DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.131e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.08626

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1453 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	1109009	2L_1109009_SNP [dm3] 2L_1109009_SNP [dm6]	T	C	9.169e^-6	0.414	SYNONYMOUS_CODING CG14339 UPSTREAM mtRNApol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	4685258	2R_4685258_SNP [dm3] 2R_8797753_SNP [dm6]	C	G	9.169e^-6	0.414	UPSTREAM sns INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	1114134	2L_1114134_SNP [dm3] 2L_1114134_SNP [dm6]	T	A	1.412e^-5	0.414	UTR_3_PRIME CG14340 DOWNSTREAM Pino
2L	16765997	2L_16765997_SNP [dm3] 2L_16765997_SNP [dm6]	T	C	1.412e^-5	0.414	UPSTREAM Mhc INTERGENIC
2L	19368143	2L_19368143_SNP [dm3] 2L_19368143_SNP [dm6]	A	T	2.035e^-5	0.414	INTERGENIC
2L	10125642	2L_10125642_SNP [dm3] 2L_10125642_SNP [dm6]	A	T	3.453e^-5	0.414	UTR_3_PRIME CG34109 INTRON CG44153
2L	1105107	2L_1105107_DEL [dm3] 2L_1105107_DEL [dm6]	AA	A	3.453e^-5	0.414	SPLICE_SITE_REGION mtRNApol INTRON mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1105125	2L_1105125_SNP [dm3] 2L_1105125_SNP [dm6]	G	A	3.453e^-5	0.414	INTRON mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1105243	2L_1105243_SNP [dm3] 2L_1105243_SNP [dm6]	C	G	3.453e^-5	0.414	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1109393	2L_1109393_SNP [dm3] 2L_1109393_SNP [dm6]	G	A	3.453e^-5	0.414	SYNONYMOUS_CODING CG14339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
2L	1109513	2L_1109513_SNP [dm3] 2L_1109513_SNP [dm6]	C	T	3.453e^-5	0.414	SYNONYMOUS_CODING CG14339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	1111513	2L_1111513_SNP [dm3] 2L_1111513_SNP [dm6]	C	A	3.453e^-5	0.414	NON_SYNONYMOUS_CODING CG14339
2L	1111676	2L_1111676_SNP [dm3] 2L_1111676_SNP [dm6]	C	T	3.453e^-5	0.414	SYNONYMOUS_CODING CG14339	TF binding site mE1_TFBS_chinmo
2L	16594262	2L_16594262_SNP [dm3] 2L_16594262_SNP [dm6]	C	A	3.453e^-5	0.414	INTRON CG42389
2L	16594263	2L_16594263_SNP [dm3] 2L_16594263_SNP [dm6]	C	T	3.453e^-5	0.414	INTRON CG42389
2L	16802183	2L_16802183_SNP [dm3] 2L_16802183_SNP [dm6]	A	C	3.453e^-5	0.414	NON_SYNONYMOUS_CODING CG13280 DOWNSTREAM Ugt36Bc
2L	17634712	2L_17634712_SNP [dm3] 2L_17634712_SNP [dm6]	G	A	3.453e^-5	0.414	INTERGENIC
2L	17636139	2L_17636139_SNP [dm3] 2L_17636139_SNP [dm6]	T	A	3.453e^-5	0.414	INTERGENIC
2L	17636141	2L_17636141_SNP [dm3] 2L_17636141_SNP [dm6]	A	G	3.453e^-5	0.414	INTERGENIC
2L	17636143	2L_17636143_SNP [dm3] 2L_17636143_SNP [dm6]	A	T	3.453e^-5	0.414	INTERGENIC
2L	17636160	2L_17636160_DEL [dm3] 2L_17636160_DEL [dm6]	GG	A	3.453e^-5	0.414	INTERGENIC
2L	20377635	2L_20377635_SNP [dm3] 2L_20377635_SNP [dm6]	T	G	3.453e^-5	0.414	INTRON CG16798
2L	20379440	2L_20379440_SNP [dm3] 2L_20379440_SNP [dm6]	C	T	3.453e^-5	0.414	NON_SYNONYMOUS_CODING CG16798
X	10505725	X_10505725_SNP [dm3] X_10611692_SNP [dm6]	A	G	4.223e^-5	0.414	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_chinmo
2R	15294833	2R_15294833_SNP [dm3] 2R_19407328_SNP [dm6]	A	G	4.692e^-5	0.414	INTRON hts
2L	14803636	2L_14803636_SNP [dm3] 2L_14803636_SNP [dm6]	T	C	5.020e^-5	0.414	DOWNSTREAM CG33308 INTERGENIC
2L	4318113	2L_4318113_SNP [dm3] 2L_4318113_SNP [dm6]	T	C	5.020e^-5	0.414	INTRON tutl	TF binding site mE1_TFBS_HSA
2L	5930749	2L_5930749_SNP [dm3] 2L_5930749_SNP [dm6]	G	T	5.047e^-5	0.414	INTRON dsf
2R	14781302	2R_14781302_SNP [dm3] 2R_18893797_SNP [dm6]	A	C	5.203e^-5	0.414	INTRON sano
2L	674784	2L_674784_SNP [dm3] 2L_674784_SNP [dm6]	T	A	5.327e^-5	0.414	INTRON ds
2R	12385453	2R_12385453_SNP [dm3] 2R_16497948_SNP [dm6]	C	G	5.327e^-5	0.414	NON_SYNONYMOUS_CODING CG7813
2R	13671870	2R_13671870_SNP [dm3] 2R_17784365_SNP [dm6]	C	T	5.327e^-5	0.414	UPSTREAM mir-31a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	7528403	2R_7528403_SNP [dm3] 2R_11640898_SNP [dm6]	C	G	5.327e^-5	0.414	UTR_5_PRIME CG9005 DOWNSTREAM CG9003	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	7540681	2R_7540681_SNP [dm3] 2R_11653176_SNP [dm6]	C	T	5.327e^-5	0.414	UPSTREAM tRNA:CR30254 DOWNSTREAM CG34228 & 1 other INTRON Roc2	TF binding site mE1_TFBS_cad
X	15285687	X_15285687_SNP [dm3] X_15391654_SNP [dm6]	G	T	5.327e^-5	0.414	INTRON Cngl
X	15286206	X_15286206_SNP [dm3] X_15392173_SNP [dm6]	C	T	5.327e^-5	0.414	INTRON Cngl
2R	14522723	2R_14522723_SNP [dm3] 2R_18635218_SNP [dm6]	C	A	5.520e^-5	0.414	INTRON CG30122	TF binding site BDTNP1_TFBS_dl
2L	14324624	2L_14324624_SNP [dm3] 2L_14324624_SNP [dm6]	G	A	5.608e^-5	0.414	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
2L	6229430	2L_6229430_SNP [dm3] 2L_6229430_SNP [dm6]	C	T	5.608e^-5	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	8718964	2L_8718964_SNP [dm3] 2L_8718964_SNP [dm6]	G	C	5.608e^-5	0.414	INTRON raw	TF binding site mE1_TFBS_Trl
3L	11450024	3L_11450024_SNP [dm3] 3L_11456924_SNP [dm6]	T	A	5.956e^-5	0.414	DOWNSTREAM CG12289 INTERGENIC
2R	13827752	2R_13827752_SNP [dm3] 2R_17940247_SNP [dm6]	T	C	5.979e^-5	0.414	INTERGENIC
2R	13829228	2R_13829228_SNP [dm3] 2R_17941723_SNP [dm6]	G	C	5.979e^-5	0.414	INTERGENIC
3R	13709627	3R_13709627_SNP [dm3] 3R_17883905_SNP [dm6]	C	G	5.979e^-5	0.414	SYNONYMOUS_CODING Rim INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16655897	X_16655897_INS [dm3] X_16761864_INS [dm6]	C	CAGGCC	5.979e^-5	0.414	INTRON if
2L	1111222	2L_1111222_SNP [dm3] 2L_1111222_SNP [dm6]	C	T	6.010e^-5	0.414	INTRON CG14339
2L	10413683	2L_10413683_SNP [dm3] 2L_10413683_SNP [dm6]	T	G	6.149e^-5	0.414	UPSTREAM Klp31E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	13675629	X_13675629_SNP [dm3] X_13781596_SNP [dm6]	T	C	6.149e^-5	0.414	SYNONYMOUS_CODING CtsB1 UPSTREAM CG11103	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	1113327	2L_1113327_SNP [dm3] 2L_1113327_SNP [dm6]	G	A	6.352e^-5	0.414	NON_SYNONYMOUS_CODING CG14340 DOWNSTREAM CG14339
2L	1113552	2L_1113552_SNP [dm3] 2L_1113552_SNP [dm6]	C	T	6.352e^-5	0.414	SPLICE_SITE_REGION CG14340 DOWNSTREAM CG14339 INTRON CG14340
2L	1114376	2L_1114376_SNP [dm3] 2L_1114376_SNP [dm6]	A	T	6.352e^-5	0.414	DOWNSTREAM Pino & 1 other INTERGENIC
2L	1114514	2L_1114514_SNP [dm3] 2L_1114514_SNP [dm6]	G	T	6.352e^-5	0.414	DOWNSTREAM Pino & 1 other INTERGENIC
2L	1116164	2L_1116164_SNP [dm3] 2L_1116164_SNP [dm6]	C	T	6.352e^-5	0.414	INTRON Pino	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	1116297	2L_1116297_SNP [dm3] 2L_1116297_SNP [dm6]	A	G	6.352e^-5	0.414	INTRON Pino	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	12696136	2L_12696136_SNP [dm3] 2L_12696136_SNP [dm6]	A	T	6.352e^-5	0.414	SPLICE_SITE_REGION PICK1 START_GAINED PICK1 UTR_5_PRIME PICK1 UPSTREAM PICK1 DOWNSTREAM CG5781 INTRON PICK1
2L	16765887	2L_16765887_SNP [dm3] 2L_16765887_SNP [dm6]	T	C	6.352e^-5	0.414	UPSTREAM Mhc INTERGENIC
2R	14623931	2R_14623931_SNP [dm3] 2R_18736426_SNP [dm6]	T	G	6.352e^-5	0.414	INTRON Hs3st-A
3R	19564473	3R_19564473_SNP [dm3] 3R_23738751_SNP [dm6]	A	G	6.480e^-5	0.414	INTRON Hmgcr
3R	19564500	3R_19564500_SNP [dm3] 3R_23738778_SNP [dm6]	A	G	6.480e^-5	0.414	INTRON Hmgcr
3R	19794096	3R_19794096_SNP [dm3] 3R_23968374_SNP [dm6]	A	G	6.480e^-5	0.414	INTRON CG31140
2L	21757684	2L_21757684_SNP [dm3] 2L_21757684_SNP [dm6]	A	T	6.627e^-5	0.414	UPSTREAM CG1416 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	17636231	2L_17636231_SNP [dm3] 2L_17636231_SNP [dm6]	G	T	7.120e^-5	0.414	INTERGENIC
3L	9164489	3L_9164489_SNP [dm3] 3L_9171389_SNP [dm6]	A	C	7.222e^-5	0.414	INTRON Rdl
2L	8720250	2L_8720250_SNP [dm3] 2L_8720250_SNP [dm6]	A	C	7.564e^-5	0.414	INTRON raw
2L	8978435	2L_8978435_SNP [dm3] 2L_8978435_SNP [dm6]	G	A	7.570e^-5	0.414	SYNONYMOUS_CODING CG13101
X	22330570	X_22330570_SNP [dm3] X_22928734_SNP [dm6]	C	A	7.778e^-5	0.414	INTERGENIC
X	22333095	X_22333095_SNP [dm3] X_22931259_SNP [dm6]	A	T	7.778e^-5	0.414	INTERGENIC	transposable element FlyBase
2L	15080821	2L_15080821_SNP [dm3] 2L_15080821_SNP [dm6]	A	G	7.804e^-5	0.414	INTRON CG15270
2L	15115080	2L_15115080_SNP [dm3] 2L_15115080_SNP [dm6]	G	A	7.804e^-5	0.414	NON_SYNONYMOUS_CODING stc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3226988	2L_3226988_SNP [dm3] 2L_3226988_SNP [dm6]	A	T	7.934e^-5	0.414	INTERGENIC
2R	13575617	2R_13575617_SNP [dm3] 2R_17688112_SNP [dm6]	C	T	7.934e^-5	0.414	SYNONYMOUS_CODING HPS4	TF binding site mE1_TFBS_sens
2R	14781232	2R_14781232_SNP [dm3] 2R_18893727_SNP [dm6]	G	T	7.934e^-5	0.414	INTRON sano
2R	14781336	2R_14781336_SNP [dm3] 2R_18893831_SNP [dm6]	A	T	7.934e^-5	0.414	INTRON sano
2R	16996791	2R_16996791_SNP [dm3] 2R_21109286_SNP [dm6]	G	A	7.934e^-5	0.414	INTRON ktub
3R	11443019	3R_11443019_SNP [dm3] 3R_15617297_SNP [dm6]	C	T	7.934e^-5	0.414	INTERGENIC
3R	11443027	3R_11443027_SNP [dm3] 3R_15617305_SNP [dm6]	C	A	7.934e^-5	0.414	INTERGENIC
3L	14865936	3L_14865936_SNP [dm3] 3L_14872836_SNP [dm6]	T	A	7.984e^-5	0.414	INTRON CG17839	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14865939	3L_14865939_SNP [dm3] 3L_14872839_SNP [dm6]	T	G	7.984e^-5	0.414	INTRON CG17839	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14865951	3L_14865951_SNP [dm3] 3L_14872851_SNP [dm6]	T	G	7.984e^-5	0.414	INTRON CG17839	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14866016	3L_14866016_SNP [dm3] 3L_14872916_SNP [dm6]	T	A	7.984e^-5	0.414	INTRON CG17839	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3111268	3L_3111268_SNP [dm3] 3L_3111268_SNP [dm6]	G	T	7.984e^-5	0.414	UPSTREAM CG45066 DOWNSTREAM CG45067 INTERGENIC
2L	10129394	2L_10129394_SNP [dm3] 2L_10129394_SNP [dm6]	G	C	8.096e^-5	0.414	INTRON CG44153	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10129396	2L_10129396_SNP [dm3] 2L_10129396_SNP [dm6]	T	A	8.096e^-5	0.414	INTRON CG44153	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16994360	2R_16994360_SNP [dm3] 2R_21106855_SNP [dm6]	C	T	8.096e^-5	0.414	INTRON ktub	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5521255	3L_5521255_SNP [dm3] 3L_5528155_SNP [dm6]	T	A	8.096e^-5	0.414	INTRON Lkr
3L	5521324	3L_5521324_SNP [dm3] 3L_5528224_SNP [dm6]	G	T	8.096e^-5	0.414	INTRON Lkr
3L	9875936	3L_9875936_SNP [dm3] 3L_9882836_SNP [dm6]	G	A	8.096e^-5	0.414	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
X	5442980	X_5442980_SNP [dm3] X_5548947_SNP [dm6]	T	G	8.096e^-5	0.414	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11416012	2L_11416012_SNP [dm3] 2L_11416012_SNP [dm6]	T	C	8.234e^-5	0.414	INTERGENIC
X	18861119	X_18861119_SNP [dm3] X_18967086_SNP [dm6]	G	C	8.266e^-5	0.414	INTRON CG43759	TF binding site mE1_TFBS_inv
X	13675626	X_13675626_SNP [dm3] X_13781593_SNP [dm6]	A	G	8.517e^-5	0.414	SYNONYMOUS_CODING CtsB1 UPSTREAM CG11103	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	4253907	2L_4253907_SNP [dm3] 2L_4253907_SNP [dm6]	A	C	8.903e^-5	0.414	INTERGENIC
2R	14091123	2R_14091123_SNP [dm3] 2R_18203618_SNP [dm6]	A	G	8.903e^-5	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16049248	2R_16049248_SNP [dm3] 2R_20161743_SNP [dm6]	A	G	8.903e^-5	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16994815	2R_16994815_SNP [dm3] 2R_21107310_SNP [dm6]	C	A	8.903e^-5	0.414	INTRON ktub
2R	5263484	2R_5263484_SNP [dm3] 2R_9375979_SNP [dm6]	A	G	8.903e^-5	0.414	INTRON CG13954
2R	5264469	2R_5264469_SNP [dm3] 2R_9376964_SNP [dm6]	A	G	8.903e^-5	0.414	INTRON CG13954	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5265008	2R_5265008_SNP [dm3] 2R_9377503_SNP [dm6]	A	G	8.903e^-5	0.414	INTRON CG13954
2R	5265058	2R_5265058_SNP [dm3] 2R_9377553_SNP [dm6]	C	A	8.903e^-5	0.414	INTRON CG13954
2R	7950569	2R_7950569_SNP [dm3] 2R_12063064_SNP [dm6]	A	T	8.903e^-5	0.414	DOWNSTREAM Drep-3 INTERGENIC
2R	7950576	2R_7950576_SNP [dm3] 2R_12063071_SNP [dm6]	T	G	8.903e^-5	0.414	DOWNSTREAM Drep-3 INTERGENIC
3L	10688865	3L_10688865_DEL [dm3] 3L_10695765_DEL [dm6]	TTGT	T	8.903e^-5	0.414	INTRON NijA
3L	10688878	3L_10688878_INS [dm3] 3L_10695778_INS [dm6]	C	CT	8.903e^-5	0.414	INTRON NijA
3L	12332188	3L_12332188_SNP [dm3] 3L_12339088_SNP [dm6]	C	T	8.903e^-5	0.414	DOWNSTREAM CrzR INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12332189	3L_12332189_SNP [dm3] 3L_12339089_SNP [dm6]	T	C	8.903e^-5	0.414	DOWNSTREAM CrzR INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14865834	3L_14865834_SNP [dm3] 3L_14872734_SNP [dm6]	T	G	8.903e^-5	0.414	INTRON CG17839	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14865838	3L_14865838_SNP [dm3] 3L_14872738_SNP [dm6]	C	A	8.903e^-5	0.414	INTRON CG17839	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2359020	3L_2359020_SNP [dm3] 3L_2359020_SNP [dm6]	A	G	8.903e^-5	0.414	INTERGENIC
3L	2359032	3L_2359032_SNP [dm3] 3L_2359032_SNP [dm6]	C	A	8.903e^-5	0.414	INTERGENIC
3L	6154590	3L_6154590_SNP [dm3] 3L_6161490_SNP [dm6]	T	C	8.903e^-5	0.414	SYNONYMOUS_CODING Cpr65Az	TF binding site BDTNP1_TFBS_twi
3L	7609304	3L_7609304_SNP [dm3] 3L_7616204_SNP [dm6]	T	G	8.903e^-5	0.414	NON_SYNONYMOUS_CODING CG33275 UTR_5_PRIME CG33275
3L	7928358	3L_7928358_SNP [dm3] 3L_7935258_SNP [dm6]	T	C	8.903e^-5	0.414	INTRON syd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8929804	3L_8929804_SNP [dm3] 3L_8936704_SNP [dm6]	C	T	8.903e^-5	0.414	SYNONYMOUS_CODING CG43783 UTR_5_PRIME CG43783 DOWNSTREAM orb2	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_cad
3L	8930039	3L_8930039_INS [dm3] 3L_8936939_INS [dm6]	A	ATAAGTCCTCACATGATTAG...	8.903e^-5	0.414	UPSTREAM CG43783 DOWNSTREAM orb2 INTRON CG43783
3L	9871899	3L_9871899_SNP [dm3] 3L_9878799_SNP [dm6]	G	A	8.903e^-5	0.414	UPSTREAM CG34382 INTERGENIC	TF binding site mE1_TFBS_inv
3R	14896341	3R_14896341_SNP [dm3] 3R_19070619_SNP [dm6]	T	C	8.903e^-5	0.414	INTRON cdi
3R	19026904	3R_19026904_SNP [dm3] 3R_23201182_SNP [dm6]	A	G	8.903e^-5	0.414	UPSTREAM cnc DOWNSTREAM fzo INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14387966	X_14387966_SNP [dm3] X_14493933_SNP [dm6]	C	T	8.903e^-5	0.414	INTERGENIC
2L	9344778	2L_9344778_SNP [dm3] 2L_9344778_SNP [dm6]	A	G	8.908e^-5	0.414	DOWNSTREAM CG3748 INTERGENIC
2L	12405124	2L_12405124_SNP [dm3] 2L_12405124_SNP [dm6]	C	T	9.105e^-5	0.414	UPSTREAM vir-1 INTRON vir-1
2L	1631825	2L_1631825_SNP [dm3] 2L_1631825_SNP [dm6]	G	T	9.105e^-5	0.414	INTERGENIC
2L	10512920	2L_10512920_SNP [dm3] 2L_10512920_SNP [dm6]	A	T	9.195e^-5	0.414	INTRON Fatp & 1 other	TF binding site mE1_TFBS_cad
2L	14574964	2L_14574964_SNP [dm3] 2L_14574964_SNP [dm6]	T	C	9.195e^-5	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	14639412	2L_14639412_SNP [dm3] 2L_14639412_SNP [dm6]	G	A	9.195e^-5	0.414	INTRON osp
2L	14641759	2L_14641759_SNP [dm3] 2L_14641759_SNP [dm6]	G	A	9.195e^-5	0.414	INTRON osp
2L	18626013	2L_18626013_SNP [dm3] 2L_18626013_SNP [dm6]	C	T	9.195e^-5	0.414	INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9174796	2L_9174796_SNP [dm3] 2L_9174796_SNP [dm6]	C	T	9.195e^-5	0.414	INTRON tai
2L	9174803	2L_9174803_SNP [dm3] 2L_9174803_SNP [dm6]	A	T	9.195e^-5	0.414	INTRON tai
2L	9174804	2L_9174804_SNP [dm3] 2L_9174804_SNP [dm6]	A	G	9.195e^-5	0.414	INTRON tai
2L	9174808	2L_9174808_SNP [dm3] 2L_9174808_SNP [dm6]	A	G	9.195e^-5	0.414	INTRON tai
2L	9174832	2L_9174832_SNP [dm3] 2L_9174832_SNP [dm6]	A	G	9.195e^-5	0.414	INTRON tai
2L	9335768	2L_9335768_INS [dm3] 2L_9335768_INS [dm6]	TTTCT	CAGAAACA	9.195e^-5	0.414	INTRON Eaat1
2L	9335814	2L_9335814_SNP [dm3] 2L_9335814_SNP [dm6]	C	A	9.195e^-5	0.414	INTRON Eaat1
2R	10723729	2R_10723729_SNP [dm3] 2R_14836224_SNP [dm6]	C	T	9.195e^-5	0.414	INTERGENIC
2R	11954107	2R_11954107_SNP [dm3] 2R_16066602_SNP [dm6]	T	G	9.195e^-5	0.414	INTERGENIC
2R	11958817	2R_11958817_SNP [dm3] 2R_16071312_SNP [dm6]	G	A	9.195e^-5	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12874860	2R_12874860_SNP [dm3] 2R_16987355_SNP [dm6]	G	A	9.195e^-5	0.414	INTRON Cbp53E
2R	13640182	2R_13640182_SNP [dm3] 2R_17752677_SNP [dm6]	T	C	9.195e^-5	0.414	DOWNSTREAM CG6385 INTRON CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13901487	2R_13901487_DEL [dm3] 2R_18013982_DEL [dm6]	ACTGTAAATCTAATCA...	A	9.195e^-5	0.414	INTERGENIC
2R	14179354	2R_14179354_SNP [dm3] 2R_18291849_SNP [dm6]	C	T	9.195e^-5	0.414	UPSTREAM CG14502 INTRON CG14502 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	14662092	2R_14662092_SNP [dm3] 2R_18774587_SNP [dm6]	A	T	9.195e^-5	0.414	UTR_3_PRIME Mctp UPSTREAM CR43964
2R	14874943	2R_14874943_SNP [dm3] 2R_18987438_SNP [dm6]	T	C	9.195e^-5	0.414	UTR_5_PRIME tn
2R	15684646	2R_15684646_SNP [dm3] 2R_19797141_SNP [dm6]	A	T	9.195e^-5	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16049376	2R_16049376_SNP [dm3] 2R_20161871_SNP [dm6]	G	T	9.195e^-5	0.414	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16122292	2R_16122292_SNP [dm3] 2R_20234787_SNP [dm6]	T	A	9.195e^-5	0.414	SYNONYMOUS_CODING CG11044 UPSTREAM CG44624 & 1 other
2R	16122322	2R_16122322_SNP [dm3] 2R_20234817_SNP [dm6]	G	A	9.195e^-5	0.414	SYNONYMOUS_CODING CG11044 UPSTREAM CG44624 & 1 other
2R	16122368	2R_16122368_SNP [dm3] 2R_20234863_SNP [dm6]	G	A	9.195e^-5	0.414	UTR_3_PRIME CG11044 UPSTREAM CG44624 & 1 other
2R	17144851	2R_17144851_SNP [dm3] 2R_21257346_SNP [dm6]	G	T	9.195e^-5	0.414	UTR_5_PRIME Rgk3 INTRON Rgk3
2R	17582128	2R_17582128_SNP [dm3] 2R_21694623_SNP [dm6]	G	A	9.195e^-5	0.414	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad
2R	18438086	2R_18438086_SNP [dm3] 2R_22550581_SNP [dm6]	T	C	9.195e^-5	0.414	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad
2R	18555905	2R_18555905_SNP [dm3] 2R_22668400_SNP [dm6]	A	T	9.195e^-5	0.414	UPSTREAM CG13516 DOWNSTREAM CG30273 INTRON CG30269	TF binding site mE1_TFBS_cad
2R	18555908	2R_18555908_SNP [dm3] 2R_22668403_SNP [dm6]	G	A	9.195e^-5	0.414	UPSTREAM CG13516 DOWNSTREAM CG30273 INTRON CG30269	TF binding site mE1_TFBS_cad
2R	4687562	2R_4687562_SNP [dm3] 2R_8800057_SNP [dm6]	G	A	9.195e^-5	0.414	INTRON sns	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	7540682	2R_7540682_SNP [dm3] 2R_11653177_SNP [dm6]	G	A	9.195e^-5	0.414	UPSTREAM tRNA:CR30254 DOWNSTREAM CG34228 & 1 other INTRON Roc2	TF binding site mE1_TFBS_cad
2R	9682097	2R_9682097_SNP [dm3] 2R_13794592_SNP [dm6]	G	A	9.195e^-5	0.414	UPSTREAM Cpr50Cb INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	11471549	3L_11471549_DEL [dm3] 3L_11478449_DEL [dm6]	AGT	A	9.195e^-5	0.414	INTERGENIC
3L	14114813	3L_14114813_SNP [dm3] 3L_14121713_SNP [dm6]	C	T	9.195e^-5	0.414	INTRON Sox21b	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	17456139	3L_17456139_SNP [dm3] 3L_17463039_SNP [dm6]	G	C	9.195e^-5	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17631323	3L_17631323_SNP [dm3] 3L_17638223_SNP [dm6]	T	A	9.195e^-5	0.414	UTR_3_PRIME Pep DOWNSTREAM CG7497	TF binding site mE1_TFBS_cad
3L	17940302	3L_17940302_SNP [dm3] 3L_17947202_SNP [dm6]	C	T	9.195e^-5	0.414	EXON CR45393
3L	17940303	3L_17940303_SNP [dm3] 3L_17947203_SNP [dm6]	T	C	9.195e^-5	0.414	EXON CR45393
3L	18850422	3L_18850422_SNP [dm3] 3L_18857322_SNP [dm6]	G	A	9.195e^-5	0.414	EXON CR45388
3L	18850655	3L_18850655_SNP [dm3] 3L_18857555_SNP [dm6]	C	T	9.195e^-5	0.414	EXON CR45388
3L	4121154	3L_4121154_SNP [dm3] 3L_4121154_SNP [dm6]	G	C	9.195e^-5	0.414	INTRON Chd64
3L	4586928	3L_4586928_SNP [dm3] 3L_4586928_SNP [dm6]	T	A	9.195e^-5	0.414	INTRON CG42540
3L	4586930	3L_4586930_SNP [dm3] 3L_4586930_SNP [dm6]	A	G	9.195e^-5	0.414	INTRON CG42540
3L	4586991	3L_4586991_SNP [dm3] 3L_4586991_SNP [dm6]	G	A	9.195e^-5	0.414	INTRON CG42540
3L	4586997	3L_4586997_DEL [dm3] 3L_4586997_DEL [dm6]	CT	A	9.195e^-5	0.414	INTRON CG42540
3L	4587029	3L_4587029_SNP [dm3] 3L_4587029_SNP [dm6]	T	C	9.195e^-5	0.414	INTRON CG42540
3L	4587043	3L_4587043_DEL [dm3] 3L_4587043_DEL [dm6]	AA	A	9.195e^-5	0.414	INTRON CG42540
3L	4587048	3L_4587048_SNP [dm3] 3L_4587048_SNP [dm6]	T	A	9.195e^-5	0.414	INTRON CG42540
3L	4587050	3L_4587050_SNP [dm3] 3L_4587050_SNP [dm6]	G	T	9.195e^-5	0.414	INTRON CG42540
3L	4587052	3L_4587052_SNP [dm3] 3L_4587052_SNP [dm6]	T	A	9.195e^-5	0.414	INTRON CG42540
3L	4587053	3L_4587053_DEL [dm3] 3L_4587053_DEL [dm6]	GCTGTTTCCAACT...	G	9.195e^-5	0.414	INTRON CG42540
3L	4587068	3L_4587068_DEL [dm3] 3L_4587068_DEL [dm6]	ACAAAATTCTAATAAGGT...	A	9.195e^-5	0.414	INTRON CG42540
3L	5542105	3L_5542105_SNP [dm3] 3L_5549005_SNP [dm6]	T	A	9.195e^-5	0.414	INTRON CG10625
3L	6447789	3L_6447789_SNP [dm3] 3L_6454689_SNP [dm6]	C	T	9.195e^-5	0.414	INTRON CG42747
3L	6793188	3L_6793188_SNP [dm3] 3L_6800088_SNP [dm6]	C	A	9.195e^-5	0.414	INTERGENIC	enhancer mE1_CBP_Enhancers
3L	6969932	3L_6969932_SNP [dm3] 3L_6976832_SNP [dm6]	G	T	9.195e^-5	0.414	INTRON Galphai EXON CR32385	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11385342	3R_11385342_SNP [dm3] 3R_15559620_SNP [dm6]	T	C	9.195e^-5	0.414	INTERGENIC
3R	11535515	3R_11535515_SNP [dm3] 3R_15709793_SNP [dm6]	C	A	9.195e^-5	0.414	INTERGENIC
3R	17082272	3R_17082272_SNP [dm3] 3R_21256550_SNP [dm6]	A	T	9.195e^-5	0.414	INTRON ETHR
3R	17082356	3R_17082356_SNP [dm3] 3R_21256634_SNP [dm6]	A	G	9.195e^-5	0.414	INTRON ETHR
3R	17747302	3R_17747302_SNP [dm3] 3R_21921580_SNP [dm6]	T	C	9.195e^-5	0.414	INTERGENIC
3R	17778953	3R_17778953_SNP [dm3] 3R_21953231_SNP [dm6]	C	T	9.195e^-5	0.414	INTRON Eip93F
3R	17779707	3R_17779707_SNP [dm3] 3R_21953985_SNP [dm6]	G	C	9.195e^-5	0.414	INTRON Eip93F
3R	17779821	3R_17779821_SNP [dm3] 3R_21954099_SNP [dm6]	C	T	9.195e^-5	0.414	INTRON Eip93F
3R	17780558	3R_17780558_SNP [dm3] 3R_21954836_SNP [dm6]	A	G	9.195e^-5	0.414	INTRON Eip93F
3R	17780559	3R_17780559_SNP [dm3] 3R_21954837_SNP [dm6]	A	T	9.195e^-5	0.414	INTRON Eip93F
3R	24628976	3R_24628976_SNP [dm3] 3R_28803254_SNP [dm6]	C	G	9.195e^-5	0.414	INTERGENIC
3R	24629106	3R_24629106_SNP [dm3] 3R_28803384_SNP [dm6]	C	A	9.195e^-5	0.414	INTERGENIC
3R	24637130	3R_24637130_SNP [dm3] 3R_28811408_SNP [dm6]	A	T	9.195e^-5	0.414	UPSTREAM CG1646 & 1 other INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	24644041	3R_24644041_SNP [dm3] 3R_28818319_SNP [dm6]	T	A	9.195e^-5	0.414	NON_SYNONYMOUS_CODING CG1523 DOWNSTREAM CG1646	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24646625	3R_24646625_SNP [dm3] 3R_28820903_SNP [dm6]	C	T	9.195e^-5	0.414	NON_SYNONYMOUS_CODING CG1647
3R	24649563	3R_24649563_SNP [dm3] 3R_28823841_SNP [dm6]	A	G	9.195e^-5	0.414	NON_SYNONYMOUS_CODING CG1647 DOWNSTREAM WASp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24650978	3R_24650978_SNP [dm3] 3R_28825256_SNP [dm6]	T	C	9.195e^-5	0.414	UTR_3_PRIME WASp DOWNSTREAM CG1647
3R	24776611	3R_24776611_SNP [dm3] 3R_28950889_SNP [dm6]	G	A	9.195e^-5	0.414	INTRON CG14521
3R	25299520	3R_25299520_SNP [dm3] 3R_29473798_SNP [dm6]	T	C	9.195e^-5	0.414	INTRON Ptp99A
3R	26031564	3R_26031564_DEL [dm3] 3R_30205842_DEL [dm6]	GGTT	A	9.195e^-5	0.414	DOWNSTREAM RpS7 & 1 other INTERGENIC
3R	26974453	3R_26974453_SNP [dm3] 3R_31148731_SNP [dm6]	T	C	9.195e^-5	0.414	INTRON Gycbeta100B
3R	27121669	3R_27121669_DEL [dm3] 3R_31295947_DEL [dm6]	ATA	A	9.195e^-5	0.414	INTERGENIC
3R	6504753	3R_6504753_SNP [dm3] 3R_10679031_SNP [dm6]	T	C	9.195e^-5	0.414	INTRON CG14688	TF binding site mE1_TFBS_chinmo
X	10388021	X_10388021_SNP [dm3] X_10493988_SNP [dm6]	A	G	9.195e^-5	0.414	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	15425936	X_15425936_SNP [dm3] X_15531903_SNP [dm6]	T	G	9.195e^-5	0.414	INTRON Ac13E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18022398	X_18022398_SNP [dm3] X_18128365_SNP [dm6]	G	A	9.195e^-5	0.414	DOWNSTREAM mir-210 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	20291789	X_20291789_SNP [dm3] X_20420762_SNP [dm6]	A	C	9.195e^-5	0.414	DOWNSTREAM Pp4-19C INTRON Obp19d	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20291801	X_20291801_SNP [dm3] X_20420774_SNP [dm6]	T	C	9.195e^-5	0.414	DOWNSTREAM Pp4-19C INTRON Obp19d	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20294159	X_20294159_SNP [dm3] X_20423132_SNP [dm6]	C	T	9.195e^-5	0.414	UPSTREAM Pp4-19C & 1 other INTRON Pp4-19C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	20294738	X_20294738_SNP [dm3] X_20423711_SNP [dm6]	G	C	9.195e^-5	0.414	START_GAINED Pp4-19C UTR_5_PRIME Pp4-19C UPSTREAM Pp4-19C & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	20294877	X_20294877_SNP [dm3] X_20423850_SNP [dm6]	T	A	9.195e^-5	0.414	UTR_5_PRIME Pp4-19C UPSTREAM Pp4-19C & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	2069512	X_2069512_SNP [dm3] X_2175479_SNP [dm6]	G	T	9.195e^-5	0.414	UPSTREAM Cyp4d2 & 1 other DOWNSTREAM CR44690 EXON CR45479
X	3420472	X_3420472_SNP [dm3] X_3526439_SNP [dm6]	G	C	9.195e^-5	0.414	INTRON CG32791
X	5571532	X_5571532_DEL [dm3] X_5677499_DEL [dm6]	AA	A	9.195e^-5	0.414	UPSTREAM Tre1 INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	6720459	X_6720459_SNP [dm3] X_6826426_SNP [dm6]	G	T	9.195e^-5	0.414	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9875378	X_9875378_SNP [dm3] X_9981345_SNP [dm6]	G	A	9.195e^-5	0.414	UPSTREAM CG15252 INTERGENIC
3L	14228749	3L_14228749_SNP [dm3] 3L_14235649_SNP [dm6]	A	T	9.403e^-5	0.414	UTR_5_PRIME CG34244 UPSTREAM CG7906	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	19133134	3L_19133134_SNP [dm3] 3L_19140034_SNP [dm6]	A	T	9.403e^-5	0.414	DOWNSTREAM fz2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
3L	19133135	3L_19133135_SNP [dm3] 3L_19140035_SNP [dm6]	A	T	9.403e^-5	0.414	DOWNSTREAM fz2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
3L	19133243	3L_19133243_SNP [dm3] 3L_19140143_SNP [dm6]	G	A	9.403e^-5	0.414	DOWNSTREAM fz2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
3L	4326936	3L_4326936_SNP [dm3] 3L_4326936_SNP [dm6]	G	A	9.403e^-5	0.414	INTRON Cip4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6164871	3L_6164871_SNP [dm3] 3L_6171771_SNP [dm6]	C	T	9.403e^-5	0.414	SYNONYMOUS_CODING CG10289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	9610871	3L_9610871_SNP [dm3] 3L_9617771_SNP [dm6]	T	C	9.403e^-5	0.414	SPLICE_SITE_REGION LanB2 INTRON LanB2
3R	2654853	3R_2654853_SNP [dm3] 3R_6829131_SNP [dm6]	G	A	9.403e^-5	0.414	INTRON Scr	regulatory region REDfly_CRMs
X	18891746	X_18891746_SNP [dm3] X_18997713_SNP [dm6]	C	G	9.403e^-5	0.414	INTRON CG43759
2R	16648736	2R_16648736_SNP [dm3] 2R_20761231_SNP [dm6]	T	A	9.553e^-5	0.414	INTERGENIC
2L	12391652	2L_12391652_DEL [dm3] 2L_12391652_DEL [dm6]	GTTCCTTCG	G	9.723e^-5	0.414	INTRON bru-2
2L	12391697	2L_12391697_SNP [dm3] 2L_12391697_SNP [dm6]	A	G	9.723e^-5	0.414	INTRON bru-2
3R	16551663	3R_16551663_SNP [dm3] 3R_20725941_SNP [dm6]	G	T	9.918e^-5	0.414	INTERGENIC
3R	19395056	3R_19395056_INS [dm3] 3R_23569334_INS [dm6]	T	TGT	9.925e^-5	0.414	INTRON beat-IV
3R	19395064	3R_19395064_SNP [dm3] 3R_23569342_SNP [dm6]	A	T	9.925e^-5	0.414	INTRON beat-IV
2R	11470383	2R_11470383_SNP [dm3] 2R_15582878_SNP [dm6]	A	C	9.979e^-5	0.414	INTERGENIC
3R	3779050	3R_3779050_SNP [dm3] 3R_7953328_SNP [dm6]	A	T	9.979e^-5	0.414	INTRON dsx
3L	1183028	3L_1183028_SNP [dm3] 3L_1183028_SNP [dm6]	T	A	1.013e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	22333152	X_22333152_SNP [dm3] X_22931316_SNP [dm6]	G	C	1.031e^-4	0.414	INTERGENIC	transposable element FlyBase
X	16655902	X_16655902_SNP [dm3] X_16761869_SNP [dm6]	G	T	1.046e^-4	0.414	INTRON if
3L	10588528	3L_10588528_SNP [dm3] 3L_10595428_SNP [dm6]	T	C	1.051e^-4	0.414	INTERGENIC
3L	14419487	3L_14419487_SNP [dm3] 3L_14426387_SNP [dm6]	A	C	1.051e^-4	0.414	INTRON bbg
3L	19141769	3L_19141769_SNP [dm3] 3L_19148669_SNP [dm6]	T	A	1.051e^-4	0.414	INTRON fz2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8963015	3L_8963015_SNP [dm3] 3L_8969915_SNP [dm6]	T	C	1.051e^-4	0.414	INTRON CG5026	TF binding site mE1_TFBS_chinmo
3R	19611898	3R_19611898_SNP [dm3] 3R_23786176_SNP [dm6]	A	G	1.051e^-4	0.414	INTRON mbc
3R	19611913	3R_19611913_SNP [dm3] 3R_23786191_SNP [dm6]	A	G	1.051e^-4	0.414	INTRON mbc
3R	19612001	3R_19612001_SNP [dm3] 3R_23786279_SNP [dm6]	T	C	1.051e^-4	0.414	INTRON mbc
3R	19612011	3R_19612011_SNP [dm3] 3R_23786289_SNP [dm6]	A	G	1.051e^-4	0.414	INTRON mbc
3R	19612129	3R_19612129_SNP [dm3] 3R_23786407_SNP [dm6]	C	G	1.051e^-4	0.414	INTRON mbc
3R	24385179	3R_24385179_SNP [dm3] 3R_28559457_SNP [dm6]	A	G	1.051e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24794662	3R_24794662_SNP [dm3] 3R_28968940_SNP [dm6]	C	G	1.051e^-4	0.414	INTRON CG14521
2L	1104925	2L_1104925_SNP [dm3] 2L_1104925_SNP [dm6]	A	G	1.088e^-4	0.414	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1107085	2L_1107085_SNP [dm3] 2L_1107085_SNP [dm6]	T	C	1.088e^-4	0.414	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_sens
2L	14633039	2L_14633039_SNP [dm3] 2L_14633039_SNP [dm6]	G	A	1.088e^-4	0.414	INTRON osp
2L	17604486	2L_17604486_SNP [dm3] 2L_17604486_SNP [dm6]	A	G	1.088e^-4	0.414	DOWNSTREAM Sytalpha INTERGENIC
2L	7148339	2L_7148339_SNP [dm3] 2L_7148339_SNP [dm6]	C	T	1.088e^-4	0.414	INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	1466476	2L_1466476_SNP [dm3] 2L_1466476_SNP [dm6]	C	T	1.137e^-4	0.414	INTERGENIC
2R	18438446	2R_18438446_SNP [dm3] 2R_22550941_SNP [dm6]	A	T	1.142e^-4	0.414	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	21939110	2L_21939110_SNP [dm3] 2L_21939110_SNP [dm6]	C	G	1.176e^-4	0.414	INTERGENIC
3R	16551688	3R_16551688_SNP [dm3] 3R_20725966_SNP [dm6]	A	G	1.177e^-4	0.414	INTERGENIC
2R	6338696	2R_6338696_SNP [dm3] 2R_10451191_SNP [dm6]	T	C	1.202e^-4	0.414	INTRON Galphao & 1 other
3L	10623547	3L_10623547_SNP [dm3] 3L_10630447_SNP [dm6]	T	G	1.202e^-4	0.414	SYNONYMOUS_CODING CG42535 UPSTREAM CG42536 & 2 others	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_run
3L	12932810	3L_12932810_SNP [dm3] 3L_12939710_SNP [dm6]	A	G	1.202e^-4	0.414	INTERGENIC
3L	3104913	3L_3104913_SNP [dm3] 3L_3104913_SNP [dm6]	A	T	1.202e^-4	0.414	INTRON Cht7
3L	8741469	3L_8741469_SNP [dm3] 3L_8748369_SNP [dm6]	C	A	1.202e^-4	0.414	DOWNSTREAM CG13306 INTERGENIC
3R	14098563	3R_14098563_SNP [dm3] 3R_18272841_SNP [dm6]	C	T	1.202e^-4	0.414	SYNONYMOUS_CODING Vps39	TF binding site mE1_TFBS_chinmo
3R	14098566	3R_14098566_SNP [dm3] 3R_18272844_SNP [dm6]	C	G	1.202e^-4	0.414	SYNONYMOUS_CODING Vps39	TF binding site mE1_TFBS_chinmo
3R	21985887	3R_21985887_SNP [dm3] 3R_26160165_SNP [dm6]	A	G	1.202e^-4	0.414	INTERGENIC
3R	21985891	3R_21985891_SNP [dm3] 3R_26160169_SNP [dm6]	T	G	1.202e^-4	0.414	INTERGENIC
3R	21985976	3R_21985976_SNP [dm3] 3R_26160254_SNP [dm6]	T	G	1.202e^-4	0.414	INTERGENIC
3R	4294500	3R_4294500_SNP [dm3] 3R_8468778_SNP [dm6]	G	C	1.202e^-4	0.414	INTRON CG45263	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	11570498	X_11570498_SNP [dm3] X_11676465_SNP [dm6]	G	A	1.202e^-4	0.414	UTR_3_PRIME Ptp10D DOWNSTREAM Ptp10D & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	14028239	X_14028239_SNP [dm3] X_14134206_SNP [dm6]	C	T	1.202e^-4	0.414	INTERGENIC
X	14028249	X_14028249_SNP [dm3] X_14134216_SNP [dm6]	A	G	1.202e^-4	0.414	INTERGENIC
X	14509010	X_14509010_INS [dm3] X_14614977_INS [dm6]	A	ACATTTTA	1.202e^-4	0.414	INTRON NetA	TF binding site BDTNP1_TFBS_da
X	16933857	X_16933857_SNP [dm3] X_17039824_SNP [dm6]	A	C	1.202e^-4	0.414	INTRON CG45002
X	6334663	X_6334663_SNP [dm3] X_6440630_SNP [dm6]	G	A	1.202e^-4	0.414	INTRON CG42340
3L	19153600	3L_19153600_SNP [dm3] 3L_19160500_SNP [dm6]	A	G	1.211e^-4	0.414	INTRON fz2
3L	9243137	3L_9243137_SNP [dm3] 3L_9250037_SNP [dm6]	G	C	1.211e^-4	0.414	UPSTREAM CG4477 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9243277	3L_9243277_SNP [dm3] 3L_9250177_SNP [dm6]	A	G	1.211e^-4	0.414	UPSTREAM CG4477 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9243313	3L_9243313_SNP [dm3] 3L_9250213_SNP [dm6]	T	A	1.211e^-4	0.414	UPSTREAM CG4477 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	19099605	3L_19099605_SNP [dm3] 3L_19106505_SNP [dm6]	A	T	1.213e^-4	0.414	UTR_3_PRIME CG14082 DOWNSTREAM CG14082
3R	13133143	3R_13133143_SNP [dm3] 3R_17307421_SNP [dm6]	T	G	1.213e^-4	0.414	INTERGENIC
3R	10183685	3R_10183685_SNP [dm3] 3R_14357963_SNP [dm6]	C	T	1.254e^-4	0.414	DOWNSTREAM CG31320 INTRON NK7.1
2L	17109257	2L_17109257_SNP [dm3] 2L_17109257_SNP [dm6]	A	G	1.264e^-4	0.414	INTERGENIC
2L	17109275	2L_17109275_SNP [dm3] 2L_17109275_SNP [dm6]	C	A	1.264e^-4	0.414	INTERGENIC
3L	11450087	3L_11450087_SNP [dm3] 3L_11456987_SNP [dm6]	C	T	1.279e^-4	0.414	DOWNSTREAM CG12289 INTERGENIC
3L	11450098	3L_11450098_SNP [dm3] 3L_11456998_SNP [dm6]	T	C	1.279e^-4	0.414	DOWNSTREAM CG12289 INTERGENIC
3L	11450100	3L_11450100_SNP [dm3] 3L_11457000_SNP [dm6]	T	A	1.279e^-4	0.414	DOWNSTREAM CG12289 INTERGENIC
2L	1107783	2L_1107783_SNP [dm3] 2L_1107783_SNP [dm6]	T	A	1.287e^-4	0.414	UPSTREAM CG14339 INTRON mtRNApol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
2L	1109003	2L_1109003_SNP [dm3] 2L_1109003_SNP [dm6]	T	C	1.287e^-4	0.414	SYNONYMOUS_CODING CG14339 UPSTREAM mtRNApol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2L	14340774	2L_14340774_SNP [dm3] 2L_14340774_SNP [dm6]	A	G	1.287e^-4	0.414	DOWNSTREAM CG15286 INTRON CG33090
2L	14707863	2L_14707863_SNP [dm3] 2L_14707863_SNP [dm6]	C	T	1.287e^-4	0.414	INTERGENIC
2L	17636290	2L_17636290_SNP [dm3] 2L_17636290_SNP [dm6]	A	G	1.287e^-4	0.414	INTERGENIC
2L	8720294	2L_8720294_SNP [dm3] 2L_8720294_SNP [dm6]	A	G	1.287e^-4	0.414	INTRON raw
2L	14274932	2L_14274932_SNP [dm3] 2L_14274932_SNP [dm6]	C	T	1.299e^-4	0.414	UTR_5_PRIME CG32971 UPSTREAM CR44729 INTRON wb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19372411	2L_19372411_SNP [dm3] 2L_19372411_SNP [dm6]	A	G	1.299e^-4	0.414	SYNONYMOUS_CODING CG17349
3L	14865985	3L_14865985_SNP [dm3] 3L_14872885_SNP [dm6]	A	G	1.308e^-4	0.414	INTRON CG17839	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16824261	3R_16824261_SNP [dm3] 3R_20998539_SNP [dm6]	G	A	1.308e^-4	0.414	INTRON Calx
3R	24794544	3R_24794544_SNP [dm3] 3R_28968822_SNP [dm6]	C	G	1.308e^-4	0.414	INTRON CG14521
2L	17642271	2L_17642271_SNP [dm3] 2L_17642271_SNP [dm6]	T	C	1.312e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5239391	2L_5239391_SNP [dm3] 2L_5239391_SNP [dm6]	A	T	1.314e^-4	0.414	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	21911657	2L_21911657_SNP [dm3] 2L_21911657_SNP [dm6]	C	T	1.319e^-4	0.414	INTERGENIC
2L	21934165	2L_21934165_SNP [dm3] 2L_21934165_SNP [dm6]	T	G	1.319e^-4	0.414	INTERGENIC
3L	10524644	3L_10524644_DEL [dm3] 3L_10531544_DEL [dm6]	GCGGTTG	G	1.319e^-4	0.414	INTRON A2bp1
3L	14203050	3L_14203050_SNP [dm3] 3L_14209950_SNP [dm6]	A	T	1.319e^-4	0.414	INTRON nuf
3L	14203064	3L_14203064_SNP [dm3] 3L_14209964_SNP [dm6]	G	T	1.319e^-4	0.414	INTRON nuf
3L	14336347	3L_14336347_SNP [dm3] 3L_14343247_SNP [dm6]	C	A	1.319e^-4	0.414	INTRON fz
3L	4121163	3L_4121163_SNP [dm3] 3L_4121163_SNP [dm6]	T	A	1.319e^-4	0.414	INTRON Chd64
3L	6299889	3L_6299889_SNP [dm3] 3L_6306789_SNP [dm6]	G	A	1.319e^-4	0.414	DOWNSTREAM CR45113 INTERGENIC
3R	16811645	3R_16811645_SNP [dm3] 3R_20985923_SNP [dm6]	G	T	1.319e^-4	0.414	UPSTREAM Calx DOWNSTREAM CG43446 INTRON Calx
X	6413506	X_6413506_SNP [dm3] X_6519473_SNP [dm6]	G	C	1.319e^-4	0.414	INTRON CG42340
X	6413509	X_6413509_SNP [dm3] X_6519476_SNP [dm6]	T	C	1.319e^-4	0.414	INTRON CG42340
2L	13448369	2L_13448369_SNP [dm3] 2L_13448369_SNP [dm6]	C	G	1.322e^-4	0.414	NON_SYNONYMOUS_CODING Hsp60D INTRON CG42784
2R	4471211	2R_4471211_SNP [dm3] 2R_8583706_SNP [dm6]	C	T	1.322e^-4	0.414	UTR_5_PRIME CG42326
2R	4687673	2R_4687673_SNP [dm3] 2R_8800168_SNP [dm6]	T	C	1.322e^-4	0.414	INTRON sns	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	443435	2L_443435_SNP [dm3] 2L_443435_SNP [dm6]	T	C	1.322e^-4	0.414	SYNONYMOUS_CODING ex
2L	443477	2L_443477_SNP [dm3] 2L_443477_SNP [dm6]	A	G	1.322e^-4	0.414	SYNONYMOUS_CODING ex
2L	443488	2L_443488_SNP [dm3] 2L_443488_SNP [dm6]	C	T	1.322e^-4	0.414	NON_SYNONYMOUS_CODING ex	TF binding site mE1_TFBS_sens
2L	20115949	2L_20115949_SNP [dm3] 2L_20115949_SNP [dm6]	C	A	1.362e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20115979	2L_20115979_SNP [dm3] 2L_20115979_SNP [dm6]	C	A	1.362e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17216217	3R_17216217_SNP [dm3] 3R_21390495_SNP [dm6]	T	C	1.391e^-4	0.414	DOWNSTREAM bap INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10127762	2L_10127762_INS [dm3] 2L_10127762_INS [dm6]	T	TCCCATATATATGTGAGT...	1.395e^-4	0.414	SPLICE_SITE_REGION CG44153 INTRON CG44153
2L	1479917	2L_1479917_INS [dm3] 2L_1479917_INS [dm6]	C	TAT	1.395e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14959397	2L_14959397_SNP [dm3] 2L_14959397_SNP [dm6]	T	A	1.395e^-4	0.414	INTRON CG42313
2L	14960476	2L_14960476_SNP [dm3] 2L_14960476_SNP [dm6]	G	A	1.395e^-4	0.414	INTRON CG42313
2L	14962060	2L_14962060_SNP [dm3] 2L_14962060_SNP [dm6]	T	A	1.395e^-4	0.414	INTRON CG42313	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16757711	2L_16757711_SNP [dm3] 2L_16757711_SNP [dm6]	T	C	1.395e^-4	0.414	SYNONYMOUS_CODING yellow-b DOWNSTREAM ppk17
2L	19207579	2L_19207579_SNP [dm3] 2L_19207579_SNP [dm6]	T	C	1.395e^-4	0.414	INTRON drl
2L	20403240	2L_20403240_SNP [dm3] 2L_20403240_SNP [dm6]	C	A	1.395e^-4	0.414	INTRON CG10947
2L	613627	2L_613627_SNP [dm3] 2L_613627_SNP [dm6]	C	A	1.395e^-4	0.414	INTERGENIC
X	17675924	X_17675924_SNP [dm3] X_17781891_SNP [dm6]	T	C	1.395e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	18022065	X_18022065_SNP [dm3] X_18128032_SNP [dm6]	T	C	1.395e^-4	0.414	UPSTREAM mir-210 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18022067	X_18022067_SNP [dm3] X_18128034_SNP [dm6]	G	C	1.395e^-4	0.414	UPSTREAM mir-210 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9504514	3L_9504514_SNP [dm3] 3L_9511414_SNP [dm6]	G	A	1.453e^-4	0.414	UPSTREAM snoRNA:Me28S-G3253 & 1 other DOWNSTREAM CG33703 INTRON RpS9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9344630	2L_9344630_SNP [dm3] 2L_9344630_SNP [dm6]	G	T	1.459e^-4	0.414	UTR_3_PRIME CG3748 DOWNSTREAM CG3748
3L	10379156	3L_10379156_SNP [dm3] 3L_10386056_SNP [dm6]	G	C	1.459e^-4	0.414	UPSTREAM CR45245 INTERGENIC
3L	14167090	3L_14167090_SNP [dm3] 3L_14173990_SNP [dm6]	A	C	1.459e^-4	0.414	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14524096	3L_14524096_SNP [dm3] 3L_14530996_SNP [dm6]	A	G	1.459e^-4	0.414	INTRON bbg
3L	15253928	3L_15253928_SNP [dm3] 3L_15260828_SNP [dm6]	G	A	1.459e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_cad
3L	15253944	3L_15253944_INS [dm3] 3L_15260844_INS [dm6]	A	AAATTCA	1.459e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_cad
3L	15253947	3L_15253947_INS [dm3] 3L_15260847_INS [dm6]	A	ATTCATAAAATT...	1.459e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_cad
3L	15466826	3L_15466826_SNP [dm3] 3L_15473726_SNP [dm6]	A	T	1.459e^-4	0.414	UTR_5_PRIME CG7804
3L	16278381	3L_16278381_SNP [dm3] 3L_16285281_SNP [dm6]	G	A	1.459e^-4	0.414	INTRON CG13047	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18252827	3L_18252827_SNP [dm3] 3L_18259727_SNP [dm6]	T	C	1.459e^-4	0.414	INTERGENIC
3L	18578737	3L_18578737_SNP [dm3] 3L_18585637_SNP [dm6]	C	T	1.459e^-4	0.414	INTERGENIC
3L	2042551	3L_2042551_SNP [dm3] 3L_2042551_SNP [dm6]	A	C	1.459e^-4	0.414	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad
3L	2330998	3L_2330998_SNP [dm3] 3L_2330998_SNP [dm6]	G	C	1.459e^-4	0.414	INTRON MsR1
3L	2331004	3L_2331004_SNP [dm3] 3L_2331004_SNP [dm6]	A	G	1.459e^-4	0.414	INTRON MsR1
3L	5586816	3L_5586816_SNP [dm3] 3L_5593716_SNP [dm6]	A	G	1.459e^-4	0.414	SYNONYMOUS_CODING CG10592	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
3L	7739660	3L_7739660_SNP [dm3] 3L_7746560_SNP [dm6]	T	A	1.459e^-4	0.414	UPSTREAM CG13685 INTRON CG32373
3R	19706781	3R_19706781_SNP [dm3] 3R_23881059_SNP [dm6]	C	T	1.459e^-4	0.414	INTRON Pli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl
2L	11032468	2L_11032468_SNP [dm3] 2L_11032468_SNP [dm6]	C	A	1.472e^-4	0.414	INTRON Samuel
3R	26158754	3R_26158754_SNP [dm3] 3R_30333032_SNP [dm6]	G	A	1.521e^-4	0.414	INTRON hdc
3L	10219716	3L_10219716_SNP [dm3] 3L_10226616_SNP [dm6]	A	C	1.522e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8527902	3L_8527902_SNP [dm3] 3L_8534802_SNP [dm6]	T	C	1.537e^-4	0.414	UPSTREAM ergic53 DOWNSTREAM foi INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
2R	13827646	2R_13827646_SNP [dm3] 2R_17940141_SNP [dm6]	T	A	1.542e^-4	0.414	INTERGENIC
2R	13827681	2R_13827681_SNP [dm3] 2R_17940176_SNP [dm6]	T	C	1.542e^-4	0.414	INTERGENIC
2R	18301876	2R_18301876_SNP [dm3] 2R_22414371_SNP [dm6]	T	G	1.542e^-4	0.414	INTRON qkr58E-1	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
2R	5192535	2R_5192535_SNP [dm3] 2R_9305030_SNP [dm6]	A	C	1.542e^-4	0.414	SYNONYMOUS_CODING Myd88	TF binding site mE1_TFBS_cad
2R	5193365	2R_5193365_SNP [dm3] 2R_9305860_SNP [dm6]	A	G	1.542e^-4	0.414	INTRON Myd88	TF binding site mE1_TFBS_cad
2R	6529953	2R_6529953_SNP [dm3] 2R_10642448_SNP [dm6]	G	T	1.542e^-4	0.414	SYNONYMOUS_CODING Git DOWNSTREAM CG11883	TF binding site mE1_TFBS_HSA
3L	14337171	3L_14337171_SNP [dm3] 3L_14344071_SNP [dm6]	A	T	1.542e^-4	0.414	INTRON fz
3L	16741409	3L_16741409_SNP [dm3] 3L_16748309_SNP [dm6]	C	G	1.542e^-4	0.414	INTERGENIC
3L	20136218	3L_20136218_SNP [dm3] 3L_20143118_SNP [dm6]	G	A	1.542e^-4	0.414	INTERGENIC
3L	20136233	3L_20136233_DEL [dm3] 3L_20143133_DEL [dm6]	TGACCTTATTACTACGGAAT...	T	1.542e^-4	0.414	INTERGENIC
3L	20136274	3L_20136274_SNP [dm3] 3L_20143174_SNP [dm6]	A	G	1.542e^-4	0.414	INTERGENIC
3R	6364306	3R_6364306_SNP [dm3] 3R_10538584_SNP [dm6]	G	T	1.542e^-4	0.414	INTRON hth
X	17481576	X_17481576_SNP [dm3] X_17587543_SNP [dm6]	G	A	1.542e^-4	0.414	INTRON CG12991
X	6088579	X_6088579_DEL [dm3] X_6194546_DEL [dm6]	GG	G	1.542e^-4	0.414	DOWNSTREAM CG32750 INTERGENIC
3L	7985038	3L_7985038_SNP [dm3] 3L_7991938_SNP [dm6]	C	T	1.557e^-4	0.414	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	15713823	3L_15713823_SNP [dm3] 3L_15720723_SNP [dm6]	A	T	1.559e^-4	0.414	DOWNSTREAM CG42570 & 1 other INTERGENIC
X	13431278	X_13431278_SNP [dm3] X_13537245_SNP [dm6]	A	G	1.561e^-4	0.414	INTERGENIC
2L	17541798	2L_17541798_SNP [dm3] 2L_17541798_SNP [dm6]	C	A	1.603e^-4	0.414	UPSTREAM CR43304 INTERGENIC
2L	9174704	2L_9174704_SNP [dm3] 2L_9174704_SNP [dm6]	A	C	1.607e^-4	0.414	INTRON tai
2R	19617710	2R_19617710_SNP [dm3] 2R_23730187_SNP [dm6]	C	T	1.607e^-4	0.414	INTRON Sesn
2R	20339282	2R_20339282_SNP [dm3] 2R_24451759_SNP [dm6]	A	C	1.607e^-4	0.414	SYNONYMOUS_CODING CG4563	TF binding site mE1_TFBS_chinmo
3R	14647605	3R_14647605_SNP [dm3] 3R_18821883_SNP [dm6]	G	C	1.607e^-4	0.414	INTRON CG18208
3R	17777532	3R_17777532_DEL [dm3] 3R_21951810_DEL [dm6]	TTTAT	T	1.607e^-4	0.414	INTRON Eip93F	TF binding site mE1_TFBS_cad
3R	25299388	3R_25299388_SNP [dm3] 3R_29473666_SNP [dm6]	C	G	1.607e^-4	0.414	INTRON Ptp99A
3R	25299404	3R_25299404_SNP [dm3] 3R_29473682_SNP [dm6]	T	G	1.607e^-4	0.414	INTRON Ptp99A
3R	26037728	3R_26037728_SNP [dm3] 3R_30212006_SNP [dm6]	T	C	1.607e^-4	0.414	UPSTREAM CecA2 & 1 other DOWNSTREAM CecA1 & 1 other INTERGENIC
3R	9738602	3R_9738602_SNP [dm3] 3R_13912880_SNP [dm6]	G	A	1.607e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_inv
3R	9738633	3R_9738633_SNP [dm3] 3R_13912911_SNP [dm6]	G	T	1.607e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_inv
3R	9738828	3R_9738828_SNP [dm3] 3R_13913106_SNP [dm6]	A	G	1.607e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_inv
X	15173910	X_15173910_SNP [dm3] X_15279877_SNP [dm6]	G	T	1.607e^-4	0.414	INTERGENIC
3L	4327213	3L_4327213_SNP [dm3] 3L_4327213_SNP [dm6]	A	C	1.622e^-4	0.414	INTRON Cip4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3221047	2L_3221047_SNP [dm3] 2L_3221047_SNP [dm6]	C	T	1.630e^-4	0.414	INTERGENIC
2R	17670767	2R_17670767_SNP [dm3] 2R_21783262_SNP [dm6]	G	A	1.630e^-4	0.414	INTERGENIC
3R	22284409	3R_22284409_SNP [dm3] 3R_26458687_SNP [dm6]	A	G	1.647e^-4	0.414	INTRON CG14238
3R	7745264	3R_7745264_SNP [dm3] 3R_11919542_SNP [dm6]	A	G	1.647e^-4	0.414	INTRON Cad87A
2L	5995825	2L_5995825_SNP [dm3] 2L_5995825_SNP [dm6]	G	C	1.654e^-4	0.414	SYNONYMOUS_CODING lid	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15739434	3L_15739434_SNP [dm3] 3L_15746334_SNP [dm6]	C	A	1.654e^-4	0.414	INTERGENIC
X	16427002	X_16427002_SNP [dm3] X_16532969_SNP [dm6]	T	G	1.654e^-4	0.414	INTRON para
2L	17642467	2L_17642467_SNP [dm3] 2L_17642467_SNP [dm6]	T	C	1.655e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3196636	2L_3196636_SNP [dm3] 2L_3196636_SNP [dm6]	A	G	1.657e^-4	0.414	INTRON CG34393
2L	3196638	2L_3196638_SNP [dm3] 2L_3196638_SNP [dm6]	T	C	1.657e^-4	0.414	INTRON CG34393
3L	11233344	3L_11233344_SNP [dm3] 3L_11240244_SNP [dm6]	A	T	1.676e^-4	0.414	INTERGENIC
2R	7540732	2R_7540732_SNP [dm3] 2R_11653227_SNP [dm6]	C	T	1.694e^-4	0.414	UPSTREAM tRNA:CR30254 DOWNSTREAM CG34228 & 1 other INTRON Roc2
3R	17772569	3R_17772569_SNP [dm3] 3R_21946847_SNP [dm6]	T	G	1.694e^-4	0.414	INTERGENIC
3R	17778902	3R_17778902_INS [dm3] 3R_21953180_INS [dm6]	A	ACAAA	1.694e^-4	0.414	INTRON Eip93F
2R	11772539	2R_11772539_DEL [dm3] 2R_15885034_DEL [dm6]	TTTAGCTT	T	1.699e^-4	0.414	INTRON sli
2R	6598850	2R_6598850_SNP [dm3] 2R_10711345_SNP [dm6]	A	C	1.699e^-4	0.414	SYNONYMOUS_CODING stan
2L	20879183	2L_20879183_SNP [dm3] 2L_20879183_SNP [dm6]	A	G	1.719e^-4	0.414	INTRON sky & 1 other
X	9471434	X_9471434_SNP [dm3] X_9577401_SNP [dm6]	A	G	1.719e^-4	0.414	INTRON CG32699
2R	16648691	2R_16648691_SNP [dm3] 2R_20761186_SNP [dm6]	A	T	1.733e^-4	0.414	INTERGENIC
2R	4818520	2R_4818520_SNP [dm3] 2R_8931015_SNP [dm6]	T	C	1.733e^-4	0.414	INTRON PAN2	TF binding site mE1_TFBS_sens
3R	24823343	3R_24823343_INS [dm3] 3R_28997621_INS [dm6]	G	GGT	1.746e^-4	0.414	INTRON wat
2L	10871841	2L_10871841_SNP [dm3] 2L_10871841_SNP [dm6]	C	T	1.756e^-4	0.414	UPSTREAM CR45454 DOWNSTREAM CR45453 INTERGENIC
2L	5930805	2L_5930805_SNP [dm3] 2L_5930805_SNP [dm6]	T	C	1.756e^-4	0.414	INTRON dsf
2R	7962348	2R_7962348_SNP [dm3] 2R_12074843_SNP [dm6]	G	C	1.762e^-4	0.414	INTRON CG8888
3L	10524830	3L_10524830_SNP [dm3] 3L_10531730_SNP [dm6]	A	T	1.762e^-4	0.414	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl
X	15145539	X_15145539_SNP [dm3] X_15251506_SNP [dm6]	T	C	1.762e^-4	0.414	INTERGENIC
2L	12391200	2L_12391200_SNP [dm3] 2L_12391200_SNP [dm6]	T	A	1.763e^-4	0.414	INTRON bru-2
2L	12391202	2L_12391202_SNP [dm3] 2L_12391202_SNP [dm6]	A	C	1.763e^-4	0.414	INTRON bru-2
2R	9454749	2R_9454749_SNP [dm3] 2R_13567244_SNP [dm6]	G	T	1.766e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	9454823	2R_9454823_SNP [dm3] 2R_13567318_SNP [dm6]	C	G	1.766e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	9454838	2R_9454838_SNP [dm3] 2R_13567333_SNP [dm6]	G	A	1.766e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3L	1309397	3L_1309397_SNP [dm3] 3L_1309397_SNP [dm6]	G	T	1.766e^-4	0.414	SYNONYMOUS_CODING CG2469	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12628506	2L_12628506_SNP [dm3] 2L_12628506_SNP [dm6]	A	T	1.769e^-4	0.414	DOWNSTREAM nub INTRON Ref2
2L	1496457	2L_1496457_SNP [dm3] 2L_1496457_SNP [dm6]	C	A	1.769e^-4	0.414	SYNONYMOUS_CODING CG31926 UPSTREAM CG31661	TF binding site mE1_TFBS_sens
2L	3801165	2L_3801165_DEL [dm3] 2L_3801165_DEL [dm6]	TT	T	1.769e^-4	0.414	INTRON CG3921
2L	3801172	2L_3801172_SNP [dm3] 2L_3801172_SNP [dm6]	A	T	1.769e^-4	0.414	INTRON CG3921
2L	6235623	2L_6235623_SNP [dm3] 2L_6235623_SNP [dm6]	C	T	1.769e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	6235859	2L_6235859_SNP [dm3] 2L_6235859_SNP [dm6]	T	A	1.769e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
2L	6254219	2L_6254219_SNP [dm3] 2L_6254219_SNP [dm6]	C	T	1.769e^-4	0.414	INTRON Ddr
2R	16916655	2R_16916655_SNP [dm3] 2R_21029150_SNP [dm6]	A	G	1.769e^-4	0.414	DOWNSTREAM CR45148 INTERGENIC
2R	5588234	2R_5588234_SNP [dm3] 2R_9700729_SNP [dm6]	T	A	1.769e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5589610	2R_5589610_SNP [dm3] 2R_9702105_SNP [dm6]	C	A	1.769e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5589614	2R_5589614_SNP [dm3] 2R_9702109_SNP [dm6]	T	G	1.769e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4148152	X_4148152_SNP [dm3] X_4254119_SNP [dm6]	A	T	1.769e^-4	0.414	INTERGENIC
X	4148194	X_4148194_SNP [dm3] X_4254161_SNP [dm6]	T	A	1.769e^-4	0.414	INTERGENIC
3R	16822710	3R_16822710_SNP [dm3] 3R_20996988_SNP [dm6]	C	T	1.800e^-4	0.414	INTRON Calx
3R	25522759	3R_25522759_SNP [dm3] 3R_29697037_SNP [dm6]	A	T	1.800e^-4	0.414	DOWNSTREAM dmrt99B INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25522766	3R_25522766_INS [dm3] 3R_29697044_INS [dm6]	T	TTC	1.800e^-4	0.414	DOWNSTREAM dmrt99B INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25522771	3R_25522771_SNP [dm3] 3R_29697049_SNP [dm6]	G	T	1.800e^-4	0.414	DOWNSTREAM dmrt99B INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25199915	3R_25199915_SNP [dm3] 3R_29374193_SNP [dm6]	A	G	1.817e^-4	0.414	INTERGENIC
2L	10499614	2L_10499614_SNP [dm3] 2L_10499614_SNP [dm6]	T	A	1.819e^-4	0.414	INTRON Myo31DF
2L	15026125	2L_15026125_SNP [dm3] 2L_15026125_SNP [dm6]	T	A	1.819e^-4	0.414	UPSTREAM CG33310 INTRON GABA-B-R1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4238334	2L_4238334_SNP [dm3] 2L_4238334_SNP [dm6]	G	T	1.819e^-4	0.414	INTERGENIC
2R	5945030	2R_5945030_SNP [dm3] 2R_10057525_SNP [dm6]	G	A	1.819e^-4	0.414	INTRON magu	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3R	10183698	3R_10183698_SNP [dm3] 3R_14357976_SNP [dm6]	C	T	1.819e^-4	0.414	DOWNSTREAM CG31320 INTRON NK7.1
3R	19050468	3R_19050468_SNP [dm3] 3R_23224746_SNP [dm6]	G	T	1.819e^-4	0.414	INTRON cnc
2R	11889050	2R_11889050_SNP [dm3] 2R_16001545_SNP [dm6]	A	T	1.825e^-4	0.414	UTR_5_PRIME CG8370 UPSTREAM CG8370 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3221059	2L_3221059_SNP [dm3] 2L_3221059_SNP [dm6]	A	G	1.847e^-4	0.414	INTERGENIC
2R	15326881	2R_15326881_SNP [dm3] 2R_19439376_SNP [dm6]	G	T	1.855e^-4	0.414	SPLICE_SITE_REGION Spt5 INTRON Spt5
3R	25522757	3R_25522757_SNP [dm3] 3R_29697035_SNP [dm6]	C	T	1.855e^-4	0.414	DOWNSTREAM dmrt99B INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25522760	3R_25522760_SNP [dm3] 3R_29697038_SNP [dm6]	T	C	1.855e^-4	0.414	DOWNSTREAM dmrt99B INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19357777	X_19357777_SNP [dm3] X_19463744_SNP [dm6]	G	A	1.855e^-4	0.414	INTRON kek5
2L	13448300	2L_13448300_SNP [dm3] 2L_13448300_SNP [dm6]	C	T	1.868e^-4	0.414	SYNONYMOUS_CODING Hsp60D INTRON CG42784
2L	13457594	2L_13457594_SNP [dm3] 2L_13457594_SNP [dm6]	A	T	1.868e^-4	0.414	UTR_5_PRIME CG42809 DOWNSTREAM CR45684 INTRON CG42784	TF binding site BDTNP1_TFBS_dl
2L	16458341	2L_16458341_SNP [dm3] 2L_16458341_SNP [dm6]	G	T	1.875e^-4	0.414	INTERGENIC	regulatory region REDfly_CRMs
2L	5018325	2L_5018325_INS [dm3] 2L_5018325_INS [dm6]	A	AA	1.881e^-4	0.414	INTRON vkg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16555559	2L_16555559_SNP [dm3] 2L_16555559_SNP [dm6]	A	T	1.907e^-4	0.414	INTRON CG42389
2R	5263774	2R_5263774_SNP [dm3] 2R_9376269_SNP [dm6]	C	T	1.907e^-4	0.414	INTRON CG13954	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16278412	3L_16278412_SNP [dm3] 3L_16285312_SNP [dm6]	G	T	1.907e^-4	0.414	INTRON CG13047	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10684223	3L_10684223_DEL [dm3] 3L_10691123_DEL [dm6]	TT	T	1.914e^-4	0.414	UTR_5_PRIME CG11811 DOWNSTREAM simj	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3L	9502793	3L_9502793_SNP [dm3] 3L_9509693_SNP [dm6]	C	T	1.914e^-4	0.414	UPSTREAM CG3408 DOWNSTREAM RpS9 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9502940	3L_9502940_SNP [dm3] 3L_9509840_SNP [dm6]	G	T	1.914e^-4	0.414	UTR_3_PRIME RpS9 UPSTREAM CG3408 DOWNSTREAM RpS9 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	9503045	3L_9503045_DEL [dm3] 3L_9509945_DEL [dm6]	CATGTATT	C	1.914e^-4	0.414	UTR_3_PRIME RpS9 UPSTREAM CG3408 DOWNSTREAM snoRNA:Me28S-G3253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	19048592	3R_19048592_INS [dm3] 3R_23222870_INS [dm6]	G	GGCGGGGTTTCCAGAGAGG...	1.953e^-4	0.414	CODON_INSERTION cnc UPSTREAM cnc
3L	10734815	3L_10734815_SNP [dm3] 3L_10741715_SNP [dm6]	G	A	1.957e^-4	0.414	INTERGENIC
2L	10540865	2L_10540865_SNP [dm3] 2L_10540865_SNP [dm6]	G	T	1.982e^-4	0.414	INTERGENIC
2L	1108445	2L_1108445_SNP [dm3] 2L_1108445_SNP [dm6]	A	C	1.982e^-4	0.414	UPSTREAM CG14339 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
2L	1108571	2L_1108571_SNP [dm3] 2L_1108571_SNP [dm6]	T	G	1.982e^-4	0.414	START_GAINED CG14339 UTR_5_PRIME CG14339 UPSTREAM mtRNApol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
2L	1112473	2L_1112473_SNP [dm3] 2L_1112473_SNP [dm6]	T	A	1.982e^-4	0.414	UPSTREAM CG14340 INTRON CG14339
2L	1112503	2L_1112503_SNP [dm3] 2L_1112503_SNP [dm6]	C	T	1.982e^-4	0.414	UPSTREAM CG14340 INTRON CG14339
2L	17653568	2L_17653568_SNP [dm3] 2L_17653568_SNP [dm6]	G	A	1.982e^-4	0.414	INTRON CadN
2L	17653876	2L_17653876_SNP [dm3] 2L_17653876_SNP [dm6]	A	T	1.982e^-4	0.414	INTRON CadN
2L	17653883	2L_17653883_SNP [dm3] 2L_17653883_SNP [dm6]	T	A	1.982e^-4	0.414	INTRON CadN
2L	17653892	2L_17653892_SNP [dm3] 2L_17653892_SNP [dm6]	A	T	1.982e^-4	0.414	INTRON CadN
2L	17653979	2L_17653979_SNP [dm3] 2L_17653979_SNP [dm6]	C	T	1.982e^-4	0.414	INTRON CadN
2L	17654067	2L_17654067_SNP [dm3] 2L_17654067_SNP [dm6]	C	T	1.982e^-4	0.414	INTRON CadN
2L	17654234	2L_17654234_SNP [dm3] 2L_17654234_SNP [dm6]	A	T	1.982e^-4	0.414	INTRON CadN
2L	2688624	2L_2688624_SNP [dm3] 2L_2688624_SNP [dm6]	A	C	1.982e^-4	0.414	INTRON CG31690
3L	3190743	3L_3190743_SNP [dm3] 3L_3190743_SNP [dm6]	A	G	2.007e^-4	0.414	UTR_3_PRIME CG14965 UPSTREAM CG42525 DOWNSTREAM CG14958
3L	6160608	3L_6160608_SNP [dm3] 3L_6167508_SNP [dm6]	C	G	2.007e^-4	0.414	UTR_3_PRIME CG10289
3L	9874786	3L_9874786_SNP [dm3] 3L_9881686_SNP [dm6]	T	C	2.013e^-4	0.414	INTRON CG34382
2L	10016477	2L_10016477_SNP [dm3] 2L_10016477_SNP [dm6]	C	T	2.015e^-4	0.414	SYNONYMOUS_CODING CG13131	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10197287	2L_10197287_SNP [dm3] 2L_10197287_SNP [dm6]	A	G	2.015e^-4	0.414	INTRON Sur
2L	10244856	2L_10244856_SNP [dm3] 2L_10244856_SNP [dm6]	G	A	2.015e^-4	0.414	SPLICE_SITE_REGION chico INTRON CR44995 & 1 other
2L	1033544	2L_1033544_SNP [dm3] 2L_1033544_SNP [dm6]	G	A	2.015e^-4	0.414	INTRON IA-2
2L	1033550	2L_1033550_SNP [dm3] 2L_1033550_SNP [dm6]	G	A	2.015e^-4	0.414	INTRON IA-2
2L	1033575	2L_1033575_SNP [dm3] 2L_1033575_SNP [dm6]	A	G	2.015e^-4	0.414	INTRON IA-2
2L	1033576	2L_1033576_SNP [dm3] 2L_1033576_SNP [dm6]	A	T	2.015e^-4	0.414	INTRON IA-2
2L	1033598	2L_1033598_SNP [dm3] 2L_1033598_SNP [dm6]	C	T	2.015e^-4	0.414	INTRON IA-2
2L	1033599	2L_1033599_SNP [dm3] 2L_1033599_SNP [dm6]	G	A	2.015e^-4	0.414	INTRON IA-2
2L	1103799	2L_1103799_SNP [dm3] 2L_1103799_SNP [dm6]	G	A	2.015e^-4	0.414	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11166465	2L_11166465_SNP [dm3] 2L_11166465_SNP [dm6]	C	A	2.015e^-4	0.414	INTRON Ca-beta
2L	11166468	2L_11166468_SNP [dm3] 2L_11166468_SNP [dm6]	A	T	2.015e^-4	0.414	INTRON Ca-beta
2L	11166475	2L_11166475_SNP [dm3] 2L_11166475_SNP [dm6]	T	C	2.015e^-4	0.414	INTRON Ca-beta
2L	11166569	2L_11166569_SNP [dm3] 2L_11166569_SNP [dm6]	T	G	2.015e^-4	0.414	INTRON Ca-beta
2L	14642520	2L_14642520_SNP [dm3] 2L_14642520_SNP [dm6]	C	A	2.015e^-4	0.414	INTRON osp
2L	14642521	2L_14642521_SNP [dm3] 2L_14642521_SNP [dm6]	A	C	2.015e^-4	0.414	INTRON osp
2L	2681950	2L_2681950_SNP [dm3] 2L_2681950_SNP [dm6]	C	A	2.015e^-4	0.414	INTRON CG31690
2L	8207340	2L_8207340_SNP [dm3] 2L_8207340_SNP [dm6]	G	A	2.015e^-4	0.414	SYNONYMOUS_CODING CG8419	TF binding site mE1_TFBS_sens
2L	8207388	2L_8207388_SNP [dm3] 2L_8207388_SNP [dm6]	T	A	2.015e^-4	0.414	SYNONYMOUS_CODING CG8419	TF binding site mE1_TFBS_sens
2L	8207489	2L_8207489_SNP [dm3] 2L_8207489_SNP [dm6]	A	T	2.015e^-4	0.414	INTRON CG8419
2L	8207494	2L_8207494_SNP [dm3] 2L_8207494_SNP [dm6]	T	C	2.015e^-4	0.414	INTRON CG8419
2L	8207498	2L_8207498_SNP [dm3] 2L_8207498_SNP [dm6]	G	A	2.015e^-4	0.414	INTRON CG8419
2L	8207508	2L_8207508_SNP [dm3] 2L_8207508_SNP [dm6]	A	C	2.015e^-4	0.414	INTRON CG8419
3R	11153373	3R_11153373_SNP [dm3] 3R_15327651_SNP [dm6]	G	C	2.017e^-4	0.414	SYNONYMOUS_CODING CG6236
3R	19797949	3R_19797949_SNP [dm3] 3R_23972227_SNP [dm6]	C	T	2.021e^-4	0.414	INTRON CG31140
3R	26136309	3R_26136309_SNP [dm3] 3R_30310587_SNP [dm6]	G	A	2.021e^-4	0.414	INTRON hdc
3L	10524754	3L_10524754_SNP [dm3] 3L_10531654_SNP [dm6]	G	T	2.026e^-4	0.414	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl
3L	10524777	3L_10524777_SNP [dm3] 3L_10531677_SNP [dm6]	A	T	2.026e^-4	0.414	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl
3L	8551460	3L_8551460_SNP [dm3] 3L_8558360_SNP [dm6]	C	T	2.026e^-4	0.414	UTR_5_PRIME rhea INTRON rhea
3R	15016748	3R_15016748_SNP [dm3] 3R_19191026_SNP [dm6]	T	C	2.029e^-4	0.414	INTRON CG31475
3R	15016764	3R_15016764_SNP [dm3] 3R_19191042_SNP [dm6]	G	A	2.029e^-4	0.414	INTRON CG31475
3R	18118735	3R_18118735_SNP [dm3] 3R_22293013_SNP [dm6]	C	T	2.029e^-4	0.414	SYNONYMOUS_CODING SKIP DOWNSTREAM mir-1010
3R	19612069	3R_19612069_SNP [dm3] 3R_23786347_SNP [dm6]	A	G	2.029e^-4	0.414	INTRON mbc
2L	15625758	2L_15625758_SNP [dm3] 2L_15625758_SNP [dm6]	G	A	2.031e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11233340	3L_11233340_SNP [dm3] 3L_11240240_SNP [dm6]	T	C	2.033e^-4	0.414	INTERGENIC
3L	8823187	3L_8823187_INS [dm3] 3L_8830087_INS [dm6]	C	CC	2.033e^-4	0.414	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11284929	3R_11284929_SNP [dm3] 3R_15459207_SNP [dm6]	C	A	2.050e^-4	0.414	INTRON AdamTS-A
3R	2605174	3R_2605174_SNP [dm3] 3R_6779452_SNP [dm6]	G	C	2.050e^-4	0.414	UPSTREAM CR43435 EXON CR42721
3R	16891305	3R_16891305_SNP [dm3] 3R_21065583_SNP [dm6]	C	T	2.082e^-4	0.414	UPSTREAM AnxB9 INTRON AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	750810	2L_750810_DEL [dm3] 2L_750810_DEL [dm6]	GTG	G	2.159e^-4	0.414	INTRON GABA-B-R3	TF binding site mE1_TFBS_sbb
2R	4459026	2R_4459026_SNP [dm3] 2R_8571521_SNP [dm6]	C	G	2.166e^-4	0.414	NON_SYNONYMOUS_CODING Cyp6a13
2L	1126836	2L_1126836_SNP [dm3] 2L_1126836_SNP [dm6]	C	T	2.167e^-4	0.414	INTRON Pino
2L	1126851	2L_1126851_SNP [dm3] 2L_1126851_SNP [dm6]	A	G	2.167e^-4	0.414	INTRON Pino
2L	1130602	2L_1130602_SNP [dm3] 2L_1130602_SNP [dm6]	G	A	2.167e^-4	0.414	SYNONYMOUS_CODING CG4552	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9344621	2L_9344621_SNP [dm3] 2L_9344621_SNP [dm6]	G	A	2.167e^-4	0.414	UTR_3_PRIME CG3748 DOWNSTREAM CG3748
2L	9344639	2L_9344639_SNP [dm3] 2L_9344639_SNP [dm6]	A	C	2.167e^-4	0.414	UTR_3_PRIME CG3748 DOWNSTREAM CG3748
2L	9344774	2L_9344774_SNP [dm3] 2L_9344774_SNP [dm6]	T	A	2.167e^-4	0.414	UTR_3_PRIME CG3748 DOWNSTREAM CG3748
2L	9344787	2L_9344787_SNP [dm3] 2L_9344787_SNP [dm6]	T	C	2.167e^-4	0.414	DOWNSTREAM CG3748 INTERGENIC
2L	9344821	2L_9344821_SNP [dm3] 2L_9344821_SNP [dm6]	T	A	2.167e^-4	0.414	DOWNSTREAM CG3748 INTERGENIC
2R	10173387	2R_10173387_SNP [dm3] 2R_14285882_SNP [dm6]	A	C	2.167e^-4	0.414	SYNONYMOUS_CODING Ih UTR_5_PRIME Ih	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16688654	2R_16688654_SNP [dm3] 2R_20801149_SNP [dm6]	T	C	2.167e^-4	0.414	INTERGENIC
2R	19610487	2R_19610487_SNP [dm3] 2R_23722964_SNP [dm6]	C	T	2.167e^-4	0.414	INTRON Sesn
2R	20337412	2R_20337412_SNP [dm3] 2R_24449889_SNP [dm6]	C	T	2.167e^-4	0.414	INTERGENIC
2R	7540628	2R_7540628_SNP [dm3] 2R_11653123_SNP [dm6]	G	A	2.167e^-4	0.414	UPSTREAM tRNA:CR30254 DOWNSTREAM CG34228 & 1 other INTRON Roc2	TF binding site mE1_TFBS_cad
2R	7540644	2R_7540644_SNP [dm3] 2R_11653139_SNP [dm6]	A	G	2.167e^-4	0.414	UPSTREAM tRNA:CR30254 DOWNSTREAM CG34228 & 1 other INTRON Roc2	TF binding site mE1_TFBS_cad
2R	8722699	2R_8722699_DEL [dm3] 2R_12835194_DEL [dm6]	AA	A	2.167e^-4	0.414	INTERGENIC
2R	8722714	2R_8722714_SNP [dm3] 2R_12835209_SNP [dm6]	G	T	2.167e^-4	0.414	INTERGENIC
3L	15712821	3L_15712821_SNP [dm3] 3L_15719721_SNP [dm6]	C	T	2.167e^-4	0.414	SYNONYMOUS_CODING CG42570
3L	15713842	3L_15713842_SNP [dm3] 3L_15720742_SNP [dm6]	A	T	2.167e^-4	0.414	DOWNSTREAM CG42570 & 1 other INTERGENIC
3L	15713845	3L_15713845_INS [dm3] 3L_15720745_INS [dm6]	T	TTTCTACA	2.167e^-4	0.414	DOWNSTREAM CG42570 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	15713849	3L_15713849_SNP [dm3] 3L_15720749_SNP [dm6]	C	T	2.167e^-4	0.414	DOWNSTREAM CG42570 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	15713851	3L_15713851_INS [dm3] 3L_15720751_INS [dm6]	T	TATA	2.167e^-4	0.414	DOWNSTREAM CG42570 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	5480703	3L_5480703_SNP [dm3] 3L_5487603_SNP [dm6]	C	T	2.167e^-4	0.414	INTERGENIC
3L	7050185	3L_7050185_SNP [dm3] 3L_7057085_SNP [dm6]	T	C	2.167e^-4	0.414	INTERGENIC
X	12444201	X_12444201_SNP [dm3] X_12550168_SNP [dm6]	G	T	2.167e^-4	0.414	INTRON CG43921
X	12444202	X_12444202_SNP [dm3] X_12550169_SNP [dm6]	T	A	2.167e^-4	0.414	INTRON CG43921
X	1603757	X_1603757_SNP [dm3] X_1709724_SNP [dm6]	C	T	2.167e^-4	0.414	SYNONYMOUS_CODING CG3795	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5477873	X_5477873_SNP [dm3] X_5583840_SNP [dm6]	A	C	2.167e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_Kr
X	5820119	X_5820119_SNP [dm3] X_5926086_SNP [dm6]	G	A	2.167e^-4	0.414	INTRON CG3726
3L	5078051	3L_5078051_SNP [dm3] 3L_5078051_SNP [dm6]	A	T	2.171e^-4	0.414	INTRON Con
3R	20667514	3R_20667514_SNP [dm3] 3R_24841792_SNP [dm6]	G	A	2.176e^-4	0.414	UPSTREAM Esp & 1 other INTERGENIC
3L	2079154	3L_2079154_SNP [dm3] 3L_2079154_SNP [dm6]	T	G	2.188e^-4	0.414	INTRON sls
3L	5347212	3L_5347212_SNP [dm3] 3L_5354112_SNP [dm6]	A	G	2.208e^-4	0.414	INTRON lama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	15285842	X_15285842_SNP [dm3] X_15391809_SNP [dm6]	T	C	2.208e^-4	0.414	INTRON Cngl
3L	15700768	3L_15700768_SNP [dm3] 3L_15707668_SNP [dm6]	T	G	2.215e^-4	0.414	INTERGENIC
3L	15701161	3L_15701161_SNP [dm3] 3L_15708061_SNP [dm6]	A	G	2.215e^-4	0.414	INTERGENIC
2R	14781089	2R_14781089_SNP [dm3] 2R_18893584_SNP [dm6]	A	T	2.219e^-4	0.414	INTRON sano
3R	16628115	3R_16628115_SNP [dm3] 3R_20802393_SNP [dm6]	G	C	2.240e^-4	0.414	NON_SYNONYMOUS_CODING Syp SYNONYMOUS_CODING Syp INTRON Syp
2L	2005270	2L_2005270_SNP [dm3] 2L_2005270_SNP [dm6]	A	G	2.241e^-4	0.414	INTRON CG33543
3R	17083797	3R_17083797_SNP [dm3] 3R_21258075_SNP [dm6]	T	A	2.244e^-4	0.414	INTRON ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24725603	3R_24725603_SNP [dm3] 3R_28899881_SNP [dm6]	C	T	2.244e^-4	0.414	INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	26909803	3R_26909803_SNP [dm3] 3R_31084081_SNP [dm6]	A	C	2.244e^-4	0.414	DOWNSTREAM Sox100B INTERGENIC
3R	27135862	3R_27135862_SNP [dm3] 3R_31310140_SNP [dm6]	A	T	2.244e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	27135910	3R_27135910_SNP [dm3] 3R_31310188_SNP [dm6]	T	C	2.244e^-4	0.414	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7551996	3R_7551996_SNP [dm3] 3R_11726274_SNP [dm6]	C	A	2.244e^-4	0.414	INTRON CG12594
3R	10112636	3R_10112636_SNP [dm3] 3R_14286914_SNP [dm6]	A	C	2.246e^-4	0.414	UPSTREAM trx INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10112678	3R_10112678_SNP [dm3] 3R_14286956_SNP [dm6]	C	T	2.246e^-4	0.414	UPSTREAM trx INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16551656	3R_16551656_SNP [dm3] 3R_20725934_SNP [dm6]	T	A	2.246e^-4	0.414	INTERGENIC
3R	24666916	3R_24666916_SNP [dm3] 3R_28841194_SNP [dm6]	T	C	2.246e^-4	0.414	INTRON Apc
3R	6368652	3R_6368652_DEL [dm3] 3R_10542930_DEL [dm6]	AA	A	2.246e^-4	0.414	INTRON hth
X	9024221	X_9024221_DEL [dm3] X_9130188_DEL [dm6]	CGCACCACCCATC...	C	2.246e^-4	0.414	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16648672	2R_16648672_SNP [dm3] 2R_20761167_SNP [dm6]	G	A	2.249e^-4	0.414	INTERGENIC
2R	16648681	2R_16648681_SNP [dm3] 2R_20761176_SNP [dm6]	G	A	2.249e^-4	0.414	INTERGENIC
3R	6303025	3R_6303025_SNP [dm3] 3R_10477303_SNP [dm6]	G	A	2.281e^-4	0.414	INTERGENIC
2L	4179911	2L_4179911_SNP [dm3] 2L_4179911_SNP [dm6]	T	C	2.283e^-4	0.414	INTERGENIC
2L	1964900	2L_1964900_SNP [dm3] 2L_1964900_SNP [dm6]	G	A	2.293e^-4	0.414	UPSTREAM tRNA:CR31942 INTRON erm	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6235808	2L_6235808_DEL [dm3] 2L_6235808_DEL [dm6]	AACTGAAAAA	G	2.293e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
2L	9554314	2L_9554314_SNP [dm3] 2L_9554314_SNP [dm6]	G	C	2.293e^-4	0.414	INTRON jp	TF binding site mE1_TFBS_cad
2R	4928780	2R_4928780_SNP [dm3] 2R_9041275_SNP [dm6]	C	A	2.293e^-4	0.414	SYNONYMOUS_CODING Ance-4 DOWNSTREAM PPO2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15691079	3L_15691079_SNP [dm3] 3L_15697979_SNP [dm6]	C	T	2.293e^-4	0.414	SYNONYMOUS_CODING comm2
3L	15897786	3L_15897786_SNP [dm3] 3L_15904686_SNP [dm6]	C	T	2.293e^-4	0.414	INTRON sff
X	15181104	X_15181104_SNP [dm3] X_15287071_SNP [dm6]	C	T	2.293e^-4	0.414	INTERGENIC
2L	17708428	2L_17708428_DEL [dm3] 2L_17708428_DEL [dm6]	CCGTTTTGGGG...	AAAAA	2.314e^-4	0.414	INTRON CadN
3R	26030032	3R_26030032_SNP [dm3] 3R_30204310_SNP [dm6]	C	T	2.315e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	15731993	2R_15731993_SNP [dm3] 2R_19844488_SNP [dm6]	A	G	2.360e^-4	0.414	UPSTREAM CG44569 INTERGENIC
2R	8722763	2R_8722763_SNP [dm3] 2R_12835258_SNP [dm6]	G	A	2.360e^-4	0.414	INTERGENIC
2R	10173321	2R_10173321_SNP [dm3] 2R_14285816_SNP [dm6]	G	A	2.377e^-4	0.414	SYNONYMOUS_CODING Ih UTR_5_PRIME Ih	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11415994	2L_11415994_SNP [dm3] 2L_11415994_SNP [dm6]	A	G	2.417e^-4	0.414	INTERGENIC
3R	6303006	3R_6303006_SNP [dm3] 3R_10477284_SNP [dm6]	G	C	2.449e^-4	0.414	INTERGENIC
X	14286182	X_14286182_SNP [dm3] X_14392149_SNP [dm6]	A	T	2.449e^-4	0.414	INTRON dpr8
X	14286283	X_14286283_SNP [dm3] X_14392250_SNP [dm6]	G	A	2.449e^-4	0.414	INTRON dpr8
2L	4659749	2L_4659749_SNP [dm3] 2L_4659749_SNP [dm6]	A	C	2.450e^-4	0.414	INTERGENIC
2R	16060948	2R_16060948_SNP [dm3] 2R_20173443_SNP [dm6]	T	C	2.450e^-4	0.414	INTERGENIC
2R	16235680	2R_16235680_SNP [dm3] 2R_20348175_SNP [dm6]	A	T	2.450e^-4	0.414	DOWNSTREAM CG16741 INTERGENIC
2R	17804709	2R_17804709_SNP [dm3] 2R_21917204_SNP [dm6]	C	A	2.450e^-4	0.414	INTRON Fili
2R	17920895	2R_17920895_SNP [dm3] 2R_22033390_SNP [dm6]	A	G	2.450e^-4	0.414	INTRON CG34370
2R	18188528	2R_18188528_SNP [dm3] 2R_22301023_SNP [dm6]	G	A	2.450e^-4	0.414	INTRON wdp	TF binding site mE1_TFBS_cad
2R	18188535	2R_18188535_SNP [dm3] 2R_22301030_SNP [dm6]	G	T	2.450e^-4	0.414	INTRON wdp	TF binding site mE1_TFBS_cad
2R	18188621	2R_18188621_SNP [dm3] 2R_22301116_SNP [dm6]	G	T	2.450e^-4	0.414	INTRON wdp	TF binding site mE1_TFBS_cad
2R	18188622	2R_18188622_SNP [dm3] 2R_22301117_SNP [dm6]	C	A	2.450e^-4	0.414	INTRON wdp	TF binding site mE1_TFBS_cad
2R	18188629	2R_18188629_SNP [dm3] 2R_22301124_SNP [dm6]	G	A	2.450e^-4	0.414	INTRON wdp	TF binding site mE1_TFBS_cad
2R	18577886	2R_18577886_SNP [dm3] 2R_22690381_SNP [dm6]	C	T	2.450e^-4	0.414	UPSTREAM CR44764 DOWNSTREAM CR44762 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	18577897	2R_18577897_SNP [dm3] 2R_22690392_SNP [dm6]	A	T	2.450e^-4	0.414	UPSTREAM CR44764 DOWNSTREAM CR44762 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	18621474	2R_18621474_SNP [dm3] 2R_22733969_SNP [dm6]	G	A	2.450e^-4	0.414	SYNONYMOUS_CODING jbug
2R	18621504	2R_18621504_SNP [dm3] 2R_22733999_SNP [dm6]	A	G	2.450e^-4	0.414	SYNONYMOUS_CODING jbug
2R	18621581	2R_18621581_SNP [dm3] 2R_22734076_SNP [dm6]	A	G	2.450e^-4	0.414	SYNONYMOUS_CODING jbug
2R	7526935	2R_7526935_SNP [dm3] 2R_11639430_SNP [dm6]	C	T	2.450e^-4	0.414	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7527521	2R_7527521_SNP [dm3] 2R_11640016_SNP [dm6]	C	A	2.450e^-4	0.414	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7528137	2R_7528137_SNP [dm3] 2R_11640632_SNP [dm6]	A	G	2.450e^-4	0.414	UTR_5_PRIME CG9005 DOWNSTREAM CG9003	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	7528497	2R_7528497_SNP [dm3] 2R_11640992_SNP [dm6]	C	T	2.450e^-4	0.414	UPSTREAM CG9005 DOWNSTREAM CG9003 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	7540675	2R_7540675_SNP [dm3] 2R_11653170_SNP [dm6]	T	G	2.450e^-4	0.414	UPSTREAM tRNA:CR30254 DOWNSTREAM CG34228 & 1 other INTRON Roc2	TF binding site mE1_TFBS_cad
2R	7540677	2R_7540677_SNP [dm3] 2R_11653172_SNP [dm6]	G	A	2.450e^-4	0.414	UPSTREAM tRNA:CR30254 DOWNSTREAM CG34228 & 1 other INTRON Roc2	TF binding site mE1_TFBS_cad
3R	10121426	3R_10121426_SNP [dm3] 3R_14295704_SNP [dm6]	T	A	2.450e^-4	0.414	INTRON CG12207
3R	10286169	3R_10286169_SNP [dm3] 3R_14460447_SNP [dm6]	G	A	2.450e^-4	0.414	INTRON cv-c
3R	10537666	3R_10537666_SNP [dm3] 3R_14711944_SNP [dm6]	T	C	2.450e^-4	0.414	INTRON kibra
3R	14709881	3R_14709881_INS [dm3] 3R_18884159_INS [dm6]	G	GG	2.450e^-4	0.414	INTERGENIC
3R	14889305	3R_14889305_SNP [dm3] 3R_19063583_SNP [dm6]	G	T	2.450e^-4	0.414	INTRON cdi
3R	21391526	3R_21391526_SNP [dm3] 3R_25565804_SNP [dm6]	G	A	2.450e^-4	0.414	INTRON msi
3R	24630316	3R_24630316_SNP [dm3] 3R_28804594_SNP [dm6]	G	C	2.450e^-4	0.414	INTERGENIC
X	15286060	X_15286060_SNP [dm3] X_15392027_SNP [dm6]	T	G	2.450e^-4	0.414	INTRON Cngl
X	15529895	X_15529895_DEL [dm3] X_15635862_DEL [dm6]	AA	C	2.450e^-4	0.414	UPSTREAM CR44423 INTERGENIC
X	15748936	X_15748936_SNP [dm3] X_15854903_SNP [dm6]	T	C	2.450e^-4	0.414	UTR_3_PRIME CG15914 & 1 other
X	15750727	X_15750727_SNP [dm3] X_15856694_SNP [dm6]	G	A	2.450e^-4	0.414	SYNONYMOUS_CODING Myb	TF binding site mE1_TFBS_sens
X	4035862	X_4035862_SNP [dm3] X_4141829_SNP [dm6]	C	T	2.450e^-4	0.414	SYNONYMOUS_CODING Fas2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	9875220	X_9875220_SNP [dm3] X_9981187_SNP [dm6]	C	T	2.450e^-4	0.414	UPSTREAM CG15252 INTERGENIC
2L	3708954	2L_3708954_SNP [dm3] 2L_3708954_SNP [dm6]	T	C	2.452e^-4	0.414	INTRON cutlet	TF binding site mE1_TFBS_cad
2L	3709184	2L_3709184_SNP [dm3] 2L_3709184_SNP [dm6]	G	A	2.452e^-4	0.414	SYNONYMOUS_CODING cutlet	TF binding site mE1_TFBS_cad
2L	3709240	2L_3709240_SNP [dm3] 2L_3709240_SNP [dm6]	C	A	2.452e^-4	0.414	INTRON cutlet	TF binding site mE1_TFBS_cad
3L	14370275	3L_14370275_INS [dm3] 3L_14377175_INS [dm6]	A	AG	2.452e^-4	0.414	INTERGENIC
3R	26159255	3R_26159255_SNP [dm3] 3R_30333533_SNP [dm6]	C	G	2.453e^-4	0.414	INTRON hdc
2L	14731333	2L_14731333_SNP [dm3] 2L_14731333_SNP [dm6]	G	C	2.455e^-4	0.414	INTERGENIC
2L	10413662	2L_10413662_SNP [dm3] 2L_10413662_SNP [dm6]	T	C	2.470e^-4	0.414	UPSTREAM Klp31E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	10261178	3R_10261178_SNP [dm3] 3R_14435456_SNP [dm6]	T	C	2.500e^-4	0.414	INTRON cv-c
X	16089019	X_16089019_SNP [dm3] X_16194986_SNP [dm6]	A	C	2.531e^-4	0.414	INTERGENIC
2R	18577787	2R_18577787_SNP [dm3] 2R_22690282_SNP [dm6]	T	A	2.535e^-4	0.414	UPSTREAM CR44764 DOWNSTREAM CR44762 EXON CR44763	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	7540687	2R_7540687_SNP [dm3] 2R_11653182_SNP [dm6]	G	A	2.535e^-4	0.414	UPSTREAM tRNA:CR30254 DOWNSTREAM CG34228 & 1 other INTRON Roc2	TF binding site mE1_TFBS_cad
2L	1113736	2L_1113736_SNP [dm3] 2L_1113736_SNP [dm6]	C	T	2.548e^-4	0.414	NON_SYNONYMOUS_CODING CG14340 DOWNSTREAM Pino
2L	1114810	2L_1114810_DEL [dm3] 2L_1114810_DEL [dm6]	CAT	C	2.548e^-4	0.414	UTR_3_PRIME Pino DOWNSTREAM CG14340
2L	20293828	2L_20293828_INS [dm3] 2L_20293828_INS [dm6]	A	ATG	2.554e^-4	0.414	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	20161896	3L_20161896_SNP [dm3] 3L_20168796_SNP [dm6]	T	C	2.622e^-4	0.414	UTR_5_PRIME CG42674 INTRON CG42674	TF binding site BDTNP1_TFBS_twi
3R	4754	3R_4754_SNP [dm3] 3R_4179032_SNP [dm6]	G	A	2.622e^-4	0.414	INTRON CG12581	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	10129387	2L_10129387_SNP [dm3] 2L_10129387_SNP [dm6]	A	T	2.660e^-4	0.414	INTRON CG44153	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14960479	2L_14960479_DEL [dm3] 2L_14960479_DEL [dm6]	CGTCTGCC	AA	2.731e^-4	0.414	INTRON CG42313
2L	21797802	2L_21797802_SNP [dm3] 2L_21797802_SNP [dm6]	G	C	2.738e^-4	0.414	DOWNSTREAM CR44269 INTERGENIC	transposable element FlyBase
3L	6543979	3L_6543979_SNP [dm3] 3L_6550879_SNP [dm6]	G	C	2.744e^-4	0.414	UTR_5_PRIME CG18769 DOWNSTREAM sfl INTRON CG18769	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	14167063	3L_14167063_SNP [dm3] 3L_14173963_SNP [dm6]	G	T	2.751e^-4	0.414	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12291099	2L_12291099_SNP [dm3] 2L_12291099_SNP [dm6]	C	T	2.764e^-4	0.414	INTRON aret	TF binding site BDTNP1_TFBS_twi
2L	504142	2L_504142_SNP [dm3] 2L_504142_SNP [dm6]	A	C	2.764e^-4	0.414	INTRON ush
2L	504151	2L_504151_SNP [dm3] 2L_504151_SNP [dm6]	G	A	2.764e^-4	0.414	INTRON ush
2L	8206906	2L_8206906_SNP [dm3] 2L_8206906_SNP [dm6]	C	T	2.764e^-4	0.414	NON_SYNONYMOUS_CODING CG8419 UPSTREAM CR44121	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13459479	2L_13459479_SNP [dm3] 2L_13459479_SNP [dm6]	T	C	2.767e^-4	0.414	UPSTREAM CR45684 & 1 other INTRON CG42784
2L	13092520	2L_13092520_SNP [dm3] 2L_13092520_SNP [dm6]	T	G	2.829e^-4	0.414	INTERGENIC
2L	1482051	2L_1482051_SNP [dm3] 2L_1482051_SNP [dm6]	G	A	2.829e^-4	0.414	INTERGENIC
2L	1482098	2L_1482098_SNP [dm3] 2L_1482098_SNP [dm6]	T	A	2.829e^-4	0.414	INTERGENIC
2L	1482099	2L_1482099_SNP [dm3] 2L_1482099_SNP [dm6]	T	A	2.829e^-4	0.414	INTERGENIC
2L	1496016	2L_1496016_SNP [dm3] 2L_1496016_SNP [dm6]	C	T	2.829e^-4	0.414	SYNONYMOUS_CODING CG31926 DOWNSTREAM CG33128	TF binding site mE1_TFBS_sens
2L	1496037	2L_1496037_SNP [dm3] 2L_1496037_SNP [dm6]	A	G	2.829e^-4	0.414	SYNONYMOUS_CODING CG31926 DOWNSTREAM CG33128	TF binding site mE1_TFBS_sens
2L	1496076	2L_1496076_SNP [dm3] 2L_1496076_SNP [dm6]	T	C	2.829e^-4	0.414	SYNONYMOUS_CODING CG31926 DOWNSTREAM CG33128	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1496713	2L_1496713_SNP [dm3] 2L_1496713_SNP [dm6]	C	G	2.829e^-4	0.414	NON_SYNONYMOUS_CODING CG31926 UPSTREAM CG31661
2L	1496808	2L_1496808_SNP [dm3] 2L_1496808_SNP [dm6]	C	T	2.829e^-4	0.414	SYNONYMOUS_CODING CG31926 UPSTREAM CG31661
2L	1496880	2L_1496880_SNP [dm3] 2L_1496880_SNP [dm6]	C	T	2.829e^-4	0.414	SYNONYMOUS_CODING CG31926 UPSTREAM CG31661
2L	669869	2L_669869_SNP [dm3] 2L_669869_SNP [dm6]	T	G	2.829e^-4	0.414	INTRON ds	TF binding site BDTNP1_TFBS_twi
3R	15540900	3R_15540900_SNP [dm3] 3R_19715178_SNP [dm6]	A	G	2.829e^-4	0.414	DOWNSTREAM CG34286 INTERGENIC
3L	13596814	3L_13596814_SNP [dm3] 3L_13603714_SNP [dm6]	C	G	2.841e^-4	0.414	INTRON bru-3
3L	13951772	3L_13951772_SNP [dm3] 3L_13958672_SNP [dm6]	C	T	2.848e^-4	0.414	INTRON CG32137	TF binding site mE1_TFBS_inv
3L	13951803	3L_13951803_SNP [dm3] 3L_13958703_SNP [dm6]	C	T	2.848e^-4	0.414	INTRON CG32137	TF binding site mE1_TFBS_inv
3L	17692595	3L_17692595_SNP [dm3] 3L_17699495_SNP [dm6]	G	C	2.848e^-4	0.414	INTRON Ccn
3L	5120858	3L_5120858_SNP [dm3] 3L_5127758_SNP [dm6]	C	G	2.848e^-4	0.414	INTERGENIC
3L	19099626	3L_19099626_SNP [dm3] 3L_19106526_SNP [dm6]	T	C	2.885e^-4	0.414	UTR_3_PRIME CG14082 DOWNSTREAM CG14082
X	17481570	X_17481570_DEL [dm3] X_17587537_DEL [dm6]	GGCTT	CA	2.885e^-4	0.414	INTRON CG12991
X	10393878	X_10393878_SNP [dm3] X_10499845_SNP [dm6]	T	A	2.887e^-4	0.414	INTRON spri
3L	10632640	3L_10632640_SNP [dm3] 3L_10639540_SNP [dm6]	A	G	2.896e^-4	0.414	UTR_3_PRIME CG8009 UPSTREAM CG18628 DOWNSTREAM CG32066
2R	18556551	2R_18556551_SNP [dm3] 2R_22669046_SNP [dm6]	G	T	2.924e^-4	0.414	UPSTREAM CG13516 DOWNSTREAM CG30269 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16091202	3R_16091202_DEL [dm3] 3R_20265480_DEL [dm6]	GCAG	G	2.924e^-4	0.414	INTRON cic
X	4553542	X_4553542_SNP [dm3] X_4659509_SNP [dm6]	C	T	2.933e^-4	0.414	SYNONYMOUS_CODING CG3009 INTRON CG3009	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	12391216	2L_12391216_INS [dm3] 2L_12391216_INS [dm6]	A	AATACGTTGCTCCACTGA...	2.944e^-4	0.414	INTRON bru-2
3L	10532114	3L_10532114_SNP [dm3] 3L_10539014_SNP [dm6]	A	C	2.969e^-4	0.414	INTRON A2bp1
2L	5678774	2L_5678774_SNP [dm3] 2L_5678774_SNP [dm6]	C	A	2.980e^-4	0.414	UTR_5_PRIME CG12511 INTRON CG12511
2L	10482112	2L_10482112_SNP [dm3] 2L_10482112_SNP [dm6]	G	A	2.991e^-4	0.414	SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2	TF binding site mE1_TFBS_sens
2L	1114929	2L_1114929_SNP [dm3] 2L_1114929_SNP [dm6]	G	A	2.991e^-4	0.414	UTR_3_PRIME Pino DOWNSTREAM CG14340
2L	1114933	2L_1114933_SNP [dm3] 2L_1114933_SNP [dm6]	A	G	2.991e^-4	0.414	UTR_3_PRIME Pino DOWNSTREAM CG14340
2L	1114935	2L_1114935_SNP [dm3] 2L_1114935_SNP [dm6]	T	C	2.991e^-4	0.414	UTR_3_PRIME Pino DOWNSTREAM CG14340
3L	14865968	3L_14865968_SNP [dm3] 3L_14872868_SNP [dm6]	G	A	2.994e^-4	0.414	INTRON CG17839	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14866139	3L_14866139_SNP [dm3] 3L_14873039_SNP [dm6]	C	A	2.994e^-4	0.414	INTRON CG17839
2L	3093250	2L_3093250_SNP [dm3] 2L_3093250_SNP [dm6]	T	G	2.995e^-4	0.414	INTRON toc
X	2775880	X_2775880_SNP [dm3] X_2881847_SNP [dm6]	T	C	2.995e^-4	0.414	DOWNSTREAM CG14418 INTRON kirre
X	2792378	X_2792378_SNP [dm3] X_2898345_SNP [dm6]	T	C	2.995e^-4	0.414	INTRON kirre
2L	11015926	2L_11015926_SNP [dm3] 2L_11015926_SNP [dm6]	T	C	2.998e^-4	0.414	SYNONYMOUS_CODING Acp32CD INTRON Samuel	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11036304	2L_11036304_DEL [dm3] 2L_11036304_DEL [dm6]	GAAAAGTTACATG...	G	2.998e^-4	0.414	DOWNSTREAM CG18666 INTRON Samuel	TF binding site mE1_TFBS_cad
2L	12148316	2L_12148316_SNP [dm3] 2L_12148316_SNP [dm6]	T	A	2.998e^-4	0.414	INTRON CG31760
3R	20011302	3R_20011302_SNP [dm3] 3R_24185580_SNP [dm6]	C	T	3.005e^-4	0.414	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2R	16525372	2R_16525372_SNP [dm3] 2R_20637867_SNP [dm6]	T	C	3.024e^-4	0.414	SYNONYMOUS_CODING CG13436 INTRON rig	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3112576	3L_3112576_SNP [dm3] 3L_3112576_SNP [dm6]	A	T	3.029e^-4	0.414	INTRON CG45067
3L	21085168	3L_21085168_SNP [dm3] 3L_21092068_SNP [dm6]	T	A	3.036e^-4	0.414	INTRON ko
3R	14679561	3R_14679561_SNP [dm3] 3R_18853839_SNP [dm6]	T	A	3.038e^-4	0.414	INTERGENIC
2L	11462364	2L_11462364_SNP [dm3] 2L_11462364_SNP [dm6]	C	T	3.048e^-4	0.414	INTERGENIC
2R	16061989	2R_16061989_SNP [dm3] 2R_20174484_SNP [dm6]	A	G	3.061e^-4	0.414	INTERGENIC
X	19357808	X_19357808_SNP [dm3] X_19463775_SNP [dm6]	C	T	3.084e^-4	0.414	INTRON kek5
3R	26030379	3R_26030379_SNP [dm3] 3R_30204657_SNP [dm6]	A	G	3.088e^-4	0.414	INTERGENIC
3R	4903559	3R_4903559_SNP [dm3] 3R_9077837_SNP [dm6]	C	T	3.089e^-4	0.414	INTRON pum
3R	6404071	3R_6404071_SNP [dm3] 3R_10578349_SNP [dm6]	A	G	3.089e^-4	0.414	INTRON hth	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6404075	3R_6404075_DEL [dm3] 3R_10578353_DEL [dm6]	GA	G	3.089e^-4	0.414	INTRON hth	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6404078	3R_6404078_SNP [dm3] 3R_10578356_SNP [dm6]	T	G	3.089e^-4	0.414	INTRON hth	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6404080	3R_6404080_SNP [dm3] 3R_10578358_SNP [dm6]	C	T	3.089e^-4	0.414	INTRON hth	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8044878	3R_8044878_SNP [dm3] 3R_12219156_SNP [dm6]	T	A	3.089e^-4	0.414	SYNONYMOUS_CODING CG4848 DOWNSTREAM CG4860	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8625328	3R_8625328_SNP [dm3] 3R_12799606_SNP [dm6]	G	T	3.089e^-4	0.414	INTERGENIC
3R	23793329	3R_23793329_SNP [dm3] 3R_27967607_SNP [dm6]	A	T	3.092e^-4	0.414	DOWNSTREAM CG4849 INTRON betaTub97EF
2R	19617563	2R_19617563_SNP [dm3] 2R_23730040_SNP [dm6]	G	A	3.094e^-4	0.414	INTRON Sesn
3L	8448759	3L_8448759_SNP [dm3] 3L_8455659_SNP [dm6]	A	G	3.095e^-4	0.414	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	8448762	3L_8448762_SNP [dm3] 3L_8455662_SNP [dm6]	G	T	3.095e^-4	0.414	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1820015	3L_1820015_SNP [dm3] 3L_1820015_SNP [dm6]	G	T	3.098e^-4	0.414	INTRON GV1
3L	5907938	3L_5907938_SNP [dm3] 3L_5914838_SNP [dm6]	T	C	3.098e^-4	0.414	INTRON CG13288
3L	6158529	3L_6158529_SNP [dm3] 3L_6165429_SNP [dm6]	T	C	3.098e^-4	0.414	UTR_3_PRIME CG10289 DOWNSTREAM CG13296
3L	7921405	3L_7921405_SNP [dm3] 3L_7928305_SNP [dm6]	C	T	3.098e^-4	0.414	SYNONYMOUS_CODING syd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10939101	3R_10939101_SNP [dm3] 3R_15113379_SNP [dm6]	A	G	3.098e^-4	0.414	INTRON CG42788
3R	16824323	3R_16824323_SNP [dm3] 3R_20998601_SNP [dm6]	A	T	3.098e^-4	0.414	INTRON Calx
3R	23316920	3R_23316920_SNP [dm3] 3R_27491198_SNP [dm6]	G	T	3.099e^-4	0.414	INTERGENIC
2L	3882834	2L_3882834_SNP [dm3] 2L_3882834_SNP [dm6]	A	T	3.100e^-4	0.414	INTRON capu
2L	8485304	2L_8485304_SNP [dm3] 2L_8485304_SNP [dm6]	G	T	3.126e^-4	0.414	SYNONYMOUS_CODING d UPSTREAM unsRNA:d-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12391185	2L_12391185_INS [dm3] 2L_12391185_INS [dm6]	T	TT	3.190e^-4	0.414	INTRON bru-2
3R	26152824	3R_26152824_SNP [dm3] 3R_30327102_SNP [dm6]	G	A	3.202e^-4	0.414	INTRON hdc
3R	14883001	3R_14883001_SNP [dm3] 3R_19057279_SNP [dm6]	A	C	3.240e^-4	0.414	INTRON cdi
3L	6165168	3L_6165168_SNP [dm3] 3L_6172068_SNP [dm6]	T	C	3.261e^-4	0.414	SYNONYMOUS_CODING CG10289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10692042	2L_10692042_SNP [dm3] 2L_10692042_SNP [dm6]	A	C	3.285e^-4	0.414	DOWNSTREAM CG17108 INTERGENIC
2L	14065066	2L_14065066_SNP [dm3] 2L_14065066_SNP [dm6]	C	A	3.285e^-4	0.414	INTRON nAChRalpha5	TF binding site mE1_TFBS_sbb
2L	1748115	2L_1748115_SNP [dm3] 2L_1748115_SNP [dm6]	T	A	3.285e^-4	0.414	INTRON CG17646
2L	5620721	2L_5620721_SNP [dm3] 2L_5620721_SNP [dm6]	T	G	3.285e^-4	0.414	UTR_3_PRIME Cyp6a16 UPSTREAM CR44796 DOWNSTREAM Cyp6a16
2L	10081659	2L_10081659_SNP [dm3] 2L_10081659_SNP [dm6]	G	A	3.304e^-4	0.414	SYNONYMOUS_CODING CG44153	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219698	3L_10219698_SNP [dm3] 3L_10226598_SNP [dm6]	A	G	3.331e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219732	3L_10219732_INS [dm3] 3L_10226632_INS [dm6]	T	TTTTTAT	3.331e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219737	3L_10219737_INS [dm3] 3L_10226637_INS [dm6]	G	GTATTT	3.331e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19375532	2R_19375532_INS [dm3] 2R_23488009_INS [dm6]	C	CC	3.334e^-4	0.414	INTRON CG43795
2L	12694258	2L_12694258_SNP [dm3] 2L_12694258_SNP [dm6]	A	G	3.335e^-4	0.414	UPSTREAM PICK1 DOWNSTREAM CG6153 INTRON CG5780
2L	6268118	2L_6268118_SNP [dm3] 2L_6268118_SNP [dm6]	C	T	3.335e^-4	0.414	INTRON Ddr
2R	2015745	2R_2015745_SNP [dm3] 2R_6128240_SNP [dm6]	G	T	3.335e^-4	0.414	INTRON EcR
2R	18950497	2R_18950497_SNP [dm3] 2R_23062974_SNP [dm6]	C	T	3.365e^-4	0.414	SYNONYMOUS_CODING CG9890 UPSTREAM l_2_06496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	20564850	X_20564850_DEL [dm3] X_20693823_DEL [dm6]	TT	T	3.367e^-4	0.414	UPSTREAM run INTRON run	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16994322	2R_16994322_SNP [dm3] 2R_21106817_SNP [dm6]	G	T	3.368e^-4	0.414	INTRON ktub	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19132626	2R_19132626_SNP [dm3] 2R_23245103_SNP [dm6]	G	A	3.368e^-4	0.414	START_GAINED yip3 UTR_5_PRIME yip3 INTRON yip3
2L	3769504	2L_3769504_SNP [dm3] 2L_3769504_SNP [dm6]	A	G	3.374e^-4	0.414	UTR_3_PRIME CG43707 DOWNSTREAM CR43704 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14658691	2R_14658691_SNP [dm3] 2R_18771186_SNP [dm6]	C	A	3.374e^-4	0.414	UPSTREAM Mctp DOWNSTREAM tRNA:CR30229 INTRON Mctp
3L	18003052	3L_18003052_SNP [dm3] 3L_18009952_SNP [dm6]	G	T	3.376e^-4	0.414	INTRON Eip75B
3R	10800684	3R_10800684_SNP [dm3] 3R_14974962_SNP [dm6]	C	T	3.376e^-4	0.414	INTERGENIC
3R	10801736	3R_10801736_SNP [dm3] 3R_14976014_SNP [dm6]	C	T	3.376e^-4	0.414	INTERGENIC
3R	10801760	3R_10801760_SNP [dm3] 3R_14976038_SNP [dm6]	A	G	3.376e^-4	0.414	INTERGENIC
3R	14703329	3R_14703329_SNP [dm3] 3R_18877607_SNP [dm6]	T	C	3.376e^-4	0.414	DOWNSTREAM CG14298 INTERGENIC
3R	19897624	3R_19897624_SNP [dm3] 3R_24071902_SNP [dm6]	G	T	3.376e^-4	0.414	INTRON 4EHP
3R	21716256	3R_21716256_SNP [dm3] 3R_25890534_SNP [dm6]	T	G	3.376e^-4	0.414	INTRON Lnk
3R	23594845	3R_23594845_SNP [dm3] 3R_27769123_SNP [dm6]	C	T	3.376e^-4	0.414	UTR_3_PRIME CG34353 DOWNSTREAM CG34353
3R	25860454	3R_25860454_SNP [dm3] 3R_30034732_SNP [dm6]	T	A	3.376e^-4	0.414	UTR_3_PRIME Axn DOWNSTREAM CG7928 EXON CR44045	TF binding site mE1_TFBS_cad
3R	26364187	3R_26364187_SNP [dm3] 3R_30538465_SNP [dm6]	A	C	3.376e^-4	0.414	UPSTREAM tmod INTRON tmod
3R	26364202	3R_26364202_SNP [dm3] 3R_30538480_SNP [dm6]	T	A	3.376e^-4	0.414	UPSTREAM tmod INTRON tmod
2L	13349308	2L_13349308_SNP [dm3] 2L_13349308_SNP [dm6]	T	C	3.380e^-4	0.414	DOWNSTREAM CG9395 & 1 other INTERGENIC
2L	14973398	2L_14973398_SNP [dm3] 2L_14973398_SNP [dm6]	G	A	3.380e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	8012069	2L_8012069_SNP [dm3] 2L_8012069_SNP [dm6]	A	G	3.380e^-4	0.414	UPSTREAM Tg INTRON Tg
2L	9505044	2L_9505044_SNP [dm3] 2L_9505044_SNP [dm6]	C	G	3.380e^-4	0.414	INTRON CG33298
2L	9505057	2L_9505057_SNP [dm3] 2L_9505057_SNP [dm6]	C	A	3.380e^-4	0.414	INTRON CG33298
2R	11835295	2R_11835295_SNP [dm3] 2R_15947790_SNP [dm6]	G	A	3.380e^-4	0.414	DOWNSTREAM Cyp4aa1 INTRON Strn-Mlck
2R	11835305	2R_11835305_SNP [dm3] 2R_15947800_SNP [dm6]	G	A	3.380e^-4	0.414	DOWNSTREAM Cyp4aa1 INTRON Strn-Mlck
2R	11835314	2R_11835314_SNP [dm3] 2R_15947809_SNP [dm6]	A	C	3.380e^-4	0.414	DOWNSTREAM Cyp4aa1 INTRON Strn-Mlck
2R	14179379	2R_14179379_SNP [dm3] 2R_18291874_SNP [dm6]	C	T	3.380e^-4	0.414	UPSTREAM CG14502 INTRON CG14502 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	14980549	2R_14980549_SNP [dm3] 2R_19093044_SNP [dm6]	T	G	3.380e^-4	0.414	INTRON 5-HT1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20072333	2R_20072333_SNP [dm3] 2R_24184810_SNP [dm6]	C	T	3.380e^-4	0.414	UTR_3_PRIME Nop60B UPSTREAM snoRNA:Me28S-G1083a & 3 others INTRON Nop60B	TF binding site BDTNP1_TFBS_z
2R	4522423	2R_4522423_SNP [dm3] 2R_8634918_SNP [dm6]	T	C	3.380e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	7540734	2R_7540734_SNP [dm3] 2R_11653229_SNP [dm6]	C	A	3.380e^-4	0.414	UPSTREAM tRNA:CR30254 DOWNSTREAM CG34228 & 1 other INTRON Roc2
3L	10589550	3L_10589550_SNP [dm3] 3L_10596450_SNP [dm6]	T	A	3.380e^-4	0.414	INTERGENIC
3L	10589578	3L_10589578_SNP [dm3] 3L_10596478_SNP [dm6]	G	T	3.380e^-4	0.414	INTERGENIC
3L	10589588	3L_10589588_SNP [dm3] 3L_10596488_SNP [dm6]	T	C	3.380e^-4	0.414	INTERGENIC
3L	12705130	3L_12705130_SNP [dm3] 3L_12712030_SNP [dm6]	C	A	3.380e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	14865824	3L_14865824_SNP [dm3] 3L_14872724_SNP [dm6]	A	T	3.380e^-4	0.414	INTRON CG17839	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17459959	3L_17459959_SNP [dm3] 3L_17466859_SNP [dm6]	C	G	3.380e^-4	0.414	DOWNSTREAM CG7603 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18016249	3L_18016249_SNP [dm3] 3L_18023149_SNP [dm6]	A	T	3.380e^-4	0.414	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	18962220	3L_18962220_DEL [dm3] 3L_18969120_DEL [dm6]	TATACTTATATGT...	T	3.380e^-4	0.414	INTERGENIC
3L	3739732	3L_3739732_SNP [dm3] 3L_3739732_SNP [dm6]	G	A	3.380e^-4	0.414	INTRON CG32264
3L	4276107	3L_4276107_SNP [dm3] 3L_4276107_SNP [dm6]	A	C	3.380e^-4	0.414	SYNONYMOUS_CODING CG1273	TF binding site mE1_TFBS_sens
3L	4587249	3L_4587249_SNP [dm3] 3L_4587249_SNP [dm6]	G	T	3.380e^-4	0.414	INTRON CG42540
3L	4718012	3L_4718012_SNP [dm3] 3L_4718012_SNP [dm6]	T	A	3.380e^-4	0.414	INTRON RhoGEF64C
3L	5305238	3L_5305238_SNP [dm3] 3L_5312138_SNP [dm6]	G	C	3.380e^-4	0.414	INTERGENIC
3L	7807850	3L_7807850_SNP [dm3] 3L_7814750_SNP [dm6]	C	T	3.380e^-4	0.414	UTR_3_PRIME Pdp1
3L	8961431	3L_8961431_SNP [dm3] 3L_8968331_SNP [dm6]	G	T	3.380e^-4	0.414	UPSTREAM CG5026 DOWNSTREAM CG5021 INTERGENIC
3R	12829498	3R_12829498_SNP [dm3] 3R_17003776_SNP [dm6]	T	A	3.380e^-4	0.414	INTRON Irc
3R	14095118	3R_14095118_SNP [dm3] 3R_18269396_SNP [dm6]	G	T	3.380e^-4	0.414	INTRON CG18599	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	16568845	3R_16568845_SNP [dm3] 3R_20743123_SNP [dm6]	T	G	3.380e^-4	0.414	SYNONYMOUS_CODING CG31199 INTRON CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17082125	3R_17082125_SNP [dm3] 3R_21256403_SNP [dm6]	A	G	3.380e^-4	0.414	INTRON ETHR
3R	17379256	3R_17379256_SNP [dm3] 3R_21553534_SNP [dm6]	C	G	3.380e^-4	0.414	INTRON slou
3R	17778428	3R_17778428_SNP [dm3] 3R_21952706_SNP [dm6]	A	T	3.380e^-4	0.414	INTRON Eip93F
3R	21703700	3R_21703700_SNP [dm3] 3R_25877978_SNP [dm6]	C	T	3.380e^-4	0.414	INTRON Tsp96F	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3R	24385541	3R_24385541_SNP [dm3] 3R_28559819_SNP [dm6]	C	T	3.380e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24636764	3R_24636764_SNP [dm3] 3R_28811042_SNP [dm6]	G	A	3.380e^-4	0.414	NON_SYNONYMOUS_CODING wdn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
3R	24637128	3R_24637128_SNP [dm3] 3R_28811406_SNP [dm6]	T	A	3.380e^-4	0.414	UPSTREAM CG1646 & 1 other INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	24648906	3R_24648906_SNP [dm3] 3R_28823184_SNP [dm6]	G	A	3.380e^-4	0.414	NON_SYNONYMOUS_CODING CG1647	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25298294	3R_25298294_SNP [dm3] 3R_29472572_SNP [dm6]	C	T	3.380e^-4	0.414	INTRON Ptp99A
3R	26038374	3R_26038374_SNP [dm3] 3R_30212652_SNP [dm6]	G	A	3.380e^-4	0.414	UPSTREAM Cec2 DOWNSTREAM Cec-Psi1 & 2 others INTERGENIC
X	10112438	X_10112438_SNP [dm3] X_10218405_SNP [dm6]	G	A	3.380e^-4	0.414	DOWNSTREAM CR45629 INTRON CG15308 & 1 other
X	10355736	X_10355736_SNP [dm3] X_10461703_SNP [dm6]	G	T	3.380e^-4	0.414	UTR_3_PRIME Neb-cGP DOWNSTREAM nocte & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
X	15183800	X_15183800_INS [dm3] X_15289767_INS [dm6]	A	AGAAACG	3.380e^-4	0.414	UPSTREAM CR44664 DOWNSTREAM CR44663 INTERGENIC
X	20294800	X_20294800_SNP [dm3] X_20423773_SNP [dm6]	T	C	3.380e^-4	0.414	UTR_5_PRIME Pp4-19C UPSTREAM Pp4-19C & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	3702033	X_3702033_SNP [dm3] X_3808000_SNP [dm6]	T	A	3.380e^-4	0.414	INTRON fd3F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	4488874	X_4488874_SNP [dm3] X_4594841_SNP [dm6]	T	A	3.380e^-4	0.414	INTRON CR32773
X	4488875	X_4488875_SNP [dm3] X_4594842_SNP [dm6]	C	T	3.380e^-4	0.414	INTRON CR32773
X	8752743	X_8752743_SNP [dm3] X_8858710_SNP [dm6]	G	A	3.380e^-4	0.414	INTRON CG12075
X	8752771	X_8752771_SNP [dm3] X_8858738_SNP [dm6]	T	A	3.380e^-4	0.414	INTRON CG12075
X	13192048	X_13192048_SNP [dm3] X_13298015_SNP [dm6]	G	T	3.381e^-4	0.414	UTR_3_PRIME CG1622 INTRON CG1764 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1479440	2L_1479440_SNP [dm3] 2L_1479440_SNP [dm6]	C	T	3.399e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19094426	2L_19094426_SNP [dm3] 2L_19094426_SNP [dm6]	T	G	3.399e^-4	0.414	INTRON Lim3
2L	19094461	2L_19094461_SNP [dm3] 2L_19094461_SNP [dm6]	T	G	3.399e^-4	0.414	INTRON Lim3
3R	14007226	3R_14007226_SNP [dm3] 3R_18181504_SNP [dm6]	C	T	3.412e^-4	0.414	SYNONYMOUS_CODING cdm	TF binding site mE1_TFBS_cad
3R	24794716	3R_24794716_SNP [dm3] 3R_28968994_SNP [dm6]	G	A	3.417e^-4	0.414	INTRON CG14521
2R	9649871	2R_9649871_SNP [dm3] 2R_13762366_SNP [dm6]	A	T	3.458e^-4	0.414	INTERGENIC
2L	4040240	2L_4040240_SNP [dm3] 2L_4040240_SNP [dm6]	C	T	3.545e^-4	0.414	INTRON ed
2R	19201169	2R_19201169_SNP [dm3] 2R_23313646_SNP [dm6]	A	T	3.581e^-4	0.414	INTRON HP1Lcsd	TF binding site BDTNP1_TFBS_twi
2R	16648700	2R_16648700_SNP [dm3] 2R_20761195_SNP [dm6]	A	T	3.585e^-4	0.414	INTERGENIC
3L	9503056	3L_9503056_SNP [dm3] 3L_9509956_SNP [dm6]	C	G	3.594e^-4	0.414	UTR_3_PRIME RpS9 UPSTREAM CG3408 DOWNSTREAM snoRNA:Me28S-G3253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	19797925	3R_19797925_SNP [dm3] 3R_23972203_SNP [dm6]	T	C	3.602e^-4	0.414	INTRON CG31140
3L	15164899	3L_15164899_SNP [dm3] 3L_15171799_SNP [dm6]	A	G	3.605e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13867779	2R_13867779_SNP [dm3] 2R_17980274_SNP [dm6]	C	T	3.612e^-4	0.414	INTRON dpr13
3L	17678137	3L_17678137_SNP [dm3] 3L_17685037_SNP [dm6]	A	C	3.612e^-4	0.414	INTERGENIC
2L	7144201	2L_7144201_SNP [dm3] 2L_7144201_SNP [dm6]	T	A	3.618e^-4	0.414	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20974224	2L_20974224_SNP [dm3] 2L_20974224_SNP [dm6]	A	G	3.646e^-4	0.414	INTRON CG42238
2R	4424402	2R_4424402_SNP [dm3] 2R_8536897_SNP [dm6]	A	C	3.646e^-4	0.414	INTERGENIC
3R	10588313	3R_10588313_SNP [dm3] 3R_14762591_SNP [dm6]	C	T	3.646e^-4	0.414	INTRON jvl
3R	16551669	3R_16551669_MNP [dm3] 3R_20725947_MNP [dm6]	TCT	CTA	3.646e^-4	0.414	INTERGENIC
3R	16551727	3R_16551727_SNP [dm3] 3R_20726005_SNP [dm6]	G	A	3.646e^-4	0.414	INTERGENIC
3R	25359224	3R_25359224_SNP [dm3] 3R_29533502_SNP [dm6]	A	T	3.646e^-4	0.414	INTERGENIC
2R	16818906	2R_16818906_SNP [dm3] 2R_20931401_SNP [dm6]	C	T	3.660e^-4	0.414	INTRON Rx
3R	21369134	3R_21369134_SNP [dm3] 3R_25543412_SNP [dm6]	C	T	3.669e^-4	0.414	INTRON msi
2L	18962981	2L_18962981_SNP [dm3] 2L_18962981_SNP [dm6]	A	G	3.675e^-4	0.414	NON_SYNONYMOUS_CODING Nak
2L	20924144	2L_20924144_SNP [dm3] 2L_20924144_SNP [dm6]	T	C	3.712e^-4	0.414	DOWNSTREAM RPA2 INTRON CR33318
2L	22817606	2L_22817606_SNP [dm3] 2L_22924874_SNP [dm6]	C	A	3.712e^-4	0.414	UTR_5_PRIME lt
2R	6043403	2R_6043403_SNP [dm3] 2R_10155898_SNP [dm6]	T	C	3.723e^-4	0.414	DOWNSTREAM mlt INTRON KCNQ
3L	8918554	3L_8918554_SNP [dm3] 3L_8925454_SNP [dm6]	G	A	3.723e^-4	0.414	INTRON Tsp66E	TF binding site BDTNP1_TFBS_twi
3L	8930035	3L_8930035_SNP [dm3] 3L_8936935_SNP [dm6]	C	T	3.723e^-4	0.414	UPSTREAM CG43783 DOWNSTREAM orb2 INTRON CG43783
3L	8930353	3L_8930353_SNP [dm3] 3L_8937253_SNP [dm6]	T	C	3.723e^-4	0.414	UTR_3_PRIME orb2 UPSTREAM CG43783 INTRON CG43783
3R	10822437	3R_10822437_SNP [dm3] 3R_14996715_SNP [dm6]	A	T	3.723e^-4	0.414	INTERGENIC
3R	14896340	3R_14896340_SNP [dm3] 3R_19070618_SNP [dm6]	A	C	3.723e^-4	0.414	INTRON cdi
X	18801422	X_18801422_SNP [dm3] X_18907389_SNP [dm6]	A	G	3.723e^-4	0.414	INTRON CG7378
X	4204484	X_4204484_SNP [dm3] X_4310451_SNP [dm6]	G	A	3.723e^-4	0.414	DOWNSTREAM CG15579 INTERGENIC
2L	12134290	2L_12134290_SNP [dm3] 2L_12134290_SNP [dm6]	T	G	3.727e^-4	0.414	UPSTREAM rho-6 INTERGENIC
2L	14536600	2L_14536600_SNP [dm3] 2L_14536600_SNP [dm6]	T	A	3.727e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6659755	2R_6659755_SNP [dm3] 2R_10772250_SNP [dm6]	A	G	3.762e^-4	0.414	INTRON CG33144	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	437032	2L_437032_SNP [dm3] 2L_437032_SNP [dm6]	G	A	3.775e^-4	0.414	INTRON ex
2R	15383042	2R_15383042_SNP [dm3] 2R_19495537_SNP [dm6]	C	T	3.775e^-4	0.414	SYNONYMOUS_CODING hpo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	8365577	X_8365577_SNP [dm3] X_8471544_SNP [dm6]	C	G	3.775e^-4	0.414	SYNONYMOUS_CODING Cp7Fa INTRON CG33223
2L	674833	2L_674833_SNP [dm3] 2L_674833_SNP [dm6]	G	A	3.814e^-4	0.414	INTRON ds
3R	12783925	3R_12783925_SNP [dm3] 3R_16958203_SNP [dm6]	T	A	3.816e^-4	0.414	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3R	12790118	3R_12790118_SNP [dm3] 3R_16964396_SNP [dm6]	T	A	3.816e^-4	0.414	UPSTREAM Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_dl
3L	9365040	3L_9365040_SNP [dm3] 3L_9371940_SNP [dm6]	G	A	3.861e^-4	0.414	SYNONYMOUS_CODING Hsp67Bc UPSTREAM Fdxh & 2 others	TF binding site mE1_TFBS_sens
2L	1033545	2L_1033545_SNP [dm3] 2L_1033545_SNP [dm6]	C	A	3.864e^-4	0.414	INTRON IA-2
3R	12079955	3R_12079955_INS [dm3] 3R_16254233_INS [dm6]	G	GCTG	3.870e^-4	0.414	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11811291	3R_11811291_DEL [dm3] 3R_15985569_DEL [dm6]	TT	T	3.877e^-4	0.414	UPSTREAM srp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	20440251	2R_20440251_SNP [dm3] 2R_24552728_SNP [dm6]	T	C	3.916e^-4	0.414	INTRON CG4622 & 1 other	TF binding site mE1_TFBS_chinmo
2L	13460652	2L_13460652_SNP [dm3] 2L_13460652_SNP [dm6]	G	A	3.932e^-4	0.414	DOWNSTREAM CG42810 INTRON CG42784
2L	13460703	2L_13460703_DEL [dm3] 2L_13460703_DEL [dm6]	ATGCCTTACAC...	T	3.932e^-4	0.414	DOWNSTREAM CG42810 INTRON CG42784
2L	13460913	2L_13460913_SNP [dm3] 2L_13460913_SNP [dm6]	G	A	3.932e^-4	0.414	UPSTREAM CG42784 DOWNSTREAM CG42810 INTRON CG42784
2L	13461171	2L_13461171_SNP [dm3] 2L_13461171_SNP [dm6]	T	G	3.932e^-4	0.414	UPSTREAM CG42784 DOWNSTREAM CG42810 INTRON CG42784	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20115740	2L_20115740_SNP [dm3] 2L_20115740_SNP [dm6]	C	T	3.962e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20115752	2L_20115752_DEL [dm3] 2L_20115752_DEL [dm6]	GACATAAAAATCG...	G	3.962e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20117465	2L_20117465_SNP [dm3] 2L_20117465_SNP [dm6]	G	A	3.962e^-4	0.414	INTERGENIC	transposable element FlyBase
2L	20117880	2L_20117880_SNP [dm3] 2L_20117880_SNP [dm6]	C	G	3.962e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	20119848	2L_20119848_SNP [dm3] 2L_20119848_SNP [dm6]	A	G	3.962e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_sens
2L	4659764	2L_4659764_SNP [dm3] 2L_4659764_SNP [dm6]	C	T	3.962e^-4	0.414	INTERGENIC
2R	4381995	2R_4381995_SNP [dm3] 2R_8494490_SNP [dm6]	C	T	3.962e^-4	0.414	UPSTREAM mtt INTRON mtt
2R	4687824	2R_4687824_SNP [dm3] 2R_8800319_SNP [dm6]	C	T	3.962e^-4	0.414	INTRON sns	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5931265	2L_5931265_SNP [dm3] 2L_5931265_SNP [dm6]	A	G	3.987e^-4	0.414	INTRON dsf
3R	26067691	3R_26067691_SNP [dm3] 3R_30241969_SNP [dm6]	C	T	3.991e^-4	0.414	INTRON CG9737	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3419753	2R_3419753_SNP [dm3] 2R_7532248_SNP [dm6]	C	A	4.028e^-4	0.414	DOWNSTREAM CR44209 INTRON Drat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11015974	2L_11015974_SNP [dm3] 2L_11015974_SNP [dm6]	C	T	4.055e^-4	0.414	SYNONYMOUS_CODING Acp32CD INTRON Samuel	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12271309	X_12271309_SNP [dm3] X_12377276_SNP [dm6]	A	T	4.068e^-4	0.414	INTRON Ir11a
2L	12201843	2L_12201843_SNP [dm3] 2L_12201843_SNP [dm6]	T	G	4.104e^-4	0.414	INTRON aret
2L	1477028	2L_1477028_SNP [dm3] 2L_1477028_SNP [dm6]	T	A	4.104e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_sens
2L	17653931	2L_17653931_SNP [dm3] 2L_17653931_SNP [dm6]	C	T	4.104e^-4	0.414	INTRON CadN
2L	17654108	2L_17654108_SNP [dm3] 2L_17654108_SNP [dm6]	C	T	4.104e^-4	0.414	INTRON CadN
2L	2612541	2L_2612541_SNP [dm3] 2L_2612541_SNP [dm6]	T	A	4.104e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6624362	X_6624362_SNP [dm3] X_6730329_SNP [dm6]	T	G	4.106e^-4	0.414	INTRON CG3168
3L	11450103	3L_11450103_SNP [dm3] 3L_11457003_SNP [dm6]	T	A	4.113e^-4	0.414	DOWNSTREAM CG12289 INTERGENIC
X	22049088	X_22049088_SNP [dm3] X_22647252_SNP [dm6]	T	C	4.121e^-4	0.414	INTERGENIC	transposable element FlyBase
3R	9979332	3R_9979332_SNP [dm3] 3R_14153610_SNP [dm6]	G	A	4.126e^-4	0.414	SYNONYMOUS_CODING CG9722 UPSTREAM CG42500 DOWNSTREAM CR44215
X	16655932	X_16655932_SNP [dm3] X_16761899_SNP [dm6]	A	T	4.141e^-4	0.414	INTRON if
X	16802440	X_16802440_SNP [dm3] X_16908407_SNP [dm6]	G	A	4.141e^-4	0.414	INTRON CR44754
2R	10913591	2R_10913591_SNP [dm3] 2R_15026086_SNP [dm6]	T	A	4.144e^-4	0.414	DOWNSTREAM CR45256 INTRON hbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7523266	2R_7523266_SNP [dm3] 2R_11635761_SNP [dm6]	A	G	4.144e^-4	0.414	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	13394669	3L_13394669_SNP [dm3] 3L_13401569_SNP [dm6]	C	G	4.144e^-4	0.414	UPSTREAM sens INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15080567	2L_15080567_SNP [dm3] 2L_15080567_SNP [dm6]	G	A	4.168e^-4	0.414	INTRON CG15270
2L	9986681	2L_9986681_SNP [dm3] 2L_9986681_SNP [dm6]	G	A	4.168e^-4	0.414	INTRON bib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	10588470	3L_10588470_SNP [dm3] 3L_10595370_SNP [dm6]	T	G	4.187e^-4	0.414	INTERGENIC
3L	2706965	3L_2706965_SNP [dm3] 3L_2706965_SNP [dm6]	A	C	4.187e^-4	0.414	INTRON Fife
3R	1951941	3R_1951941_SNP [dm3] 3R_6126219_SNP [dm6]	A	T	4.187e^-4	0.414	DOWNSTREAM CR43486 INTERGENIC
3R	19612169	3R_19612169_INS [dm3] 3R_23786447_INS [dm6]	C	CTCTACTACTGCTCG...	4.187e^-4	0.414	INTRON mbc
3R	25207121	3R_25207121_SNP [dm3] 3R_29381399_SNP [dm6]	G	A	4.187e^-4	0.414	INTRON Ptp99A
2L	16598529	2L_16598529_SNP [dm3] 2L_16598529_SNP [dm6]	A	T	4.205e^-4	0.414	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	16598558	2L_16598558_SNP [dm3] 2L_16598558_SNP [dm6]	G	C	4.205e^-4	0.414	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	16598581	2L_16598581_SNP [dm3] 2L_16598581_SNP [dm6]	G	T	4.205e^-4	0.414	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9344512	2L_9344512_SNP [dm3] 2L_9344512_SNP [dm6]	A	G	4.205e^-4	0.414	UTR_3_PRIME CG3748 DOWNSTREAM CG3748
2R	10841942	2R_10841942_SNP [dm3] 2R_14954437_SNP [dm6]	G	C	4.223e^-4	0.414	INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	27016747	3R_27016747_INS [dm3] 3R_31191025_INS [dm6]	C	CGCAC	4.225e^-4	0.414	INTRON mesh
X	8225954	X_8225954_DEL [dm3] X_8331921_DEL [dm6]	TGT	T	4.228e^-4	0.414	INTRON nAChRalpha3
X	8225959	X_8225959_SNP [dm3] X_8331926_SNP [dm6]	T	G	4.228e^-4	0.414	INTRON nAChRalpha3
2R	12865203	2R_12865203_SNP [dm3] 2R_16977698_SNP [dm6]	C	T	4.260e^-4	0.414	INTRON Cbp53E
2R	12865282	2R_12865282_SNP [dm3] 2R_16977777_SNP [dm6]	C	A	4.260e^-4	0.414	INTRON Cbp53E
2L	5641412	2L_5641412_SNP [dm3] 2L_5641412_SNP [dm6]	A	C	4.265e^-4	0.414	UPSTREAM mir-963 & 1 other DOWNSTREAM mir-959 & 3 others INTRON CG31646
2L	7207263	2L_7207263_SNP [dm3] 2L_7207263_SNP [dm6]	T	C	4.332e^-4	0.414	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784
2L	10258690	2L_10258690_SNP [dm3] 2L_10258690_SNP [dm6]	A	G	4.354e^-4	0.414	INTRON Pten
2L	15041379	2L_15041379_SNP [dm3] 2L_15041379_SNP [dm6]	C	T	4.354e^-4	0.414	SYNONYMOUS_CODING Su_H_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24107376	3R_24107376_DEL [dm3] 3R_28281654_DEL [dm6]	AA	A	4.384e^-4	0.414	UPSTREAM CG34436 INTERGENIC
3L	9373372	3L_9373372_SNP [dm3] 3L_9380272_SNP [dm6]	C	G	4.433e^-4	0.414	UPSTREAM Hsp67Ba EXON CR43481	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14029525	2L_14029525_SNP [dm3] 2L_14029525_SNP [dm6]	T	G	4.444e^-4	0.414	UTR_3_PRIME CG18095 DOWNSTREAM CG18095 & 1 other INTRON CG18095
3L	15253865	3L_15253865_SNP [dm3] 3L_15260765_SNP [dm6]	G	A	4.450e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12204746	2L_12204746_SNP [dm3] 2L_12204746_SNP [dm6]	A	G	4.457e^-4	0.414	INTRON aret
2L	12204763	2L_12204763_SNP [dm3] 2L_12204763_SNP [dm6]	T	G	4.457e^-4	0.414	INTRON aret
2L	12204768	2L_12204768_SNP [dm3] 2L_12204768_SNP [dm6]	G	A	4.457e^-4	0.414	INTRON aret
2R	7540726	2R_7540726_SNP [dm3] 2R_11653221_SNP [dm6]	A	T	4.457e^-4	0.414	UPSTREAM tRNA:CR30254 DOWNSTREAM CG34228 & 1 other INTRON Roc2
2R	19717667	2R_19717667_SNP [dm3] 2R_23830144_SNP [dm6]	C	T	4.472e^-4	0.414	NON_SYNONYMOUS_CODING CG5549
3L	7711789	3L_7711789_SNP [dm3] 3L_7718689_SNP [dm6]	T	C	4.480e^-4	0.414	UPSTREAM CG12262 & 1 other INTRON CG32373
3R	13710119	3R_13710119_SNP [dm3] 3R_17884397_SNP [dm6]	A	G	4.490e^-4	0.414	SYNONYMOUS_CODING Rim INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13710125	3R_13710125_SNP [dm3] 3R_17884403_SNP [dm6]	A	G	4.490e^-4	0.414	SYNONYMOUS_CODING Rim INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13710349	3R_13710349_SNP [dm3] 3R_17884627_SNP [dm6]	C	T	4.490e^-4	0.414	NON_SYNONYMOUS_CODING Rim INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22329344	3R_22329344_DEL [dm3] 3R_26503622_DEL [dm6]	GG	G	4.492e^-4	0.414	INTRON plum	TF binding site BDTNP1_TFBS_dl
3L	10290787	3L_10290787_SNP [dm3] 3L_10297687_SNP [dm6]	C	T	4.494e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	10131982	2L_10131982_SNP [dm3] 2L_10131982_SNP [dm6]	T	G	4.498e^-4	0.414	INTRON CG44153
3R	13499830	3R_13499830_SNP [dm3] 3R_17674108_SNP [dm6]	A	T	4.508e^-4	0.414	UTR_3_PRIME alt DOWNSTREAM alt & 1 other
3R	16569656	3R_16569656_SNP [dm3] 3R_20743934_SNP [dm6]	A	G	4.508e^-4	0.414	UPSTREAM CG31199 DOWNSTREAM CG31200 INTRON CG42322
3R	16569658	3R_16569658_INS [dm3] 3R_20743936_INS [dm6]	G	GCTTGAGG	4.508e^-4	0.414	UPSTREAM CG31199 DOWNSTREAM CG31200 INTRON CG42322
3R	16569842	3R_16569842_SNP [dm3] 3R_20744120_SNP [dm6]	G	T	4.508e^-4	0.414	UPSTREAM CG31199 DOWNSTREAM CG31200 INTRON CG42322	TF binding site mE1_TFBS_cad
3R	16569844	3R_16569844_SNP [dm3] 3R_20744122_SNP [dm6]	G	C	4.508e^-4	0.414	UPSTREAM CG31199 DOWNSTREAM CG31200 INTRON CG42322	TF binding site mE1_TFBS_cad
2R	4940942	2R_4940942_DEL [dm3] 2R_9053437_DEL [dm6]	AA	A	4.530e^-4	0.414	INTRON CG13743	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19561892	3R_19561892_SNP [dm3] 3R_23736170_SNP [dm6]	A	G	4.530e^-4	0.414	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	8480517	2L_8480517_SNP [dm3] 2L_8480517_SNP [dm6]	T	G	4.577e^-4	0.414	INTRON d	TF binding site mE1_TFBS_HSA
X	18047757	X_18047757_SNP [dm3] X_18153724_SNP [dm6]	G	A	4.581e^-4	0.414	INTERGENIC
3L	11015542	3L_11015542_SNP [dm3] 3L_11022442_SNP [dm6]	A	C	4.599e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	21085608	3L_21085608_SNP [dm3] 3L_21092508_SNP [dm6]	C	T	4.599e^-4	0.414	INTRON ko
3R	14649122	3R_14649122_SNP [dm3] 3R_18823400_SNP [dm6]	A	G	4.599e^-4	0.414	INTRON CG18208
3R	16091187	3R_16091187_SNP [dm3] 3R_20265465_SNP [dm6]	G	A	4.599e^-4	0.414	INTRON cic
3R	17083988	3R_17083988_SNP [dm3] 3R_21258266_SNP [dm6]	A	C	4.599e^-4	0.414	UTR_5_PRIME ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19286728	3R_19286728_SNP [dm3] 3R_23461006_SNP [dm6]	T	A	4.599e^-4	0.414	INTRON CG4374
3R	19798028	3R_19798028_SNP [dm3] 3R_23972306_SNP [dm6]	C	T	4.599e^-4	0.414	INTRON CG31140
3L	18719637	3L_18719637_SNP [dm3] 3L_18726537_SNP [dm6]	T	C	4.609e^-4	0.414	INTERGENIC
4	593763	4_593763_SNP [dm3] 4_573137_SNP [dm6]	G	C	4.609e^-4	0.414	INTRON Ephrin	TF binding site BDTNP1_TFBS_dl
2R	18188563	2R_18188563_SNP [dm3] 2R_22301058_SNP [dm6]	C	A	4.617e^-4	0.414	INTRON wdp	TF binding site mE1_TFBS_cad
3L	14221489	3L_14221489_SNP [dm3] 3L_14228389_SNP [dm6]	G	A	4.617e^-4	0.414	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_sna
3L	3546501	3L_3546501_SNP [dm3] 3L_3546501_SNP [dm6]	G	A	4.617e^-4	0.414	INTRON Eip63E
3R	16570205	3R_16570205_SNP [dm3] 3R_20744483_SNP [dm6]	C	G	4.617e^-4	0.414	SYNONYMOUS_CODING CG31200 UPSTREAM CG31199 INTRON CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16570211	3R_16570211_SNP [dm3] 3R_20744489_SNP [dm6]	T	G	4.617e^-4	0.414	SYNONYMOUS_CODING CG31200 UPSTREAM CG31199 INTRON CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25196526	3R_25196526_SNP [dm3] 3R_29370804_SNP [dm6]	A	C	4.623e^-4	0.414	INTERGENIC
2L	1789261	2L_1789261_SNP [dm3] 2L_1789261_SNP [dm6]	A	C	4.631e^-4	0.414	NON_SYNONYMOUS_CODING Gr22d
2L	9344266	2L_9344266_SNP [dm3] 2L_9344266_SNP [dm6]	T	C	4.643e^-4	0.414	SYNONYMOUS_CODING CG3748
2R	17527142	2R_17527142_SNP [dm3] 2R_21639637_SNP [dm6]	G	A	4.643e^-4	0.414	INTERGENIC
2R	9974008	2R_9974008_SNP [dm3] 2R_14086503_SNP [dm6]	G	A	4.643e^-4	0.414	INTRON Prosap
2R	9974076	2R_9974076_DEL [dm3] 2R_14086571_DEL [dm6]	TATC	T	4.643e^-4	0.414	INTRON Prosap
3L	8906204	3L_8906204_SNP [dm3] 3L_8913104_SNP [dm6]	C	A	4.643e^-4	0.414	UPSTREAM mfr INTRON Tsp66E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	11415917	2L_11415917_SNP [dm3] 2L_11415917_SNP [dm6]	G	T	4.663e^-4	0.414	INTERGENIC
2R	17879188	2R_17879188_SNP [dm3] 2R_21991683_SNP [dm6]	A	G	4.706e^-4	0.414	INTRON CG34370
3R	11443123	3R_11443123_SNP [dm3] 3R_15617401_SNP [dm6]	G	A	4.713e^-4	0.414	INTERGENIC
3R	22213638	3R_22213638_SNP [dm3] 3R_26387916_SNP [dm6]	C	T	4.728e^-4	0.414	INTERGENIC
X	15530431	X_15530431_SNP [dm3] X_15636398_SNP [dm6]	T	G	4.728e^-4	0.414	EXON CR44423
3L	9943884	3L_9943884_SNP [dm3] 3L_9950784_SNP [dm6]	G	A	4.777e^-4	0.414	INTRON CG34356
3L	9113072	3L_9113072_SNP [dm3] 3L_9119972_SNP [dm6]	A	G	4.781e^-4	0.414	INTRON bol
2L	15133865	2L_15133865_SNP [dm3] 2L_15133865_SNP [dm6]	G	A	4.786e^-4	0.414	INTERGENIC
2L	15134840	2L_15134840_SNP [dm3] 2L_15134840_SNP [dm6]	A	T	4.786e^-4	0.414	INTERGENIC
2L	15135058	2L_15135058_SNP [dm3] 2L_15135058_SNP [dm6]	A	C	4.786e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12623882	3L_12623882_SNP [dm3] 3L_12630782_SNP [dm6]	T	C	4.798e^-4	0.414	INTRON CR32111
2L	15080801	2L_15080801_SNP [dm3] 2L_15080801_SNP [dm6]	G	C	4.815e^-4	0.414	INTRON CG15270
2R	17904280	2R_17904280_SNP [dm3] 2R_22016775_SNP [dm6]	C	T	4.864e^-4	0.414	INTRON CG34370
3L	14167082	3L_14167082_SNP [dm3] 3L_14173982_SNP [dm6]	A	G	4.891e^-4	0.414	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14188073	3L_14188073_SNP [dm3] 3L_14194973_SNP [dm6]	T	C	4.891e^-4	0.414	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14524256	3L_14524256_SNP [dm3] 3L_14531156_SNP [dm6]	G	A	4.891e^-4	0.414	INTRON bbg
3L	14524264	3L_14524264_SNP [dm3] 3L_14531164_SNP [dm6]	A	T	4.891e^-4	0.414	INTRON bbg
3L	3127443	3L_3127443_SNP [dm3] 3L_3127443_SNP [dm6]	T	C	4.891e^-4	0.414	UPSTREAM prominin-like DOWNSTREAM CG11537 INTRON prominin-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3724466	3L_3724466_SNP [dm3] 3L_3724466_SNP [dm6]	G	T	4.891e^-4	0.414	INTRON CG32264
3L	3739725	3L_3739725_SNP [dm3] 3L_3739725_SNP [dm6]	A	C	4.891e^-4	0.414	INTRON CG32264
3L	3739738	3L_3739738_SNP [dm3] 3L_3739738_SNP [dm6]	A	C	4.891e^-4	0.414	INTRON CG32264
3L	4587320	3L_4587320_SNP [dm3] 3L_4587320_SNP [dm6]	C	T	4.891e^-4	0.414	INTRON CG42540
3L	5185834	3L_5185834_DEL [dm3] 3L_5192734_DEL [dm6]	AA	A	4.891e^-4	0.414	INTRON shep
3L	5586637	3L_5586637_SNP [dm3] 3L_5593537_SNP [dm6]	A	T	4.891e^-4	0.414	SYNONYMOUS_CODING CG10592 UPSTREAM spo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	9522843	3L_9522843_SNP [dm3] 3L_9529743_SNP [dm6]	T	A	4.891e^-4	0.414	INTRON Or67a
3R	12841412	3R_12841412_SNP [dm3] 3R_17015690_SNP [dm6]	A	G	4.891e^-4	0.414	UPSTREAM Pxd INTRON Pxd
3R	9866095	3R_9866095_SNP [dm3] 3R_14040373_SNP [dm6]	T	A	4.891e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10683960	3L_10683960_SNP [dm3] 3L_10690860_SNP [dm6]	A	G	4.898e^-4	0.414	UPSTREAM CG11811 DOWNSTREAM simj INTERGENIC
3L	10683967	3L_10683967_SNP [dm3] 3L_10690867_SNP [dm6]	G	A	4.898e^-4	0.414	UPSTREAM CG11811 DOWNSTREAM simj INTERGENIC
X	22338741	X_22338741_SNP [dm3] X_22936905_SNP [dm6]	T	C	4.908e^-4	0.414	INTERGENIC
2L	16728911	2L_16728911_SNP [dm3] 2L_16728911_SNP [dm6]	C	A	4.911e^-4	0.414	UPSTREAM CG31812 EXON CR43671	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	10016464	2L_10016464_SNP [dm3] 2L_10016464_SNP [dm6]	C	T	4.914e^-4	0.414	NON_SYNONYMOUS_CODING CG13131	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10016475	2L_10016475_SNP [dm3] 2L_10016475_SNP [dm6]	T	C	4.914e^-4	0.414	NON_SYNONYMOUS_CODING CG13131	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12200920	2L_12200920_SNP [dm3] 2L_12200920_SNP [dm6]	T	A	4.914e^-4	0.414	UPSTREAM aret INTRON aret
2L	12379311	2L_12379311_SNP [dm3] 2L_12379311_SNP [dm6]	A	T	4.914e^-4	0.414	INTRON bru-2
2L	13710552	2L_13710552_SNP [dm3] 2L_13710552_SNP [dm6]	T	A	4.914e^-4	0.414	UTR_3_PRIME CG7311 INTRON CG31814
2L	13710553	2L_13710553_SNP [dm3] 2L_13710553_SNP [dm6]	A	G	4.914e^-4	0.414	UTR_3_PRIME CG7311 INTRON CG31814
2L	6235851	2L_6235851_SNP [dm3] 2L_6235851_SNP [dm6]	G	C	4.914e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
2L	7142746	2L_7142746_SNP [dm3] 2L_7142746_SNP [dm6]	G	C	4.914e^-4	0.414	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	7398635	2L_7398635_SNP [dm3] 2L_7398635_SNP [dm6]	C	T	4.914e^-4	0.414	UTR_5_PRIME CG5160 UPSTREAM CR44079
3L	10524794	3L_10524794_SNP [dm3] 3L_10531694_SNP [dm6]	T	A	4.916e^-4	0.414	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl
X	952443	X_952443_SNP [dm3] X_1058410_SNP [dm6]	C	T	4.922e^-4	0.414	INTRON CR44779
2R	17915122	2R_17915122_SNP [dm3] 2R_22027617_SNP [dm6]	T	A	4.941e^-4	0.414	INTRON CG34370
2R	8624827	2R_8624827_SNP [dm3] 2R_12737322_SNP [dm6]	G	A	4.941e^-4	0.414	INTRON CG42663
3L	10623526	3L_10623526_SNP [dm3] 3L_10630426_SNP [dm6]	A	G	4.941e^-4	0.414	SYNONYMOUS_CODING CG42535 UPSTREAM CG42536 & 2 others	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_run
3R	16091277	3R_16091277_SNP [dm3] 3R_20265555_SNP [dm6]	T	A	4.941e^-4	0.414	INTRON cic
3R	16091284	3R_16091284_SNP [dm3] 3R_20265562_SNP [dm6]	G	T	4.941e^-4	0.414	INTRON cic
3R	16091314	3R_16091314_SNP [dm3] 3R_20265592_SNP [dm6]	A	T	4.941e^-4	0.414	INTRON cic
X	11570221	X_11570221_SNP [dm3] X_11676188_SNP [dm6]	A	T	4.941e^-4	0.414	UTR_3_PRIME Ptp10D	TF binding site mE1_TFBS_kn
2R	16062002	2R_16062002_SNP [dm3] 2R_20174497_SNP [dm6]	A	T	4.968e^-4	0.414	INTERGENIC
2R	16062077	2R_16062077_SNP [dm3] 2R_20174572_SNP [dm6]	T	C	4.968e^-4	0.414	INTERGENIC
2R	16062086	2R_16062086_DEL [dm3] 2R_20174581_DEL [dm6]	AATA	A	4.968e^-4	0.414	INTERGENIC
2R	16062099	2R_16062099_SNP [dm3] 2R_20174594_SNP [dm6]	T	A	4.968e^-4	0.414	INTERGENIC
2R	16062100	2R_16062100_SNP [dm3] 2R_20174595_SNP [dm6]	A	T	4.968e^-4	0.414	INTERGENIC
2R	16062106	2R_16062106_SNP [dm3] 2R_20174601_SNP [dm6]	A	T	4.968e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14703378	3R_14703378_SNP [dm3] 3R_18877656_SNP [dm6]	G	C	5.007e^-4	0.414	DOWNSTREAM CG14298 INTERGENIC
3R	4445308	3R_4445308_SNP [dm3] 3R_8619586_SNP [dm6]	A	G	5.007e^-4	0.414	INTRON 5-HT2B
3R	24768028	3R_24768028_SNP [dm3] 3R_28942306_SNP [dm6]	T	G	5.048e^-4	0.414	INTRON CG14521

By genomic position
Variant impact
Gene name

Makeham phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results