME CG12179 UPSTREAM CG12184
2R	19975175	2R_19975175_SNP [dm3] 2R_24087652_SNP [dm6]	G	A	2.891e^-4	0.903	SYNONYMOUS_CODING snama
2R	7151349	2R_7151349_SNP [dm3] 2R_11263844_SNP [dm6]	T	A	2.892e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
X	20333495	X_20333495_SNP [dm3] X_20462468_SNP [dm6]	A	C	2.910e^-4	0.903	SYNONYMOUS_CODING CG32506	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5728191	3L_5728191_SNP [dm3] 3L_5735091_SNP [dm6]	T	A	2.915e^-4	0.903	INTRON sif
3L	2651668	3L_2651668_SNP [dm3] 3L_2651668_SNP [dm6]	G	C	2.917e^-4	0.903	SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
3R	6136514	3R_6136514_SNP [dm3] 3R_10310792_SNP [dm6]	A	G	2.927e^-4	0.903	INTRON CG6293
3L	12042901	3L_12042901_INS [dm3] 3L_12049801_INS [dm6]	C	CACGTACTGC	2.936e^-4	0.903	INTRON rols
2L	10322883	2L_10322883_SNP [dm3] 2L_10322883_SNP [dm6]	C	T	2.942e^-4	0.903	UPSTREAM CG4995 INTRON CG5381 & 1 other
2L	10322889	2L_10322889_SNP [dm3] 2L_10322889_SNP [dm6]	T	C	2.942e^-4	0.903	UPSTREAM CG4995 INTRON CG5381 & 1 other
2L	2644388	2L_2644388_SNP [dm3] 2L_2644388_SNP [dm6]	T	C	2.942e^-4	0.903	INTERGENIC
2L	2853928	2L_2853928_SNP [dm3] 2L_2853928_SNP [dm6]	T	A	2.942e^-4	0.903	INTRON CG3104	TF binding site mE1_TFBS_cnc
2L	2854000	2L_2854000_SNP [dm3] 2L_2854000_SNP [dm6]	T	C	2.942e^-4	0.903	INTRON CG3104	TF binding site mE1_TFBS_cnc
2L	3432719	2L_3432719_SNP [dm3] 2L_3432719_SNP [dm6]	G	C	2.942e^-4	0.903	INTERGENIC
2L	3432755	2L_3432755_SNP [dm3] 2L_3432755_SNP [dm6]	T	A	2.942e^-4	0.903	INTERGENIC
2L	3531844	2L_3531844_SNP [dm3] 2L_3531844_SNP [dm6]	A	T	2.942e^-4	0.903	SYNONYMOUS_CODING Che-13	TF binding site mE1_TFBS_sens
2L	3532202	2L_3532202_SNP [dm3] 2L_3532202_SNP [dm6]	C	T	2.942e^-4	0.903	INTRON Che-13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	3544469	2L_3544469_SNP [dm3] 2L_3544469_SNP [dm6]	G	T	2.942e^-4	0.903	INTRON drm
2L	3575133	2L_3575133_SNP [dm3] 2L_3575133_SNP [dm6]	A	C	2.942e^-4	0.903	UPSTREAM CR43822 INTERGENIC
2L	3575164	2L_3575164_SNP [dm3] 2L_3575164_SNP [dm6]	A	C	2.942e^-4	0.903	UPSTREAM CR43822 INTERGENIC
2L	3575165	2L_3575165_SNP [dm3] 2L_3575165_SNP [dm6]	G	T	2.942e^-4	0.903	UPSTREAM CR43822 INTERGENIC
2L	3575181	2L_3575181_SNP [dm3] 2L_3575181_SNP [dm6]	G	T	2.942e^-4	0.903	UPSTREAM CR43822 INTERGENIC
2L	6414435	2L_6414435_INS [dm3] 2L_6414435_INS [dm6]	A	AGCTTTGTATTAAGTCTTCG...	2.942e^-4	0.903	UTR_3_PRIME CG13982 DOWNSTREAM Tig & 1 other
2L	9872828	2L_9872828_SNP [dm3] 2L_9872828_SNP [dm6]	A	T	2.942e^-4	0.903	INTRON nAChRalpha6
3L	20844706	3L_20844706_SNP [dm3] 3L_20851606_SNP [dm6]	C	A	2.982e^-4	0.903	INTRON CG32432
3L	18110534	3L_18110534_SNP [dm3] 3L_18117434_SNP [dm6]	T	G	2.986e^-4	0.903	UTR_3_PRIME CG32195 INTRON CG7341
3R	13464558	3R_13464558_SNP [dm3] 3R_17638836_SNP [dm6]	T	A	2.990e^-4	0.903	UPSTREAM CR45222 INTRON CG43175 & 1 other
2R	9444958	2R_9444958_SNP [dm3] 2R_13557453_SNP [dm6]	A	T	3.002e^-4	0.903	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9444972	2R_9444972_SNP [dm3] 2R_13557467_SNP [dm6]	A	C	3.002e^-4	0.903	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9444978	2R_9444978_SNP [dm3] 2R_13557473_SNP [dm6]	A	T	3.002e^-4	0.903	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	17146180	3R_17146180_SNP [dm3] 3R_21320458_SNP [dm6]	T	C	3.035e^-4	0.903	UTR_3_PRIME CG16791 DOWNSTREAM CG16791
2L	9517584	2L_9517584_SNP [dm3] 2L_9517584_SNP [dm6]	T	C	3.041e^-4	0.903	SYNONYMOUS_CODING CG33298
2L	7254649	2L_7254649_SNP [dm3] 2L_7254649_SNP [dm6]	G	T	3.074e^-4	0.903	DOWNSTREAM Wnt4 INTERGENIC
3R	22069813	3R_22069813_SNP [dm3] 3R_26244091_SNP [dm6]	A	C	3.092e^-4	0.903	INTRON CR42745
2R	17050682	2R_17050682_SNP [dm3] 2R_21163177_SNP [dm6]	C	T	3.093e^-4	0.903	INTRON CG4266
3L	10466173	3L_10466173_SNP [dm3] 3L_10473073_SNP [dm6]	C	A	3.093e^-4	0.903	INTERGENIC
3L	10466292	3L_10466292_SNP [dm3] 3L_10473192_SNP [dm6]	C	T	3.093e^-4	0.903	INTERGENIC
3L	1321786	3L_1321786_SNP [dm3] 3L_1321786_SNP [dm6]	G	C	3.093e^-4	0.903	DOWNSTREAM CG9184 INTRON Myo61F
3R	11854711	3R_11854711_SNP [dm3] 3R_16028989_SNP [dm6]	A	G	3.093e^-4	0.903	INTRON pnr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	26532745	3R_26532745_INS [dm3] 3R_30707023_INS [dm6]	A	ATT	3.093e^-4	0.903	UPSTREAM CG31010 INTERGENIC
3R	26532748	3R_26532748_SNP [dm3] 3R_30707026_SNP [dm6]	T	A	3.093e^-4	0.903	UPSTREAM CG31010 INTERGENIC
3R	26532753	3R_26532753_SNP [dm3] 3R_30707031_SNP [dm6]	T	A	3.093e^-4	0.903	UPSTREAM CG31010 INTERGENIC
3R	26532794	3R_26532794_SNP [dm3] 3R_30707072_SNP [dm6]	G	T	3.093e^-4	0.903	UPSTREAM CG31010 INTERGENIC
3R	26532796	3R_26532796_INS [dm3] 3R_30707074_INS [dm6]	T	TC	3.093e^-4	0.903	UPSTREAM CG31010 INTERGENIC
X	16465879	X_16465879_SNP [dm3] X_16571846_SNP [dm6]	G	A	3.093e^-4	0.903	INTRON CanA-14F
2R	12023662	2R_12023662_SNP [dm3] 2R_16136157_SNP [dm6]	T	A	3.119e^-4	0.903	INTRON spin
2R	11418437	2R_11418437_SNP [dm3] 2R_15530932_SNP [dm6]	C	G	3.132e^-4	0.903	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5908095	3L_5908095_SNP [dm3] 3L_5914995_SNP [dm6]	A	G	3.169e^-4	0.903	INTRON CG13288
3L	4083161	3L_4083161_SNP [dm3] 3L_4083161_SNP [dm6]	T	G	3.180e^-4	0.903	INTRON Gad1
2R	13122263	2R_13122263_SNP [dm3] 2R_17234758_SNP [dm6]	T	C	3.186e^-4	0.903	INTRON mbl
X	12513572	X_12513572_SNP [dm3] X_12619539_SNP [dm6]	T	G	3.204e^-4	0.903	INTRON CG11085
3L	17813383	3L_17813383_DEL [dm3] 3L_17820283_DEL [dm6]	GG	G	3.204e^-4	0.903	UPSTREAM Ir75b DOWNSTREAM Ir75c INTERGENIC
3L	1119472	3L_1119472_SNP [dm3] 3L_1119472_SNP [dm6]	G	A	3.212e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_cad
X	20338367	X_20338367_SNP [dm3] X_20467340_SNP [dm6]	G	A	3.214e^-4	0.903	UPSTREAM GstT3 DOWNSTREAM CG32506 INTERGENIC
3L	16766787	3L_16766787_SNP [dm3] 3L_16773687_SNP [dm6]	T	G	3.219e^-4	0.903	INTRON Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	16766792	3L_16766792_SNP [dm3] 3L_16773692_SNP [dm6]	G	T	3.219e^-4	0.903	INTRON Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	16766793	3L_16766793_SNP [dm3] 3L_16773693_SNP [dm6]	G	A	3.219e^-4	0.903	INTRON Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	2531094	3R_2531094_SNP [dm3] 3R_6705372_SNP [dm6]	T	A	3.228e^-4	0.903	DOWNSTREAM Ccp84Aa INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12023835	2R_12023835_SNP [dm3] 2R_16136330_SNP [dm6]	G	T	3.245e^-4	0.903	NON_SYNONYMOUS_CODING spin UTR_3_PRIME spin
3R	22897119	3R_22897119_SNP [dm3] 3R_27071397_SNP [dm6]	G	A	3.258e^-4	0.903	INTERGENIC
2L	4757956	2L_4757956_DEL [dm3] 2L_4757956_DEL [dm6]	AC	A	3.271e^-4	0.903	INTRON CG15630
3L	9868567	3L_9868567_SNP [dm3] 3L_9875467_SNP [dm6]	G	A	3.302e^-4	0.903	UPSTREAM CR45406 INTERGENIC
3L	17095479	3L_17095479_SNP [dm3] 3L_17102379_SNP [dm6]	G	A	3.304e^-4	0.903	INTRON Rbp6
X	9832281	X_9832281_SNP [dm3] X_9938248_SNP [dm6]	G	A	3.331e^-4	0.903	INTERGENIC
3L	4976903	3L_4976903_SNP [dm3] 3L_4976903_SNP [dm6]	T	A	3.337e^-4	0.903	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10398286	3L_10398286_SNP [dm3] 3L_10405186_SNP [dm6]	T	G	3.355e^-4	0.903	INTERGENIC
2L	5466076	2L_5466076_SNP [dm3] 2L_5466076_SNP [dm6]	G	A	3.359e^-4	0.903	SYNONYMOUS_CODING mid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16762461	3R_16762461_SNP [dm3] 3R_20936739_SNP [dm6]	G	C	3.395e^-4	0.903	INTRON CG31191
3R	9948317	3R_9948317_INS [dm3] 3R_14122595_INS [dm6]	T	TAATT	3.395e^-4	0.903	UPSTREAM twf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10716148	2R_10716148_SNP [dm3] 2R_14828643_SNP [dm6]	A	G	3.406e^-4	0.903	INTERGENIC
2R	11442766	2R_11442766_SNP [dm3] 2R_15555261_SNP [dm6]	C	G	3.406e^-4	0.903	UPSTREAM CG12963 INTERGENIC
3L	11689705	3L_11689705_SNP [dm3] 3L_11696605_SNP [dm6]	G	C	3.406e^-4	0.903	UPSTREAM CG11652 DOWNSTREAM CG6053 INTRON CG11652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	11689706	3L_11689706_SNP [dm3] 3L_11696606_SNP [dm6]	A	G	3.406e^-4	0.903	UPSTREAM CG11652 DOWNSTREAM CG6053 INTRON CG11652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	13316069	3L_13316069_SNP [dm3] 3L_13322969_SNP [dm6]	C	A	3.406e^-4	0.903	INTERGENIC
3R	14064292	3R_14064292_SNP [dm3] 3R_18238570_SNP [dm6]	G	A	3.409e^-4	0.903	SYNONYMOUS_CODING repo DOWNSTREAM CG7156	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22883245	3R_22883245_SNP [dm3] 3R_27057523_SNP [dm6]	T	G	3.427e^-4	0.903	DOWNSTREAM Nep5 & 1 other INTRON RYa-R
3R	24704867	3R_24704867_SNP [dm3] 3R_28879145_SNP [dm6]	T	A	3.427e^-4	0.903	NON_SYNONYMOUS_CODING CG14523 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24704900	3R_24704900_SNP [dm3] 3R_28879178_SNP [dm6]	G	T	3.427e^-4	0.903	NON_SYNONYMOUS_CODING CG14523 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24706167	3R_24706167_SNP [dm3] 3R_28880445_SNP [dm6]	T	A	3.427e^-4	0.903	UPSTREAM CG14527 & 1 other INTRON CG33203	TF binding site mE1_TFBS_cad
3R	24720424	3R_24720424_SNP [dm3] 3R_28894702_SNP [dm6]	G	A	3.427e^-4	0.903	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo
3R	9695415	3R_9695415_SNP [dm3] 3R_13869693_SNP [dm6]	A	G	3.427e^-4	0.903	INTRON E5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19019789	3R_19019789_SNP [dm3] 3R_23194067_SNP [dm6]	C	T	3.451e^-4	0.903	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	4732858	2L_4732858_SNP [dm3] 2L_4732858_SNP [dm6]	T	G	3.464e^-4	0.903	SYNONYMOUS_CODING CG15631
3R	26532792	3R_26532792_SNP [dm3] 3R_30707070_SNP [dm6]	C	T	3.510e^-4	0.903	UPSTREAM CG31010 INTERGENIC
2R	11653605	2R_11653605_SNP [dm3] 2R_15766100_SNP [dm6]	C	G	3.513e^-4	0.903	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9076302	3R_9076302_SNP [dm3] 3R_13250580_SNP [dm6]	A	T	3.516e^-4	0.903	INTRON Ace
2L	18230433	2L_18230433_SNP [dm3] 2L_18230433_SNP [dm6]	A	C	3.521e^-4	0.903	INTRON CG42750	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2919970	2L_2919970_SNP [dm3] 2L_2919970_SNP [dm6]	C	T	3.521e^-4	0.903	INTRON lilli
2L	3578806	2L_3578806_SNP [dm3] 2L_3578806_SNP [dm6]	T	G	3.521e^-4	0.903	INTRON sob	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	3578809	2L_3578809_SNP [dm3] 2L_3578809_SNP [dm6]	T	C	3.521e^-4	0.903	INTRON sob	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	769944	2L_769944_SNP [dm3] 2L_769944_SNP [dm6]	T	G	3.521e^-4	0.903	INTERGENIC
3R	3019746	3R_3019746_SNP [dm3] 3R_7194024_SNP [dm6]	G	A	3.523e^-4	0.903	INTRON lap
2R	16294650	2R_16294650_SNP [dm3] 2R_20407145_SNP [dm6]	G	A	3.542e^-4	0.903	INTERGENIC
2R	16294653	2R_16294653_SNP [dm3] 2R_20407148_SNP [dm6]	G	C	3.542e^-4	0.903	INTERGENIC
X	16997254	X_16997254_SNP [dm3] X_17103221_SNP [dm6]	C	T	3.542e^-4	0.903	SYNONYMOUS_CODING CG4991
2R	7255745	2R_7255745_SNP [dm3] 2R_11368240_SNP [dm6]	A	T	3.548e^-4	0.903	UPSTREAM CG13204 INTRON CG13204	TF binding site BDTNP1_TFBS_dl
3R	26363736	3R_26363736_SNP [dm3] 3R_30538014_SNP [dm6]	T	G	3.556e^-4	0.903	UPSTREAM tmod INTRON tmod
2L	6558215	2L_6558215_SNP [dm3] 2L_6558215_SNP [dm6]	A	G	3.566e^-4	0.903	UPSTREAM Osm6 INTRON CoVb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	8342537	3L_8342537_SNP [dm3] 3L_8349437_SNP [dm6]	G	A	3.583e^-4	0.903	SYNONYMOUS_CODING GAPcenA	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	10614692	3R_10614692_SNP [dm3] 3R_14788970_SNP [dm6]	T	A	3.588e^-4	0.903	SPLICE_SITE_REGION jvl INTRON jvl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8585351	3L_8585351_SNP [dm3] 3L_8592251_SNP [dm6]	C	G	3.599e^-4	0.903	SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18362735	2R_18362735_SNP [dm3] 2R_22475230_SNP [dm6]	G	T	3.617e^-4	0.903	SYNONYMOUS_CODING CG45062	TF binding site mE1_TFBS_chinmo
3L	10888831	3L_10888831_SNP [dm3] 3L_10895731_SNP [dm6]	C	T	3.617e^-4	0.903	UTR_3_PRIME Aps UPSTREAM CR45171
X	14694436	X_14694436_SNP [dm3] X_14800403_SNP [dm6]	G	A	3.617e^-4	0.903	SYNONYMOUS_CODING rut
3L	17818277	3L_17818277_SNP [dm3] 3L_17825177_SNP [dm6]	T	C	3.622e^-4	0.903	INTRON Grd
3L	11695673	3L_11695673_SNP [dm3] 3L_11702573_SNP [dm6]	T	C	3.629e^-4	0.903	INTRON CG11658
2L	7717821	2L_7717821_SNP [dm3] 2L_7717821_SNP [dm6]	A	G	3.637e^-4	0.903	INTRON CG13793
2L	13618702	2L_13618702_SNP [dm3] 2L_13618702_SNP [dm6]	T	G	3.651e^-4	0.903	INTRON kuz
2R	17730851	2R_17730851_SNP [dm3] 2R_21843346_SNP [dm6]	T	C	3.651e^-4	0.903	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6290630	2R_6290630_SNP [dm3] 2R_10403125_SNP [dm6]	A	G	3.658e^-4	0.903	INTRON CG42732
3L	10466162	3L_10466162_DEL [dm3] 3L_10473062_DEL [dm6]	TT	T	3.669e^-4	0.903	INTERGENIC
X	12513597	X_12513597_INS [dm3] X_12619564_INS [dm6]	G	TGCATA	3.682e^-4	0.903	INTRON CG11085
2L	20073406	2L_20073406_SNP [dm3] 2L_20073406_SNP [dm6]	T	C	3.690e^-4	0.903	SYNONYMOUS_CODING bwa UTR_3_PRIME bwa DOWNSTREAM pr
2L	14039815	2L_14039815_SNP [dm3] 2L_14039815_SNP [dm6]	C	T	3.696e^-4	0.903	UPSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	14788411	3R_14788411_DEL [dm3] 3R_18962689_DEL [dm6]	GG	C	3.704e^-4	0.903	INTRON CG42613 & 1 other
3L	866923	3L_866923_SNP [dm3] 3L_866923_SNP [dm6]	T	C	3.707e^-4	0.903	INTRON CG12502	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	866926	3L_866926_SNP [dm3] 3L_866926_SNP [dm6]	A	C	3.707e^-4	0.903	INTRON CG12502	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2836195	2L_2836195_SNP [dm3] 2L_2836195_SNP [dm6]	A	G	3.762e^-4	0.903	INTRON CG3119
3R	18471586	3R_18471586_INS [dm3] 3R_22645864_INS [dm6]	G	TA	3.775e^-4	0.903	INTRON CG45058
2R	17902064	2R_17902064_SNP [dm3] 2R_22014559_SNP [dm6]	T	C	3.794e^-4	0.903	INTRON CG34370
2R	13906616	2R_13906616_SNP [dm3] 2R_18019111_SNP [dm6]	T	A	3.794e^-4	0.903	SYNONYMOUS_CODING CG5084	TF binding site mE1_TFBS_cad
2R	7526499	2R_7526499_SNP [dm3] 2R_11638994_SNP [dm6]	C	T	3.832e^-4	0.903	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19674926	2R_19674926_SNP [dm3] 2R_23787403_SNP [dm6]	G	A	3.835e^-4	0.903	INTRON CG9850
3L	7512907	3L_7512907_SNP [dm3] 3L_7519807_SNP [dm6]	G	A	3.835e^-4	0.903	SYNONYMOUS_CODING ltl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9724186	3L_9724186_SNP [dm3] 3L_9731086_SNP [dm6]	A	C	3.835e^-4	0.903	SYNONYMOUS_CODING ATPsyn-b DOWNSTREAM CG6749	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9726266	3L_9726266_SNP [dm3] 3L_9733166_SNP [dm6]	C	T	3.835e^-4	0.903	SYNONYMOUS_CODING CG6749 DOWNSTREAM mir-4986 & 1 other
3R	25370839	3R_25370839_SNP [dm3] 3R_29545117_SNP [dm6]	G	A	3.844e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24704886	3R_24704886_SNP [dm3] 3R_28879164_SNP [dm6]	A	C	3.846e^-4	0.903	SYNONYMOUS_CODING CG14523 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12026446	2R_12026446_SNP [dm3] 2R_16138941_SNP [dm6]	G	A	3.850e^-4	0.903	DOWNSTREAM spin INTRON Got1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7223452	2R_7223452_SNP [dm3] 2R_11335947_SNP [dm6]	T	C	3.868e^-4	0.903	SYNONYMOUS_CODING sha UPSTREAM lambdaTry	TF binding site mE1_TFBS_cad
2L	13248746	2L_13248746_SNP [dm3] 2L_13248746_SNP [dm6]	T	C	3.869e^-4	0.903	INTRON CG16820
2L	9845176	2L_9845176_SNP [dm3] 2L_9845176_SNP [dm6]	A	G	3.873e^-4	0.903	INTRON nAChRalpha6
2R	7765870	2R_7765870_SNP [dm3] 2R_11878365_SNP [dm6]	T	G	3.877e^-4	0.903	NON_SYNONYMOUS_CODING CG13185
3R	21339789	3R_21339789_SNP [dm3] 3R_25514067_SNP [dm6]	C	T	3.877e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6009400	3R_6009400_DEL [dm3] 3R_10183678_DEL [dm6]	CCCAAAAAGCCCTGGGCTTC...	C	3.877e^-4	0.903	INTRON CG12814
3R	6009461	3R_6009461_DEL [dm3] 3R_10183739_DEL [dm6]	GG	G	3.877e^-4	0.903	INTRON CG12814
3R	9839847	3R_9839847_SNP [dm3] 3R_14014125_SNP [dm6]	C	G	3.877e^-4	0.903	INTRON rdx	TF binding site BDTNP1_TFBS_dl
3R	12541603	3R_12541603_SNP [dm3] 3R_16715881_SNP [dm6]	T	A	3.929e^-4	0.903	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25134623	3R_25134623_SNP [dm3] 3R_29308901_SNP [dm6]	C	T	3.929e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	9695395	3R_9695395_SNP [dm3] 3R_13869673_SNP [dm6]	T	C	3.929e^-4	0.903	INTRON E5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19336947	3L_19336947_SNP [dm3] 3L_19343847_SNP [dm6]	T	G	3.975e^-4	0.903	INTRON CG32206
3L	19336948	3L_19336948_SNP [dm3] 3L_19343848_SNP [dm6]	G	T	3.975e^-4	0.903	INTRON CG32206
2L	9272711	2L_9272711_SNP [dm3] 2L_9272711_SNP [dm6]	C	T	3.980e^-4	0.903	INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
2L	7375826	2L_7375826_SNP [dm3] 2L_7375826_SNP [dm6]	T	C	3.981e^-4	0.903	SPLICE_SITE_REGION Wnt10 INTRON Wnt10
2L	11052635	2L_11052635_SNP [dm3] 2L_11052635_SNP [dm6]	A	T	4.019e^-4	0.903	INTRON Samuel
2L	11052637	2L_11052637_SNP [dm3] 2L_11052637_SNP [dm6]	G	A	4.019e^-4	0.903	INTRON Samuel
2L	11052638	2L_11052638_SNP [dm3] 2L_11052638_SNP [dm6]	C	T	4.019e^-4	0.903	INTRON Samuel
2R	15668507	2R_15668507_DEL [dm3] 2R_19781002_DEL [dm6]	GTTA	T	4.047e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16891400	3R_16891400_SNP [dm3] 3R_21065678_SNP [dm6]	T	G	4.082e^-4	0.903	UPSTREAM AnxB9 INTRON AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	19484520	X_19484520_SNP [dm3] X_19590487_SNP [dm6]	C	T	4.082e^-4	0.903	UPSTREAM CG14219 INTERGENIC
3R	16756693	3R_16756693_SNP [dm3] 3R_20930971_SNP [dm6]	C	A	4.082e^-4	0.903	INTRON CG31191
2R	9515731	2R_9515731_SNP [dm3] 2R_13628226_SNP [dm6]	A	G	4.082e^-4	0.903	INTRON fas
2L	9122445	2L_9122445_SNP [dm3] 2L_9122445_SNP [dm6]	C	G	4.085e^-4	0.903	UPSTREAM CR44616 INTERGENIC
X	12507987	X_12507987_SNP [dm3] X_12613954_SNP [dm6]	C	T	4.085e^-4	0.903	DOWNSTREAM CR45621 INTRON CG2543 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9092961	2R_9092961_SNP [dm3] 2R_13205456_SNP [dm6]	C	A	4.089e^-4	0.903	UPSTREAM lat INTRON lat & 1 other	TF binding site BDTNP1_TFBS_dl
3R	9657409	3R_9657409_SNP [dm3] 3R_13831687_SNP [dm6]	C	T	4.091e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12163946	2R_12163946_SNP [dm3] 2R_16276441_SNP [dm6]	T	C	4.096e^-4	0.903	NON_SYNONYMOUS_CODING CG33017
2R	12163992	2R_12163992_SNP [dm3] 2R_16276487_SNP [dm6]	T	A	4.096e^-4	0.903	SYNONYMOUS_CODING CG33017
2L	6556944	2L_6556944_SNP [dm3] 2L_6556944_SNP [dm6]	C	A	4.105e^-4	0.903	NON_SYNONYMOUS_CODING Osm6 UPSTREAM CoVb	TF binding site mE1_TFBS_cad
3R	22696144	3R_22696144_INS [dm3] 3R_26870422_INS [dm6]	T	TTAGAATTATATT...	4.107e^-4	0.903	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	12079010	3L_12079010_SNP [dm3] 3L_12085910_SNP [dm6]	T	C	4.118e^-4	0.903	INTERGENIC
2L	16450431	2L_16450431_SNP [dm3] 2L_16450431_SNP [dm6]	T	C	4.121e^-4	0.903	SYNONYMOUS_CODING Idgf2 UPSTREAM Idgf3
2L	6556566	2L_6556566_SNP [dm3] 2L_6556566_SNP [dm6]	C	T	4.121e^-4	0.903	SYNONYMOUS_CODING Osm6	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6558515	2L_6558515_SNP [dm3] 2L_6558515_SNP [dm6]	C	T	4.121e^-4	0.903	SYNONYMOUS_CODING CoVb UPSTREAM CG11043 DOWNSTREAM CG9596	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	5431562	3L_5431562_SNP [dm3] 3L_5438462_SNP [dm6]	C	T	4.125e^-4	0.903	INTRON CG34391
2L	18183080	2L_18183080_SNP [dm3] 2L_18183080_SNP [dm6]	C	T	4.145e^-4	0.903	SYNONYMOUS_CODING CG7180 INTRON CG42750
2R	16186587	2R_16186587_SNP [dm3] 2R_20299082_SNP [dm6]	G	T	4.165e^-4	0.903	INTERGENIC
X	10487234	X_10487234_SNP [dm3] X_10593201_SNP [dm6]	G	A	4.165e^-4	0.903	NON_SYNONYMOUS_CODING Hmr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4292804	2L_4292804_INS [dm3] 2L_4292804_INS [dm6]	A	AA	4.165e^-4	0.903	INTRON tutl
2L	7254663	2L_7254663_SNP [dm3] 2L_7254663_SNP [dm6]	G	T	4.192e^-4	0.903	DOWNSTREAM Wnt4 INTERGENIC
3R	19710863	3R_19710863_SNP [dm3] 3R_23885141_SNP [dm6]	G	A	4.197e^-4	0.903	INTRON Pli	TF binding site mE1_TFBS_GATAe
3L	9723754	3L_9723754_SNP [dm3] 3L_9730654_SNP [dm6]	C	A	4.202e^-4	0.903	DOWNSTREAM CG6749 INTRON ATPsyn-b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2856844	2L_2856844_SNP [dm3] 2L_2856844_SNP [dm6]	A	G	4.214e^-4	0.903	UTR_3_PRIME RpS21 UPSTREAM CG2991 DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
3R	13969180	3R_13969180_SNP [dm3] 3R_18143458_SNP [dm6]	A	G	4.227e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9822886	3R_9822886_SNP [dm3] 3R_13997164_SNP [dm6]	C	A	4.227e^-4	0.903	INTRON rdx
3R	9822887	3R_9822887_SNP [dm3] 3R_13997165_SNP [dm6]	T	C	4.227e^-4	0.903	INTRON rdx
2L	9500349	2L_9500349_SNP [dm3] 2L_9500349_SNP [dm6]	T	G	4.236e^-4	0.903	INTRON CG33298
X	2662384	X_2662384_INS [dm3] X_2768351_INS [dm6]	G	TT	4.247e^-4	0.903	INTRON kirre
2R	8924130	2R_8924130_SNP [dm3] 2R_13036625_SNP [dm6]	A	T	4.248e^-4	0.903	INTERGENIC
2L	10567301	2L_10567301_SNP [dm3] 2L_10567301_SNP [dm6]	C	T	4.284e^-4	0.903	UTR_5_PRIME CG6138 INTRON Trim9
2R	8339597	2R_8339597_SNP [dm3] 2R_12452092_SNP [dm6]	G	A	4.289e^-4	0.903	UTR_3_PRIME Dyb DOWNSTREAM Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	5864609	3L_5864609_SNP [dm3] 3L_5871509_SNP [dm6]	A	T	4.296e^-4	0.903	UTR_5_PRIME CG5568
X	14042362	X_14042362_SNP [dm3] X_14148329_SNP [dm6]	A	G	4.296e^-4	0.903	INTERGENIC
3L	5431564	3L_5431564_INS [dm3] 3L_5438464_INS [dm6]	C	CACTCTC	4.302e^-4	0.903	INTRON CG34391
3L	7795211	3L_7795211_DEL [dm3] 3L_7802111_DEL [dm6]	TATAT	T	4.305e^-4	0.903	INTRON CG32369
3L	9723497	3L_9723497_SNP [dm3] 3L_9730397_SNP [dm6]	C	T	4.324e^-4	0.903	SYNONYMOUS_CODING ATPsyn-b DOWNSTREAM Naa60 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4026898	3R_4026898_DEL [dm3] 3R_8201176_DEL [dm6]	TA	T	4.326e^-4	0.903	UPSTREAM CR43303 INTERGENIC	TF binding site mE1_TFBS_cad
X	14782039	X_14782039_DEL [dm3] X_14888006_DEL [dm6]	CTACTCTTCTAATATTTGTA...	C	4.357e^-4	0.903	INTRON Flo2 & 1 other
3L	1606258	3L_1606258_SNP [dm3] 3L_1606258_SNP [dm6]	G	C	4.402e^-4	0.903	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2923071	X_2923071_DEL [dm3] X_3029038_DEL [dm6]	TT	T	4.406e^-4	0.903	INTRON kirre
2R	13495831	2R_13495831_SNP [dm3] 2R_17608326_SNP [dm6]	T	C	4.426e^-4	0.903	NON_SYNONYMOUS_CODING CG10936
X	5038017	X_5038017_SNP [dm3] X_5143984_SNP [dm6]	T	G	4.426e^-4	0.903	INTRON rg & 1 other
X	5038018	X_5038018_SNP [dm3] X_5143985_SNP [dm6]	G	T	4.426e^-4	0.903	INTRON rg & 1 other
X	5038020	X_5038020_SNP [dm3] X_5143987_SNP [dm6]	A	C	4.426e^-4	0.903	INTRON rg & 1 other
3L	17816835	3L_17816835_SNP [dm3] 3L_17823735_SNP [dm6]	G	C	4.467e^-4	0.903	UPSTREAM Ir75c INTRON Grd
3L	9724718	3L_9724718_SNP [dm3] 3L_9731618_SNP [dm6]	C	G	4.482e^-4	0.903	SYNONYMOUS_CODING CG6749 DOWNSTREAM ATPsyn-b	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2856583	2L_2856583_SNP [dm3] 2L_2856583_SNP [dm6]	G	A	4.491e^-4	0.903	UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15202300	3R_15202300_SNP [dm3] 3R_19376578_SNP [dm6]	T	G	4.497e^-4	0.903	SYNONYMOUS_CODING CG31245 UPSTREAM CG31404 INTRON Ino80	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9586230	2L_9586230_SNP [dm3] 2L_9586230_SNP [dm6]	G	T	4.520e^-4	0.903	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
2L	4794191	2L_4794191_SNP [dm3] 2L_4794191_SNP [dm6]	A	T	4.535e^-4	0.903	UPSTREAM CG3294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15319227	3R_15319227_SNP [dm3] 3R_19493505_SNP [dm6]	T	A	4.548e^-4	0.903	INTRON Dys
2R	9488835	2R_9488835_SNP [dm3] 2R_13601330_SNP [dm6]	T	C	4.559e^-4	0.903	UPSTREAM CG43058 INTERGENIC
2L	6557719	2L_6557719_SNP [dm3] 2L_6557719_SNP [dm6]	C	A	4.562e^-4	0.903	UPSTREAM CoVb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24656621	3R_24656621_SNP [dm3] 3R_28830899_SNP [dm6]	C	T	4.578e^-4	0.903	INTRON WASp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	24656626	3R_24656626_SNP [dm3] 3R_28830904_SNP [dm6]	A	G	4.578e^-4	0.903	INTRON WASp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	12513570	X_12513570_SNP [dm3] X_12619537_SNP [dm6]	A	T	4.587e^-4	0.903	INTRON CG11085
3R	25800889	3R_25800889_SNP [dm3] 3R_29975167_SNP [dm6]	G	A	4.588e^-4	0.903	INTERGENIC
3L	1291026	3L_1291026_SNP [dm3] 3L_1291026_SNP [dm6]	C	T	4.601e^-4	0.903	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1291053	3L_1291053_SNP [dm3] 3L_1291053_SNP [dm6]	A	G	4.601e^-4	0.903	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1291092	3L_1291092_SNP [dm3] 3L_1291092_SNP [dm6]	G	A	4.601e^-4	0.903	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20280114	3L_20280114_SNP [dm3] 3L_20287014_SNP [dm6]	A	G	4.634e^-4	0.903	INTRON gogo
3R	17813282	3R_17813282_SNP [dm3] 3R_21987560_SNP [dm6]	A	C	4.634e^-4	0.903	INTRON Eip93F
2R	16071915	2R_16071915_SNP [dm3] 2R_20184410_SNP [dm6]	C	A	4.659e^-4	0.903	INTERGENIC
2R	17011357	2R_17011357_SNP [dm3] 2R_21123852_SNP [dm6]	C	T	4.659e^-4	0.903	UTR_3_PRIME CG4050 DOWNSTREAM ktub
2R	5443865	2R_5443865_SNP [dm3] 2R_9556360_SNP [dm6]	C	T	4.701e^-4	0.903	INTERGENIC
3L	1605659	3L_1605659_SNP [dm3] 3L_1605659_SNP [dm6]	A	T	4.711e^-4	0.903	SPLICE_SITE_REGION CG18170 & 1 other SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170
3L	1607425	3L_1607425_SNP [dm3] 3L_1607425_SNP [dm6]	C	T	4.711e^-4	0.903	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17817133	3L_17817133_SNP [dm3] 3L_17824033_SNP [dm6]	G	A	4.711e^-4	0.903	INTRON Grd
3L	19263322	3L_19263322_SNP [dm3] 3L_19270222_SNP [dm6]	T	G	4.711e^-4	0.903	NON_SYNONYMOUS_CODING CG14088 INTRON CG14085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19263323	3L_19263323_SNP [dm3] 3L_19270223_SNP [dm6]	A	G	4.711e^-4	0.903	SYNONYMOUS_CODING CG14088 INTRON CG14085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19263504	3L_19263504_SNP [dm3] 3L_19270404_SNP [dm6]	A	G	4.711e^-4	0.903	NON_SYNONYMOUS_CODING CG14088 INTRON CG14085	TF binding site mE1_TFBS_cad
3L	4310139	3L_4310139_SNP [dm3] 3L_4310139_SNP [dm6]	G	A	4.711e^-4	0.903	INTERGENIC
3R	24707407	3R_24707407_SNP [dm3] 3R_28881685_SNP [dm6]	A	T	4.711e^-4	0.903	NON_SYNONYMOUS_CODING CG14527 INTRON CG33203
2R	14604381	2R_14604381_SNP [dm3] 2R_18716876_SNP [dm6]	G	A	4.724e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14604394	2R_14604394_SNP [dm3] 2R_18716889_SNP [dm6]	A	T	4.724e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6434107	X_6434107_SNP [dm3] X_6540074_SNP [dm6]	A	G	4.724e^-4	0.903	UPSTREAM CG34417 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6434109	X_6434109_SNP [dm3] X_6540076_SNP [dm6]	G	A	4.724e^-4	0.903	UPSTREAM CG34417 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6434120	X_6434120_SNP [dm3] X_6540087_SNP [dm6]	A	G	4.724e^-4	0.903	UPSTREAM CG34417 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	7905397	X_7905397_SNP [dm3] X_8011364_SNP [dm6]	A	T	4.724e^-4	0.903	INTRON Tbh
2L	2856657	2L_2856657_SNP [dm3] 2L_2856657_SNP [dm6]	G	C	4.725e^-4	0.903	UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	13957640	2L_13957640_SNP [dm3] 2L_13957640_SNP [dm6]	T	G	4.730e^-4	0.903	UTR_5_PRIME NimA UPSTREAM NimA
3R	16756671	3R_16756671_SNP [dm3] 3R_20930949_SNP [dm6]	A	G	4.733e^-4	0.903	SPLICE_SITE_REGION CG31191 INTRON CG31191
2L	10322884	2L_10322884_SNP [dm3] 2L_10322884_SNP [dm6]	G	A	4.746e^-4	0.903	UPSTREAM CG4995 INTRON CG5381 & 1 other
2L	10322900	2L_10322900_SNP [dm3] 2L_10322900_SNP [dm6]	G	T	4.746e^-4	0.903	UTR_5_PRIME CG5381 UPSTREAM CG4995 INTRON CG4995
2L	3575169	2L_3575169_SNP [dm3] 2L_3575169_SNP [dm6]	A	G	4.746e^-4	0.903	UPSTREAM CR43822 INTERGENIC
2L	3575175	2L_3575175_SNP [dm3] 2L_3575175_SNP [dm6]	C	G	4.746e^-4	0.903	UPSTREAM CR43822 INTERGENIC
2L	3575176	2L_3575176_SNP [dm3] 2L_3575176_SNP [dm6]	T	C	4.746e^-4	0.903	UPSTREAM CR43822 INTERGENIC
2L	3575178	2L_3575178_SNP [dm3] 2L_3575178_SNP [dm6]	T	C	4.746e^-4	0.903	UPSTREAM CR43822 INTERGENIC
2L	3575190	2L_3575190_INS [dm3] 2L_3575190_INS [dm6]	T	TATTTT	4.746e^-4	0.903	UPSTREAM CR43822 INTERGENIC
2L	3575192	2L_3575192_SNP [dm3] 2L_3575192_SNP [dm6]	C	T	4.746e^-4	0.903	UPSTREAM CR43822 INTERGENIC
2L	3575193	2L_3575193_SNP [dm3] 2L_3575193_SNP [dm6]	G	A	4.746e^-4	0.903	UPSTREAM CR43822 INTERGENIC
2L	3575203	2L_3575203_SNP [dm3] 2L_3575203_SNP [dm6]	T	A	4.746e^-4	0.903	UPSTREAM CR43822 INTERGENIC
2L	8798398	2L_8798398_SNP [dm3] 2L_8798398_SNP [dm6]	C	G	4.749e^-4	0.903	INTERGENIC
2L	12285769	2L_12285769_SNP [dm3] 2L_12285769_SNP [dm6]	G	A	4.778e^-4	0.903	INTRON aret
2L	5663599	2L_5663599_SNP [dm3] 2L_5663599_SNP [dm6]	G	T	4.778e^-4	0.903	INTRON Hsp60C
2L	5893195	2L_5893195_SNP [dm3] 2L_5893195_SNP [dm6]	G	T	4.778e^-4	0.903	NON_SYNONYMOUS_CODING Acp26Aa UPSTREAM Acp26Ab	TF binding site mE1_TFBS_sens
2L	5893196	2L_5893196_SNP [dm3] 2L_5893196_SNP [dm6]	C	A	4.778e^-4	0.903	NON_SYNONYMOUS_CODING Acp26Aa UPSTREAM Acp26Ab	TF binding site mE1_TFBS_sens
2L	10939913	2L_10939913_SNP [dm3] 2L_10939913_SNP [dm6]	A	C	4.804e^-4	0.903	INTRON dpr2
3L	10398296	3L_10398296_SNP [dm3] 3L_10405196_SNP [dm6]	T	C	4.857e^-4	0.903	INTERGENIC
3R	18081941	3R_18081941_SNP [dm3] 3R_22256219_SNP [dm6]	G	A	4.867e^-4	0.903	INTRON SKIP	TF binding site mE1_TFBS_chinmo
2R	7766019	2R_7766019_SNP [dm3] 2R_11878514_SNP [dm6]	C	G	4.889e^-4	0.903	INTRON CG13185
2R	8442201	2R_8442201_SNP [dm3] 2R_12554696_SNP [dm6]	A	G	4.902e^-4	0.903	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
3L	2835560	3L_2835560_SNP [dm3] 3L_2835560_SNP [dm6]	C	T	4.902e^-4	0.903	INTRON CG43444
3R	22898062	3R_22898062_SNP [dm3] 3R_27072340_SNP [dm6]	T	C	4.902e^-4	0.903	INTERGENIC
2R	14230121	2R_14230121_SNP [dm3] 2R_18342616_SNP [dm6]	C	G	4.916e^-4	0.903	INTRON sbb
2R	6539323	2R_6539323_SNP [dm3] 2R_10651818_SNP [dm6]	A	T	4.917e^-4	0.903	INTERGENIC
X	1224481	X_1224481_SNP [dm3] X_1330448_SNP [dm6]	G	A	4.917e^-4	0.903	SYNONYMOUS_CODING CG11409	TF binding site mE1_TFBS_chinmo
X	9585721	X_9585721_SNP [dm3] X_9691688_SNP [dm6]	G	A	4.917e^-4	0.903	EXON CR44016	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
X	9585733	X_9585733_INS [dm3] X_9691700_INS [dm6]	C	CAT	4.917e^-4	0.903	EXON CR44016	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
X	3893708	X_3893708_SNP [dm3] X_3999675_SNP [dm6]	G	C	4.930e^-4	0.903	INTERGENIC
X	12295409	X_12295409_SNP [dm3] X_12401376_SNP [dm6]	G	C	4.938e^-4	0.903	INTERGENIC
3L	8232151	3L_8232151_INS [dm3] 3L_8239051_INS [dm6]	T	TGTT	4.948e^-4	0.903	INTRON CG7213 & 1 other
2L	9818895	2L_9818895_SNP [dm3] 2L_9818895_SNP [dm6]	A	G	4.987e^-4	0.903	INTRON nAChRalpha6
2R	7765906	2R_7765906_SNP [dm3] 2R_11878401_SNP [dm6]	A	T	4.989e^-4	0.903	NON_SYNONYMOUS_CODING CG13185
3L	20567004	3L_20567004_SNP [dm3] 3L_20573904_SNP [dm6]	C	G	5.012e^-4	0.903	INTERGENIC
3R	14707357	3R_14707357_SNP [dm3] 3R_18881635_SNP [dm6]	T	G	5.032e^-4	0.903	INTERGENIC
2L	14915287	2L_14915287_SNP [dm3] 2L_14915287_SNP [dm6]	G	T	5.035e^-4	0.903	INTRON CG42313
3L	10822228	3L_10822228_SNP [dm3] 3L_10829128_SNP [dm6]	C	T	5.069e^-4	0.903	INTERGENIC
2R	8784973	2R_8784973_SNP [dm3] 2R_12897468_SNP [dm6]	T	C	5.136e^-4	0.903	INTRON vg
2R	8785011	2R_8785011_SNP [dm3] 2R_12897506_SNP [dm6]	A	G	5.136e^-4	0.903	INTRON vg
2R	8785013	2R_8785013_SNP [dm3] 2R_12897508_SNP [dm6]	A	C	5.136e^-4	0.903	INTRON vg
2L	9031516	2L_9031516_SNP [dm3] 2L_9031516_SNP [dm6]	G	A	5.138e^-4	0.903	INTRON CG9582 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23470074	3R_23470074_SNP [dm3] 3R_27644352_SNP [dm6]	A	G	5.164e^-4	0.903	INTRON tau
3R	24206356	3R_24206356_SNP [dm3] 3R_28380634_SNP [dm6]	C	A	5.165e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	2431577	3L_2431577_SNP [dm3] 3L_2431577_SNP [dm6]	T	G	5.171e^-4	0.903	INTRON CG45186
3L	2431610	3L_2431610_SNP [dm3] 3L_2431610_SNP [dm6]	C	A	5.171e^-4	0.903	INTRON CG45186
2R	17612133	2R_17612133_SNP [dm3] 2R_21724628_SNP [dm6]	A	T	5.180e^-4	0.903	DOWNSTREAM LBR INTERGENIC
3R	20530784	3R_20530784_SNP [dm3] 3R_24705062_SNP [dm6]	C	A	5.189e^-4	0.903	INTRON slo
2L	3165294	2L_3165294_INS [dm3] 2L_3165294_INS [dm6]	A	AA	5.198e^-4	0.903	INTRON Hydr2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3532136	2L_3532136_SNP [dm3] 2L_3532136_SNP [dm6]	A	G	5.198e^-4	0.903	INTRON Che-13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	6414429	2L_6414429_SNP [dm3] 2L_6414429_SNP [dm6]	A	G	5.198e^-4	0.903	UTR_3_PRIME CG13982 DOWNSTREAM Tig & 1 other
2L	6414431	2L_6414431_SNP [dm3] 2L_6414431_SNP [dm6]	T	A	5.198e^-4	0.903	UTR_3_PRIME CG13982 DOWNSTREAM Tig & 1 other
2L	7254675	2L_7254675_SNP [dm3] 2L_7254675_SNP [dm6]	A	C	5.198e^-4	0.903	DOWNSTREAM Wnt4 INTERGENIC
2L	18219571	2L_18219571_SNP [dm3] 2L_18219571_SNP [dm6]	A	G	5.237e^-4	0.903	INTRON CG42750
2L	18219752	2L_18219752_SNP [dm3] 2L_18219752_SNP [dm6]	A	T	5.237e^-4	0.903	INTRON CG42750
2L	18240063	2L_18240063_SNP [dm3] 2L_18240063_SNP [dm6]	A	C	5.237e^-4	0.903	INTRON CG42750
2L	18240301	2L_18240301_DEL [dm3] 2L_18240301_DEL [dm6]	AGTTTACCGGAA...	A	5.237e^-4	0.903	INTRON CG42750
2L	18240417	2L_18240417_SNP [dm3] 2L_18240417_SNP [dm6]	A	G	5.237e^-4	0.903	INTRON CG42750
3R	19018025	3R_19018025_SNP [dm3] 3R_23192303_SNP [dm6]	G	T	5.245e^-4	0.903	INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	23147067	3R_23147067_SNP [dm3] 3R_27321345_SNP [dm6]	A	C	5.245e^-4	0.903	INTRON CG3339
2R	15843109	2R_15843109_SNP [dm3] 2R_19955604_SNP [dm6]	T	A	5.252e^-4	0.903	UPSTREAM CG44623 DOWNSTREAM CG44622 INTERGENIC
3L	16169020	3L_16169020_SNP [dm3] 3L_16175920_SNP [dm6]	T	A	5.256e^-4	0.903	UPSTREAM CR45754 INTERGENIC
2L	9272676	2L_9272676_SNP [dm3] 2L_9272676_SNP [dm6]	A	C	5.264e^-4	0.903	INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
3R	11963797	3R_11963797_SNP [dm3] 3R_16138075_SNP [dm6]	T	G	5.278e^-4	0.903	INTRON Sb	TF binding site mE1_TFBS_inv
2R	11418276	2R_11418276_SNP [dm3] 2R_15530771_SNP [dm6]	T	A	5.299e^-4	0.903	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad
2R	11418298	2R_11418298_SNP [dm3] 2R_15530793_SNP [dm6]	C	A	5.299e^-4	0.903	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11418431	2R_11418431_SNP [dm3] 2R_15530926_SNP [dm6]	G	T	5.299e^-4	0.903	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11418492	2R_11418492_SNP [dm3] 2R_15530987_SNP [dm6]	T	C	5.299e^-4	0.903	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16190303	3L_16190303_SNP [dm3] 3L_16197203_SNP [dm6]	C	G	5.322e^-4	0.903	UPSTREAM CG33687 EXON CR45437
2R	13901891	2R_13901891_SNP [dm3] 2R_18014386_SNP [dm6]	G	A	5.338e^-4	0.903	INTERGENIC
3L	7150939	3L_7150939_SNP [dm3] 3L_7157839_SNP [dm6]	G	T	5.339e^-4	0.903	UPSTREAM corn & 1 other INTERGENIC
X	9491280	X_9491280_SNP [dm3] X_9597247_SNP [dm6]	A	T	5.339e^-4	0.903	INTERGENIC
2L	5860166	2L_5860166_SNP [dm3] 2L_5860166_SNP [dm6]	C	T	5.349e^-4	0.903	UTR_3_PRIME rau	TF binding site mE1_TFBS_cad
X	3093244	X_3093244_SNP [dm3] X_3199211_SNP [dm6]	A	G	5.358e^-4	0.903	INTRON dnc
2L	8792644	2L_8792644_SNP [dm3] 2L_8792644_SNP [dm6]	C	T	5.398e^-4	0.903	INTERGENIC
2L	3320552	2L_3320552_SNP [dm3] 2L_3320552_SNP [dm6]	T	C	5.400e^-4	0.903	UTR_5_PRIME CG8837 UPSTREAM CG3326
3L	6812395	3L_6812395_SNP [dm3] 3L_6819295_SNP [dm6]	C	T	5.415e^-4	0.903	INTERGENIC
2L	6328757	2L_6328757_SNP [dm3] 2L_6328757_SNP [dm6]	C	T	5.433e^-4	0.903	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad
2R	7612908	2R_7612908_SNP [dm3] 2R_11725403_SNP [dm6]	G	A	5.510e^-4	0.903	SYNONYMOUS_CODING pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	9122369	2L_9122369_SNP [dm3] 2L_9122369_SNP [dm6]	T	C	5.527e^-4	0.903	UPSTREAM CR44616 INTERGENIC
3R	17821110	3R_17821110_SNP [dm3] 3R_21995388_SNP [dm6]	G	A	5.529e^-4	0.903	INTRON Eip93F
3R	20526972	3R_20526972_SNP [dm3] 3R_24701250_SNP [dm6]	G	T	5.529e^-4	0.903	INTRON slo
3R	20900530	3R_20900530_SNP [dm3] 3R_25074808_SNP [dm6]	C	A	5.529e^-4	0.903	UPSTREAM CG11920 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20900531	3R_20900531_SNP [dm3] 3R_25074809_SNP [dm6]	C	A	5.529e^-4	0.903	UPSTREAM CG11920 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24715623	3R_24715623_SNP [dm3] 3R_28889901_SNP [dm6]	C	G	5.529e^-4	0.903	INTRON Doa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	24716227	3R_24716227_INS [dm3] 3R_28890505_INS [dm6]	T	TTGAATGGGTATATCCCGAT...	5.529e^-4	0.903	INTRON Doa
3R	6864623	3R_6864623_SNP [dm3] 3R_11038901_SNP [dm6]	G	C	5.529e^-4	0.903	INTRON CG34114	TF binding site mE1_TFBS_inv
2L	3388113	2L_3388113_SNP [dm3] 2L_3388113_SNP [dm6]	T	G	5.540e^-4	0.903	NON_SYNONYMOUS_CODING CG42460 UPSTREAM CR45301 & 1 other
3L	22366454	3L_22366454_SNP [dm3] 3L_22373354_SNP [dm6]	C	T	5.606e^-4	0.903	INTRON Ten-m	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12409603	X_12409603_SNP [dm3] X_12515570_SNP [dm6]	A	C	5.616e^-4	0.903	INTRON CG2556
3L	16740346	3L_16740346_SNP [dm3] 3L_16747246_SNP [dm6]	T	C	5.617e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	763098	2L_763098_SNP [dm3] 2L_763098_SNP [dm6]	A	G	5.620e^-4	0.903	DOWNSTREAM GABA-B-R3 INTERGENIC
X	9974186	X_9974186_SNP [dm3] X_10080153_SNP [dm6]	G	A	5.622e^-4	0.903	SYNONYMOUS_CODING ZAP3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	22727238	3R_22727238_SNP [dm3] 3R_26901516_SNP [dm6]	A	G	5.628e^-4	0.903	INTRON T48	regulatory region REDfly_CRMs
X	7261792	X_7261792_SNP [dm3] X_7367759_SNP [dm6]	C	A	5.631e^-4	0.903	INTRON CG1677 & 1 other
X	17150214	X_17150214_SNP [dm3] X_17256181_SNP [dm6]	A	C	5.646e^-4	0.903	INTRON f
X	12295860	X_12295860_SNP [dm3] X_12401827_SNP [dm6]	G	C	5.653e^-4	0.903	INTERGENIC
X	19724655	X_19724655_SNP [dm3] X_19830622_SNP [dm6]	C	A	5.653e^-4	0.903	UTR_3_PRIME pico DOWNSTREAM pico
2R	11423982	2R_11423982_SNP [dm3] 2R_15536477_SNP [dm6]	A	T	5.671e^-4	0.903	INTRON CG30471
2L	18139788	2L_18139788_SNP [dm3] 2L_18139788_SNP [dm6]	C	T	5.682e^-4	0.903	SYNONYMOUS_CODING Socs36E UTR_3_PRIME Socs36E	TF binding site mE1_TFBS_cad
3L	14334563	3L_14334563_SNP [dm3] 3L_14341463_SNP [dm6]	A	T	5.686e^-4	0.903	INTRON fz	TF binding site BDTNP1_TFBS_dl
3L	1607004	3L_1607004_SNP [dm3] 3L_1607004_SNP [dm6]	T	C	5.697e^-4	0.903	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23149039	3R_23149039_SNP [dm3] 3R_27323317_SNP [dm6]	C	T	5.709e^-4	0.903	UPSTREAM CG3339 INTERGENIC
3R	3274067	3R_3274067_SNP [dm3] 3R_7448345_SNP [dm6]	G	A	5.714e^-4	0.903	INTERGENIC
3R	17843902	3R_17843902_SNP [dm3] 3R_22018180_SNP [dm6]	C	A	5.753e^-4	0.903	INTRON CG6439
3R	17843926	3R_17843926_SNP [dm3] 3R_22018204_SNP [dm6]	T	A	5.753e^-4	0.903	INTRON CG6439
3R	20682396	3R_20682396_SNP [dm3] 3R_24856674_SNP [dm6]	A	G	5.753e^-4	0.903	SYNONYMOUS_CODING CG10899 UPSTREAM HdacX DOWNSTREAM ppk22
3R	3136913	3R_3136913_SNP [dm3] 3R_7311191_SNP [dm6]	G	T	5.753e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3R	9867620	3R_9867620_SNP [dm3] 3R_14041898_SNP [dm6]	A	C	5.763e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9867630	3R_9867630_SNP [dm3] 3R_14041908_SNP [dm6]	G	A	5.763e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14285088	X_14285088_INS [dm3] X_14391055_INS [dm6]	C	GCGGTTATAAATCA...	5.763e^-4	0.903	INTRON dpr8	TF binding site BDTNP1_TFBS_twi
3R	9464224	3R_9464224_INS [dm3] 3R_13638502_INS [dm6]	A	AA	5.814e^-4	0.903	UTR_3_PRIME sqd INTRON sqd
X	18847461	X_18847461_SNP [dm3] X_18953428_SNP [dm6]	T	C	5.814e^-4	0.903	INTRON CG43759
2R	11588679	2R_11588679_SNP [dm3] 2R_15701174_SNP [dm6]	G	C	5.820e^-4	0.903	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11588680	2R_11588680_SNP [dm3] 2R_15701175_SNP [dm6]	C	T	5.820e^-4	0.903	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1868417	X_1868417_SNP [dm3] X_1974384_SNP [dm6]	G	A	5.875e^-4	0.903	INTRON Hr4	TF binding site mE1_TFBS_Trl
3R	19511853	3R_19511853_SNP [dm3] 3R_23686131_SNP [dm6]	C	T	5.892e^-4	0.903	UTR_3_PRIME CG18754 UPSTREAM SPE DOWNSTREAM CG18754
2L	16234748	2L_16234748_SNP [dm3] 2L_16234748_SNP [dm6]	C	T	5.906e^-4	0.903	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9011520	2L_9011520_SNP [dm3] 2L_9011520_SNP [dm6]	A	T	5.915e^-4	0.903	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	9011522	2L_9011522_DEL [dm3] 2L_9011522_DEL [dm6]	AAA	A	5.915e^-4	0.903	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3L	16191019	3L_16191019_SNP [dm3] 3L_16197919_SNP [dm6]	T	A	5.941e^-4	0.903	UPSTREAM CR45437 INTRON CG33687
3R	20331581	3R_20331581_SNP [dm3] 3R_24505859_SNP [dm6]	C	G	5.948e^-4	0.903	INTERGENIC
2R	9446051	2R_9446051_DEL [dm3] 2R_13558546_DEL [dm6]	TT	T	5.966e^-4	0.903	UTR_5_PRIME CG13334 UPSTREAM snoRNA:Psi28S-1153 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1129068	3L_1129068_DEL [dm3] 3L_1129068_DEL [dm6]	AG	A	5.966e^-4	0.903	INTERGENIC	regulatory region REDfly_CRMs
3L	12064477	3L_12064477_SNP [dm3] 3L_12071377_SNP [dm6]	G	A	5.966e^-4	0.903	INTRON Sema-5c	TF binding site mE1_TFBS_chinmo
3L	12064480	3L_12064480_SNP [dm3] 3L_12071380_SNP [dm6]	T	C	5.966e^-4	0.903	INTRON Sema-5c	TF binding site mE1_TFBS_chinmo
3L	12064481	3L_12064481_SNP [dm3] 3L_12071381_SNP [dm6]	T	A	5.966e^-4	0.903	INTRON Sema-5c	TF binding site mE1_TFBS_chinmo
3L	12064483	3L_12064483_SNP [dm3] 3L_12071383_SNP [dm6]	A	G	5.966e^-4	0.903	INTRON Sema-5c	TF binding site mE1_TFBS_chinmo
3L	18577702	3L_18577702_SNP [dm3] 3L_18584602_SNP [dm6]	G	A	5.966e^-4	0.903	DOWNSTREAM CR45435 INTERGENIC
3L	18577704	3L_18577704_SNP [dm3] 3L_18584604_SNP [dm6]	C	G	5.966e^-4	0.903	DOWNSTREAM CR45435 INTERGENIC
3L	18577747	3L_18577747_SNP [dm3] 3L_18584647_SNP [dm6]	G	T	5.966e^-4	0.903	DOWNSTREAM CR45435 INTERGENIC
3L	2835495	3L_2835495_SNP [dm3] 3L_2835495_SNP [dm6]	C	T	5.966e^-4	0.903	INTRON CG43444
3L	2835549	3L_2835549_SNP [dm3] 3L_2835549_SNP [dm6]	T	G	5.966e^-4	0.903	INTRON CG43444
3L	2835565	3L_2835565_DEL [dm3] 3L_2835565_DEL [dm6]	TCGAATCTTT	T	5.966e^-4	0.903	INTRON CG43444
3L	3782135	3L_3782135_SNP [dm3] 3L_3782135_SNP [dm6]	G	A	5.966e^-4	0.903	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	6290640	2R_6290640_SNP [dm3] 2R_10403135_SNP [dm6]	G	T	5.968e^-4	0.903	INTRON CG42732
3R	25022166	3R_25022166_SNP [dm3] 3R_29196444_SNP [dm6]	C	A	6.015e^-4	0.903	INTERGENIC
2R	12370535	2R_12370535_INS [dm3] 2R_16483030_INS [dm6]	A	ATTCGTA	6.049e^-4	0.903	INTERGENIC
3L	11691415	3L_11691415_SNP [dm3] 3L_11698315_SNP [dm6]	C	T	6.049e^-4	0.903	SYNONYMOUS_CODING CG6053	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19286562	2R_19286562_SNP [dm3] 2R_23399039_SNP [dm6]	T	C	6.050e^-4	0.903	SYNONYMOUS_CODING CG3520	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8713460	2R_8713460_SNP [dm3] 2R_12825955_SNP [dm6]	A	G	6.050e^-4	0.903	INTERGENIC
X	5927012	X_5927012_SNP [dm3] X_6032979_SNP [dm6]	C	T	6.050e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_sens
3L	5633196	3L_5633196_SNP [dm3] 3L_5640096_SNP [dm6]	C	A	6.073e^-4	0.903	INTRON Blimp-1
2L	6582742	2L_6582742_SNP [dm3] 2L_6582742_SNP [dm6]	G	A	6.089e^-4	0.903	INTRON CG11319
3R	9151027	3R_9151027_SNP [dm3] 3R_13325305_SNP [dm6]	A	T	6.097e^-4	0.903	INTERGENIC
2R	18376539	2R_18376539_SNP [dm3] 2R_22489034_SNP [dm6]	C	T	6.106e^-4	0.903	SYNONYMOUS_CODING CG4554
2R	18376551	2R_18376551_SNP [dm3] 2R_22489046_SNP [dm6]	T	G	6.106e^-4	0.903	SYNONYMOUS_CODING CG4554
2R	18376554	2R_18376554_SNP [dm3] 2R_22489049_SNP [dm6]	G	C	6.106e^-4	0.903	SYNONYMOUS_CODING CG4554
2L	8503245	2L_8503245_SNP [dm3] 2L_8503245_SNP [dm6]	C	G	6.112e^-4	0.903	INTRON Dh31
2R	19349919	2R_19349919_SNP [dm3] 2R_23462396_SNP [dm6]	A	G	6.112e^-4	0.903	INTRON CG43795	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12212298	3L_12212298_SNP [dm3] 3L_12219198_SNP [dm6]	G	A	6.136e^-4	0.903	INTRON app
3R	19019787	3R_19019787_SNP [dm3] 3R_23194065_SNP [dm6]	T	A	6.152e^-4	0.903	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	15744711	3R_15744711_SNP [dm3] 3R_19918989_SNP [dm6]	C	T	6.159e^-4	0.903	SYNONYMOUS_CODING CG4770
3R	19533182	3R_19533182_SNP [dm3] 3R_23707460_SNP [dm6]	T	A	6.159e^-4	0.903	UPSTREAM CR44052 INTRON CG31414
3R	14182438	3R_14182438_SNP [dm3] 3R_18356716_SNP [dm6]	C	A	6.162e^-4	0.903	INTRON CG15803
2R	6616113	2R_6616113_SNP [dm3] 2R_10728608_SNP [dm6]	T	G	6.168e^-4	0.903	UTR_5_PRIME Rab3 DOWNSTREAM CG12338
2R	6616133	2R_6616133_SNP [dm3] 2R_10728628_SNP [dm6]	A	G	6.168e^-4	0.903	UTR_5_PRIME Rab3 DOWNSTREAM CG12338
3L	16477540	3L_16477540_SNP [dm3] 3L_16484440_SNP [dm6]	T	C	6.168e^-4	0.903	UPSTREAM aos INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	16262998	X_16262998_SNP [dm3] X_16368965_SNP [dm6]	C	T	6.168e^-4	0.903	UTR_3_PRIME nonA DOWNSTREAM nonA INTRON nonA
X	7682654	X_7682654_SNP [dm3] X_7788621_SNP [dm6]	T	A	6.168e^-4	0.903	INTERGENIC
X	7682666	X_7682666_SNP [dm3] X_7788633_SNP [dm6]	G	T	6.168e^-4	0.903	INTERGENIC
2R	11421330	2R_11421330_SNP [dm3] 2R_15533825_SNP [dm6]	A	T	6.187e^-4	0.903	INTRON CG30471
2R	11421341	2R_11421341_SNP [dm3] 2R_15533836_SNP [dm6]	A	G	6.187e^-4	0.903	INTRON CG30471
3L	20279211	3L_20279211_INS [dm3] 3L_20286111_INS [dm6]	T	TATGAGGCACATTACTT...	6.187e^-4	0.903	INTRON gogo
2L	19936799	2L_19936799_SNP [dm3] 2L_19936799_SNP [dm6]	C	G	6.190e^-4	0.903	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5643547	3L_5643547_SNP [dm3] 3L_5650447_SNP [dm6]	G	T	6.225e^-4	0.903	UTR_3_PRIME Blimp-1
3L	7976353	3L_7976353_SNP [dm3] 3L_7983253_SNP [dm6]	A	G	6.229e^-4	0.903	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6462266	3L_6462266_SNP [dm3] 3L_6469166_SNP [dm6]	T	C	6.237e^-4	0.903	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	18568516	3L_18568516_SNP [dm3] 3L_18575416_SNP [dm6]	G	T	6.255e^-4	0.903	UTR_3_PRIME AstC-R1	TF binding site mE1_TFBS_inv
3R	19541272	3R_19541272_SNP [dm3] 3R_23715550_SNP [dm6]	C	T	6.255e^-4	0.903	INTRON nau	regulatory region REDfly_CRMs
2R	7765529	2R_7765529_SNP [dm3] 2R_11878024_SNP [dm6]	G	T	6.259e^-4	0.903	SYNONYMOUS_CODING CG13185
2R	7766347	2R_7766347_SNP [dm3] 2R_11878842_SNP [dm6]	G	A	6.259e^-4	0.903	SYNONYMOUS_CODING CG13185
X	2365838	X_2365838_SNP [dm3] X_2471805_SNP [dm6]	G	T	6.286e^-4	0.903	INTRON trol
X	3889775	X_3889775_SNP [dm3] X_3995742_SNP [dm6]	C	G	6.342e^-4	0.903	INTERGENIC
2R	17722253	2R_17722253_SNP [dm3] 2R_21834748_SNP [dm6]	G	A	6.345e^-4	0.903	SYNONYMOUS_CODING CG4363 DOWNSTREAM CG4377
3L	10963441	3L_10963441_SNP [dm3] 3L_10970341_SNP [dm6]	C	A	6.371e^-4	0.903	INTERGENIC
3L	13331095	3L_13331095_SNP [dm3] 3L_13337995_SNP [dm6]	G	A	6.374e^-4	0.903	INTERGENIC
X	21907749	X_21907749_SNP [dm3] X_22505913_SNP [dm6]	G	T	6.380e^-4	0.903	SYNONYMOUS_CODING l_1_G0196	TF binding site mE1_TFBS_chinmo
2L	1958840	2L_1958840_SNP [dm3] 2L_1958840_SNP [dm6]	G	A	6.460e^-4	0.903	INTRON erm	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3740451	2L_3740451_SNP [dm3] 2L_3740451_SNP [dm6]	G	A	6.460e^-4	0.903	INTRON CG10019
2L	8255578	2L_8255578_SNP [dm3] 2L_8255578_SNP [dm6]	A	T	6.460e^-4	0.903	INTRON CG8086
2L	8255579	2L_8255579_SNP [dm3] 2L_8255579_SNP [dm6]	A	G	6.460e^-4	0.903	INTRON CG8086
2L	8255658	2L_8255658_DEL [dm3] 2L_8255658_DEL [dm6]	ATCATCG	C	6.460e^-4	0.903	INTRON CG8086
2L	6558219	2L_6558219_SNP [dm3] 2L_6558219_SNP [dm6]	T	A	6.460e^-4	0.903	UPSTREAM Osm6 INTRON CoVb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	17318589	2R_17318589_SNP [dm3] 2R_21431084_SNP [dm6]	T	C	6.486e^-4	0.903	INTRON Sdc
X	11109973	X_11109973_SNP [dm3] X_11215940_SNP [dm6]	A	G	6.544e^-4	0.903	INTERGENIC
2L	4317499	2L_4317499_SNP [dm3] 2L_4317499_SNP [dm6]	A	C	6.559e^-4	0.903	INTRON tutl	TF binding site mE1_TFBS_HSA
3L	3484522	3L_3484522_SNP [dm3] 3L_3484522_SNP [dm6]	C	A	6.603e^-4	0.903	INTRON CG42324 & 1 other
2R	17290700	2R_17290700_DEL [dm3] 2R_21403195_DEL [dm6]	CAAGGACATCCAC...	C	6.632e^-4	0.903	INTRON Sdc
X	19247684	X_19247684_SNP [dm3] X_19353651_SNP [dm6]	G	T	6.648e^-4	0.903	SPLICE_SITE_REGION kek5 START_GAINED kek5 UTR_5_PRIME kek5 INTRON kek5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	11418404	2R_11418404_SNP [dm3] 2R_15530899_SNP [dm6]	G	C	6.655e^-4	0.903	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	14996063	X_14996063_SNP [dm3] X_15102030_SNP [dm6]	T	C	6.662e^-4	0.903	SYNONYMOUS_CODING Rab3-GEF
2L	18221548	2L_18221548_SNP [dm3] 2L_18221548_SNP [dm6]	T	C	6.667e^-4	0.903	INTRON CG42750
2L	18234020	2L_18234020_SNP [dm3] 2L_18234020_SNP [dm6]	T	G	6.667e^-4	0.903	INTRON CG42750
2L	12119283	2L_12119283_INS [dm3] 2L_12119283_INS [dm6]	T	TT	6.689e^-4	0.903	INTRON CG17211
3L	19339440	3L_19339440_SNP [dm3] 3L_19346340_SNP [dm6]	C	A	6.710e^-4	0.903	INTRON CG32206
3R	26363769	3R_26363769_SNP [dm3] 3R_30538047_SNP [dm6]	C	A	6.725e^-4	0.903	UPSTREAM tmod INTRON tmod
X	21283203	X_21283203_SNP [dm3] X_21412176_SNP [dm6]	T	A	6.733e^-4	0.903	INTERGENIC
2R	12026157	2R_12026157_INS [dm3] 2R_16138652_INS [dm6]	T	TT	6.743e^-4	0.903	UPSTREAM Got1 DOWNSTREAM spin INTRON Got1	TF binding site BDTNP1_TFBS_dl
2R	15952386	2R_15952386_SNP [dm3] 2R_20064881_SNP [dm6]	C	T	6.743e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19692312	2R_19692312_SNP [dm3] 2R_23804789_SNP [dm6]	T	C	6.743e^-4	0.903	UPSTREAM CG5539 INTRON CG13561	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21427364	X_21427364_SNP [dm3] X_21556337_SNP [dm6]	T	A	6.743e^-4	0.903	INTERGENIC
2R	13547028	2R_13547028_SNP [dm3] 2R_17659523_SNP [dm6]	C	T	6.755e^-4	0.903	INTRON CCHa1-R
2R	13547034	2R_13547034_SNP [dm3] 2R_17659529_SNP [dm6]	C	A	6.755e^-4	0.903	INTRON CCHa1-R
2R	13547068	2R_13547068_SNP [dm3] 2R_17659563_SNP [dm6]	A	C	6.755e^-4	0.903	INTRON CCHa1-R
2L	13255983	2L_13255983_SNP [dm3] 2L_13255983_SNP [dm6]	G	A	6.756e^-4	0.903	SYNONYMOUS_CODING CG31728	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13544007	2L_13544007_SNP [dm3] 2L_13544007_SNP [dm6]	T	G	6.774e^-4	0.903	DOWNSTREAM CG16853 INTRON B4
3L	4970403	3L_4970403_SNP [dm3] 3L_4970403_SNP [dm6]	A	G	6.782e^-4	0.903	INTRON Con	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16748416	3R_16748416_SNP [dm3] 3R_20922694_SNP [dm6]	C	T	6.782e^-4	0.903	INTRON CG31191 & 1 other
X	17952323	X_17952323_INS [dm3] X_18058290_INS [dm6]	T	TTAAAGG	6.804e^-4	0.903	INTRON Sh
2R	17566969	2R_17566969_SNP [dm3] 2R_21679464_SNP [dm6]	C	G	6.815e^-4	0.903	NON_SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14304576	2L_14304576_SNP [dm3] 2L_14304576_SNP [dm6]	G	A	6.816e^-4	0.903	INTRON wb	TF binding site mE1_TFBS_inv
2L	7375758	2L_7375758_SNP [dm3] 2L_7375758_SNP [dm6]	G	A	6.902e^-4	0.903	SYNONYMOUS_CODING Wnt10
2R	11442692	2R_11442692_SNP [dm3] 2R_15555187_SNP [dm6]	C	A	6.933e^-4	0.903	UPSTREAM CG12963 INTERGENIC
2R	11442699	2R_11442699_DEL [dm3] 2R_15555194_DEL [dm6]	AAAGGACTTATGTATATTTT...	A	6.933e^-4	0.903	UPSTREAM CG12963 INTERGENIC
2R	11442755	2R_11442755_SNP [dm3] 2R_15555250_SNP [dm6]	G	A	6.933e^-4	0.903	UPSTREAM CG12963 INTERGENIC
2R	11442772	2R_11442772_SNP [dm3] 2R_15555267_SNP [dm6]	T	A	6.933e^-4	0.903	UPSTREAM CG12963 INTERGENIC
2R	12505895	2R_12505895_SNP [dm3] 2R_16618390_SNP [dm6]	A	G	6.933e^-4	0.903	INTRON CG5065
2R	12505974	2R_12505974_SNP [dm3] 2R_16618469_SNP [dm6]	G	A	6.933e^-4	0.903	INTRON CG5065
2R	12506064	2R_12506064_SNP [dm3] 2R_16618559_SNP [dm6]	G	A	6.933e^-4	0.903	INTRON CG5065
2R	12506092	2R_12506092_INS [dm3] 2R_16618587_INS [dm6]	A	ACATGCTAC	6.933e^-4	0.903	INTRON CG5065
2R	12506162	2R_12506162_SNP [dm3] 2R_16618657_SNP [dm6]	A	T	6.933e^-4	0.903	INTRON CG5065
2R	12506164	2R_12506164_SNP [dm3] 2R_16618659_SNP [dm6]	G	T	6.933e^-4	0.903	INTRON CG5065
2R	12506165	2R_12506165_SNP [dm3] 2R_16618660_SNP [dm6]	A	G	6.933e^-4	0.903	INTRON CG5065
2R	12506168	2R_12506168_SNP [dm3] 2R_16618663_SNP [dm6]	G	C	6.933e^-4	0.903	INTRON CG5065
2R	12506173	2R_12506173_SNP [dm3] 2R_16618668_SNP [dm6]	A	T	6.933e^-4	0.903	INTRON CG5065
2R	12506176	2R_12506176_INS [dm3] 2R_16618671_INS [dm6]	T	TTTGTATGCGGCTCTAGA...	6.933e^-4	0.903	INTRON CG5065
2R	12506196	2R_12506196_DEL [dm3] 2R_16618691_DEL [dm6]	TT	T	6.933e^-4	0.903	INTRON CG5065
2R	12506216	2R_12506216_SNP [dm3] 2R_16618711_SNP [dm6]	A	T	6.933e^-4	0.903	INTRON CG5065
3L	11662128	3L_11662128_SNP [dm3] 3L_11669028_SNP [dm6]	G	C	6.933e^-4	0.903	INTRON CG32085
X	9843937	X_9843937_SNP [dm3] X_9949904_SNP [dm6]	A	G	6.950e^-4	0.903	INTERGENIC
3R	11141369	3R_11141369_SNP [dm3] 3R_15315647_SNP [dm6]	A	G	6.971e^-4	0.903	UPSTREAM CG14866 DOWNSTREAM Tm2 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	11141372	3R_11141372_SNP [dm3] 3R_15315650_SNP [dm6]	G	A	6.971e^-4	0.903	UPSTREAM CG14866 DOWNSTREAM Tm2 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	11141374	3R_11141374_SNP [dm3] 3R_15315652_SNP [dm6]	A	G	6.971e^-4	0.903	UPSTREAM CG14866 DOWNSTREAM Tm2 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	11141410	3R_11141410_SNP [dm3] 3R_15315688_SNP [dm6]	G	C	6.971e^-4	0.903	UPSTREAM CG14866 DOWNSTREAM Tm2 INTERGENIC	TF binding site mE1_TFBS_HSA
X	7924257	X_7924257_SNP [dm3] X_8030224_SNP [dm6]	A	G	6.974e^-4	0.903	INTERGENIC
2R	17011303	2R_17011303_DEL [dm3] 2R_21123798_DEL [dm6]	CGTCAGGCC	C	6.977e^-4	0.903	UTR_3_PRIME CG4050 DOWNSTREAM ktub
2L	4071108	2L_4071108_SNP [dm3] 2L_4071108_SNP [dm6]	G	A	6.990e^-4	0.903	INTRON ed
3R	24720563	3R_24720563_SNP [dm3] 3R_28894841_SNP [dm6]	A	G	7.006e^-4	0.903	SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo
X	15121503	X_15121503_SNP [dm3] X_15227470_SNP [dm6]	T	A	7.014e^-4	0.903	INTERGENIC
3R	13523916	3R_13523916_SNP [dm3] 3R_17698194_SNP [dm6]	A	G	7.049e^-4	0.903	INTRON osa	TF binding site mE1_TFBS_chinmo
3R	14187168	3R_14187168_SNP [dm3] 3R_18361446_SNP [dm6]	T	A	7.049e^-4	0.903	UPSTREAM CG15803 & 1 other DOWNSTREAM CR45634 INTERGENIC
2L	16234623	2L_16234623_SNP [dm3] 2L_16234623_SNP [dm6]	T	A	7.065e^-4	0.903	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10416114	2R_10416114_SNP [dm3] 2R_14528609_SNP [dm6]	G	A	7.069e^-4	0.903	INTRON ttv
3L	16168892	3L_16168892_SNP [dm3] 3L_16175792_SNP [dm6]	G	T	7.084e^-4	0.903	INTERGENIC
2L	859012	2L_859012_SNP [dm3] 2L_859012_SNP [dm6]	G	A	7.087e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14593250	2L_14593250_SNP [dm3] 2L_14593250_SNP [dm6]	T	G	7.101e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11694127	3L_11694127_SNP [dm3] 3L_11701027_SNP [dm6]	G	A	7.102e^-4	0.903	SYNONYMOUS_CODING CG11658	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9867575	3R_9867575_SNP [dm3] 3R_14041853_SNP [dm6]	C	T	7.127e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11102767	3L_11102767_SNP [dm3] 3L_11109667_SNP [dm6]	C	T	7.152e^-4	0.903	UPSTREAM CG7638 & 1 other DOWNSTREAM CG12522 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18436479	X_18436479_SNP [dm3] X_18542446_SNP [dm6]	C	T	7.152e^-4	0.903	INTRON Bx
X	20537776	X_20537776_SNP [dm3] X_20666749_SNP [dm6]	C	T	7.152e^-4	0.903	INTRON CG1835	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20538152	X_20538152_SNP [dm3] X_20667125_SNP [dm6]	T	C	7.152e^-4	0.903	INTRON CG1835
2R	7151295	2R_7151295_SNP [dm3] 2R_11263790_SNP [dm6]	A	C	7.169e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_ttk
2L	1520013	2L_1520013_SNP [dm3] 2L_1520013_SNP [dm6]	C	T	7.180e^-4	0.903	UPSTREAM Or22a DOWNSTREAM CG44072 INTERGENIC
2L	1520459	2L_1520459_SNP [dm3] 2L_1520459_SNP [dm6]	T	A	7.180e^-4	0.903	UPSTREAM Or22a & 1 other INTERGENIC
2L	1520473	2L_1520473_SNP [dm3] 2L_1520473_SNP [dm6]	A	G	7.180e^-4	0.903	UPSTREAM Or22a & 1 other INTERGENIC
2R	6531519	2R_6531519_SNP [dm3] 2R_10644014_SNP [dm6]	A	T	7.257e^-4	0.903	INTRON Git	TF binding site mE1_TFBS_HSA
X	4047312	X_4047312_INS [dm3] X_4153279_INS [dm6]	T	TTTGCCTTT	7.257e^-4	0.903	INTRON Fas2
X	4047338	X_4047338_SNP [dm3] X_4153305_SNP [dm6]	A	T	7.257e^-4	0.903	INTRON Fas2
3R	10614697	3R_10614697_SNP [dm3] 3R_14788975_SNP [dm6]	G	A	7.263e^-4	0.903	INTRON jvl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17163071	X_17163071_SNP [dm3] X_17269038_SNP [dm6]	T	A	7.268e^-4	0.903	INTRON f
2L	2856891	2L_2856891_DEL [dm3] 2L_2856891_DEL [dm6]	TAATT	T	7.278e^-4	0.903	UTR_3_PRIME RpS21 UPSTREAM CG2991 DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
X	10331259	X_10331259_SNP [dm3] X_10437226_SNP [dm6]	C	G	7.286e^-4	0.903	INTRON CG32683
3L	11838445	3L_11838445_SNP [dm3] 3L_11845345_SNP [dm6]	G	C	7.291e^-4	0.903	INTERGENIC
3L	2595302	3L_2595302_SNP [dm3] 3L_2595302_SNP [dm6]	G	A	7.292e^-4	0.903	UTR_3_PRIME dos UPSTREAM CG16984 DOWNSTREAM CG12182	TF binding site mE1_TFBS_cad
3L	11845955	3L_11845955_SNP [dm3] 3L_11852855_SNP [dm6]	T	A	7.293e^-4	0.903	INTRON CG44837
2L	6293209	2L_6293209_SNP [dm3] 2L_6293209_SNP [dm6]	A	G	7.374e^-4	0.903	INTRON Ddr
3R	21231638	3R_21231638_SNP [dm3] 3R_25405916_SNP [dm6]	A	C	7.391e^-4	0.903	INTRON Fur1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18222771	2L_18222771_SNP [dm3] 2L_18222771_SNP [dm6]	A	T	7.451e^-4	0.903	INTRON CG42750
2L	18222773	2L_18222773_SNP [dm3] 2L_18222773_SNP [dm6]	T	G	7.451e^-4	0.903	INTRON CG42750
2L	18222782	2L_18222782_SNP [dm3] 2L_18222782_SNP [dm6]	A	T	7.451e^-4	0.903	INTRON CG42750
2L	6916598	2L_6916598_SNP [dm3] 2L_6916598_SNP [dm6]	G	A	7.494e^-4	0.903	UPSTREAM CG32829 DOWNSTREAM nop5 & 1 other INTRON x16
2R	10046440	2R_10046440_SNP [dm3] 2R_14158935_SNP [dm6]	C	A	7.494e^-4	0.903	NON_SYNONYMOUS_CODING CG13016 DOWNSTREAM CG8257
2R	17761828	2R_17761828_SNP [dm3] 2R_21874323_SNP [dm6]	T	A	7.494e^-4	0.903	INTRON Fili	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	10415182	X_10415182_SNP [dm3] X_10521149_SNP [dm6]	T	C	7.494e^-4	0.903	INTRON spri
X	18847395	X_18847395_SNP [dm3] X_18953362_SNP [dm6]	T	A	7.494e^-4	0.903	INTRON CG43759
X	18847600	X_18847600_SNP [dm3] X_18953567_SNP [dm6]	A	G	7.494e^-4	0.903	INTRON CG43759
3L	20964980	3L_20964980_SNP [dm3] 3L_20971880_SNP [dm6]	T	C	7.500e^-4	0.903	NON_SYNONYMOUS_CODING CG33286	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11659384	3L_11659384_SNP [dm3] 3L_11666284_SNP [dm6]	T	G	7.504e^-4	0.903	INTRON CG32085
X	12513573	X_12513573_SNP [dm3] X_12619540_SNP [dm6]	T	G	7.507e^-4	0.903	INTRON CG11085
X	19485846	X_19485846_SNP [dm3] X_19591813_SNP [dm6]	T	A	7.518e^-4	0.903	UPSTREAM CG14205 INTERGENIC
3L	2445295	3L_2445295_SNP [dm3] 3L_2445295_SNP [dm6]	C	T	7.543e^-4	0.903	SYNONYMOUS_CODING CG45186	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12263200	2L_12263200_SNP [dm3] 2L_12263200_SNP [dm6]	T	G	7.548e^-4	0.903	INTRON aret
2L	1639762	2L_1639762_SNP [dm3] 2L_1639762_SNP [dm6]	C	T	7.548e^-4	0.903	INTERGENIC
2L	2860293	2L_2860293_SNP [dm3] 2L_2860293_SNP [dm6]	T	A	7.548e^-4	0.903	INTRON CG2991	TF binding site mE1_TFBS_inv
2L	8534532	2L_8534532_SNP [dm3] 2L_8534532_SNP [dm6]	A	G	7.548e^-4	0.903	INTRON CG17834	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	937154	3L_937154_SNP [dm3] 3L_937154_SNP [dm6]	A	G	7.563e^-4	0.903	INTRON Glut1
2L	6020172	2L_6020172_SNP [dm3] 2L_6020172_SNP [dm6]	A	G	7.587e^-4	0.903	UPSTREAM H2.0 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9245576	2L_9245576_SNP [dm3] 2L_9245576_SNP [dm6]	G	T	7.609e^-4	0.903	SYNONYMOUS_CODING tai
2L	9245842	2L_9245842_SNP [dm3] 2L_9245842_SNP [dm6]	G	T	7.609e^-4	0.903	UTR_3_PRIME tai
3L	8533117	3L_8533117_SNP [dm3] 3L_8540017_SNP [dm6]	G	T	7.622e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14432583	3L_14432583_SNP [dm3] 3L_14439483_SNP [dm6]	A	T	7.674e^-4	0.903	INTRON bbg
3L	14432737	3L_14432737_SNP [dm3] 3L_14439637_SNP [dm6]	T	C	7.674e^-4	0.903	INTRON bbg
X	17206194	X_17206194_SNP [dm3] X_17312161_SNP [dm6]	T	G	7.675e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2434439	3L_2434439_SNP [dm3] 3L_2434439_SNP [dm6]	T	A	7.675e^-4	0.903	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4162246	2R_4162246_SNP [dm3] 2R_8274741_SNP [dm6]	C	A	7.685e^-4	0.903	INTERGENIC
3R	17795740	3R_17795740_SNP [dm3] 3R_21970018_SNP [dm6]	T	C	7.690e^-4	0.903	INTRON Eip93F
2L	6589467	2L_6589467_SNP [dm3] 2L_6589467_SNP [dm6]	C	G	7.742e^-4	0.903	INTRON CG11319
2R	12026432	2R_12026432_SNP [dm3] 2R_16138927_SNP [dm6]	T	C	7.751e^-4	0.903	DOWNSTREAM spin INTRON Got1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24693990	3R_24693990_SNP [dm3] 3R_28868268_SNP [dm6]	G	A	7.763e^-4	0.903	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
3R	24756163	3R_24756163_SNP [dm3] 3R_28930441_SNP [dm6]	C	A	7.763e^-4	0.903	INTRON CG14521
X	20258601	X_20258601_SNP [dm3] X_20387574_SNP [dm6]	G	C	7.781e^-4	0.903	INTERGENIC
3R	6978431	3R_6978431_SNP [dm3] 3R_11152709_SNP [dm6]	C	T	7.800e^-4	0.903	NON_SYNONYMOUS_CODING Ugt86Di
2L	11498247	2L_11498247_SNP [dm3] 2L_11498247_SNP [dm6]	C	T	7.824e^-4	0.903	INTRON CG6488	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14894747	2L_14894747_SNP [dm3] 2L_14894747_SNP [dm6]	C	T	7.856e^-4	0.903	INTERGENIC
2L	8149014	2L_8149014_SNP [dm3] 2L_8149014_SNP [dm6]	G	C	7.856e^-4	0.903	UTR_5_PRIME CG43394 DOWNSTREAM CG31606 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8441338	3L_8441338_SNP [dm3] 3L_8448238_SNP [dm6]	A	C	7.858e^-4	0.903	INTRON CG6983	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	3138788	3L_3138788_SNP [dm3] 3L_3138788_SNP [dm6]	C	G	7.874e^-4	0.903	INTRON CG11537
3L	3422210	3L_3422210_SNP [dm3] 3L_3422210_SNP [dm6]	T	C	7.874e^-4	0.903	INTRON sty
3L	3422241	3L_3422241_SNP [dm3] 3L_3422241_SNP [dm6]	C	T	7.874e^-4	0.903	INTRON sty
3L	7997878	3L_7997878_INS [dm3] 3L_8004778_INS [dm6]	C	CC	7.874e^-4	0.903	INTRON nmo
3L	8582649	3L_8582649_SNP [dm3] 3L_8589549_SNP [dm6]	C	T	7.874e^-4	0.903	UPSTREAM CG43078 INTRON CG43078
3L	8582875	3L_8582875_SNP [dm3] 3L_8589775_SNP [dm6]	G	T	7.874e^-4	0.903	UPSTREAM CG43078 INTRON CG43078
3L	8582963	3L_8582963_SNP [dm3] 3L_8589863_SNP [dm6]	T	C	7.874e^-4	0.903	UPSTREAM CG43078 INTRON CG43078
3L	8583017	3L_8583017_SNP [dm3] 3L_8589917_SNP [dm6]	G	A	7.874e^-4	0.903	UPSTREAM CG43078 INTRON CG43078
X	15019244	X_15019244_SNP [dm3] X_15125211_SNP [dm6]	T	C	7.874e^-4	0.903	UPSTREAM drd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17549670	X_17549670_SNP [dm3] X_17655637_SNP [dm6]	A	T	7.874e^-4	0.903	INTRON IntS2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7460451	3L_7460451_SNP [dm3] 3L_7467351_SNP [dm6]	A	G	7.877e^-4	0.903	SYNONYMOUS_CODING Tsp66A UTR_3_PRIME CG42660 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	5369206	3L_5369206_DEL [dm3] 3L_5376106_DEL [dm6]	GTATACTTTCTCG...	G	7.887e^-4	0.903	INTERGENIC
3R	9814373	3R_9814373_SNP [dm3] 3R_13988651_SNP [dm6]	C	T	7.935e^-4	0.903	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	16546959	2L_16546959_SNP [dm3] 2L_16546959_SNP [dm6]	G	T	7.940e^-4	0.903	INTRON CG42389
2R	7560654	2R_7560654_SNP [dm3] 2R_11673149_SNP [dm6]	T	C	7.957e^-4	0.903	SYNONYMOUS_CODING Tret1-1 INTRON Roc2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	8916281	X_8916281_SNP [dm3] X_9022248_SNP [dm6]	C	A	7.972e^-4	0.903	INTRON CR43836 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15266588	3L_15266588_SNP [dm3] 3L_15273488_SNP [dm6]	T	A	8.028e^-4	0.903	INTERGENIC
2L	8792858	2L_8792858_SNP [dm3] 2L_8792858_SNP [dm6]	C	T	8.037e^-4	0.903	INTERGENIC
3L	12569491	3L_12569491_DEL [dm3] 3L_12576391_DEL [dm6]	TT	T	8.046e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3R	24630513	3R_24630513_SNP [dm3] 3R_28804791_SNP [dm6]	A	T	8.079e^-4	0.903	INTERGENIC
3R	14900999	3R_14900999_SNP [dm3] 3R_19075277_SNP [dm6]	T	A	8.082e^-4	0.903	INTRON cdi
3R	14901037	3R_14901037_SNP [dm3] 3R_19075315_SNP [dm6]	T	A	8.082e^-4	0.903	INTRON cdi
3R	14901044	3R_14901044_SNP [dm3] 3R_19075322_SNP [dm6]	A	G	8.082e^-4	0.903	INTRON cdi
3R	14901057	3R_14901057_SNP [dm3] 3R_19075335_SNP [dm6]	T	C	8.082e^-4	0.903	INTRON cdi
3R	14901067	3R_14901067_SNP [dm3] 3R_19075345_SNP [dm6]	A	G	8.082e^-4	0.903	INTRON cdi
3R	14901069	3R_14901069_SNP [dm3] 3R_19075347_SNP [dm6]	A	G	8.082e^-4	0.903	INTRON cdi
2L	14200352	2L_14200352_SNP [dm3] 2L_14200352_SNP [dm6]	T	C	8.085e^-4	0.903	INTRON Dyrk2
3R	26532788	3R_26532788_SNP [dm3] 3R_30707066_SNP [dm6]	A	T	8.089e^-4	0.903	UPSTREAM CG31010 INTERGENIC
2L	3609830	2L_3609830_SNP [dm3] 2L_3609830_SNP [dm6]	T	C	8.113e^-4	0.903	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	2142529	3L_2142529_SNP [dm3] 3L_2142529_SNP [dm6]	A	C	8.144e^-4	0.903	INTRON zormin	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2R	11845009	2R_11845009_SNP [dm3] 2R_15957504_SNP [dm6]	T	C	8.147e^-4	0.903	UPSTREAM Strn-Mlck DOWNSTREAM CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
3R	24704705	3R_24704705_SNP [dm3] 3R_28878983_SNP [dm6]	C	T	8.147e^-4	0.903	NON_SYNONYMOUS_CODING CG14523 INTRON CG33203	TF binding site mE1_TFBS_cad
2L	987154	2L_987154_SNP [dm3] 2L_987154_SNP [dm6]	G	C	8.181e^-4	0.903	DOWNSTREAM CR44801 INTERGENIC
2L	18240100	2L_18240100_SNP [dm3] 2L_18240100_SNP [dm6]	T	C	8.216e^-4	0.903	INTRON CG42750
2L	18214845	2L_18214845_SNP [dm3] 2L_18214845_SNP [dm6]	G	A	8.262e^-4	0.903	INTRON CG42750
3L	14435275	3L_14435275_SNP [dm3] 3L_14442175_SNP [dm6]	C	T	8.267e^-4	0.903	INTRON bbg
3L	14435448	3L_14435448_SNP [dm3] 3L_14442348_SNP [dm6]	A	C	8.267e^-4	0.903	INTRON bbg
3R	11390767	3R_11390767_SNP [dm3] 3R_15565045_SNP [dm6]	A	T	8.285e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16406693	2L_16406693_SNP [dm3] 2L_16406693_SNP [dm6]	T	G	8.295e^-4	0.903	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4634660	2R_4634660_SNP [dm3] 2R_8747155_SNP [dm6]	G	A	8.325e^-4	0.903	INTRON CG8740	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14042378	X_14042378_SNP [dm3] X_14148345_SNP [dm6]	T	G	8.341e^-4	0.903	INTERGENIC
3R	15193016	3R_15193016_SNP [dm3] 3R_19367294_SNP [dm6]	C	T	8.354e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	14048691	3L_14048691_SNP [dm3] 3L_14055591_SNP [dm6]	A	G	8.387e^-4	0.903	INTRON CG32138	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	15705268	3L_15705268_SNP [dm3] 3L_15712168_SNP [dm6]	C	A	8.387e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	11418413	2R_11418413_SNP [dm3] 2R_15530908_SNP [dm6]	T	G	8.393e^-4	0.903	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17258238	2R_17258238_SNP [dm3] 2R_21370733_SNP [dm6]	G	T	8.400e^-4	0.903	INTRON cv-2	TF binding site mE1_TFBS_cad
X	9794806	X_9794806_SNP [dm3] X_9900773_SNP [dm6]	A	T	8.405e^-4	0.903	INTERGENIC
2L	1027614	2L_1027614_SNP [dm3] 2L_1027614_SNP [dm6]	C	A	8.451e^-4	0.903	UPSTREAM CG4375 INTRON IA-2
2R	17729762	2R_17729762_SNP [dm3] 2R_21842257_SNP [dm6]	A	G	8.451e^-4	0.903	DOWNSTREAM tRNA:CR30407 INTERGENIC
2R	17729834	2R_17729834_SNP [dm3] 2R_21842329_SNP [dm6]	A	G	8.451e^-4	0.903	DOWNSTREAM tRNA:CR30407 INTERGENIC
2R	19474984	2R_19474984_SNP [dm3] 2R_23587461_SNP [dm6]	A	G	8.451e^-4	0.903	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3141281	3L_3141281_SNP [dm3] 3L_3141281_SNP [dm6]	G	A	8.451e^-4	0.903	INTRON CG11537	TF binding site mE1_TFBS_HSA
X	20340358	X_20340358_SNP [dm3] X_20469331_SNP [dm6]	G	A	8.451e^-4	0.903	SYNONYMOUS_CODING GstT3 DOWNSTREAM RhoGAP19D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6791141	X_6791141_SNP [dm3] X_6897108_SNP [dm6]	T	C	8.451e^-4	0.903	INTERGENIC
X	6791264	X_6791264_SNP [dm3] X_6897231_SNP [dm6]	A	T	8.451e^-4	0.903	INTERGENIC
3L	2431595	3L_2431595_SNP [dm3] 3L_2431595_SNP [dm6]	A	T	8.454e^-4	0.903	INTRON CG45186
3R	19196652	3R_19196652_SNP [dm3] 3R_23370930_SNP [dm6]	T	A	8.460e^-4	0.903	INTERGENIC
3R	19196653	3R_19196653_SNP [dm3] 3R_23370931_SNP [dm6]	T	A	8.460e^-4	0.903	INTERGENIC
3R	19196657	3R_19196657_SNP [dm3] 3R_23370935_SNP [dm6]	C	T	8.460e^-4	0.903	INTERGENIC
3R	22902557	3R_22902557_SNP [dm3] 3R_27076835_SNP [dm6]	A	G	8.464e^-4	0.903	INTRON CG14257
3R	22902558	3R_22902558_SNP [dm3] 3R_27076836_SNP [dm6]	G	A	8.464e^-4	0.903	INTRON CG14257
3R	25371436	3R_25371436_SNP [dm3] 3R_29545714_SNP [dm6]	G	A	8.464e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	2922946	X_2922946_SNP [dm3] X_3028913_SNP [dm6]	T	C	8.464e^-4	0.903	INTRON kirre
2L	4755019	2L_4755019_SNP [dm3] 2L_4755019_SNP [dm6]	T	G	8.471e^-4	0.903	INTRON CG15630
3L	1488202	3L_1488202_SNP [dm3] 3L_1488202_SNP [dm6]	T	C	8.475e^-4	0.903	UPSTREAM CR43701 & 1 other INTRON stet	TF binding site mE1_TFBS_cad
2R	12372445	2R_12372445_SNP [dm3] 2R_16484940_SNP [dm6]	A	G	8.479e^-4	0.903	SYNONYMOUS_CODING CG15712	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13834369	2R_13834369_SNP [dm3] 2R_17946864_SNP [dm6]	A	G	8.479e^-4	0.903	INTERGENIC
X	17634557	X_17634557_SNP [dm3] X_17740524_SNP [dm6]	T	C	8.479e^-4	0.903	SYNONYMOUS_CODING CG42684 INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12261898	3L_12261898_SNP [dm3] 3L_12268798_SNP [dm6]	T	C	8.502e^-4	0.903	SYNONYMOUS_CODING CG32100 DOWNSTREAM Pbgs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11424319	3R_11424319_SNP [dm3] 3R_15598597_SNP [dm6]	T	A	8.502e^-4	0.903	INTERGENIC
3R	11424612	3R_11424612_SNP [dm3] 3R_15598890_SNP [dm6]	G	A	8.502e^-4	0.903	INTERGENIC
3R	16483843	3R_16483843_SNP [dm3] 3R_20658121_SNP [dm6]	C	A	8.502e^-4	0.903	INTRON Nep4
3R	18333502	3R_18333502_SNP [dm3] 3R_22507780_SNP [dm6]	A	G	8.502e^-4	0.903	INTRON Octbeta1R
3R	18336116	3R_18336116_SNP [dm3] 3R_22510394_SNP [dm6]	A	T	8.502e^-4	0.903	INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	23473002	3R_23473002_SNP [dm3] 3R_27647280_SNP [dm6]	G	A	8.502e^-4	0.903	UPSTREAM tau INTRON tau
3R	9702489	3R_9702489_SNP [dm3] 3R_13876767_SNP [dm6]	C	G	8.502e^-4	0.903	INTRON E5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi

By genomic position
Variant impact
Gene name

MeanLS phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results