DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.854e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.072556

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1018 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	7403149	2R_7403149_SNP [dm3] 2R_11515644_SNP [dm6]	C	T	5.936e^-6	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13941266	3L_13941266_SNP [dm3] 3L_13948166_SNP [dm6]	G	T	5.936e^-6	0.887	INTRON CG32137
3L	8124936	3L_8124936_SNP [dm3] 3L_8131836_SNP [dm6]	T	C	5.936e^-6	0.887	SYNONYMOUS_CODING CG7504 DOWNSTREAM CdsA
3L	8124987	3L_8124987_SNP [dm3] 3L_8131887_SNP [dm6]	T	A	5.936e^-6	0.887	NON_SYNONYMOUS_CODING CG7504 DOWNSTREAM CdsA
2L	8496071	2L_8496071_SNP [dm3] 2L_8496071_SNP [dm6]	A	G	7.042e^-6	0.887	SYNONYMOUS_CODING Bace INTRON Dh31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8497308	2L_8497308_SNP [dm3] 2L_8497308_SNP [dm6]	C	T	7.042e^-6	0.887	INTRON Dh31
2L	8497327	2L_8497327_DEL [dm3] 2L_8497327_DEL [dm6]	AA	A	7.042e^-6	0.887	INTRON Dh31
2R	5427803	2R_5427803_DEL [dm3] 2R_9540298_DEL [dm6]	TTATG	T	1.054e^-5	0.887	UTR_3_PRIME brp	TF binding site BDTNP1_TFBS_dl
2R	8911925	2R_8911925_SNP [dm3] 2R_13024420_SNP [dm6]	A	G	1.200e^-5	0.887	INTERGENIC
3L	18492202	3L_18492202_SNP [dm3] 3L_18499102_SNP [dm6]	G	A	1.200e^-5	0.887	INTRON AstC-R2
X	11111178	X_11111178_SNP [dm3] X_11217145_SNP [dm6]	T	C	1.326e^-5	0.887	INTERGENIC
3L	3616586	3L_3616586_SNP [dm3] 3L_3616586_SNP [dm6]	A	G	1.856e^-5	0.887	UTR_3_PRIME CG10357	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	6233279	2R_6233279_SNP [dm3] 2R_10345774_SNP [dm6]	C	T	2.001e^-5	0.887	INTRON CG42732
2R	6233283	2R_6233283_SNP [dm3] 2R_10345778_SNP [dm6]	C	A	2.001e^-5	0.887	INTRON CG42732
X	12380878	X_12380878_SNP [dm3] X_12486845_SNP [dm6]	C	A	2.080e^-5	0.887	UPSTREAM Cpr11A INTERGENIC
2L	814212	2L_814212_SNP [dm3] 2L_814212_SNP [dm6]	T	G	2.177e^-5	0.887	DOWNSTREAM Dbp21E2 INTRON Saf6
X	11656084	X_11656084_SNP [dm3] X_11762051_SNP [dm6]	G	T	2.311e^-5	0.887	INTRON m
2L	6747667	2L_6747667_SNP [dm3] 2L_6747667_SNP [dm6]	G	A	2.444e^-5	0.887	SYNONYMOUS_CODING CG44271 INTRON CG11221
2L	6747691	2L_6747691_SNP [dm3] 2L_6747691_SNP [dm6]	G	C	2.444e^-5	0.887	NON_SYNONYMOUS_CODING CG44271 INTRON CG11221
2L	8638175	2L_8638175_SNP [dm3] 2L_8638175_SNP [dm6]	A	G	2.444e^-5	0.887	INTRON Sema-1a
2R	5427749	2R_5427749_SNP [dm3] 2R_9540244_SNP [dm6]	G	A	2.871e^-5	0.887	UTR_3_PRIME brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19905647	2R_19905647_SNP [dm3] 2R_24018124_SNP [dm6]	A	T	3.148e^-5	0.887	UPSTREAM CG4324 INTRON CG3121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	23211097	3R_23211097_SNP [dm3] 3R_27385375_SNP [dm6]	T	C	3.193e^-5	0.887	INTRON side
3R	25329046	3R_25329046_INS [dm3] 3R_29503324_INS [dm6]	C	CCCGCGAGTGT...	3.505e^-5	0.887	UTR_5_PRIME Trc8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4794246	2L_4794246_SNP [dm3] 2L_4794246_SNP [dm6]	A	C	3.675e^-5	0.887	UPSTREAM CG3294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7063426	2L_7063426_SNP [dm3] 2L_7063426_SNP [dm6]	A	T	3.758e^-5	0.887	UTR_3_PRIME Mnn1 UPSTREAM Sem1 DOWNSTREAM Mnn1	TF binding site mE1_TFBS_cnc
2R	11844909	2R_11844909_SNP [dm3] 2R_15957404_SNP [dm6]	A	G	3.995e^-5	0.887	UPSTREAM Strn-Mlck DOWNSTREAM CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	11844926	2R_11844926_SNP [dm3] 2R_15957421_SNP [dm6]	T	C	3.995e^-5	0.887	UPSTREAM Strn-Mlck DOWNSTREAM CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	5444062	2R_5444062_SNP [dm3] 2R_9556557_SNP [dm6]	T	G	3.995e^-5	0.887	INTERGENIC
2L	2856358	2L_2856358_SNP [dm3] 2L_2856358_SNP [dm6]	C	A	4.047e^-5	0.887	UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2856419	2L_2856419_SNP [dm3] 2L_2856419_SNP [dm6]	C	T	4.047e^-5	0.887	SYNONYMOUS_CODING RpS21 UPSTREAM CG3104 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2856613	2L_2856613_SNP [dm3] 2L_2856613_SNP [dm6]	G	C	4.047e^-5	0.887	UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	2856615	2L_2856615_SNP [dm3] 2L_2856615_SNP [dm6]	A	C	4.047e^-5	0.887	UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	2856623	2L_2856623_SNP [dm3] 2L_2856623_SNP [dm6]	C	T	4.047e^-5	0.887	SPLICE_SITE_REGION RpS21 UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	2856922	2L_2856922_SNP [dm3] 2L_2856922_SNP [dm6]	G	A	4.047e^-5	0.887	UTR_3_PRIME RpS21 UPSTREAM CG2991 DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	2856926	2L_2856926_SNP [dm3] 2L_2856926_SNP [dm6]	T	A	4.047e^-5	0.887	UTR_3_PRIME RpS21 UPSTREAM CG2991 DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	6574229	2L_6574229_SNP [dm3] 2L_6574229_SNP [dm6]	G	A	4.047e^-5	0.887	SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad
3L	13251642	3L_13251642_SNP [dm3] 3L_13258542_SNP [dm6]	G	C	4.161e^-5	0.887	INTRON caps
2R	17434622	2R_17434622_SNP [dm3] 2R_21547117_SNP [dm6]	T	G	4.369e^-5	0.887	START_GAINED Egfr UTR_5_PRIME Egfr INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	2901821	2R_2901821_SNP [dm3] 2R_7014316_SNP [dm6]	T	C	4.369e^-5	0.887	INTRON Tsp42Ee	TF binding site BDTNP1_TFBS_twi
X	11111129	X_11111129_SNP [dm3] X_11217096_SNP [dm6]	T	C	4.501e^-5	0.887	INTERGENIC
X	11691832	X_11691832_INS [dm3] X_11797799_INS [dm6]	G	GA	4.600e^-5	0.887	UTR_3_PRIME CkIIbeta DOWNSTREAM CkIIbeta INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18873449	X_18873449_SNP [dm3] X_18979416_SNP [dm6]	G	T	4.856e^-5	0.887	INTRON CG43759	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	2856331	2L_2856331_SNP [dm3] 2L_2856331_SNP [dm6]	C	G	5.427e^-5	0.887	UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9263286	2L_9263286_INS [dm3] 2L_9263286_INS [dm6]	T	TT	5.427e^-5	0.887	UPSTREAM CR45262 INTRON Ggamma30A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9263384	2L_9263384_SNP [dm3] 2L_9263384_SNP [dm6]	C	T	5.427e^-5	0.887	UPSTREAM CR45262 INTRON Ggamma30A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9542441	2L_9542441_SNP [dm3] 2L_9542441_SNP [dm6]	C	A	5.427e^-5	0.887	UTR_3_PRIME CG17855 UPSTREAM Cpr30B
2R	5427731	2R_5427731_SNP [dm3] 2R_9540226_SNP [dm6]	G	T	5.507e^-5	0.887	UTR_3_PRIME brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7375826	2L_7375826_SNP [dm3] 2L_7375826_SNP [dm6]	T	C	6.027e^-5	0.887	SPLICE_SITE_REGION Wnt10 INTRON Wnt10
3L	9620785	3L_9620785_SNP [dm3] 3L_9627685_SNP [dm6]	A	G	6.216e^-5	0.887	SPLICE_SITE_REGION Or67b UPSTREAM CG8336 DOWNSTREAM CG3335 INTRON Or67b
2L	2836195	2L_2836195_SNP [dm3] 2L_2836195_SNP [dm6]	A	G	6.263e^-5	0.887	INTRON CG3119
2R	11845054	2R_11845054_SNP [dm3] 2R_15957549_SNP [dm6]	A	C	6.389e^-5	0.887	UPSTREAM Strn-Mlck DOWNSTREAM CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	12375429	2R_12375429_SNP [dm3] 2R_16487924_SNP [dm6]	A	C	6.389e^-5	0.887	UPSTREAM CG33459 DOWNSTREAM CG33458 INTERGENIC
3L	16257560	3L_16257560_SNP [dm3] 3L_16264460_SNP [dm6]	G	T	6.472e^-5	0.887	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2L	8793045	2L_8793045_SNP [dm3] 2L_8793045_SNP [dm6]	T	G	6.539e^-5	0.887	INTERGENIC
2R	17436228	2R_17436228_SNP [dm3] 2R_21548723_SNP [dm6]	C	A	6.677e^-5	0.887	INTRON Egfr	TF binding site BDTNP1_TFBS_dl
2R	8911929	2R_8911929_SNP [dm3] 2R_13024424_SNP [dm6]	C	A	6.716e^-5	0.887	INTERGENIC
3R	15327713	3R_15327713_SNP [dm3] 3R_19501991_SNP [dm6]	G	T	6.716e^-5	0.887	INTRON Dys
3R	18328932	3R_18328932_SNP [dm3] 3R_22503210_SNP [dm6]	T	A	6.716e^-5	0.887	INTRON Octbeta1R
3R	25265193	3R_25265193_SNP [dm3] 3R_29439471_SNP [dm6]	A	T	6.716e^-5	0.887	INTRON Ptp99A
X	2662384	X_2662384_INS [dm3] X_2768351_INS [dm6]	G	TT	6.770e^-5	0.887	INTRON kirre
2R	11419011	2R_11419011_SNP [dm3] 2R_15531506_SNP [dm6]	A	G	7.267e^-5	0.887	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6812461	3L_6812461_SNP [dm3] 3L_6819361_SNP [dm6]	A	G	7.412e^-5	0.887	INTERGENIC
3L	14527380	3L_14527380_SNP [dm3] 3L_14534280_SNP [dm6]	G	C	7.451e^-5	0.887	INTRON bbg	TF binding site mE1_TFBS_Trl
3L	580741	3L_580741_SNP [dm3] 3L_580741_SNP [dm6]	G	C	7.661e^-5	0.887	UTR_3_PRIME hipk UPSTREAM Ppm1
3R	11963755	3R_11963755_SNP [dm3] 3R_16138033_SNP [dm6]	G	C	7.661e^-5	0.887	INTRON Sb	TF binding site mE1_TFBS_inv
3R	11963785	3R_11963785_SNP [dm3] 3R_16138063_SNP [dm6]	T	C	7.661e^-5	0.887	INTRON Sb	TF binding site mE1_TFBS_inv
3R	11963825	3R_11963825_INS [dm3] 3R_16138103_INS [dm6]	G	GAATG	7.661e^-5	0.887	INTRON Sb	TF binding site mE1_TFBS_inv
2L	4732858	2L_4732858_SNP [dm3] 2L_4732858_SNP [dm6]	T	G	7.677e^-5	0.887	SYNONYMOUS_CODING CG15631
2R	14148260	2R_14148260_SNP [dm3] 2R_18260755_SNP [dm6]	G	A	7.989e^-5	0.887	INTERGENIC
2R	14148351	2R_14148351_SNP [dm3] 2R_18260846_SNP [dm6]	C	G	7.989e^-5	0.887	INTERGENIC
3L	6812342	3L_6812342_SNP [dm3] 3L_6819242_SNP [dm6]	C	G	7.989e^-5	0.887	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	6812351	3L_6812351_SNP [dm3] 3L_6819251_SNP [dm6]	T	G	7.989e^-5	0.887	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	6812354	3L_6812354_SNP [dm3] 3L_6819254_SNP [dm6]	G	T	7.989e^-5	0.887	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	6812388	3L_6812388_SNP [dm3] 3L_6819288_SNP [dm6]	A	T	7.989e^-5	0.887	INTERGENIC
3L	6812452	3L_6812452_INS [dm3] 3L_6819352_INS [dm6]	A	AA	7.989e^-5	0.887	INTERGENIC
3L	6812457	3L_6812457_SNP [dm3] 3L_6819357_SNP [dm6]	G	T	7.989e^-5	0.887	INTERGENIC
3L	6812472	3L_6812472_SNP [dm3] 3L_6819372_SNP [dm6]	C	T	7.989e^-5	0.887	INTERGENIC
2R	19973851	2R_19973851_SNP [dm3] 2R_24086328_SNP [dm6]	G	C	8.159e^-5	0.887	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	2856583	2L_2856583_SNP [dm3] 2L_2856583_SNP [dm6]	G	A	8.366e^-5	0.887	UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other INTRON RpS21	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14148331	2R_14148331_SNP [dm3] 2R_18260826_SNP [dm6]	A	C	8.414e^-5	0.887	INTERGENIC
3L	14070697	3L_14070697_SNP [dm3] 3L_14077597_SNP [dm6]	G	A	8.537e^-5	0.887	INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	2819145	2L_2819145_SNP [dm3] 2L_2819145_SNP [dm6]	A	G	8.606e^-5	0.887	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18704146	3R_18704146_SNP [dm3] 3R_22878424_SNP [dm6]	T	G	8.622e^-5	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14268854	2R_14268854_SNP [dm3] 2R_18381349_SNP [dm6]	T	C	8.638e^-5	0.887	DOWNSTREAM CG43202 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13334423	3L_13334423_DEL [dm3] 3L_13341323_DEL [dm6]	AACTGCCTCGCTTTA...	A	8.855e^-5	0.887	INTERGENIC
2L	7189211	2L_7189211_SNP [dm3] 2L_7189211_SNP [dm6]	G	C	9.273e^-5	0.887	INTRON CG4496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	12254748	2R_12254748_SNP [dm3] 2R_16367243_SNP [dm6]	G	A	9.298e^-5	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14868271	3L_14868271_SNP [dm3] 3L_14875171_SNP [dm6]	A	T	9.298e^-5	0.887	INTRON CG17839
2L	3347848	2L_3347848_SNP [dm3] 2L_3347848_SNP [dm6]	T	C	9.310e^-5	0.887	INTRON E23
3R	12386818	3R_12386818_SNP [dm3] 3R_16561096_SNP [dm6]	T	C	9.411e^-5	0.887	INTRON CG42342
3R	25168907	3R_25168907_SNP [dm3] 3R_29343185_SNP [dm6]	G	A	9.411e^-5	0.887	INTERGENIC
3R	3621128	3R_3621128_SNP [dm3] 3R_7795406_SNP [dm6]	C	T	9.411e^-5	0.887	INTRON CG2641
2R	11416270	2R_11416270_SNP [dm3] 2R_15528765_SNP [dm6]	G	T	9.842e^-5	0.887	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16328620	3R_16328620_SNP [dm3] 3R_20502898_SNP [dm6]	G	A	1.016e^-4	0.887	UPSTREAM Dic2 DOWNSTREAM MtnB INTERGENIC
2L	2056888	2L_2056888_SNP [dm3] 2L_2056888_SNP [dm6]	A	T	1.048e^-4	0.887	INTRON Or22c
2R	10509199	2R_10509199_SNP [dm3] 2R_14621694_SNP [dm6]	G	A	1.048e^-4	0.887	UPSTREAM snoRNA:Me18S-C1366 & 4 others EXON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_zfh1
2R	13132622	2R_13132622_SNP [dm3] 2R_17245117_SNP [dm6]	A	G	1.048e^-4	0.887	DOWNSTREAM CG18469 INTRON mbl
2R	16071977	2R_16071977_SNP [dm3] 2R_20184472_SNP [dm6]	G	T	1.048e^-4	0.887	INTERGENIC
2R	16073579	2R_16073579_SNP [dm3] 2R_20186074_SNP [dm6]	C	T	1.048e^-4	0.887	INTERGENIC
2R	16073673	2R_16073673_SNP [dm3] 2R_20186168_SNP [dm6]	T	G	1.048e^-4	0.887	INTERGENIC
2R	16073708	2R_16073708_SNP [dm3] 2R_20186203_SNP [dm6]	G	T	1.048e^-4	0.887	INTERGENIC
2R	16073709	2R_16073709_SNP [dm3] 2R_20186204_SNP [dm6]	T	C	1.048e^-4	0.887	INTERGENIC
2R	16073735	2R_16073735_SNP [dm3] 2R_20186230_SNP [dm6]	T	G	1.048e^-4	0.887	INTERGENIC
2R	16294631	2R_16294631_SNP [dm3] 2R_20407126_SNP [dm6]	A	G	1.048e^-4	0.887	INTERGENIC
2R	16294644	2R_16294644_SNP [dm3] 2R_20407139_SNP [dm6]	T	G	1.048e^-4	0.887	INTERGENIC
2R	16294892	2R_16294892_SNP [dm3] 2R_20407387_SNP [dm6]	T	C	1.048e^-4	0.887	INTERGENIC
2R	18369447	2R_18369447_SNP [dm3] 2R_22481942_SNP [dm6]	C	T	1.048e^-4	0.887	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18824577	2R_18824577_SNP [dm3] 2R_22937054_SNP [dm6]	A	T	1.048e^-4	0.887	UTR_5_PRIME CG3800 UPSTREAM CG9849 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	19693106	2R_19693106_SNP [dm3] 2R_23805583_SNP [dm6]	G	C	1.048e^-4	0.887	NON_SYNONYMOUS_CODING CG5539 DOWNSTREAM Ssrp INTRON CG13561	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19693133	2R_19693133_SNP [dm3] 2R_23805610_SNP [dm6]	A	G	1.048e^-4	0.887	SYNONYMOUS_CODING CG5539 DOWNSTREAM Ssrp INTRON CG13561	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15420696	3L_15420696_SNP [dm3] 3L_15427596_SNP [dm6]	C	A	1.048e^-4	0.887	INTERGENIC
3L	5433463	3L_5433463_SNP [dm3] 3L_5440363_SNP [dm6]	G	C	1.048e^-4	0.887	UTR_3_PRIME CG34391 DOWNSTREAM CG34391
3L	8578819	3L_8578819_SNP [dm3] 3L_8585719_SNP [dm6]	A	T	1.048e^-4	0.887	INTRON CG43078
3L	8583028	3L_8583028_INS [dm3] 3L_8589928_INS [dm6]	T	TT	1.048e^-4	0.887	UPSTREAM CG43078 INTRON CG43078
3L	8584652	3L_8584652_SNP [dm3] 3L_8591552_SNP [dm6]	C	T	1.048e^-4	0.887	SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9886121	3L_9886121_SNP [dm3] 3L_9893021_SNP [dm6]	G	A	1.048e^-4	0.887	UTR_3_PRIME CalpB DOWNSTREAM CG6709 & 2 others
3L	9886140	3L_9886140_SNP [dm3] 3L_9893040_SNP [dm6]	G	A	1.048e^-4	0.887	UTR_3_PRIME CalpB DOWNSTREAM CG6709 & 2 others
3R	26544554	3R_26544554_INS [dm3] 3R_30718832_INS [dm6]	A	AC	1.048e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	17549505	X_17549505_SNP [dm3] X_17655472_SNP [dm6]	T	G	1.048e^-4	0.887	INTRON IntS2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9027296	X_9027296_SNP [dm3] X_9133263_SNP [dm6]	C	G	1.048e^-4	0.887	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	9027298	X_9027298_DEL [dm3] X_9133265_DEL [dm6]	TT	T	1.048e^-4	0.887	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	9027319	X_9027319_SNP [dm3] X_9133286_SNP [dm6]	C	T	1.048e^-4	0.887	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	14900801	2R_14900801_SNP [dm3] 2R_19013296_SNP [dm6]	T	C	1.053e^-4	0.887	INTERGENIC
X	19085582	X_19085582_SNP [dm3] X_19191549_SNP [dm6]	A	G	1.053e^-4	0.887	DOWNSTREAM HP1D3csd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	8430554	X_8430554_SNP [dm3] X_8536521_SNP [dm6]	T	C	1.053e^-4	0.887	INTRON Nrg
3L	6812471	3L_6812471_SNP [dm3] 3L_6819371_SNP [dm6]	T	C	1.073e^-4	0.887	INTERGENIC
2R	9518803	2R_9518803_SNP [dm3] 2R_13631298_SNP [dm6]	T	C	1.085e^-4	0.887	INTRON fas
2R	9444999	2R_9444999_SNP [dm3] 2R_13557494_SNP [dm6]	T	C	1.096e^-4	0.887	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	4135877	2R_4135877_SNP [dm3] 2R_8248372_SNP [dm6]	A	C	1.111e^-4	0.887	DOWNSTREAM CG44439 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	10555481	2L_10555481_SNP [dm3] 2L_10555481_SNP [dm6]	C	T	1.113e^-4	0.887	INTRON Trim9	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9274987	2L_9274987_SNP [dm3] 2L_9274987_SNP [dm6]	G	T	1.113e^-4	0.887	INTRON Ggamma30A
3R	19533175	3R_19533175_SNP [dm3] 3R_23707453_SNP [dm6]	T	C	1.125e^-4	0.887	UPSTREAM CR44052 INTRON CG31414
3R	19533176	3R_19533176_DEL [dm3] 3R_23707454_DEL [dm6]	CT	C	1.125e^-4	0.887	UPSTREAM CR44052 INTRON CG31414
3L	14334561	3L_14334561_SNP [dm3] 3L_14341461_SNP [dm6]	T	A	1.129e^-4	0.887	INTRON fz	TF binding site BDTNP1_TFBS_dl
3L	5658856	3L_5658856_SNP [dm3] 3L_5665756_SNP [dm6]	T	C	1.129e^-4	0.887	UTR_5_PRIME sif INTRON sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8805340	3L_8805340_SNP [dm3] 3L_8812240_SNP [dm6]	T	A	1.129e^-4	0.887	DOWNSTREAM CG13309 INTERGENIC
2L	2856844	2L_2856844_SNP [dm3] 2L_2856844_SNP [dm6]	A	G	1.169e^-4	0.887	UTR_3_PRIME RpS21 UPSTREAM CG2991 DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
3L	10820411	3L_10820411_SNP [dm3] 3L_10827311_SNP [dm6]	T	C	1.172e^-4	0.887	INTERGENIC
X	20333576	X_20333576_SNP [dm3] X_20462549_SNP [dm6]	T	A	1.172e^-4	0.887	SYNONYMOUS_CODING CG32506	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	20338458	X_20338458_SNP [dm3] X_20467431_SNP [dm6]	A	T	1.172e^-4	0.887	UPSTREAM GstT3 DOWNSTREAM CG32506 INTERGENIC
X	2922909	X_2922909_SNP [dm3] X_3028876_SNP [dm6]	G	A	1.172e^-4	0.887	INTRON kirre
X	2922920	X_2922920_SNP [dm3] X_3028887_SNP [dm6]	C	T	1.172e^-4	0.887	INTRON kirre
2L	21916487	2L_21916487_SNP [dm3] 2L_21916487_SNP [dm6]	T	A	1.191e^-4	0.887	NON_SYNONYMOUS_CODING CG11634
2L	5916509	2L_5916509_SNP [dm3] 2L_5916509_SNP [dm6]	C	T	1.202e^-4	0.887	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_chinmo
2L	7375758	2L_7375758_SNP [dm3] 2L_7375758_SNP [dm6]	G	A	1.203e^-4	0.887	SYNONYMOUS_CODING Wnt10
2L	2856657	2L_2856657_SNP [dm3] 2L_2856657_SNP [dm6]	G	C	1.219e^-4	0.887	UTR_3_PRIME RpS21 UPSTREAM CG3104 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
X	14504103	X_14504103_SNP [dm3] X_14610070_SNP [dm6]	G	A	1.228e^-4	0.887	INTRON NetA
3L	3783026	3L_3783026_SNP [dm3] 3L_3783026_SNP [dm6]	C	A	1.230e^-4	0.887	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	6259241	2L_6259241_SNP [dm3] 2L_6259241_SNP [dm6]	G	A	1.236e^-4	0.887	INTRON Ddr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12050524	3L_12050524_SNP [dm3] 3L_12057424_SNP [dm6]	T	A	1.236e^-4	0.887	UPSTREAM rols INTRON rols	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3893708	X_3893708_SNP [dm3] X_3999675_SNP [dm6]	G	C	1.239e^-4	0.887	INTERGENIC
3L	7956155	3L_7956155_SNP [dm3] 3L_7963055_SNP [dm6]	C	A	1.253e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3320552	2L_3320552_SNP [dm3] 2L_3320552_SNP [dm6]	T	C	1.270e^-4	0.887	UTR_5_PRIME CG8837 UPSTREAM CG3326
3L	5992659	3L_5992659_SNP [dm3] 3L_5999559_SNP [dm6]	G	A	1.270e^-4	0.887	INTRON PVRAP
X	18375851	X_18375851_SNP [dm3] X_18481818_SNP [dm6]	C	T	1.271e^-4	0.887	SYNONYMOUS_CODING Hayan DOWNSTREAM CR45714 INTRON Hayan	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14829020	X_14829020_SNP [dm3] X_14934987_SNP [dm6]	G	C	1.279e^-4	0.887	SYNONYMOUS_CODING pdgy	TF binding site mE1_TFBS_sens
3L	7147165	3L_7147165_SNP [dm3] 3L_7154065_SNP [dm6]	C	T	1.289e^-4	0.887	INTRON corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5431564	3L_5431564_INS [dm3] 3L_5438464_INS [dm6]	C	CACTCTC	1.292e^-4	0.887	INTRON CG34391
3L	6812407	3L_6812407_SNP [dm3] 3L_6819307_SNP [dm6]	A	T	1.311e^-4	0.887	INTERGENIC
3L	1884972	3L_1884972_SNP [dm3] 3L_1884972_SNP [dm6]	C	T	1.375e^-4	0.887	UTR_5_PRIME Aprt UPSTREAM Tmhs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4978489	3L_4978489_SNP [dm3] 3L_4978489_SNP [dm6]	A	G	1.398e^-4	0.887	INTRON Con
3L	17809734	3L_17809734_SNP [dm3] 3L_17816634_SNP [dm6]	T	A	1.399e^-4	0.887	NON_SYNONYMOUS_CODING Ir75a
2L	3609830	2L_3609830_SNP [dm3] 2L_3609830_SNP [dm6]	T	C	1.426e^-4	0.887	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	4978443	3L_4978443_SNP [dm3] 3L_4978443_SNP [dm6]	T	G	1.440e^-4	0.887	INTRON Con
3L	8913789	3L_8913789_SNP [dm3] 3L_8920689_SNP [dm6]	A	T	1.442e^-4	0.887	INTRON Tsp66E
2L	15419672	2L_15419672_SNP [dm3] 2L_15419672_SNP [dm6]	C	T	1.515e^-4	0.887	INTERGENIC
2L	8792644	2L_8792644_SNP [dm3] 2L_8792644_SNP [dm6]	C	T	1.540e^-4	0.887	INTERGENIC
3R	22848917	3R_22848917_SNP [dm3] 3R_27023195_SNP [dm6]	C	T	1.564e^-4	0.887	UTR_5_PRIME CG6277 INTRON RYa-R
3R	22848918	3R_22848918_SNP [dm3] 3R_27023196_SNP [dm6]	G	A	1.564e^-4	0.887	START_GAINED CG6277 UTR_5_PRIME CG6277 INTRON RYa-R
2R	6228370	2R_6228370_SNP [dm3] 2R_10340865_SNP [dm6]	C	T	1.610e^-4	0.887	INTRON CG42732
2L	12263200	2L_12263200_SNP [dm3] 2L_12263200_SNP [dm6]	T	G	1.611e^-4	0.887	INTRON aret
2L	1639762	2L_1639762_SNP [dm3] 2L_1639762_SNP [dm6]	C	T	1.611e^-4	0.887	INTERGENIC
2L	2860293	2L_2860293_SNP [dm3] 2L_2860293_SNP [dm6]	T	A	1.611e^-4	0.887	INTRON CG2991	TF binding site mE1_TFBS_inv
2L	8534532	2L_8534532_SNP [dm3] 2L_8534532_SNP [dm6]	A	G	1.611e^-4	0.887	INTRON CG17834	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	5431562	3L_5431562_SNP [dm3] 3L_5438462_SNP [dm6]	C	T	1.644e^-4	0.887	INTRON CG34391
2R	10716148	2R_10716148_SNP [dm3] 2R_14828643_SNP [dm6]	A	G	1.685e^-4	0.887	INTERGENIC
2R	11442766	2R_11442766_SNP [dm3] 2R_15555261_SNP [dm6]	C	G	1.685e^-4	0.887	UPSTREAM CG12963 INTERGENIC
3L	11689705	3L_11689705_SNP [dm3] 3L_11696605_SNP [dm6]	G	C	1.685e^-4	0.887	UPSTREAM CG11652 DOWNSTREAM CG6053 INTRON CG11652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	11689706	3L_11689706_SNP [dm3] 3L_11696606_SNP [dm6]	A	G	1.685e^-4	0.887	UPSTREAM CG11652 DOWNSTREAM CG6053 INTRON CG11652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	13316069	3L_13316069_SNP [dm3] 3L_13322969_SNP [dm6]	C	A	1.685e^-4	0.887	INTERGENIC
3L	8577664	3L_8577664_SNP [dm3] 3L_8584564_SNP [dm6]	G	A	1.705e^-4	0.887	UPSTREAM CG43078 INTRON CG43078
2R	11415155	2R_11415155_SNP [dm3] 2R_15527650_SNP [dm6]	C	T	1.714e^-4	0.887	SYNONYMOUS_CODING Khc-73	TF binding site BDTNP1_TFBS_dl
2R	11416422	2R_11416422_SNP [dm3] 2R_15528917_SNP [dm6]	T	C	1.714e^-4	0.887	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9223321	3R_9223321_SNP [dm3] 3R_13397599_SNP [dm6]	G	A	1.724e^-4	0.887	UPSTREAM CG14377 & 1 other DOWNSTREAM CG9796 INTERGENIC
2L	14039815	2L_14039815_SNP [dm3] 2L_14039815_SNP [dm6]	C	T	1.756e^-4	0.887	UPSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	10520198	3L_10520198_SNP [dm3] 3L_10527098_SNP [dm6]	G	A	1.763e^-4	0.887	INTRON A2bp1
3R	26538524	3R_26538524_SNP [dm3] 3R_30712802_SNP [dm6]	C	T	1.770e^-4	0.887	INTERGENIC
3L	5820932	3L_5820932_SNP [dm3] 3L_5827832_SNP [dm6]	A	T	1.771e^-4	0.887	INTRON vn
3R	3274067	3R_3274067_SNP [dm3] 3R_7448345_SNP [dm6]	G	A	1.790e^-4	0.887	INTERGENIC
3R	21751952	3R_21751952_SNP [dm3] 3R_25926230_SNP [dm6]	A	G	1.793e^-4	0.887	INTRON CCAP-R
X	20333495	X_20333495_SNP [dm3] X_20462468_SNP [dm6]	A	C	1.807e^-4	0.887	SYNONYMOUS_CODING CG32506	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6567218	2L_6567218_SNP [dm3] 2L_6567218_SNP [dm6]	T	C	1.819e^-4	0.887	INTERGENIC
2R	16294650	2R_16294650_SNP [dm3] 2R_20407145_SNP [dm6]	G	A	1.831e^-4	0.887	INTERGENIC
2R	16294653	2R_16294653_SNP [dm3] 2R_20407148_SNP [dm6]	G	C	1.831e^-4	0.887	INTERGENIC
X	16997254	X_16997254_SNP [dm3] X_17103221_SNP [dm6]	C	T	1.831e^-4	0.887	SYNONYMOUS_CODING CG4991
2L	6589467	2L_6589467_SNP [dm3] 2L_6589467_SNP [dm6]	C	G	1.857e^-4	0.887	INTRON CG11319
2L	6566375	2L_6566375_SNP [dm3] 2L_6566375_SNP [dm6]	G	C	1.860e^-4	0.887	UPSTREAM CG13766 INTERGENIC
2R	18813149	2R_18813149_SNP [dm3] 2R_22925626_SNP [dm6]	G	A	1.873e^-4	0.887	UPSTREAM Nup214 & 1 other INTRON CG42678	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18813162	2R_18813162_SNP [dm3] 2R_22925639_SNP [dm6]	G	A	1.873e^-4	0.887	UPSTREAM Nup214 & 1 other INTRON CG42678	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18813170	2R_18813170_SNP [dm3] 2R_22925647_SNP [dm6]	C	A	1.873e^-4	0.887	UPSTREAM Nup214 & 1 other INTRON CG42678	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14993536	3L_14993536_INS [dm3] 3L_15000436_INS [dm6]	A	AAAA	1.873e^-4	0.887	UPSTREAM mRpL39 DOWNSTREAM Reck INTRON Prosbeta2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
X	2923226	X_2923226_SNP [dm3] X_3029193_SNP [dm6]	G	T	1.873e^-4	0.887	INTRON kirre
3R	25168923	3R_25168923_SNP [dm3] 3R_29343201_SNP [dm6]	A	T	1.883e^-4	0.887	INTERGENIC
2L	814505	2L_814505_SNP [dm3] 2L_814505_SNP [dm6]	G	C	1.899e^-4	0.887	SYNONYMOUS_CODING Saf6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6140895	2L_6140895_SNP [dm3] 2L_6140895_SNP [dm6]	C	T	1.963e^-4	0.887	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6140901	2L_6140901_SNP [dm3] 2L_6140901_SNP [dm6]	G	T	1.963e^-4	0.887	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17067574	3R_17067574_SNP [dm3] 3R_21241852_SNP [dm6]	C	T	1.967e^-4	0.887	UPSTREAM CG5892 INTERGENIC	regulatory region REDfly_CRMs
3R	6977574	3R_6977574_SNP [dm3] 3R_11151852_SNP [dm6]	C	A	1.967e^-4	0.887	UTR_3_PRIME Ugt86Di DOWNSTREAM Ugt86Di
2R	14939481	2R_14939481_SNP [dm3] 2R_19051976_SNP [dm6]	C	T	1.979e^-4	0.887	INTERGENIC
X	6388208	X_6388208_SNP [dm3] X_6494175_SNP [dm6]	G	A	1.979e^-4	0.887	INTRON CG42340
3L	2445295	3L_2445295_SNP [dm3] 3L_2445295_SNP [dm6]	C	T	2.089e^-4	0.887	SYNONYMOUS_CODING CG45186	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20338367	X_20338367_SNP [dm3] X_20467340_SNP [dm6]	G	A	2.090e^-4	0.887	UPSTREAM GstT3 DOWNSTREAM CG32506 INTERGENIC
3R	3023399	3R_3023399_SNP [dm3] 3R_7197677_SNP [dm6]	C	G	2.116e^-4	0.887	INTRON lap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1290595	3L_1290595_SNP [dm3] 3L_1290595_SNP [dm6]	T	G	2.116e^-4	0.887	NON_SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17065650	3R_17065650_SNP [dm3] 3R_21239928_SNP [dm6]	T	G	2.116e^-4	0.887	INTERGENIC	regulatory region REDfly_CRMs
X	20340275	X_20340275_SNP [dm3] X_20469248_SNP [dm6]	C	T	2.126e^-4	0.887	NON_SYNONYMOUS_CODING GstT3 DOWNSTREAM RhoGAP19D	TF binding site mE1_TFBS_HSA
2R	17025724	2R_17025724_SNP [dm3] 2R_21138219_SNP [dm6]	G	C	2.165e^-4	0.887	SPLICE_SITE_REGION Magi INTRON Magi	TF binding site mE1_TFBS_chinmo
3R	20823341	3R_20823341_SNP [dm3] 3R_24997619_SNP [dm6]	G	A	2.167e^-4	0.887	INTRON tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20391131	X_20391131_SNP [dm3] X_20520104_SNP [dm6]	T	G	2.167e^-4	0.887	INTRON Tak1
2L	9122369	2L_9122369_SNP [dm3] 2L_9122369_SNP [dm6]	T	C	2.227e^-4	0.887	UPSTREAM CR44616 INTERGENIC
2L	13618702	2L_13618702_SNP [dm3] 2L_13618702_SNP [dm6]	T	G	2.244e^-4	0.887	INTRON kuz
2R	17730851	2R_17730851_SNP [dm3] 2R_21843346_SNP [dm6]	T	C	2.244e^-4	0.887	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10322880	2L_10322880_SNP [dm3] 2L_10322880_SNP [dm6]	T	C	2.310e^-4	0.887	UPSTREAM CG4995 INTRON CG5381 & 1 other
3L	5427739	3L_5427739_SNP [dm3] 3L_5434639_SNP [dm6]	G	A	2.319e^-4	0.887	INTRON CG34391
X	8940282	X_8940282_SNP [dm3] X_9046249_SNP [dm6]	T	G	2.349e^-4	0.887	INTRON CR43836 & 1 other
3L	4083161	3L_4083161_SNP [dm3] 3L_4083161_SNP [dm6]	T	G	2.350e^-4	0.887	INTRON Gad1
2R	13956042	2R_13956042_SNP [dm3] 2R_18068537_SNP [dm6]	G	A	2.384e^-4	0.887	INTRON CG34386
X	2662396	X_2662396_SNP [dm3] X_2768363_SNP [dm6]	T	C	2.415e^-4	0.887	INTRON kirre
3R	22894759	3R_22894759_SNP [dm3] 3R_27069037_SNP [dm6]	T	C	2.435e^-4	0.887	INTRON spz
2L	16406693	2L_16406693_SNP [dm3] 2L_16406693_SNP [dm6]	T	G	2.446e^-4	0.887	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20567004	3L_20567004_SNP [dm3] 3L_20573904_SNP [dm6]	C	G	2.448e^-4	0.887	INTERGENIC
3L	18578065	3L_18578065_SNP [dm3] 3L_18584965_SNP [dm6]	A	G	2.465e^-4	0.887	DOWNSTREAM CR45435 INTERGENIC
2R	16186587	2R_16186587_SNP [dm3] 2R_20299082_SNP [dm6]	G	T	2.468e^-4	0.887	INTERGENIC
X	10487234	X_10487234_SNP [dm3] X_10593201_SNP [dm6]	G	A	2.468e^-4	0.887	NON_SYNONYMOUS_CODING Hmr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9122445	2L_9122445_SNP [dm3] 2L_9122445_SNP [dm6]	C	G	2.471e^-4	0.887	UPSTREAM CR44616 INTERGENIC
2R	17722253	2R_17722253_SNP [dm3] 2R_21834748_SNP [dm6]	G	A	2.476e^-4	0.887	SYNONYMOUS_CODING CG4363 DOWNSTREAM CG4377
3R	11963786	3R_11963786_SNP [dm3] 3R_16138064_SNP [dm6]	G	T	2.485e^-4	0.887	INTRON Sb	TF binding site mE1_TFBS_inv
2L	3457979	2L_3457979_SNP [dm3] 2L_3457979_SNP [dm6]	A	G	2.485e^-4	0.887	SYNONYMOUS_CODING Sec5 UPSTREAM Cog3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	25370839	3R_25370839_SNP [dm3] 3R_29545117_SNP [dm6]	G	A	2.515e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8798398	2L_8798398_SNP [dm3] 2L_8798398_SNP [dm6]	C	G	2.530e^-4	0.887	INTERGENIC
3L	2431623	3L_2431623_SNP [dm3] 3L_2431623_SNP [dm6]	C	T	2.534e^-4	0.887	INTRON CG45186
3R	22746590	3R_22746590_SNP [dm3] 3R_26920868_SNP [dm6]	T	G	2.534e^-4	0.887	INTRON sda
3L	1589351	3L_1589351_SNP [dm3] 3L_1589351_SNP [dm6]	G	C	2.547e^-4	0.887	INTRON CG13917
3L	11668283	3L_11668283_DEL [dm3] 3L_11675183_DEL [dm6]	TGTGGCAGCG	A	2.576e^-4	0.887		TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22069813	3R_22069813_SNP [dm3] 3R_26244091_SNP [dm6]	A	C	2.589e^-4	0.887	INTRON CR42745
2L	12981795	2L_12981795_SNP [dm3] 2L_12981795_SNP [dm6]	A	C	2.614e^-4	0.887	DOWNSTREAM Vha68-3 INTERGENIC
3R	13073632	3R_13073632_DEL [dm3] 3R_17247910_DEL [dm6]	TGCTGCC	T	2.636e^-4	0.887	UTR_5_PRIME beat-IIb UPSTREAM beat-IIb
2R	7151349	2R_7151349_SNP [dm3] 2R_11263844_SNP [dm6]	T	A	2.673e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	7795211	3L_7795211_DEL [dm3] 3L_7802111_DEL [dm6]	TATAT	T	2.690e^-4	0.887	INTRON CG32369
2R	16071915	2R_16071915_SNP [dm3] 2R_20184410_SNP [dm6]	C	A	2.698e^-4	0.887	INTERGENIC
2R	17011357	2R_17011357_SNP [dm3] 2R_21123852_SNP [dm6]	C	T	2.698e^-4	0.887	UTR_3_PRIME CG4050 DOWNSTREAM ktub
3L	9046291	3L_9046291_SNP [dm3] 3L_9053191_SNP [dm6]	C	T	2.714e^-4	0.887	INTRON Argk	TF binding site mE1_TFBS_HSA
3L	9255389	3L_9255389_SNP [dm3] 3L_9262289_SNP [dm6]	C	T	2.714e^-4	0.887	INTRON GluRIB	TF binding site BDTNP1_TFBS_twi
X	14072110	X_14072110_SNP [dm3] X_14178077_SNP [dm6]	T	A	2.714e^-4	0.887	UTR_3_PRIME CG11581 DOWNSTREAM CG11581
2L	5923065	2L_5923065_SNP [dm3] 2L_5923065_SNP [dm6]	A	G	2.732e^-4	0.887	UTR_3_PRIME CG9016 DOWNSTREAM bchs
3L	12042901	3L_12042901_INS [dm3] 3L_12049801_INS [dm6]	C	CACGTACTGC	2.737e^-4	0.887	INTRON rols
2L	6559264	2L_6559264_INS [dm3] 2L_6559264_INS [dm6]	A	AT	2.742e^-4	0.887	UTR_3_PRIME CoVb UPSTREAM CG11043 DOWNSTREAM CG9596 & 1 other
3L	8585351	3L_8585351_SNP [dm3] 3L_8592251_SNP [dm6]	C	G	2.750e^-4	0.887	SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15673321	3L_15673321_SNP [dm3] 3L_15680221_SNP [dm6]	A	C	2.756e^-4	0.887	NON_SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA
3L	15673342	3L_15673342_SNP [dm3] 3L_15680242_SNP [dm6]	C	T	2.756e^-4	0.887	NON_SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15673346	3L_15673346_SNP [dm3] 3L_15680246_SNP [dm6]	C	G	2.756e^-4	0.887	NON_SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15673355	3L_15673355_SNP [dm3] 3L_15680255_SNP [dm6]	G	A	2.756e^-4	0.887	NON_SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3346461	2L_3346461_SNP [dm3] 2L_3346461_SNP [dm6]	A	G	2.799e^-4	0.887	INTRON E23
2L	1958840	2L_1958840_SNP [dm3] 2L_1958840_SNP [dm6]	G	A	2.800e^-4	0.887	INTRON erm	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3740451	2L_3740451_SNP [dm3] 2L_3740451_SNP [dm6]	G	A	2.800e^-4	0.887	INTRON CG10019
2L	8255578	2L_8255578_SNP [dm3] 2L_8255578_SNP [dm6]	A	T	2.800e^-4	0.887	INTRON CG8086
2L	8255579	2L_8255579_SNP [dm3] 2L_8255579_SNP [dm6]	A	G	2.800e^-4	0.887	INTRON CG8086
2L	8255658	2L_8255658_DEL [dm3] 2L_8255658_DEL [dm6]	ATCATCG	C	2.800e^-4	0.887	INTRON CG8086
3L	3991828	3L_3991828_SNP [dm3] 3L_3991828_SNP [dm6]	T	G	2.802e^-4	0.887	UTR_3_PRIME scrt
X	12295409	X_12295409_SNP [dm3] X_12401376_SNP [dm6]	G	C	2.808e^-4	0.887	INTERGENIC
3L	3270808	3L_3270808_SNP [dm3] 3L_3270808_SNP [dm6]	C	A	2.810e^-4	0.887	UPSTREAM CG14960 INTERGENIC
2L	15320319	2L_15320319_SNP [dm3] 2L_15320319_SNP [dm6]	C	G	2.879e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9092961	2R_9092961_SNP [dm3] 2R_13205456_SNP [dm6]	C	A	2.890e^-4	0.887	UPSTREAM lat INTRON lat & 1 other	TF binding site BDTNP1_TFBS_dl
3L	866873	3L_866873_SNP [dm3] 3L_866873_SNP [dm6]	T	A	2.897e^-4	0.887	INTRON CG12502	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2856891	2L_2856891_DEL [dm3] 2L_2856891_DEL [dm6]	TAATT	T	2.934e^-4	0.887	UTR_3_PRIME RpS21 UPSTREAM CG2991 DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2R	11653566	2R_11653566_SNP [dm3] 2R_15766061_SNP [dm6]	T	G	2.938e^-4	0.887	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15744711	3R_15744711_SNP [dm3] 3R_19918989_SNP [dm6]	C	T	2.942e^-4	0.887	SYNONYMOUS_CODING CG4770
3R	19533182	3R_19533182_SNP [dm3] 3R_23707460_SNP [dm6]	T	A	2.942e^-4	0.887	UPSTREAM CR44052 INTRON CG31414
2L	7375732	2L_7375732_SNP [dm3] 2L_7375732_SNP [dm6]	C	A	2.950e^-4	0.887	SYNONYMOUS_CODING Wnt10
3R	11963731	3R_11963731_SNP [dm3] 3R_16138009_SNP [dm6]	A	G	2.978e^-4	0.887	INTRON Sb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3297604	3L_3297604_SNP [dm3] 3L_3297604_SNP [dm6]	C	T	2.984e^-4	0.887	SYNONYMOUS_CODING CG12009
2L	2006934	2L_2006934_SNP [dm3] 2L_2006934_SNP [dm6]	T	G	3.001e^-4	0.887	SYNONYMOUS_CODING CG15353 UPSTREAM CG33543 EXON CR45712
2L	5466076	2L_5466076_SNP [dm3] 2L_5466076_SNP [dm6]	G	A	3.012e^-4	0.887	SYNONYMOUS_CODING mid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11845329	2R_11845329_SNP [dm3] 2R_15957824_SNP [dm6]	C	T	3.040e^-4	0.887	SYNONYMOUS_CODING Strn-Mlck UPSTREAM Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11826323	2L_11826323_SNP [dm3] 2L_11826323_SNP [dm6]	A	C	3.051e^-4	0.887	DOWNSTREAM esc INTRON Pde1c
2L	13095214	2L_13095214_SNP [dm3] 2L_13095214_SNP [dm6]	T	A	3.051e^-4	0.887	INTERGENIC
2L	2006878	2L_2006878_DEL [dm3] 2L_2006878_DEL [dm6]	TG	T	3.051e^-4	0.887	UTR_3_PRIME CG15353 UPSTREAM CG33543 EXON CR45712
2L	4720288	2L_4720288_SNP [dm3] 2L_4720288_SNP [dm6]	A	G	3.051e^-4	0.887	INTRON CG34351
2L	9399561	2L_9399561_SNP [dm3] 2L_9399561_SNP [dm6]	A	G	3.051e^-4	0.887	INTRON Shawl
2R	12370535	2R_12370535_INS [dm3] 2R_16483030_INS [dm6]	A	ATTCGTA	3.107e^-4	0.887	INTERGENIC
3L	11691415	3L_11691415_SNP [dm3] 3L_11698315_SNP [dm6]	C	T	3.107e^-4	0.887	SYNONYMOUS_CODING CG6053	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17902064	2R_17902064_SNP [dm3] 2R_22014559_SNP [dm6]	T	C	3.132e^-4	0.887	INTRON CG34370
3R	9839233	3R_9839233_SNP [dm3] 3R_14013511_SNP [dm6]	A	C	3.144e^-4	0.887	INTRON rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23470074	3R_23470074_SNP [dm3] 3R_27644352_SNP [dm6]	A	G	3.166e^-4	0.887	INTRON tau
2L	9263608	2L_9263608_SNP [dm3] 2L_9263608_SNP [dm6]	C	T	3.220e^-4	0.887	UPSTREAM CR45262 INTRON Ggamma30A	TF binding site mE1_TFBS_inv
2R	7223452	2R_7223452_SNP [dm3] 2R_11335947_SNP [dm6]	T	C	3.242e^-4	0.887	SYNONYMOUS_CODING sha UPSTREAM lambdaTry	TF binding site mE1_TFBS_cad
3L	3080579	3L_3080579_DEL [dm3] 3L_3080579_DEL [dm6]	ACGCGT	A	3.261e^-4	0.887	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	3080587	3L_3080587_SNP [dm3] 3L_3080587_SNP [dm6]	G	T	3.261e^-4	0.887	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	4978723	3L_4978723_SNP [dm3] 3L_4978723_SNP [dm6]	A	C	3.261e^-4	0.887	INTRON Con
3L	2434439	3L_2434439_SNP [dm3] 3L_2434439_SNP [dm6]	T	A	3.288e^-4	0.887	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13255983	2L_13255983_SNP [dm3] 2L_13255983_SNP [dm6]	G	A	3.302e^-4	0.887	SYNONYMOUS_CODING CG31728	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3484522	3L_3484522_SNP [dm3] 3L_3484522_SNP [dm6]	C	A	3.350e^-4	0.887	INTRON CG42324 & 1 other
3R	17812630	3R_17812630_SNP [dm3] 3R_21986908_SNP [dm6]	T	C	3.353e^-4	0.887	INTRON Eip93F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7261792	X_7261792_SNP [dm3] X_7367759_SNP [dm6]	C	A	3.353e^-4	0.887	INTRON CG1677 & 1 other
2L	4794140	2L_4794140_SNP [dm3] 2L_4794140_SNP [dm6]	G	A	3.380e^-4	0.887	UPSTREAM CG3294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8503245	2L_8503245_SNP [dm3] 2L_8503245_SNP [dm6]	C	G	3.385e^-4	0.887	INTRON Dh31
2R	19349919	2R_19349919_SNP [dm3] 2R_23462396_SNP [dm6]	A	G	3.385e^-4	0.887	INTRON CG43795	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22890521	3R_22890521_DEL [dm3] 3R_27064799_DEL [dm6]	AA	C	3.441e^-4	0.887	UPSTREAM Nep5 & 1 other DOWNSTREAM spz INTERGENIC
3R	25321020	3R_25321020_SNP [dm3] 3R_29495298_SNP [dm6]	G	T	3.443e^-4	0.887	INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	19336947	3L_19336947_SNP [dm3] 3L_19343847_SNP [dm6]	T	G	3.456e^-4	0.887	INTRON CG32206
3L	19336948	3L_19336948_SNP [dm3] 3L_19343848_SNP [dm6]	G	T	3.456e^-4	0.887	INTRON CG32206
3R	11424771	3R_11424771_SNP [dm3] 3R_15599049_SNP [dm6]	A	T	3.459e^-4	0.887	INTERGENIC
2L	18222437	2L_18222437_SNP [dm3] 2L_18222437_SNP [dm6]	C	A	3.477e^-4	0.887	INTRON CG42750
3L	1885006	3L_1885006_SNP [dm3] 3L_1885006_SNP [dm6]	G	T	3.499e^-4	0.887	UTR_5_PRIME Aprt UPSTREAM Tmhs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1885017	3L_1885017_SNP [dm3] 3L_1885017_SNP [dm6]	G	T	3.499e^-4	0.887	UTR_5_PRIME Aprt UPSTREAM Tmhs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1885018	3L_1885018_SNP [dm3] 3L_1885018_SNP [dm6]	G	T	3.499e^-4	0.887	UTR_5_PRIME Aprt UPSTREAM Tmhs & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	20623215	3L_20623215_SNP [dm3] 3L_20630115_SNP [dm6]	T	C	3.499e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13123859	2R_13123859_SNP [dm3] 2R_17236354_SNP [dm6]	A	T	3.500e^-4	0.887	INTRON mbl
2R	13130924	2R_13130924_SNP [dm3] 2R_17243419_SNP [dm6]	C	T	3.500e^-4	0.887	INTRON mbl
2R	16499822	2R_16499822_SNP [dm3] 2R_20612317_SNP [dm6]	T	C	3.500e^-4	0.887	INTRON Hil
2R	19301073	2R_19301073_SNP [dm3] 2R_23413550_SNP [dm6]	G	C	3.500e^-4	0.887	NON_SYNONYMOUS_CODING CG9812 INTRON CG9812
3L	3521455	3L_3521455_SNP [dm3] 3L_3521455_SNP [dm6]	G	C	3.500e^-4	0.887	INTRON Eip63E
X	11353044	X_11353044_SNP [dm3] X_11459011_SNP [dm6]	A	G	3.500e^-4	0.887	UTR_3_PRIME HP5 UPSTREAM CG43155
2L	18510150	2L_18510150_SNP [dm3] 2L_18510150_SNP [dm6]	G	A	3.513e^-4	0.887	INTRON CG10178
2L	5467255	2L_5467255_SNP [dm3] 2L_5467255_SNP [dm6]	A	T	3.519e^-4	0.887	UTR_3_PRIME mid DOWNSTREAM mid
3R	921448	3R_921448_SNP [dm3] 3R_5095726_SNP [dm6]	A	G	3.560e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	721205	3L_721205_SNP [dm3] 3L_721205_SNP [dm6]	C	T	3.610e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	721259	3L_721259_SNP [dm3] 3L_721259_SNP [dm6]	A	T	3.610e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	721262	3L_721262_SNP [dm3] 3L_721262_SNP [dm6]	G	A	3.610e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	721272	3L_721272_SNP [dm3] 3L_721272_SNP [dm6]	T	A	3.610e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11971422	2R_11971422_SNP [dm3] 2R_16083917_SNP [dm6]	A	G	3.653e^-4	0.887	INTRON Dg	TF binding site mE1_TFBS_cad
3L	7989374	3L_7989374_INS [dm3] 3L_7996274_INS [dm6]	T	TTTTTTG	3.653e^-4	0.887	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad
3L	7989376	3L_7989376_DEL [dm3] 3L_7996276_DEL [dm6]	TA	T	3.653e^-4	0.887	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad
2R	17566969	2R_17566969_SNP [dm3] 2R_21679464_SNP [dm6]	C	G	3.653e^-4	0.887	NON_SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9724718	3L_9724718_SNP [dm3] 3L_9731618_SNP [dm6]	C	G	3.674e^-4	0.887	SYNONYMOUS_CODING CG6749 DOWNSTREAM ATPsyn-b	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14230121	2R_14230121_SNP [dm3] 2R_18342616_SNP [dm6]	C	G	3.683e^-4	0.887	INTRON sbb
2L	1291190	2L_1291190_SNP [dm3] 2L_1291190_SNP [dm6]	C	T	3.742e^-4	0.887	INTRON robo3
2L	12982336	2L_12982336_SNP [dm3] 2L_12982336_SNP [dm6]	A	T	3.742e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18122285	2L_18122285_SNP [dm3] 2L_18122285_SNP [dm6]	C	T	3.742e^-4	0.887	UPSTREAM CG5758 INTRON CG5758
2L	2002903	2L_2002903_SNP [dm3] 2L_2002903_SNP [dm6]	A	G	3.742e^-4	0.887	SYNONYMOUS_CODING CG33543 INTRON CR43464
2L	2006450	2L_2006450_SNP [dm3] 2L_2006450_SNP [dm6]	T	A	3.742e^-4	0.887	UPSTREAM CR45712 & 1 other DOWNSTREAM CG15353 INTERGENIC
2L	2006464	2L_2006464_SNP [dm3] 2L_2006464_SNP [dm6]	A	C	3.742e^-4	0.887	UPSTREAM CR45712 & 1 other DOWNSTREAM CG15353 INTERGENIC
2L	2006469	2L_2006469_SNP [dm3] 2L_2006469_SNP [dm6]	A	C	3.742e^-4	0.887	UPSTREAM CR45712 & 1 other DOWNSTREAM CG15353 INTERGENIC
2L	2006483	2L_2006483_SNP [dm3] 2L_2006483_SNP [dm6]	T	G	3.742e^-4	0.887	UPSTREAM CR45712 & 1 other DOWNSTREAM CG15353 INTERGENIC
2L	3135078	2L_3135078_SNP [dm3] 2L_3135078_SNP [dm6]	T	A	3.742e^-4	0.887	INTRON toc
2L	3355028	2L_3355028_SNP [dm3] 2L_3355028_SNP [dm6]	A	G	3.742e^-4	0.887	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3355037	2L_3355037_SNP [dm3] 2L_3355037_SNP [dm6]	C	T	3.742e^-4	0.887	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3355073	2L_3355073_SNP [dm3] 2L_3355073_SNP [dm6]	G	T	3.742e^-4	0.887	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3530293	2L_3530293_SNP [dm3] 2L_3530293_SNP [dm6]	T	A	3.742e^-4	0.887	UTR_5_PRIME Spindly UPSTREAM Che-13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3531246	2L_3531246_SNP [dm3] 2L_3531246_SNP [dm6]	C	A	3.742e^-4	0.887	SPLICE_SITE_REGION Che-13 UPSTREAM Spindly INTRON Che-13
2L	4726316	2L_4726316_INS [dm3] 2L_4726316_INS [dm6]	G	GG	3.742e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4726332	2L_4726332_SNP [dm3] 2L_4726332_SNP [dm6]	A	T	3.742e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4726375	2L_4726375_SNP [dm3] 2L_4726375_SNP [dm6]	A	C	3.742e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	4726416	2L_4726416_SNP [dm3] 2L_4726416_SNP [dm6]	G	T	3.742e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	4726434	2L_4726434_DEL [dm3] 2L_4726434_DEL [dm6]	TTATGTTTGA	G	3.742e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	4726463	2L_4726463_SNP [dm3] 2L_4726463_SNP [dm6]	G	T	3.742e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	4726630	2L_4726630_DEL [dm3] 2L_4726630_DEL [dm6]	TGGCACTC	A	3.742e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	4726640	2L_4726640_DEL [dm3] 2L_4726640_DEL [dm6]	TGGACC	T	3.742e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	5383703	2L_5383703_SNP [dm3] 2L_5383703_SNP [dm6]	T	C	3.742e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9260607	2L_9260607_SNP [dm3] 2L_9260607_SNP [dm6]	T	C	3.742e^-4	0.887	INTRON Ggamma30A
2L	9383761	2L_9383761_SNP [dm3] 2L_9383761_SNP [dm6]	G	C	3.742e^-4	0.887	INTRON Shawl
2L	770261	2L_770261_SNP [dm3] 2L_770261_SNP [dm6]	C	T	3.749e^-4	0.887	INTERGENIC
X	20258601	X_20258601_SNP [dm3] X_20387574_SNP [dm6]	G	C	3.755e^-4	0.887	INTERGENIC
2L	770067	2L_770067_INS [dm3] 2L_770067_INS [dm6]	T	TTACTAT	3.776e^-4	0.887	INTERGENIC
2L	770213	2L_770213_SNP [dm3] 2L_770213_SNP [dm6]	A	G	3.776e^-4	0.887	INTERGENIC
2L	770255	2L_770255_SNP [dm3] 2L_770255_SNP [dm6]	T	C	3.776e^-4	0.887	INTERGENIC
2L	770287	2L_770287_SNP [dm3] 2L_770287_SNP [dm6]	G	A	3.776e^-4	0.887	INTERGENIC
3R	23129030	3R_23129030_SNP [dm3] 3R_27303308_SNP [dm6]	A	T	3.783e^-4	0.887	SYNONYMOUS_CODING CG3339
3R	9695040	3R_9695040_SNP [dm3] 3R_13869318_SNP [dm6]	A	T	3.783e^-4	0.887	INTRON E5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7235973	3R_7235973_SNP [dm3] 3R_11410251_SNP [dm6]	A	G	3.784e^-4	0.887	SYNONYMOUS_CODING Irbp UPSTREAM snoRNA:Irbp-a & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	13248746	2L_13248746_SNP [dm3] 2L_13248746_SNP [dm6]	T	C	3.815e^-4	0.887	INTRON CG16820
3L	3138788	3L_3138788_SNP [dm3] 3L_3138788_SNP [dm6]	C	G	3.822e^-4	0.887	INTRON CG11537
3L	3422210	3L_3422210_SNP [dm3] 3L_3422210_SNP [dm6]	T	C	3.822e^-4	0.887	INTRON sty
3L	3422241	3L_3422241_SNP [dm3] 3L_3422241_SNP [dm6]	C	T	3.822e^-4	0.887	INTRON sty
3L	7997878	3L_7997878_INS [dm3] 3L_8004778_INS [dm6]	C	CC	3.822e^-4	0.887	INTRON nmo
3L	8582649	3L_8582649_SNP [dm3] 3L_8589549_SNP [dm6]	C	T	3.822e^-4	0.887	UPSTREAM CG43078 INTRON CG43078
3L	8582875	3L_8582875_SNP [dm3] 3L_8589775_SNP [dm6]	G	T	3.822e^-4	0.887	UPSTREAM CG43078 INTRON CG43078
3L	8582963	3L_8582963_SNP [dm3] 3L_8589863_SNP [dm6]	T	C	3.822e^-4	0.887	UPSTREAM CG43078 INTRON CG43078
3L	8583017	3L_8583017_SNP [dm3] 3L_8589917_SNP [dm6]	G	A	3.822e^-4	0.887	UPSTREAM CG43078 INTRON CG43078
X	15019244	X_15019244_SNP [dm3] X_15125211_SNP [dm6]	T	C	3.822e^-4	0.887	UPSTREAM drd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17549670	X_17549670_SNP [dm3] X_17655637_SNP [dm6]	A	T	3.822e^-4	0.887	INTRON IntS2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7526499	2R_7526499_SNP [dm3] 2R_11638994_SNP [dm6]	C	T	3.823e^-4	0.887	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12474519	2R_12474519_SNP [dm3] 2R_16587014_SNP [dm6]	T	A	3.841e^-4	0.887	DOWNSTREAM CG8311 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	3019746	3R_3019746_SNP [dm3] 3R_7194024_SNP [dm6]	G	A	3.892e^-4	0.887	INTRON lap
X	12295860	X_12295860_SNP [dm3] X_12401827_SNP [dm6]	G	C	3.915e^-4	0.887	INTERGENIC
X	19724655	X_19724655_SNP [dm3] X_19830622_SNP [dm6]	C	A	3.915e^-4	0.887	UTR_3_PRIME pico DOWNSTREAM pico
3L	16190193	3L_16190193_SNP [dm3] 3L_16197093_SNP [dm6]	T	A	3.931e^-4	0.887	UPSTREAM CG33687 EXON CR45437
2L	9517584	2L_9517584_SNP [dm3] 2L_9517584_SNP [dm6]	T	C	3.952e^-4	0.887	SYNONYMOUS_CODING CG33298
2R	17318589	2R_17318589_SNP [dm3] 2R_21431084_SNP [dm6]	T	C	4.025e^-4	0.887	INTRON Sdc
3L	14432583	3L_14432583_SNP [dm3] 3L_14439483_SNP [dm6]	A	T	4.032e^-4	0.887	INTRON bbg
3L	14432737	3L_14432737_SNP [dm3] 3L_14439637_SNP [dm6]	T	C	4.032e^-4	0.887	INTRON bbg
2L	1520013	2L_1520013_SNP [dm3] 2L_1520013_SNP [dm6]	C	T	4.063e^-4	0.887	UPSTREAM Or22a DOWNSTREAM CG44072 INTERGENIC
2L	1520459	2L_1520459_SNP [dm3] 2L_1520459_SNP [dm6]	T	A	4.063e^-4	0.887	UPSTREAM Or22a & 1 other INTERGENIC
2L	1520473	2L_1520473_SNP [dm3] 2L_1520473_SNP [dm6]	A	G	4.063e^-4	0.887	UPSTREAM Or22a & 1 other INTERGENIC
2R	8300688	2R_8300688_SNP [dm3] 2R_12413183_SNP [dm6]	A	T	4.069e^-4	0.887	UPSTREAM Cpr49Ah INTERGENIC
X	8542256	X_8542256_SNP [dm3] X_8648223_SNP [dm6]	T	C	4.080e^-4	0.887	INTRON oc	silencer mE1_HDAC_PRE
X	2923071	X_2923071_DEL [dm3] X_3029038_DEL [dm6]	TT	T	4.103e^-4	0.887	INTRON kirre
2R	19674926	2R_19674926_SNP [dm3] 2R_23787403_SNP [dm6]	G	A	4.128e^-4	0.887	INTRON CG9850
3L	7512907	3L_7512907_SNP [dm3] 3L_7519807_SNP [dm6]	G	A	4.128e^-4	0.887	SYNONYMOUS_CODING ltl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9724186	3L_9724186_SNP [dm3] 3L_9731086_SNP [dm6]	A	C	4.128e^-4	0.887	SYNONYMOUS_CODING ATPsyn-b DOWNSTREAM CG6749	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9726266	3L_9726266_SNP [dm3] 3L_9733166_SNP [dm6]	C	T	4.128e^-4	0.887	SYNONYMOUS_CODING CG6749 DOWNSTREAM mir-4986 & 1 other
3L	4976908	3L_4976908_SNP [dm3] 3L_4976908_SNP [dm6]	G	C	4.150e^-4	0.887	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	21184268	3R_21184268_SNP [dm3] 3R_25358546_SNP [dm6]	T	A	4.170e^-4	0.887	INTRON Fur1 & 1 other
3L	10841019	3L_10841019_SNP [dm3] 3L_10847919_SNP [dm6]	T	A	4.177e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6644230	3L_6644230_SNP [dm3] 3L_6651130_SNP [dm6]	G	C	4.195e^-4	0.887	INTERGENIC
2L	4757956	2L_4757956_DEL [dm3] 2L_4757956_DEL [dm6]	AC	A	4.198e^-4	0.887	INTRON CG15630
X	12513579	X_12513579_INS [dm3] X_12619546_INS [dm6]	A	AAATTTAACCTAT...	4.222e^-4	0.887	INTRON CG11085
X	12513583	X_12513583_SNP [dm3] X_12619550_SNP [dm6]	G	T	4.222e^-4	0.887	INTRON CG11085
X	12513590	X_12513590_MNP [dm3] X_12619557_MNP [dm6]	GCC	TTT	4.222e^-4	0.887	INTRON CG11085
X	12513594	X_12513594_SNP [dm3] X_12619561_SNP [dm6]	A	T	4.222e^-4	0.887	INTRON CG11085
2R	5233267	2R_5233267_SNP [dm3] 2R_9345762_SNP [dm6]	G	A	4.224e^-4	0.887	NON_SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
3L	10963441	3L_10963441_SNP [dm3] 3L_10970341_SNP [dm6]	C	A	4.224e^-4	0.887	INTERGENIC
3L	2835654	3L_2835654_SNP [dm3] 3L_2835654_SNP [dm6]	T	A	4.251e^-4	0.887	INTRON CG43444
3L	7150939	3L_7150939_SNP [dm3] 3L_7157839_SNP [dm6]	G	T	4.274e^-4	0.887	UPSTREAM corn & 1 other INTERGENIC
X	9491280	X_9491280_SNP [dm3] X_9597247_SNP [dm6]	A	T	4.274e^-4	0.887	INTERGENIC
2L	18214843	2L_18214843_SNP [dm3] 2L_18214843_SNP [dm6]	T	G	4.311e^-4	0.887	INTRON CG42750
2L	4071108	2L_4071108_SNP [dm3] 2L_4071108_SNP [dm6]	G	A	4.314e^-4	0.887	INTRON ed
3L	2431992	3L_2431992_SNP [dm3] 3L_2431992_SNP [dm6]	G	A	4.332e^-4	0.887	INTRON CG45186
3L	2619676	3L_2619676_SNP [dm3] 3L_2619676_SNP [dm6]	C	T	4.332e^-4	0.887	INTRON Pxn
3L	3453265	3L_3453265_SNP [dm3] 3L_3453265_SNP [dm6]	G	T	4.332e^-4	0.887	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24719302	3R_24719302_SNP [dm3] 3R_28893580_SNP [dm6]	A	T	4.339e^-4	0.887	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo
3R	9388985	3R_9388985_SNP [dm3] 3R_13563263_SNP [dm6]	T	A	4.339e^-4	0.887	INTERGENIC
2L	2196711	2L_2196711_SNP [dm3] 2L_2196711_SNP [dm6]	A	G	4.360e^-4	0.887	INTRON CG34172	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	4726587	2L_4726587_SNP [dm3] 2L_4726587_SNP [dm6]	C	G	4.360e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	10322860	2L_10322860_SNP [dm3] 2L_10322860_SNP [dm6]	A	G	4.364e^-4	0.887	UPSTREAM CG4995 INTRON CG5381 & 1 other
3R	21231638	3R_21231638_SNP [dm3] 3R_25405916_SNP [dm6]	A	C	4.385e^-4	0.887	INTRON Fur1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20824635	3L_20824635_SNP [dm3] 3L_20831535_SNP [dm6]	A	C	4.392e^-4	0.887	INTRON Pka-R1
2L	9245576	2L_9245576_SNP [dm3] 2L_9245576_SNP [dm6]	G	T	4.431e^-4	0.887	SYNONYMOUS_CODING tai
2L	9245842	2L_9245842_SNP [dm3] 2L_9245842_SNP [dm6]	G	T	4.431e^-4	0.887	UTR_3_PRIME tai
2R	9446051	2R_9446051_DEL [dm3] 2R_13558546_DEL [dm6]	TT	T	4.461e^-4	0.887	UTR_5_PRIME CG13334 UPSTREAM snoRNA:Psi28S-1153 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1129068	3L_1129068_DEL [dm3] 3L_1129068_DEL [dm6]	AG	A	4.461e^-4	0.887	INTERGENIC	regulatory region REDfly_CRMs
3L	12064477	3L_12064477_SNP [dm3] 3L_12071377_SNP [dm6]	G	A	4.461e^-4	0.887	INTRON Sema-5c	TF binding site mE1_TFBS_chinmo
3L	12064480	3L_12064480_SNP [dm3] 3L_12071380_SNP [dm6]	T	C	4.461e^-4	0.887	INTRON Sema-5c	TF binding site mE1_TFBS_chinmo
3L	12064481	3L_12064481_SNP [dm3] 3L_12071381_SNP [dm6]	T	A	4.461e^-4	0.887	INTRON Sema-5c	TF binding site mE1_TFBS_chinmo
3L	12064483	3L_12064483_SNP [dm3] 3L_12071383_SNP [dm6]	A	G	4.461e^-4	0.887	INTRON Sema-5c	TF binding site mE1_TFBS_chinmo
3L	18577702	3L_18577702_SNP [dm3] 3L_18584602_SNP [dm6]	G	A	4.461e^-4	0.887	DOWNSTREAM CR45435 INTERGENIC
3L	18577704	3L_18577704_SNP [dm3] 3L_18584604_SNP [dm6]	C	G	4.461e^-4	0.887	DOWNSTREAM CR45435 INTERGENIC
3L	18577747	3L_18577747_SNP [dm3] 3L_18584647_SNP [dm6]	G	T	4.461e^-4	0.887	DOWNSTREAM CR45435 INTERGENIC
3L	2835495	3L_2835495_SNP [dm3] 3L_2835495_SNP [dm6]	C	T	4.461e^-4	0.887	INTRON CG43444
3L	2835549	3L_2835549_SNP [dm3] 3L_2835549_SNP [dm6]	T	G	4.461e^-4	0.887	INTRON CG43444
3L	2835565	3L_2835565_DEL [dm3] 3L_2835565_DEL [dm6]	TCGAATCTTT	T	4.461e^-4	0.887	INTRON CG43444
3L	3782135	3L_3782135_SNP [dm3] 3L_3782135_SNP [dm6]	G	A	4.461e^-4	0.887	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	6293209	2L_6293209_SNP [dm3] 2L_6293209_SNP [dm6]	A	G	4.482e^-4	0.887	INTRON Ddr
3L	9868567	3L_9868567_SNP [dm3] 3L_9875467_SNP [dm6]	G	A	4.515e^-4	0.887	UPSTREAM CR45406 INTERGENIC
3L	12079010	3L_12079010_SNP [dm3] 3L_12085910_SNP [dm6]	T	C	4.562e^-4	0.887	INTERGENIC
X	2365838	X_2365838_SNP [dm3] X_2471805_SNP [dm6]	G	T	4.588e^-4	0.887	INTRON trol
2L	8792858	2L_8792858_SNP [dm3] 2L_8792858_SNP [dm6]	C	T	4.590e^-4	0.887	INTERGENIC
3R	22727094	3R_22727094_SNP [dm3] 3R_26901372_SNP [dm6]	G	C	4.604e^-4	0.887	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	17011303	2R_17011303_DEL [dm3] 2R_21123798_DEL [dm6]	CGTCAGGCC	C	4.617e^-4	0.887	UTR_3_PRIME CG4050 DOWNSTREAM ktub
2L	7168682	2L_7168682_SNP [dm3] 2L_7168682_SNP [dm6]	A	C	4.629e^-4	0.887	INTERGENIC
3L	5369240	3L_5369240_SNP [dm3] 3L_5376140_SNP [dm6]	G	T	4.636e^-4	0.887	INTERGENIC
3L	17818277	3L_17818277_SNP [dm3] 3L_17825177_SNP [dm6]	T	C	4.658e^-4	0.887	INTRON Grd
3L	4978279	3L_4978279_SNP [dm3] 3L_4978279_SNP [dm6]	C	T	4.664e^-4	0.887	INTRON Con
3L	16684124	3L_16684124_SNP [dm3] 3L_16691024_SNP [dm6]	A	T	4.680e^-4	0.887	INTRON Lasp & 2 others
3R	7244508	3R_7244508_SNP [dm3] 3R_11418786_SNP [dm6]	G	A	4.680e^-4	0.887	UPSTREAM CG45676 & 1 other DOWNSTREAM ninaG INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14304576	2L_14304576_SNP [dm3] 2L_14304576_SNP [dm6]	G	A	4.692e^-4	0.887	INTRON wb	TF binding site mE1_TFBS_inv
3L	16257488	3L_16257488_SNP [dm3] 3L_16264388_SNP [dm6]	C	T	4.700e^-4	0.887	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2L	6566668	2L_6566668_SNP [dm3] 2L_6566668_SNP [dm6]	T	C	4.729e^-4	0.887	UPSTREAM CG13766 INTERGENIC
3L	1119472	3L_1119472_SNP [dm3] 3L_1119472_SNP [dm6]	G	A	4.739e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17612133	2R_17612133_SNP [dm3] 2R_21724628_SNP [dm6]	A	T	4.791e^-4	0.887	DOWNSTREAM LBR INTERGENIC
3R	26363769	3R_26363769_SNP [dm3] 3R_30538047_SNP [dm6]	C	A	4.806e^-4	0.887	UPSTREAM tmod INTRON tmod
3R	9822886	3R_9822886_SNP [dm3] 3R_13997164_SNP [dm6]	C	A	4.844e^-4	0.887	INTRON rdx
3R	9822887	3R_9822887_SNP [dm3] 3R_13997165_SNP [dm6]	T	C	4.844e^-4	0.887	INTRON rdx
X	14254676	X_14254676_SNP [dm3] X_14360643_SNP [dm6]	G	A	4.854e^-4	0.887	INTRON dpr8
2L	18185010	2L_18185010_SNP [dm3] 2L_18185010_SNP [dm6]	T	A	4.864e^-4	0.887	UPSTREAM CG7180 DOWNSTREAM CR44900 INTRON CG42750	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14435275	3L_14435275_SNP [dm3] 3L_14442175_SNP [dm6]	C	T	4.864e^-4	0.887	INTRON bbg
3L	14435448	3L_14435448_SNP [dm3] 3L_14442348_SNP [dm6]	A	C	4.864e^-4	0.887	INTRON bbg
2L	3750983	2L_3750983_SNP [dm3] 2L_3750983_SNP [dm6]	C	G	4.868e^-4	0.887	INTRON CG10019
2R	10705507	2R_10705507_SNP [dm3] 2R_14818002_SNP [dm6]	A	T	4.939e^-4	0.887	SYNONYMOUS_CODING CG10202	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17163071	X_17163071_SNP [dm3] X_17269038_SNP [dm6]	T	A	4.950e^-4	0.887	INTRON f
3L	18568516	3L_18568516_SNP [dm3] 3L_18575416_SNP [dm6]	G	T	4.968e^-4	0.887	UTR_3_PRIME AstC-R1	TF binding site mE1_TFBS_inv
3R	19541272	3R_19541272_SNP [dm3] 3R_23715550_SNP [dm6]	C	T	4.968e^-4	0.887	INTRON nau	regulatory region REDfly_CRMs
2L	3007061	2L_3007061_SNP [dm3] 2L_3007061_SNP [dm6]	A	G	4.992e^-4	0.887	INTRON CG17265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	3427607	2L_3427607_SNP [dm3] 2L_3427607_SNP [dm6]	T	C	4.992e^-4	0.887	UPSTREAM pgant2 INTERGENIC
2L	9680121	2L_9680121_SNP [dm3] 2L_9680121_SNP [dm6]	T	A	4.998e^-4	0.887	INTERGENIC
2L	11497363	2L_11497363_SNP [dm3] 2L_11497363_SNP [dm6]	T	A	5.001e^-4	0.887	SYNONYMOUS_CODING CG6488	TF binding site mE1_TFBS_cad
2R	11442692	2R_11442692_SNP [dm3] 2R_15555187_SNP [dm6]	C	A	5.027e^-4	0.887	UPSTREAM CG12963 INTERGENIC
2R	11442699	2R_11442699_DEL [dm3] 2R_15555194_DEL [dm6]	AAAGGACTTATGTATATTTT...	A	5.027e^-4	0.887	UPSTREAM CG12963 INTERGENIC
2R	11442755	2R_11442755_SNP [dm3] 2R_15555250_SNP [dm6]	G	A	5.027e^-4	0.887	UPSTREAM CG12963 INTERGENIC
2R	11442772	2R_11442772_SNP [dm3] 2R_15555267_SNP [dm6]	T	A	5.027e^-4	0.887	UPSTREAM CG12963 INTERGENIC
2R	12505895	2R_12505895_SNP [dm3] 2R_16618390_SNP [dm6]	A	G	5.027e^-4	0.887	INTRON CG5065
2R	12505974	2R_12505974_SNP [dm3] 2R_16618469_SNP [dm6]	G	A	5.027e^-4	0.887	INTRON CG5065
2R	12506064	2R_12506064_SNP [dm3] 2R_16618559_SNP [dm6]	G	A	5.027e^-4	0.887	INTRON CG5065
2R	12506092	2R_12506092_INS [dm3] 2R_16618587_INS [dm6]	A	ACATGCTAC	5.027e^-4	0.887	INTRON CG5065
2R	12506162	2R_12506162_SNP [dm3] 2R_16618657_SNP [dm6]	A	T	5.027e^-4	0.887	INTRON CG5065
2R	12506164	2R_12506164_SNP [dm3] 2R_16618659_SNP [dm6]	G	T	5.027e^-4	0.887	INTRON CG5065
2R	12506165	2R_12506165_SNP [dm3] 2R_16618660_SNP [dm6]	A	G	5.027e^-4	0.887	INTRON CG5065
2R	12506168	2R_12506168_SNP [dm3] 2R_16618663_SNP [dm6]	G	C	5.027e^-4	0.887	INTRON CG5065
2R	12506173	2R_12506173_SNP [dm3] 2R_16618668_SNP [dm6]	A	T	5.027e^-4	0.887	INTRON CG5065
2R	12506176	2R_12506176_INS [dm3] 2R_16618671_INS [dm6]	T	TTTGTATGCGGCTCTAGA...	5.027e^-4	0.887	INTRON CG5065
2R	12506196	2R_12506196_DEL [dm3] 2R_16618691_DEL [dm6]	TT	T	5.027e^-4	0.887	INTRON CG5065
2R	12506216	2R_12506216_SNP [dm3] 2R_16618711_SNP [dm6]	A	T	5.027e^-4	0.887	INTRON CG5065
3L	11662128	3L_11662128_SNP [dm3] 3L_11669028_SNP [dm6]	G	C	5.027e^-4	0.887	INTRON CG32085
X	632683	X_632683_SNP [dm3] X_738650_SNP [dm6]	G	T	5.052e^-4	0.887	INTRON sdk
3L	20601499	3L_20601499_SNP [dm3] 3L_20608399_SNP [dm6]	G	C	5.076e^-4	0.887	INTRON knrl
2L	769842	2L_769842_SNP [dm3] 2L_769842_SNP [dm6]	T	C	5.096e^-4	0.887	INTERGENIC
2L	769871	2L_769871_SNP [dm3] 2L_769871_SNP [dm6]	T	G	5.096e^-4	0.887	INTERGENIC
2L	769872	2L_769872_SNP [dm3] 2L_769872_SNP [dm6]	T	A	5.096e^-4	0.887	INTERGENIC
2L	769876	2L_769876_SNP [dm3] 2L_769876_SNP [dm6]	T	C	5.096e^-4	0.887	INTERGENIC
2L	4794191	2L_4794191_SNP [dm3] 2L_4794191_SNP [dm6]	A	T	5.099e^-4	0.887	UPSTREAM CG3294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18183080	2L_18183080_SNP [dm3] 2L_18183080_SNP [dm6]	C	T	5.105e^-4	0.887	SYNONYMOUS_CODING CG7180 INTRON CG42750
3L	16740346	3L_16740346_SNP [dm3] 3L_16747246_SNP [dm6]	T	C	5.116e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	18234409	2L_18234409_SNP [dm3] 2L_18234409_SNP [dm6]	C	A	5.125e^-4	0.887	INTRON CG42750
2R	16073674	2R_16073674_SNP [dm3] 2R_20186169_SNP [dm6]	A	C	5.137e^-4	0.887	INTERGENIC
3L	10926174	3L_10926174_SNP [dm3] 3L_10933074_SNP [dm6]	A	C	5.137e^-4	0.887	INTERGENIC
3R	11691206	3R_11691206_SNP [dm3] 3R_15865484_SNP [dm6]	A	G	5.137e^-4	0.887	INTRON CG31183
3R	16870569	3R_16870569_DEL [dm3] 3R_21044847_DEL [dm6]	AA	A	5.137e^-4	0.887	UTR_3_PRIME CG12278 DOWNSTREAM CG31189
3R	16870576	3R_16870576_SNP [dm3] 3R_21044854_SNP [dm6]	C	G	5.137e^-4	0.887	UTR_3_PRIME CG12278 DOWNSTREAM CG31189
3R	20505044	3R_20505044_SNP [dm3] 3R_24679322_SNP [dm6]	C	A	5.137e^-4	0.887	INTRON slo	TF binding site BDTNP1_TFBS_z
3R	25427028	3R_25427028_SNP [dm3] 3R_29601306_SNP [dm6]	T	C	5.137e^-4	0.887	UPSTREAM CG7568 INTRON alph
3R	3546425	3R_3546425_SNP [dm3] 3R_7720703_SNP [dm6]	A	G	5.137e^-4	0.887	INTRON CR44260
X	20323274	X_20323274_SNP [dm3] X_20452247_SNP [dm6]	C	T	5.137e^-4	0.887	INTRON CG32506	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17843902	3R_17843902_SNP [dm3] 3R_22018180_SNP [dm6]	C	A	5.142e^-4	0.887	INTRON CG6439
3R	17843926	3R_17843926_SNP [dm3] 3R_22018204_SNP [dm6]	T	A	5.142e^-4	0.887	INTRON CG6439
3R	20682396	3R_20682396_SNP [dm3] 3R_24856674_SNP [dm6]	A	G	5.142e^-4	0.887	SYNONYMOUS_CODING CG10899 UPSTREAM HdacX DOWNSTREAM ppk22
3R	3136913	3R_3136913_SNP [dm3] 3R_7311191_SNP [dm6]	G	T	5.142e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	15345796	2L_15345796_SNP [dm3] 2L_15345796_SNP [dm6]	T	C	5.190e^-4	0.887	INTERGENIC
3R	24872160	3R_24872160_SNP [dm3] 3R_29046438_SNP [dm6]	A	C	5.206e^-4	0.887	UTR_3_PRIME Pkc98E
3L	6812395	3L_6812395_SNP [dm3] 3L_6819295_SNP [dm6]	C	T	5.217e^-4	0.887	INTERGENIC
2R	9438780	2R_9438780_SNP [dm3] 2R_13551275_SNP [dm6]	G	A	5.258e^-4	0.887	UTR_5_PRIME CG33156 INTRON CG33156
3L	16326392	3L_16326392_SNP [dm3] 3L_16333292_SNP [dm6]	G	A	5.282e^-4	0.887	UPSTREAM CG13056 DOWNSTREAM retinin INTERGENIC
3L	16326456	3L_16326456_SNP [dm3] 3L_16333356_SNP [dm6]	A	G	5.282e^-4	0.887	DOWNSTREAM retinin INTRON CG13056
3L	16326484	3L_16326484_DEL [dm3] 3L_16333384_DEL [dm6]	TTT	T	5.282e^-4	0.887	DOWNSTREAM retinin INTRON CG13056
3L	16326514	3L_16326514_INS [dm3] 3L_16333414_INS [dm6]	T	TA	5.282e^-4	0.887	DOWNSTREAM retinin INTRON CG13056
3L	16326518	3L_16326518_SNP [dm3] 3L_16333418_SNP [dm6]	T	A	5.282e^-4	0.887	NON_SYNONYMOUS_CODING CG13056 SPLICE_SITE_REGION CG13056 DOWNSTREAM retinin
3R	13523916	3R_13523916_SNP [dm3] 3R_17698194_SNP [dm6]	A	G	5.287e^-4	0.887	INTRON osa	TF binding site mE1_TFBS_chinmo
3R	14187168	3R_14187168_SNP [dm3] 3R_18361446_SNP [dm6]	T	A	5.287e^-4	0.887	UPSTREAM CG15803 & 1 other DOWNSTREAM CR45634 INTERGENIC
2L	18122208	2L_18122208_SNP [dm3] 2L_18122208_SNP [dm6]	A	G	5.292e^-4	0.887	UPSTREAM CG5758 INTRON CG5758
2L	18222855	2L_18222855_SNP [dm3] 2L_18222855_SNP [dm6]	G	C	5.292e^-4	0.887	INTRON CG42750
2L	18240291	2L_18240291_SNP [dm3] 2L_18240291_SNP [dm6]	C	A	5.292e^-4	0.887	INTRON CG42750
2L	20866973	2L_20866973_SNP [dm3] 2L_20866973_SNP [dm6]	T	C	5.292e^-4	0.887	SYNONYMOUS_CODING CG9338 UPSTREAM CG31675
2L	2850709	2L_2850709_SNP [dm3] 2L_2850709_SNP [dm6]	G	A	5.292e^-4	0.887	INTRON CG3104
2L	6113188	2L_6113188_SNP [dm3] 2L_6113188_SNP [dm6]	A	C	5.292e^-4	0.887	INTRON stai
2L	7213434	2L_7213434_SNP [dm3] 2L_7213434_SNP [dm6]	T	A	5.292e^-4	0.887	INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7465384	2L_7465384_SNP [dm3] 2L_7465384_SNP [dm6]	G	T	5.292e^-4	0.887	INTERGENIC
2L	8474237	2L_8474237_INS [dm3] 2L_8474237_INS [dm6]	T	TACAG	5.292e^-4	0.887	INTRON d
2R	1230515	2R_1230515_SNP [dm3] 2R_5343010_SNP [dm6]	A	G	5.292e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	1380394	2R_1380394_SNP [dm3] 2R_5492889_SNP [dm6]	T	C	5.292e^-4	0.887	INTRON CG30440
2L	19385039	2L_19385039_SNP [dm3] 2L_19385039_SNP [dm6]	A	G	5.303e^-4	0.887	SYNONYMOUS_CODING fon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13527082	X_13527082_SNP [dm3] X_13633049_SNP [dm6]	A	G	5.307e^-4	0.887	INTRON NFAT	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	6926309	3L_6926309_SNP [dm3] 3L_6933209_SNP [dm6]	C	T	5.308e^-4	0.887	SYNONYMOUS_CODING CG14820
2L	18230382	2L_18230382_SNP [dm3] 2L_18230382_SNP [dm6]	A	G	5.360e^-4	0.887	INTRON CG42750	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26387986	3R_26387986_SNP [dm3] 3R_30562264_SNP [dm6]	A	T	5.409e^-4	0.887	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	26393741	3R_26393741_SNP [dm3] 3R_30568019_SNP [dm6]	G	A	5.409e^-4	0.887	INTRON tmod	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26394629	3R_26394629_SNP [dm3] 3R_30568907_SNP [dm6]	G	A	5.409e^-4	0.887	INTRON tmod	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26394712	3R_26394712_SNP [dm3] 3R_30568990_SNP [dm6]	T	A	5.409e^-4	0.887	INTRON tmod	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5125022	2R_5125022_SNP [dm3] 2R_9237517_SNP [dm6]	G	T	5.415e^-4	0.887	UTR_5_PRIME Cyp4p2 INTRON hig
3R	19511853	3R_19511853_SNP [dm3] 3R_23686131_SNP [dm6]	C	T	5.420e^-4	0.887	UTR_3_PRIME CG18754 UPSTREAM SPE DOWNSTREAM CG18754
3L	19339440	3L_19339440_SNP [dm3] 3L_19346340_SNP [dm6]	C	A	5.505e^-4	0.887	INTRON CG32206
2L	9383831	2L_9383831_DEL [dm3] 2L_9383831_DEL [dm6]	CC	C	5.542e^-4	0.887	INTRON Shawl
X	2703387	X_2703387_SNP [dm3] X_2809354_SNP [dm6]	C	A	5.547e^-4	0.887	UPSTREAM CG12498 INTRON kirre
3R	3625791	3R_3625791_SNP [dm3] 3R_7800069_SNP [dm6]	A	G	5.553e^-4	0.887	INTRON CG3014
3L	12212298	3L_12212298_SNP [dm3] 3L_12219198_SNP [dm6]	G	A	5.588e^-4	0.887	INTRON app
2R	1837087	2R_1837087_SNP [dm3] 2R_5949582_SNP [dm6]	C	G	5.600e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	20280114	3L_20280114_SNP [dm3] 3L_20287014_SNP [dm6]	A	G	5.605e^-4	0.887	INTRON gogo
3R	17813282	3R_17813282_SNP [dm3] 3R_21987560_SNP [dm6]	A	C	5.605e^-4	0.887	INTRON Eip93F
2L	9229144	2L_9229144_SNP [dm3] 2L_9229144_SNP [dm6]	C	A	5.606e^-4	0.887	INTRON tai
2L	9229152	2L_9229152_SNP [dm3] 2L_9229152_SNP [dm6]	T	C	5.606e^-4	0.887	INTRON tai
2L	9229157	2L_9229157_SNP [dm3] 2L_9229157_SNP [dm6]	A	G	5.606e^-4	0.887	INTRON tai
2L	9229158	2L_9229158_SNP [dm3] 2L_9229158_SNP [dm6]	A	T	5.606e^-4	0.887	INTRON tai
2L	9229160	2L_9229160_SNP [dm3] 2L_9229160_SNP [dm6]	A	T	5.606e^-4	0.887	INTRON tai
2L	9229164	2L_9229164_SNP [dm3] 2L_9229164_SNP [dm6]	A	C	5.606e^-4	0.887	INTRON tai
2L	12285769	2L_12285769_SNP [dm3] 2L_12285769_SNP [dm6]	G	A	5.606e^-4	0.887	INTRON aret
2L	5663599	2L_5663599_SNP [dm3] 2L_5663599_SNP [dm6]	G	T	5.606e^-4	0.887	INTRON Hsp60C
2L	5893195	2L_5893195_SNP [dm3] 2L_5893195_SNP [dm6]	G	T	5.606e^-4	0.887	NON_SYNONYMOUS_CODING Acp26Aa UPSTREAM Acp26Ab	TF binding site mE1_TFBS_sens
2L	5893196	2L_5893196_SNP [dm3] 2L_5893196_SNP [dm6]	C	A	5.606e^-4	0.887	NON_SYNONYMOUS_CODING Acp26Aa UPSTREAM Acp26Ab	TF binding site mE1_TFBS_sens
2R	17912285	2R_17912285_SNP [dm3] 2R_22024780_SNP [dm6]	A	T	5.623e^-4	0.887	INTRON CG34370
2R	17912286	2R_17912286_SNP [dm3] 2R_22024781_SNP [dm6]	A	G	5.623e^-4	0.887	INTRON CG34370
2R	17912288	2R_17912288_SNP [dm3] 2R_22024783_SNP [dm6]	G	A	5.623e^-4	0.887	INTRON CG34370
3R	7371865	3R_7371865_INS [dm3] 3R_11546143_INS [dm6]	A	AA	5.627e^-4	0.887	INTERGENIC
2R	13122263	2R_13122263_SNP [dm3] 2R_17234758_SNP [dm6]	T	C	5.656e^-4	0.887	INTRON mbl
2L	18193407	2L_18193407_SNP [dm3] 2L_18193407_SNP [dm6]	G	T	5.656e^-4	0.887	INTRON CG42750
2L	1340531	2L_1340531_SNP [dm3] 2L_1340531_SNP [dm6]	A	G	5.662e^-4	0.887	DOWNSTREAM CG33923 INTERGENIC
2R	10040723	2R_10040723_SNP [dm3] 2R_14153218_SNP [dm6]	A	C	5.662e^-4	0.887	UTR_5_PRIME pea UPSTREAM Rcd1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	11443414	2R_11443414_SNP [dm3] 2R_15555909_SNP [dm6]	T	C	5.662e^-4	0.887	UPSTREAM CG12963 INTRON CG12963
3R	24631767	3R_24631767_INS [dm3] 3R_28806045_INS [dm6]	T	TAATGTTTTT	5.710e^-4	0.887	UPSTREAM CheB98a INTERGENIC
3L	19103388	3L_19103388_SNP [dm3] 3L_19110288_SNP [dm6]	T	C	5.711e^-4	0.887	SYNONYMOUS_CODING CG14082
2R	17258238	2R_17258238_SNP [dm3] 2R_21370733_SNP [dm6]	G	T	5.723e^-4	0.887	INTRON cv-2	TF binding site mE1_TFBS_cad
2R	8339597	2R_8339597_SNP [dm3] 2R_12452092_SNP [dm6]	G	A	5.767e^-4	0.887	UTR_3_PRIME Dyb DOWNSTREAM Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9620726	3L_9620726_SNP [dm3] 3L_9627626_SNP [dm6]	C	T	5.787e^-4	0.887	NON_SYNONYMOUS_CODING Or67b DOWNSTREAM CG3335
3L	9620811	3L_9620811_SNP [dm3] 3L_9627711_SNP [dm6]	G	A	5.787e^-4	0.887	UPSTREAM CG8336 DOWNSTREAM CG3335 INTRON Or67b
3L	9620816	3L_9620816_SNP [dm3] 3L_9627716_SNP [dm6]	T	A	5.787e^-4	0.887	UPSTREAM CG8336 DOWNSTREAM CG3335 INTRON Or67b
3L	9621119	3L_9621119_SNP [dm3] 3L_9628019_SNP [dm6]	T	A	5.787e^-4	0.887	UPSTREAM CG8336 DOWNSTREAM CG3335 INTRON Or67b
3R	22902557	3R_22902557_SNP [dm3] 3R_27076835_SNP [dm6]	A	G	5.789e^-4	0.887	INTRON CG14257
3R	22902558	3R_22902558_SNP [dm3] 3R_27076836_SNP [dm6]	G	A	5.789e^-4	0.887	INTRON CG14257
3R	25371436	3R_25371436_SNP [dm3] 3R_29545714_SNP [dm6]	G	A	5.789e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	2922946	X_2922946_SNP [dm3] X_3028913_SNP [dm6]	T	C	5.789e^-4	0.887	INTRON kirre
2L	16546959	2L_16546959_SNP [dm3] 2L_16546959_SNP [dm6]	G	T	5.805e^-4	0.887	INTRON CG42389
2L	20091029	2L_20091029_SNP [dm3] 2L_20091029_SNP [dm6]	A	G	5.843e^-4	0.887	SYNONYMOUS_CODING CG10747 UPSTREAM CG10721	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16257485	3L_16257485_DEL [dm3] 3L_16264385_DEL [dm6]	AA	A	5.844e^-4	0.887	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	21389022	3R_21389022_SNP [dm3] 3R_25563300_SNP [dm6]	T	C	5.844e^-4	0.887	INTRON msi
2R	15668507	2R_15668507_DEL [dm3] 2R_19781002_DEL [dm6]	GTTA	T	5.908e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7976353	3L_7976353_SNP [dm3] 3L_7983253_SNP [dm6]	A	G	5.950e^-4	0.887	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11499397	2L_11499397_SNP [dm3] 2L_11499397_SNP [dm6]	C	T	5.971e^-4	0.887	UPSTREAM CG6488 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14200352	2L_14200352_SNP [dm3] 2L_14200352_SNP [dm6]	T	C	5.982e^-4	0.887	INTRON Dyrk2
2L	6559501	2L_6559501_SNP [dm3] 2L_6559501_SNP [dm6]	C	T	6.002e^-4	0.887	UTR_5_PRIME CG11043 UTR_3_PRIME CG9596 DOWNSTREAM CG9596 & 1 other	TF binding site mE1_TFBS_cad
3L	8583782	3L_8583782_SNP [dm3] 3L_8590682_SNP [dm6]	G	A	6.003e^-4	0.887	SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_chinmo
3R	19804622	3R_19804622_SNP [dm3] 3R_23978900_SNP [dm6]	G	A	6.012e^-4	0.887	INTRON CG31140
2L	11494802	2L_11494802_SNP [dm3] 2L_11494802_SNP [dm6]	A	C	6.045e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	11963797	3R_11963797_SNP [dm3] 3R_16138075_SNP [dm6]	T	G	6.118e^-4	0.887	INTRON Sb	TF binding site mE1_TFBS_inv
3R	14187174	3R_14187174_SNP [dm3] 3R_18361452_SNP [dm6]	C	G	6.145e^-4	0.887	UPSTREAM CG15803 & 1 other DOWNSTREAM CR45634 INTERGENIC
3L	2445313	3L_2445313_SNP [dm3] 3L_2445313_SNP [dm6]	C	T	6.165e^-4	0.887	SYNONYMOUS_CODING CG45186	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10090977	X_10090977_SNP [dm3] X_10196944_SNP [dm6]	C	A	6.206e^-4	0.887	INTRON CR44894
2L	18240595	2L_18240595_SNP [dm3] 2L_18240595_SNP [dm6]	C	A	6.216e^-4	0.887	INTRON CG42750
2L	9272711	2L_9272711_SNP [dm3] 2L_9272711_SNP [dm6]	C	T	6.240e^-4	0.887	INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
3L	20616024	3L_20616024_SNP [dm3] 3L_20622924_SNP [dm6]	G	A	6.282e^-4	0.887	DOWNSTREAM CR44684 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	8433931	2L_8433931_INS [dm3] 2L_8433931_INS [dm6]	T	TG	6.283e^-4	0.887	UPSTREAM grk DOWNSTREAM D12 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13918761	2L_13918761_SNP [dm3] 2L_13918761_SNP [dm6]	C	T	6.341e^-4	0.887	INTRON Ance-3
2R	4634660	2R_4634660_SNP [dm3] 2R_8747155_SNP [dm6]	G	A	6.348e^-4	0.887	INTRON CG8740	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8288524	2L_8288524_SNP [dm3] 2L_8288524_SNP [dm6]	C	T	6.354e^-4	0.887	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13957640	2L_13957640_SNP [dm3] 2L_13957640_SNP [dm6]	T	G	6.372e^-4	0.887	UTR_5_PRIME NimA UPSTREAM NimA
2R	7151061	2R_7151061_SNP [dm3] 2R_11263556_SNP [dm6]	G	A	6.392e^-4	0.887	INTERGENIC
2R	7151075	2R_7151075_SNP [dm3] 2R_11263570_SNP [dm6]	A	C	6.392e^-4	0.887	INTERGENIC
2R	7151106	2R_7151106_SNP [dm3] 2R_11263601_SNP [dm6]	A	T	6.392e^-4	0.887	INTERGENIC
2R	15843118	2R_15843118_SNP [dm3] 2R_19955613_SNP [dm6]	T	A	6.401e^-4	0.887	UPSTREAM CG44623 DOWNSTREAM CG44622 INTERGENIC
2R	7217150	2R_7217150_SNP [dm3] 2R_11329645_SNP [dm6]	T	G	6.401e^-4	0.887	INTRON sha	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7777775	3L_7777775_SNP [dm3] 3L_7784675_SNP [dm6]	T	A	6.401e^-4	0.887	INTRON CG32369
2L	9245908	2L_9245908_SNP [dm3] 2L_9245908_SNP [dm6]	T	C	6.469e^-4	0.887	UTR_3_PRIME tai
2L	9245940	2L_9245940_SNP [dm3] 2L_9245940_SNP [dm6]	A	C	6.469e^-4	0.887	UTR_3_PRIME tai
2L	936221	2L_936221_SNP [dm3] 2L_936221_SNP [dm6]	C	A	6.472e^-4	0.887	INTRON CG4341	TF binding site mE1_TFBS_Trl
X	8542402	X_8542402_SNP [dm3] X_8648369_SNP [dm6]	G	T	6.573e^-4	0.887	INTRON oc	silencer mE1_HDAC_PRE
3L	5643547	3L_5643547_SNP [dm3] 3L_5650447_SNP [dm6]	G	T	6.587e^-4	0.887	UTR_3_PRIME Blimp-1
2L	10322866	2L_10322866_SNP [dm3] 2L_10322866_SNP [dm6]	A	C	6.609e^-4	0.887	UPSTREAM CG4995 INTRON CG5381 & 1 other
2L	10349333	2L_10349333_SNP [dm3] 2L_10349333_SNP [dm6]	A	T	6.672e^-4	0.887	INTRON CG34367
3R	27456958	3R_27456958_SNP [dm3] 3R_31631236_SNP [dm6]	C	T	6.698e^-4	0.887	INTRON kek6
3R	11400179	3R_11400179_SNP [dm3] 3R_15574457_SNP [dm6]	C	T	6.703e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	10398286	3L_10398286_SNP [dm3] 3L_10405186_SNP [dm6]	T	G	6.707e^-4	0.887	INTERGENIC
3L	14334563	3L_14334563_SNP [dm3] 3L_14341463_SNP [dm6]	A	T	6.716e^-4	0.887	INTRON fz	TF binding site BDTNP1_TFBS_dl
X	12513597	X_12513597_INS [dm3] X_12619564_INS [dm6]	G	TGCATA	6.789e^-4	0.887	INTRON CG11085
3L	16169020	3L_16169020_SNP [dm3] 3L_16175920_SNP [dm6]	T	A	6.789e^-4	0.887	UPSTREAM CR45754 INTERGENIC
X	17150214	X_17150214_SNP [dm3] X_17256181_SNP [dm6]	A	C	6.798e^-4	0.887	INTRON f
2L	18152643	2L_18152643_SNP [dm3] 2L_18152643_SNP [dm6]	A	T	6.803e^-4	0.887	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2L	12226658	2L_12226658_SNP [dm3] 2L_12226658_SNP [dm6]	T	C	6.810e^-4	0.887	INTRON aret
3L	13254717	3L_13254717_SNP [dm3] 3L_13261617_SNP [dm6]	A	C	6.828e^-4	0.887	INTRON caps
2R	9515731	2R_9515731_SNP [dm3] 2R_13628226_SNP [dm6]	A	G	6.864e^-4	0.887	INTRON fas
3L	5134081	3L_5134081_SNP [dm3] 3L_5140981_SNP [dm6]	A	G	6.875e^-4	0.887	SYNONYMOUS_CODING CG10672 UPSTREAM CG4623 DOWNSTREAM CHMP2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	8119622	3L_8119622_SNP [dm3] 3L_8126522_SNP [dm6]	T	C	6.875e^-4	0.887	SYNONYMOUS_CODING Uba2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8119906	3L_8119906_SNP [dm3] 3L_8126806_SNP [dm6]	C	A	6.875e^-4	0.887	NON_SYNONYMOUS_CODING Uba2 UPSTREAM CdsA	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8121025	3L_8121025_SNP [dm3] 3L_8127925_SNP [dm6]	A	G	6.875e^-4	0.887	SPLICE_SITE_REGION CdsA UPSTREAM CdsA & 1 other INTRON CdsA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	8122167	3L_8122167_SNP [dm3] 3L_8129067_SNP [dm6]	G	C	6.875e^-4	0.887	INTRON CdsA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8123053	3L_8123053_SNP [dm3] 3L_8129953_SNP [dm6]	C	T	6.875e^-4	0.887	SYNONYMOUS_CODING CdsA	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8262377	3L_8262377_SNP [dm3] 3L_8269277_SNP [dm6]	C	G	6.875e^-4	0.887	INTRON Dscam4
3L	8262408	3L_8262408_SNP [dm3] 3L_8269308_SNP [dm6]	C	G	6.875e^-4	0.887	INTRON Dscam4
3L	8262549	3L_8262549_SNP [dm3] 3L_8269449_SNP [dm6]	G	C	6.875e^-4	0.887	INTRON Dscam4
3L	8262586	3L_8262586_SNP [dm3] 3L_8269486_SNP [dm6]	G	A	6.875e^-4	0.887	INTRON Dscam4
3L	8262625	3L_8262625_SNP [dm3] 3L_8269525_SNP [dm6]	G	A	6.875e^-4	0.887	INTRON Dscam4
3L	8262656	3L_8262656_SNP [dm3] 3L_8269556_SNP [dm6]	C	A	6.875e^-4	0.887	INTRON Dscam4
3L	8574181	3L_8574181_DEL [dm3] 3L_8581081_DEL [dm6]	TAAAGCA	T	6.875e^-4	0.887	INTRON CG43078
3L	8574194	3L_8574194_SNP [dm3] 3L_8581094_SNP [dm6]	A	T	6.875e^-4	0.887	INTRON CG43078
3R	20796107	3R_20796107_SNP [dm3] 3R_24970385_SNP [dm6]	G	A	6.875e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25096742	3R_25096742_SNP [dm3] 3R_29271020_SNP [dm6]	A	G	6.875e^-4	0.887	INTERGENIC	regulatory region REDfly_CRMs
3R	19759001	3R_19759001_SNP [dm3] 3R_23933279_SNP [dm6]	A	T	6.898e^-4	0.887	SYNONYMOUS_CODING RpS19b UPSTREAM CG5854 DOWNSTREAM CG13599	TF binding site BDTNP1_TFBS_dl
X	17163005	X_17163005_SNP [dm3] X_17268972_SNP [dm6]	T	C	6.901e^-4	0.887	SYNONYMOUS_CODING f INTRON f
2L	15311742	2L_15311742_SNP [dm3] 2L_15311742_SNP [dm6]	G	A	6.912e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA
2L	2706542	2L_2706542_SNP [dm3] 2L_2706542_SNP [dm6]	A	T	6.912e^-4	0.887	INTRON CG31690
2L	2707228	2L_2707228_SNP [dm3] 2L_2707228_SNP [dm6]	T	G	6.912e^-4	0.887	INTRON CG31690
2L	562025	2L_562025_SNP [dm3] 2L_562025_SNP [dm6]	A	G	6.912e^-4	0.887	NON_SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
2L	6819648	2L_6819648_SNP [dm3] 2L_6819648_SNP [dm6]	T	G	6.912e^-4	0.887	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2L	6904286	2L_6904286_SNP [dm3] 2L_6904286_SNP [dm6]	G	A	6.912e^-4	0.887	SYNONYMOUS_CODING Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6989509	2L_6989509_DEL [dm3] 2L_6989509_DEL [dm6]	AGGT	A	6.912e^-4	0.887	INTRON uif
2L	6989515	2L_6989515_INS [dm3] 2L_6989515_INS [dm6]	G	GGC	6.912e^-4	0.887	INTRON uif
2L	8603587	2L_8603587_SNP [dm3] 2L_8603587_SNP [dm6]	T	A	6.912e^-4	0.887	INTRON Sema-1a
2L	8603592	2L_8603592_SNP [dm3] 2L_8603592_SNP [dm6]	C	G	6.912e^-4	0.887	INTRON Sema-1a
2L	8603609	2L_8603609_SNP [dm3] 2L_8603609_SNP [dm6]	C	T	6.912e^-4	0.887	INTRON Sema-1a
2L	8603613	2L_8603613_SNP [dm3] 2L_8603613_SNP [dm6]	T	C	6.912e^-4	0.887	INTRON Sema-1a
2L	8603635	2L_8603635_SNP [dm3] 2L_8603635_SNP [dm6]	G	A	6.912e^-4	0.887	INTRON Sema-1a
3R	25072380	3R_25072380_SNP [dm3] 3R_29246658_SNP [dm6]	A	G	6.912e^-4	0.887	SYNONYMOUS_CODING SP1029	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10413329	X_10413329_SNP [dm3] X_10519296_SNP [dm6]	T	A	6.912e^-4	0.887	INTRON spri
X	18847748	X_18847748_SNP [dm3] X_18953715_SNP [dm6]	A	C	6.912e^-4	0.887	INTRON CG43759
X	4460041	X_4460041_SNP [dm3] X_4566008_SNP [dm6]	C	T	6.912e^-4	0.887	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	2365773	X_2365773_SNP [dm3] X_2471740_SNP [dm6]	A	C	6.915e^-4	0.887	INTRON trol
X	17163045	X_17163045_SNP [dm3] X_17269012_SNP [dm6]	C	A	6.927e^-4	0.887	INTRON f
3L	10466162	3L_10466162_DEL [dm3] 3L_10473062_DEL [dm6]	TT	T	6.932e^-4	0.887	INTERGENIC
X	13676552	X_13676552_SNP [dm3] X_13782519_SNP [dm6]	A	G	6.981e^-4	0.887	START_GAINED CG11103 UTR_5_PRIME CG11103 UPSTREAM CtsB1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8255669	2L_8255669_SNP [dm3] 2L_8255669_SNP [dm6]	A	T	7.058e^-4	0.887	INTRON CG8086
X	7484500	X_7484500_SNP [dm3] X_7590467_SNP [dm6]	G	C	7.074e^-4	0.887	INTERGENIC	regulatory region REDfly_CRMs
2L	9680012	2L_9680012_SNP [dm3] 2L_9680012_SNP [dm6]	G	C	7.083e^-4	0.887	INTERGENIC
2L	6328757	2L_6328757_SNP [dm3] 2L_6328757_SNP [dm6]	C	T	7.096e^-4	0.887	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad
2R	12541458	2R_12541458_SNP [dm3] 2R_16653953_SNP [dm6]	C	T	7.103e^-4	0.887	SYNONYMOUS_CODING Nach
3L	16168892	3L_16168892_SNP [dm3] 3L_16175792_SNP [dm6]	G	T	7.122e^-4	0.887	INTERGENIC
X	8916281	X_8916281_SNP [dm3] X_9022248_SNP [dm6]	C	A	7.171e^-4	0.887	INTRON CR43836 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2651543	3L_2651543_SNP [dm3] 3L_2651543_SNP [dm6]	C	T	7.173e^-4	0.887	SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
3L	2651573	3L_2651573_SNP [dm3] 3L_2651573_SNP [dm6]	C	G	7.173e^-4	0.887	NON_SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
3L	2651650	3L_2651650_DEL [dm3] 3L_2651650_DEL [dm6]	CTC	C	7.173e^-4	0.887	UPSTREAM Snup & 1 other INTRON Aats-pro
3L	7398851	3L_7398851_SNP [dm3] 3L_7405751_SNP [dm6]	G	A	7.173e^-4	0.887	UPSTREAM pncr015:3L INTERGENIC
3L	7398970	3L_7398970_SNP [dm3] 3L_7405870_SNP [dm6]	C	T	7.173e^-4	0.887	UPSTREAM pncr015:3L INTERGENIC
3R	14788555	3R_14788555_SNP [dm3] 3R_18962833_SNP [dm6]	C	T	7.173e^-4	0.887	INTRON CG42613 & 1 other
3R	14788579	3R_14788579_SNP [dm3] 3R_18962857_SNP [dm6]	C	G	7.173e^-4	0.887	INTRON CG42613 & 1 other
X	19493229	X_19493229_SNP [dm3] X_19599196_SNP [dm6]	C	T	7.173e^-4	0.887	UTR_3_PRIME RpS10b DOWNSTREAM CG14220 & 1 other
2R	7151295	2R_7151295_SNP [dm3] 2R_11263790_SNP [dm6]	A	C	7.179e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_ttk
3R	2531094	3R_2531094_SNP [dm3] 3R_6705372_SNP [dm6]	T	A	7.196e^-4	0.887	DOWNSTREAM Ccp84Aa INTERGENIC	TF binding site mE1_TFBS_HSA
2R	11423960	2R_11423960_SNP [dm3] 2R_15536455_SNP [dm6]	T	A	7.217e^-4	0.887	INTRON CG30471
X	19493314	X_19493314_SNP [dm3] X_19599281_SNP [dm6]	G	A	7.261e^-4	0.887	UTR_3_PRIME RpS10b DOWNSTREAM CG14220 & 1 other
3R	14707357	3R_14707357_SNP [dm3] 3R_18881635_SNP [dm6]	T	G	7.285e^-4	0.887	INTERGENIC
3R	2078773	3R_2078773_SNP [dm3] 3R_6253051_SNP [dm6]	A	G	7.327e^-4	0.887	INTERGENIC
2L	2687919	2L_2687919_DEL [dm3] 2L_2687919_DEL [dm6]	GG	G	7.362e^-4	0.887	INTRON CG31690
2L	6233429	2L_6233429_SNP [dm3] 2L_6233429_SNP [dm6]	T	G	7.422e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13907150	2R_13907150_SNP [dm3] 2R_18019645_SNP [dm6]	A	C	7.437e^-4	0.887	SYNONYMOUS_CODING CG5084 UPSTREAM CG10910	TF binding site mE1_TFBS_cad
3R	12331869	3R_12331869_SNP [dm3] 3R_16506147_SNP [dm6]	G	A	7.439e^-4	0.887	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10985713	2R_10985713_SNP [dm3] 2R_15098208_SNP [dm6]	C	G	7.477e^-4	0.887	INTERGENIC
2R	17730906	2R_17730906_DEL [dm3] 2R_21843401_DEL [dm6]	CTTTTGTATGG...	C	7.477e^-4	0.887	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17730918	2R_17730918_DEL [dm3] 2R_21843413_DEL [dm6]	CGA	C	7.477e^-4	0.887	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18003922	2R_18003922_SNP [dm3] 2R_22116417_SNP [dm6]	C	A	7.477e^-4	0.887	UPSTREAM Vrp1 DOWNSTREAM CG30281 INTRON Vrp1
3L	756443	3L_756443_SNP [dm3] 3L_756443_SNP [dm6]	A	G	7.477e^-4	0.887	UPSTREAM hng3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10658947	3R_10658947_SNP [dm3] 3R_14833225_SNP [dm6]	G	A	7.496e^-4	0.887	INTRON btsz
3R	10659174	3R_10659174_SNP [dm3] 3R_14833452_SNP [dm6]	A	G	7.496e^-4	0.887	INTRON btsz
3R	13266858	3R_13266858_SNP [dm3] 3R_17441136_SNP [dm6]	G	A	7.496e^-4	0.887	UPSTREAM CG14331 INTRON CG5873
3R	13464777	3R_13464777_SNP [dm3] 3R_17639055_SNP [dm6]	G	A	7.496e^-4	0.887	INTRON CG43175 EXON CR45222
3R	14511392	3R_14511392_SNP [dm3] 3R_18685670_SNP [dm6]	A	C	7.496e^-4	0.887	UTR_3_PRIME CG7708 DOWNSTREAM CG7708
3R	14800284	3R_14800284_SNP [dm3] 3R_18974562_SNP [dm6]	C	T	7.496e^-4	0.887	INTRON CG42613 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14800470	3R_14800470_SNP [dm3] 3R_18974748_SNP [dm6]	G	A	7.496e^-4	0.887	INTRON CG42613 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19203062	3R_19203062_SNP [dm3] 3R_23377340_SNP [dm6]	A	G	7.496e^-4	0.887	UTR_3_PRIME CG4393	TF binding site mE1_TFBS_inv
3R	24123448	3R_24123448_SNP [dm3] 3R_28297726_SNP [dm6]	C	A	7.496e^-4	0.887	INTERGENIC
3R	25628505	3R_25628505_SNP [dm3] 3R_29802783_SNP [dm6]	G	A	7.496e^-4	0.887	SPLICE_SITE_REGION CG7834 UPSTREAM CG7789 INTRON CG7834	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	3261224	3R_3261224_SNP [dm3] 3R_7435502_SNP [dm6]	C	T	7.496e^-4	0.887	INTERGENIC
3R	3281209	3R_3281209_SNP [dm3] 3R_7455487_SNP [dm6]	A	T	7.496e^-4	0.887	INTERGENIC
3R	7721225	3R_7721225_SNP [dm3] 3R_11895503_SNP [dm6]	T	C	7.496e^-4	0.887	SYNONYMOUS_CODING Cad87A
3R	9696419	3R_9696419_SNP [dm3] 3R_13870697_SNP [dm6]	T	G	7.496e^-4	0.887	INTRON E5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9843937	X_9843937_SNP [dm3] X_9949904_SNP [dm6]	A	G	7.505e^-4	0.887	INTERGENIC
3R	13271579	3R_13271579_SNP [dm3] 3R_17445857_SNP [dm6]	C	A	7.543e^-4	0.887	DOWNSTREAM Eh INTRON CG5873
3R	13271588	3R_13271588_SNP [dm3] 3R_17445866_SNP [dm6]	C	A	7.543e^-4	0.887	DOWNSTREAM Eh INTRON CG5873
3R	13271592	3R_13271592_SNP [dm3] 3R_17445870_SNP [dm6]	A	G	7.543e^-4	0.887	DOWNSTREAM Eh INTRON CG5873
3R	13271607	3R_13271607_SNP [dm3] 3R_17445885_SNP [dm6]	A	T	7.543e^-4	0.887	DOWNSTREAM Eh INTRON CG5873
3R	13271613	3R_13271613_SNP [dm3] 3R_17445891_SNP [dm6]	A	T	7.543e^-4	0.887	DOWNSTREAM Eh INTRON CG5873
3R	14917142	3R_14917142_SNP [dm3] 3R_19091420_SNP [dm6]	G	C	7.543e^-4	0.887	INTRON cdi	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	9395976	3R_9395976_SNP [dm3] 3R_13570254_SNP [dm6]	A	T	7.543e^-4	0.887	INTERGENIC
3R	9395993	3R_9395993_SNP [dm3] 3R_13570271_SNP [dm6]	A	T	7.543e^-4	0.887	INTERGENIC
3L	3295978	3L_3295978_SNP [dm3] 3L_3295978_SNP [dm6]	C	G	7.635e^-4	0.887	INTRON CG12009	TF binding site mE1_TFBS_cad
3L	3295987	3L_3295987_SNP [dm3] 3L_3295987_SNP [dm6]	G	A	7.635e^-4	0.887	INTRON CG12009	TF binding site mE1_TFBS_cad
X	13824614	X_13824614_SNP [dm3] X_13930581_SNP [dm6]	G	A	7.635e^-4	0.887	INTRON mamo
3R	4026898	3R_4026898_DEL [dm3] 3R_8201176_DEL [dm6]	TA	T	7.668e^-4	0.887	UPSTREAM CR43303 INTERGENIC	TF binding site mE1_TFBS_cad
3R	24123760	3R_24123760_SNP [dm3] 3R_28298038_SNP [dm6]	A	C	7.721e^-4	0.887	INTERGENIC
2L	1655443	2L_1655443_SNP [dm3] 2L_1655443_SNP [dm6]	C	T	7.726e^-4	0.887	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
2L	6264530	2L_6264530_SNP [dm3] 2L_6264530_SNP [dm6]	T	A	7.726e^-4	0.887	UPSTREAM CG13983 INTRON Ddr
2L	6589820	2L_6589820_SNP [dm3] 2L_6589820_SNP [dm6]	A	T	7.726e^-4	0.887	INTRON CG11319
2R	18598171	2R_18598171_SNP [dm3] 2R_22710666_SNP [dm6]	T	C	7.726e^-4	0.887	INTRON CG30275	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18598176	2R_18598176_SNP [dm3] 2R_22710671_SNP [dm6]	T	A	7.726e^-4	0.887	INTRON CG30275	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19689158	2R_19689158_INS [dm3] 2R_23801635_INS [dm6]	T	CGCAAAA	7.726e^-4	0.887	UTR_5_PRIME CG30177
2R	8622913	2R_8622913_SNP [dm3] 2R_12735408_SNP [dm6]	C	T	7.726e^-4	0.887	INTRON CG42663
3L	12146817	3L_12146817_SNP [dm3] 3L_12153717_SNP [dm6]	A	C	7.726e^-4	0.887	SYNONYMOUS_CODING Nrx-IV
3L	14428809	3L_14428809_SNP [dm3] 3L_14435709_SNP [dm6]	G	A	7.726e^-4	0.887	INTRON bbg
3L	3137612	3L_3137612_SNP [dm3] 3L_3137612_SNP [dm6]	G	A	7.726e^-4	0.887	INTRON CG11537
3L	8105829	3L_8105829_SNP [dm3] 3L_8112729_SNP [dm6]	T	C	7.726e^-4	0.887	DOWNSTREAM Arp3 INTRON CG7927
3L	8105833	3L_8105833_INS [dm3] 3L_8112733_INS [dm6]	A	AC	7.726e^-4	0.887	DOWNSTREAM Arp3 INTRON CG7927
3L	8106490	3L_8106490_SNP [dm3] 3L_8113390_SNP [dm6]	C	T	7.726e^-4	0.887	UTR_3_PRIME CG7927 DOWNSTREAM Arp3 & 1 other
3L	8112464	3L_8112464_SNP [dm3] 3L_8119364_SNP [dm6]	C	T	7.726e^-4	0.887	SYNONYMOUS_CODING msk
3L	8112572	3L_8112572_SNP [dm3] 3L_8119472_SNP [dm6]	T	C	7.726e^-4	0.887	SYNONYMOUS_CODING msk
3L	8114879	3L_8114879_SNP [dm3] 3L_8121779_SNP [dm6]	T	A	7.726e^-4	0.887	UPSTREAM ldbr DOWNSTREAM msk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8117365	3L_8117365_SNP [dm3] 3L_8124265_SNP [dm6]	T	G	7.726e^-4	0.887	SYNONYMOUS_CODING CG7550 DOWNSTREAM mRpL36 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8117402	3L_8117402_SNP [dm3] 3L_8124302_SNP [dm6]	A	C	7.726e^-4	0.887	NON_SYNONYMOUS_CODING CG7550 DOWNSTREAM mRpL36 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8117422	3L_8117422_SNP [dm3] 3L_8124322_SNP [dm6]	G	C	7.726e^-4	0.887	SYNONYMOUS_CODING CG7550 DOWNSTREAM mRpL36 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8119141	3L_8119141_SNP [dm3] 3L_8126041_SNP [dm6]	C	A	7.726e^-4	0.887	NON_SYNONYMOUS_CODING Uba2 UPSTREAM mRpL36	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11580042	3R_11580042_SNP [dm3] 3R_15754320_SNP [dm6]	C	T	7.726e^-4	0.887	INTERGENIC
3R	13966280	3R_13966280_SNP [dm3] 3R_18140558_SNP [dm6]	C	A	7.726e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15744495	3R_15744495_SNP [dm3] 3R_19918773_SNP [dm6]	C	A	7.726e^-4	0.887	SYNONYMOUS_CODING CG4770 UPSTREAM CG4465
3R	15744570	3R_15744570_SNP [dm3] 3R_19918848_SNP [dm6]	T	G	7.726e^-4	0.887	NON_SYNONYMOUS_CODING CG4770
3R	15744686	3R_15744686_SNP [dm3] 3R_19918964_SNP [dm6]	A	G	7.726e^-4	0.887	NON_SYNONYMOUS_CODING CG4770
3R	15744790	3R_15744790_SNP [dm3] 3R_19919068_SNP [dm6]	T	C	7.726e^-4	0.887	INTRON CG4770
3R	15747568	3R_15747568_SNP [dm3] 3R_19921846_SNP [dm6]	C	T	7.726e^-4	0.887	UTR_3_PRIME CG4462 UPSTREAM CR43282
3R	16578940	3R_16578940_SNP [dm3] 3R_20753218_SNP [dm6]	C	T	7.726e^-4	0.887	INTRON CG42322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	10413241	X_10413241_SNP [dm3] X_10519208_SNP [dm6]	C	T	7.726e^-4	0.887	INTRON spri
X	10413251	X_10413251_SNP [dm3] X_10519218_SNP [dm6]	T	G	7.726e^-4	0.887	INTRON spri
X	10413267	X_10413267_SNP [dm3] X_10519234_SNP [dm6]	A	T	7.726e^-4	0.887	INTRON spri
X	10413279	X_10413279_SNP [dm3] X_10519246_SNP [dm6]	T	A	7.726e^-4	0.887	INTRON spri
X	10413288	X_10413288_INS [dm3] X_10519255_INS [dm6]	T	TTGCAT	7.726e^-4	0.887	INTRON spri
X	10413312	X_10413312_SNP [dm3] X_10519279_SNP [dm6]	T	A	7.726e^-4	0.887	INTRON spri
X	10413330	X_10413330_SNP [dm3] X_10519297_SNP [dm6]	C	A	7.726e^-4	0.887	INTRON spri
X	10413334	X_10413334_SNP [dm3] X_10519301_SNP [dm6]	T	C	7.726e^-4	0.887	INTRON spri
X	10413338	X_10413338_SNP [dm3] X_10519305_SNP [dm6]	T	C	7.726e^-4	0.887	INTRON spri
X	10413346	X_10413346_SNP [dm3] X_10519313_SNP [dm6]	A	T	7.726e^-4	0.887	INTRON spri
X	10413356	X_10413356_INS [dm3] X_10519323_INS [dm6]	T	TGCAT	7.726e^-4	0.887	INTRON spri
X	10415205	X_10415205_SNP [dm3] X_10521172_SNP [dm6]	A	G	7.726e^-4	0.887	INTRON spri
X	10427977	X_10427977_SNP [dm3] X_10533944_SNP [dm6]	A	G	7.726e^-4	0.887	INTRON spri
X	11744922	X_11744922_SNP [dm3] X_11850889_SNP [dm6]	G	A	7.726e^-4	0.887	UPSTREAM CR45619 DOWNSTREAM p24-1 INTERGENIC	TF binding site mE1_TFBS_ttk
X	18847593	X_18847593_SNP [dm3] X_18953560_SNP [dm6]	G	T	7.726e^-4	0.887	INTRON CG43759
X	18847595	X_18847595_SNP [dm3] X_18953562_SNP [dm6]	A	G	7.726e^-4	0.887	INTRON CG43759
X	18847606	X_18847606_SNP [dm3] X_18953573_SNP [dm6]	C	T	7.726e^-4	0.887	INTRON CG43759
X	18847659	X_18847659_SNP [dm3] X_18953626_SNP [dm6]	A	T	7.726e^-4	0.887	INTRON CG43759
X	18847792	X_18847792_SNP [dm3] X_18953759_SNP [dm6]	C	T	7.726e^-4	0.887	INTRON CG43759
X	20331617	X_20331617_SNP [dm3] X_20460590_SNP [dm6]	C	T	7.726e^-4	0.887	INTRON CG32506
X	20331755	X_20331755_SNP [dm3] X_20460728_SNP [dm6]	A	C	7.726e^-4	0.887	INTRON CG32506	transposable element FlyBase
X	4406395	X_4406395_DEL [dm3] X_4512362_DEL [dm6]	CGCAC	C	7.726e^-4	0.887	INTRON CR32773
X	4406409	X_4406409_SNP [dm3] X_4512376_SNP [dm6]	C	T	7.726e^-4	0.887	INTRON CR32773
X	17206193	X_17206193_SNP [dm3] X_17312160_SNP [dm6]	C	G	7.728e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	17206201	X_17206201_SNP [dm3] X_17312168_SNP [dm6]	G	A	7.728e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	17206231	X_17206231_INS [dm3] X_17312198_INS [dm6]	A	AGTTTCCGTTTAGATAGTAA...	7.728e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12569491	3L_12569491_DEL [dm3] 3L_12576391_DEL [dm6]	TT	T	7.750e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
X	17569024	X_17569024_SNP [dm3] X_17674991_SNP [dm6]	G	T	7.762e^-4	0.887	INTRON chas
X	12513570	X_12513570_SNP [dm3] X_12619537_SNP [dm6]	A	T	7.802e^-4	0.887	INTRON CG11085
2L	3532247	2L_3532247_SNP [dm3] 2L_3532247_SNP [dm6]	T	G	7.803e^-4	0.887	INTRON Che-13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	4726327	2L_4726327_SNP [dm3] 2L_4726327_SNP [dm6]	C	G	7.803e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12049653	2L_12049653_SNP [dm3] 2L_12049653_SNP [dm6]	G	T	7.817e^-4	0.887	UTR_5_PRIME CG14945 UPSTREAM CG14945 & 1 other
2L	2006467	2L_2006467_SNP [dm3] 2L_2006467_SNP [dm6]	T	C	7.817e^-4	0.887	UPSTREAM CR45712 & 1 other DOWNSTREAM CG15353 INTERGENIC
2L	1675984	2L_1675984_SNP [dm3] 2L_1675984_SNP [dm6]	T	C	7.828e^-4	0.887	INTRON chinmo
2L	3530209	2L_3530209_SNP [dm3] 2L_3530209_SNP [dm6]	G	A	7.828e^-4	0.887	SYNONYMOUS_CODING Spindly UPSTREAM Che-13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	11757823	2R_11757823_SNP [dm3] 2R_15870318_SNP [dm6]	C	T	7.846e^-4	0.887	UTR_3_PRIME sli
3R	10838880	3R_10838880_SNP [dm3] 3R_15013158_SNP [dm6]	C	T	7.846e^-4	0.887	INTERGENIC
3R	10838912	3R_10838912_SNP [dm3] 3R_15013190_SNP [dm6]	G	T	7.846e^-4	0.887	INTERGENIC
3R	10838913	3R_10838913_SNP [dm3] 3R_15013191_SNP [dm6]	G	T	7.846e^-4	0.887	INTERGENIC
3R	15202691	3R_15202691_SNP [dm3] 3R_19376969_SNP [dm6]	T	G	7.846e^-4	0.887	NON_SYNONYMOUS_CODING CG31245 UPSTREAM CG31404 INTRON Ino80
3R	21751179	3R_21751179_SNP [dm3] 3R_25925457_SNP [dm6]	C	A	7.846e^-4	0.887	INTRON CCAP-R
3R	24688303	3R_24688303_SNP [dm3] 3R_28862581_SNP [dm6]	A	T	7.846e^-4	0.887	INTRON spg	TF binding site BDTNP1_TFBS_dl
X	6515717	X_6515717_SNP [dm3] X_6621684_SNP [dm6]	C	A	7.846e^-4	0.887	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6515720	X_6515720_SNP [dm3] X_6621687_SNP [dm6]	A	T	7.846e^-4	0.887	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1520373	2L_1520373_SNP [dm3] 2L_1520373_SNP [dm6]	T	A	7.861e^-4	0.887	START_GAINED CG44072 UTR_5_PRIME CG44072 UPSTREAM Or22a
2R	14160169	2R_14160169_SNP [dm3] 2R_18272664_SNP [dm6]	A	G	7.894e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	7757152	X_7757152_INS [dm3] X_7863119_INS [dm6]	C	CC	7.894e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19186645	2R_19186645_SNP [dm3] 2R_23299122_SNP [dm6]	T	C	7.928e^-4	0.887	INTERGENIC
3R	25850093	3R_25850093_SNP [dm3] 3R_30024371_SNP [dm6]	A	T	7.940e^-4	0.887	INTRON Axn
2R	8784973	2R_8784973_SNP [dm3] 2R_12897468_SNP [dm6]	T	C	7.950e^-4	0.887	INTRON vg
2R	8785011	2R_8785011_SNP [dm3] 2R_12897506_SNP [dm6]	A	G	7.950e^-4	0.887	INTRON vg
2R	8785013	2R_8785013_SNP [dm3] 2R_12897508_SNP [dm6]	A	C	7.950e^-4	0.887	INTRON vg
2L	18222542	2L_18222542_SNP [dm3] 2L_18222542_SNP [dm6]	T	A	7.954e^-4	0.887	INTRON CG42750
2L	18222544	2L_18222544_SNP [dm3] 2L_18222544_SNP [dm6]	A	T	7.954e^-4	0.887	INTRON CG42750
2R	8924130	2R_8924130_SNP [dm3] 2R_13036625_SNP [dm6]	A	T	8.034e^-4	0.887	INTERGENIC
3L	22177130	3L_22177130_SNP [dm3] 3L_22184030_SNP [dm6]	G	A	8.048e^-4	0.887	UTR_5_PRIME olf413	TF binding site BDTNP1_TFBS_dl
3R	11303967	3R_11303967_SNP [dm3] 3R_15478245_SNP [dm6]	G	T	8.048e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5166576	3L_5166576_SNP [dm3] 3L_5173476_SNP [dm6]	C	G	8.089e^-4	0.887	INTRON shep
3L	5166578	3L_5166578_SNP [dm3] 3L_5173478_SNP [dm6]	G	A	8.089e^-4	0.887	INTRON shep
3L	14432935	3L_14432935_SNP [dm3] 3L_14439835_SNP [dm6]	T	C	8.100e^-4	0.887	INTRON bbg
X	8812728	X_8812728_SNP [dm3] X_8918695_SNP [dm6]	T	A	8.170e^-4	0.887	DOWNSTREAM CR44111 INTRON rdgA
X	12409603	X_12409603_SNP [dm3] X_12515570_SNP [dm6]	A	C	8.175e^-4	0.887	INTRON CG2556
3R	19804234	3R_19804234_SNP [dm3] 3R_23978512_SNP [dm6]	A	T	8.182e^-4	0.887	INTRON CG31140
X	6387107	X_6387107_SNP [dm3] X_6493074_SNP [dm6]	T	A	8.182e^-4	0.887	INTRON CG42340
3L	3080558	3L_3080558_SNP [dm3] 3L_3080558_SNP [dm6]	A	G	8.190e^-4	0.887	INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	16304250	3R_16304250_SNP [dm3] 3R_20478528_SNP [dm6]	G	A	8.225e^-4	0.887	INTRON Gfrl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3507204	3L_3507204_SNP [dm3] 3L_3507204_SNP [dm6]	T	C	8.240e^-4	0.887	SYNONYMOUS_CODING CG42324	TF binding site mE1_TFBS_cad
3L	3507312	3L_3507312_SNP [dm3] 3L_3507312_SNP [dm6]	G	A	8.240e^-4	0.887	SYNONYMOUS_CODING CG42324	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4564528	3L_4564528_SNP [dm3] 3L_4564528_SNP [dm6]	T	C	8.240e^-4	0.887	INTRON CG42540
3R	16762461	3R_16762461_SNP [dm3] 3R_20936739_SNP [dm6]	G	C	8.262e^-4	0.887	INTRON CG31191
3R	9948317	3R_9948317_INS [dm3] 3R_14122595_INS [dm6]	T	TAATT	8.262e^-4	0.887	UPSTREAM twf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24656621	3R_24656621_SNP [dm3] 3R_28830899_SNP [dm6]	C	T	8.278e^-4	0.887	INTRON WASp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	24656626	3R_24656626_SNP [dm3] 3R_28830904_SNP [dm6]	A	G	8.278e^-4	0.887	INTRON WASp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	12064465	3L_12064465_SNP [dm3] 3L_12071365_SNP [dm6]	A	G	8.309e^-4	0.887	INTRON Sema-5c	TF binding site mE1_TFBS_chinmo
3L	8660444	3L_8660444_SNP [dm3] 3L_8667344_SNP [dm6]	T	A	8.309e^-4	0.887	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	22897119	3R_22897119_SNP [dm3] 3R_27071397_SNP [dm6]	G	A	8.311e^-4	0.887	INTERGENIC
3R	22883245	3R_22883245_SNP [dm3] 3R_27057523_SNP [dm6]	T	G	8.318e^-4	0.887	DOWNSTREAM Nep5 & 1 other INTRON RYa-R
3R	24704867	3R_24704867_SNP [dm3] 3R_28879145_SNP [dm6]	T	A	8.318e^-4	0.887	NON_SYNONYMOUS_CODING CG14523 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24704900	3R_24704900_SNP [dm3] 3R_28879178_SNP [dm6]	G	T	8.318e^-4	0.887	NON_SYNONYMOUS_CODING CG14523 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24706167	3R_24706167_SNP [dm3] 3R_28880445_SNP [dm6]	T	A	8.318e^-4	0.887	UPSTREAM CG14527 & 1 other INTRON CG33203	TF binding site mE1_TFBS_cad
3R	24720424	3R_24720424_SNP [dm3] 3R_28894702_SNP [dm6]	G	A	8.318e^-4	0.887	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo
3R	9695415	3R_9695415_SNP [dm3] 3R_13869693_SNP [dm6]	A	G	8.318e^-4	0.887	INTRON E5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6336532	2L_6336532_SNP [dm3] 2L_6336532_SNP [dm6]	A	G	8.408e^-4	0.887	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10685239	2R_10685239_SNP [dm3] 2R_14797734_SNP [dm6]	C	T	8.454e^-4	0.887	UPSTREAM kn INTRON kn
2R	5443865	2R_5443865_SNP [dm3] 2R_9556360_SNP [dm6]	C	T	8.473e^-4	0.887	INTERGENIC
3L	11845955	3L_11845955_SNP [dm3] 3L_11852855_SNP [dm6]	T	A	8.473e^-4	0.887	INTRON CG44837
2L	18216851	2L_18216851_SNP [dm3] 2L_18216851_SNP [dm6]	A	G	8.474e^-4	0.887	INTRON CG42750
2L	18222758	2L_18222758_DEL [dm3] 2L_18222758_DEL [dm6]	ATTGATAATT	C	8.474e^-4	0.887	INTRON CG42750
2L	18276314	2L_18276314_SNP [dm3] 2L_18276314_SNP [dm6]	G	C	8.476e^-4	0.887	UPSTREAM CG42750 INTERGENIC
2L	9273823	2L_9273823_SNP [dm3] 2L_9273823_SNP [dm6]	A	T	8.476e^-4	0.887	INTRON Ggamma30A
2R	1373634	2R_1373634_SNP [dm3] 2R_5486129_SNP [dm6]	C	T	8.476e^-4	0.887	INTRON CG30440
3L	5728191	3L_5728191_SNP [dm3] 3L_5735091_SNP [dm6]	T	A	8.515e^-4	0.887	INTRON sif
2R	5648610	2R_5648610_SNP [dm3] 2R_9761105_SNP [dm6]	T	A	8.571e^-4	0.887	INTRON trpl
2R	5648613	2R_5648613_SNP [dm3] 2R_9761108_SNP [dm6]	A	T	8.571e^-4	0.887	INTRON trpl
2L	9229394	2L_9229394_SNP [dm3] 2L_9229394_SNP [dm6]	C	G	8.573e^-4	0.887	INTRON tai
2L	18186729	2L_18186729_SNP [dm3] 2L_18186729_SNP [dm6]	G	A	8.587e^-4	0.887	UPSTREAM CR44900 INTRON CG42750
3R	19084063	3R_19084063_SNP [dm3] 3R_23258341_SNP [dm6]	C	T	8.611e^-4	0.887	UPSTREAM CG13827 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10257494	3L_10257494_SNP [dm3] 3L_10264394_SNP [dm6]	T	G	8.642e^-4	0.887	NON_SYNONYMOUS_CODING can
3L	15229859	3L_15229859_SNP [dm3] 3L_15236759_SNP [dm6]	A	G	8.642e^-4	0.887	SYNONYMOUS_CODING Tollo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	15229862	3L_15229862_SNP [dm3] 3L_15236762_SNP [dm6]	T	C	8.642e^-4	0.887	SYNONYMOUS_CODING Tollo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	6365355	3L_6365355_DEL [dm3] 3L_6372255_DEL [dm6]	CTAGTCGCC	C	8.642e^-4	0.887	INTERGENIC
3L	6365427	3L_6365427_SNP [dm3] 3L_6372327_SNP [dm6]	T	G	8.642e^-4	0.887	INTERGENIC
3L	6365452	3L_6365452_SNP [dm3] 3L_6372352_SNP [dm6]	A	G	8.642e^-4	0.887	INTERGENIC
3R	21183244	3R_21183244_SNP [dm3] 3R_25357522_SNP [dm6]	C	T	8.666e^-4	0.887	UPSTREAM CG11913 INTRON Fur1
3R	21184730	3R_21184730_SNP [dm3] 3R_25359008_SNP [dm6]	G	A	8.666e^-4	0.887	SYNONYMOUS_CODING CG11913 INTRON Fur1
3R	21184799	3R_21184799_SNP [dm3] 3R_25359077_SNP [dm6]	G	C	8.666e^-4	0.887	SYNONYMOUS_CODING CG11913 INTRON Fur1	TF binding site mE1_TFBS_sens
3R	21184925	3R_21184925_SNP [dm3] 3R_25359203_SNP [dm6]	C	T	8.666e^-4	0.887	SYNONYMOUS_CODING CG11913 INTRON Fur1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21185636	3R_21185636_SNP [dm3] 3R_25359914_SNP [dm6]	T	C	8.666e^-4	0.887	SYNONYMOUS_CODING CG11913 INTRON Fur1
3R	4754404	3R_4754404_INS [dm3] 3R_8928682_INS [dm6]	G	GAAG	8.666e^-4	0.887	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2L	9272676	2L_9272676_SNP [dm3] 2L_9272676_SNP [dm6]	A	C	8.688e^-4	0.887	INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
2R	14551369	2R_14551369_SNP [dm3] 2R_18663864_SNP [dm6]	T	C	8.696e^-4	0.887	DOWNSTREAM CG33136 INTERGENIC
2R	16988075	2R_16988075_SNP [dm3] 2R_21100570_SNP [dm6]	A	G	8.705e^-4	0.887	SYNONYMOUS_CODING CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
3L	13224731	3L_13224731_SNP [dm3] 3L_13231631_SNP [dm6]	C	T	8.710e^-4	0.887	INTRON caps
3L	9724592	3L_9724592_SNP [dm3] 3L_9731492_SNP [dm6]	T	G	8.710e^-4	0.887	SYNONYMOUS_CODING CG6749 DOWNSTREAM ATPsyn-b	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	9724871	3L_9724871_SNP [dm3] 3L_9731771_SNP [dm6]	G	A	8.710e^-4	0.887	SYNONYMOUS_CODING CG6749 DOWNSTREAM ATPsyn-b	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25356335	3R_25356335_SNP [dm3] 3R_29530613_SNP [dm6]	T	A	8.733e^-4	0.887	INTERGENIC
X	8940155	X_8940155_SNP [dm3] X_9046122_SNP [dm6]	T	C	8.744e^-4	0.887	INTRON CR43836 & 1 other
2L	11052635	2L_11052635_SNP [dm3] 2L_11052635_SNP [dm6]	A	T	8.748e^-4	0.887	INTRON Samuel
2L	11052637	2L_11052637_SNP [dm3] 2L_11052637_SNP [dm6]	G	A	8.748e^-4	0.887	INTRON Samuel
2L	11052638	2L_11052638_SNP [dm3] 2L_11052638_SNP [dm6]	C	T	8.748e^-4	0.887	INTRON Samuel
3R	1775505	3R_1775505_SNP [dm3] 3R_5949783_SNP [dm6]	T	C	8.773e^-4	0.887	INTRON CG34113
3L	20964980	3L_20964980_SNP [dm3] 3L_20971880_SNP [dm6]	T	C	8.773e^-4	0.887	NON_SYNONYMOUS_CODING CG33286	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8792759	2L_8792759_SNP [dm3] 2L_8792759_SNP [dm6]	A	G	8.787e^-4	0.887	INTERGENIC
2R	5443934	2R_5443934_SNP [dm3] 2R_9556429_SNP [dm6]	A	C	8.798e^-4	0.887	INTERGENIC
3R	16891400	3R_16891400_SNP [dm3] 3R_21065678_SNP [dm6]	T	G	8.815e^-4	0.887	UPSTREAM AnxB9 INTRON AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	19484520	X_19484520_SNP [dm3] X_19590487_SNP [dm6]	C	T	8.815e^-4	0.887	UPSTREAM CG14219 INTERGENIC
2L	3451268	2L_3451268_SNP [dm3] 2L_3451268_SNP [dm6]	T	A	8.832e^-4	0.887	INTRON Snx1	TF binding site mE1_TFBS_cad
3L	8119966	3L_8119966_SNP [dm3] 3L_8126866_SNP [dm6]	T	C	8.836e^-4	0.887	NON_SYNONYMOUS_CODING Uba2 UPSTREAM CdsA	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	11442794	2R_11442794_SNP [dm3] 2R_15555289_SNP [dm6]	A	T	8.865e^-4	0.887	UPSTREAM CG12963 INTERGENIC
2R	11442796	2R_11442796_SNP [dm3] 2R_15555291_SNP [dm6]	A	T	8.865e^-4	0.887	UPSTREAM CG12963 INTERGENIC
2R	12506025	2R_12506025_DEL [dm3] 2R_16618520_DEL [dm6]	AAA	A	8.865e^-4	0.887	INTRON CG5065
X	17149678	X_17149678_SNP [dm3] X_17255645_SNP [dm6]	A	T	8.865e^-4	0.887	INTRON f
X	17149722	X_17149722_SNP [dm3] X_17255689_SNP [dm6]	C	T	8.865e^-4	0.887	INTRON f
3R	24627229	3R_24627229_SNP [dm3] 3R_28801507_SNP [dm6]	G	A	8.871e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2687943	2L_2687943_SNP [dm3] 2L_2687943_SNP [dm6]	G	T	8.888e^-4	0.887	INTRON CG31690
2R	7150750	2R_7150750_SNP [dm3] 2R_11263245_SNP [dm6]	C	G	8.903e^-4	0.887	INTERGENIC
2R	18353347	2R_18353347_SNP [dm3] 2R_22465842_SNP [dm6]	A	G	8.905e^-4	0.887	INTRON CG10384
2L	7254649	2L_7254649_SNP [dm3] 2L_7254649_SNP [dm6]	G	T	8.906e^-4	0.887	DOWNSTREAM Wnt4 INTERGENIC
3R	14187037	3R_14187037_SNP [dm3] 3R_18361315_SNP [dm6]	T	C	8.943e^-4	0.887	UPSTREAM CG15803 & 1 other DOWNSTREAM CR45634 INTERGENIC
3R	14187046	3R_14187046_SNP [dm3] 3R_18361324_SNP [dm6]	C	T	8.943e^-4	0.887	UPSTREAM CG15803 & 1 other DOWNSTREAM CR45634 INTERGENIC
2R	9606531	2R_9606531_SNP [dm3] 2R_13719026_SNP [dm6]	T	A	8.974e^-4	0.887	INTRON fas
X	1868231	X_1868231_SNP [dm3] X_1974198_SNP [dm6]	G	A	8.974e^-4	0.887	INTRON Hr4	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12163946	2R_12163946_SNP [dm3] 2R_16276441_SNP [dm6]	T	C	8.988e^-4	0.887	NON_SYNONYMOUS_CODING CG33017
2R	12163992	2R_12163992_SNP [dm3] 2R_16276487_SNP [dm6]	T	A	8.988e^-4	0.887	SYNONYMOUS_CODING CG33017
X	17941120	X_17941120_SNP [dm3] X_18047087_SNP [dm6]	A	C	9.013e^-4	0.887	NON_SYNONYMOUS_CODING CG15373 INTRON Sh	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17941125	X_17941125_SNP [dm3] X_18047092_SNP [dm6]	T	C	9.013e^-4	0.887	SYNONYMOUS_CODING CG15373 INTRON Sh	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17941210	X_17941210_SNP [dm3] X_18047177_SNP [dm6]	T	A	9.013e^-4	0.887	INTRON Sh & 1 other	TF binding site mE1_TFBS_chinmo
2R	4135687	2R_4135687_SNP [dm3] 2R_8248182_SNP [dm6]	G	T	9.038e^-4	0.887	DOWNSTREAM CG44439 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	17050682	2R_17050682_SNP [dm3] 2R_21163177_SNP [dm6]	C	T	9.039e^-4	0.887	INTRON CG4266
3L	10466173	3L_10466173_SNP [dm3] 3L_10473073_SNP [dm6]	C	A	9.039e^-4	0.887	INTERGENIC
3L	10466292	3L_10466292_SNP [dm3] 3L_10473192_SNP [dm6]	C	T	9.039e^-4	0.887	INTERGENIC
3L	1321786	3L_1321786_SNP [dm3] 3L_1321786_SNP [dm6]	G	C	9.039e^-4	0.887	DOWNSTREAM CG9184 INTRON Myo61F
3R	11854711	3R_11854711_SNP [dm3] 3R_16028989_SNP [dm6]	A	G	9.039e^-4	0.887	INTRON pnr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	26532745	3R_26532745_INS [dm3] 3R_30707023_INS [dm6]	A	ATT	9.039e^-4	0.887	UPSTREAM CG31010 INTERGENIC
3R	26532748	3R_26532748_SNP [dm3] 3R_30707026_SNP [dm6]	T	A	9.039e^-4	0.887	UPSTREAM CG31010 INTERGENIC
3R	26532753	3R_26532753_SNP [dm3] 3R_30707031_SNP [dm6]	T	A	9.039e^-4	0.887	UPSTREAM CG31010 INTERGENIC
3R	26532794	3R_26532794_SNP [dm3] 3R_30707072_SNP [dm6]	G	T	9.039e^-4	0.887	UPSTREAM CG31010 INTERGENIC
3R	26532796	3R_26532796_INS [dm3] 3R_30707074_INS [dm6]	T	TC	9.039e^-4	0.887	UPSTREAM CG31010 INTERGENIC
X	16465879	X_16465879_SNP [dm3] X_16571846_SNP [dm6]	G	A	9.039e^-4	0.887	INTRON CanA-14F
2L	8636963	2L_8636963_SNP [dm3] 2L_8636963_SNP [dm6]	A	G	9.045e^-4	0.887	INTRON Sema-1a
2L	2856984	2L_2856984_SNP [dm3] 2L_2856984_SNP [dm6]	A	G	9.056e^-4	0.887	UTR_3_PRIME RpS21 UPSTREAM CG2991 DOWNSTREAM RpS21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	9634029	2L_9634029_SNP [dm3] 2L_9634029_SNP [dm6]	T	G	9.076e^-4	0.887	UPSTREAM Apoltp INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	2561041	X_2561041_SNP [dm3] X_2667008_SNP [dm6]	T	C	9.076e^-4	0.887	UPSTREAM sgg INTRON sgg
2L	14124228	2L_14124228_SNP [dm3] 2L_14124228_SNP [dm6]	A	G	9.095e^-4	0.887	INTERGENIC
3R	26363736	3R_26363736_SNP [dm3] 3R_30538014_SNP [dm6]	T	G	9.103e^-4	0.887	UPSTREAM tmod INTRON tmod
2L	766916	2L_766916_SNP [dm3] 2L_766916_SNP [dm6]	C	G	9.105e^-4	0.887	INTERGENIC
3R	13464558	3R_13464558_SNP [dm3] 3R_17638836_SNP [dm6]	T	A	9.161e^-4	0.887	UPSTREAM CR45222 INTRON CG43175 & 1 other
3L	5427848	3L_5427848_SNP [dm3] 3L_5434748_SNP [dm6]	T	C	9.168e^-4	0.887	INTRON CG34391
2L	13582423	2L_13582423_SNP [dm3] 2L_13582423_SNP [dm6]	G	A	9.173e^-4	0.887	UPSTREAM CR44973 INTRON kuz
2L	16402131	2L_16402131_SNP [dm3] 2L_16402131_SNP [dm6]	A	T	9.173e^-4	0.887	INTRON CG5888
2L	17458812	2L_17458812_SNP [dm3] 2L_17458812_SNP [dm6]	T	A	9.173e^-4	0.887	UPSTREAM CG18563 DOWNSTREAM BicD & 1 other INTERGENIC
2L	1998935	2L_1998935_SNP [dm3] 2L_1998935_SNP [dm6]	A	G	9.173e^-4	0.887	INTRON CG33543
2L	2818659	2L_2818659_SNP [dm3] 2L_2818659_SNP [dm6]	G	A	9.173e^-4	0.887	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3401519	2L_3401519_SNP [dm3] 2L_3401519_SNP [dm6]	G	A	9.173e^-4	0.887	INTERGENIC
2L	9124359	2L_9124359_SNP [dm3] 2L_9124359_SNP [dm6]	A	G	9.173e^-4	0.887	EXON CR44615	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	7239415	2L_7239415_SNP [dm3] 2L_7239415_SNP [dm6]	C	T	9.203e^-4	0.887	INTRON Ndae1
X	17162861	X_17162861_SNP [dm3] X_17268828_SNP [dm6]	T	C	9.203e^-4	0.887	SYNONYMOUS_CODING f INTRON f
X	17952323	X_17952323_INS [dm3] X_18058290_INS [dm6]	T	TTAAAGG	9.210e^-4	0.887	INTRON Sh
2L	18193435	2L_18193435_SNP [dm3] 2L_18193435_SNP [dm6]	T	C	9.231e^-4	0.887	INTRON CG42750
3R	11400337	3R_11400337_SNP [dm3] 3R_15574615_SNP [dm6]	T	C	9.234e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3R	11400380	3R_11400380_SNP [dm3] 3R_15574658_SNP [dm6]	C	G	9.234e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	7073079	3R_7073079_SNP [dm3] 3R_11247357_SNP [dm6]	G	A	9.235e^-4	0.887	DOWNSTREAM CR43283 & 1 other INTERGENIC
2R	5443874	2R_5443874_SNP [dm3] 2R_9556369_SNP [dm6]	A	G	9.273e^-4	0.887	INTERGENIC
3L	3755177	3L_3755177_SNP [dm3] 3L_3755177_SNP [dm6]	A	C	9.273e^-4	0.887	UTR_5_PRIME ppk27 INTRON CG32264
3L	3755178	3L_3755178_SNP [dm3] 3L_3755178_SNP [dm6]	T	C	9.273e^-4	0.887	START_GAINED ppk27 UTR_5_PRIME ppk27 INTRON CG32264
3L	3755193	3L_3755193_SNP [dm3] 3L_3755193_SNP [dm6]	A	G	9.273e^-4	0.887	UTR_5_PRIME ppk27 INTRON CG32264
2L	1520502	2L_1520502_SNP [dm3] 2L_1520502_SNP [dm6]	T	A	9.278e^-4	0.887	UTR_5_PRIME Or22a UPSTREAM CG44072
X	5323249	X_5323249_SNP [dm3] X_5429216_SNP [dm6]	T	G	9.286e^-4	0.887	UPSTREAM CG15784 DOWNSTREAM CG16756 EXON CR45517
2R	11423982	2R_11423982_SNP [dm3] 2R_15536477_SNP [dm6]	A	T	9.295e^-4	0.887	INTRON CG30471
3L	7265352	3L_7265352_SNP [dm3] 3L_7272252_SNP [dm6]	A	G	9.318e^-4	0.887	INTRON unc-13-4A	TF binding site mE1_TFBS_cad
2R	6894622	2R_6894622_SNP [dm3] 2R_11007117_SNP [dm6]	A	C	9.364e^-4	0.887	INTRON luna
3R	16756693	3R_16756693_SNP [dm3] 3R_20930971_SNP [dm6]	C	A	9.370e^-4	0.887	INTRON CG31191
2R	19975175	2R_19975175_SNP [dm3] 2R_24087652_SNP [dm6]	G	A	9.387e^-4	0.887	SYNONYMOUS_CODING snama
2R	18898547	2R_18898547_SNP [dm3] 2R_23011024_SNP [dm6]	T	C	9.388e^-4	0.887	DOWNSTREAM CG42741 INTRON twi
2L	15740763	2L_15740763_SNP [dm3] 2L_15740763_SNP [dm6]	T	A	9.443e^-4	0.887	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17730860	2R_17730860_SNP [dm3] 2R_21843355_SNP [dm6]	A	T	9.459e^-4	0.887	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17730936	2R_17730936_SNP [dm3] 2R_21843431_SNP [dm6]	T	A	9.459e^-4	0.887	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5911815	X_5911815_SNP [dm3] X_6017782_SNP [dm6]	A	C	9.459e^-4	0.887	INTERGENIC
2L	10322883	2L_10322883_SNP [dm3] 2L_10322883_SNP [dm6]	C	T	9.477e^-4	0.887	UPSTREAM CG4995 INTRON CG5381 & 1 other
2L	10322889	2L_10322889_SNP [dm3] 2L_10322889_SNP [dm6]	T	C	9.477e^-4	0.887	UPSTREAM CG4995 INTRON CG5381 & 1 other
2L	2644388	2L_2644388_SNP [dm3] 2L_2644388_SNP [dm6]	T	C	9.477e^-4	0.887	INTERGENIC
2L	2853928	2L_2853928_SNP [dm3] 2L_2853928_SNP [dm6]	T	A	9.477e^-4	0.887	INTRON CG3104	TF binding site mE1_TFBS_cnc
2L	2854000	2L_2854000_SNP [dm3] 2L_2854000_SNP [dm6]	T	C	9.477e^-4	0.887	INTRON CG3104	TF binding site mE1_TFBS_cnc
2L	3432719	2L_3432719_SNP [dm3] 2L_3432719_SNP [dm6]	G	C	9.477e^-4	0.887	INTERGENIC
2L	3432755	2L_3432755_SNP [dm3] 2L_3432755_SNP [dm6]	T	A	9.477e^-4	0.887	INTERGENIC
2L	3531844	2L_3531844_SNP [dm3] 2L_3531844_SNP [dm6]	A	T	9.477e^-4	0.887	SYNONYMOUS_CODING Che-13	TF binding site mE1_TFBS_sens
2L	3532202	2L_3532202_SNP [dm3] 2L_3532202_SNP [dm6]	C	T	9.477e^-4	0.887	INTRON Che-13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	3544469	2L_3544469_SNP [dm3] 2L_3544469_SNP [dm6]	G	T	9.477e^-4	0.887	INTRON drm
2L	3575133	2L_3575133_SNP [dm3] 2L_3575133_SNP [dm6]	A	C	9.477e^-4	0.887	UPSTREAM CR43822 INTERGENIC
2L	3575164	2L_3575164_SNP [dm3] 2L_3575164_SNP [dm6]	A	C	9.477e^-4	0.887	UPSTREAM CR43822 INTERGENIC
2L	3575165	2L_3575165_SNP [dm3] 2L_3575165_SNP [dm6]	G	T	9.477e^-4	0.887	UPSTREAM CR43822 INTERGENIC
2L	3575181	2L_3575181_SNP [dm3] 2L_3575181_SNP [dm6]	G	T	9.477e^-4	0.887	UPSTREAM CR43822 INTERGENIC
2L	6414435	2L_6414435_INS [dm3] 2L_6414435_INS [dm6]	A	AGCTTTGTATTAAGTCTTCG...	9.477e^-4	0.887	UTR_3_PRIME CG13982 DOWNSTREAM Tig & 1 other
2L	9872828	2L_9872828_SNP [dm3] 2L_9872828_SNP [dm6]	A	T	9.477e^-4	0.887	INTRON nAChRalpha6
2R	19104977	2R_19104977_SNP [dm3] 2R_23217454_SNP [dm6]	T	C	9.478e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6136514	3R_6136514_SNP [dm3] 3R_10310792_SNP [dm6]	A	G	9.488e^-4	0.887	INTRON CG6293
X	17960812	X_17960812_SNP [dm3] X_18066779_SNP [dm6]	G	A	9.514e^-4	0.887	SYNONYMOUS_CODING Dhc16F
3L	3083830	3L_3083830_DEL [dm3] 3L_3083830_DEL [dm6]	CT	C	9.519e^-4	0.887	INTRON CG11486	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	3136924	3R_3136924_DEL [dm3] 3R_7311202_DEL [dm6]	GCTATGTTTGATCCCAACG...	G	9.548e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3L	16376878	3L_16376878_SNP [dm3] 3L_16383778_SNP [dm6]	T	C	9.561e^-4	0.887	SYNONYMOUS_CODING CG4729 UPSTREAM CG4729	TF binding site mE1_TFBS_sens
2R	18845018	2R_18845018_SNP [dm3] 2R_22957495_SNP [dm6]	C	T	9.567e^-4	0.887	UPSTREAM CR44780 INTERGENIC
2L	3523641	2L_3523641_SNP [dm3] 2L_3523641_SNP [dm6]	C	T	9.608e^-4	0.887	SYNONYMOUS_CODING Sr-CIV
2L	2823702	2L_2823702_SNP [dm3] 2L_2823702_SNP [dm6]	C	T	9.647e^-4	0.887	SYNONYMOUS_CODING CG3123 INTRON Duox
3L	2403343	3L_2403343_SNP [dm3] 3L_2403343_SNP [dm6]	C	A	9.647e^-4	0.887	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8576786	3L_8576786_SNP [dm3] 3L_8583686_SNP [dm6]	T	G	9.659e^-4	0.887	START_GAINED CG43078 UTR_5_PRIME CG43078 INTRON CG43078
3L	8577843	3L_8577843_SNP [dm3] 3L_8584743_SNP [dm6]	A	G	9.659e^-4	0.887	UPSTREAM CG43078 INTRON CG43078
3R	21752160	3R_21752160_SNP [dm3] 3R_25926438_SNP [dm6]	G	T	9.659e^-4	0.887	INTRON CCAP-R
3R	24695004	3R_24695004_SNP [dm3] 3R_28869282_SNP [dm6]	T	C	9.659e^-4	0.887	SYNONYMOUS_CODING spg UTR_3_PRIME spg	TF binding site mE1_TFBS_chinmo
2R	8300739	2R_8300739_SNP [dm3] 2R_12413234_SNP [dm6]	T	C	9.664e^-4	0.887	UPSTREAM Cpr49Ah INTERGENIC
3L	8729323	3L_8729323_DEL [dm3] 3L_8736223_DEL [dm6]	CCC	C	9.664e^-4	0.887	DOWNSTREAM Prm INTRON Prm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9723497	3L_9723497_SNP [dm3] 3L_9730397_SNP [dm6]	C	T	9.710e^-4	0.887	SYNONYMOUS_CODING ATPsyn-b DOWNSTREAM Naa60 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7717821	2L_7717821_SNP [dm3] 2L_7717821_SNP [dm6]	A	G	9.711e^-4	0.887	INTRON CG13793
2L	9527048	2L_9527048_SNP [dm3] 2L_9527048_SNP [dm6]	T	G	9.783e^-4	0.887	INTRON Oatp30B
X	20780029	X_20780029_SNP [dm3] X_20909002_SNP [dm6]	T	G	9.783e^-4	0.887	INTRON shakB
X	6515754	X_6515754_SNP [dm3] X_6621721_SNP [dm6]	C	A	9.783e^-4	0.887	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12432091	3L_12432091_SNP [dm3] 3L_12438991_SNP [dm6]	G	A	9.796e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16185639	3L_16185639_SNP [dm3] 3L_16192539_SNP [dm6]	C	A	9.796e^-4	0.887	INTERGENIC
2L	18234375	2L_18234375_SNP [dm3] 2L_18234375_SNP [dm6]	T	G	9.822e^-4	0.887	INTRON CG42750
3R	15319227	3R_15319227_SNP [dm3] 3R_19493505_SNP [dm6]	T	A	9.834e^-4	0.887	INTRON Dys

By genomic position
Variant impact
Gene name

LogMiu45 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results