DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.810e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

612 significant hits at p-value < 0.001.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	9716167	2R_9716167_SNP [dm3] 2R_13828662_SNP [dm6]	A	T	1.660e^-5	0.614	UPSTREAM CG6329 INTRON CG6329	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4197944	3L_4197944_SNP [dm3] 3L_4197944_SNP [dm6]	A	G	4.991e^-5	0.614	SYNONYMOUS_CODING CG43367	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4197972	3L_4197972_SNP [dm3] 3L_4197972_SNP [dm6]	C	T	4.991e^-5	0.614	SYNONYMOUS_CODING CG43367	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4197998	3L_4197998_SNP [dm3] 3L_4197998_SNP [dm6]	T	C	4.991e^-5	0.614	SYNONYMOUS_CODING CG43367	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4197941	3L_4197941_SNP [dm3] 3L_4197941_SNP [dm6]	G	C	5.518e^-5	0.614	SYNONYMOUS_CODING CG43367	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2586614	2L_2586614_SNP [dm3] 2L_2586614_SNP [dm6]	G	A	6.036e^-5	0.614	INTERGENIC
2L	2586636	2L_2586636_SNP [dm3] 2L_2586636_SNP [dm6]	G	A	6.036e^-5	0.614	INTERGENIC
2R	17782579	2R_17782579_SNP [dm3] 2R_21895074_SNP [dm6]	C	A	6.871e^-5	0.614	INTRON Fili
2R	17782568	2R_17782568_SNP [dm3] 2R_21895063_SNP [dm6]	G	A	8.606e^-5	0.614	INTRON Fili
2R	17782577	2R_17782577_INS [dm3] 2R_21895072_INS [dm6]	A	AT	8.606e^-5	0.614	INTRON Fili
2R	17782580	2R_17782580_SNP [dm3] 2R_21895075_SNP [dm6]	T	A	8.606e^-5	0.614	INTRON Fili
3L	18979056	3L_18979056_SNP [dm3] 3L_18985956_SNP [dm6]	A	G	9.073e^-5	0.614	UTR_3_PRIME CG11619 DOWNSTREAM CG14075
3L	11141452	3L_11141452_SNP [dm3] 3L_11148352_SNP [dm6]	G	T	1.115e^-4	0.614	INTRON CG32082
X	5575305	X_5575305_SNP [dm3] X_5681272_SNP [dm6]	G	A	1.266e^-4	0.614	SYNONYMOUS_CODING Gr5a EXON CR44958	TF binding site mE1_TFBS_cad
2L	661616	2L_661616_SNP [dm3] 2L_661616_SNP [dm6]	T	C	1.310e^-4	0.614	INTRON ds	TF binding site mE1_TFBS_HSA
2R	10957937	2R_10957937_SNP [dm3] 2R_15070432_SNP [dm6]	G	A	1.310e^-4	0.614	INTERGENIC
3L	12277711	3L_12277711_SNP [dm3] 3L_12284611_SNP [dm6]	C	T	1.478e^-4	0.614	INTERGENIC
3L	18690962	3L_18690962_SNP [dm3] 3L_18697862_SNP [dm6]	G	A	1.621e^-4	0.614	SYNONYMOUS_CODING Dic4
3L	19448008	3L_19448008_SNP [dm3] 3L_19454908_SNP [dm6]	C	T	1.621e^-4	0.614	EXON CR45434	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	19449033	3L_19449033_SNP [dm3] 3L_19455933_SNP [dm6]	A	C	1.621e^-4	0.614	DOWNSTREAM CR45434 INTERGENIC
2R	17960542	2R_17960542_SNP [dm3] 2R_22073037_SNP [dm6]	A	G	1.659e^-4	0.614	SYNONYMOUS_CODING CG11474 DOWNSTREAM CG2921
2R	17006815	2R_17006815_SNP [dm3] 2R_21119310_SNP [dm6]	G	A	1.762e^-4	0.614	SYNONYMOUS_CODING CG9394 INTRON ktub	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2412883	X_2412883_SNP [dm3] X_2518850_SNP [dm6]	T	A	1.762e^-4	0.614	UPSTREAM trol INTRON trol	TF binding site mE1_TFBS_HSA
X	2412910	X_2412910_DEL [dm3] X_2518877_DEL [dm6]	CTTGACTTT	A	1.762e^-4	0.614	UPSTREAM trol INTRON trol	TF binding site mE1_TFBS_HSA
3L	14389630	3L_14389630_SNP [dm3] 3L_14396530_SNP [dm6]	T	C	1.779e^-4	0.614	INTERGENIC
3L	9826640	3L_9826640_SNP [dm3] 3L_9833540_SNP [dm6]	G	A	1.779e^-4	0.614	UTR_3_PRIME CG43897 DOWNSTREAM I-2
2R	10717893	2R_10717893_SNP [dm3] 2R_14830388_SNP [dm6]	G	A	1.900e^-4	0.614	INTERGENIC
X	12813660	X_12813660_SNP [dm3] X_12919627_SNP [dm6]	A	G	1.924e^-4	0.614	UTR_5_PRIME fne
3R	19264202	3R_19264202_SNP [dm3] 3R_23438480_SNP [dm6]	G	A	1.955e^-4	0.614	INTRON CG4374	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21390934	3R_21390934_SNP [dm3] 3R_25565212_SNP [dm6]	T	C	1.955e^-4	0.614	INTRON msi
3R	21412677	3R_21412677_SNP [dm3] 3R_25586955_SNP [dm6]	C	T	1.955e^-4	0.614	INTRON msi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	21412852	3R_21412852_SNP [dm3] 3R_25587130_SNP [dm6]	C	T	1.955e^-4	0.614	INTRON msi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	25434920	3R_25434920_DEL [dm3] 3R_29609198_DEL [dm6]	TGCTACACG	A	1.955e^-4	0.614	DOWNSTREAM Diedel2 INTRON alph
3R	5469839	3R_5469839_SNP [dm3] 3R_9644117_SNP [dm6]	G	A	1.955e^-4	0.614	DOWNSTREAM Fst INTRON Dh44	TF binding site BDTNP1_TFBS_twi
X	5607100	X_5607100_SNP [dm3] X_5713067_SNP [dm6]	A	G	1.998e^-4	0.614	INTRON CG33080
3L	18576720	3L_18576720_SNP [dm3] 3L_18583620_SNP [dm6]	G	T	2.251e^-4	0.614	EXON CR45435
3R	21412650	3R_21412650_DEL [dm3] 3R_25586928_DEL [dm6]	CCC	C	2.294e^-4	0.614	INTRON msi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	19092385	X_19092385_SNP [dm3] X_19198352_SNP [dm6]	T	C	2.412e^-4	0.614	SYNONYMOUS_CODING CG7990 UTR_3_PRIME CG7990 DOWNSTREAM CG7990	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19092677	X_19092677_SNP [dm3] X_19198644_SNP [dm6]	C	T	2.412e^-4	0.614	SYNONYMOUS_CODING CG7990 UTR_3_PRIME CG7990 DOWNSTREAM CG7990
2R	16359733	2R_16359733_SNP [dm3] 2R_20472228_SNP [dm6]	T	C	2.423e^-4	0.614	SYNONYMOUS_CODING CG12484
X	7086346	X_7086346_INS [dm3] X_7192313_INS [dm6]	T	TCTT	2.463e^-4	0.614	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb
X	21299200	X_21299200_SNP [dm3] X_21428173_SNP [dm6]	G	A	2.536e^-4	0.614	DOWNSTREAM CG10918 INTRON CG42343
2L	2559957	2L_2559957_SNP [dm3] 2L_2559957_SNP [dm6]	C	T	2.548e^-4	0.614	INTERGENIC
X	22203256	X_22203256_DEL [dm3] X_22801420_DEL [dm6]	ATA	A	2.551e^-4	0.614	INTERGENIC
2R	14661124	2R_14661124_SNP [dm3] 2R_18773619_SNP [dm6]	T	A	2.569e^-4	0.614	INTRON Mctp
2R	14714371	2R_14714371_SNP [dm3] 2R_18826866_SNP [dm6]	T	C	2.647e^-4	0.614	INTRON CG15097
3L	7739405	3L_7739405_SNP [dm3] 3L_7746305_SNP [dm6]	G	T	2.647e^-4	0.614	INTRON CG32373
3L	20161441	3L_20161441_SNP [dm3] 3L_20168341_SNP [dm6]	C	A	2.672e^-4	0.614	INTRON CG42674
3R	25783926	3R_25783926_SNP [dm3] 3R_29958204_SNP [dm6]	C	G	2.672e^-4	0.614	INTRON TkR99D
3R	6984638	3R_6984638_SNP [dm3] 3R_11158916_SNP [dm6]	G	T	2.672e^-4	0.614	SYNONYMOUS_CODING Ugt86Da
3R	6993089	3R_6993089_SNP [dm3] 3R_11167367_SNP [dm6]	A	G	2.672e^-4	0.614	SYNONYMOUS_CODING Ugt86De
2R	18246676	2R_18246676_SNP [dm3] 2R_22359171_SNP [dm6]	T	A	2.743e^-4	0.614	INTRON Liprin-gamma
3R	13815491	3R_13815491_SNP [dm3] 3R_17989769_SNP [dm6]	T	C	2.802e^-4	0.614	INTRON cpo	TF binding site mE1_TFBS_inv
2R	3526560	2R_3526560_SNP [dm3] 2R_7639055_SNP [dm6]	A	G	2.899e^-4	0.614	UPSTREAM CG43340 INTRON CG43340	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4328760	2R_4328760_SNP [dm3] 2R_8441255_SNP [dm6]	C	T	2.903e^-4	0.614	UPSTREAM Cyp4ad1 INTRON Cyp4ad1
2R	4328790	2R_4328790_SNP [dm3] 2R_8441285_SNP [dm6]	T	A	2.903e^-4	0.614	UPSTREAM Cyp4ad1 INTRON Cyp4ad1
2R	4328809	2R_4328809_SNP [dm3] 2R_8441304_SNP [dm6]	T	A	2.903e^-4	0.614	UPSTREAM Cyp4ad1 INTRON Cyp4ad1
3L	10817845	3L_10817845_INS [dm3] 3L_10824745_INS [dm6]	T	TGTAC	2.945e^-4	0.614	UPSTREAM CR45246 INTERGENIC
3L	14220777	3L_14220777_SNP [dm3] 3L_14227677_SNP [dm6]	G	A	2.973e^-4	0.614	INTRON nuf	TF binding site BDTNP1_TFBS_sna
3L	14221515	3L_14221515_SNP [dm3] 3L_14228415_SNP [dm6]	T	C	2.973e^-4	0.614	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_sna
3L	18248294	3L_18248294_SNP [dm3] 3L_18255194_SNP [dm6]	T	C	2.973e^-4	0.614	INTERGENIC
3L	18248299	3L_18248299_SNP [dm3] 3L_18255199_SNP [dm6]	G	T	2.973e^-4	0.614	INTERGENIC
3L	18248331	3L_18248331_INS [dm3] 3L_18255231_INS [dm6]	T	AA	2.973e^-4	0.614	INTERGENIC
3L	3800669	3L_3800669_SNP [dm3] 3L_3800669_SNP [dm6]	G	T	2.973e^-4	0.614	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	3800672	3L_3800672_SNP [dm3] 3L_3800672_SNP [dm6]	G	C	2.973e^-4	0.614	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7739318	3L_7739318_SNP [dm3] 3L_7746218_SNP [dm6]	C	A	2.973e^-4	0.614	INTRON CG32373
X	9978521	X_9978521_SNP [dm3] X_10084488_SNP [dm6]	A	G	3.001e^-4	0.614	SYNONYMOUS_CODING CG2972 DOWNSTREAM CG2974	TF binding site mE1_TFBS_cad
X	2412906	X_2412906_SNP [dm3] X_2518873_SNP [dm6]	C	T	3.034e^-4	0.614	UPSTREAM trol INTRON trol	TF binding site mE1_TFBS_HSA
X	21297342	X_21297342_SNP [dm3] X_21426315_SNP [dm6]	G	C	3.100e^-4	0.614	INTRON CG42343
X	21299141	X_21299141_SNP [dm3] X_21428114_SNP [dm6]	G	A	3.100e^-4	0.614	DOWNSTREAM CG10918 INTRON CG42343
X	21299159	X_21299159_SNP [dm3] X_21428132_SNP [dm6]	T	C	3.100e^-4	0.614	DOWNSTREAM CG10918 INTRON CG42343
2R	10957975	2R_10957975_SNP [dm3] 2R_15070470_SNP [dm6]	C	G	3.135e^-4	0.614	INTERGENIC
X	8671738	X_8671738_INS [dm3] X_8777705_INS [dm6]	T	TGGT	3.135e^-4	0.614	INTRON Lim1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	2888428	3L_2888428_SNP [dm3] 3L_2888428_SNP [dm6]	T	C	3.191e^-4	0.614	INTRON spz5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19447853	3L_19447853_SNP [dm3] 3L_19454753_SNP [dm6]	A	G	3.225e^-4	0.614	UPSTREAM CR45434 INTERGENIC	TF binding site mE1_TFBS_inv
2R	7542334	2R_7542334_SNP [dm3] 2R_11654829_SNP [dm6]	G	C	3.338e^-4	0.614	UPSTREAM CG13198 INTRON Roc2
3L	14757005	3L_14757005_SNP [dm3] 3L_14763905_SNP [dm6]	C	T	3.342e^-4	0.614	UTR_5_PRIME CG9384	TF binding site mE1_TFBS_cad
3L	18978979	3L_18978979_SNP [dm3] 3L_18985879_SNP [dm6]	A	T	3.349e^-4	0.614	DOWNSTREAM CG11619 & 1 other INTERGENIC
3L	19447725	3L_19447725_SNP [dm3] 3L_19454625_SNP [dm6]	G	T	3.368e^-4	0.614	UPSTREAM CR45434 INTERGENIC	TF binding site mE1_TFBS_inv
X	10775097	X_10775097_SNP [dm3] X_10881064_SNP [dm6]	T	C	3.368e^-4	0.614	INTRON Ork1
3L	3507295	3L_3507295_SNP [dm3] 3L_3507295_SNP [dm6]	C	T	3.517e^-4	0.614	INTRON CG42324	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13768719	3R_13768719_SNP [dm3] 3R_17942997_SNP [dm6]	G	A	3.527e^-4	0.614	INTRON cpo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
2L	16940033	2L_16940033_SNP [dm3] 2L_16940033_SNP [dm6]	C	G	3.606e^-4	0.614	INTERGENIC
3R	15738438	3R_15738438_SNP [dm3] 3R_19912716_SNP [dm6]	C	T	3.628e^-4	0.614	SYNONYMOUS_CODING RhoGAP92B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6996631	3R_6996631_SNP [dm3] 3R_11170909_SNP [dm6]	G	C	3.628e^-4	0.614	UTR_3_PRIME Ugt35a UPSTREAM Ugt35b
3R	6997257	3R_6997257_SNP [dm3] 3R_11171535_SNP [dm6]	C	T	3.628e^-4	0.614	SYNONYMOUS_CODING Ugt35a
3L	16543479	3L_16543479_SNP [dm3] 3L_16550379_SNP [dm6]	C	T	3.636e^-4	0.614	INTERGENIC
3L	13920332	3L_13920332_SNP [dm3] 3L_13927232_SNP [dm6]	C	T	3.724e^-4	0.614	SYNONYMOUS_CODING CG8833
2R	10717596	2R_10717596_SNP [dm3] 2R_14830091_SNP [dm6]	T	C	3.765e^-4	0.614	INTERGENIC
2R	10999516	2R_10999516_SNP [dm3] 2R_15112011_SNP [dm6]	G	A	3.765e^-4	0.614	INTERGENIC
2R	10999541	2R_10999541_SNP [dm3] 2R_15112036_SNP [dm6]	G	T	3.765e^-4	0.614	INTERGENIC
3L	13930506	3L_13930506_SNP [dm3] 3L_13937406_SNP [dm6]	A	G	3.804e^-4	0.614	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19535135	3L_19535135_SNP [dm3] 3L_19542035_SNP [dm6]	C	A	3.836e^-4	0.614	NON_SYNONYMOUS_CODING CG9279	TF binding site mE1_TFBS_cad
3L	826301	3L_826301_SNP [dm3] 3L_826301_SNP [dm6]	A	G	3.836e^-4	0.614	DOWNSTREAM CG13900 & 2 others INTERGENIC
2L	13942553	2L_13942553_SNP [dm3] 2L_13942553_SNP [dm6]	T	G	3.841e^-4	0.614	INTRON Ance-3
2R	9965059	2R_9965059_SNP [dm3] 2R_14077554_SNP [dm6]	T	C	3.873e^-4	0.614	INTRON Prosap
2L	7536368	2L_7536368_SNP [dm3] 2L_7536368_SNP [dm6]	G	T	3.874e^-4	0.614	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad
2L	7536371	2L_7536371_SNP [dm3] 2L_7536371_SNP [dm6]	T	G	3.874e^-4	0.614	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad
X	22339660	X_22339660_SNP [dm3] X_22937824_SNP [dm6]	A	G	3.907e^-4	0.614	INTERGENIC
3R	26039612	3R_26039612_SNP [dm3] 3R_30213890_SNP [dm6]	C	T	3.997e^-4	0.614	UPSTREAM CecB DOWNSTREAM Cec2 INTERGENIC
3R	26039616	3R_26039616_SNP [dm3] 3R_30213894_SNP [dm6]	C	G	3.997e^-4	0.614	UPSTREAM CecB DOWNSTREAM Cec2 INTERGENIC
X	22339599	X_22339599_SNP [dm3] X_22937763_SNP [dm6]	A	T	3.997e^-4	0.614	INTERGENIC
X	16070191	X_16070191_SNP [dm3] X_16176158_SNP [dm6]	C	T	4.099e^-4	0.614	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15489383	X_15489383_SNP [dm3] X_15595350_SNP [dm6]	T	C	4.157e^-4	0.614	INTERGENIC
2R	15681540	2R_15681540_SNP [dm3] 2R_19794035_SNP [dm6]	G	T	4.189e^-4	0.614	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	6874240	2R_6874240_SNP [dm3] 2R_10986735_SNP [dm6]	T	G	4.189e^-4	0.614	INTRON luna
3R	19083797	3R_19083797_SNP [dm3] 3R_23258075_SNP [dm6]	T	G	4.189e^-4	0.614	UTR_5_PRIME wda UPSTREAM CG13827	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26356294	3R_26356294_SNP [dm3] 3R_30530572_SNP [dm6]	A	G	4.189e^-4	0.614	UPSTREAM CR45553 INTRON CR45553 EXON CR45552
X	20504399	X_20504399_SNP [dm3] X_20633372_SNP [dm6]	A	G	4.189e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	10944982	2R_10944982_SNP [dm3] 2R_15057477_SNP [dm6]	G	A	4.230e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5368245	3L_5368245_SNP [dm3] 3L_5375145_SNP [dm6]	C	T	4.268e^-4	0.614	INTERGENIC
2R	4328782	2R_4328782_SNP [dm3] 2R_8441277_SNP [dm6]	G	A	4.282e^-4	0.614	UPSTREAM Cyp4ad1 INTRON Cyp4ad1
2R	4328783	2R_4328783_SNP [dm3] 2R_8441278_SNP [dm6]	C	A	4.282e^-4	0.614	UPSTREAM Cyp4ad1 INTRON Cyp4ad1
2L	7545539	2L_7545539_SNP [dm3] 2L_7545539_SNP [dm6]	C	T	4.296e^-4	0.614	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2R	8987295	2R_8987295_SNP [dm3] 2R_13099790_SNP [dm6]	C	T	4.318e^-4	0.614	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12013158	3L_12013158_SNP [dm3] 3L_12020058_SNP [dm6]	G	A	4.318e^-4	0.614	INTRON rols
3L	12013674	3L_12013674_SNP [dm3] 3L_12020574_SNP [dm6]	A	T	4.318e^-4	0.614	INTRON rols
3L	12013683	3L_12013683_SNP [dm3] 3L_12020583_SNP [dm6]	A	T	4.318e^-4	0.614	INTRON rols
3L	14145281	3L_14145281_DEL [dm3] 3L_14152181_DEL [dm6]	TTCGT	T	4.318e^-4	0.614	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2413022	X_2413022_SNP [dm3] X_2518989_SNP [dm6]	T	C	4.318e^-4	0.614	UPSTREAM trol INTRON trol	TF binding site mE1_TFBS_HSA
X	2413188	X_2413188_SNP [dm3] X_2519155_SNP [dm6]	T	G	4.318e^-4	0.614	INTRON trol
2R	3607811	2R_3607811_SNP [dm3] 2R_7720306_SNP [dm6]	G	T	4.367e^-4	0.614	INTRON CG18812
2R	3607849	2R_3607849_SNP [dm3] 2R_7720344_SNP [dm6]	G	A	4.367e^-4	0.614	INTRON CG18812
2R	3607919	2R_3607919_SNP [dm3] 2R_7720414_SNP [dm6]	T	C	4.367e^-4	0.614	INTRON CG18812
2R	3608226	2R_3608226_SNP [dm3] 2R_7720721_SNP [dm6]	T	C	4.367e^-4	0.614	INTRON CG18812
2L	20293878	2L_20293878_SNP [dm3] 2L_20293878_SNP [dm6]	G	A	4.378e^-4	0.614	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	6981320	3L_6981320_SNP [dm3] 3L_6988220_SNP [dm6]	G	A	4.426e^-4	0.614	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sbb
3L	6981326	3L_6981326_SNP [dm3] 3L_6988226_SNP [dm6]	A	G	4.426e^-4	0.614	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sbb
3R	18265509	3R_18265509_SNP [dm3] 3R_22439787_SNP [dm6]	A	G	4.426e^-4	0.614	DOWNSTREAM CG12499 INTERGENIC
3L	14389647	3L_14389647_INS [dm3] 3L_14396547_INS [dm6]	A	AA	4.434e^-4	0.614	INTERGENIC
3R	17748497	3R_17748497_SNP [dm3] 3R_21922775_SNP [dm6]	C	A	4.434e^-4	0.614	INTERGENIC
X	14091234	X_14091234_SNP [dm3] X_14197201_SNP [dm6]	C	T	4.442e^-4	0.614	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	6534220	X_6534220_SNP [dm3] X_6640187_SNP [dm6]	A	T	4.442e^-4	0.614	INTRON pigs
2R	16180907	2R_16180907_SNP [dm3] 2R_20293402_SNP [dm6]	C	G	4.459e^-4	0.614	UPSTREAM CR44639 DOWNSTREAM CR44638 INTERGENIC
2L	2586628	2L_2586628_SNP [dm3] 2L_2586628_SNP [dm6]	T	C	4.466e^-4	0.614	INTERGENIC
2R	16180720	2R_16180720_SNP [dm3] 2R_20293215_SNP [dm6]	C	T	4.500e^-4	0.614	UPSTREAM CR44639 DOWNSTREAM CR44638 INTERGENIC
2R	16180739	2R_16180739_SNP [dm3] 2R_20293234_SNP [dm6]	T	C	4.500e^-4	0.614	UPSTREAM CR44639 DOWNSTREAM CR44638 INTERGENIC
2R	16180752	2R_16180752_SNP [dm3] 2R_20293247_SNP [dm6]	T	C	4.500e^-4	0.614	UPSTREAM CR44639 DOWNSTREAM CR44638 INTERGENIC
3R	6993497	3R_6993497_SNP [dm3] 3R_11167775_SNP [dm6]	T	C	4.576e^-4	0.614	SYNONYMOUS_CODING Ugt86De DOWNSTREAM Ugt35b
3L	16540024	3L_16540024_SNP [dm3] 3L_16546924_SNP [dm6]	C	T	4.577e^-4	0.614	INTERGENIC
2R	4534098	2R_4534098_SNP [dm3] 2R_8646593_SNP [dm6]	T	G	4.585e^-4	0.614	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	4534184	2R_4534184_SNP [dm3] 2R_8646679_SNP [dm6]	T	C	4.585e^-4	0.614	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	10692042	2L_10692042_SNP [dm3] 2L_10692042_SNP [dm6]	A	C	4.614e^-4	0.614	DOWNSTREAM CG17108 INTERGENIC
2L	14065066	2L_14065066_SNP [dm3] 2L_14065066_SNP [dm6]	C	A	4.614e^-4	0.614	INTRON nAChRalpha5	TF binding site mE1_TFBS_sbb
2L	1748115	2L_1748115_SNP [dm3] 2L_1748115_SNP [dm6]	T	A	4.614e^-4	0.614	INTRON CG17646
2L	5620721	2L_5620721_SNP [dm3] 2L_5620721_SNP [dm6]	T	G	4.614e^-4	0.614	UTR_3_PRIME Cyp6a16 UPSTREAM CR44796 DOWNSTREAM Cyp6a16
3L	4323990	3L_4323990_SNP [dm3] 3L_4323990_SNP [dm6]	G	T	4.675e^-4	0.614	UTR_3_PRIME Cip4
2L	5131263	2L_5131263_SNP [dm3] 2L_5131263_SNP [dm6]	T	C	4.703e^-4	0.614	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9586746	2R_9586746_SNP [dm3] 2R_13699241_SNP [dm6]	C	G	4.727e^-4	0.614	INTRON fas
2R	9586754	2R_9586754_SNP [dm3] 2R_13699249_SNP [dm6]	T	C	4.727e^-4	0.614	INTRON fas
2R	6874106	2R_6874106_SNP [dm3] 2R_10986601_SNP [dm6]	G	A	4.772e^-4	0.614	INTRON luna
3L	11339320	3L_11339320_SNP [dm3] 3L_11346220_SNP [dm6]	A	G	4.772e^-4	0.614	INTERGENIC
3L	4274682	3L_4274682_SNP [dm3] 3L_4274682_SNP [dm6]	A	G	4.772e^-4	0.614	SYNONYMOUS_CODING CG1273
X	5241543	X_5241543_SNP [dm3] X_5347510_SNP [dm6]	G	A	4.772e^-4	0.614	INTRON SK
X	5241549	X_5241549_SNP [dm3] X_5347516_SNP [dm6]	G	T	4.772e^-4	0.614	INTRON SK
3L	5885641	3L_5885641_SNP [dm3] 3L_5892541_SNP [dm6]	A	T	4.795e^-4	0.614	INTERGENIC
2R	14890244	2R_14890244_SNP [dm3] 2R_19002739_SNP [dm6]	G	T	4.876e^-4	0.614	SYNONYMOUS_CODING tn INTRON tn
3L	17689588	3L_17689588_SNP [dm3] 3L_17696488_SNP [dm6]	C	T	4.876e^-4	0.614	INTRON Ccn
3L	17689740	3L_17689740_SNP [dm3] 3L_17696640_SNP [dm6]	C	T	4.876e^-4	0.614	INTRON Ccn
3L	2576449	3L_2576449_DEL [dm3] 3L_2576449_DEL [dm6]	ACTTCTTGCGAAATGAA...	A	4.876e^-4	0.614	INTRON msn
X	14683907	X_14683907_SNP [dm3] X_14789874_SNP [dm6]	G	A	4.876e^-4	0.614	SYNONYMOUS_CODING rut UTR_3_PRIME rut	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	22339780	X_22339780_SNP [dm3] X_22937944_SNP [dm6]	A	T	4.876e^-4	0.614	INTERGENIC
X	22339782	X_22339782_SNP [dm3] X_22937946_SNP [dm6]	T	A	4.876e^-4	0.614	INTERGENIC
2R	18986542	2R_18986542_SNP [dm3] 2R_23099019_SNP [dm6]	G	A	4.897e^-4	0.614	INTERGENIC
2R	9637351	2R_9637351_SNP [dm3] 2R_13749846_SNP [dm6]	T	G	4.897e^-4	0.614	DOWNSTREAM fas INTERGENIC
3R	7008175	3R_7008175_SNP [dm3] 3R_11182453_SNP [dm6]	T	G	4.897e^-4	0.614	INTERGENIC
3L	4974427	3L_4974427_SNP [dm3] 3L_4974427_SNP [dm6]	T	C	4.899e^-4	0.614	INTRON Con
3L	2577404	3L_2577404_INS [dm3] 3L_2577404_INS [dm6]	A	AGATGCA	4.911e^-4	0.614	INTRON msn	regulatory region REDfly_CRMs
X	22340094	X_22340094_SNP [dm3] X_22938258_SNP [dm6]	C	A	4.911e^-4	0.614	INTERGENIC	transposable element FlyBase
3R	6994258	3R_6994258_SNP [dm3] 3R_11168536_SNP [dm6]	T	C	4.917e^-4	0.614	UTR_3_PRIME Ugt35b UPSTREAM Ugt86De
3R	7557853	3R_7557853_SNP [dm3] 3R_11732131_SNP [dm6]	G	C	4.917e^-4	0.614	UTR_3_PRIME CG12594
3L	19449444	3L_19449444_SNP [dm3] 3L_19456344_SNP [dm6]	C	G	4.982e^-4	0.614	DOWNSTREAM CR45434 INTERGENIC
3R	19447634	3R_19447634_SNP [dm3] 3R_23621912_SNP [dm6]	G	T	4.982e^-4	0.614	INTRON CG31145
2R	10717590	2R_10717590_SNP [dm3] 2R_14830085_SNP [dm6]	A	C	5.007e^-4	0.614	INTERGENIC
3L	14389604	3L_14389604_DEL [dm3] 3L_14396504_DEL [dm6]	TATTTG	T	5.011e^-4	0.614	INTERGENIC
2L	10060972	2L_10060972_SNP [dm3] 2L_10060972_SNP [dm6]	T	C	5.029e^-4	0.614	UTR_5_PRIME Spn31A DOWNSTREAM Pen
2L	10061051	2L_10061051_SNP [dm3] 2L_10061051_SNP [dm6]	T	A	5.029e^-4	0.614	DOWNSTREAM Pen INTRON Spn31A
3L	19089727	3L_19089727_SNP [dm3] 3L_19096627_SNP [dm6]	A	G	5.080e^-4	0.614	UTR_3_PRIME CG10424 UPSTREAM CG11577	TF binding site mE1_TFBS_cad
2R	6255999	2R_6255999_SNP [dm3] 2R_10368494_SNP [dm6]	A	G	5.083e^-4	0.614	INTRON CG42732
3L	12013118	3L_12013118_SNP [dm3] 3L_12020018_SNP [dm6]	T	C	5.083e^-4	0.614	INTRON rols
3L	12013225	3L_12013225_SNP [dm3] 3L_12020125_SNP [dm6]	T	A	5.083e^-4	0.614	INTRON rols
3L	12013274	3L_12013274_SNP [dm3] 3L_12020174_SNP [dm6]	T	C	5.083e^-4	0.614	INTRON rols
3L	19089212	3L_19089212_SNP [dm3] 3L_19096112_SNP [dm6]	T	C	5.083e^-4	0.614	NON_SYNONYMOUS_CODING CG11577 DOWNSTREAM CG10424
3L	19089213	3L_19089213_SNP [dm3] 3L_19096113_SNP [dm6]	T	C	5.083e^-4	0.614	SYNONYMOUS_CODING CG11577 DOWNSTREAM CG10424
3L	19089230	3L_19089230_SNP [dm3] 3L_19096130_SNP [dm6]	T	C	5.083e^-4	0.614	NON_SYNONYMOUS_CODING CG11577 DOWNSTREAM CG10424
3L	4282586	3L_4282586_SNP [dm3] 3L_4282586_SNP [dm6]	G	A	5.083e^-4	0.614	DOWNSTREAM srw INTRON CG11583	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4282591	3L_4282591_SNP [dm3] 3L_4282591_SNP [dm6]	A	C	5.083e^-4	0.614	DOWNSTREAM srw INTRON CG11583	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4282599	3L_4282599_SNP [dm3] 3L_4282599_SNP [dm6]	A	C	5.083e^-4	0.614	DOWNSTREAM srw INTRON CG11583	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4282634	3L_4282634_SNP [dm3] 3L_4282634_SNP [dm6]	C	G	5.083e^-4	0.614	SYNONYMOUS_CODING CG11583 DOWNSTREAM srw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4282914	3L_4282914_SNP [dm3] 3L_4282914_SNP [dm6]	A	C	5.083e^-4	0.614	UPSTREAM CG11583 & 1 other DOWNSTREAM srw INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Ubx
3L	4282956	3L_4282956_SNP [dm3] 3L_4282956_SNP [dm6]	C	T	5.083e^-4	0.614	UTR_3_PRIME srw UPSTREAM CG11583 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7392844	3L_7392844_SNP [dm3] 3L_7399744_SNP [dm6]	A	G	5.083e^-4	0.614	UTR_3_PRIME CG8562 UPSTREAM CG18417
3R	6427427	3R_6427427_SNP [dm3] 3R_10601705_SNP [dm6]	G	C	5.083e^-4	0.614	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	6427523	3R_6427523_SNP [dm3] 3R_10601801_SNP [dm6]	A	G	5.083e^-4	0.614	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	9215025	2R_9215025_SNP [dm3] 2R_13327520_SNP [dm6]	C	T	5.119e^-4	0.614	INTERGENIC
3R	17747545	3R_17747545_SNP [dm3] 3R_21921823_SNP [dm6]	T	C	5.131e^-4	0.614	INTERGENIC
3R	17747584	3R_17747584_SNP [dm3] 3R_21921862_SNP [dm6]	T	G	5.131e^-4	0.614	INTERGENIC
3R	17747611	3R_17747611_SNP [dm3] 3R_21921889_SNP [dm6]	A	G	5.131e^-4	0.614	INTERGENIC
3R	17747794	3R_17747794_SNP [dm3] 3R_21922072_SNP [dm6]	G	A	5.131e^-4	0.614	INTERGENIC
X	15407331	X_15407331_SNP [dm3] X_15513298_SNP [dm6]	A	G	5.202e^-4	0.614	SYNONYMOUS_CODING Ac13E	TF binding site mE1_TFBS_sens
X	14095198	X_14095198_DEL [dm3] X_14201165_DEL [dm6]	GG	G	5.303e^-4	0.614	UPSTREAM l_1_G0007 DOWNSTREAM CG11590 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	17541204	X_17541204_SNP [dm3] X_17647171_SNP [dm6]	T	C	5.303e^-4	0.614	INTRON RhoGAPp190
X	17541281	X_17541281_SNP [dm3] X_17647248_SNP [dm6]	T	C	5.303e^-4	0.614	NON_SYNONYMOUS_CODING RhoGAPp190
2R	18539918	2R_18539918_SNP [dm3] 2R_22652413_SNP [dm6]	T	A	5.312e^-4	0.614	UTR_3_PRIME nsr DOWNSTREAM Cyp6d2 & 1 other
2R	18539927	2R_18539927_SNP [dm3] 2R_22652422_SNP [dm6]	C	A	5.312e^-4	0.614	UTR_3_PRIME nsr DOWNSTREAM Cyp6d2 & 1 other
3L	5230044	3L_5230044_SNP [dm3] 3L_5236944_SNP [dm6]	A	G	5.312e^-4	0.614	DOWNSTREAM CG4669 INTRON shep
X	4858794	X_4858794_SNP [dm3] X_4964761_SNP [dm6]	T	G	5.312e^-4	0.614	INTRON CR44833
X	17939764	X_17939764_SNP [dm3] X_18045731_SNP [dm6]	C	T	5.314e^-4	0.614	SYNONYMOUS_CODING CG15373 INTRON Sh
X	19411088	X_19411088_SNP [dm3] X_19517055_SNP [dm6]	G	C	5.323e^-4	0.614	SYNONYMOUS_CODING CG14200	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4778679	3L_4778679_SNP [dm3] 3L_4778679_SNP [dm6]	G	A	5.328e^-4	0.614	INTRON RhoGEF64C
3L	1183028	3L_1183028_SNP [dm3] 3L_1183028_SNP [dm6]	T	A	5.331e^-4	0.614	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	16070141	X_16070141_SNP [dm3] X_16176108_SNP [dm6]	G	A	5.336e^-4	0.614	INTERGENIC
3L	3351487	3L_3351487_SNP [dm3] 3L_3351487_SNP [dm6]	C	T	5.360e^-4	0.614	INTRON kst	TF binding site mE1_TFBS_cad
X	13207971	X_13207971_DEL [dm3] X_13313938_DEL [dm6]	AGTCACA	A	5.360e^-4	0.614	INTRON IP3K2
3R	14769285	3R_14769285_SNP [dm3] 3R_18943563_SNP [dm6]	A	C	5.381e^-4	0.614	INTRON CG42613
3L	2079154	3L_2079154_SNP [dm3] 3L_2079154_SNP [dm6]	T	G	5.393e^-4	0.614	INTRON sls
2R	10717219	2R_10717219_SNP [dm3] 2R_14829714_SNP [dm6]	G	T	5.431e^-4	0.614	INTERGENIC
X	4365637	X_4365637_INS [dm3] X_4471604_INS [dm6]	G	GG	5.436e^-4	0.614	INTRON bi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25783924	3R_25783924_SNP [dm3] 3R_29958202_SNP [dm6]	C	A	5.437e^-4	0.614	INTRON TkR99D
2R	2996999	2R_2996999_SNP [dm3] 2R_7109494_SNP [dm6]	G	C	5.443e^-4	0.614	INTRON esn	TF binding site mE1_TFBS_sens
2R	3578749	2R_3578749_SNP [dm3] 2R_7691244_SNP [dm6]	G	C	5.443e^-4	0.614	INTRON CG1399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25330201	3R_25330201_SNP [dm3] 3R_29504479_SNP [dm6]	C	T	5.443e^-4	0.614	UPSTREAM Trc8 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	17073062	X_17073062_SNP [dm3] X_17179029_SNP [dm6]	T	A	5.458e^-4	0.614	INTRON baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9840423	3L_9840423_SNP [dm3] 3L_9847323_SNP [dm6]	A	G	5.465e^-4	0.614	INTRON RasGAP1
2L	7478878	2L_7478878_SNP [dm3] 2L_7478878_SNP [dm6]	G	A	5.492e^-4	0.614	SYNONYMOUS_CODING Ziz	TF binding site mE1_TFBS_cad
X	9978482	X_9978482_SNP [dm3] X_10084449_SNP [dm6]	T	C	5.535e^-4	0.614	SYNONYMOUS_CODING CG2972 DOWNSTREAM CG2974	TF binding site mE1_TFBS_cad
X	9978494	X_9978494_SNP [dm3] X_10084461_SNP [dm6]	T	G	5.535e^-4	0.614	SYNONYMOUS_CODING CG2972 DOWNSTREAM CG2974	TF binding site mE1_TFBS_cad
2R	3042597	2R_3042597_SNP [dm3] 2R_7155092_SNP [dm6]	G	T	5.601e^-4	0.614	SYNONYMOUS_CODING Spn43Ad INTRON pk	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21419678	3R_21419678_INS [dm3] 3R_25593956_INS [dm6]	T	TA	5.667e^-4	0.614	UPSTREAM msi INTRON msi & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21419683	3R_21419683_SNP [dm3] 3R_25593961_SNP [dm6]	T	C	5.667e^-4	0.614	UPSTREAM msi INTRON msi & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4027268	3L_4027268_SNP [dm3] 3L_4027268_SNP [dm6]	C	T	5.673e^-4	0.614	SPLICE_SITE_REGION Gr64a INTRON Gr64a
3L	4027270	3L_4027270_SNP [dm3] 3L_4027270_SNP [dm6]	T	C	5.673e^-4	0.614	SPLICE_SITE_REGION Gr64a INTRON Gr64a
2R	12076762	2R_12076762_SNP [dm3] 2R_16189257_SNP [dm6]	C	A	5.694e^-4	0.614	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12076813	2R_12076813_SNP [dm3] 2R_16189308_SNP [dm6]	A	G	5.694e^-4	0.614	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10612887	2R_10612887_SNP [dm3] 2R_14725382_SNP [dm6]	G	A	5.710e^-4	0.614	INTERGENIC
X	2382032	X_2382032_SNP [dm3] X_2487999_SNP [dm6]	A	G	5.710e^-4	0.614	SYNONYMOUS_CODING trol	TF binding site mE1_TFBS_chinmo
2R	18553938	2R_18553938_SNP [dm3] 2R_22666433_SNP [dm6]	C	A	5.763e^-4	0.614	UPSTREAM CG30273 DOWNSTREAM CG42867 EXON CR45269 & 1 other
2R	18554358	2R_18554358_SNP [dm3] 2R_22666853_SNP [dm6]	T	C	5.763e^-4	0.614	UPSTREAM CG30273 & 1 other DOWNSTREAM CG42867 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	18554431	2R_18554431_DEL [dm3] 2R_22666926_DEL [dm6]	GGAAACAA	CCTT	5.763e^-4	0.614	UPSTREAM CG30273 & 1 other DOWNSTREAM CG42867 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	18554475	2R_18554475_SNP [dm3] 2R_22666970_SNP [dm6]	C	A	5.763e^-4	0.614	UPSTREAM CG30273 & 2 others DOWNSTREAM CG42867 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	18555550	2R_18555550_SNP [dm3] 2R_22668045_SNP [dm6]	A	C	5.763e^-4	0.614	NON_SYNONYMOUS_CODING CG30269 DOWNSTREAM CG30273	TF binding site mE1_TFBS_cad
2R	18556655	2R_18556655_SNP [dm3] 2R_22669150_SNP [dm6]	G	C	5.763e^-4	0.614	UTR_5_PRIME CG13516 UPSTREAM CG13516 DOWNSTREAM CG30269	TF binding site mE1_TFBS_chinmo
2R	18556656	2R_18556656_SNP [dm3] 2R_22669151_SNP [dm6]	C	T	5.763e^-4	0.614	UTR_5_PRIME CG13516 UPSTREAM CG13516 DOWNSTREAM CG30269	TF binding site mE1_TFBS_chinmo
2R	9599034	2R_9599034_SNP [dm3] 2R_13711529_SNP [dm6]	A	G	5.763e^-4	0.614	INTRON fas	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	17209872	3L_17209872_SNP [dm3] 3L_17216772_SNP [dm6]	C	T	5.763e^-4	0.614	INTRON Rbp6
X	13416393	X_13416393_SNP [dm3] X_13522360_SNP [dm6]	A	G	5.763e^-4	0.614	INTRON Neto
X	13416398	X_13416398_SNP [dm3] X_13522365_SNP [dm6]	T	C	5.763e^-4	0.614	INTRON Neto
X	14868129	X_14868129_SNP [dm3] X_14974096_SNP [dm6]	A	G	5.763e^-4	0.614	INTRON eag
X	15407340	X_15407340_SNP [dm3] X_15513307_SNP [dm6]	G	A	5.763e^-4	0.614	SYNONYMOUS_CODING Ac13E	TF binding site mE1_TFBS_sens
X	16940544	X_16940544_SNP [dm3] X_17046511_SNP [dm6]	C	A	5.763e^-4	0.614	INTRON CG45002
X	19301874	X_19301874_SNP [dm3] X_19407841_SNP [dm6]	C	T	5.763e^-4	0.614	INTRON kek5
X	4858910	X_4858910_SNP [dm3] X_4964877_SNP [dm6]	T	C	5.763e^-4	0.614	INTRON CR44833
X	4858926	X_4858926_SNP [dm3] X_4964893_SNP [dm6]	C	T	5.763e^-4	0.614	INTRON CR44833
X	4858929	X_4858929_SNP [dm3] X_4964896_SNP [dm6]	T	A	5.763e^-4	0.614	INTRON CR44833
X	5607196	X_5607196_SNP [dm3] X_5713163_SNP [dm6]	T	C	5.763e^-4	0.614	INTRON CG33080
2R	14328459	2R_14328459_INS [dm3] 2R_18440954_INS [dm6]	G	GG	5.776e^-4	0.614	UPSTREAM slim & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	16420506	2R_16420506_SNP [dm3] 2R_20533001_SNP [dm6]	C	G	5.776e^-4	0.614	UPSTREAM CG30154 DOWNSTREAM CR44651 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	16431346	X_16431346_SNP [dm3] X_16537313_SNP [dm6]	T	A	5.776e^-4	0.614	INTERGENIC
2R	14721307	2R_14721307_SNP [dm3] 2R_18833802_SNP [dm6]	G	A	5.819e^-4	0.614	DOWNSTREAM CG15082 INTRON CG15098
2R	14723414	2R_14723414_SNP [dm3] 2R_18835909_SNP [dm6]	A	T	5.819e^-4	0.614	DOWNSTREAM CG15099 INTRON CG15083
2R	14723423	2R_14723423_SNP [dm3] 2R_18835918_SNP [dm6]	A	T	5.819e^-4	0.614	DOWNSTREAM CG15099 INTRON CG15083
3L	10922795	3L_10922795_SNP [dm3] 3L_10929695_SNP [dm6]	C	T	5.867e^-4	0.614	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9413678	2L_9413678_SNP [dm3] 2L_9413678_SNP [dm6]	A	T	5.930e^-4	0.614	INTRON Shawl
2R	3006922	2R_3006922_SNP [dm3] 2R_7119417_SNP [dm6]	G	T	5.949e^-4	0.614	INTRON esn
2R	4956040	2R_4956040_SNP [dm3] 2R_9068535_SNP [dm6]	G	T	5.949e^-4	0.614	UPSTREAM ana INTRON ana
3R	24646002	3R_24646002_SNP [dm3] 3R_28820280_SNP [dm6]	T	C	5.957e^-4	0.614	UTR_5_PRIME CG1647 UPSTREAM CG1523	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3R	24646018	3R_24646018_SNP [dm3] 3R_28820296_SNP [dm6]	G	T	5.957e^-4	0.614	START_GAINED CG1647 UTR_5_PRIME CG1647 UPSTREAM CG1523	TF binding site mE1_TFBS_ttk
3R	24646022	3R_24646022_SNP [dm3] 3R_28820300_SNP [dm6]	A	T	5.957e^-4	0.614	UTR_5_PRIME CG1647 UPSTREAM CG1523	TF binding site mE1_TFBS_ttk
3R	24646023	3R_24646023_SNP [dm3] 3R_28820301_SNP [dm6]	T	G	5.957e^-4	0.614	UTR_5_PRIME CG1647 UPSTREAM CG1523	TF binding site mE1_TFBS_ttk
3R	24646262	3R_24646262_SNP [dm3] 3R_28820540_SNP [dm6]	T	G	5.957e^-4	0.614	UPSTREAM CG1523 INTRON CG1647	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3R	25433275	3R_25433275_SNP [dm3] 3R_29607553_SNP [dm6]	G	C	5.957e^-4	0.614	UPSTREAM Diedel2 INTRON alph
2L	8265427	2L_8265427_DEL [dm3] 2L_8265427_DEL [dm6]	TG	C	5.973e^-4	0.614	UTR_5_PRIME Btk29A INTRON Btk29A
3L	10816650	3L_10816650_SNP [dm3] 3L_10823550_SNP [dm6]	G	A	6.030e^-4	0.614	INTERGENIC
3R	10365957	3R_10365957_SNP [dm3] 3R_14540235_SNP [dm6]	C	G	6.042e^-4	0.614	INTRON Pde6
X	22157730	X_22157730_SNP [dm3] X_22755894_SNP [dm6]	C	T	6.088e^-4	0.614	INTRON CR44997	transposable element FlyBase
2L	16675303	2L_16675303_SNP [dm3] 2L_16675303_SNP [dm6]	A	T	6.144e^-4	0.614	INTRON Trpgamma
3L	15164899	3L_15164899_SNP [dm3] 3L_15171799_SNP [dm6]	A	G	6.198e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	7007647	3R_7007647_SNP [dm3] 3R_11181925_SNP [dm6]	C	G	6.226e^-4	0.614	INTERGENIC
3R	19263765	3R_19263765_SNP [dm3] 3R_23438043_SNP [dm6]	G	C	6.243e^-4	0.614	INTRON CG4374
3R	19264174	3R_19264174_SNP [dm3] 3R_23438452_SNP [dm6]	G	T	6.243e^-4	0.614	INTRON CG4374
3R	22221342	3R_22221342_SNP [dm3] 3R_26395620_SNP [dm6]	C	T	6.252e^-4	0.614	INTERGENIC
2R	14143959	2R_14143959_SNP [dm3] 2R_18256454_SNP [dm6]	G	A	6.259e^-4	0.614	UPSTREAM CR44421 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14143985	2R_14143985_SNP [dm3] 2R_18256480_SNP [dm6]	G	A	6.259e^-4	0.614	UPSTREAM CR44421 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3279291	3L_3279291_SNP [dm3] 3L_3279291_SNP [dm6]	T	A	6.283e^-4	0.614	UPSTREAM CG12017 INTERGENIC
3L	3279296	3L_3279296_SNP [dm3] 3L_3279296_SNP [dm6]	G	A	6.283e^-4	0.614	UPSTREAM CG12017 INTERGENIC
3L	6813652	3L_6813652_SNP [dm3] 3L_6820552_SNP [dm6]	T	A	6.283e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16542308	3L_16542308_INS [dm3] 3L_16549208_INS [dm6]	C	TCATT	6.340e^-4	0.614	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18438446	2R_18438446_SNP [dm3] 2R_22550941_SNP [dm6]	A	T	6.343e^-4	0.614	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16599740	2L_16599740_SNP [dm3] 2L_16599740_SNP [dm6]	T	A	6.384e^-4	0.614	INTRON CG42389
2L	16599744	2L_16599744_SNP [dm3] 2L_16599744_SNP [dm6]	T	G	6.384e^-4	0.614	INTRON CG42389
2L	16599747	2L_16599747_SNP [dm3] 2L_16599747_SNP [dm6]	T	G	6.384e^-4	0.614	INTRON CG42389
2R	11203683	2R_11203683_SNP [dm3] 2R_15316178_SNP [dm6]	A	C	6.392e^-4	0.614	NON_SYNONYMOUS_CODING mus210
2R	13197120	2R_13197120_SNP [dm3] 2R_17309615_SNP [dm6]	T	A	6.392e^-4	0.614	INTRON mbl
2R	13197126	2R_13197126_SNP [dm3] 2R_17309621_SNP [dm6]	T	C	6.392e^-4	0.614	INTRON mbl
2R	13197127	2R_13197127_SNP [dm3] 2R_17309622_SNP [dm6]	A	T	6.392e^-4	0.614	INTRON mbl
2R	13197185	2R_13197185_SNP [dm3] 2R_17309680_SNP [dm6]	A	T	6.392e^-4	0.614	INTRON mbl
2R	13197416	2R_13197416_SNP [dm3] 2R_17309911_SNP [dm6]	C	G	6.392e^-4	0.614	INTRON mbl
2R	17744899	2R_17744899_SNP [dm3] 2R_21857394_SNP [dm6]	C	T	6.392e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2R	7924279	2R_7924279_SNP [dm3] 2R_12036774_SNP [dm6]	C	T	6.392e^-4	0.614	SYNONYMOUS_CODING CG43191 UPSTREAM 128up DOWNSTREAM CG8321	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	5974543	3L_5974543_SNP [dm3] 3L_5981443_SNP [dm6]	A	G	6.392e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	5974580	3L_5974580_SNP [dm3] 3L_5981480_SNP [dm6]	A	T	6.392e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	6997300	3R_6997300_SNP [dm3] 3R_11171578_SNP [dm6]	G	A	6.392e^-4	0.614	NON_SYNONYMOUS_CODING Ugt35a
X	5478457	X_5478457_SNP [dm3] X_5584424_SNP [dm6]	T	C	6.392e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	14810527	3R_14810527_SNP [dm3] 3R_18984805_SNP [dm6]	G	C	6.398e^-4	0.614	SYNONYMOUS_CODING gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	6231810	X_6231810_SNP [dm3] X_6337777_SNP [dm6]	T	A	6.399e^-4	0.614	UTR_5_PRIME CG3842
2R	18553441	2R_18553441_SNP [dm3] 2R_22665936_SNP [dm6]	A	T	6.407e^-4	0.614	NON_SYNONYMOUS_CODING CG42867 UPSTREAM CR42868 DOWNSTREAM CR45269
2R	19829729	2R_19829729_SNP [dm3] 2R_23942206_SNP [dm6]	G	A	6.407e^-4	0.614	UPSTREAM Galphas DOWNSTREAM Tal INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	19829763	2R_19829763_SNP [dm3] 2R_23942240_SNP [dm6]	A	T	6.407e^-4	0.614	UPSTREAM Galphas DOWNSTREAM Tal INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20559218	3R_20559218_SNP [dm3] 3R_24733496_SNP [dm6]	T	G	6.407e^-4	0.614	INTRON tok
2L	12619433	2L_12619433_SNP [dm3] 2L_12619433_SNP [dm6]	C	T	6.454e^-4	0.614	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	4021169	X_4021169_SNP [dm3] X_4127136_SNP [dm6]	G	C	6.516e^-4	0.614	UTR_3_PRIME tyf DOWNSTREAM tyf
X	17932948	X_17932948_SNP [dm3] X_18038915_SNP [dm6]	C	T	6.526e^-4	0.614	INTRON Sh
X	17932956	X_17932956_SNP [dm3] X_18038923_SNP [dm6]	T	G	6.526e^-4	0.614	INTRON Sh
2L	16555553	2L_16555553_SNP [dm3] 2L_16555553_SNP [dm6]	A	G	6.546e^-4	0.614	INTRON CG42389
3L	7162672	3L_7162672_SNP [dm3] 3L_7169572_SNP [dm6]	T	C	6.560e^-4	0.614	INTRON Dscam2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16782234	X_16782234_SNP [dm3] X_16888201_SNP [dm6]	T	A	6.611e^-4	0.614	NON_SYNONYMOUS_CODING CG4880 DOWNSTREAM CR43768
X	8640974	X_8640974_SNP [dm3] X_8746941_SNP [dm6]	A	T	6.615e^-4	0.614	INTERGENIC
2L	7556384	2L_7556384_SNP [dm3] 2L_7556384_SNP [dm6]	C	T	6.643e^-4	0.614	INTRON RapGAP1
3L	4282561	3L_4282561_SNP [dm3] 3L_4282561_SNP [dm6]	T	C	6.644e^-4	0.614	DOWNSTREAM CG1311 & 1 other INTRON CG11583	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13998329	2L_13998329_SNP [dm3] 2L_13998329_SNP [dm6]	T	C	6.691e^-4	0.614	INTRON rk
2L	9820757	2L_9820757_INS [dm3] 2L_9820757_INS [dm6]	T	TTTGGAT	6.729e^-4	0.614	INTRON nAChRalpha6
2L	674784	2L_674784_SNP [dm3] 2L_674784_SNP [dm6]	T	A	6.762e^-4	0.614	INTRON ds
2R	12385453	2R_12385453_SNP [dm3] 2R_16497948_SNP [dm6]	C	G	6.762e^-4	0.614	NON_SYNONYMOUS_CODING CG7813
2R	13671870	2R_13671870_SNP [dm3] 2R_17784365_SNP [dm6]	C	T	6.762e^-4	0.614	UPSTREAM mir-31a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	7528403	2R_7528403_SNP [dm3] 2R_11640898_SNP [dm6]	C	G	6.762e^-4	0.614	UTR_5_PRIME CG9005 DOWNSTREAM CG9003	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	7540681	2R_7540681_SNP [dm3] 2R_11653176_SNP [dm6]	C	T	6.762e^-4	0.614	UPSTREAM tRNA:CR30254 DOWNSTREAM CG34228 & 1 other INTRON Roc2	TF binding site mE1_TFBS_cad
X	15285687	X_15285687_SNP [dm3] X_15391654_SNP [dm6]	G	T	6.762e^-4	0.614	INTRON Cngl
X	15286206	X_15286206_SNP [dm3] X_15392173_SNP [dm6]	C	T	6.762e^-4	0.614	INTRON Cngl
2R	14328337	2R_14328337_SNP [dm3] 2R_18440832_SNP [dm6]	A	G	6.775e^-4	0.614	UPSTREAM slim & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	2340862	X_2340862_SNP [dm3] X_2446829_SNP [dm6]	G	A	6.781e^-4	0.614	SPLICE_SITE_REGION boi UPSTREAM z INTRON boi	TF binding site mE1_TFBS_sens
2R	5338508	2R_5338508_SNP [dm3] 2R_9451003_SNP [dm6]	G	T	6.786e^-4	0.614	INTRON Camta
2R	5338509	2R_5338509_SNP [dm3] 2R_9451004_SNP [dm6]	G	T	6.786e^-4	0.614	INTRON Camta
2R	5338511	2R_5338511_INS [dm3] 2R_9451006_INS [dm6]	A	AA	6.786e^-4	0.614	INTRON Camta
2R	5338514	2R_5338514_SNP [dm3] 2R_9451009_SNP [dm6]	T	G	6.786e^-4	0.614	INTRON Camta
2R	5338519	2R_5338519_INS [dm3] 2R_9451014_INS [dm6]	A	AATCATATATTCT...	6.786e^-4	0.614	INTRON Camta
2R	5338539	2R_5338539_DEL [dm3] 2R_9451034_DEL [dm6]	AGTATGCCTAATC...	A	6.786e^-4	0.614	INTRON Camta
2R	5338557	2R_5338557_SNP [dm3] 2R_9451052_SNP [dm6]	T	G	6.786e^-4	0.614	INTRON Camta
2R	5338560	2R_5338560_SNP [dm3] 2R_9451055_SNP [dm6]	T	A	6.786e^-4	0.614	INTRON Camta
2R	5338567	2R_5338567_SNP [dm3] 2R_9451062_SNP [dm6]	A	G	6.786e^-4	0.614	INTRON Camta
3L	16744302	3L_16744302_SNP [dm3] 3L_16751202_SNP [dm6]	A	T	6.790e^-4	0.614	INTERGENIC
3R	25224106	3R_25224106_SNP [dm3] 3R_29398384_SNP [dm6]	T	C	6.819e^-4	0.614	INTRON Ptp99A
3R	17747577	3R_17747577_SNP [dm3] 3R_21921855_SNP [dm6]	G	A	6.882e^-4	0.614	INTERGENIC
3R	17747579	3R_17747579_SNP [dm3] 3R_21921857_SNP [dm6]	A	G	6.882e^-4	0.614	INTERGENIC
3R	17747685	3R_17747685_DEL [dm3] 3R_21921963_DEL [dm6]	TCTAAACTATTATCT...	C	6.882e^-4	0.614	INTERGENIC
3R	17747756	3R_17747756_DEL [dm3] 3R_21922034_DEL [dm6]	GT	G	6.882e^-4	0.614	INTERGENIC
3R	17747809	3R_17747809_SNP [dm3] 3R_21922087_SNP [dm6]	C	T	6.882e^-4	0.614	INTERGENIC
3R	27116581	3R_27116581_SNP [dm3] 3R_31290859_SNP [dm6]	C	T	6.955e^-4	0.614	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11215900	2R_11215900_SNP [dm3] 2R_15328395_SNP [dm6]	G	C	6.974e^-4	0.614	UPSTREAM CG8160 INTERGENIC
2R	11218992	2R_11218992_SNP [dm3] 2R_15331487_SNP [dm6]	C	A	6.974e^-4	0.614	UTR_5_PRIME Hr51 UPSTREAM CR44371	TF binding site BDTNP1_TFBS_dl
2R	15796372	2R_15796372_SNP [dm3] 2R_19908867_SNP [dm6]	C	T	6.974e^-4	0.614	DOWNSTREAM CR44573 INTERGENIC
X	11750290	X_11750290_SNP [dm3] X_11856257_SNP [dm6]	C	T	6.974e^-4	0.614	SYNONYMOUS_CODING ATP7	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
3L	8923463	3L_8923463_SNP [dm3] 3L_8930363_SNP [dm6]	T	A	6.986e^-4	0.614	INTRON Tsp66E
2L	1964900	2L_1964900_SNP [dm3] 2L_1964900_SNP [dm6]	G	A	6.992e^-4	0.614	UPSTREAM tRNA:CR31942 INTRON erm	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6235808	2L_6235808_DEL [dm3] 2L_6235808_DEL [dm6]	AACTGAAAAA	G	6.992e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
2L	9554314	2L_9554314_SNP [dm3] 2L_9554314_SNP [dm6]	G	C	6.992e^-4	0.614	INTRON jp	TF binding site mE1_TFBS_cad
2R	4928780	2R_4928780_SNP [dm3] 2R_9041275_SNP [dm6]	C	A	6.992e^-4	0.614	SYNONYMOUS_CODING Ance-4 DOWNSTREAM PPO2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15691079	3L_15691079_SNP [dm3] 3L_15697979_SNP [dm6]	C	T	6.992e^-4	0.614	SYNONYMOUS_CODING comm2
3L	15897786	3L_15897786_SNP [dm3] 3L_15904686_SNP [dm6]	C	T	6.992e^-4	0.614	INTRON sff
X	15181104	X_15181104_SNP [dm3] X_15287071_SNP [dm6]	C	T	6.992e^-4	0.614	INTERGENIC
2R	13977242	2R_13977242_SNP [dm3] 2R_18089737_SNP [dm6]	T	C	7.009e^-4	0.614	INTRON CG34386
2L	16700847	2L_16700847_SNP [dm3] 2L_16700847_SNP [dm6]	C	G	7.011e^-4	0.614	UPSTREAM CR43669 DOWNSTREAM grp & 1 other INTERGENIC
X	19445052	X_19445052_SNP [dm3] X_19551019_SNP [dm6]	C	T	7.011e^-4	0.614	UPSTREAM mir-972 & 2 others INTERGENIC
3R	21412899	3R_21412899_SNP [dm3] 3R_25587177_SNP [dm6]	G	A	7.032e^-4	0.614	INTRON msi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	16767915	2L_16767915_SNP [dm3] 2L_16767915_SNP [dm6]	C	T	7.047e^-4	0.614	UTR_5_PRIME Mhc UPSTREAM Mhc INTRON Mhc	regulatory region REDfly_CRMs
2R	12667091	2R_12667091_SNP [dm3] 2R_16779586_SNP [dm6]	C	T	7.047e^-4	0.614	UPSTREAM resilin DOWNSTREAM Vkor INTERGENIC	TF binding site mE1_TFBS_cad
3L	7739130	3L_7739130_SNP [dm3] 3L_7746030_SNP [dm6]	G	A	7.049e^-4	0.614	INTRON CG32373
X	12516998	X_12516998_SNP [dm3] X_12622965_SNP [dm6]	T	G	7.084e^-4	0.614	DOWNSTREAM CR44568 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14498536	3L_14498536_SNP [dm3] 3L_14505436_SNP [dm6]	A	G	7.106e^-4	0.614	INTRON bbg
3R	14313528	3R_14313528_SNP [dm3] 3R_18487806_SNP [dm6]	A	G	7.150e^-4	0.614	INTRON fru
2L	10047553	2L_10047553_SNP [dm3] 2L_10047553_SNP [dm6]	A	G	7.154e^-4	0.614	INTERGENIC
2R	13198940	2R_13198940_SNP [dm3] 2R_17311435_SNP [dm6]	C	T	7.179e^-4	0.614	INTRON mbl
3R	7007775	3R_7007775_SNP [dm3] 3R_11182053_SNP [dm6]	C	T	7.179e^-4	0.614	INTERGENIC
2L	16700783	2L_16700783_INS [dm3] 2L_16700783_INS [dm6]	G	GAT	7.228e^-4	0.614	DOWNSTREAM grp & 1 other EXON CR43669
2L	7162202	2L_7162202_SNP [dm3] 2L_7162202_SNP [dm6]	A	G	7.228e^-4	0.614	INTERGENIC
3L	18257089	3L_18257089_SNP [dm3] 3L_18263989_SNP [dm6]	G	T	7.240e^-4	0.614	INTERGENIC
2R	14749477	2R_14749477_SNP [dm3] 2R_18861972_SNP [dm6]	T	G	7.245e^-4	0.614	UTR_5_PRIME Jheh3 UPSTREAM CG43069
3L	19575570	3L_19575570_SNP [dm3] 3L_19582470_SNP [dm6]	C	T	7.267e^-4	0.614	INTRON Shal
3L	10282833	3L_10282833_SNP [dm3] 3L_10289733_SNP [dm6]	C	G	7.313e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18188563	2R_18188563_SNP [dm3] 2R_22301058_SNP [dm6]	C	A	7.374e^-4	0.614	INTRON wdp	TF binding site mE1_TFBS_cad
3L	14221489	3L_14221489_SNP [dm3] 3L_14228389_SNP [dm6]	G	A	7.374e^-4	0.614	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_sna
3L	3546501	3L_3546501_SNP [dm3] 3L_3546501_SNP [dm6]	G	A	7.374e^-4	0.614	INTRON Eip63E
3R	16570205	3R_16570205_SNP [dm3] 3R_20744483_SNP [dm6]	C	G	7.374e^-4	0.614	SYNONYMOUS_CODING CG31200 UPSTREAM CG31199 INTRON CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16570211	3R_16570211_SNP [dm3] 3R_20744489_SNP [dm6]	T	G	7.374e^-4	0.614	SYNONYMOUS_CODING CG31200 UPSTREAM CG31199 INTRON CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7222528	3L_7222528_SNP [dm3] 3L_7229428_SNP [dm6]	T	C	7.394e^-4	0.614	INTERGENIC
3R	21412641	3R_21412641_SNP [dm3] 3R_25586919_SNP [dm6]	C	T	7.394e^-4	0.614	INTRON msi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	2506650	3R_2506650_SNP [dm3] 3R_6680928_SNP [dm6]	A	C	7.394e^-4	0.614	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	25435438	3R_25435438_SNP [dm3] 3R_29609716_SNP [dm6]	G	A	7.394e^-4	0.614	DOWNSTREAM Diedel2 INTRON alph	TF binding site mE1_TFBS_chinmo
3R	23775114	3R_23775114_SNP [dm3] 3R_27949392_SNP [dm6]	T	C	7.427e^-4	0.614	SYNONYMOUS_CODING Gp93	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23979989	3R_23979989_SNP [dm3] 3R_28154267_SNP [dm6]	A	C	7.427e^-4	0.614	INTRON CG34354	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	23991038	3R_23991038_SNP [dm3] 3R_28165316_SNP [dm6]	C	T	7.427e^-4	0.614	INTRON CG34354
2R	17921771	2R_17921771_SNP [dm3] 2R_22034266_SNP [dm6]	A	C	7.454e^-4	0.614	UPSTREAM CG9308 INTRON CG34370
2R	11181305	2R_11181305_SNP [dm3] 2R_15293800_SNP [dm6]	C	T	7.457e^-4	0.614	DOWNSTREAM CR44241 INTRON Trpm
2R	17176531	2R_17176531_SNP [dm3] 2R_21289026_SNP [dm6]	G	C	7.470e^-4	0.614	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
3R	16814900	3R_16814900_SNP [dm3] 3R_20989178_SNP [dm6]	T	C	7.470e^-4	0.614	UPSTREAM Calx INTRON Calx
X	15503961	X_15503961_SNP [dm3] X_15609928_SNP [dm6]	G	A	7.470e^-4	0.614	INTRON sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12635803	3L_12635803_SNP [dm3] 3L_12642703_SNP [dm6]	C	G	7.581e^-4	0.614	INTRON CR32111 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19452207	X_19452207_SNP [dm3] X_19558174_SNP [dm6]	C	T	7.612e^-4	0.614	UPSTREAM mir-4966 & 3 others INTERGENIC
2R	13195978	2R_13195978_SNP [dm3] 2R_17308473_SNP [dm6]	A	G	7.616e^-4	0.614	INTRON mbl
2R	13196003	2R_13196003_SNP [dm3] 2R_17308498_SNP [dm6]	A	T	7.616e^-4	0.614	INTRON mbl
2R	13196256	2R_13196256_SNP [dm3] 2R_17308751_SNP [dm6]	A	T	7.616e^-4	0.614	INTRON mbl
2R	13977187	2R_13977187_SNP [dm3] 2R_18089682_SNP [dm6]	A	C	7.616e^-4	0.614	INTRON CG34386
2L	14731333	2L_14731333_SNP [dm3] 2L_14731333_SNP [dm6]	G	C	7.627e^-4	0.614	INTERGENIC
2L	5024317	2L_5024317_SNP [dm3] 2L_5024317_SNP [dm6]	C	G	7.683e^-4	0.614	INTRON vkg	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	5024319	2L_5024319_SNP [dm3] 2L_5024319_SNP [dm6]	G	A	7.683e^-4	0.614	INTRON vkg	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	2082667	3L_2082667_SNP [dm3] 3L_2082667_SNP [dm6]	T	G	7.724e^-4	0.614	NON_SYNONYMOUS_CODING sls INTRON sls
3R	24253417	3R_24253417_SNP [dm3] 3R_28427695_SNP [dm6]	T	A	7.724e^-4	0.614	INTRON beat-VI
3L	1661673	3L_1661673_SNP [dm3] 3L_1661673_SNP [dm6]	T	C	7.742e^-4	0.614	INTRON CG7971	TF binding site mE1_TFBS_chinmo
3L	19574740	3L_19574740_SNP [dm3] 3L_19581640_SNP [dm6]	A	C	7.742e^-4	0.614	INTRON Shal
X	17943503	X_17943503_SNP [dm3] X_18049470_SNP [dm6]	T	A	7.755e^-4	0.614	DOWNSTREAM CG15373 INTRON Sh
3R	14642078	3R_14642078_SNP [dm3] 3R_18816356_SNP [dm6]	C	A	7.819e^-4	0.614	INTRON CG18208
3L	16539277	3L_16539277_SNP [dm3] 3L_16546177_SNP [dm6]	T	C	7.836e^-4	0.614	UPSTREAM CG13033 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	16539279	3L_16539279_SNP [dm3] 3L_16546179_SNP [dm6]	T	C	7.836e^-4	0.614	UPSTREAM CG13033 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	19616449	2R_19616449_SNP [dm3] 2R_23728926_SNP [dm6]	G	T	7.838e^-4	0.614	INTRON Sesn
X	17076891	X_17076891_SNP [dm3] X_17182858_SNP [dm6]	A	G	7.838e^-4	0.614	DOWNSTREAM CR44026 INTRON baz
3L	17716176	3L_17716176_SNP [dm3] 3L_17723076_SNP [dm6]	T	G	7.865e^-4	0.614	DOWNSTREAM CG6052 INTRON Ccn
3R	19715168	3R_19715168_SNP [dm3] 3R_23889446_SNP [dm6]	T	C	7.897e^-4	0.614	DOWNSTREAM TfIIA-S INTRON Pli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	11344725	X_11344725_SNP [dm3] X_11450692_SNP [dm6]	A	G	7.936e^-4	0.614	INTRON Evi5	TF binding site mE1_TFBS_HSA
2L	10405444	2L_10405444_SNP [dm3] 2L_10405444_SNP [dm6]	T	C	7.939e^-4	0.614	UPSTREAM Ir31a & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	2969124	2R_2969124_SNP [dm3] 2R_7081619_SNP [dm6]	A	G	7.961e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5078051	3L_5078051_SNP [dm3] 3L_5078051_SNP [dm6]	A	T	7.974e^-4	0.614	INTRON Con
3R	26039508	3R_26039508_SNP [dm3] 3R_30213786_SNP [dm6]	G	T	8.002e^-4	0.614	UTR_5_PRIME CecB DOWNSTREAM Cec2
2R	14328968	2R_14328968_SNP [dm3] 2R_18441463_SNP [dm6]	T	G	8.009e^-4	0.614	UTR_5_PRIME slim UPSTREAM CG30118	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19836537	2R_19836537_SNP [dm3] 2R_23949014_SNP [dm6]	G	C	8.009e^-4	0.614	UTR_5_PRIME CG13565 UPSTREAM CG2970 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11341972	2L_11341972_SNP [dm3] 2L_11341972_SNP [dm6]	A	C	8.053e^-4	0.614	DOWNSTREAM CG14926 INTERGENIC
2L	1862534	2L_1862534_SNP [dm3] 2L_1862534_SNP [dm6]	T	C	8.085e^-4	0.614	INTRON CG31663
2R	17744904	2R_17744904_DEL [dm3] 2R_21857399_DEL [dm6]	TCATGCCAAACTGATACCTT...	T	8.111e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	17745079	2R_17745079_SNP [dm3] 2R_21857574_SNP [dm6]	C	A	8.111e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2R	6874248	2R_6874248_SNP [dm3] 2R_10986743_SNP [dm6]	A	G	8.128e^-4	0.614	INTRON luna
X	19445053	X_19445053_SNP [dm3] X_19551020_SNP [dm6]	C	G	8.254e^-4	0.614	UPSTREAM mir-972 & 2 others INTERGENIC
2R	9965089	2R_9965089_SNP [dm3] 2R_14077584_SNP [dm6]	T	C	8.268e^-4	0.614	INTRON Prosap
2R	14722883	2R_14722883_SNP [dm3] 2R_18835378_SNP [dm6]	C	A	8.281e^-4	0.614	UTR_5_PRIME CG15083 UPSTREAM CG15098
3R	20336340	3R_20336340_SNP [dm3] 3R_24510618_SNP [dm6]	T	A	8.281e^-4	0.614	INTRON nAChRbeta2
X	14321920	X_14321920_SNP [dm3] X_14427887_SNP [dm6]	C	T	8.284e^-4	0.614	INTRON dpr8
X	18020891	X_18020891_DEL [dm3] X_18126858_DEL [dm6]	TATTGTGGTCCTGGAAAACC...	A	8.284e^-4	0.614	UTR_5_PRIME CG32553
X	6394289	X_6394289_SNP [dm3] X_6500256_SNP [dm6]	T	A	8.284e^-4	0.614	INTRON CG42340
X	6534352	X_6534352_SNP [dm3] X_6640319_SNP [dm6]	C	G	8.284e^-4	0.614	INTRON pigs
X	6535088	X_6535088_DEL [dm3] X_6641055_DEL [dm6]	ACAA	A	8.284e^-4	0.614	INTRON pigs
3R	2503978	3R_2503978_SNP [dm3] 3R_6678256_SNP [dm6]	A	C	8.295e^-4	0.614	NON_SYNONYMOUS_CODING lab	regulatory region FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9874866	3L_9874866_DEL [dm3] 3L_9881766_DEL [dm6]	TATAATT	T	8.307e^-4	0.614	INTRON CG34382
3L	9874879	3L_9874879_SNP [dm3] 3L_9881779_SNP [dm6]	C	T	8.307e^-4	0.614	INTRON CG34382
3L	18254230	3L_18254230_SNP [dm3] 3L_18261130_SNP [dm6]	G	T	8.311e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	11838813	2R_11838813_SNP [dm3] 2R_15951308_SNP [dm6]	G	T	8.316e^-4	0.614	SYNONYMOUS_CODING Strn-Mlck UPSTREAM Strn-Mlck DOWNSTREAM Strn-Mlck
X	10464317	X_10464317_SNP [dm3] X_10570284_SNP [dm6]	A	T	8.316e^-4	0.614	INTRON spri
X	10464318	X_10464318_SNP [dm3] X_10570285_SNP [dm6]	A	G	8.316e^-4	0.614	INTRON spri
X	10464371	X_10464371_SNP [dm3] X_10570338_SNP [dm6]	T	C	8.316e^-4	0.614	INTRON spri	TF binding site mE1_TFBS_chinmo
X	10464413	X_10464413_SNP [dm3] X_10570380_SNP [dm6]	G	C	8.316e^-4	0.614	INTRON spri	TF binding site mE1_TFBS_chinmo
X	10464427	X_10464427_DEL [dm3] X_10570394_DEL [dm6]	AA	A	8.316e^-4	0.614	INTRON spri	TF binding site mE1_TFBS_chinmo
X	10464436	X_10464436_SNP [dm3] X_10570403_SNP [dm6]	T	C	8.316e^-4	0.614	INTRON spri	TF binding site mE1_TFBS_chinmo
X	10464447	X_10464447_SNP [dm3] X_10570414_SNP [dm6]	T	C	8.316e^-4	0.614	INTRON spri	TF binding site mE1_TFBS_chinmo
X	12752213	X_12752213_SNP [dm3] X_12858180_SNP [dm6]	A	G	8.316e^-4	0.614	UPSTREAM CG4661 INTRON Pde9
X	12752214	X_12752214_INS [dm3] X_12858181_INS [dm6]	A	AAATCTC	8.316e^-4	0.614	UPSTREAM CG4661 INTRON Pde9
X	12752216	X_12752216_INS [dm3] X_12858183_INS [dm6]	G	GAATAAACAATTCT...	8.316e^-4	0.614	UPSTREAM CG4661 INTRON Pde9
3L	16539767	3L_16539767_SNP [dm3] 3L_16546667_SNP [dm6]	A	T	8.359e^-4	0.614	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	27007240	3R_27007240_SNP [dm3] 3R_31181518_SNP [dm6]	A	G	8.364e^-4	0.614	SYNONYMOUS_CODING mesh
3R	10341687	3R_10341687_SNP [dm3] 3R_14515965_SNP [dm6]	G	T	8.417e^-4	0.614	NON_SYNONYMOUS_CODING Pde6
2L	2543228	2L_2543228_SNP [dm3] 2L_2543228_SNP [dm6]	G	A	8.437e^-4	0.614	INTERGENIC
3R	14845898	3R_14845898_SNP [dm3] 3R_19020176_SNP [dm6]	A	G	8.485e^-4	0.614	DOWNSTREAM gukh INTRON gukh
2L	15625757	2L_15625757_SNP [dm3] 2L_15625757_SNP [dm6]	G	A	8.491e^-4	0.614	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7149658	2L_7149658_SNP [dm3] 2L_7149658_SNP [dm6]	G	A	8.491e^-4	0.614	INTRON Pvf3
3L	10183370	3L_10183370_SNP [dm3] 3L_10190270_SNP [dm6]	A	T	8.549e^-4	0.614	DOWNSTREAM ect INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6267352	3R_6267352_SNP [dm3] 3R_10441630_SNP [dm6]	A	C	8.566e^-4	0.614	INTERGENIC
2L	1519013	2L_1519013_SNP [dm3] 2L_1519013_SNP [dm6]	T	C	8.609e^-4	0.614	UPSTREAM halo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	1519015	2L_1519015_SNP [dm3] 2L_1519015_SNP [dm6]	C	T	8.609e^-4	0.614	UPSTREAM halo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	1519022	2L_1519022_DEL [dm3] 2L_1519022_DEL [dm6]	CACAG	C	8.609e^-4	0.614	UPSTREAM halo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8694779	2R_8694779_SNP [dm3] 2R_12807274_SNP [dm6]	T	G	8.610e^-4	0.614	INTRON CG17580
3L	18678388	3L_18678388_SNP [dm3] 3L_18685288_SNP [dm6]	T	C	8.610e^-4	0.614	NON_SYNONYMOUS_CODING Cyp12c1	TF binding site mE1_TFBS_sens
3L	18686706	3L_18686706_SNP [dm3] 3L_18693606_SNP [dm6]	C	T	8.610e^-4	0.614	UPSTREAM CG6893 EXON CR43987
3L	8235933	3L_8235933_DEL [dm3] 3L_8242833_DEL [dm6]	TATAC	T	8.631e^-4	0.614	INTRON Dscam4
3R	10117228	3R_10117228_SNP [dm3] 3R_14291506_SNP [dm6]	A	G	8.631e^-4	0.614	INTRON CG12207
3R	15125927	3R_15125927_SNP [dm3] 3R_19300205_SNP [dm6]	A	G	8.631e^-4	0.614	INTERGENIC
3R	15125934	3R_15125934_SNP [dm3] 3R_19300212_SNP [dm6]	C	T	8.631e^-4	0.614	INTERGENIC
3R	15125947	3R_15125947_SNP [dm3] 3R_19300225_SNP [dm6]	A	G	8.631e^-4	0.614	INTERGENIC
3R	15125948	3R_15125948_SNP [dm3] 3R_19300226_SNP [dm6]	A	T	8.631e^-4	0.614	INTERGENIC
3R	15125954	3R_15125954_SNP [dm3] 3R_19300232_SNP [dm6]	T	A	8.631e^-4	0.614	INTERGENIC
3R	15125958	3R_15125958_INS [dm3] 3R_19300236_INS [dm6]	C	CGC	8.631e^-4	0.614	INTERGENIC
3R	23546655	3R_23546655_SNP [dm3] 3R_27720933_SNP [dm6]	G	A	8.631e^-4	0.614	INTERGENIC
3R	24145267	3R_24145267_SNP [dm3] 3R_28319545_SNP [dm6]	T	C	8.631e^-4	0.614	UTR_3_PRIME larp
X	6334074	X_6334074_DEL [dm3] X_6440041_DEL [dm6]	AA	T	8.631e^-4	0.614	INTRON CG42340
2R	17779560	2R_17779560_SNP [dm3] 2R_21892055_SNP [dm6]	G	A	8.662e^-4	0.614	INTRON Fili	TF binding site BDTNP1_TFBS_twi
3L	19447978	3L_19447978_SNP [dm3] 3L_19454878_SNP [dm6]	T	G	8.662e^-4	0.614	EXON CR45434	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13197778	2R_13197778_SNP [dm3] 2R_17310273_SNP [dm6]	C	G	8.666e^-4	0.614	INTRON mbl
2R	13198033	2R_13198033_SNP [dm3] 2R_17310528_SNP [dm6]	G	A	8.666e^-4	0.614	INTRON mbl
2R	13199979	2R_13199979_SNP [dm3] 2R_17312474_SNP [dm6]	G	T	8.666e^-4	0.614	INTRON mbl
2R	13200005	2R_13200005_SNP [dm3] 2R_17312500_SNP [dm6]	A	C	8.666e^-4	0.614	INTRON mbl
2R	13201445	2R_13201445_SNP [dm3] 2R_17313940_SNP [dm6]	A	T	8.666e^-4	0.614	INTRON mbl
2R	13201548	2R_13201548_SNP [dm3] 2R_17314043_SNP [dm6]	C	A	8.666e^-4	0.614	INTRON mbl
2R	13201590	2R_13201590_SNP [dm3] 2R_17314085_SNP [dm6]	A	G	8.666e^-4	0.614	INTRON mbl
2R	13201742	2R_13201742_SNP [dm3] 2R_17314237_SNP [dm6]	G	A	8.666e^-4	0.614	INTRON mbl
2R	17032794	2R_17032794_SNP [dm3] 2R_21145289_SNP [dm6]	G	A	8.666e^-4	0.614	SYNONYMOUS_CODING Xbp1 UTR_3_PRIME Xbp1 UPSTREAM Hmg-2
2R	17978686	2R_17978686_SNP [dm3] 2R_22091181_SNP [dm6]	A	G	8.666e^-4	0.614	NON_SYNONYMOUS_CODING CG44163 UPSTREAM CG43393 DOWNSTREAM CG11073
2R	18986646	2R_18986646_SNP [dm3] 2R_23099123_SNP [dm6]	T	A	8.666e^-4	0.614	DOWNSTREAM RpL37b INTERGENIC
2R	18986765	2R_18986765_SNP [dm3] 2R_23099242_SNP [dm6]	T	C	8.666e^-4	0.614	DOWNSTREAM RpL37b INTERGENIC
3R	26597739	3R_26597739_SNP [dm3] 3R_30772017_SNP [dm6]	G	A	8.666e^-4	0.614	INTRON zfh1
3L	8809756	3L_8809756_SNP [dm3] 3L_8816656_SNP [dm6]	C	G	8.681e^-4	0.614	INTERGENIC
3R	27145784	3R_27145784_SNP [dm3] 3R_31320062_SNP [dm6]	T	C	8.681e^-4	0.614	INTRON CG34347
3L	3292971	3L_3292971_SNP [dm3] 3L_3292971_SNP [dm6]	C	T	8.694e^-4	0.614	INTRON CG12009
3R	19920872	3R_19920872_SNP [dm3] 3R_24095150_SNP [dm6]	G	T	8.727e^-4	0.614	INTRON 4EHP
3L	1038074	3L_1038074_SNP [dm3] 3L_1038074_SNP [dm6]	G	A	8.729e^-4	0.614	UTR_3_PRIME bab1
3L	14389576	3L_14389576_SNP [dm3] 3L_14396476_SNP [dm6]	G	T	8.729e^-4	0.614	INTERGENIC
3L	18850150	3L_18850150_SNP [dm3] 3L_18857050_SNP [dm6]	A	G	8.729e^-4	0.614	EXON CR45388
3R	17083574	3R_17083574_SNP [dm3] 3R_21257852_SNP [dm6]	C	T	8.729e^-4	0.614	INTRON ETHR
3L	3292970	3L_3292970_SNP [dm3] 3L_3292970_SNP [dm6]	T	C	8.747e^-4	0.614	INTRON CG12009
3R	15208895	3R_15208895_SNP [dm3] 3R_19383173_SNP [dm6]	G	T	8.761e^-4	0.614	INTRON Ino80	TF binding site mE1_TFBS_HSA
2R	4725971	2R_4725971_SNP [dm3] 2R_8838466_SNP [dm6]	T	A	8.782e^-4	0.614	INTRON sns	TF binding site mE1_TFBS_chinmo
2R	10717585	2R_10717585_SNP [dm3] 2R_14830080_SNP [dm6]	A	T	8.815e^-4	0.614	INTERGENIC
3L	7392849	3L_7392849_DEL [dm3] 3L_7399749_DEL [dm6]	CAC	C	8.867e^-4	0.614	UTR_3_PRIME CG8562 UPSTREAM CG18417
3R	10288114	3R_10288114_SNP [dm3] 3R_14462392_SNP [dm6]	C	T	8.867e^-4	0.614	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2051953	3L_2051953_SNP [dm3] 3L_2051953_SNP [dm6]	G	T	8.893e^-4	0.614	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	2333241	X_2333241_SNP [dm3] X_2439208_SNP [dm6]	G	T	8.909e^-4	0.614	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13101635	3L_13101635_SNP [dm3] 3L_13108535_SNP [dm6]	C	A	8.924e^-4	0.614	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3933975	3L_3933975_SNP [dm3] 3L_3933975_SNP [dm6]	C	T	8.945e^-4	0.614	UPSTREAM Eip63F-1 & 1 other INTRON Eip63F-1
3L	7373890	3L_7373890_SNP [dm3] 3L_7380790_SNP [dm6]	C	A	8.945e^-4	0.614	SYNONYMOUS_CODING SMSr UPSTREAM smid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	16182155	2R_16182155_SNP [dm3] 2R_20294650_SNP [dm6]	G	A	8.945e^-4	0.614	EXON CR44639
3R	22110131	3R_22110131_SNP [dm3] 3R_26284409_SNP [dm6]	T	C	8.978e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	25612490	3R_25612490_SNP [dm3] 3R_29786768_SNP [dm6]	C	T	8.978e^-4	0.614	INTRON kay
3R	24339627	3R_24339627_SNP [dm3] 3R_28513905_SNP [dm6]	G	T	9.000e^-4	0.614	INTRON Dhc98D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15401516	3R_15401516_SNP [dm3] 3R_19575794_SNP [dm6]	A	T	9.047e^-4	0.614	INTRON Dys
3R	15401519	3R_15401519_SNP [dm3] 3R_19575797_SNP [dm6]	C	A	9.047e^-4	0.614	INTRON Dys
3R	9195213	3R_9195213_SNP [dm3] 3R_13369491_SNP [dm6]	G	A	9.047e^-4	0.614	UPSTREAM CheA87a DOWNSTREAM Dic1 & 1 other INTERGENIC
2L	498864	2L_498864_SNP [dm3] 2L_498864_SNP [dm6]	G	A	9.124e^-4	0.614	INTRON ush
3R	15125709	3R_15125709_SNP [dm3] 3R_19299987_SNP [dm6]	G	A	9.166e^-4	0.614	INTERGENIC
3R	18480852	3R_18480852_SNP [dm3] 3R_22655130_SNP [dm6]	C	G	9.181e^-4	0.614	INTRON CG45058
2L	9206507	2L_9206507_SNP [dm3] 2L_9206507_SNP [dm6]	A	T	9.245e^-4	0.614	INTRON tai
2L	20115740	2L_20115740_SNP [dm3] 2L_20115740_SNP [dm6]	C	T	9.253e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20115752	2L_20115752_DEL [dm3] 2L_20115752_DEL [dm6]	GACATAAAAATCG...	G	9.253e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20117465	2L_20117465_SNP [dm3] 2L_20117465_SNP [dm6]	G	A	9.253e^-4	0.614	INTERGENIC	transposable element FlyBase
2L	20117880	2L_20117880_SNP [dm3] 2L_20117880_SNP [dm6]	C	G	9.253e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	20119848	2L_20119848_SNP [dm3] 2L_20119848_SNP [dm6]	A	G	9.253e^-4	0.614	INTERGENIC	TF binding site mE1_TFBS_sens
2L	4659764	2L_4659764_SNP [dm3] 2L_4659764_SNP [dm6]	C	T	9.253e^-4	0.614	INTERGENIC
2R	4381995	2R_4381995_SNP [dm3] 2R_8494490_SNP [dm6]	C	T	9.253e^-4	0.614	UPSTREAM mtt INTRON mtt
2R	4687824	2R_4687824_SNP [dm3] 2R_8800319_SNP [dm6]	C	T	9.253e^-4	0.614	INTRON sns	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5361287	3L_5361287_SNP [dm3] 3L_5368187_SNP [dm6]	T	G	9.256e^-4	0.614	UPSTREAM CG10635 DOWNSTREAM Membrin INTERGENIC
3R	25434908	3R_25434908_SNP [dm3] 3R_29609186_SNP [dm6]	T	C	9.291e^-4	0.614	DOWNSTREAM Diedel2 INTRON alph
2R	5526431	2R_5526431_SNP [dm3] 2R_9638926_SNP [dm6]	G	T	9.303e^-4	0.614	INTRON Mmp2
X	14252547	X_14252547_SNP [dm3] X_14358514_SNP [dm6]	C	T	9.354e^-4	0.614	INTRON dpr8
2R	19024038	2R_19024038_SNP [dm3] 2R_23136515_SNP [dm6]	T	G	9.380e^-4	0.614	INTERGENIC
2L	16479342	2L_16479342_SNP [dm3] 2L_16479342_SNP [dm6]	C	G	9.425e^-4	0.614	INTRON dac
X	5996641	X_5996641_SNP [dm3] X_6102608_SNP [dm6]	T	C	9.425e^-4	0.614	SYNONYMOUS_CODING Nep1	TF binding site mE1_TFBS_chinmo
3L	15643042	3L_15643042_SNP [dm3] 3L_15649942_SNP [dm6]	A	T	9.450e^-4	0.614	UTR_5_PRIME Eig71Eb UPSTREAM Eig71Ea & 1 other DOWNSTREAM CG43083
2L	17578245	2L_17578245_SNP [dm3] 2L_17578245_SNP [dm6]	G	C	9.488e^-4	0.614	INTERGENIC
2L	17578305	2L_17578305_SNP [dm3] 2L_17578305_SNP [dm6]	G	C	9.488e^-4	0.614	INTERGENIC
2L	17578315	2L_17578315_SNP [dm3] 2L_17578315_SNP [dm6]	T	A	9.488e^-4	0.614	INTERGENIC
2R	12081799	2R_12081799_SNP [dm3] 2R_16194294_SNP [dm6]	T	C	9.496e^-4	0.614	UTR_3_PRIME calypso DOWNSTREAM clu
2L	13448369	2L_13448369_SNP [dm3] 2L_13448369_SNP [dm6]	C	G	9.516e^-4	0.614	NON_SYNONYMOUS_CODING Hsp60D INTRON CG42784
2R	4471211	2R_4471211_SNP [dm3] 2R_8583706_SNP [dm6]	C	T	9.516e^-4	0.614	UTR_5_PRIME CG42326
2R	4687673	2R_4687673_SNP [dm3] 2R_8800168_SNP [dm6]	T	C	9.516e^-4	0.614	INTRON sns	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2511299	3L_2511299_SNP [dm3] 3L_2511299_SNP [dm6]	T	G	9.528e^-4	0.614	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4928900	2R_4928900_SNP [dm3] 2R_9041395_SNP [dm6]	A	G	9.541e^-4	0.614	SYNONYMOUS_CODING Ance-4 DOWNSTREAM PPO2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3517194	2R_3517194_SNP [dm3] 2R_7629689_SNP [dm6]	G	A	9.584e^-4	0.614	INTRON CG43340
3R	18254281	3R_18254281_SNP [dm3] 3R_22428559_SNP [dm6]	C	A	9.596e^-4	0.614	INTRON CG13847
3R	17747781	3R_17747781_SNP [dm3] 3R_21922059_SNP [dm6]	G	A	9.604e^-4	0.614	INTERGENIC
X	18773703	X_18773703_INS [dm3] X_18879670_INS [dm6]	T	TT	9.652e^-4	0.614	UTR_3_PRIME CG34401
X	7500562	X_7500562_SNP [dm3] X_7606529_SNP [dm6]	T	A	9.669e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	12187587	X_12187587_SNP [dm3] X_12293554_SNP [dm6]	C	T	9.674e^-4	0.614	INTRON Ten-a
3L	9136489	3L_9136489_SNP [dm3] 3L_9143389_SNP [dm6]	C	T	9.693e^-4	0.614	INTRON nwk
3R	15763551	3R_15763551_SNP [dm3] 3R_19937829_SNP [dm6]	A	G	9.693e^-4	0.614	SYNONYMOUS_CODING Hs6st	TF binding site mE1_TFBS_chinmo
3R	16768585	3R_16768585_DEL [dm3] 3R_20942863_DEL [dm6]	ACAATGAAATTGACGGGCGG...	A	9.693e^-4	0.614	INTRON CG31191
3R	21017571	3R_21017571_SNP [dm3] 3R_25191849_SNP [dm6]	A	G	9.693e^-4	0.614	SYNONYMOUS_CODING dan INTRON lobo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22629139	3R_22629139_SNP [dm3] 3R_26803417_SNP [dm6]	T	C	9.693e^-4	0.614	INTRON Tl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	24647051	3R_24647051_SNP [dm3] 3R_28821329_SNP [dm6]	A	G	9.693e^-4	0.614	SYNONYMOUS_CODING CG1647	TF binding site mE1_TFBS_cad
3L	6974088	3L_6974088_SNP [dm3] 3L_6980988_SNP [dm6]	T	C	9.698e^-4	0.614	UPSTREAM Galphai INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	6353759	2L_6353759_SNP [dm3] 2L_6353759_SNP [dm6]	G	A	9.704e^-4	0.614	SYNONYMOUS_CODING ppk7	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6353771	2L_6353771_SNP [dm3] 2L_6353771_SNP [dm6]	G	A	9.704e^-4	0.614	SYNONYMOUS_CODING ppk7	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18700876	3L_18700876_SNP [dm3] 3L_18707776_SNP [dm6]	G	A	9.722e^-4	0.614	UPSTREAM CR44674 INTERGENIC
3R	25433281	3R_25433281_SNP [dm3] 3R_29607559_SNP [dm6]	A	T	9.722e^-4	0.614	UPSTREAM Diedel2 INTRON alph
2L	2413582	2L_2413582_SNP [dm3] 2L_2413582_SNP [dm6]	G	A	9.774e^-4	0.614	INTRON CG18641
3R	26030565	3R_26030565_SNP [dm3] 3R_30204843_SNP [dm6]	G	T	9.782e^-4	0.614	INTERGENIC
2L	7561738	2L_7561738_SNP [dm3] 2L_7561738_SNP [dm6]	A	C	9.785e^-4	0.614	INTRON RapGAP1
2R	13921451	2R_13921451_SNP [dm3] 2R_18033946_SNP [dm6]	T	C	9.785e^-4	0.614	INTERGENIC
2R	13921462	2R_13921462_SNP [dm3] 2R_18033957_SNP [dm6]	C	T	9.785e^-4	0.614	INTERGENIC
2R	15119911	2R_15119911_SNP [dm3] 2R_19232406_SNP [dm6]	G	C	9.785e^-4	0.614	INTRON cora	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17326123	2R_17326123_SNP [dm3] 2R_21438618_SNP [dm6]	G	C	9.785e^-4	0.614	INTRON Sdc
2R	17326132	2R_17326132_SNP [dm3] 2R_21438627_SNP [dm6]	G	A	9.785e^-4	0.614	INTRON Sdc
2R	4723619	2R_4723619_SNP [dm3] 2R_8836114_SNP [dm6]	T	A	9.785e^-4	0.614	INTRON sns
2R	7540941	2R_7540941_SNP [dm3] 2R_11653436_SNP [dm6]	A	T	9.785e^-4	0.614	UPSTREAM tRNA:CR30254 DOWNSTREAM tRNA:M2:48Ba INTRON Roc2
2R	7541461	2R_7541461_SNP [dm3] 2R_11653956_SNP [dm6]	T	A	9.785e^-4	0.614	UPSTREAM CG13198 INTRON Roc2
3L	17630904	3L_17630904_SNP [dm3] 3L_17637804_SNP [dm6]	G	A	9.785e^-4	0.614	UTR_3_PRIME CG7497 DOWNSTREAM Pep
3L	17631016	3L_17631016_SNP [dm3] 3L_17637916_SNP [dm6]	T	A	9.785e^-4	0.614	UTR_3_PRIME CG7497 DOWNSTREAM Pep & 1 other
3L	4822361	3L_4822361_SNP [dm3] 3L_4822361_SNP [dm6]	G	A	9.785e^-4	0.614	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4822481	3L_4822481_SNP [dm3] 3L_4822481_SNP [dm6]	C	T	9.785e^-4	0.614	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4822766	3L_4822766_SNP [dm3] 3L_4822766_SNP [dm6]	T	C	9.785e^-4	0.614	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4822772	3L_4822772_SNP [dm3] 3L_4822772_SNP [dm6]	G	A	9.785e^-4	0.614	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4822829	3L_4822829_SNP [dm3] 3L_4822829_SNP [dm6]	A	G	9.785e^-4	0.614	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7367465	3L_7367465_SNP [dm3] 3L_7374365_SNP [dm6]	C	T	9.785e^-4	0.614	UTR_3_PRIME SMSr DOWNSTREAM akirin	TF binding site BDTNP1_TFBS_dl
3R	18155589	3R_18155589_SNP [dm3] 3R_22329867_SNP [dm6]	C	T	9.785e^-4	0.614	NON_SYNONYMOUS_CODING CG7080	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22584013	3R_22584013_SNP [dm3] 3R_26758291_SNP [dm6]	A	T	9.785e^-4	0.614	UPSTREAM CR45562 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15181040	X_15181040_SNP [dm3] X_15287007_SNP [dm6]	A	G	9.785e^-4	0.614	INTERGENIC
X	17505896	X_17505896_SNP [dm3] X_17611863_SNP [dm6]	G	T	9.785e^-4	0.614	INTERGENIC
X	18489981	X_18489981_SNP [dm3] X_18595948_SNP [dm6]	T	C	9.785e^-4	0.614	INTERGENIC
X	8657991	X_8657991_SNP [dm3] X_8763958_SNP [dm6]	C	T	9.785e^-4	0.614	INTRON Lim1	TF binding site mE1_TFBS_cnc
3R	12207401	3R_12207401_SNP [dm3] 3R_16381679_SNP [dm6]	G	T	9.789e^-4	0.614	INTRON ss
3R	19447700	3R_19447700_SNP [dm3] 3R_23621978_SNP [dm6]	G	C	9.789e^-4	0.614	INTRON CG31145
2L	14029525	2L_14029525_SNP [dm3] 2L_14029525_SNP [dm6]	T	G	9.805e^-4	0.614	UTR_3_PRIME CG18095 DOWNSTREAM CG18095 & 1 other INTRON CG18095
2L	6514633	2L_6514633_SNP [dm3] 2L_6514633_SNP [dm6]	T	G	9.805e^-4	0.614	INTRON CG31637
2L	6514634	2L_6514634_SNP [dm3] 2L_6514634_SNP [dm6]	C	A	9.805e^-4	0.614	INTRON CG31637
3R	19447585	3R_19447585_SNP [dm3] 3R_23621863_SNP [dm6]	C	T	9.814e^-4	0.614	INTRON CG31145
2R	12076765	2R_12076765_SNP [dm3] 2R_16189260_SNP [dm6]	G	A	9.849e^-4	0.614	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6348237	3L_6348237_SNP [dm3] 3L_6355137_SNP [dm6]	T	C	9.850e^-4	0.614	INTERGENIC
3L	6348240	3L_6348240_SNP [dm3] 3L_6355140_SNP [dm6]	T	C	9.850e^-4	0.614	INTERGENIC
3L	6348243	3L_6348243_SNP [dm3] 3L_6355143_SNP [dm6]	G	T	9.850e^-4	0.614	INTERGENIC
2R	16266806	2R_16266806_SNP [dm3] 2R_20379301_SNP [dm6]	A	C	9.860e^-4	0.614	INTERGENIC
X	12095874	X_12095874_SNP [dm3] X_12201841_SNP [dm6]	A	G	9.860e^-4	0.614	INTRON Ten-a
X	12095876	X_12095876_SNP [dm3] X_12201843_SNP [dm6]	C	T	9.860e^-4	0.614	INTRON Ten-a
X	12095878	X_12095878_SNP [dm3] X_12201845_SNP [dm6]	A	C	9.860e^-4	0.614	INTRON Ten-a
3R	16252124	3R_16252124_SNP [dm3] 3R_20426402_SNP [dm6]	G	A	9.883e^-4	0.614	INTRON Gfrl
3R	16252166	3R_16252166_SNP [dm3] 3R_20426444_SNP [dm6]	A	T	9.883e^-4	0.614	INTRON Gfrl
3R	16252434	3R_16252434_SNP [dm3] 3R_20426712_SNP [dm6]	G	A	9.883e^-4	0.614	INTRON Gfrl
2L	12134366	2L_12134366_SNP [dm3] 2L_12134366_SNP [dm6]	C	G	9.984e^-4	0.614	UPSTREAM rho-6 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	12134377	2L_12134377_SNP [dm3] 2L_12134377_SNP [dm6]	A	G	9.984e^-4	0.614	UPSTREAM rho-6 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	12134392	2L_12134392_SNP [dm3] 2L_12134392_SNP [dm6]	A	T	9.984e^-4	0.614	UPSTREAM rho-6 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	12134395	2L_12134395_SNP [dm3] 2L_12134395_SNP [dm6]	C	T	9.984e^-4	0.614	UPSTREAM rho-6 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	12134543	2L_12134543_SNP [dm3] 2L_12134543_SNP [dm6]	A	G	9.984e^-4	0.614	INTERGENIC	TF binding site mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

LogMAlpha phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results