DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.426e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.07973

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

890 significant hits at p-value < 0.001.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	17722253	2R_17722253_SNP [dm3] 2R_21834748_SNP [dm6]	G	A	4.200e^-6	0.86	SYNONYMOUS_CODING CG4363 DOWNSTREAM CG4377
X	11111178	X_11111178_SNP [dm3] X_11217145_SNP [dm6]	T	C	1.225e^-5	0.86	INTERGENIC
2R	17436228	2R_17436228_SNP [dm3] 2R_21548723_SNP [dm6]	C	A	1.548e^-5	0.86	INTRON Egfr	TF binding site BDTNP1_TFBS_dl
2R	8911925	2R_8911925_SNP [dm3] 2R_13024420_SNP [dm6]	A	G	1.571e^-5	0.86	INTERGENIC
3L	18492202	3L_18492202_SNP [dm3] 3L_18499102_SNP [dm6]	G	A	1.571e^-5	0.86	INTRON AstC-R2
3L	9620585	3L_9620585_SNP [dm3] 3L_9627485_SNP [dm6]	A	T	1.860e^-5	0.86	DOWNSTREAM CG3335 INTRON Or67b
3L	9620726	3L_9620726_SNP [dm3] 3L_9627626_SNP [dm6]	C	T	2.050e^-5	0.86	NON_SYNONYMOUS_CODING Or67b DOWNSTREAM CG3335
3L	9620811	3L_9620811_SNP [dm3] 3L_9627711_SNP [dm6]	G	A	2.050e^-5	0.86	UPSTREAM CG8336 DOWNSTREAM CG3335 INTRON Or67b
3L	9620816	3L_9620816_SNP [dm3] 3L_9627716_SNP [dm6]	T	A	2.050e^-5	0.86	UPSTREAM CG8336 DOWNSTREAM CG3335 INTRON Or67b
3L	9621119	3L_9621119_SNP [dm3] 3L_9628019_SNP [dm6]	T	A	2.050e^-5	0.86	UPSTREAM CG8336 DOWNSTREAM CG3335 INTRON Or67b
3R	25356335	3R_25356335_SNP [dm3] 3R_29530613_SNP [dm6]	T	A	2.363e^-5	0.86	INTERGENIC
3L	9620493	3L_9620493_SNP [dm3] 3L_9627393_SNP [dm6]	C	A	2.524e^-5	0.86	UTR_3_PRIME Or67b DOWNSTREAM CG3335
3L	9621095	3L_9621095_SNP [dm3] 3L_9627995_SNP [dm6]	A	G	2.524e^-5	0.86	SYNONYMOUS_CODING Or67b UPSTREAM CG8336 DOWNSTREAM CG3335
3R	918518	3R_918518_SNP [dm3] 3R_5092796_SNP [dm6]	G	T	2.524e^-5	0.86	INTERGENIC
3R	24872160	3R_24872160_SNP [dm3] 3R_29046438_SNP [dm6]	A	C	2.996e^-5	0.86	UTR_3_PRIME Pkc98E
2R	5427749	2R_5427749_SNP [dm3] 2R_9540244_SNP [dm6]	G	A	3.053e^-5	0.86	UTR_3_PRIME brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11653566	2R_11653566_SNP [dm3] 2R_15766061_SNP [dm6]	T	G	3.183e^-5	0.86	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18375851	X_18375851_SNP [dm3] X_18481818_SNP [dm6]	C	T	4.192e^-5	0.86	SYNONYMOUS_CODING Hayan DOWNSTREAM CR45714 INTRON Hayan	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	11111129	X_11111129_SNP [dm3] X_11217096_SNP [dm6]	T	C	4.318e^-5	0.86	INTERGENIC
2R	11415155	2R_11415155_SNP [dm3] 2R_15527650_SNP [dm6]	C	T	4.507e^-5	0.86	SYNONYMOUS_CODING Khc-73	TF binding site BDTNP1_TFBS_dl
2R	11416422	2R_11416422_SNP [dm3] 2R_15528917_SNP [dm6]	T	C	4.507e^-5	0.86	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4978489	3L_4978489_SNP [dm3] 3L_4978489_SNP [dm6]	A	G	4.730e^-5	0.86	INTRON Con
2L	4794246	2L_4794246_SNP [dm3] 2L_4794246_SNP [dm6]	A	C	4.780e^-5	0.86	UPSTREAM CG3294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	21916487	2L_21916487_SNP [dm3] 2L_21916487_SNP [dm6]	T	A	4.839e^-5	0.86	NON_SYNONYMOUS_CODING CG11634
2R	17025724	2R_17025724_SNP [dm3] 2R_21138219_SNP [dm6]	G	C	5.211e^-5	0.86	SPLICE_SITE_REGION Magi INTRON Magi	TF binding site mE1_TFBS_chinmo
2R	8911929	2R_8911929_SNP [dm3] 2R_13024424_SNP [dm6]	C	A	5.308e^-5	0.86	INTERGENIC
3R	15327713	3R_15327713_SNP [dm3] 3R_19501991_SNP [dm6]	G	T	5.308e^-5	0.86	INTRON Dys
3R	18328932	3R_18328932_SNP [dm3] 3R_22503210_SNP [dm6]	T	A	5.308e^-5	0.86	INTRON Octbeta1R
3R	25265193	3R_25265193_SNP [dm3] 3R_29439471_SNP [dm6]	A	T	5.308e^-5	0.86	INTRON Ptp99A
3L	5820932	3L_5820932_SNP [dm3] 3L_5827832_SNP [dm6]	A	T	5.580e^-5	0.86	INTRON vn
3L	9620785	3L_9620785_SNP [dm3] 3L_9627685_SNP [dm6]	A	G	5.724e^-5	0.86	SPLICE_SITE_REGION Or67b UPSTREAM CG8336 DOWNSTREAM CG3335 INTRON Or67b
3L	4978443	3L_4978443_SNP [dm3] 3L_4978443_SNP [dm6]	T	G	5.910e^-5	0.86	INTRON Con
3L	14527380	3L_14527380_SNP [dm3] 3L_14534280_SNP [dm6]	G	C	5.952e^-5	0.86	INTRON bbg	TF binding site mE1_TFBS_Trl
2L	9011520	2L_9011520_SNP [dm3] 2L_9011520_SNP [dm6]	A	T	5.962e^-5	0.86	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	9011522	2L_9011522_DEL [dm3] 2L_9011522_DEL [dm6]	AAA	A	5.962e^-5	0.86	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	6566375	2L_6566375_SNP [dm3] 2L_6566375_SNP [dm6]	G	C	6.458e^-5	0.86	UPSTREAM CG13766 INTERGENIC
X	5575950	X_5575950_SNP [dm3] X_5681917_SNP [dm6]	A	C	6.924e^-5	0.86	SYNONYMOUS_CODING Gr5a EXON CR44958	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7189211	2L_7189211_SNP [dm3] 2L_7189211_SNP [dm6]	G	C	7.124e^-5	0.86	INTRON CG4496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	18704146	3R_18704146_SNP [dm3] 3R_22878424_SNP [dm6]	T	G	8.221e^-5	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17430732	2L_17430732_SNP [dm3] 2L_17430732_SNP [dm6]	G	A	8.342e^-5	0.86	DOWNSTREAM CR44409 INTRON Dif
X	11691832	X_11691832_INS [dm3] X_11797799_INS [dm6]	G	GA	8.577e^-5	0.86	UTR_3_PRIME CkIIbeta DOWNSTREAM CkIIbeta INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7956155	3L_7956155_SNP [dm3] 3L_7963055_SNP [dm6]	C	A	8.638e^-5	0.86	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6336150	2L_6336150_SNP [dm3] 2L_6336150_SNP [dm6]	A	G	8.647e^-5	0.86	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12323240	2L_12323240_SNP [dm3] 2L_12323240_SNP [dm6]	A	G	9.065e^-5	0.86	INTERGENIC
3L	1885006	3L_1885006_SNP [dm3] 3L_1885006_SNP [dm6]	G	T	9.456e^-5	0.86	UTR_5_PRIME Aprt UPSTREAM Tmhs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1885017	3L_1885017_SNP [dm3] 3L_1885017_SNP [dm6]	G	T	9.456e^-5	0.86	UTR_5_PRIME Aprt UPSTREAM Tmhs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1885018	3L_1885018_SNP [dm3] 3L_1885018_SNP [dm6]	G	T	9.456e^-5	0.86	UTR_5_PRIME Aprt UPSTREAM Tmhs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	20623215	3L_20623215_SNP [dm3] 3L_20630115_SNP [dm6]	T	C	9.456e^-5	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14939481	2R_14939481_SNP [dm3] 2R_19051976_SNP [dm6]	C	T	9.681e^-5	0.86	INTERGENIC
X	6388208	X_6388208_SNP [dm3] X_6494175_SNP [dm6]	G	A	9.681e^-5	0.86	INTRON CG42340
3R	20823341	3R_20823341_SNP [dm3] 3R_24997619_SNP [dm6]	G	A	9.856e^-5	0.86	INTRON tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20391131	X_20391131_SNP [dm3] X_20520104_SNP [dm6]	T	G	9.856e^-5	0.86	INTRON Tak1
X	8940282	X_8940282_SNP [dm3] X_9046249_SNP [dm6]	T	G	9.900e^-5	0.86	INTRON CR43836 & 1 other
3R	22890521	3R_22890521_DEL [dm3] 3R_27064799_DEL [dm6]	AA	C	9.911e^-5	0.86	UPSTREAM Nep5 & 1 other DOWNSTREAM spz INTERGENIC
X	9202607	X_9202607_SNP [dm3] X_9308574_SNP [dm6]	G	T	9.968e^-5	0.86	INTERGENIC
3L	12432091	3L_12432091_SNP [dm3] 3L_12438991_SNP [dm6]	G	A	1.021e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16185639	3L_16185639_SNP [dm3] 3L_16192539_SNP [dm6]	C	A	1.021e^-4	0.86	INTERGENIC
2R	5427731	2R_5427731_SNP [dm3] 2R_9540226_SNP [dm6]	G	T	1.041e^-4	0.86	UTR_3_PRIME brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1884972	3L_1884972_SNP [dm3] 3L_1884972_SNP [dm6]	C	T	1.049e^-4	0.86	UTR_5_PRIME Aprt UPSTREAM Tmhs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16190193	3L_16190193_SNP [dm3] 3L_16197093_SNP [dm6]	T	A	1.052e^-4	0.86	UPSTREAM CG33687 EXON CR45437
3R	921448	3R_921448_SNP [dm3] 3R_5095726_SNP [dm6]	A	G	1.071e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	9839233	3R_9839233_SNP [dm3] 3R_14013511_SNP [dm6]	A	C	1.084e^-4	0.86	INTRON rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4135877	2R_4135877_SNP [dm3] 2R_8248372_SNP [dm6]	A	C	1.134e^-4	0.86	DOWNSTREAM CG44439 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	4978279	3L_4978279_SNP [dm3] 3L_4978279_SNP [dm6]	C	T	1.146e^-4	0.86	INTRON Con
2L	7168682	2L_7168682_SNP [dm3] 2L_7168682_SNP [dm6]	A	C	1.147e^-4	0.86	INTERGENIC
2R	7403149	2R_7403149_SNP [dm3] 2R_11515644_SNP [dm6]	C	T	1.170e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13941266	3L_13941266_SNP [dm3] 3L_13948166_SNP [dm6]	G	T	1.170e^-4	0.86	INTRON CG32137
3L	8124936	3L_8124936_SNP [dm3] 3L_8131836_SNP [dm6]	T	C	1.170e^-4	0.86	SYNONYMOUS_CODING CG7504 DOWNSTREAM CdsA
3L	8124987	3L_8124987_SNP [dm3] 3L_8131887_SNP [dm6]	T	A	1.170e^-4	0.86	NON_SYNONYMOUS_CODING CG7504 DOWNSTREAM CdsA
2L	6559501	2L_6559501_SNP [dm3] 2L_6559501_SNP [dm6]	C	T	1.185e^-4	0.86	UTR_5_PRIME CG11043 UTR_3_PRIME CG9596 DOWNSTREAM CG9596 & 1 other	TF binding site mE1_TFBS_cad
2L	3750983	2L_3750983_SNP [dm3] 2L_3750983_SNP [dm6]	C	G	1.196e^-4	0.86	INTRON CG10019
3R	22848917	3R_22848917_SNP [dm3] 3R_27023195_SNP [dm6]	C	T	1.206e^-4	0.86	UTR_5_PRIME CG6277 INTRON RYa-R
3R	22848918	3R_22848918_SNP [dm3] 3R_27023196_SNP [dm6]	G	A	1.206e^-4	0.86	START_GAINED CG6277 UTR_5_PRIME CG6277 INTRON RYa-R
2L	6259241	2L_6259241_SNP [dm3] 2L_6259241_SNP [dm6]	G	A	1.212e^-4	0.86	INTRON Ddr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12050524	3L_12050524_SNP [dm3] 3L_12057424_SNP [dm6]	T	A	1.212e^-4	0.86	UPSTREAM rols INTRON rols	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	580737	2L_580737_SNP [dm3] 2L_580737_SNP [dm6]	C	T	1.237e^-4	0.86	INTERGENIC
2L	6340794	2L_6340794_INS [dm3] 2L_6340794_INS [dm6]	A	AA	1.237e^-4	0.86	UPSTREAM Cpr INTRON Cpr	TF binding site mE1_TFBS_cnc mE1_TFBS_zfh1
2L	6340799	2L_6340799_INS [dm3] 2L_6340799_INS [dm6]	T	TTGTTAGTTTT...	1.237e^-4	0.86	UPSTREAM Cpr INTRON Cpr	TF binding site mE1_TFBS_cnc mE1_TFBS_zfh1
2L	6340809	2L_6340809_SNP [dm3] 2L_6340809_SNP [dm6]	C	T	1.237e^-4	0.86	UPSTREAM Cpr INTRON Cpr	TF binding site mE1_TFBS_cnc mE1_TFBS_zfh1
3R	19804622	3R_19804622_SNP [dm3] 3R_23978900_SNP [dm6]	G	A	1.304e^-4	0.86	INTRON CG31140
3L	20616024	3L_20616024_SNP [dm3] 3L_20622924_SNP [dm6]	G	A	1.314e^-4	0.86	DOWNSTREAM CR44684 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	19614904	2L_19614904_SNP [dm3] 2L_19614904_SNP [dm6]	C	T	1.330e^-4	0.86	INTRON Lar
3L	3297604	3L_3297604_SNP [dm3] 3L_3297604_SNP [dm6]	C	T	1.335e^-4	0.86	SYNONYMOUS_CODING CG12009
2R	11844909	2R_11844909_SNP [dm3] 2R_15957404_SNP [dm6]	A	G	1.346e^-4	0.86	UPSTREAM Strn-Mlck DOWNSTREAM CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	11844926	2R_11844926_SNP [dm3] 2R_15957421_SNP [dm6]	T	C	1.346e^-4	0.86	UPSTREAM Strn-Mlck DOWNSTREAM CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	5444062	2R_5444062_SNP [dm3] 2R_9556557_SNP [dm6]	T	G	1.346e^-4	0.86	INTERGENIC
2R	15314362	2R_15314362_SNP [dm3] 2R_19426857_SNP [dm6]	T	A	1.351e^-4	0.86	INTRON CalpA
2R	8433622	2R_8433622_SNP [dm3] 2R_12546117_SNP [dm6]	C	A	1.351e^-4	0.86	INTRON fra & 1 other
3L	3671054	3L_3671054_SNP [dm3] 3L_3671054_SNP [dm6]	T	A	1.351e^-4	0.86	INTERGENIC
3L	7307032	3L_7307032_SNP [dm3] 3L_7313932_SNP [dm6]	G	A	1.351e^-4	0.86	INTERGENIC
3L	1409783	3L_1409783_SNP [dm3] 3L_1409783_SNP [dm6]	A	G	1.364e^-4	0.86	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13907150	2R_13907150_SNP [dm3] 2R_18019645_SNP [dm6]	A	C	1.370e^-4	0.86	SYNONYMOUS_CODING CG5084 UPSTREAM CG10910	TF binding site mE1_TFBS_cad
2R	10986649	2R_10986649_DEL [dm3] 2R_15099144_DEL [dm6]	CTATG	C	1.381e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	10986668	2R_10986668_SNP [dm3] 2R_15099163_SNP [dm6]	T	G	1.381e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	10986681	2R_10986681_INS [dm3] 2R_15099176_INS [dm6]	A	TCCTTAATTTCC...	1.381e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	10986689	2R_10986689_SNP [dm3] 2R_15099184_SNP [dm6]	A	T	1.381e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	10986690	2R_10986690_SNP [dm3] 2R_15099185_SNP [dm6]	A	T	1.381e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	16257560	3L_16257560_SNP [dm3] 3L_16264460_SNP [dm6]	G	T	1.401e^-4	0.86	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	11400179	3R_11400179_SNP [dm3] 3R_15574457_SNP [dm6]	C	T	1.411e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	10986730	2R_10986730_SNP [dm3] 2R_15099225_SNP [dm6]	A	T	1.445e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	8341020	3R_8341020_SNP [dm3] 3R_12515298_SNP [dm6]	G	A	1.445e^-4	0.86	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16376776	3L_16376776_SNP [dm3] 3L_16383676_SNP [dm6]	C	G	1.462e^-4	0.86	SYNONYMOUS_CODING CG4729 UPSTREAM CG4729
3L	4956936	3L_4956936_SNP [dm3] 3L_4956936_SNP [dm6]	C	A	1.462e^-4	0.86	INTRON Con
3L	12432084	3L_12432084_SNP [dm3] 3L_12438984_SNP [dm6]	A	T	1.492e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8334845	2R_8334845_SNP [dm3] 2R_12447340_SNP [dm6]	T	A	1.510e^-4	0.86	INTRON Dyb
2R	9353984	2R_9353984_SNP [dm3] 2R_13466479_SNP [dm6]	G	A	1.528e^-4	0.86	INTRON arr
2R	9353985	2R_9353985_SNP [dm3] 2R_13466480_SNP [dm6]	T	A	1.528e^-4	0.86	INTRON arr
X	12513579	X_12513579_INS [dm3] X_12619546_INS [dm6]	A	AAATTTAACCTAT...	1.532e^-4	0.86	INTRON CG11085
X	12513583	X_12513583_SNP [dm3] X_12619550_SNP [dm6]	G	T	1.532e^-4	0.86	INTRON CG11085
X	12513590	X_12513590_MNP [dm3] X_12619557_MNP [dm6]	GCC	TTT	1.532e^-4	0.86	INTRON CG11085
X	12513594	X_12513594_SNP [dm3] X_12619561_SNP [dm6]	A	T	1.532e^-4	0.86	INTRON CG11085
3R	26538524	3R_26538524_SNP [dm3] 3R_30712802_SNP [dm6]	C	T	1.545e^-4	0.86	INTERGENIC
2R	15843118	2R_15843118_SNP [dm3] 2R_19955613_SNP [dm6]	T	A	1.547e^-4	0.86	UPSTREAM CG44623 DOWNSTREAM CG44622 INTERGENIC
2R	7217150	2R_7217150_SNP [dm3] 2R_11329645_SNP [dm6]	T	G	1.547e^-4	0.86	INTRON sha	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7777775	3L_7777775_SNP [dm3] 3L_7784675_SNP [dm6]	T	A	1.547e^-4	0.86	INTRON CG32369
2L	7254663	2L_7254663_SNP [dm3] 2L_7254663_SNP [dm6]	G	T	1.566e^-4	0.86	DOWNSTREAM Wnt4 INTERGENIC
2R	6233279	2R_6233279_SNP [dm3] 2R_10345774_SNP [dm6]	C	T	1.593e^-4	0.86	INTRON CG42732
2R	6233283	2R_6233283_SNP [dm3] 2R_10345778_SNP [dm6]	C	A	1.593e^-4	0.86	INTRON CG42732
2R	14268854	2R_14268854_SNP [dm3] 2R_18381349_SNP [dm6]	T	C	1.638e^-4	0.86	DOWNSTREAM CG43202 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18234375	2L_18234375_SNP [dm3] 2L_18234375_SNP [dm6]	T	G	1.649e^-4	0.86	INTRON CG42750
2L	6336532	2L_6336532_SNP [dm3] 2L_6336532_SNP [dm6]	A	G	1.653e^-4	0.86	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11419011	2R_11419011_SNP [dm3] 2R_15531506_SNP [dm6]	A	G	1.656e^-4	0.86	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16188949	3L_16188949_SNP [dm3] 3L_16195849_SNP [dm6]	A	G	1.657e^-4	0.86	DOWNSTREAM CR45437 INTERGENIC
X	14829020	X_14829020_SNP [dm3] X_14934987_SNP [dm6]	G	C	1.659e^-4	0.86	SYNONYMOUS_CODING pdgy	TF binding site mE1_TFBS_sens
3L	3080579	3L_3080579_DEL [dm3] 3L_3080579_DEL [dm6]	ACGCGT	A	1.710e^-4	0.86	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	3080587	3L_3080587_SNP [dm3] 3L_3080587_SNP [dm6]	G	T	1.710e^-4	0.86	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	4978723	3L_4978723_SNP [dm3] 3L_4978723_SNP [dm6]	A	C	1.710e^-4	0.86	INTRON Con
3R	7089455	3R_7089455_SNP [dm3] 3R_11263733_SNP [dm6]	C	G	1.767e^-4	0.86	INTERGENIC
3L	2431992	3L_2431992_SNP [dm3] 3L_2431992_SNP [dm6]	G	A	1.787e^-4	0.86	INTRON CG45186
3L	2619676	3L_2619676_SNP [dm3] 3L_2619676_SNP [dm6]	C	T	1.787e^-4	0.86	INTRON Pxn
3L	3453265	3L_3453265_SNP [dm3] 3L_3453265_SNP [dm6]	G	T	1.787e^-4	0.86	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7254649	2L_7254649_SNP [dm3] 2L_7254649_SNP [dm6]	G	T	1.790e^-4	0.86	DOWNSTREAM Wnt4 INTERGENIC
2R	18315949	2R_18315949_SNP [dm3] 2R_22428444_SNP [dm6]	A	G	1.830e^-4	0.86	INTRON ppk12
2R	18315951	2R_18315951_SNP [dm3] 2R_22428446_SNP [dm6]	A	G	1.830e^-4	0.86	INTRON ppk12
2R	18315957	2R_18315957_SNP [dm3] 2R_22428452_SNP [dm6]	T	C	1.830e^-4	0.86	SPLICE_SITE_REGION ppk12 INTRON ppk12
2R	18316020	2R_18316020_SNP [dm3] 2R_22428515_SNP [dm6]	T	C	1.830e^-4	0.86	SYNONYMOUS_CODING ppk12
2R	14551369	2R_14551369_SNP [dm3] 2R_18663864_SNP [dm6]	T	C	1.832e^-4	0.86	DOWNSTREAM CG33136 INTERGENIC
2L	16234748	2L_16234748_SNP [dm3] 2L_16234748_SNP [dm6]	C	T	1.843e^-4	0.86	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16326392	3L_16326392_SNP [dm3] 3L_16333292_SNP [dm6]	G	A	1.873e^-4	0.86	UPSTREAM CG13056 DOWNSTREAM retinin INTERGENIC
3L	16326456	3L_16326456_SNP [dm3] 3L_16333356_SNP [dm6]	A	G	1.873e^-4	0.86	DOWNSTREAM retinin INTRON CG13056
3L	16326484	3L_16326484_DEL [dm3] 3L_16333384_DEL [dm6]	TTT	T	1.873e^-4	0.86	DOWNSTREAM retinin INTRON CG13056
3L	16326514	3L_16326514_INS [dm3] 3L_16333414_INS [dm6]	T	TA	1.873e^-4	0.86	DOWNSTREAM retinin INTRON CG13056
3L	16326518	3L_16326518_SNP [dm3] 3L_16333418_SNP [dm6]	T	A	1.873e^-4	0.86	NON_SYNONYMOUS_CODING CG13056 SPLICE_SITE_REGION CG13056 DOWNSTREAM retinin
3L	8913789	3L_8913789_SNP [dm3] 3L_8920689_SNP [dm6]	A	T	1.900e^-4	0.86	INTRON Tsp66E
X	3889775	X_3889775_SNP [dm3] X_3995742_SNP [dm6]	C	G	1.922e^-4	0.86	INTERGENIC
3R	7073079	3R_7073079_SNP [dm3] 3R_11247357_SNP [dm6]	G	A	1.986e^-4	0.86	DOWNSTREAM CR43283 & 1 other INTERGENIC
2L	18234340	2L_18234340_SNP [dm3] 2L_18234340_SNP [dm6]	T	C	2.022e^-4	0.86	INTRON CG42750
3L	3616586	3L_3616586_SNP [dm3] 3L_3616586_SNP [dm6]	A	G	2.033e^-4	0.86	UTR_3_PRIME CG10357	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	18217562	2L_18217562_SNP [dm3] 2L_18217562_SNP [dm6]	A	T	2.088e^-4	0.86	INTRON CG42750
2L	8496071	2L_8496071_SNP [dm3] 2L_8496071_SNP [dm6]	A	G	2.096e^-4	0.86	SYNONYMOUS_CODING Bace INTRON Dh31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8497308	2L_8497308_SNP [dm3] 2L_8497308_SNP [dm6]	C	T	2.096e^-4	0.86	INTRON Dh31
2L	8497327	2L_8497327_DEL [dm3] 2L_8497327_DEL [dm6]	AA	A	2.096e^-4	0.86	INTRON Dh31
2R	10986678	2R_10986678_SNP [dm3] 2R_15099173_SNP [dm6]	A	T	2.131e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	22269922	3R_22269922_SNP [dm3] 3R_26444200_SNP [dm6]	A	G	2.234e^-4	0.86	INTRON tx
2R	6228370	2R_6228370_SNP [dm3] 2R_10340865_SNP [dm6]	C	T	2.238e^-4	0.86	INTRON CG42732
2R	18898547	2R_18898547_SNP [dm3] 2R_23011024_SNP [dm6]	T	C	2.239e^-4	0.86	DOWNSTREAM CG42741 INTRON twi
3L	7416756	3L_7416756_SNP [dm3] 3L_7423656_SNP [dm6]	C	T	2.259e^-4	0.86	UPSTREAM CG42458 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5427803	2R_5427803_DEL [dm3] 2R_9540298_DEL [dm6]	TTATG	T	2.294e^-4	0.86	UTR_3_PRIME brp	TF binding site BDTNP1_TFBS_dl
2R	17612133	2R_17612133_SNP [dm3] 2R_21724628_SNP [dm6]	A	T	2.351e^-4	0.86	DOWNSTREAM LBR INTERGENIC
X	12513572	X_12513572_SNP [dm3] X_12619539_SNP [dm6]	T	G	2.354e^-4	0.86	INTRON CG11085
3R	25370839	3R_25370839_SNP [dm3] 3R_29545117_SNP [dm6]	G	A	2.400e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17389109	X_17389109_DEL [dm3] X_17495076_DEL [dm6]	AA	A	2.428e^-4	0.86	INTRON CG43658
3L	2651543	3L_2651543_SNP [dm3] 3L_2651543_SNP [dm6]	C	T	2.440e^-4	0.86	SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
3L	2651573	3L_2651573_SNP [dm3] 3L_2651573_SNP [dm6]	C	G	2.440e^-4	0.86	NON_SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
3L	2651650	3L_2651650_DEL [dm3] 3L_2651650_DEL [dm6]	CTC	C	2.440e^-4	0.86	UPSTREAM Snup & 1 other INTRON Aats-pro
3L	7398851	3L_7398851_SNP [dm3] 3L_7405751_SNP [dm6]	G	A	2.440e^-4	0.86	UPSTREAM pncr015:3L INTERGENIC
3L	7398970	3L_7398970_SNP [dm3] 3L_7405870_SNP [dm6]	C	T	2.440e^-4	0.86	UPSTREAM pncr015:3L INTERGENIC
3R	14788555	3R_14788555_SNP [dm3] 3R_18962833_SNP [dm6]	C	T	2.440e^-4	0.86	INTRON CG42613 & 1 other
3R	14788579	3R_14788579_SNP [dm3] 3R_18962857_SNP [dm6]	C	G	2.440e^-4	0.86	INTRON CG42613 & 1 other
X	19493229	X_19493229_SNP [dm3] X_19599196_SNP [dm6]	C	T	2.440e^-4	0.86	UTR_3_PRIME RpS10b DOWNSTREAM CG14220 & 1 other
X	12513570	X_12513570_SNP [dm3] X_12619537_SNP [dm6]	A	T	2.444e^-4	0.86	INTRON CG11085
X	12380878	X_12380878_SNP [dm3] X_12486845_SNP [dm6]	C	A	2.455e^-4	0.86	UPSTREAM Cpr11A INTERGENIC
X	12605560	X_12605560_SNP [dm3] X_12711527_SNP [dm6]	C	A	2.462e^-4	0.86	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_chinmo
2L	13912691	2L_13912691_SNP [dm3] 2L_13912691_SNP [dm6]	C	G	2.476e^-4	0.86	DOWNSTREAM Ance-2 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19905647	2R_19905647_SNP [dm3] 2R_24018124_SNP [dm6]	A	T	2.503e^-4	0.86	UPSTREAM CG4324 INTRON CG3121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	19973851	2R_19973851_SNP [dm3] 2R_24086328_SNP [dm6]	G	C	2.516e^-4	0.86	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	6572516	2L_6572516_SNP [dm3] 2L_6572516_SNP [dm6]	A	C	2.534e^-4	0.86	SYNONYMOUS_CODING CG11319 UTR_3_PRIME CG11319
2R	7765870	2R_7765870_SNP [dm3] 2R_11878365_SNP [dm6]	T	G	2.543e^-4	0.86	NON_SYNONYMOUS_CODING CG13185
3R	21339789	3R_21339789_SNP [dm3] 3R_25514067_SNP [dm6]	C	T	2.543e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6009400	3R_6009400_DEL [dm3] 3R_10183678_DEL [dm6]	CCCAAAAAGCCCTGGGCTTC...	C	2.543e^-4	0.86	INTRON CG12814
3R	6009461	3R_6009461_DEL [dm3] 3R_10183739_DEL [dm6]	GG	G	2.543e^-4	0.86	INTRON CG12814
3R	9839847	3R_9839847_SNP [dm3] 3R_14014125_SNP [dm6]	C	G	2.543e^-4	0.86	INTRON rdx	TF binding site BDTNP1_TFBS_dl
2R	13956042	2R_13956042_SNP [dm3] 2R_18068537_SNP [dm6]	G	A	2.555e^-4	0.86	INTRON CG34386
2R	5394327	2R_5394327_SNP [dm3] 2R_9506822_SNP [dm6]	C	T	2.587e^-4	0.86	INTRON brp
2R	10986742	2R_10986742_SNP [dm3] 2R_15099237_SNP [dm6]	G	A	2.644e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	580741	3L_580741_SNP [dm3] 3L_580741_SNP [dm6]	G	C	2.645e^-4	0.86	UTR_3_PRIME hipk UPSTREAM Ppm1
3R	11963755	3R_11963755_SNP [dm3] 3R_16138033_SNP [dm6]	G	C	2.645e^-4	0.86	INTRON Sb	TF binding site mE1_TFBS_inv
3R	11963785	3R_11963785_SNP [dm3] 3R_16138063_SNP [dm6]	T	C	2.645e^-4	0.86	INTRON Sb	TF binding site mE1_TFBS_inv
3R	11963825	3R_11963825_INS [dm3] 3R_16138103_INS [dm6]	G	GAATG	2.645e^-4	0.86	INTRON Sb	TF binding site mE1_TFBS_inv
3L	5166506	3L_5166506_SNP [dm3] 3L_5173406_SNP [dm6]	A	T	2.659e^-4	0.86	INTRON shep
3L	4956935	3L_4956935_SNP [dm3] 3L_4956935_SNP [dm6]	T	A	2.684e^-4	0.86	INTRON Con
3R	17741707	3R_17741707_SNP [dm3] 3R_21915985_SNP [dm6]	G	A	2.684e^-4	0.86	DOWNSTREAM CG17843 INTERGENIC
3R	21450201	3R_21450201_SNP [dm3] 3R_25624479_SNP [dm6]	G	C	2.684e^-4	0.86	UPSTREAM Npl4 DOWNSTREAM Ssadh INTRON Npl4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2L	14853251	2L_14853251_SNP [dm3] 2L_14853251_SNP [dm6]	T	A	2.688e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13251642	3L_13251642_SNP [dm3] 3L_13258542_SNP [dm6]	G	C	2.689e^-4	0.86	INTRON caps
3R	22894759	3R_22894759_SNP [dm3] 3R_27069037_SNP [dm6]	T	C	2.713e^-4	0.86	INTRON spz
3R	2078773	3R_2078773_SNP [dm3] 3R_6253051_SNP [dm6]	A	G	2.744e^-4	0.86	INTERGENIC
X	11084745	X_11084745_SNP [dm3] X_11190712_SNP [dm6]	G	C	2.746e^-4	0.86	INTERGENIC
2L	6567218	2L_6567218_SNP [dm3] 2L_6567218_SNP [dm6]	T	C	2.772e^-4	0.86	INTERGENIC
X	18873449	X_18873449_SNP [dm3] X_18979416_SNP [dm6]	G	T	2.809e^-4	0.86	INTRON CG43759	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	7530754	2R_7530754_SNP [dm3] 2R_11643249_SNP [dm6]	C	T	2.817e^-4	0.86	SYNONYMOUS_CODING CG9003
3R	22727094	3R_22727094_SNP [dm3] 3R_26901372_SNP [dm6]	G	C	2.841e^-4	0.86	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	17812630	3R_17812630_SNP [dm3] 3R_21986908_SNP [dm6]	T	C	2.862e^-4	0.86	INTRON Eip93F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19674926	2R_19674926_SNP [dm3] 2R_23787403_SNP [dm6]	G	A	2.863e^-4	0.86	INTRON CG9850
3L	7512907	3L_7512907_SNP [dm3] 3L_7519807_SNP [dm6]	G	A	2.863e^-4	0.86	SYNONYMOUS_CODING ltl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9724186	3L_9724186_SNP [dm3] 3L_9731086_SNP [dm6]	A	C	2.863e^-4	0.86	SYNONYMOUS_CODING ATPsyn-b DOWNSTREAM CG6749	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9726266	3L_9726266_SNP [dm3] 3L_9733166_SNP [dm6]	C	T	2.863e^-4	0.86	SYNONYMOUS_CODING CG6749 DOWNSTREAM mir-4986 & 1 other
3R	19056901	3R_19056901_SNP [dm3] 3R_23231179_SNP [dm6]	T	C	2.879e^-4	0.86	SYNONYMOUS_CODING CG4467
3R	19804632	3R_19804632_SNP [dm3] 3R_23978910_SNP [dm6]	A	T	2.879e^-4	0.86	INTRON CG31140
3L	14249402	3L_14249402_SNP [dm3] 3L_14256302_SNP [dm6]	A	T	2.895e^-4	0.86	INTERGENIC
2R	13748014	2R_13748014_SNP [dm3] 2R_17860509_SNP [dm6]	G	C	2.901e^-4	0.86	UTR_3_PRIME olf186-F UPSTREAM CG14490 DOWNSTREAM thr & 1 other
3R	25321020	3R_25321020_SNP [dm3] 3R_29495298_SNP [dm6]	G	T	2.902e^-4	0.86	INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	18234409	2L_18234409_SNP [dm3] 2L_18234409_SNP [dm6]	C	A	2.915e^-4	0.86	INTRON CG42750
3L	2431623	3L_2431623_SNP [dm3] 3L_2431623_SNP [dm6]	C	T	2.968e^-4	0.86	INTRON CG45186
3R	22746590	3R_22746590_SNP [dm3] 3R_26920868_SNP [dm6]	T	G	2.968e^-4	0.86	INTRON sda
2L	16234557	2L_16234557_SNP [dm3] 2L_16234557_SNP [dm6]	A	T	2.972e^-4	0.86	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16234623	2L_16234623_SNP [dm3] 2L_16234623_SNP [dm6]	T	A	2.982e^-4	0.86	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	814212	2L_814212_SNP [dm3] 2L_814212_SNP [dm6]	T	G	2.994e^-4	0.86	DOWNSTREAM Dbp21E2 INTRON Saf6
3L	16186168	3L_16186168_DEL [dm3] 3L_16193068_DEL [dm6]	CTCTCTCTATCTC...	C	3.003e^-4	0.86	INTERGENIC
3R	25321070	3R_25321070_SNP [dm3] 3R_29495348_SNP [dm6]	C	T	3.018e^-4	0.86	INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	16379228	2L_16379228_SNP [dm3] 2L_16379228_SNP [dm6]	G	A	3.049e^-4	0.86	INTERGENIC
2L	16379229	2L_16379229_SNP [dm3] 2L_16379229_SNP [dm6]	G	A	3.049e^-4	0.86	INTERGENIC
3R	25329046	3R_25329046_INS [dm3] 3R_29503324_INS [dm6]	C	CCCGCGAGTGT...	3.050e^-4	0.86	UTR_5_PRIME Trc8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12163946	2R_12163946_SNP [dm3] 2R_16276441_SNP [dm6]	T	C	3.055e^-4	0.86	NON_SYNONYMOUS_CODING CG33017
2R	12163992	2R_12163992_SNP [dm3] 2R_16276487_SNP [dm6]	T	A	3.055e^-4	0.86	SYNONYMOUS_CODING CG33017
2L	18181002	2L_18181002_SNP [dm3] 2L_18181002_SNP [dm6]	T	C	3.055e^-4	0.86	UTR_3_PRIME CG7180 INTRON CG42750
3R	9223321	3R_9223321_SNP [dm3] 3R_13397599_SNP [dm6]	G	A	3.058e^-4	0.86	UPSTREAM CG14377 & 1 other DOWNSTREAM CG9796 INTERGENIC
3L	17817910	3L_17817910_SNP [dm3] 3L_17824810_SNP [dm6]	A	G	3.060e^-4	0.86	INTRON Grd
2L	7063426	2L_7063426_SNP [dm3] 2L_7063426_SNP [dm6]	A	T	3.072e^-4	0.86	UTR_3_PRIME Mnn1 UPSTREAM Sem1 DOWNSTREAM Mnn1	TF binding site mE1_TFBS_cnc
2L	1547379	2L_1547379_SNP [dm3] 2L_1547379_SNP [dm6]	C	T	3.092e^-4	0.86	INTERGENIC
X	20584025	X_20584025_SNP [dm3] X_20712998_SNP [dm6]	G	A	3.110e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	20584070	X_20584070_SNP [dm3] X_20713043_SNP [dm6]	A	T	3.110e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	20584140	X_20584140_SNP [dm3] X_20713113_SNP [dm6]	G	T	3.110e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	434671	X_434671_SNP [dm3] X_540638_SNP [dm6]	T	G	3.110e^-4	0.86	INTRON Appl
2R	9518803	2R_9518803_SNP [dm3] 2R_13631298_SNP [dm6]	T	C	3.129e^-4	0.86	INTRON fas
3R	3625791	3R_3625791_SNP [dm3] 3R_7800069_SNP [dm6]	A	G	3.215e^-4	0.86	INTRON CG3014
3L	17813383	3L_17813383_DEL [dm3] 3L_17820283_DEL [dm6]	GG	G	3.229e^-4	0.86	UPSTREAM Ir75b DOWNSTREAM Ir75c INTERGENIC
3L	16326480	3L_16326480_SNP [dm3] 3L_16333380_SNP [dm6]	A	C	3.230e^-4	0.86	DOWNSTREAM retinin INTRON CG13056
X	12513573	X_12513573_SNP [dm3] X_12619540_SNP [dm6]	T	G	3.279e^-4	0.86	INTRON CG11085
X	12513597	X_12513597_INS [dm3] X_12619564_INS [dm6]	G	TGCATA	3.292e^-4	0.86	INTRON CG11085
2R	9444999	2R_9444999_SNP [dm3] 2R_13557494_SNP [dm6]	T	C	3.296e^-4	0.86	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4976908	3L_4976908_SNP [dm3] 3L_4976908_SNP [dm6]	G	C	3.301e^-4	0.86	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	18578065	3L_18578065_SNP [dm3] 3L_18584965_SNP [dm6]	A	G	3.303e^-4	0.86	DOWNSTREAM CR45435 INTERGENIC
3L	12069751	3L_12069751_SNP [dm3] 3L_12076651_SNP [dm6]	A	T	3.304e^-4	0.86	INTRON Sema-5c
2R	15042046	2R_15042046_SNP [dm3] 2R_19154541_SNP [dm6]	A	G	3.394e^-4	0.86	UPSTREAM ena INTRON ena	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_Trl
2R	16105647	2R_16105647_SNP [dm3] 2R_20218142_SNP [dm6]	A	C	3.394e^-4	0.86	INTERGENIC
3L	13907086	3L_13907086_SNP [dm3] 3L_13913986_SNP [dm6]	A	G	3.394e^-4	0.86	SYNONYMOUS_CODING Rgl INTRON Rgl
X	13992563	X_13992563_SNP [dm3] X_14098530_SNP [dm6]	T	A	3.394e^-4	0.86	INTERGENIC
X	2269104	X_2269104_SNP [dm3] X_2375071_SNP [dm6]	G	A	3.394e^-4	0.86	SYNONYMOUS_CODING PsGEF DOWNSTREAM PsGEF
3L	9730593	3L_9730593_DEL [dm3] 3L_9737493_DEL [dm6]	TTGTTTTTGGCTT...	T	3.463e^-4	0.86	INTRON CG42268	TF binding site BDTNP1_TFBS_dl
3L	2651570	3L_2651570_SNP [dm3] 3L_2651570_SNP [dm6]	T	A	3.477e^-4	0.86	SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
3L	16189021	3L_16189021_SNP [dm3] 3L_16195921_SNP [dm6]	G	A	3.515e^-4	0.86	DOWNSTREAM CR45437 INTERGENIC
2L	9031516	2L_9031516_SNP [dm3] 2L_9031516_SNP [dm6]	G	A	3.536e^-4	0.86	INTRON CG9582 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18224841	2L_18224841_SNP [dm3] 2L_18224841_SNP [dm6]	A	G	3.559e^-4	0.86	INTRON CG42750
2L	7071872	2L_7071872_INS [dm3] 2L_7071872_INS [dm6]	G	GG	3.562e^-4	0.86	INTRON Pvf2
2L	770261	2L_770261_SNP [dm3] 2L_770261_SNP [dm6]	C	T	3.600e^-4	0.86	INTERGENIC
X	19485846	X_19485846_SNP [dm3] X_19591813_SNP [dm6]	T	A	3.609e^-4	0.86	UPSTREAM CG14205 INTERGENIC
3R	12331869	3R_12331869_SNP [dm3] 3R_16506147_SNP [dm6]	G	A	3.617e^-4	0.86	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7765906	2R_7765906_SNP [dm3] 2R_11878401_SNP [dm6]	A	T	3.624e^-4	0.86	NON_SYNONYMOUS_CODING CG13185
2L	10322860	2L_10322860_SNP [dm3] 2L_10322860_SNP [dm6]	A	G	3.636e^-4	0.86	UPSTREAM CG4995 INTRON CG5381 & 1 other
3L	14334561	3L_14334561_SNP [dm3] 3L_14341461_SNP [dm6]	T	A	3.675e^-4	0.86	INTRON fz	TF binding site BDTNP1_TFBS_dl
3L	5658856	3L_5658856_SNP [dm3] 3L_5665756_SNP [dm6]	T	C	3.675e^-4	0.86	UTR_5_PRIME sif INTRON sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8805340	3L_8805340_SNP [dm3] 3L_8812240_SNP [dm6]	T	A	3.675e^-4	0.86	DOWNSTREAM CG13309 INTERGENIC
2R	6659719	2R_6659719_SNP [dm3] 2R_10772214_SNP [dm6]	C	T	3.695e^-4	0.86	INTRON CG33144	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3915277	X_3915277_SNP [dm3] X_4021244_SNP [dm6]	T	A	3.695e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	9721940	2L_9721940_SNP [dm3] 2L_9721940_SNP [dm6]	A	T	3.710e^-4	0.86	INTRON Nckx30C
3L	6926309	3L_6926309_SNP [dm3] 3L_6933209_SNP [dm6]	C	T	3.719e^-4	0.86	SYNONYMOUS_CODING CG14820
3L	3080558	3L_3080558_SNP [dm3] 3L_3080558_SNP [dm6]	A	G	3.724e^-4	0.86	INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	8706915	2L_8706915_SNP [dm3] 2L_8706915_SNP [dm6]	G	A	3.744e^-4	0.86	SYNONYMOUS_CODING CG9314 INTRON Hnf4
3R	1775505	3R_1775505_SNP [dm3] 3R_5949783_SNP [dm6]	T	C	3.756e^-4	0.86	INTRON CG34113
3R	19533175	3R_19533175_SNP [dm3] 3R_23707453_SNP [dm6]	T	C	3.780e^-4	0.86	UPSTREAM CR44052 INTRON CG31414
3R	19533176	3R_19533176_DEL [dm3] 3R_23707454_DEL [dm6]	CT	C	3.780e^-4	0.86	UPSTREAM CR44052 INTRON CG31414
2L	16199625	2L_16199625_SNP [dm3] 2L_16199625_SNP [dm6]	A	G	3.788e^-4	0.86	INTERGENIC
2L	16199626	2L_16199626_SNP [dm3] 2L_16199626_SNP [dm6]	G	T	3.788e^-4	0.86	INTERGENIC
3L	7147165	3L_7147165_SNP [dm3] 3L_7154065_SNP [dm6]	C	T	3.808e^-4	0.86	INTRON corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20340275	X_20340275_SNP [dm3] X_20469248_SNP [dm6]	C	T	3.808e^-4	0.86	NON_SYNONYMOUS_CODING GstT3 DOWNSTREAM RhoGAP19D	TF binding site mE1_TFBS_HSA
3R	11424771	3R_11424771_SNP [dm3] 3R_15599049_SNP [dm6]	A	T	3.842e^-4	0.86	INTERGENIC
3R	23211097	3R_23211097_SNP [dm3] 3R_27385375_SNP [dm6]	T	C	3.848e^-4	0.86	INTRON side
2R	7612908	2R_7612908_SNP [dm3] 2R_11725403_SNP [dm6]	G	A	3.854e^-4	0.86	SYNONYMOUS_CODING pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	15314361	2R_15314361_SNP [dm3] 2R_19426856_SNP [dm6]	T	C	3.867e^-4	0.86	INTRON CalpA
2R	19104977	2R_19104977_SNP [dm3] 2R_23217454_SNP [dm6]	T	C	3.911e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19574085	3R_19574085_SNP [dm3] 3R_23748363_SNP [dm6]	T	C	3.959e^-4	0.86	SYNONYMOUS_CODING Hmgcr	TF binding site mE1_TFBS_cad
3R	9958935	3R_9958935_SNP [dm3] 3R_14133213_SNP [dm6]	A	C	3.959e^-4	0.86	INTERGENIC
2R	11165022	2R_11165022_INS [dm3] 2R_15277517_INS [dm6]	A	AGAA	3.985e^-4	0.86	INTRON Trpm
3R	26369271	3R_26369271_SNP [dm3] 3R_30543549_SNP [dm6]	A	G	3.999e^-4	0.86	INTRON tmod	TF binding site BDTNP1_TFBS_twi
X	10764168	X_10764168_SNP [dm3] X_10870135_SNP [dm6]	C	T	4.000e^-4	0.86	DOWNSTREAM CG1637 INTRON CG2157	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10764436	X_10764436_SNP [dm3] X_10870403_SNP [dm6]	T	C	4.000e^-4	0.86	SYNONYMOUS_CODING CG2157 DOWNSTREAM CG1637
2L	770277	2L_770277_SNP [dm3] 2L_770277_SNP [dm6]	G	C	4.006e^-4	0.86	INTERGENIC
2L	770291	2L_770291_SNP [dm3] 2L_770291_SNP [dm6]	T	A	4.006e^-4	0.86	INTERGENIC
2L	770295	2L_770295_SNP [dm3] 2L_770295_SNP [dm6]	T	A	4.006e^-4	0.86	INTERGENIC
2R	7223452	2R_7223452_SNP [dm3] 2R_11335947_SNP [dm6]	T	C	4.039e^-4	0.86	SYNONYMOUS_CODING sha UPSTREAM lambdaTry	TF binding site mE1_TFBS_cad
3L	5427848	3L_5427848_SNP [dm3] 3L_5434748_SNP [dm6]	T	C	4.075e^-4	0.86	INTRON CG34391
2L	6140895	2L_6140895_SNP [dm3] 2L_6140895_SNP [dm6]	C	T	4.079e^-4	0.86	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6140901	2L_6140901_SNP [dm3] 2L_6140901_SNP [dm6]	G	T	4.079e^-4	0.86	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3783026	3L_3783026_SNP [dm3] 3L_3783026_SNP [dm6]	C	A	4.162e^-4	0.86	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	17431237	2L_17431237_SNP [dm3] 2L_17431237_SNP [dm6]	G	A	4.173e^-4	0.86	INTRON Dif
3R	16762461	3R_16762461_SNP [dm3] 3R_20936739_SNP [dm6]	G	C	4.181e^-4	0.86	INTRON CG31191
3R	9948317	3R_9948317_INS [dm3] 3R_14122595_INS [dm6]	T	TAATT	4.181e^-4	0.86	UPSTREAM twf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	8707405	2L_8707405_SNP [dm3] 2L_8707405_SNP [dm6]	C	T	4.181e^-4	0.86	UTR_3_PRIME CG9314 INTRON Hnf4
2L	8707417	2L_8707417_SNP [dm3] 2L_8707417_SNP [dm6]	G	A	4.181e^-4	0.86	UTR_3_PRIME CG9314 INTRON Hnf4
2L	8707443	2L_8707443_SNP [dm3] 2L_8707443_SNP [dm6]	C	T	4.181e^-4	0.86	UTR_3_PRIME CG9314 DOWNSTREAM CG9314 INTRON Hnf4
2L	8707444	2L_8707444_SNP [dm3] 2L_8707444_SNP [dm6]	T	C	4.181e^-4	0.86	UTR_3_PRIME CG9314 DOWNSTREAM CG9314 INTRON Hnf4
2L	9549125	2L_9549125_SNP [dm3] 2L_9549125_SNP [dm6]	T	C	4.209e^-4	0.86	UTR_3_PRIME jp
3L	10301679	3L_10301679_SNP [dm3] 3L_10308579_SNP [dm6]	T	G	4.209e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13968103	3L_13968103_SNP [dm3] 3L_13975003_SNP [dm6]	C	A	4.209e^-4	0.86	INTRON Hsc70-1
3L	17361245	3L_17361245_SNP [dm3] 3L_17368145_SNP [dm6]	T	G	4.209e^-4	0.86	UTR_3_PRIME Cad74A DOWNSTREAM CR45688
3L	17362587	3L_17362587_SNP [dm3] 3L_17369487_SNP [dm6]	A	G	4.209e^-4	0.86	NON_SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9739859	3L_9739859_SNP [dm3] 3L_9746759_SNP [dm6]	C	G	4.209e^-4	0.86	INTRON CG42268
3L	9739860	3L_9739860_SNP [dm3] 3L_9746760_SNP [dm6]	G	C	4.209e^-4	0.86	INTRON CG42268
3R	14707459	3R_14707459_INS [dm3] 3R_18881737_INS [dm6]	G	GGAACTCTT	4.209e^-4	0.86	INTERGENIC
3R	24833278	3R_24833278_SNP [dm3] 3R_29007556_SNP [dm6]	A	C	4.209e^-4	0.86	INTRON wat
3R	18704370	3R_18704370_SNP [dm3] 3R_22878648_SNP [dm6]	G	C	4.212e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11039110	3L_11039110_SNP [dm3] 3L_11046010_SNP [dm6]	A	G	4.238e^-4	0.86	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	11416270	2R_11416270_SNP [dm3] 2R_15528765_SNP [dm6]	G	T	4.276e^-4	0.86	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18811600	2L_18811600_SNP [dm3] 2L_18811600_SNP [dm6]	A	C	4.308e^-4	0.86	UPSTREAM CG10570 & 1 other INTERGENIC
2R	14148331	2R_14148331_SNP [dm3] 2R_18260826_SNP [dm6]	A	C	4.325e^-4	0.86	INTERGENIC
2R	9354046	2R_9354046_SNP [dm3] 2R_13466541_SNP [dm6]	T	G	4.328e^-4	0.86	INTRON arr
3L	4976903	3L_4976903_SNP [dm3] 3L_4976903_SNP [dm6]	T	A	4.339e^-4	0.86	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	4978603	3L_4978603_SNP [dm3] 3L_4978603_SNP [dm6]	A	G	4.341e^-4	0.86	INTRON Con
2L	6689467	2L_6689467_SNP [dm3] 2L_6689467_SNP [dm6]	T	C	4.368e^-4	0.86	UPSTREAM Tsp DOWNSTREAM Tsp INTRON Tsp
2L	6689478	2L_6689478_SNP [dm3] 2L_6689478_SNP [dm6]	A	G	4.368e^-4	0.86	UPSTREAM Tsp DOWNSTREAM Tsp INTRON Tsp
2L	14200352	2L_14200352_SNP [dm3] 2L_14200352_SNP [dm6]	T	C	4.371e^-4	0.86	INTRON Dyrk2
2L	15155029	2L_15155029_SNP [dm3] 2L_15155029_SNP [dm6]	C	T	4.411e^-4	0.86	INTERGENIC
2L	15155053	2L_15155053_SNP [dm3] 2L_15155053_SNP [dm6]	T	C	4.411e^-4	0.86	INTERGENIC
2R	17722295	2R_17722295_SNP [dm3] 2R_21834790_SNP [dm6]	C	A	4.429e^-4	0.86	DOWNSTREAM CG4377 INTRON CG4363
2R	17722308	2R_17722308_DEL [dm3] 2R_21834803_DEL [dm6]	TT	T	4.429e^-4	0.86	DOWNSTREAM CG4377 INTRON CG4363
2R	17722325	2R_17722325_SNP [dm3] 2R_21834820_SNP [dm6]	T	A	4.429e^-4	0.86	DOWNSTREAM CG4377 INTRON CG4363
2R	18318661	2R_18318661_DEL [dm3] 2R_22431156_DEL [dm6]	TACAG	T	4.429e^-4	0.86	INTERGENIC
2R	14966489	2R_14966489_SNP [dm3] 2R_19078984_SNP [dm6]	G	A	4.472e^-4	0.86	INTRON 5-HT1A
2R	14966534	2R_14966534_SNP [dm3] 2R_19079029_SNP [dm6]	G	T	4.472e^-4	0.86	INTRON 5-HT1A
2R	14966535	2R_14966535_SNP [dm3] 2R_19079030_SNP [dm6]	C	T	4.472e^-4	0.86	INTRON 5-HT1A
3L	4978921	3L_4978921_SNP [dm3] 3L_4978921_SNP [dm6]	G	C	4.477e^-4	0.86	INTRON Con	TF binding site BDTNP1_TFBS_da
3L	4979181	3L_4979181_INS [dm3] 3L_4979181_INS [dm6]	T	TGCAAATT	4.477e^-4	0.86	DOWNSTREAM CG17030 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4979184	3L_4979184_SNP [dm3] 3L_4979184_SNP [dm6]	C	T	4.477e^-4	0.86	DOWNSTREAM CG17030 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5057575	3L_5057575_SNP [dm3] 3L_5057575_SNP [dm6]	G	A	4.477e^-4	0.86	INTRON Con
2L	14852612	2L_14852612_SNP [dm3] 2L_14852612_SNP [dm6]	A	G	4.528e^-4	0.86	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_inv
2L	6336114	2L_6336114_SNP [dm3] 2L_6336114_SNP [dm6]	A	G	4.540e^-4	0.86	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6336195	2L_6336195_SNP [dm3] 2L_6336195_SNP [dm6]	T	C	4.540e^-4	0.86	NON_SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6659721	2R_6659721_SNP [dm3] 2R_10772216_SNP [dm6]	A	T	4.540e^-4	0.86	INTRON CG33144	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11845982	3L_11845982_SNP [dm3] 3L_11852882_SNP [dm6]	A	T	4.540e^-4	0.86	INTRON CG44837
3L	11845986	3L_11845986_SNP [dm3] 3L_11852886_SNP [dm6]	C	G	4.540e^-4	0.86	INTRON CG44837
X	3915282	X_3915282_SNP [dm3] X_4021249_SNP [dm6]	A	G	4.540e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	556211	3L_556211_SNP [dm3] 3L_556211_SNP [dm6]	T	C	4.569e^-4	0.86	INTRON hipk	TF binding site mE1_TFBS_inv
2L	18238633	2L_18238633_SNP [dm3] 2L_18238633_SNP [dm6]	A	T	4.577e^-4	0.86	INTRON CG42750
2L	6916598	2L_6916598_SNP [dm3] 2L_6916598_SNP [dm6]	G	A	4.595e^-4	0.86	UPSTREAM CG32829 DOWNSTREAM nop5 & 1 other INTRON x16
2R	10046440	2R_10046440_SNP [dm3] 2R_14158935_SNP [dm6]	C	A	4.595e^-4	0.86	NON_SYNONYMOUS_CODING CG13016 DOWNSTREAM CG8257
2R	17761828	2R_17761828_SNP [dm3] 2R_21874323_SNP [dm6]	T	A	4.595e^-4	0.86	INTRON Fili	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	10415182	X_10415182_SNP [dm3] X_10521149_SNP [dm6]	T	C	4.595e^-4	0.86	INTRON spri
X	18847395	X_18847395_SNP [dm3] X_18953362_SNP [dm6]	T	A	4.595e^-4	0.86	INTRON CG43759
X	18847600	X_18847600_SNP [dm3] X_18953567_SNP [dm6]	A	G	4.595e^-4	0.86	INTRON CG43759
3R	16328620	3R_16328620_SNP [dm3] 3R_20502898_SNP [dm6]	G	A	4.616e^-4	0.86	UPSTREAM Dic2 DOWNSTREAM MtnB INTERGENIC
X	9843937	X_9843937_SNP [dm3] X_9949904_SNP [dm6]	A	G	4.636e^-4	0.86	INTERGENIC
2L	7503936	2L_7503936_INS [dm3] 2L_7503936_INS [dm6]	T	TATTCAACTTAGTGGTC...	4.659e^-4	0.86	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3R	24627840	3R_24627840_SNP [dm3] 3R_28802118_SNP [dm6]	G	A	4.695e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11178175	2R_11178175_SNP [dm3] 2R_15290670_SNP [dm6]	T	G	4.753e^-4	0.86	INTRON Trpm
2R	11178177	2R_11178177_DEL [dm3] 2R_15290672_DEL [dm6]	TG	T	4.753e^-4	0.86	INTRON Trpm
X	2365253	X_2365253_SNP [dm3] X_2471220_SNP [dm6]	G	A	4.753e^-4	0.86	INTRON trol
2L	3165294	2L_3165294_INS [dm3] 2L_3165294_INS [dm6]	A	AA	4.761e^-4	0.86	INTRON Hydr2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3532136	2L_3532136_SNP [dm3] 2L_3532136_SNP [dm6]	A	G	4.761e^-4	0.86	INTRON Che-13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	6414429	2L_6414429_SNP [dm3] 2L_6414429_SNP [dm6]	A	G	4.761e^-4	0.86	UTR_3_PRIME CG13982 DOWNSTREAM Tig & 1 other
2L	6414431	2L_6414431_SNP [dm3] 2L_6414431_SNP [dm6]	T	A	4.761e^-4	0.86	UTR_3_PRIME CG13982 DOWNSTREAM Tig & 1 other
2L	7254675	2L_7254675_SNP [dm3] 2L_7254675_SNP [dm6]	A	C	4.761e^-4	0.86	DOWNSTREAM Wnt4 INTERGENIC
X	1868417	X_1868417_SNP [dm3] X_1974384_SNP [dm6]	G	A	4.773e^-4	0.86	INTRON Hr4	TF binding site mE1_TFBS_Trl
2L	10322880	2L_10322880_SNP [dm3] 2L_10322880_SNP [dm6]	T	C	4.778e^-4	0.86	UPSTREAM CG4995 INTRON CG5381 & 1 other
3L	2651668	3L_2651668_SNP [dm3] 3L_2651668_SNP [dm6]	G	C	4.825e^-4	0.86	SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
3R	14707357	3R_14707357_SNP [dm3] 3R_18881635_SNP [dm6]	T	G	4.838e^-4	0.86	INTERGENIC
2L	6336079	2L_6336079_SNP [dm3] 2L_6336079_SNP [dm6]	G	A	4.847e^-4	0.86	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6340870	2L_6340870_SNP [dm3] 2L_6340870_SNP [dm6]	T	C	4.847e^-4	0.86	UPSTREAM Cpr INTRON Cpr	TF binding site mE1_TFBS_cnc mE1_TFBS_zfh1
2L	4794140	2L_4794140_SNP [dm3] 2L_4794140_SNP [dm6]	G	A	4.855e^-4	0.86	UPSTREAM CG3294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7150939	3L_7150939_SNP [dm3] 3L_7157839_SNP [dm6]	G	T	4.873e^-4	0.86	UPSTREAM corn & 1 other INTERGENIC
X	9491280	X_9491280_SNP [dm3] X_9597247_SNP [dm6]	A	T	4.873e^-4	0.86	INTERGENIC
2L	766916	2L_766916_SNP [dm3] 2L_766916_SNP [dm6]	C	G	4.896e^-4	0.86	INTERGENIC
3L	9141603	3L_9141603_SNP [dm3] 3L_9148503_SNP [dm6]	G	T	4.907e^-4	0.86	UTR_3_PRIME Rdl DOWNSTREAM Rdl
3L	7784394	3L_7784394_SNP [dm3] 3L_7791294_SNP [dm6]	G	A	4.923e^-4	0.86	INTRON CG32369
3L	5908095	3L_5908095_SNP [dm3] 3L_5914995_SNP [dm6]	A	G	4.932e^-4	0.86	INTRON CG13288
2R	5395543	2R_5395543_SNP [dm3] 2R_9508038_SNP [dm6]	C	T	4.955e^-4	0.86	UTR_5_PRIME brp INTRON brp	TF binding site mE1_TFBS_Trl
3L	5427739	3L_5427739_SNP [dm3] 3L_5434639_SNP [dm6]	G	A	4.971e^-4	0.86	INTRON CG34391
X	19974406	X_19974406_SNP [dm3] X_20080373_SNP [dm6]	G	T	4.971e^-4	0.86	INTERGENIC
3R	11424705	3R_11424705_SNP [dm3] 3R_15598983_SNP [dm6]	T	G	5.000e^-4	0.86	INTERGENIC
3R	11424706	3R_11424706_SNP [dm3] 3R_15598984_SNP [dm6]	C	T	5.000e^-4	0.86	INTERGENIC
3R	11424710	3R_11424710_SNP [dm3] 3R_15598988_SNP [dm6]	G	T	5.000e^-4	0.86	INTERGENIC
2L	6697422	2L_6697422_SNP [dm3] 2L_6697422_SNP [dm6]	G	A	5.017e^-4	0.86	SYNONYMOUS_CODING Tsp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11354051	2L_11354051_SNP [dm3] 2L_11354051_SNP [dm6]	A	G	5.020e^-4	0.86	EXON CR44586	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11354055	2L_11354055_SNP [dm3] 2L_11354055_SNP [dm6]	T	A	5.020e^-4	0.86	EXON CR44586	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11354056	2L_11354056_SNP [dm3] 2L_11354056_SNP [dm6]	A	T	5.020e^-4	0.86	EXON CR44586	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2819145	2L_2819145_SNP [dm3] 2L_2819145_SNP [dm6]	A	G	5.022e^-4	0.86	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14996063	X_14996063_SNP [dm3] X_15102030_SNP [dm6]	T	C	5.087e^-4	0.86	SYNONYMOUS_CODING Rab3-GEF
3L	413912	3L_413912_SNP [dm3] 3L_413912_SNP [dm6]	C	T	5.100e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	9158074	3R_9158074_SNP [dm3] 3R_13332352_SNP [dm6]	T	C	5.116e^-4	0.86	UTR_5_PRIME PK2-R2
2R	8339597	2R_8339597_SNP [dm3] 2R_12452092_SNP [dm6]	G	A	5.119e^-4	0.86	UTR_3_PRIME Dyb DOWNSTREAM Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	721205	3L_721205_SNP [dm3] 3L_721205_SNP [dm6]	C	T	5.119e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	721259	3L_721259_SNP [dm3] 3L_721259_SNP [dm6]	A	T	5.119e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	721262	3L_721262_SNP [dm3] 3L_721262_SNP [dm6]	G	A	5.119e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	721272	3L_721272_SNP [dm3] 3L_721272_SNP [dm6]	T	A	5.119e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8503245	2L_8503245_SNP [dm3] 2L_8503245_SNP [dm6]	C	G	5.125e^-4	0.86	INTRON Dh31
2R	19349919	2R_19349919_SNP [dm3] 2R_23462396_SNP [dm6]	A	G	5.125e^-4	0.86	INTRON CG43795	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8924130	2R_8924130_SNP [dm3] 2R_13036625_SNP [dm6]	A	T	5.143e^-4	0.86	INTERGENIC
2L	3007061	2L_3007061_SNP [dm3] 2L_3007061_SNP [dm6]	A	G	5.150e^-4	0.86	INTRON CG17265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	3427607	2L_3427607_SNP [dm3] 2L_3427607_SNP [dm6]	T	C	5.150e^-4	0.86	UPSTREAM pgant2 INTERGENIC
X	19493314	X_19493314_SNP [dm3] X_19599281_SNP [dm6]	G	A	5.156e^-4	0.86	UTR_3_PRIME RpS10b DOWNSTREAM CG14220 & 1 other
3R	14788411	3R_14788411_DEL [dm3] 3R_18962689_DEL [dm6]	GG	C	5.166e^-4	0.86	INTRON CG42613 & 1 other
3L	11845972	3L_11845972_SNP [dm3] 3L_11852872_SNP [dm6]	T	C	5.238e^-4	0.86	INTRON CG44837
2L	3267561	2L_3267561_SNP [dm3] 2L_3267561_SNP [dm6]	A	T	5.269e^-4	0.86	UPSTREAM CR44484 INTERGENIC
3R	12934157	3R_12934157_SNP [dm3] 3R_17108435_SNP [dm6]	T	C	5.296e^-4	0.86	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22695703	3R_22695703_SNP [dm3] 3R_26869981_SNP [dm6]	T	C	5.296e^-4	0.86	SYNONYMOUS_CODING BM-40-SPARC DOWNSTREAM His2Av	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	22695757	3R_22695757_SNP [dm3] 3R_26870035_SNP [dm6]	T	C	5.296e^-4	0.86	SYNONYMOUS_CODING BM-40-SPARC DOWNSTREAM His2Av	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	24734907	3R_24734907_SNP [dm3] 3R_28909185_SNP [dm6]	T	A	5.296e^-4	0.86	SYNONYMOUS_CODING Doa UPSTREAM Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6747667	2L_6747667_SNP [dm3] 2L_6747667_SNP [dm6]	G	A	5.301e^-4	0.86	SYNONYMOUS_CODING CG44271 INTRON CG11221
2L	6747691	2L_6747691_SNP [dm3] 2L_6747691_SNP [dm6]	G	C	5.301e^-4	0.86	NON_SYNONYMOUS_CODING CG44271 INTRON CG11221
2L	8638175	2L_8638175_SNP [dm3] 2L_8638175_SNP [dm6]	A	G	5.301e^-4	0.86	INTRON Sema-1a
3R	27275018	3R_27275018_SNP [dm3] 3R_31449296_SNP [dm6]	G	T	5.311e^-4	0.86	INTRON Gprk2
3R	16428314	3R_16428314_SNP [dm3] 3R_20602592_SNP [dm6]	T	A	5.311e^-4	0.86	INTRON bon
2L	17464648	2L_17464648_SNP [dm3] 2L_17464648_SNP [dm6]	C	G	5.320e^-4	0.86	INTRON BicD
2L	18183080	2L_18183080_SNP [dm3] 2L_18183080_SNP [dm6]	C	T	5.328e^-4	0.86	SYNONYMOUS_CODING CG7180 INTRON CG42750
3R	24206356	3R_24206356_SNP [dm3] 3R_28380634_SNP [dm6]	C	A	5.330e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	7961290	2R_7961290_SNP [dm3] 2R_12073785_SNP [dm6]	G	T	5.344e^-4	0.86	INTRON CG8888
X	8940155	X_8940155_SNP [dm3] X_9046122_SNP [dm6]	T	C	5.362e^-4	0.86	INTRON CR43836 & 1 other
3L	10520198	3L_10520198_SNP [dm3] 3L_10527098_SNP [dm6]	G	A	5.366e^-4	0.86	INTRON A2bp1
X	3893708	X_3893708_SNP [dm3] X_3999675_SNP [dm6]	G	C	5.373e^-4	0.86	INTERGENIC
2R	18733261	2R_18733261_SNP [dm3] 2R_22845738_SNP [dm6]	G	A	5.381e^-4	0.86	UPSTREAM CG3649 INTERGENIC
3L	7962607	3L_7962607_SNP [dm3] 3L_7969507_SNP [dm6]	A	G	5.381e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	20269088	3L_20269088_SNP [dm3] 3L_20275988_SNP [dm6]	T	G	5.404e^-4	0.86	UPSTREAM CG17122 INTRON gogo	TF binding site mE1_TFBS_sbb
3L	8533471	3L_8533471_SNP [dm3] 3L_8540371_SNP [dm6]	C	T	5.404e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14707388	3R_14707388_SNP [dm3] 3R_18881666_SNP [dm6]	T	A	5.404e^-4	0.86	INTERGENIC
3R	14763970	3R_14763970_SNP [dm3] 3R_18938248_SNP [dm6]	T	C	5.404e^-4	0.86	INTRON CG42613
2R	10416114	2R_10416114_SNP [dm3] 2R_14528609_SNP [dm6]	G	A	5.406e^-4	0.86	INTRON ttv
X	19485682	X_19485682_SNP [dm3] X_19591649_SNP [dm6]	C	G	5.416e^-4	0.86	UPSTREAM CG14205 INTERGENIC
2L	7189320	2L_7189320_SNP [dm3] 2L_7189320_SNP [dm6]	G	A	5.420e^-4	0.86	INTRON CG4496	TF binding site BDTNP1_TFBS_dl
3L	9046291	3L_9046291_SNP [dm3] 3L_9053191_SNP [dm6]	C	T	5.431e^-4	0.86	INTRON Argk	TF binding site mE1_TFBS_HSA
3L	9255389	3L_9255389_SNP [dm3] 3L_9262289_SNP [dm6]	C	T	5.431e^-4	0.86	INTRON GluRIB	TF binding site BDTNP1_TFBS_twi
X	14072110	X_14072110_SNP [dm3] X_14178077_SNP [dm6]	T	A	5.431e^-4	0.86	UTR_3_PRIME CG11581 DOWNSTREAM CG11581
3R	24631767	3R_24631767_INS [dm3] 3R_28806045_INS [dm6]	T	TAATGTTTTT	5.443e^-4	0.86	UPSTREAM CheB98a INTERGENIC
3R	663683	3R_663683_SNP [dm3] 3R_4837961_SNP [dm6]	T	A	5.480e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	11963786	3R_11963786_SNP [dm3] 3R_16138064_SNP [dm6]	G	T	5.513e^-4	0.86	INTRON Sb	TF binding site mE1_TFBS_inv
3L	2445313	3L_2445313_SNP [dm3] 3L_2445313_SNP [dm6]	C	T	5.581e^-4	0.86	SYNONYMOUS_CODING CG45186	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7766019	2R_7766019_SNP [dm3] 2R_11878514_SNP [dm6]	C	G	5.587e^-4	0.86	INTRON CG13185
2L	5923065	2L_5923065_SNP [dm3] 2L_5923065_SNP [dm6]	A	G	5.617e^-4	0.86	UTR_3_PRIME CG9016 DOWNSTREAM bchs
3R	13464558	3R_13464558_SNP [dm3] 3R_17638836_SNP [dm6]	T	A	5.640e^-4	0.86	UPSTREAM CR45222 INTRON CG43175 & 1 other
2R	8515089	2R_8515089_SNP [dm3] 2R_12627584_SNP [dm6]	T	C	5.643e^-4	0.86	INTRON CG17760
3L	2683494	3L_2683494_SNP [dm3] 3L_2683494_SNP [dm6]	A	G	5.643e^-4	0.86	INTRON Fife
2L	18121706	2L_18121706_SNP [dm3] 2L_18121706_SNP [dm6]	C	A	5.650e^-4	0.86	UPSTREAM CG5758 INTRON CG5758
3L	6644230	3L_6644230_SNP [dm3] 3L_6651130_SNP [dm6]	G	C	5.675e^-4	0.86	INTERGENIC
2R	10986708	2R_10986708_SNP [dm3] 2R_15099203_SNP [dm6]	G	C	5.719e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	18269710	2L_18269710_SNP [dm3] 2L_18269710_SNP [dm6]	A	G	5.732e^-4	0.86	INTRON CG42750
3L	1119472	3L_1119472_SNP [dm3] 3L_1119472_SNP [dm6]	G	A	5.733e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_cad
X	20583831	X_20583831_SNP [dm3] X_20712804_SNP [dm6]	C	T	5.752e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Kr
X	20583840	X_20583840_SNP [dm3] X_20712813_SNP [dm6]	A	G	5.752e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Kr
X	20583848	X_20583848_INS [dm3] X_20712821_INS [dm6]	A	AAAAAGTTGGTAGTG...	5.752e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Kr
X	9214682	X_9214682_SNP [dm3] X_9320649_SNP [dm6]	G	A	5.777e^-4	0.86	SYNONYMOUS_CODING c12.2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	17902064	2R_17902064_SNP [dm3] 2R_22014559_SNP [dm6]	T	C	5.802e^-4	0.86	INTRON CG34370
3L	19514759	3L_19514759_SNP [dm3] 3L_19521659_SNP [dm6]	T	G	5.812e^-4	0.86	INTRON Cpr76Bc
3R	22081285	3R_22081285_SNP [dm3] 3R_26255563_SNP [dm6]	C	A	5.833e^-4	0.86	DOWNSTREAM Ald INTRON Ald
2L	6020172	2L_6020172_SNP [dm3] 2L_6020172_SNP [dm6]	A	G	5.834e^-4	0.86	UPSTREAM H2.0 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9723754	3L_9723754_SNP [dm3] 3L_9730654_SNP [dm6]	C	A	5.834e^-4	0.86	DOWNSTREAM CG6749 INTRON ATPsyn-b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9464224	3R_9464224_INS [dm3] 3R_13638502_INS [dm6]	A	AA	5.836e^-4	0.86	UTR_3_PRIME sqd INTRON sqd
X	18847461	X_18847461_SNP [dm3] X_18953428_SNP [dm6]	T	C	5.836e^-4	0.86	INTRON CG43759
2L	9424216	2L_9424216_SNP [dm3] 2L_9424216_SNP [dm6]	T	G	5.877e^-4	0.86	SYNONYMOUS_CODING Mco1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2651757	3L_2651757_SNP [dm3] 3L_2651757_SNP [dm6]	C	T	5.938e^-4	0.86	UTR_5_PRIME Aats-pro UPSTREAM Snup & 1 other
3L	2651761	3L_2651761_SNP [dm3] 3L_2651761_SNP [dm6]	A	T	5.938e^-4	0.86	UTR_5_PRIME Aats-pro UPSTREAM Snup & 1 other
3L	2651762	3L_2651762_SNP [dm3] 3L_2651762_SNP [dm6]	T	C	5.938e^-4	0.86	UTR_5_PRIME Aats-pro UPSTREAM Snup & 1 other
3L	2663223	3L_2663223_SNP [dm3] 3L_2663223_SNP [dm6]	T	C	5.938e^-4	0.86	SYNONYMOUS_CODING CG33234 INTRON Fife
3R	8284909	3R_8284909_SNP [dm3] 3R_12459187_SNP [dm6]	A	T	5.938e^-4	0.86	DOWNSTREAM trus INTRON CG5961	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8284945	3R_8284945_SNP [dm3] 3R_12459223_SNP [dm6]	C	T	5.938e^-4	0.86	SYNONYMOUS_CODING CG5961 DOWNSTREAM trus	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8285141	3R_8285141_SNP [dm3] 3R_12459419_SNP [dm6]	T	A	5.938e^-4	0.86	NON_SYNONYMOUS_CODING CG5961 UPSTREAM CG12267 DOWNSTREAM trus	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1869912	3L_1869912_SNP [dm3] 3L_1869912_SNP [dm6]	C	A	5.940e^-4	0.86	UPSTREAM CG13924 DOWNSTREAM CG12025 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6746050	3L_6746050_SNP [dm3] 3L_6752950_SNP [dm6]	A	C	5.940e^-4	0.86	UTR_5_PRIME CG8549 UPSTREAM CG8549 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
X	10696616	X_10696616_SNP [dm3] X_10802583_SNP [dm6]	C	A	5.940e^-4	0.86	INTRON Imp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	3028788	X_3028788_SNP [dm3] X_3134755_SNP [dm6]	C	T	5.940e^-4	0.86	UPSTREAM N DOWNSTREAM kirre INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_Trl
2R	14148260	2R_14148260_SNP [dm3] 2R_18260755_SNP [dm6]	G	A	5.940e^-4	0.86	INTERGENIC
2R	14148351	2R_14148351_SNP [dm3] 2R_18260846_SNP [dm6]	C	G	5.940e^-4	0.86	INTERGENIC
3L	6812342	3L_6812342_SNP [dm3] 3L_6819242_SNP [dm6]	C	G	5.940e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	6812351	3L_6812351_SNP [dm3] 3L_6819251_SNP [dm6]	T	G	5.940e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	6812354	3L_6812354_SNP [dm3] 3L_6819254_SNP [dm6]	G	T	5.940e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	6812388	3L_6812388_SNP [dm3] 3L_6819288_SNP [dm6]	A	T	5.940e^-4	0.86	INTERGENIC
3L	6812452	3L_6812452_INS [dm3] 3L_6819352_INS [dm6]	A	AA	5.940e^-4	0.86	INTERGENIC
3L	6812457	3L_6812457_SNP [dm3] 3L_6819357_SNP [dm6]	G	T	5.940e^-4	0.86	INTERGENIC
3L	6812472	3L_6812472_SNP [dm3] 3L_6819372_SNP [dm6]	C	T	5.940e^-4	0.86	INTERGENIC
3L	9868567	3L_9868567_SNP [dm3] 3L_9875467_SNP [dm6]	G	A	5.943e^-4	0.86	UPSTREAM CR45406 INTERGENIC
2R	16391675	2R_16391675_SNP [dm3] 2R_20504170_SNP [dm6]	A	T	5.944e^-4	0.86	NON_SYNONYMOUS_CODING Obp57c UPSTREAM Obp57b & 1 other	regulatory region REDfly_CRMs
X	5927706	X_5927706_SNP [dm3] X_6033673_SNP [dm6]	A	G	5.944e^-4	0.86	INTERGENIC
3L	15673321	3L_15673321_SNP [dm3] 3L_15680221_SNP [dm6]	A	C	5.968e^-4	0.86	NON_SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA
3L	15673342	3L_15673342_SNP [dm3] 3L_15680242_SNP [dm6]	C	T	5.968e^-4	0.86	NON_SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15673346	3L_15673346_SNP [dm3] 3L_15680246_SNP [dm6]	C	G	5.968e^-4	0.86	NON_SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15673355	3L_15673355_SNP [dm3] 3L_15680255_SNP [dm6]	G	A	5.968e^-4	0.86	NON_SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20587244	X_20587244_SNP [dm3] X_20716217_SNP [dm6]	G	A	5.978e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9517584	2L_9517584_SNP [dm3] 2L_9517584_SNP [dm6]	T	C	6.028e^-4	0.86	SYNONYMOUS_CODING CG33298
2L	13912611	2L_13912611_SNP [dm3] 2L_13912611_SNP [dm6]	G	A	6.051e^-4	0.86	UTR_3_PRIME Acyp DOWNSTREAM Ance-2 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17142266	2R_17142266_SNP [dm3] 2R_21254761_SNP [dm6]	A	G	6.055e^-4	0.86	UPSTREAM Rgk3 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7559920	2R_7559920_SNP [dm3] 2R_11672415_SNP [dm6]	G	C	6.055e^-4	0.86	INTRON Roc2 & 1 other	transposable element FlyBase
3L	1175990	3L_1175990_SNP [dm3] 3L_1175990_SNP [dm6]	G	A	6.055e^-4	0.86	INTRON bab2
3L	13365041	3L_13365041_SNP [dm3] 3L_13371941_SNP [dm6]	C	T	6.055e^-4	0.86	INTERGENIC
3L	14329504	3L_14329504_SNP [dm3] 3L_14336404_SNP [dm6]	G	A	6.055e^-4	0.86	INTRON fz
3L	5687836	3L_5687836_SNP [dm3] 3L_5694736_SNP [dm6]	A	T	6.055e^-4	0.86	INTRON sif
3R	20527142	3R_20527142_SNP [dm3] 3R_24701420_SNP [dm6]	T	C	6.055e^-4	0.86	INTRON slo
3R	21357190	3R_21357190_SNP [dm3] 3R_25531468_SNP [dm6]	A	T	6.055e^-4	0.86	INTRON msi
X	14261387	X_14261387_SNP [dm3] X_14367354_SNP [dm6]	A	C	6.055e^-4	0.86	INTRON dpr8
X	14263930	X_14263930_SNP [dm3] X_14369897_SNP [dm6]	T	A	6.055e^-4	0.86	INTRON dpr8
X	14263935	X_14263935_SNP [dm3] X_14369902_SNP [dm6]	C	T	6.055e^-4	0.86	INTRON dpr8
X	14263937	X_14263937_SNP [dm3] X_14369904_SNP [dm6]	T	A	6.055e^-4	0.86	INTRON dpr8
X	16748832	X_16748832_SNP [dm3] X_16854799_SNP [dm6]	G	T	6.055e^-4	0.86	INTRON CG13003
X	16748839	X_16748839_SNP [dm3] X_16854806_SNP [dm6]	G	A	6.055e^-4	0.86	INTRON CG13003
X	16748905	X_16748905_SNP [dm3] X_16854872_SNP [dm6]	C	T	6.055e^-4	0.86	INTRON CG13003
X	16748908	X_16748908_SNP [dm3] X_16854875_SNP [dm6]	G	A	6.055e^-4	0.86	INTRON CG13003
X	16748912	X_16748912_SNP [dm3] X_16854879_SNP [dm6]	G	A	6.055e^-4	0.86	INTRON CG13003
2R	16242489	2R_16242489_SNP [dm3] 2R_20354984_SNP [dm6]	C	T	6.082e^-4	0.86	NON_SYNONYMOUS_CODING CG11192	TF binding site mE1_TFBS_cad
3L	17818277	3L_17818277_SNP [dm3] 3L_17825177_SNP [dm6]	T	C	6.133e^-4	0.86	INTRON Grd
X	11656084	X_11656084_SNP [dm3] X_11762051_SNP [dm6]	G	T	6.136e^-4	0.86	INTRON m
2L	14852884	2L_14852884_SNP [dm3] 2L_14852884_SNP [dm6]	T	C	6.153e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18910196	3L_18910196_SNP [dm3] 3L_18917096_SNP [dm6]	G	A	6.154e^-4	0.86	UPSTREAM CG6839 INTERGENIC
2L	18217673	2L_18217673_SNP [dm3] 2L_18217673_SNP [dm6]	C	G	6.155e^-4	0.86	INTRON CG42750
2L	18220472	2L_18220472_SNP [dm3] 2L_18220472_SNP [dm6]	C	T	6.155e^-4	0.86	INTRON CG42750
2R	14604369	2R_14604369_SNP [dm3] 2R_18716864_SNP [dm6]	A	G	6.182e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14136737	2R_14136737_SNP [dm3] 2R_18249232_SNP [dm6]	C	A	6.185e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	10986721	2R_10986721_SNP [dm3] 2R_15099216_SNP [dm6]	T	G	6.208e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	20567004	3L_20567004_SNP [dm3] 3L_20573904_SNP [dm6]	C	G	6.215e^-4	0.86	INTERGENIC
2R	10200485	2R_10200485_SNP [dm3] 2R_14312980_SNP [dm6]	C	T	6.219e^-4	0.86	INTRON Shroom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15910629	2R_15910629_SNP [dm3] 2R_20023124_SNP [dm6]	A	G	6.219e^-4	0.86	INTERGENIC
3L	895376	3L_895376_SNP [dm3] 3L_895376_SNP [dm6]	C	T	6.259e^-4	0.86	UPSTREAM CG34056 DOWNSTREAM CG32479 INTERGENIC
3L	2431577	3L_2431577_SNP [dm3] 3L_2431577_SNP [dm6]	T	G	6.273e^-4	0.86	INTRON CG45186
3L	2431610	3L_2431610_SNP [dm3] 3L_2431610_SNP [dm6]	C	A	6.273e^-4	0.86	INTRON CG45186
2L	9424240	2L_9424240_SNP [dm3] 2L_9424240_SNP [dm6]	G	T	6.274e^-4	0.86	SYNONYMOUS_CODING Mco1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7962820	3L_7962820_SNP [dm3] 3L_7969720_SNP [dm6]	C	A	6.295e^-4	0.86	UPSTREAM RNaseX25 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16760692	3R_16760692_SNP [dm3] 3R_20934970_SNP [dm6]	A	G	6.295e^-4	0.86	INTRON CG31191
2L	4317499	2L_4317499_SNP [dm3] 2L_4317499_SNP [dm6]	A	C	6.297e^-4	0.86	INTRON tutl	TF binding site mE1_TFBS_HSA
2L	18284126	2L_18284126_SNP [dm3] 2L_18284126_SNP [dm6]	T	A	6.299e^-4	0.86	DOWNSTREAM CG31787 INTERGENIC
2L	6340842	2L_6340842_SNP [dm3] 2L_6340842_SNP [dm6]	A	C	6.299e^-4	0.86	UPSTREAM Cpr INTRON Cpr	TF binding site mE1_TFBS_cnc mE1_TFBS_zfh1
2L	6340844	2L_6340844_INS [dm3] 2L_6340844_INS [dm6]	T	TTCCACAGCTCAAAGATTTG...	6.299e^-4	0.86	UPSTREAM Cpr INTRON Cpr	TF binding site mE1_TFBS_cnc mE1_TFBS_zfh1
3L	13306005	3L_13306005_DEL [dm3] 3L_13312905_DEL [dm6]	TTTT	AA	6.311e^-4	0.86	INTERGENIC
2L	10322866	2L_10322866_SNP [dm3] 2L_10322866_SNP [dm6]	A	C	6.322e^-4	0.86	UPSTREAM CG4995 INTRON CG5381 & 1 other
3R	19199842	3R_19199842_SNP [dm3] 3R_23374120_SNP [dm6]	A	G	6.335e^-4	0.86	UTR_3_PRIME CG42828 DOWNSTREAM CG42827
3R	24719302	3R_24719302_SNP [dm3] 3R_28893580_SNP [dm6]	A	T	6.357e^-4	0.86	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo
3R	9388985	3R_9388985_SNP [dm3] 3R_13563263_SNP [dm6]	T	A	6.357e^-4	0.86	INTERGENIC
2L	2687943	2L_2687943_SNP [dm3] 2L_2687943_SNP [dm6]	G	T	6.364e^-4	0.86	INTRON CG31690
3L	11691050	3L_11691050_SNP [dm3] 3L_11697950_SNP [dm6]	C	A	6.366e^-4	0.86	SYNONYMOUS_CODING CG6053 UPSTREAM CG11652
X	10764172	X_10764172_SNP [dm3] X_10870139_SNP [dm6]	T	C	6.409e^-4	0.86	DOWNSTREAM CG1637 INTRON CG2157	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10764427	X_10764427_SNP [dm3] X_10870394_SNP [dm6]	A	G	6.409e^-4	0.86	SYNONYMOUS_CODING CG2157 DOWNSTREAM CG1637
3R	1924713	3R_1924713_SNP [dm3] 3R_6098991_SNP [dm6]	A	T	6.417e^-4	0.86	INTRON Gasp	TF binding site BDTNP1_TFBS_prd
2R	11489399	2R_11489399_SNP [dm3] 2R_15601894_SNP [dm6]	T	C	6.418e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_inv
X	12641414	X_12641414_SNP [dm3] X_12747381_SNP [dm6]	C	T	6.428e^-4	0.86	SYNONYMOUS_CODING CG4004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	12034713	2L_12034713_SNP [dm3] 2L_12034713_SNP [dm6]	C	T	6.446e^-4	0.86	SYNONYMOUS_CODING CG18788 DOWNSTREAM dmGlut	TF binding site mE1_TFBS_chinmo
2L	12801616	2L_12801616_SNP [dm3] 2L_12801616_SNP [dm6]	T	C	6.446e^-4	0.86	INTERGENIC
2L	18805390	2L_18805390_SNP [dm3] 2L_18805390_SNP [dm6]	G	A	6.446e^-4	0.86	UPSTREAM CG43814 DOWNSTREAM CR43817 INTERGENIC
2L	6414464	2L_6414464_SNP [dm3] 2L_6414464_SNP [dm6]	G	T	6.446e^-4	0.86	UTR_3_PRIME CG13982 DOWNSTREAM Tig & 1 other
2L	6414465	2L_6414465_SNP [dm3] 2L_6414465_SNP [dm6]	T	C	6.446e^-4	0.86	UTR_3_PRIME CG13982 DOWNSTREAM Tig & 1 other
2R	14604381	2R_14604381_SNP [dm3] 2R_18716876_SNP [dm6]	G	A	6.483e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14604394	2R_14604394_SNP [dm3] 2R_18716889_SNP [dm6]	A	T	6.483e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6434107	X_6434107_SNP [dm3] X_6540074_SNP [dm6]	A	G	6.483e^-4	0.86	UPSTREAM CG34417 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6434109	X_6434109_SNP [dm3] X_6540076_SNP [dm6]	G	A	6.483e^-4	0.86	UPSTREAM CG34417 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6434120	X_6434120_SNP [dm3] X_6540087_SNP [dm6]	A	G	6.483e^-4	0.86	UPSTREAM CG34417 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	7905397	X_7905397_SNP [dm3] X_8011364_SNP [dm6]	A	T	6.483e^-4	0.86	INTRON Tbh
2L	18230035	2L_18230035_SNP [dm3] 2L_18230035_SNP [dm6]	A	C	6.494e^-4	0.86	INTRON CG42750
2L	18231118	2L_18231118_SNP [dm3] 2L_18231118_SNP [dm6]	T	C	6.494e^-4	0.86	INTRON CG42750
3L	2445295	3L_2445295_SNP [dm3] 3L_2445295_SNP [dm6]	C	T	6.508e^-4	0.86	SYNONYMOUS_CODING CG45186	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15117350	3L_15117350_SNP [dm3] 3L_15124250_SNP [dm6]	G	A	6.509e^-4	0.86	UTR_5_PRIME CG16959 INTRON Cep135 & 1 other
3R	9386627	3R_9386627_SNP [dm3] 3R_13560905_SNP [dm6]	T	A	6.522e^-4	0.86	INTERGENIC
2R	11423960	2R_11423960_SNP [dm3] 2R_15536455_SNP [dm6]	T	A	6.538e^-4	0.86	INTRON CG30471
3R	19804353	3R_19804353_SNP [dm3] 3R_23978631_SNP [dm6]	T	A	6.583e^-4	0.86	INTRON CG31140
3R	22822545	3R_22822545_SNP [dm3] 3R_26996823_SNP [dm6]	C	T	6.583e^-4	0.86	UPSTREAM RYa-R DOWNSTREAM TwdlC INTERGENIC
3L	7513517	3L_7513517_SNP [dm3] 3L_7520417_SNP [dm6]	A	C	6.586e^-4	0.86	INTRON ltl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	17736514	X_17736514_SNP [dm3] X_17842481_SNP [dm6]	A	C	6.586e^-4	0.86	SYNONYMOUS_CODING e_y_1 DOWNSTREAM CG6398 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17736541	X_17736541_SNP [dm3] X_17842508_SNP [dm6]	G	A	6.586e^-4	0.86	SYNONYMOUS_CODING e_y_1 DOWNSTREAM CG6398 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6919679	2L_6919679_SNP [dm3] 2L_6919679_SNP [dm6]	A	G	6.609e^-4	0.86	SYNONYMOUS_CODING x16 UPSTREAM nop5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	14906529	2L_14906529_SNP [dm3] 2L_14906529_SNP [dm6]	G	T	6.619e^-4	0.86	DOWNSTREAM CG42313 INTERGENIC
3L	19336947	3L_19336947_SNP [dm3] 3L_19343847_SNP [dm6]	T	G	6.640e^-4	0.86	INTRON CG32206
3L	19336948	3L_19336948_SNP [dm3] 3L_19343848_SNP [dm6]	G	T	6.640e^-4	0.86	INTRON CG32206
2L	11310403	2L_11310403_DEL [dm3] 2L_11310403_DEL [dm6]	CATTAAT	C	6.643e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_inv
2R	7461706	2R_7461706_SNP [dm3] 2R_11574201_SNP [dm6]	G	A	6.648e^-4	0.86	INTERGENIC
3R	25168923	3R_25168923_SNP [dm3] 3R_29343201_SNP [dm6]	A	T	6.676e^-4	0.86	INTERGENIC
3L	7784440	3L_7784440_SNP [dm3] 3L_7791340_SNP [dm6]	C	T	6.686e^-4	0.86	INTRON CG32369
2R	13906625	2R_13906625_SNP [dm3] 2R_18019120_SNP [dm6]	T	G	6.722e^-4	0.86	SYNONYMOUS_CODING CG5084	TF binding site mE1_TFBS_cad
X	22146811	X_22146811_SNP [dm3] X_22744975_SNP [dm6]	C	T	6.738e^-4	0.86	INTRON CR44997
3R	26363736	3R_26363736_SNP [dm3] 3R_30538014_SNP [dm6]	T	G	6.763e^-4	0.86	UPSTREAM tmod INTRON tmod
3R	15319227	3R_15319227_SNP [dm3] 3R_19493505_SNP [dm6]	T	A	6.785e^-4	0.86	INTRON Dys
2R	12372233	2R_12372233_SNP [dm3] 2R_16484728_SNP [dm6]	G	A	6.812e^-4	0.86	DOWNSTREAM CG15712 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12069501	3L_12069501_SNP [dm3] 3L_12076401_SNP [dm6]	A	T	6.812e^-4	0.86	INTRON Sema-5c
3L	12069549	3L_12069549_SNP [dm3] 3L_12076449_SNP [dm6]	G	A	6.812e^-4	0.86	INTRON Sema-5c
3L	12069557	3L_12069557_SNP [dm3] 3L_12076457_SNP [dm6]	A	G	6.812e^-4	0.86	INTRON Sema-5c
3L	13137480	3L_13137480_SNP [dm3] 3L_13144380_SNP [dm6]	A	G	6.812e^-4	0.86	INTERGENIC
3L	6665147	3L_6665147_SNP [dm3] 3L_6672047_SNP [dm6]	T	G	6.812e^-4	0.86	INTERGENIC
2L	7636870	2L_7636870_SNP [dm3] 2L_7636870_SNP [dm6]	A	G	6.814e^-4	0.86	UPSTREAM CR44800 DOWNSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12845300	3L_12845300_SNP [dm3] 3L_12852200_SNP [dm6]	A	T	6.814e^-4	0.86	DOWNSTREAM Wbp2 INTRON Wbp2
X	5575926	X_5575926_SNP [dm3] X_5681893_SNP [dm6]	C	T	6.821e^-4	0.86	SYNONYMOUS_CODING Gr5a EXON CR44958	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10985713	2R_10985713_SNP [dm3] 2R_15098208_SNP [dm6]	C	G	6.822e^-4	0.86	INTERGENIC
2R	17730906	2R_17730906_DEL [dm3] 2R_21843401_DEL [dm6]	CTTTTGTATGG...	C	6.822e^-4	0.86	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17730918	2R_17730918_DEL [dm3] 2R_21843413_DEL [dm6]	CGA	C	6.822e^-4	0.86	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18003922	2R_18003922_SNP [dm3] 2R_22116417_SNP [dm6]	C	A	6.822e^-4	0.86	UPSTREAM Vrp1 DOWNSTREAM CG30281 INTRON Vrp1
3L	756443	3L_756443_SNP [dm3] 3L_756443_SNP [dm6]	A	G	6.822e^-4	0.86	UPSTREAM hng3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1837087	2R_1837087_SNP [dm3] 2R_5949582_SNP [dm6]	C	G	6.823e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17318589	2R_17318589_SNP [dm3] 2R_21431084_SNP [dm6]	T	C	6.838e^-4	0.86	INTRON Sdc
3R	18869750	3R_18869750_SNP [dm3] 3R_23044028_SNP [dm6]	C	T	6.863e^-4	0.86	SYNONYMOUS_CODING CG13837 DOWNSTREAM CG17121	TF binding site BDTNP1_TFBS_twi
2L	2856657	2L_2856657_SNP [dm3] 2L_2856657_SNP [dm6]	G	C	6.864e^-4	0.86	UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	18286524	2L_18286524_SNP [dm3] 2L_18286524_SNP [dm6]	T	G	6.882e^-4	0.86	UPSTREAM CG31787 INTERGENIC
2L	18286555	2L_18286555_SNP [dm3] 2L_18286555_SNP [dm6]	G	T	6.882e^-4	0.86	UPSTREAM CG31787 INTERGENIC
3R	12386818	3R_12386818_SNP [dm3] 3R_16561096_SNP [dm6]	T	C	6.883e^-4	0.86	INTRON CG42342
3R	25168907	3R_25168907_SNP [dm3] 3R_29343185_SNP [dm6]	G	A	6.883e^-4	0.86	INTERGENIC
3R	3621128	3R_3621128_SNP [dm3] 3R_7795406_SNP [dm6]	C	T	6.883e^-4	0.86	INTRON CG2641
2L	12141282	2L_12141282_SNP [dm3] 2L_12141282_SNP [dm6]	T	G	6.900e^-4	0.86	DOWNSTREAM Gr33a INTERGENIC
3L	7265352	3L_7265352_SNP [dm3] 3L_7272252_SNP [dm6]	A	G	6.949e^-4	0.86	INTRON unc-13-4A	TF binding site mE1_TFBS_cad
3R	17067574	3R_17067574_SNP [dm3] 3R_21241852_SNP [dm6]	C	T	6.970e^-4	0.86	UPSTREAM CG5892 INTERGENIC	regulatory region REDfly_CRMs
3R	6977574	3R_6977574_SNP [dm3] 3R_11151852_SNP [dm6]	C	A	6.970e^-4	0.86	UTR_3_PRIME Ugt86Di DOWNSTREAM Ugt86Di
3R	26363769	3R_26363769_SNP [dm3] 3R_30538047_SNP [dm6]	C	A	6.994e^-4	0.86	UPSTREAM tmod INTRON tmod
2R	5304956	2R_5304956_SNP [dm3] 2R_9417451_SNP [dm6]	T	C	6.998e^-4	0.86	SYNONYMOUS_CODING wun2
2L	4316403	2L_4316403_SNP [dm3] 2L_4316403_SNP [dm6]	A	T	7.037e^-4	0.86	DOWNSTREAM tutl INTRON tutl
3L	12867573	3L_12867573_SNP [dm3] 3L_12874473_SNP [dm6]	C	A	7.042e^-4	0.86	INTERGENIC
3R	11424701	3R_11424701_SNP [dm3] 3R_15598979_SNP [dm6]	T	G	7.046e^-4	0.86	INTERGENIC
2L	20091029	2L_20091029_SNP [dm3] 2L_20091029_SNP [dm6]	A	G	7.069e^-4	0.86	SYNONYMOUS_CODING CG10747 UPSTREAM CG10721	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	4008017	X_4008017_SNP [dm3] X_4113984_SNP [dm6]	C	T	7.078e^-4	0.86	UPSTREAM dgt4 & 1 other DOWNSTREAM Tip60 INTRON dgt4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	4008048	X_4008048_SNP [dm3] X_4114015_SNP [dm6]	C	T	7.078e^-4	0.86	UPSTREAM dgt4 & 1 other DOWNSTREAM Tip60 INTRON dgt4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11235955	3L_11235955_SNP [dm3] 3L_11242855_SNP [dm6]	T	C	7.084e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19218559	3L_19218559_SNP [dm3] 3L_19225459_SNP [dm6]	C	T	7.091e^-4	0.86	INTRON fz2
3R	26371018	3R_26371018_SNP [dm3] 3R_30545296_SNP [dm6]	C	T	7.092e^-4	0.86	INTRON tmod
2L	18308062	2L_18308062_SNP [dm3] 2L_18308062_SNP [dm6]	A	G	7.139e^-4	0.86	DOWNSTREAM CR43353 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	3606694	3L_3606694_SNP [dm3] 3L_3606694_SNP [dm6]	A	G	7.147e^-4	0.86	INTRON Eip63E
2R	6709380	2R_6709380_SNP [dm3] 2R_10821875_SNP [dm6]	C	A	7.147e^-4	0.86	SYNONYMOUS_CODING RpS15Ab UPSTREAM Lsm10 DOWNSTREAM Prosbeta5 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1722715	2L_1722715_SNP [dm3] 2L_1722715_SNP [dm6]	C	T	7.181e^-4	0.86	INTRON Rim2
X	7924257	X_7924257_SNP [dm3] X_8030224_SNP [dm6]	A	G	7.213e^-4	0.86	INTERGENIC
2L	6557719	2L_6557719_SNP [dm3] 2L_6557719_SNP [dm6]	C	A	7.254e^-4	0.86	UPSTREAM CoVb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
X	5679633	X_5679633_SNP [dm3] X_5785600_SNP [dm6]	G	A	7.309e^-4	0.86	NON_SYNONYMOUS_CODING CG42699	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5679634	X_5679634_SNP [dm3] X_5785601_SNP [dm6]	C	T	7.309e^-4	0.86	SYNONYMOUS_CODING CG42699	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5679736	X_5679736_SNP [dm3] X_5785703_SNP [dm6]	T	A	7.309e^-4	0.86	SYNONYMOUS_CODING CG42699	TF binding site mE1_TFBS_chinmo
2R	4957966	2R_4957966_SNP [dm3] 2R_9070461_SNP [dm6]	G	A	7.317e^-4	0.86	INTRON ana	TF binding site BDTNP1_TFBS_Med
X	18866617	X_18866617_SNP [dm3] X_18972584_SNP [dm6]	G	A	7.317e^-4	0.86	INTRON CG43759
3L	937154	3L_937154_SNP [dm3] 3L_937154_SNP [dm6]	A	G	7.355e^-4	0.86	INTRON Glut1
2L	6559264	2L_6559264_INS [dm3] 2L_6559264_INS [dm6]	A	AT	7.406e^-4	0.86	UTR_3_PRIME CoVb UPSTREAM CG11043 DOWNSTREAM CG9596 & 1 other
3L	9723497	3L_9723497_SNP [dm3] 3L_9730397_SNP [dm6]	C	T	7.409e^-4	0.86	SYNONYMOUS_CODING ATPsyn-b DOWNSTREAM Naa60 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	19103388	3L_19103388_SNP [dm3] 3L_19110288_SNP [dm6]	T	C	7.409e^-4	0.86	SYNONYMOUS_CODING CG14082
3L	6815657	3L_6815657_SNP [dm3] 3L_6822557_SNP [dm6]	G	C	7.439e^-4	0.86	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18284142	2L_18284142_DEL [dm3] 2L_18284142_DEL [dm6]	ATT	A	7.445e^-4	0.86	DOWNSTREAM CG31787 INTERGENIC
3L	21766024	3L_21766024_SNP [dm3] 3L_21772924_SNP [dm6]	A	G	7.464e^-4	0.86	INTRON CG42689
2R	16988075	2R_16988075_SNP [dm3] 2R_21100570_SNP [dm6]	A	G	7.505e^-4	0.86	SYNONYMOUS_CODING CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
2R	7956248	2R_7956248_SNP [dm3] 2R_12068743_SNP [dm6]	A	C	7.532e^-4	0.86	INTRON CG8888
3R	23129030	3R_23129030_SNP [dm3] 3R_27303308_SNP [dm6]	A	T	7.563e^-4	0.86	SYNONYMOUS_CODING CG3339
3R	9695040	3R_9695040_SNP [dm3] 3R_13869318_SNP [dm6]	A	T	7.563e^-4	0.86	INTRON E5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11963731	3R_11963731_SNP [dm3] 3R_16138009_SNP [dm6]	A	G	7.580e^-4	0.86	INTRON Sb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	15431207	X_15431207_SNP [dm3] X_15537174_SNP [dm6]	G	T	7.581e^-4	0.86	INTRON Ac13E
2R	12372445	2R_12372445_SNP [dm3] 2R_16484940_SNP [dm6]	A	G	7.586e^-4	0.86	SYNONYMOUS_CODING CG15712	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13834369	2R_13834369_SNP [dm3] 2R_17946864_SNP [dm6]	A	G	7.586e^-4	0.86	INTERGENIC
X	17634557	X_17634557_SNP [dm3] X_17740524_SNP [dm6]	T	C	7.586e^-4	0.86	SYNONYMOUS_CODING CG42684 INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13912692	2L_13912692_SNP [dm3] 2L_13912692_SNP [dm6]	C	G	7.656e^-4	0.86	DOWNSTREAM Ance-2 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12212298	3L_12212298_SNP [dm3] 3L_12219198_SNP [dm6]	G	A	7.693e^-4	0.86	INTRON app
2R	17050682	2R_17050682_SNP [dm3] 2R_21163177_SNP [dm6]	C	T	7.713e^-4	0.86	INTRON CG4266
3L	10466173	3L_10466173_SNP [dm3] 3L_10473073_SNP [dm6]	C	A	7.713e^-4	0.86	INTERGENIC
3L	10466292	3L_10466292_SNP [dm3] 3L_10473192_SNP [dm6]	C	T	7.713e^-4	0.86	INTERGENIC
3L	1321786	3L_1321786_SNP [dm3] 3L_1321786_SNP [dm6]	G	C	7.713e^-4	0.86	DOWNSTREAM CG9184 INTRON Myo61F
3R	11854711	3R_11854711_SNP [dm3] 3R_16028989_SNP [dm6]	A	G	7.713e^-4	0.86	INTRON pnr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	26532745	3R_26532745_INS [dm3] 3R_30707023_INS [dm6]	A	ATT	7.713e^-4	0.86	UPSTREAM CG31010 INTERGENIC
3R	26532748	3R_26532748_SNP [dm3] 3R_30707026_SNP [dm6]	T	A	7.713e^-4	0.86	UPSTREAM CG31010 INTERGENIC
3R	26532753	3R_26532753_SNP [dm3] 3R_30707031_SNP [dm6]	T	A	7.713e^-4	0.86	UPSTREAM CG31010 INTERGENIC
3R	26532794	3R_26532794_SNP [dm3] 3R_30707072_SNP [dm6]	G	T	7.713e^-4	0.86	UPSTREAM CG31010 INTERGENIC
3R	26532796	3R_26532796_INS [dm3] 3R_30707074_INS [dm6]	T	TC	7.713e^-4	0.86	UPSTREAM CG31010 INTERGENIC
X	16465879	X_16465879_SNP [dm3] X_16571846_SNP [dm6]	G	A	7.713e^-4	0.86	INTRON CanA-14F
2L	12178227	2L_12178227_SNP [dm3] 2L_12178227_SNP [dm6]	G	A	7.719e^-4	0.86	UPSTREAM atilla INTRON aret	TF binding site mE1_TFBS_HSA
3R	22842355	3R_22842355_SNP [dm3] 3R_27016633_SNP [dm6]	T	G	7.746e^-4	0.86	DOWNSTREAM CG17192 INTRON RYa-R
2L	18296450	2L_18296450_SNP [dm3] 2L_18296450_SNP [dm6]	C	T	7.769e^-4	0.86	SYNONYMOUS_CODING CG5790	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	18209521	2L_18209521_SNP [dm3] 2L_18209521_SNP [dm6]	C	G	7.797e^-4	0.86	UPSTREAM CG31802 INTRON CG42750
2L	18217690	2L_18217690_SNP [dm3] 2L_18217690_SNP [dm6]	C	T	7.797e^-4	0.86	INTRON CG42750
2L	18228830	2L_18228830_SNP [dm3] 2L_18228830_SNP [dm6]	G	T	7.797e^-4	0.86	INTRON CG42750
2L	18228838	2L_18228838_SNP [dm3] 2L_18228838_SNP [dm6]	A	G	7.797e^-4	0.86	INTRON CG42750
2L	18228842	2L_18228842_SNP [dm3] 2L_18228842_SNP [dm6]	A	G	7.797e^-4	0.86	INTRON CG42750
2L	18228863	2L_18228863_SNP [dm3] 2L_18228863_SNP [dm6]	T	C	7.797e^-4	0.86	INTRON CG42750
2L	18228870	2L_18228870_SNP [dm3] 2L_18228870_SNP [dm6]	T	A	7.797e^-4	0.86	INTRON CG42750
2L	18228874	2L_18228874_SNP [dm3] 2L_18228874_SNP [dm6]	G	A	7.797e^-4	0.86	INTRON CG42750
2L	18228886	2L_18228886_SNP [dm3] 2L_18228886_SNP [dm6]	C	T	7.797e^-4	0.86	INTRON CG42750
2L	18234532	2L_18234532_SNP [dm3] 2L_18234532_SNP [dm6]	A	G	7.797e^-4	0.86	INTRON CG42750	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
2L	18235380	2L_18235380_SNP [dm3] 2L_18235380_SNP [dm6]	T	C	7.797e^-4	0.86	INTRON CG42750	TF binding site BDTNP1_TFBS_prd
2L	18235492	2L_18235492_SNP [dm3] 2L_18235492_SNP [dm6]	C	T	7.797e^-4	0.86	INTRON CG42750	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	19805816	3R_19805816_SNP [dm3] 3R_23980094_SNP [dm6]	G	T	7.805e^-4	0.86	INTRON CG31140
2R	12023688	2R_12023688_SNP [dm3] 2R_16136183_SNP [dm6]	A	G	7.807e^-4	0.86	SPLICE_SITE_REGION spin INTRON spin
2R	12023760	2R_12023760_SNP [dm3] 2R_16136255_SNP [dm6]	A	T	7.807e^-4	0.86	SYNONYMOUS_CODING spin UTR_3_PRIME spin
3L	2683517	3L_2683517_SNP [dm3] 3L_2683517_SNP [dm6]	G	C	7.814e^-4	0.86	INTRON Fife
3L	5643547	3L_5643547_SNP [dm3] 3L_5650447_SNP [dm6]	G	T	7.818e^-4	0.86	UTR_3_PRIME Blimp-1
2R	18321663	2R_18321663_SNP [dm3] 2R_22434158_SNP [dm6]	C	G	7.829e^-4	0.86	INTERGENIC
3R	12933173	3R_12933173_SNP [dm3] 3R_17107451_SNP [dm6]	C	G	7.829e^-4	0.86	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	770067	2L_770067_INS [dm3] 2L_770067_INS [dm6]	T	TTACTAT	7.868e^-4	0.86	INTERGENIC
2L	770213	2L_770213_SNP [dm3] 2L_770213_SNP [dm6]	A	G	7.868e^-4	0.86	INTERGENIC
2L	770255	2L_770255_SNP [dm3] 2L_770255_SNP [dm6]	T	C	7.868e^-4	0.86	INTERGENIC
2L	770287	2L_770287_SNP [dm3] 2L_770287_SNP [dm6]	G	A	7.868e^-4	0.86	INTERGENIC
3L	15323353	3L_15323353_SNP [dm3] 3L_15330253_SNP [dm6]	G	A	7.893e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	16760961	3R_16760961_SNP [dm3] 3R_20935239_SNP [dm6]	T	C	7.893e^-4	0.86	INTRON CG31191
3R	21304551	3R_21304551_SNP [dm3] 3R_25478829_SNP [dm6]	A	G	7.893e^-4	0.86	SYNONYMOUS_CODING XNP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24078568	3R_24078568_SNP [dm3] 3R_28252846_SNP [dm6]	G	T	7.893e^-4	0.86	INTERGENIC
3R	24078571	3R_24078571_SNP [dm3] 3R_28252849_SNP [dm6]	T	A	7.893e^-4	0.86	INTERGENIC
3L	14435275	3L_14435275_SNP [dm3] 3L_14442175_SNP [dm6]	C	T	7.904e^-4	0.86	INTRON bbg
3L	14435448	3L_14435448_SNP [dm3] 3L_14442348_SNP [dm6]	A	C	7.904e^-4	0.86	INTRON bbg
2L	21916384	2L_21916384_SNP [dm3] 2L_21916384_SNP [dm6]	C	G	7.942e^-4	0.86	UTR_5_PRIME CG11634
2R	10458241	2R_10458241_SNP [dm3] 2R_14570736_SNP [dm6]	C	T	7.942e^-4	0.86	DOWNSTREAM LamC INTRON ttv
2R	6236654	2R_6236654_SNP [dm3] 2R_10349149_SNP [dm6]	A	G	7.942e^-4	0.86	INTRON CG42732
3L	16767264	3L_16767264_SNP [dm3] 3L_16774164_SNP [dm6]	G	T	7.942e^-4	0.86	SYNONYMOUS_CODING Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	12837853	X_12837853_SNP [dm3] X_12943820_SNP [dm6]	T	C	7.942e^-4	0.86	INTRON fne
X	9949582	X_9949582_SNP [dm3] X_10055549_SNP [dm6]	T	C	7.942e^-4	0.86	UPSTREAM CR45601 DOWNSTREAM CG15312 & 1 other INTERGENIC
X	9949600	X_9949600_SNP [dm3] X_10055567_SNP [dm6]	A	T	7.942e^-4	0.86	UPSTREAM CR45601 DOWNSTREAM CG15312 & 1 other INTERGENIC
X	9949604	X_9949604_SNP [dm3] X_10055571_SNP [dm6]	A	T	7.942e^-4	0.86	UPSTREAM CR45601 DOWNSTREAM CG15312 & 1 other INTERGENIC
X	9949609	X_9949609_SNP [dm3] X_10055576_SNP [dm6]	A	G	7.942e^-4	0.86	UPSTREAM CR45601 DOWNSTREAM CG15312 & 1 other INTERGENIC
2L	9284419	2L_9284419_DEL [dm3] 2L_9284419_DEL [dm6]	AGAAG	T	7.953e^-4	0.86	INTRON Ggamma30A
2L	9284425	2L_9284425_SNP [dm3] 2L_9284425_SNP [dm6]	C	T	7.953e^-4	0.86	INTRON Ggamma30A
2L	9284451	2L_9284451_SNP [dm3] 2L_9284451_SNP [dm6]	T	G	7.953e^-4	0.86	INTRON Ggamma30A
2L	9284452	2L_9284452_SNP [dm3] 2L_9284452_SNP [dm6]	T	C	7.953e^-4	0.86	INTRON Ggamma30A
3L	3484522	3L_3484522_SNP [dm3] 3L_3484522_SNP [dm6]	C	A	7.954e^-4	0.86	INTRON CG42324 & 1 other
2L	2085255	2L_2085255_SNP [dm3] 2L_2085255_SNP [dm6]	T	G	7.961e^-4	0.86	DOWNSTREAM CR44055 INTRON dpr3
2L	15345796	2L_15345796_SNP [dm3] 2L_15345796_SNP [dm6]	T	C	7.966e^-4	0.86	INTERGENIC
2R	17566969	2R_17566969_SNP [dm3] 2R_21679464_SNP [dm6]	C	G	7.978e^-4	0.86	NON_SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13334423	3L_13334423_DEL [dm3] 3L_13341323_DEL [dm6]	AACTGCCTCGCTTTA...	A	7.979e^-4	0.86	INTERGENIC
2R	14230121	2R_14230121_SNP [dm3] 2R_18342616_SNP [dm6]	C	G	7.999e^-4	0.86	INTRON sbb
X	21898981	X_21898981_SNP [dm3] X_22497145_SNP [dm6]	C	A	8.010e^-4	0.86	INTRON l_1_G0196
2L	10349333	2L_10349333_SNP [dm3] 2L_10349333_SNP [dm6]	A	T	8.010e^-4	0.86	INTRON CG34367
3L	20496491	3L_20496491_SNP [dm3] 3L_20503391_SNP [dm6]	G	C	8.026e^-4	0.86	UPSTREAM CG17637 INTRON CG32425	transposable element FlyBase
2L	3943194	2L_3943194_SNP [dm3] 2L_3943194_SNP [dm6]	C	A	8.037e^-4	0.86	INTRON fred
2L	16847802	2L_16847802_SNP [dm3] 2L_16847802_SNP [dm6]	C	G	8.055e^-4	0.86	UPSTREAM CG13284 INTRON CG13284
2L	6589467	2L_6589467_SNP [dm3] 2L_6589467_SNP [dm6]	C	G	8.060e^-4	0.86	INTRON CG11319
2R	11845329	2R_11845329_SNP [dm3] 2R_15957824_SNP [dm6]	C	T	8.071e^-4	0.86	SYNONYMOUS_CODING Strn-Mlck UPSTREAM Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26532792	3R_26532792_SNP [dm3] 3R_30707070_SNP [dm6]	C	T	8.078e^-4	0.86	UPSTREAM CG31010 INTERGENIC
X	5206748	X_5206748_SNP [dm3] X_5312715_SNP [dm6]	T	C	8.098e^-4	0.86	SYNONYMOUS_CODING dhd UPSTREAM TrxT & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18147616	2L_18147616_SNP [dm3] 2L_18147616_SNP [dm6]	T	G	8.101e^-4	0.86	INTRON Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11845054	2R_11845054_SNP [dm3] 2R_15957549_SNP [dm6]	A	C	8.109e^-4	0.86	UPSTREAM Strn-Mlck DOWNSTREAM CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	12375429	2R_12375429_SNP [dm3] 2R_16487924_SNP [dm6]	A	C	8.109e^-4	0.86	UPSTREAM CG33459 DOWNSTREAM CG33458 INTERGENIC
3L	10841019	3L_10841019_SNP [dm3] 3L_10847919_SNP [dm6]	T	A	8.145e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7632071	2L_7632071_SNP [dm3] 2L_7632071_SNP [dm6]	A	G	8.154e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	20280114	3L_20280114_SNP [dm3] 3L_20287014_SNP [dm6]	A	G	8.182e^-4	0.86	INTRON gogo
3R	17813282	3R_17813282_SNP [dm3] 3R_21987560_SNP [dm6]	A	C	8.182e^-4	0.86	INTRON Eip93F
2L	2856583	2L_2856583_SNP [dm3] 2L_2856583_SNP [dm6]	G	A	8.188e^-4	0.86	UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14912763	2L_14912763_SNP [dm3] 2L_14912763_SNP [dm6]	T	A	8.197e^-4	0.86	INTRON CG42313
3L	13365275	3L_13365275_SNP [dm3] 3L_13372175_SNP [dm6]	A	G	8.200e^-4	0.86	INTERGENIC
3R	26383176	3R_26383176_SNP [dm3] 3R_30557454_SNP [dm6]	C	T	8.200e^-4	0.86	INTRON tmod & 1 other	TF binding site BDTNP1_TFBS_twi
3R	26383894	3R_26383894_DEL [dm3] 3R_30558172_DEL [dm6]	AA	A	8.200e^-4	0.86	INTRON tmod & 1 other
3R	26383904	3R_26383904_SNP [dm3] 3R_30558182_SNP [dm6]	A	T	8.200e^-4	0.86	INTRON tmod & 1 other
3R	26383967	3R_26383967_SNP [dm3] 3R_30558245_SNP [dm6]	C	A	8.200e^-4	0.86	INTRON tmod & 1 other
2L	16450431	2L_16450431_SNP [dm3] 2L_16450431_SNP [dm6]	T	C	8.224e^-4	0.86	SYNONYMOUS_CODING Idgf2 UPSTREAM Idgf3
2L	6556566	2L_6556566_SNP [dm3] 2L_6556566_SNP [dm6]	C	T	8.224e^-4	0.86	SYNONYMOUS_CODING Osm6	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6558515	2L_6558515_SNP [dm3] 2L_6558515_SNP [dm6]	C	T	8.224e^-4	0.86	SYNONYMOUS_CODING CoVb UPSTREAM CG11043 DOWNSTREAM CG9596	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	10507820	3R_10507820_SNP [dm3] 3R_14682098_SNP [dm6]	A	T	8.245e^-4	0.86	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	2662384	X_2662384_INS [dm3] X_2768351_INS [dm6]	G	TT	8.247e^-4	0.86	INTRON kirre
2R	14321701	2R_14321701_SNP [dm3] 2R_18434196_SNP [dm6]	G	A	8.271e^-4	0.86	INTRON CG30118
X	12837814	X_12837814_SNP [dm3] X_12943781_SNP [dm6]	T	C	8.271e^-4	0.86	INTRON fne
3L	14075442	3L_14075442_SNP [dm3] 3L_14082342_SNP [dm6]	T	C	8.364e^-4	0.86	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18929032	3L_18929032_SNP [dm3] 3L_18935932_SNP [dm6]	A	T	8.364e^-4	0.86	INTRON CG32204
2R	14357795	2R_14357795_SNP [dm3] 2R_18470290_SNP [dm6]	G	A	8.367e^-4	0.86	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6812407	3L_6812407_SNP [dm3] 3L_6819307_SNP [dm6]	A	T	8.384e^-4	0.86	INTERGENIC
3R	3580028	3R_3580028_SNP [dm3] 3R_7754306_SNP [dm6]	T	C	8.393e^-4	0.86	INTERGENIC
X	11127560	X_11127560_SNP [dm3] X_11233527_SNP [dm6]	T	C	8.393e^-4	0.86	INTRON CG44422	TF binding site mE1_TFBS_HSA
3L	8232151	3L_8232151_INS [dm3] 3L_8239051_INS [dm6]	T	TGTT	8.409e^-4	0.86	INTRON CG7213 & 1 other
2R	13907135	2R_13907135_SNP [dm3] 2R_18019630_SNP [dm6]	C	T	8.423e^-4	0.86	SYNONYMOUS_CODING CG5084 UPSTREAM CG10910	TF binding site mE1_TFBS_cad
2R	13907196	2R_13907196_SNP [dm3] 2R_18019691_SNP [dm6]	A	G	8.423e^-4	0.86	NON_SYNONYMOUS_CODING CG5084 UPSTREAM CG10910	TF binding site mE1_TFBS_cad
2R	13907205	2R_13907205_SNP [dm3] 2R_18019700_SNP [dm6]	A	C	8.423e^-4	0.86	NON_SYNONYMOUS_CODING CG5084 UPSTREAM CG10910	TF binding site mE1_TFBS_cad
2R	14116677	2R_14116677_SNP [dm3] 2R_18229172_SNP [dm6]	A	T	8.423e^-4	0.86	DOWNSTREAM CR45310 EXON CR45311	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	8407158	X_8407158_SNP [dm3] X_8513125_SNP [dm6]	T	A	8.424e^-4	0.86	INTRON CG33181
2L	16791637	2L_16791637_SNP [dm3] 2L_16791637_SNP [dm6]	C	T	8.433e^-4	0.86	START_GAINED CG17928 UTR_5_PRIME CG17928 UPSTREAM Cyt-b5-r	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	18353347	2R_18353347_SNP [dm3] 2R_22465842_SNP [dm6]	A	G	8.437e^-4	0.86	INTRON CG10384
2L	17132777	2L_17132777_SNP [dm3] 2L_17132777_SNP [dm6]	C	T	8.458e^-4	0.86	INTRON beat-IIIa & 1 other
2R	4936744	2R_4936744_SNP [dm3] 2R_9049239_SNP [dm6]	C	G	8.458e^-4	0.86	INTRON CG13743
2R	4936746	2R_4936746_SNP [dm3] 2R_9049241_SNP [dm6]	G	T	8.458e^-4	0.86	INTRON CG13743
3L	15228660	3L_15228660_SNP [dm3] 3L_15235560_SNP [dm6]	C	A	8.458e^-4	0.86	UPSTREAM Tollo INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	15233541	3L_15233541_SNP [dm3] 3L_15240441_SNP [dm6]	G	A	8.458e^-4	0.86	UTR_3_PRIME Tollo
3L	3561919	3L_3561919_DEL [dm3] 3L_3561919_DEL [dm6]	AAAA	A	8.458e^-4	0.86	INTRON Eip63E
3L	3616459	3L_3616459_SNP [dm3] 3L_3616459_SNP [dm6]	T	A	8.458e^-4	0.86	INTRON CG10357	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	8532386	3L_8532386_SNP [dm3] 3L_8539286_SNP [dm6]	A	C	8.458e^-4	0.86	INTERGENIC
3L	8532389	3L_8532389_SNP [dm3] 3L_8539289_SNP [dm6]	G	C	8.458e^-4	0.86	INTERGENIC
X	11823932	X_11823932_SNP [dm3] X_11929899_SNP [dm6]	T	C	8.458e^-4	0.86	SYNONYMOUS_CODING CG10362
X	17183759	X_17183759_SNP [dm3] X_17289726_SNP [dm6]	G	T	8.458e^-4	0.86	INTRON CG5445 & 1 other
X	17183781	X_17183781_SNP [dm3] X_17289748_SNP [dm6]	T	C	8.458e^-4	0.86	INTRON CG5445 & 1 other
X	17183799	X_17183799_SNP [dm3] X_17289766_SNP [dm6]	A	G	8.458e^-4	0.86	INTRON CG5445 & 1 other
X	18867787	X_18867787_SNP [dm3] X_18973754_SNP [dm6]	A	G	8.458e^-4	0.86	INTRON CG43759
X	18867900	X_18867900_SNP [dm3] X_18973867_SNP [dm6]	C	T	8.458e^-4	0.86	INTRON CG43759
X	19732837	X_19732837_SNP [dm3] X_19838804_SNP [dm6]	G	T	8.458e^-4	0.86	INTRON pico
2L	1100390	2L_1100390_SNP [dm3] 2L_1100390_SNP [dm6]	T	C	8.473e^-4	0.86	INTRON CG4629
3R	16891400	3R_16891400_SNP [dm3] 3R_21065678_SNP [dm6]	T	G	8.492e^-4	0.86	UPSTREAM AnxB9 INTRON AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	19484520	X_19484520_SNP [dm3] X_19590487_SNP [dm6]	C	T	8.492e^-4	0.86	UPSTREAM CG14219 INTERGENIC
3R	19615410	3R_19615410_SNP [dm3] 3R_23789688_SNP [dm6]	G	C	8.495e^-4	0.86	INTRON mbc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12163939	2R_12163939_SNP [dm3] 2R_16276434_SNP [dm6]	A	C	8.506e^-4	0.86	NON_SYNONYMOUS_CODING CG33017
3L	16766787	3L_16766787_SNP [dm3] 3L_16773687_SNP [dm6]	T	G	8.514e^-4	0.86	INTRON Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	16766792	3L_16766792_SNP [dm3] 3L_16773692_SNP [dm6]	G	T	8.514e^-4	0.86	INTRON Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	16766793	3L_16766793_SNP [dm3] 3L_16773693_SNP [dm6]	G	A	8.514e^-4	0.86	INTRON Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	17081497	2L_17081497_SNP [dm3] 2L_17081497_SNP [dm6]	G	A	8.518e^-4	0.86	INTERGENIC
X	3893775	X_3893775_SNP [dm3] X_3999742_SNP [dm6]	A	G	8.526e^-4	0.86	INTERGENIC
2L	10145612	2L_10145612_SNP [dm3] 2L_10145612_SNP [dm6]	A	G	8.528e^-4	0.86	UTR_5_PRIME CG4839 INTRON CG44153 & 1 other
2L	20488836	2L_20488836_SNP [dm3] 2L_20488836_SNP [dm6]	G	T	8.528e^-4	0.86	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16997035	3R_16997035_SNP [dm3] 3R_21171313_SNP [dm6]	G	C	8.530e^-4	0.86	INTRON SNF4Agamma
3L	20627423	3L_20627423_SNP [dm3] 3L_20634323_SNP [dm6]	C	T	8.550e^-4	0.86	DOWNSTREAM CR44681 EXON CR44682	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16467931	2L_16467931_SNP [dm3] 2L_16467931_SNP [dm6]	T	C	8.566e^-4	0.86	INTRON dac	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	24787009	3R_24787009_SNP [dm3] 3R_28961287_SNP [dm6]	T	C	8.577e^-4	0.86	INTRON CG14521
2R	5648610	2R_5648610_SNP [dm3] 2R_9761105_SNP [dm6]	T	A	8.633e^-4	0.86	INTRON trpl
2R	5648613	2R_5648613_SNP [dm3] 2R_9761108_SNP [dm6]	A	T	8.633e^-4	0.86	INTRON trpl
3L	12244961	3L_12244961_SNP [dm3] 3L_12251861_SNP [dm6]	T	C	8.636e^-4	0.86	INTRON app
2L	5959652	2L_5959652_SNP [dm3] 2L_5959652_SNP [dm6]	G	T	8.663e^-4	0.86	UTR_3_PRIME Vm26Aa DOWNSTREAM Vm26Aa
2L	5959623	2L_5959623_SNP [dm3] 2L_5959623_SNP [dm6]	A	T	8.731e^-4	0.86	UTR_3_PRIME Vm26Aa UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa
2L	7717821	2L_7717821_SNP [dm3] 2L_7717821_SNP [dm6]	A	G	8.742e^-4	0.86	INTRON CG13793
X	5323249	X_5323249_SNP [dm3] X_5429216_SNP [dm6]	T	G	8.758e^-4	0.86	UPSTREAM CG15784 DOWNSTREAM CG16756 EXON CR45517
2R	10685239	2R_10685239_SNP [dm3] 2R_14797734_SNP [dm6]	C	T	8.797e^-4	0.86	UPSTREAM kn INTRON kn
2R	20442810	2R_20442810_SNP [dm3] 2R_24555287_SNP [dm6]	A	G	8.867e^-4	0.86	INTRON CG4622 & 1 other
2L	9586230	2L_9586230_SNP [dm3] 2L_9586230_SNP [dm6]	G	T	8.923e^-4	0.86	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
2L	7189279	2L_7189279_DEL [dm3] 2L_7189279_DEL [dm6]	CGATAAGC	C	8.936e^-4	0.86	INTRON CG4496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7189408	2L_7189408_SNP [dm3] 2L_7189408_SNP [dm6]	C	T	8.936e^-4	0.86	INTRON CG4496	TF binding site BDTNP1_TFBS_dl
3R	15744711	3R_15744711_SNP [dm3] 3R_19918989_SNP [dm6]	C	T	8.940e^-4	0.86	SYNONYMOUS_CODING CG4770
3R	19533182	3R_19533182_SNP [dm3] 3R_23707460_SNP [dm6]	T	A	8.940e^-4	0.86	UPSTREAM CR44052 INTRON CG31414
2L	9017646	2L_9017646_SNP [dm3] 2L_9017646_SNP [dm6]	A	G	8.968e^-4	0.86	INTERGENIC
3L	20275600	3L_20275600_DEL [dm3] 3L_20282500_DEL [dm6]	CC	C	9.044e^-4	0.86	INTRON gogo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17730715	2R_17730715_SNP [dm3] 2R_21843210_SNP [dm6]	C	G	9.046e^-4	0.86	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4757956	2L_4757956_DEL [dm3] 2L_4757956_DEL [dm6]	AC	A	9.051e^-4	0.86	INTRON CG15630
2L	14304576	2L_14304576_SNP [dm3] 2L_14304576_SNP [dm6]	G	A	9.061e^-4	0.86	INTRON wb	TF binding site mE1_TFBS_inv
3R	6978431	3R_6978431_SNP [dm3] 3R_11152709_SNP [dm6]	C	T	9.068e^-4	0.86	NON_SYNONYMOUS_CODING Ugt86Di
2L	7476303	2L_7476303_SNP [dm3] 2L_7476303_SNP [dm6]	C	T	9.115e^-4	0.86	NON_SYNONYMOUS_CODING CG6441 INTRON Ziz
X	20258601	X_20258601_SNP [dm3] X_20387574_SNP [dm6]	G	C	9.136e^-4	0.86	INTERGENIC
3L	14077012	3L_14077012_DEL [dm3] 3L_14083912_DEL [dm6]	TATTGT	C	9.169e^-4	0.86	DOWNSTREAM btl INTRON CG8100
3L	14077038	3L_14077038_SNP [dm3] 3L_14083938_SNP [dm6]	T	C	9.169e^-4	0.86	DOWNSTREAM btl INTRON CG8100
3L	3009114	3L_3009114_SNP [dm3] 3L_3009114_SNP [dm6]	T	C	9.169e^-4	0.86	SYNONYMOUS_CODING FMRFaR	TF binding site mE1_TFBS_cad
X	5575745	X_5575745_SNP [dm3] X_5681712_SNP [dm6]	T	C	9.169e^-4	0.86	SYNONYMOUS_CODING Gr5a EXON CR44958	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5575792	X_5575792_SNP [dm3] X_5681759_SNP [dm6]	C	T	9.169e^-4	0.86	SPLICE_SITE_REGION Gr5a INTRON Gr5a EXON CR44958	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5575840	X_5575840_SNP [dm3] X_5681807_SNP [dm6]	T	C	9.169e^-4	0.86	INTRON Gr5a EXON CR44958	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21751952	3R_21751952_SNP [dm3] 3R_25926230_SNP [dm6]	A	G	9.227e^-4	0.86	INTRON CCAP-R
3L	17809734	3L_17809734_SNP [dm3] 3L_17816634_SNP [dm6]	T	A	9.234e^-4	0.86	NON_SYNONYMOUS_CODING Ir75a
3L	16190303	3L_16190303_SNP [dm3] 3L_16197203_SNP [dm6]	C	G	9.244e^-4	0.86	UPSTREAM CG33687 EXON CR45437
2L	17430719	2L_17430719_INS [dm3] 2L_17430719_INS [dm6]	A	TT	9.244e^-4	0.86	DOWNSTREAM CR44409 INTRON Dif
2L	9031480	2L_9031480_DEL [dm3] 2L_9031480_DEL [dm6]	GTTTTGTG	A	9.257e^-4	0.86	INTRON CG9582 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9031525	2L_9031525_SNP [dm3] 2L_9031525_SNP [dm6]	A	C	9.257e^-4	0.86	INTRON CG9582 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13918761	2L_13918761_SNP [dm3] 2L_13918761_SNP [dm6]	C	T	9.260e^-4	0.86	INTRON Ance-3
2R	6784186	2R_6784186_SNP [dm3] 2R_10896681_SNP [dm6]	C	A	9.261e^-4	0.86	DOWNSTREAM CG7712 INTRON CG12942	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3608469	3L_3608469_SNP [dm3] 3L_3608469_SNP [dm6]	T	A	9.281e^-4	0.86	UTR_3_PRIME Eip63E
2L	6327662	2L_6327662_SNP [dm3] 2L_6327662_SNP [dm6]	T	A	9.285e^-4	0.86	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24704886	3R_24704886_SNP [dm3] 3R_28879164_SNP [dm6]	A	C	9.294e^-4	0.86	SYNONYMOUS_CODING CG14523 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11468729	3L_11468729_SNP [dm3] 3L_11475629_SNP [dm6]	C	G	9.318e^-4	0.86	DOWNSTREAM Vha16-2 INTERGENIC
2L	2856358	2L_2856358_SNP [dm3] 2L_2856358_SNP [dm6]	C	A	9.342e^-4	0.86	UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2856419	2L_2856419_SNP [dm3] 2L_2856419_SNP [dm6]	C	T	9.342e^-4	0.86	SYNONYMOUS_CODING RpS21 UPSTREAM CG3104 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2856613	2L_2856613_SNP [dm3] 2L_2856613_SNP [dm6]	G	C	9.342e^-4	0.86	UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	2856615	2L_2856615_SNP [dm3] 2L_2856615_SNP [dm6]	A	C	9.342e^-4	0.86	UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	2856623	2L_2856623_SNP [dm3] 2L_2856623_SNP [dm6]	C	T	9.342e^-4	0.86	SPLICE_SITE_REGION RpS21 UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	2856922	2L_2856922_SNP [dm3] 2L_2856922_SNP [dm6]	G	A	9.342e^-4	0.86	UTR_3_PRIME RpS21 UPSTREAM CG2991 DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	2856926	2L_2856926_SNP [dm3] 2L_2856926_SNP [dm6]	T	A	9.342e^-4	0.86	UTR_3_PRIME RpS21 UPSTREAM CG2991 DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	6574229	2L_6574229_SNP [dm3] 2L_6574229_SNP [dm6]	G	A	9.342e^-4	0.86	SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad
2R	9737845	2R_9737845_SNP [dm3] 2R_13850340_SNP [dm6]	C	T	9.365e^-4	0.86	SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
X	14504103	X_14504103_SNP [dm3] X_14610070_SNP [dm6]	G	A	9.370e^-4	0.86	INTRON NetA
2L	7700264	2L_7700264_SNP [dm3] 2L_7700264_SNP [dm6]	A	G	9.386e^-4	0.86	NON_SYNONYMOUS_CODING Tep2
2L	7700275	2L_7700275_SNP [dm3] 2L_7700275_SNP [dm6]	G	A	9.386e^-4	0.86	SYNONYMOUS_CODING Tep2
2L	7700445	2L_7700445_SNP [dm3] 2L_7700445_SNP [dm6]	C	G	9.386e^-4	0.86	NON_SYNONYMOUS_CODING Tep2
2L	7708184	2L_7708184_SNP [dm3] 2L_7708184_SNP [dm6]	G	A	9.386e^-4	0.86	INTRON Tep3 EXON CR44990
2L	7708190	2L_7708190_SNP [dm3] 2L_7708190_SNP [dm6]	T	C	9.386e^-4	0.86	INTRON Tep3 EXON CR44990
3L	6812461	3L_6812461_SNP [dm3] 3L_6819361_SNP [dm6]	A	G	9.428e^-4	0.86	INTERGENIC
2L	6557345	2L_6557345_SNP [dm3] 2L_6557345_SNP [dm6]	T	C	9.481e^-4	0.86	SYNONYMOUS_CODING Osm6 UPSTREAM CoVb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6557426	2L_6557426_SNP [dm3] 2L_6557426_SNP [dm6]	T	C	9.481e^-4	0.86	UTR_5_PRIME Osm6 UPSTREAM CoVb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11722716	3L_11722716_SNP [dm3] 3L_11729616_SNP [dm6]	A	G	9.490e^-4	0.86	SYNONYMOUS_CODING CG32088
3L	7795207	3L_7795207_SNP [dm3] 3L_7802107_SNP [dm6]	T	A	9.490e^-4	0.86	INTRON CG32369
3R	17610733	3R_17610733_SNP [dm3] 3R_21785011_SNP [dm6]	T	C	9.490e^-4	0.86	UTR_3_PRIME CASK DOWNSTREAM CASK EXON CRG	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11845955	3L_11845955_SNP [dm3] 3L_11852855_SNP [dm6]	T	A	9.527e^-4	0.86	INTRON CG44837
2R	12254748	2R_12254748_SNP [dm3] 2R_16367243_SNP [dm6]	G	A	9.535e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14868271	3L_14868271_SNP [dm3] 3L_14875171_SNP [dm6]	A	T	9.535e^-4	0.86	INTRON CG17839
2R	10985993	2R_10985993_SNP [dm3] 2R_15098488_SNP [dm6]	G	C	9.555e^-4	0.86	INTERGENIC
2R	17129137	2R_17129137_SNP [dm3] 2R_21241632_SNP [dm6]	T	A	9.555e^-4	0.86	INTRON ASPP
2R	17129191	2R_17129191_SNP [dm3] 2R_21241686_SNP [dm6]	T	C	9.555e^-4	0.86	INTRON ASPP
2L	1340531	2L_1340531_SNP [dm3] 2L_1340531_SNP [dm6]	A	G	9.557e^-4	0.86	DOWNSTREAM CG33923 INTERGENIC
2R	10040723	2R_10040723_SNP [dm3] 2R_14153218_SNP [dm6]	A	C	9.557e^-4	0.86	UTR_5_PRIME pea UPSTREAM Rcd1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	11443414	2R_11443414_SNP [dm3] 2R_15555909_SNP [dm6]	T	C	9.557e^-4	0.86	UPSTREAM CG12963 INTRON CG12963
2L	8047510	2L_8047510_SNP [dm3] 2L_8047510_SNP [dm6]	C	G	9.564e^-4	0.86	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9724718	3L_9724718_SNP [dm3] 3L_9731618_SNP [dm6]	C	G	9.575e^-4	0.86	SYNONYMOUS_CODING CG6749 DOWNSTREAM ATPsyn-b	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6812471	3L_6812471_SNP [dm3] 3L_6819371_SNP [dm6]	T	C	9.581e^-4	0.86	INTERGENIC
3R	13073632	3R_13073632_DEL [dm3] 3R_17247910_DEL [dm6]	TGCTGCC	T	9.615e^-4	0.86	UTR_5_PRIME beat-IIb UPSTREAM beat-IIb
2L	1675321	2L_1675321_SNP [dm3] 2L_1675321_SNP [dm6]	C	T	9.718e^-4	0.86	INTRON chinmo
2L	2807639	2L_2807639_SNP [dm3] 2L_2807639_SNP [dm6]	T	C	9.718e^-4	0.86	UPSTREAM daw INTRON daw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6711231	2L_6711231_INS [dm3] 2L_6711231_INS [dm6]	A	AAAGTTAACAA...	9.718e^-4	0.86	DOWNSTREAM AkhR INTERGENIC
2L	6747296	2L_6747296_SNP [dm3] 2L_6747296_SNP [dm6]	G	A	9.718e^-4	0.86	DOWNSTREAM CG44271 INTRON CG11221
2L	7488773	2L_7488773_SNP [dm3] 2L_7488773_SNP [dm6]	A	C	9.718e^-4	0.86	INTRON Ziz
2L	7636756	2L_7636756_SNP [dm3] 2L_7636756_SNP [dm6]	T	C	9.718e^-4	0.86	UPSTREAM CR44800 DOWNSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7636837	2L_7636837_SNP [dm3] 2L_7636837_SNP [dm6]	A	C	9.718e^-4	0.86	UPSTREAM CR44800 DOWNSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7637649	2L_7637649_SNP [dm3] 2L_7637649_SNP [dm6]	G	T	9.718e^-4	0.86	DOWNSTREAM CR44800 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	8481564	2L_8481564_SNP [dm3] 2L_8481564_SNP [dm6]	A	G	9.718e^-4	0.86	UPSTREAM tRNA:CR31896 & 1 other DOWNSTREAM tRNA:CR31892 INTRON d
2L	8482905	2L_8482905_SNP [dm3] 2L_8482905_SNP [dm6]	G	C	9.718e^-4	0.86	UTR_3_PRIME CG43796 UPSTREAM tRNA:CR31892 INTRON d	TF binding site mE1_TFBS_chinmo
2R	14267305	2R_14267305_SNP [dm3] 2R_18379800_SNP [dm6]	C	T	9.718e^-4	0.86	INTERGENIC
3L	6275712	3L_6275712_SNP [dm3] 3L_6282612_SNP [dm6]	A	G	9.718e^-4	0.86	INTERGENIC
X	19732838	X_19732838_SNP [dm3] X_19838805_SNP [dm6]	G	T	9.718e^-4	0.86	INTRON pico
X	2598847	X_2598847_SNP [dm3] X_2704814_SNP [dm6]	T	C	9.718e^-4	0.86	UPSTREAM Csat INTRON eIF2B-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11845746	3L_11845746_SNP [dm3] 3L_11852646_SNP [dm6]	C	T	9.723e^-4	0.86	INTRON CG44837	TF binding site mE1_TFBS_chinmo
2R	6873552	2R_6873552_SNP [dm3] 2R_10986047_SNP [dm6]	C	T	9.731e^-4	0.86	INTRON luna
3R	11963797	3R_11963797_SNP [dm3] 3R_16138075_SNP [dm6]	T	G	9.755e^-4	0.86	INTRON Sb	TF binding site mE1_TFBS_inv
2L	16877849	2L_16877849_SNP [dm3] 2L_16877849_SNP [dm6]	C	T	9.799e^-4	0.86	DOWNSTREAM CG32832 EXON CR31781	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1958840	2L_1958840_SNP [dm3] 2L_1958840_SNP [dm6]	G	A	9.821e^-4	0.86	INTRON erm	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3740451	2L_3740451_SNP [dm3] 2L_3740451_SNP [dm6]	G	A	9.821e^-4	0.86	INTRON CG10019
2L	8255578	2L_8255578_SNP [dm3] 2L_8255578_SNP [dm6]	A	T	9.821e^-4	0.86	INTRON CG8086
2L	8255579	2L_8255579_SNP [dm3] 2L_8255579_SNP [dm6]	A	G	9.821e^-4	0.86	INTRON CG8086
2L	8255658	2L_8255658_DEL [dm3] 2L_8255658_DEL [dm6]	ATCATCG	C	9.821e^-4	0.86	INTRON CG8086
2R	16392232	2R_16392232_SNP [dm3] 2R_20504727_SNP [dm6]	T	C	9.845e^-4	0.86	SYNONYMOUS_CODING Obp57b UPSTREAM Obp57a DOWNSTREAM Obp57c	regulatory region REDfly_CRMs
X	16748543	X_16748543_SNP [dm3] X_16854510_SNP [dm6]	G	T	9.918e^-4	0.86	INTRON CG13003
3R	22722251	3R_22722251_SNP [dm3] 3R_26896529_SNP [dm6]	A	G	9.943e^-4	0.86	INTRON T48	regulatory region REDfly_CRMs
3L	12899251	3L_12899251_SNP [dm3] 3L_12906151_SNP [dm6]	A	T	9.955e^-4	0.86	INTERGENIC
3R	9867620	3R_9867620_SNP [dm3] 3R_14041898_SNP [dm6]	A	C	9.956e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9867630	3R_9867630_SNP [dm3] 3R_14041908_SNP [dm6]	G	A	9.956e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14285088	X_14285088_INS [dm3] X_14391055_INS [dm6]	C	GCGGTTATAAATCA...	9.956e^-4	0.86	INTRON dpr8	TF binding site BDTNP1_TFBS_twi
3R	13966217	3R_13966217_SNP [dm3] 3R_18140495_SNP [dm6]	A	C	9.960e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13123859	2R_13123859_SNP [dm3] 2R_17236354_SNP [dm6]	A	T	9.968e^-4	0.86	INTRON mbl
2R	13130924	2R_13130924_SNP [dm3] 2R_17243419_SNP [dm6]	C	T	9.968e^-4	0.86	INTRON mbl
2R	16499822	2R_16499822_SNP [dm3] 2R_20612317_SNP [dm6]	T	C	9.968e^-4	0.86	INTRON Hil
2R	19301073	2R_19301073_SNP [dm3] 2R_23413550_SNP [dm6]	G	C	9.968e^-4	0.86	NON_SYNONYMOUS_CODING CG9812 INTRON CG9812
3L	3521455	3L_3521455_SNP [dm3] 3L_3521455_SNP [dm6]	G	C	9.968e^-4	0.86	INTRON Eip63E
X	11353044	X_11353044_SNP [dm3] X_11459011_SNP [dm6]	A	G	9.968e^-4	0.86	UTR_3_PRIME HP5 UPSTREAM CG43155

By genomic position
Variant impact
Gene name

LogMiu60 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results