DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.722e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

740 significant hits at p-value < 0.001.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	18067911	2R_18067911_SNP [dm3] 2R_22180406_SNP [dm6]	G	A	2.188e^-5	0.944	INTRON CG11170 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	2922928	X_2922928_SNP [dm3] X_3028895_SNP [dm6]	C	T	4.890e^-5	0.944	INTRON kirre
2R	4451876	2R_4451876_SNP [dm3] 2R_8564371_SNP [dm6]	T	C	1.033e^-4	0.944	NON_SYNONYMOUS_CODING Cyp6a14
2R	16570390	2R_16570390_SNP [dm3] 2R_20682885_SNP [dm6]	T	A	1.182e^-4	0.944	INTERGENIC
2R	16570423	2R_16570423_SNP [dm3] 2R_20682918_SNP [dm6]	A	C	1.182e^-4	0.944	INTERGENIC
2R	17888920	2R_17888920_SNP [dm3] 2R_22001415_SNP [dm6]	A	G	1.182e^-4	0.944	INTRON CG34370
2R	17888947	2R_17888947_SNP [dm3] 2R_22001442_SNP [dm6]	G	T	1.182e^-4	0.944	INTRON CG34370
2R	19623914	2R_19623914_SNP [dm3] 2R_23736391_SNP [dm6]	G	A	1.182e^-4	0.944	SYNONYMOUS_CODING egl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19975175	2R_19975175_SNP [dm3] 2R_24087652_SNP [dm6]	G	A	1.182e^-4	0.944	SYNONYMOUS_CODING snama
3L	3138363	3L_3138363_SNP [dm3] 3L_3138363_SNP [dm6]	A	T	1.182e^-4	0.944	INTRON CG11537
3L	3138458	3L_3138458_SNP [dm3] 3L_3138458_SNP [dm6]	A	G	1.182e^-4	0.944	INTRON CG11537
3L	5820932	3L_5820932_SNP [dm3] 3L_5827832_SNP [dm6]	A	T	1.182e^-4	0.944	INTRON vn
3L	763665	3L_763665_SNP [dm3] 3L_763665_SNP [dm6]	T	C	1.182e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8305319	3L_8305319_SNP [dm3] 3L_8312219_SNP [dm6]	T	A	1.182e^-4	0.944	INTRON CG7185	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8792043	3L_8792043_SNP [dm3] 3L_8798943_SNP [dm6]	C	T	1.182e^-4	0.944	SYNONYMOUS_CODING CG13310 DOWNSTREAM Fhos
3R	921448	3R_921448_SNP [dm3] 3R_5095726_SNP [dm6]	A	G	1.182e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	14939481	2R_14939481_SNP [dm3] 2R_19051976_SNP [dm6]	C	T	1.193e^-4	0.944	INTERGENIC
2R	1837087	2R_1837087_SNP [dm3] 2R_5949582_SNP [dm6]	C	G	1.193e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9515731	2R_9515731_SNP [dm3] 2R_13628226_SNP [dm6]	A	G	1.193e^-4	0.944	INTRON fas
X	6388208	X_6388208_SNP [dm3] X_6494175_SNP [dm6]	G	A	1.193e^-4	0.944	INTRON CG42340
3L	6635637	3L_6635637_SNP [dm3] 3L_6642537_SNP [dm6]	A	C	1.258e^-4	0.944	EXON CR45239
2L	5183250	2L_5183250_SNP [dm3] 2L_5183250_SNP [dm6]	G	A	1.344e^-4	0.944	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	9755362	2R_9755362_SNP [dm3] 2R_13867857_SNP [dm6]	A	G	2.112e^-4	0.944	INTRON shot
2R	11291890	2R_11291890_SNP [dm3] 2R_15404385_SNP [dm6]	T	A	2.114e^-4	0.944	UPSTREAM CR45020 INTRON CG43729
2R	12023688	2R_12023688_SNP [dm3] 2R_16136183_SNP [dm6]	A	G	2.114e^-4	0.944	SPLICE_SITE_REGION spin INTRON spin
2R	12023760	2R_12023760_SNP [dm3] 2R_16136255_SNP [dm6]	A	T	2.114e^-4	0.944	SYNONYMOUS_CODING spin UTR_3_PRIME spin
2R	17847158	2R_17847158_SNP [dm3] 2R_21959653_SNP [dm6]	A	T	2.114e^-4	0.944	INTERGENIC
2R	18124218	2R_18124218_SNP [dm3] 2R_22236713_SNP [dm6]	G	T	2.114e^-4	0.944	EXON CR44755
2R	18126974	2R_18126974_SNP [dm3] 2R_22239469_SNP [dm6]	G	A	2.114e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18128273	2R_18128273_SNP [dm3] 2R_22240768_SNP [dm6]	C	A	2.114e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18128297	2R_18128297_SNP [dm3] 2R_22240792_SNP [dm6]	T	C	2.114e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18135920	2R_18135920_SNP [dm3] 2R_22248415_SNP [dm6]	G	A	2.114e^-4	0.944	INTRON dve	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
2R	19552037	2R_19552037_DEL [dm3] 2R_23664514_DEL [dm6]	ATA	A	2.114e^-4	0.944	INTRON Pde8
2R	7252779	2R_7252779_SNP [dm3] 2R_11365274_SNP [dm6]	C	G	2.114e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7252816	2R_7252816_SNP [dm3] 2R_11365311_SNP [dm6]	A	G	2.114e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1607638	3L_1607638_SNP [dm3] 3L_1607638_SNP [dm6]	G	A	2.114e^-4	0.944	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	18926255	X_18926255_SNP [dm3] X_19032222_SNP [dm6]	G	A	2.114e^-4	0.944	INTERGENIC
2L	482789	2L_482789_SNP [dm3] 2L_482789_SNP [dm6]	T	C	2.123e^-4	0.944	INTRON ush	TF binding site mE1_TFBS_inv
2L	482813	2L_482813_SNP [dm3] 2L_482813_SNP [dm6]	A	C	2.123e^-4	0.944	INTRON ush	TF binding site mE1_TFBS_inv
3L	4980305	3L_4980305_SNP [dm3] 3L_4980305_SNP [dm6]	G	A	2.161e^-4	0.944	SYNONYMOUS_CODING CG17030 UPSTREAM CR45685 INTRON Con	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	19973758	2R_19973758_SNP [dm3] 2R_24086235_SNP [dm6]	T	C	2.276e^-4	0.944	UTR_3_PRIME CG16786 UPSTREAM snama DOWNSTREAM CG16786	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	9737845	2R_9737845_SNP [dm3] 2R_13850340_SNP [dm6]	C	T	2.276e^-4	0.944	SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
X	10282330	X_10282330_SNP [dm3] X_10388297_SNP [dm6]	C	T	2.276e^-4	0.944	INTRON flw
X	10437198	X_10437198_SNP [dm3] X_10543165_SNP [dm6]	T	G	2.276e^-4	0.944	INTRON spri
X	5800304	X_5800304_SNP [dm3] X_5906271_SNP [dm6]	G	A	2.276e^-4	0.944	SYNONYMOUS_CODING CG4020 DOWNSTREAM Act5C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17451160	2L_17451160_SNP [dm3] 2L_17451160_SNP [dm6]	C	A	2.375e^-4	0.944	UPSTREAM dl INTERGENIC
2L	17451161	2L_17451161_SNP [dm3] 2L_17451161_SNP [dm6]	T	C	2.375e^-4	0.944	UPSTREAM dl INTERGENIC
2L	17451170	2L_17451170_SNP [dm3] 2L_17451170_SNP [dm6]	A	T	2.375e^-4	0.944	UPSTREAM dl INTERGENIC
2L	17451202	2L_17451202_SNP [dm3] 2L_17451202_SNP [dm6]	T	C	2.375e^-4	0.944	UPSTREAM dl INTERGENIC
2R	10012175	2R_10012175_SNP [dm3] 2R_14124670_SNP [dm6]	T	C	2.375e^-4	0.944	INTRON Prosap
2R	1326819	2R_1326819_SNP [dm3] 2R_5439314_SNP [dm6]	C	T	2.375e^-4	0.944	INTRON laccase2
2R	19973961	2R_19973961_SNP [dm3] 2R_24086438_SNP [dm6]	A	C	2.375e^-4	0.944	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19973965	2R_19973965_SNP [dm3] 2R_24086442_SNP [dm6]	T	C	2.375e^-4	0.944	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19973971	2R_19973971_SNP [dm3] 2R_24086448_SNP [dm6]	G	A	2.375e^-4	0.944	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19973994	2R_19973994_SNP [dm3] 2R_24086471_SNP [dm6]	A	G	2.375e^-4	0.944	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19974009	2R_19974009_SNP [dm3] 2R_24086486_SNP [dm6]	T	A	2.375e^-4	0.944	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19974064	2R_19974064_SNP [dm3] 2R_24086541_SNP [dm6]	A	T	2.375e^-4	0.944	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19974286	2R_19974286_SNP [dm3] 2R_24086763_SNP [dm6]	T	C	2.375e^-4	0.944	UTR_5_PRIME snama DOWNSTREAM CG16786 INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19974438	2R_19974438_SNP [dm3] 2R_24086915_SNP [dm6]	G	A	2.375e^-4	0.944	DOWNSTREAM CG16786 INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19974450	2R_19974450_SNP [dm3] 2R_24086927_SNP [dm6]	T	A	2.375e^-4	0.944	DOWNSTREAM CG16786 INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19974451	2R_19974451_SNP [dm3] 2R_24086928_SNP [dm6]	C	T	2.375e^-4	0.944	DOWNSTREAM CG16786 INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19974511	2R_19974511_SNP [dm3] 2R_24086988_SNP [dm6]	A	G	2.375e^-4	0.944	DOWNSTREAM CG16786 INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19974982	2R_19974982_SNP [dm3] 2R_24087459_SNP [dm6]	C	T	2.375e^-4	0.944	INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9383529	3L_9383529_SNP [dm3] 3L_9390429_SNP [dm6]	T	C	2.375e^-4	0.944	SPLICE_SITE_REGION CG4080 INTRON CG4080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9383540	3L_9383540_SNP [dm3] 3L_9390440_SNP [dm6]	A	C	2.375e^-4	0.944	INTRON CG4080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9957298	3L_9957298_SNP [dm3] 3L_9964198_SNP [dm6]	C	A	2.375e^-4	0.944	INTRON CG34356
X	10436726	X_10436726_SNP [dm3] X_10542693_SNP [dm6]	G	A	2.375e^-4	0.944	INTRON spri
X	14996063	X_14996063_SNP [dm3] X_15102030_SNP [dm6]	T	C	2.375e^-4	0.944	SYNONYMOUS_CODING Rab3-GEF
X	18168959	X_18168959_SNP [dm3] X_18274926_SNP [dm6]	C	T	2.375e^-4	0.944	INTERGENIC
X	5206748	X_5206748_SNP [dm3] X_5312715_SNP [dm6]	T	C	2.375e^-4	0.944	SYNONYMOUS_CODING dhd UPSTREAM TrxT & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	5800272	X_5800272_SNP [dm3] X_5906239_SNP [dm6]	A	G	2.375e^-4	0.944	NON_SYNONYMOUS_CODING CG4020 DOWNSTREAM Act5C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	8902488	X_8902488_SNP [dm3] X_9008455_SNP [dm6]	G	T	2.375e^-4	0.944	INTRON rdgA & 1 other
X	8902505	X_8902505_SNP [dm3] X_9008472_SNP [dm6]	T	G	2.375e^-4	0.944	INTRON rdgA & 1 other
X	8902549	X_8902549_SNP [dm3] X_9008516_SNP [dm6]	C	T	2.375e^-4	0.944	INTRON rdgA & 1 other
2R	19973851	2R_19973851_SNP [dm3] 2R_24086328_SNP [dm6]	G	C	2.401e^-4	0.944	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	4976964	3L_4976964_SNP [dm3] 3L_4976964_SNP [dm6]	T	A	2.401e^-4	0.944	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	4976977	3L_4976977_SNP [dm3] 3L_4976977_SNP [dm6]	G	A	2.401e^-4	0.944	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	4976990	3L_4976990_SNP [dm3] 3L_4976990_SNP [dm6]	A	T	2.401e^-4	0.944	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	7246322	3L_7246322_SNP [dm3] 3L_7253222_SNP [dm6]	C	T	2.403e^-4	0.944	DOWNSTREAM CR43470 INTRON CG14830
2L	3945988	2L_3945988_INS [dm3] 2L_3945988_INS [dm6]	C	CC	2.423e^-4	0.944	INTRON fred
2L	3945994	2L_3945994_SNP [dm3] 2L_3945994_SNP [dm6]	T	G	2.423e^-4	0.944	INTRON fred
2R	12023662	2R_12023662_SNP [dm3] 2R_16136157_SNP [dm6]	T	A	2.423e^-4	0.944	INTRON spin
2R	18135921	2R_18135921_SNP [dm3] 2R_22248416_SNP [dm6]	G	A	2.423e^-4	0.944	INTRON dve	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
X	9214682	X_9214682_SNP [dm3] X_9320649_SNP [dm6]	G	A	2.495e^-4	0.944	SYNONYMOUS_CODING c12.2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	17475011	3L_17475011_SNP [dm3] 3L_17481911_SNP [dm6]	C	T	2.645e^-4	0.944	UTR_5_PRIME CG6333 UPSTREAM CG6333
3L	6571634	3L_6571634_SNP [dm3] 3L_6578534_SNP [dm6]	G	A	2.645e^-4	0.944	INTRON CG18769 & 1 other
3R	14788411	3R_14788411_DEL [dm3] 3R_18962689_DEL [dm6]	GG	C	2.645e^-4	0.944	INTRON CG42613 & 1 other
3R	904312	3R_904312_DEL [dm3] 3R_5078590_DEL [dm6]	CC	C	2.645e^-4	0.944	UTR_3_PRIME corto
2R	11588679	2R_11588679_SNP [dm3] 2R_15701174_SNP [dm6]	G	C	2.862e^-4	0.944	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11588680	2R_11588680_SNP [dm3] 2R_15701175_SNP [dm6]	C	T	2.862e^-4	0.944	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16590635	2R_16590635_SNP [dm3] 2R_20703130_SNP [dm6]	G	T	2.862e^-4	0.944	INTRON dpr
2R	18132117	2R_18132117_SNP [dm3] 2R_22244612_SNP [dm6]	C	T	2.862e^-4	0.944	UTR_5_PRIME dve	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	4467106	2R_4467106_SNP [dm3] 2R_8579601_SNP [dm6]	A	T	2.862e^-4	0.944	INTRON CG42326
2R	7256050	2R_7256050_SNP [dm3] 2R_11368545_SNP [dm6]	T	C	2.862e^-4	0.944	SPLICE_SITE_REGION CG13204 INTRON CG13204	TF binding site BDTNP1_TFBS_dl
3L	10947660	3L_10947660_SNP [dm3] 3L_10954560_SNP [dm6]	G	T	2.862e^-4	0.944	INTERGENIC
3L	1613092	3L_1613092_SNP [dm3] 3L_1613092_SNP [dm6]	A	G	2.862e^-4	0.944	SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other
3L	2618605	3L_2618605_SNP [dm3] 3L_2618605_SNP [dm6]	T	A	2.862e^-4	0.944	INTRON Pxn
3L	8894003	3L_8894003_SNP [dm3] 3L_8900903_SNP [dm6]	A	T	2.862e^-4	0.944	INTRON TrpA1
X	16708646	X_16708646_DEL [dm3] X_16814613_DEL [dm6]	AAGC	TTT	2.862e^-4	0.944	DOWNSTREAM CR44129 INTRON CG4829	TF binding site BDTNP1_TFBS_dl
2R	17891772	2R_17891772_SNP [dm3] 2R_22004267_SNP [dm6]	A	G	2.905e^-4	0.944	INTRON CG34370
2R	19156865	2R_19156865_SNP [dm3] 2R_23269342_SNP [dm6]	T	G	2.905e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4658060	3R_4658060_SNP [dm3] 3R_8832338_SNP [dm6]	T	G	3.034e^-4	0.944	DOWNSTREAM pyd INTRON pyd
3L	4977983	3L_4977983_SNP [dm3] 3L_4977983_SNP [dm6]	G	A	3.098e^-4	0.944	INTRON Con
2R	11676477	2R_11676477_SNP [dm3] 2R_15788972_SNP [dm6]	T	G	3.118e^-4	0.944	INTRON Zasp52
2R	12023835	2R_12023835_SNP [dm3] 2R_16136330_SNP [dm6]	G	T	3.118e^-4	0.944	NON_SYNONYMOUS_CODING spin UTR_3_PRIME spin
2L	5924639	2L_5924639_SNP [dm3] 2L_5924639_SNP [dm6]	A	G	3.152e^-4	0.944	UPSTREAM CG9016 DOWNSTREAM CR43926 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9519384	2L_9519384_SNP [dm3] 2L_9519384_SNP [dm6]	A	G	3.152e^-4	0.944	INTRON CG33298
2L	9519400	2L_9519400_SNP [dm3] 2L_9519400_SNP [dm6]	C	T	3.152e^-4	0.944	SYNONYMOUS_CODING CG33298
3R	19262286	3R_19262286_SNP [dm3] 3R_23436564_SNP [dm6]	T	C	3.266e^-4	0.944	INTRON CG4374
X	19491072	X_19491072_SNP [dm3] X_19597039_SNP [dm6]	C	T	3.266e^-4	0.944	UPSTREAM RpS10b INTERGENIC
X	19491074	X_19491074_INS [dm3] X_19597041_INS [dm6]	T	ATTTG	3.266e^-4	0.944	UPSTREAM RpS10b INTERGENIC
X	19491080	X_19491080_SNP [dm3] X_19597047_SNP [dm6]	A	T	3.266e^-4	0.944	UPSTREAM RpS10b INTERGENIC
2R	19975004	2R_19975004_SNP [dm3] 2R_24087481_SNP [dm6]	G	C	3.330e^-4	0.944	INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9058583	3R_9058583_SNP [dm3] 3R_13232861_SNP [dm6]	G	A	3.335e^-4	0.944	INTRON Ace
2R	8613263	2R_8613263_SNP [dm3] 2R_12725758_SNP [dm6]	C	A	3.507e^-4	0.944	INTRON CG42663
2L	14894747	2L_14894747_SNP [dm3] 2L_14894747_SNP [dm6]	C	T	4.036e^-4	0.944	INTERGENIC
2L	14894804	2L_14894804_SNP [dm3] 2L_14894804_SNP [dm6]	T	C	4.036e^-4	0.944	INTERGENIC
2L	8149014	2L_8149014_SNP [dm3] 2L_8149014_SNP [dm6]	G	C	4.036e^-4	0.944	UTR_5_PRIME CG43394 DOWNSTREAM CG31606 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4480287	2R_4480287_SNP [dm3] 2R_8592782_SNP [dm6]	G	A	4.076e^-4	0.944	SPLICE_SITE_REGION CG43183 DOWNSTREAM CG14752 INTRON CG43183
3L	1913278	3L_1913278_SNP [dm3] 3L_1913278_SNP [dm6]	T	C	4.202e^-4	0.944	INTERGENIC
2R	14912023	2R_14912023_SNP [dm3] 2R_19024518_SNP [dm6]	T	A	4.208e^-4	0.944	INTRON 5-HT1B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5561987	2R_5561987_SNP [dm3] 2R_9674482_SNP [dm6]	A	G	4.208e^-4	0.944	INTRON Mmp2
3L	11851098	3L_11851098_SNP [dm3] 3L_11857998_SNP [dm6]	G	T	4.208e^-4	0.944	INTRON CG44837
3L	9609882	3L_9609882_DEL [dm3] 3L_9616782_DEL [dm6]	ACATATA	A	4.208e^-4	0.944	INTRON LanB2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	5615630	X_5615630_SNP [dm3] X_5721597_SNP [dm6]	T	C	4.208e^-4	0.944	UTR_3_PRIME CG32758
3R	2078773	3R_2078773_SNP [dm3] 3R_6253051_SNP [dm6]	A	G	4.254e^-4	0.944	INTERGENIC
2R	1212911	2R_1212911_SNP [dm3] 2R_5325406_SNP [dm6]	A	C	4.283e^-4	0.944	INTRON sxc
2L	848462	2L_848462_SNP [dm3] 2L_848462_SNP [dm6]	T	C	4.377e^-4	0.944	INTRON drongo	TF binding site mE1_TFBS_sens
2R	11450306	2R_11450306_SNP [dm3] 2R_15562801_SNP [dm6]	G	A	4.377e^-4	0.944	UTR_3_PRIME CG8195 DOWNSTREAM CG12963
2R	11450720	2R_11450720_SNP [dm3] 2R_15563215_SNP [dm6]	A	G	4.377e^-4	0.944	DOWNSTREAM CG12963 INTRON CG8195
2R	11450724	2R_11450724_SNP [dm3] 2R_15563219_SNP [dm6]	A	G	4.377e^-4	0.944	DOWNSTREAM CG12963 INTRON CG8195
2R	11451200	2R_11451200_SNP [dm3] 2R_15563695_SNP [dm6]	T	C	4.377e^-4	0.944	INTRON CG8195	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11472683	2R_11472683_SNP [dm3] 2R_15585178_SNP [dm6]	G	T	4.377e^-4	0.944	INTERGENIC
2R	11472685	2R_11472685_INS [dm3] 2R_15585180_INS [dm6]	C	CGAC	4.377e^-4	0.944	INTERGENIC
2R	12112862	2R_12112862_SNP [dm3] 2R_16225357_SNP [dm6]	G	C	4.377e^-4	0.944	UPSTREAM CG15706 INTRON CG15706
2R	14501449	2R_14501449_SNP [dm3] 2R_18613944_SNP [dm6]	A	G	4.377e^-4	0.944	NON_SYNONYMOUS_CODING CG10927 DOWNSTREAM mRpS28	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14502158	2R_14502158_SNP [dm3] 2R_18614653_SNP [dm6]	T	A	4.377e^-4	0.944	UPSTREAM CG5323 DOWNSTREAM CG10927 INTRON mRpS28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17027738	2R_17027738_SNP [dm3] 2R_21140233_SNP [dm6]	G	A	4.377e^-4	0.944	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	17029948	2R_17029948_INS [dm3] 2R_21142443_INS [dm6]	T	TAACATAGTTTAAAAAAT...	4.377e^-4	0.944	UTR_5_PRIME CG9406 UPSTREAM Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb mE1_TFBS_sens
2R	17029949	2R_17029949_SNP [dm3] 2R_21142444_SNP [dm6]	T	A	4.377e^-4	0.944	UTR_5_PRIME CG9406 UPSTREAM Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb mE1_TFBS_sens
2R	17035149	2R_17035149_SNP [dm3] 2R_21147644_SNP [dm6]	C	A	4.377e^-4	0.944	UTR_3_PRIME CG15657 DOWNSTREAM CG30389 & 1 other	TF binding site mE1_TFBS_cad
2R	17734882	2R_17734882_SNP [dm3] 2R_21847377_SNP [dm6]	G	T	4.377e^-4	0.944	INTERGENIC
2R	17734883	2R_17734883_SNP [dm3] 2R_21847378_SNP [dm6]	G	A	4.377e^-4	0.944	INTERGENIC
2R	17736379	2R_17736379_SNP [dm3] 2R_21848874_SNP [dm6]	G	T	4.377e^-4	0.944	UPSTREAM tRNA:CR30406 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18083549	2R_18083549_SNP [dm3] 2R_22196044_SNP [dm6]	T	G	4.377e^-4	0.944	INTRON Swim
2R	18122436	2R_18122436_SNP [dm3] 2R_22234931_SNP [dm6]	G	C	4.377e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_sens
2R	18122588	2R_18122588_SNP [dm3] 2R_22235083_SNP [dm6]	C	T	4.377e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_sens
2R	18122988	2R_18122988_SNP [dm3] 2R_22235483_SNP [dm6]	G	T	4.377e^-4	0.944	DOWNSTREAM CR44755 INTERGENIC	TF binding site mE1_TFBS_sens
2R	18123033	2R_18123033_SNP [dm3] 2R_22235528_SNP [dm6]	T	A	4.377e^-4	0.944	DOWNSTREAM CR44755 INTERGENIC	TF binding site mE1_TFBS_sens
2R	18750230	2R_18750230_SNP [dm3] 2R_22862707_SNP [dm6]	C	T	4.377e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	20475677	2R_20475677_SNP [dm3] 2R_24588154_SNP [dm6]	C	T	4.377e^-4	0.944	INTRON pio
2R	5613520	2R_5613520_SNP [dm3] 2R_9726015_SNP [dm6]	C	G	4.377e^-4	0.944	INTRON sqa
2R	9337456	2R_9337456_SNP [dm3] 2R_13449951_SNP [dm6]	C	T	4.377e^-4	0.944	UPSTREAM cnn & 1 other INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
3L	10664076	3L_10664076_SNP [dm3] 3L_10670976_SNP [dm6]	G	A	4.377e^-4	0.944	INTRON simj	TF binding site BDTNP1_TFBS_dl
3L	17454739	3L_17454739_SNP [dm3] 3L_17461639_SNP [dm6]	T	A	4.377e^-4	0.944	INTERGENIC
3L	2682633	3L_2682633_SNP [dm3] 3L_2682633_SNP [dm6]	C	T	4.377e^-4	0.944	INTRON Fife
3R	24952947	3R_24952947_SNP [dm3] 3R_29127225_SNP [dm6]	T	C	4.377e^-4	0.944	SYNONYMOUS_CODING CG11880	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24994230	3R_24994230_SNP [dm3] 3R_29168508_SNP [dm6]	T	C	4.377e^-4	0.944	INTRON CG11898
3R	24994362	3R_24994362_DEL [dm3] 3R_29168640_DEL [dm6]	GAAG	G	4.377e^-4	0.944	INTRON CG11898
X	1585195	X_1585195_DEL [dm3] X_1691162_DEL [dm6]	CA	C	4.377e^-4	0.944	DOWNSTREAM b6 INTRON CG32809	TF binding site mE1_TFBS_chinmo
X	16362187	X_16362187_SNP [dm3] X_16468154_SNP [dm6]	T	C	4.377e^-4	0.944	INTRON para	TF binding site mE1_TFBS_HSA
X	16362244	X_16362244_SNP [dm3] X_16468211_SNP [dm6]	C	T	4.377e^-4	0.944	INTRON para
X	2307171	X_2307171_SNP [dm3] X_2413138_SNP [dm6]	T	C	4.377e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	2307172	X_2307172_SNP [dm3] X_2413139_SNP [dm6]	A	C	4.377e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	2307219	X_2307219_SNP [dm3] X_2413186_SNP [dm6]	C	A	4.377e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3952335	X_3952335_SNP [dm3] X_4058302_SNP [dm6]	G	T	4.377e^-4	0.944	INTERGENIC
X	8085358	X_8085358_SNP [dm3] X_8191325_SNP [dm6]	G	C	4.377e^-4	0.944	INTRON sdt
X	8535554	X_8535554_SNP [dm3] X_8641521_SNP [dm6]	A	T	4.377e^-4	0.944	INTRON oc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	8640033	X_8640033_SNP [dm3] X_8746000_SNP [dm6]	C	T	4.377e^-4	0.944	INTERGENIC
X	8640035	X_8640035_SNP [dm3] X_8746002_SNP [dm6]	A	T	4.377e^-4	0.944	INTERGENIC
2L	6336526	2L_6336526_SNP [dm3] 2L_6336526_SNP [dm6]	G	A	4.379e^-4	0.944	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6336532	2L_6336532_SNP [dm3] 2L_6336532_SNP [dm6]	A	G	4.379e^-4	0.944	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6336547	2L_6336547_SNP [dm3] 2L_6336547_SNP [dm6]	G	A	4.379e^-4	0.944	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6336589	2L_6336589_SNP [dm3] 2L_6336589_SNP [dm6]	A	C	4.379e^-4	0.944	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6336613	2L_6336613_SNP [dm3] 2L_6336613_SNP [dm6]	C	T	4.404e^-4	0.944	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21184268	3R_21184268_SNP [dm3] 3R_25358546_SNP [dm6]	T	A	4.596e^-4	0.944	INTRON Fur1 & 1 other
X	19491214	X_19491214_MNP [dm3] X_19597181_MNP [dm6]	TCGCCCC	CAAATTT	4.658e^-4	0.944	UPSTREAM RpS10b INTERGENIC
X	19491221	X_19491221_INS [dm3] X_19597188_INS [dm6]	G	GTAT	4.658e^-4	0.944	UPSTREAM RpS10b INTERGENIC
2L	15081228	2L_15081228_SNP [dm3] 2L_15081228_SNP [dm6]	G	A	4.720e^-4	0.944	INTRON CG15270
3L	10821757	3L_10821757_SNP [dm3] 3L_10828657_SNP [dm6]	T	A	4.871e^-4	0.944	INTERGENIC
3L	10821891	3L_10821891_SNP [dm3] 3L_10828791_SNP [dm6]	T	A	4.871e^-4	0.944	INTERGENIC
3L	12065235	3L_12065235_SNP [dm3] 3L_12072135_SNP [dm6]	G	C	4.871e^-4	0.944	INTRON Sema-5c
3L	12195690	3L_12195690_SNP [dm3] 3L_12202590_SNP [dm6]	T	G	4.871e^-4	0.944	INTRON Adk1
3L	12848556	3L_12848556_SNP [dm3] 3L_12855456_SNP [dm6]	A	G	4.871e^-4	0.944	INTRON Ent3	TF binding site mE1_TFBS_cad
3L	19172101	3L_19172101_SNP [dm3] 3L_19179001_SNP [dm6]	T	C	4.871e^-4	0.944	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	19266371	3L_19266371_SNP [dm3] 3L_19273271_SNP [dm6]	C	T	4.871e^-4	0.944	SYNONYMOUS_CODING CG14085	TF binding site mE1_TFBS_cad
3L	2611721	3L_2611721_SNP [dm3] 3L_2611721_SNP [dm6]	C	A	4.871e^-4	0.944	INTRON Pxn
3L	2651543	3L_2651543_SNP [dm3] 3L_2651543_SNP [dm6]	C	T	4.871e^-4	0.944	SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
3L	2651573	3L_2651573_SNP [dm3] 3L_2651573_SNP [dm6]	C	G	4.871e^-4	0.944	NON_SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
3L	2651650	3L_2651650_DEL [dm3] 3L_2651650_DEL [dm6]	CTC	C	4.871e^-4	0.944	UPSTREAM Snup & 1 other INTRON Aats-pro
3L	2651668	3L_2651668_SNP [dm3] 3L_2651668_SNP [dm6]	G	C	4.871e^-4	0.944	SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
3L	3138314	3L_3138314_SNP [dm3] 3L_3138314_SNP [dm6]	G	C	4.871e^-4	0.944	INTRON CG11537
3L	3138325	3L_3138325_SNP [dm3] 3L_3138325_SNP [dm6]	T	C	4.871e^-4	0.944	INTRON CG11537
3L	3138331	3L_3138331_SNP [dm3] 3L_3138331_SNP [dm6]	G	A	4.871e^-4	0.944	INTRON CG11537
3L	3138332	3L_3138332_SNP [dm3] 3L_3138332_SNP [dm6]	T	A	4.871e^-4	0.944	INTRON CG11537
3L	3138343	3L_3138343_SNP [dm3] 3L_3138343_SNP [dm6]	T	A	4.871e^-4	0.944	INTRON CG11537
3L	3138462	3L_3138462_SNP [dm3] 3L_3138462_SNP [dm6]	C	T	4.871e^-4	0.944	INTRON CG11537
3L	3380750	3L_3380750_SNP [dm3] 3L_3380750_SNP [dm6]	G	A	4.871e^-4	0.944	DOWNSTREAM CG12014 INTERGENIC
3L	721470	3L_721470_SNP [dm3] 3L_721470_SNP [dm6]	A	T	4.871e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7398851	3L_7398851_SNP [dm3] 3L_7405751_SNP [dm6]	G	A	4.871e^-4	0.944	UPSTREAM pncr015:3L INTERGENIC
3L	7398970	3L_7398970_SNP [dm3] 3L_7405870_SNP [dm6]	C	T	4.871e^-4	0.944	UPSTREAM pncr015:3L INTERGENIC
3L	866923	3L_866923_SNP [dm3] 3L_866923_SNP [dm6]	T	C	4.871e^-4	0.944	INTRON CG12502	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	866926	3L_866926_SNP [dm3] 3L_866926_SNP [dm6]	A	C	4.871e^-4	0.944	INTRON CG12502	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9480926	3L_9480926_SNP [dm3] 3L_9487826_SNP [dm6]	A	G	4.871e^-4	0.944	UPSTREAM pall DOWNSTREAM CG32036 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
3R	14020136	3R_14020136_SNP [dm3] 3R_18194414_SNP [dm6]	A	C	4.871e^-4	0.944	UTR_3_PRIME Ssdp DOWNSTREAM Ssdp
3R	14788555	3R_14788555_SNP [dm3] 3R_18962833_SNP [dm6]	C	T	4.871e^-4	0.944	INTRON CG42613 & 1 other
3R	14788579	3R_14788579_SNP [dm3] 3R_18962857_SNP [dm6]	C	G	4.871e^-4	0.944	INTRON CG42613 & 1 other
3R	20366490	3R_20366490_SNP [dm3] 3R_24540768_SNP [dm6]	C	T	4.871e^-4	0.944	SYNONYMOUS_CODING CG5789	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21737992	3R_21737992_SNP [dm3] 3R_25912270_SNP [dm6]	A	C	4.871e^-4	0.944	SYNONYMOUS_CODING CG42235 INTRON CG42235
3R	23212528	3R_23212528_SNP [dm3] 3R_27386806_SNP [dm6]	T	C	4.871e^-4	0.944	INTRON side
3R	24541974	3R_24541974_SNP [dm3] 3R_28716252_SNP [dm6]	C	A	4.871e^-4	0.944	SYNONYMOUS_CODING htt	TF binding site mE1_TFBS_chinmo
3R	24627840	3R_24627840_SNP [dm3] 3R_28802118_SNP [dm6]	G	A	4.871e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24655075	3R_24655075_SNP [dm3] 3R_28829353_SNP [dm6]	A	G	4.871e^-4	0.944	INTRON WASp
3R	24665758	3R_24665758_SNP [dm3] 3R_28840036_SNP [dm6]	G	T	4.871e^-4	0.944	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6851091	3R_6851091_SNP [dm3] 3R_11025369_SNP [dm6]	A	T	4.871e^-4	0.944	INTRON CG34114
3R	856545	3R_856545_SNP [dm3] 3R_5030823_SNP [dm6]	T	A	4.871e^-4	0.944	INTERGENIC
3R	8586341	3R_8586341_SNP [dm3] 3R_12760619_SNP [dm6]	A	C	4.871e^-4	0.944	INTRON beat-Vc
3R	8586446	3R_8586446_SNP [dm3] 3R_12760724_SNP [dm6]	T	G	4.871e^-4	0.944	INTRON beat-Vc
3R	8616136	3R_8616136_SNP [dm3] 3R_12790414_SNP [dm6]	C	T	4.871e^-4	0.944	INTERGENIC
3R	900869	3R_900869_SNP [dm3] 3R_5075147_SNP [dm6]	T	C	4.871e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	916585	3R_916585_SNP [dm3] 3R_5090863_SNP [dm6]	C	G	4.871e^-4	0.944	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
3R	928272	3R_928272_SNP [dm3] 3R_5102550_SNP [dm6]	A	T	4.871e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	19490635	X_19490635_SNP [dm3] X_19596602_SNP [dm6]	A	T	4.871e^-4	0.944	INTERGENIC	transposable element FlyBase
X	19493229	X_19493229_SNP [dm3] X_19599196_SNP [dm6]	C	T	4.871e^-4	0.944	UTR_3_PRIME RpS10b DOWNSTREAM CG14220 & 1 other
3L	17463034	3L_17463034_SNP [dm3] 3L_17469934_SNP [dm6]	T	C	4.883e^-4	0.944	UPSTREAM CG7589 INTERGENIC
3L	4791298	3L_4791298_SNP [dm3] 3L_4791298_SNP [dm6]	C	T	4.883e^-4	0.944	SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo
3L	8206285	3L_8206285_SNP [dm3] 3L_8213185_SNP [dm6]	A	T	4.883e^-4	0.944	SYNONYMOUS_CODING CG8006	TF binding site mE1_TFBS_cad
3R	11478105	3R_11478105_SNP [dm3] 3R_15652383_SNP [dm6]	C	A	4.883e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_sens
3R	12117338	3R_12117338_SNP [dm3] 3R_16291616_SNP [dm6]	A	T	4.883e^-4	0.944	INTRON gish	TF binding site mE1_TFBS_cad
3R	13799048	3R_13799048_SNP [dm3] 3R_17973326_SNP [dm6]	T	A	4.883e^-4	0.944	INTRON cpo
3R	13893680	3R_13893680_SNP [dm3] 3R_18067958_SNP [dm6]	A	C	4.883e^-4	0.944	INTERGENIC
3R	16762461	3R_16762461_SNP [dm3] 3R_20936739_SNP [dm6]	G	C	4.883e^-4	0.944	INTRON CG31191
3R	16891400	3R_16891400_SNP [dm3] 3R_21065678_SNP [dm6]	T	G	4.883e^-4	0.944	UPSTREAM AnxB9 INTRON AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	17146296	3R_17146296_SNP [dm3] 3R_21320574_SNP [dm6]	G	A	4.883e^-4	0.944	UTR_3_PRIME CG16791 DOWNSTREAM CG16791
3R	19561934	3R_19561934_SNP [dm3] 3R_23736212_SNP [dm6]	T	A	4.883e^-4	0.944	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	20833903	3R_20833903_DEL [dm3] 3R_25008181_DEL [dm6]	ACTAACTGA	A	4.883e^-4	0.944	INTRON tnc
3R	26363736	3R_26363736_SNP [dm3] 3R_30538014_SNP [dm6]	T	G	4.883e^-4	0.944	UPSTREAM tmod INTRON tmod
3R	799174	3R_799174_SNP [dm3] 3R_4973452_SNP [dm6]	T	C	4.883e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
3R	8080148	3R_8080148_SNP [dm3] 3R_12254426_SNP [dm6]	T	C	4.883e^-4	0.944	SYNONYMOUS_CODING CG3942	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	8080190	3R_8080190_SNP [dm3] 3R_12254468_SNP [dm6]	T	G	4.883e^-4	0.944	SYNONYMOUS_CODING CG3942	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	813241	3R_813241_SNP [dm3] 3R_4987519_SNP [dm6]	G	A	4.883e^-4	0.944	INTRON CG2022	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
3R	813279	3R_813279_SNP [dm3] 3R_4987557_SNP [dm6]	C	T	4.883e^-4	0.944	INTRON CG2022	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
3R	815898	3R_815898_SNP [dm3] 3R_4990176_SNP [dm6]	T	G	4.883e^-4	0.944	INTRON CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	8584247	3R_8584247_SNP [dm3] 3R_12758525_SNP [dm6]	C	T	4.883e^-4	0.944	INTRON beat-Vc
3R	8617688	3R_8617688_SNP [dm3] 3R_12791966_SNP [dm6]	A	G	4.883e^-4	0.944	INTERGENIC
3R	8618204	3R_8618204_SNP [dm3] 3R_12792482_SNP [dm6]	G	A	4.883e^-4	0.944	INTERGENIC
3R	8863921	3R_8863921_SNP [dm3] 3R_13038199_SNP [dm6]	T	C	4.883e^-4	0.944	UPSTREAM CG11668 DOWNSTREAM ry INTERGENIC
3R	9948317	3R_9948317_INS [dm3] 3R_14122595_INS [dm6]	T	TAATT	4.883e^-4	0.944	UPSTREAM twf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19484520	X_19484520_SNP [dm3] X_19590487_SNP [dm6]	C	T	4.883e^-4	0.944	UPSTREAM CG14219 INTERGENIC
X	19484535	X_19484535_SNP [dm3] X_19590502_SNP [dm6]	A	T	4.883e^-4	0.944	UPSTREAM CG14219 INTERGENIC
2R	16851353	2R_16851353_SNP [dm3] 2R_20963848_SNP [dm6]	G	A	4.970e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4462607	2L_4462607_DEL [dm3] 2L_4462607_DEL [dm6]	AGGGTGC	A	5.039e^-4	0.944	UPSTREAM CG15436 DOWNSTREAM CG15435 INTRON CG15443	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	21916487	2L_21916487_SNP [dm3] 2L_21916487_SNP [dm6]	T	A	5.047e^-4	0.944	NON_SYNONYMOUS_CODING CG11634
2R	6684573	2R_6684573_SNP [dm3] 2R_10797068_SNP [dm6]	T	A	5.090e^-4	0.944	INTRON CG33144
2R	6684591	2R_6684591_DEL [dm3] 2R_10797086_DEL [dm6]	TTTATA	T	5.090e^-4	0.944	INTRON CG33144
3L	17816835	3L_17816835_SNP [dm3] 3L_17823735_SNP [dm6]	G	C	5.090e^-4	0.944	UPSTREAM Ir75c INTRON Grd
3L	2683676	3L_2683676_SNP [dm3] 3L_2683676_SNP [dm6]	A	G	5.090e^-4	0.944	INTRON Fife
2R	15841735	2R_15841735_SNP [dm3] 2R_19954230_SNP [dm6]	C	T	5.160e^-4	0.944	SYNONYMOUS_CODING CG44622
2L	16795414	2L_16795414_SNP [dm3] 2L_16795414_SNP [dm6]	C	T	5.221e^-4	0.944	SYNONYMOUS_CODING Ugt36Ba
2R	11653566	2R_11653566_SNP [dm3] 2R_15766061_SNP [dm6]	T	G	5.231e^-4	0.944	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11844909	2R_11844909_SNP [dm3] 2R_15957404_SNP [dm6]	A	G	5.231e^-4	0.944	UPSTREAM Strn-Mlck DOWNSTREAM CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	11844926	2R_11844926_SNP [dm3] 2R_15957421_SNP [dm6]	T	C	5.231e^-4	0.944	UPSTREAM Strn-Mlck DOWNSTREAM CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	16500036	2R_16500036_SNP [dm3] 2R_20612531_SNP [dm6]	A	T	5.231e^-4	0.944	INTRON Hil
2R	19809455	2R_19809455_SNP [dm3] 2R_23921932_SNP [dm6]	A	G	5.231e^-4	0.944	INTRON kcc
2R	19809464	2R_19809464_SNP [dm3] 2R_23921941_SNP [dm6]	A	T	5.231e^-4	0.944	INTRON kcc
2R	5444062	2R_5444062_SNP [dm3] 2R_9556557_SNP [dm6]	T	G	5.231e^-4	0.944	INTERGENIC
3L	4977346	3L_4977346_SNP [dm3] 3L_4977346_SNP [dm6]	G	A	5.231e^-4	0.944	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	4977453	3L_4977453_SNP [dm3] 3L_4977453_SNP [dm6]	G	A	5.231e^-4	0.944	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	4978489	3L_4978489_SNP [dm3] 3L_4978489_SNP [dm6]	A	G	5.231e^-4	0.944	INTRON Con
X	8090484	X_8090484_SNP [dm3] X_8196451_SNP [dm6]	C	G	5.231e^-4	0.944	INTRON sdt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	8090485	X_8090485_SNP [dm3] X_8196452_SNP [dm6]	A	G	5.231e^-4	0.944	INTRON sdt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	4438841	2R_4438841_SNP [dm3] 2R_8551336_SNP [dm6]	T	A	5.256e^-4	0.944	DOWNSTREAM CG12780 INTERGENIC
2L	13028793	2L_13028793_SNP [dm3] 2L_13028793_SNP [dm6]	T	A	5.264e^-4	0.944	INTRON CG9932	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19973827	2R_19973827_SNP [dm3] 2R_24086304_SNP [dm6]	C	T	5.271e^-4	0.944	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19973832	2R_19973832_SNP [dm3] 2R_24086309_SNP [dm6]	C	T	5.271e^-4	0.944	UPSTREAM snama DOWNSTREAM CG16786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	19694461	3R_19694461_SNP [dm3] 3R_23868739_SNP [dm6]	A	G	5.323e^-4	0.944	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20364858	3R_20364858_SNP [dm3] 3R_24539136_SNP [dm6]	T	C	5.323e^-4	0.944	SYNONYMOUS_CODING CG5789	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20425093	3R_20425093_SNP [dm3] 3R_24599371_SNP [dm6]	A	T	5.323e^-4	0.944	INTRON mld	TF binding site mE1_TFBS_HSA
3R	856548	3R_856548_SNP [dm3] 3R_5030826_SNP [dm6]	G	A	5.323e^-4	0.944	INTERGENIC
3R	887974	3R_887974_SNP [dm3] 3R_5062252_SNP [dm6]	A	G	5.323e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19491089	X_19491089_SNP [dm3] X_19597056_SNP [dm6]	G	T	5.323e^-4	0.944	UPSTREAM RpS10b INTERGENIC
X	19491091	X_19491091_SNP [dm3] X_19597058_SNP [dm6]	G	T	5.323e^-4	0.944	UPSTREAM RpS10b INTERGENIC
X	19491093	X_19491093_SNP [dm3] X_19597060_SNP [dm6]	G	A	5.323e^-4	0.944	UPSTREAM RpS10b INTERGENIC
X	19491094	X_19491094_SNP [dm3] X_19597061_SNP [dm6]	C	G	5.323e^-4	0.944	UPSTREAM RpS10b INTERGENIC
X	19491105	X_19491105_INS [dm3] X_19597072_INS [dm6]	T	TTATG	5.323e^-4	0.944	UPSTREAM RpS10b INTERGENIC
X	19491110	X_19491110_SNP [dm3] X_19597077_SNP [dm6]	G	A	5.323e^-4	0.944	UPSTREAM RpS10b INTERGENIC
2R	1368883	2R_1368883_INS [dm3] 2R_5481378_INS [dm6]	T	TTAAGGAGGGCAAAT...	5.336e^-4	0.944	INTRON CG30440	transposable element FlyBase
2R	16875512	2R_16875512_SNP [dm3] 2R_20988007_SNP [dm6]	A	G	5.336e^-4	0.944	SYNONYMOUS_CODING CG3216	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	22627467	2L_22627467_SNP [dm3] 2L_22734735_SNP [dm6]	G	A	5.514e^-4	0.944	INTRON CG40006
2R	13419888	2R_13419888_SNP [dm3] 2R_17532383_SNP [dm6]	T	C	5.514e^-4	0.944	INTRON Patronin	TF binding site mE1_TFBS_sens
3L	1252949	3L_1252949_SNP [dm3] 3L_1252949_SNP [dm6]	G	A	5.514e^-4	0.944	SYNONYMOUS_CODING CG9130 START_GAINED CG9133 UTR_5_PRIME CG9133 UPSTREAM CG9133	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11659550	2R_11659550_SNP [dm3] 2R_15772045_SNP [dm6]	T	G	5.567e^-4	0.944	INTRON Zasp52
2R	7952237	2R_7952237_SNP [dm3] 2R_12064732_SNP [dm6]	G	A	5.567e^-4	0.944	UTR_3_PRIME CG8888
3L	17977809	3L_17977809_SNP [dm3] 3L_17984709_SNP [dm6]	C	A	5.567e^-4	0.944	INTRON Eip75B
3L	413912	3L_413912_SNP [dm3] 3L_413912_SNP [dm6]	C	T	5.567e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	413923	3L_413923_SNP [dm3] 3L_413923_SNP [dm6]	A	G	5.567e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	8031635	3L_8031635_SNP [dm3] 3L_8038535_SNP [dm6]	T	C	5.569e^-4	0.944	INTRON nmo	TF binding site mE1_TFBS_inv
2L	16790459	2L_16790459_SNP [dm3] 2L_16790459_SNP [dm6]	C	T	5.731e^-4	0.944	SYNONYMOUS_CODING Cyt-b5-r
2L	16794997	2L_16794997_SNP [dm3] 2L_16794997_SNP [dm6]	T	C	5.731e^-4	0.944	SYNONYMOUS_CODING Ugt36Ba	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2R	9515672	2R_9515672_SNP [dm3] 2R_13628167_SNP [dm6]	G	C	5.731e^-4	0.944	INTRON fas
3L	1929600	3L_1929600_SNP [dm3] 3L_1929600_SNP [dm6]	T	C	5.731e^-4	0.944	INTRON Dbx
3L	1929663	3L_1929663_SNP [dm3] 3L_1929663_SNP [dm6]	T	C	5.731e^-4	0.944	INTRON Dbx
3L	1929701	3L_1929701_SNP [dm3] 3L_1929701_SNP [dm6]	A	T	5.731e^-4	0.944	INTRON Dbx
3L	1929741	3L_1929741_SNP [dm3] 3L_1929741_SNP [dm6]	G	A	5.731e^-4	0.944	INTRON Dbx
X	16832597	X_16832597_SNP [dm3] X_16938564_SNP [dm6]	A	T	5.731e^-4	0.944	UTR_3_PRIME wus DOWNSTREAM CG4928
2R	11451441	2R_11451441_SNP [dm3] 2R_15563936_SNP [dm6]	A	G	5.776e^-4	0.944	SYNONYMOUS_CODING CG8195	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18122854	2R_18122854_SNP [dm3] 2R_22235349_SNP [dm6]	G	A	5.776e^-4	0.944	DOWNSTREAM CR44755 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8617731	3R_8617731_SNP [dm3] 3R_12792009_SNP [dm6]	A	T	5.853e^-4	0.944	INTERGENIC
2L	2004997	2L_2004997_SNP [dm3] 2L_2004997_SNP [dm6]	G	A	6.134e^-4	0.944	INTRON CG33543
2R	18083703	2R_18083703_SNP [dm3] 2R_22196198_SNP [dm6]	T	G	6.134e^-4	0.944	INTRON Swim
X	3967788	X_3967788_SNP [dm3] X_4073755_SNP [dm6]	G	A	6.205e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14894805	2L_14894805_SNP [dm3] 2L_14894805_SNP [dm6]	T	C	6.252e^-4	0.944	INTERGENIC
2R	10416114	2R_10416114_SNP [dm3] 2R_14528609_SNP [dm6]	G	A	6.284e^-4	0.944	INTRON ttv
2L	19358862	2L_19358862_SNP [dm3] 2L_19358862_SNP [dm6]	T	G	6.325e^-4	0.944	INTRON dnt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	4909371	2R_4909371_SNP [dm3] 2R_9021866_SNP [dm6]	A	G	6.325e^-4	0.944	SPLICE_SITE_REGION CG8170 INTRON CG8170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10986730	2R_10986730_SNP [dm3] 2R_15099225_SNP [dm6]	A	T	6.350e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	10986742	2R_10986742_SNP [dm3] 2R_15099237_SNP [dm6]	G	A	6.350e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	10986837	2R_10986837_SNP [dm3] 2R_15099332_SNP [dm6]	T	C	6.350e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	17614939	2R_17614939_SNP [dm3] 2R_21727434_SNP [dm6]	A	T	6.350e^-4	0.944	DOWNSTREAM CR44750 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18340331	2R_18340331_SNP [dm3] 2R_22452826_SNP [dm6]	T	C	6.350e^-4	0.944	INTERGENIC
2R	8352098	2R_8352098_SNP [dm3] 2R_12464593_SNP [dm6]	C	T	6.350e^-4	0.944	SYNONYMOUS_CODING Lac	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8341020	3R_8341020_SNP [dm3] 3R_12515298_SNP [dm6]	G	A	6.350e^-4	0.944	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6508749	2R_6508749_SNP [dm3] 2R_10621244_SNP [dm6]	C	T	6.368e^-4	0.944	UPSTREAM CG11883 INTRON CG11883
2R	10986721	2R_10986721_SNP [dm3] 2R_15099216_SNP [dm6]	T	G	6.424e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	16242489	2R_16242489_SNP [dm3] 2R_20354984_SNP [dm6]	C	T	6.424e^-4	0.944	NON_SYNONYMOUS_CODING CG11192	TF binding site mE1_TFBS_cad
3L	10403795	3L_10403795_DEL [dm3] 3L_10410695_DEL [dm6]	CT	C	6.424e^-4	0.944	DOWNSTREAM CR44543 INTERGENIC	TF binding site mE1_TFBS_inv
2R	14743486	2R_14743486_SNP [dm3] 2R_18855981_SNP [dm6]	G	A	6.441e^-4	0.944	SYNONYMOUS_CODING Jheh2 UPSTREAM Jheh1
2R	16288841	2R_16288841_SNP [dm3] 2R_20401336_SNP [dm6]	G	T	6.441e^-4	0.944	INTERGENIC
2R	17000721	2R_17000721_SNP [dm3] 2R_21113216_SNP [dm6]	G	C	6.441e^-4	0.944	INTRON ktub
2R	17799563	2R_17799563_SNP [dm3] 2R_21912058_SNP [dm6]	G	T	6.441e^-4	0.944	INTRON Fili
2R	17799564	2R_17799564_SNP [dm3] 2R_21912059_SNP [dm6]	A	T	6.441e^-4	0.944	INTRON Fili
2R	17799576	2R_17799576_SNP [dm3] 2R_21912071_SNP [dm6]	C	A	6.441e^-4	0.944	INTRON Fili
2R	17940258	2R_17940258_SNP [dm3] 2R_22052753_SNP [dm6]	T	A	6.441e^-4	0.944	INTERGENIC
2R	18289952	2R_18289952_SNP [dm3] 2R_22402447_SNP [dm6]	T	C	6.441e^-4	0.944	UPSTREAM babos DOWNSTREAM CR44760 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18289982	2R_18289982_SNP [dm3] 2R_22402477_SNP [dm6]	C	A	6.441e^-4	0.944	UPSTREAM babos DOWNSTREAM CR44760 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20918755	2R_20918755_SNP [dm3] 2R_25031232_SNP [dm6]	T	C	6.441e^-4	0.944	UTR_3_PRIME uzip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6060363	2R_6060363_INS [dm3] 2R_10172858_INS [dm6]	T	TTCAGACCAACAC...	6.441e^-4	0.944	INTRON KCNQ
2R	6060385	2R_6060385_SNP [dm3] 2R_10172880_SNP [dm6]	T	C	6.441e^-4	0.944	INTRON KCNQ
2R	6060415	2R_6060415_SNP [dm3] 2R_10172910_SNP [dm6]	T	A	6.441e^-4	0.944	INTRON KCNQ
2R	6060416	2R_6060416_SNP [dm3] 2R_10172911_SNP [dm6]	A	C	6.441e^-4	0.944	INTRON KCNQ
2R	6060440	2R_6060440_SNP [dm3] 2R_10172935_SNP [dm6]	G	T	6.441e^-4	0.944	INTRON KCNQ
2R	6060455	2R_6060455_DEL [dm3] 2R_10172950_DEL [dm6]	TAACTAATCATTTTCAGCT...	T	6.441e^-4	0.944	INTRON KCNQ
2R	6098451	2R_6098451_SNP [dm3] 2R_10210946_SNP [dm6]	A	G	6.441e^-4	0.944	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	6099021	2R_6099021_SNP [dm3] 2R_10211516_SNP [dm6]	A	T	6.441e^-4	0.944	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	6099236	2R_6099236_SNP [dm3] 2R_10211731_SNP [dm6]	A	G	6.441e^-4	0.944	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	6099307	2R_6099307_SNP [dm3] 2R_10211802_SNP [dm6]	G	A	6.441e^-4	0.944	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	6099373	2R_6099373_SNP [dm3] 2R_10211868_SNP [dm6]	C	G	6.441e^-4	0.944	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	6249538	2R_6249538_SNP [dm3] 2R_10362033_SNP [dm6]	G	A	6.441e^-4	0.944	UPSTREAM Gr47a INTRON CG42732	TF binding site mE1_TFBS_inv
2R	6531483	2R_6531483_SNP [dm3] 2R_10643978_SNP [dm6]	G	A	6.441e^-4	0.944	INTRON Git	TF binding site mE1_TFBS_HSA
2R	6531497	2R_6531497_SNP [dm3] 2R_10643992_SNP [dm6]	C	T	6.441e^-4	0.944	INTRON Git	TF binding site mE1_TFBS_HSA
2R	7257141	2R_7257141_SNP [dm3] 2R_11369636_SNP [dm6]	G	A	6.441e^-4	0.944	SYNONYMOUS_CODING CG13204 DOWNSTREAM Tapdelta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	7266143	2R_7266143_SNP [dm3] 2R_11378638_SNP [dm6]	A	C	6.441e^-4	0.944	INTRON Tsp47F
2R	802575	2R_802575_SNP [dm3] 2R_4915070_SNP [dm6]	T	A	6.441e^-4	0.944	INTERGENIC
2R	836521	2R_836521_SNP [dm3] 2R_4949016_SNP [dm6]	A	T	6.441e^-4	0.944	INTRON Ir41a
2R	836523	2R_836523_SNP [dm3] 2R_4949018_SNP [dm6]	C	T	6.441e^-4	0.944	INTRON Ir41a
2R	8831517	2R_8831517_SNP [dm3] 2R_12944012_SNP [dm6]	C	T	6.441e^-4	0.944	SYNONYMOUS_CODING Mdr49	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10403988	3L_10403988_DEL [dm3] 3L_10410888_DEL [dm6]	TGTT	AAA	6.441e^-4	0.944	EXON CR44543
3L	10404002	3L_10404002_DEL [dm3] 3L_10410902_DEL [dm6]	TTGT	T	6.441e^-4	0.944	EXON CR44543
3L	10404248	3L_10404248_SNP [dm3] 3L_10411148_SNP [dm6]	C	A	6.441e^-4	0.944	DOWNSTREAM CR43990 EXON CR44543
3L	10715462	3L_10715462_SNP [dm3] 3L_10722362_SNP [dm6]	T	C	6.441e^-4	0.944	INTERGENIC
3L	10946183	3L_10946183_DEL [dm3] 3L_10953083_DEL [dm6]	AG	A	6.441e^-4	0.944	INTERGENIC
3L	10946195	3L_10946195_SNP [dm3] 3L_10953095_SNP [dm6]	G	C	6.441e^-4	0.944	INTERGENIC
3L	11063169	3L_11063169_SNP [dm3] 3L_11070069_SNP [dm6]	T	G	6.441e^-4	0.944	UPSTREAM Mocs1 & 1 other INTERGENIC
3L	11063172	3L_11063172_SNP [dm3] 3L_11070072_SNP [dm6]	A	T	6.441e^-4	0.944	UPSTREAM Mocs1 & 1 other INTERGENIC
3L	11063176	3L_11063176_SNP [dm3] 3L_11070076_SNP [dm6]	C	T	6.441e^-4	0.944	UPSTREAM Mocs1 & 1 other INTERGENIC
3L	14076952	3L_14076952_SNP [dm3] 3L_14083852_SNP [dm6]	C	G	6.441e^-4	0.944	NON_SYNONYMOUS_CODING CG8100 DOWNSTREAM btl
3L	2343563	3L_2343563_SNP [dm3] 3L_2343563_SNP [dm6]	T	A	6.441e^-4	0.944	SYNONYMOUS_CODING MsR1	TF binding site mE1_TFBS_chinmo
X	13404611	X_13404611_SNP [dm3] X_13510578_SNP [dm6]	T	C	6.441e^-4	0.944	INTRON Neto
X	13773621	X_13773621_DEL [dm3] X_13879588_DEL [dm6]	AAAGCAAAAAGTAAAAGA...	A	6.441e^-4	0.944	INTRON mamo
X	13773671	X_13773671_INS [dm3] X_13879638_INS [dm6]	T	TC	6.441e^-4	0.944	INTRON mamo
X	13773726	X_13773726_SNP [dm3] X_13879693_SNP [dm6]	T	C	6.441e^-4	0.944	INTRON mamo
X	13773737	X_13773737_SNP [dm3] X_13879704_SNP [dm6]	T	C	6.441e^-4	0.944	INTRON mamo
X	14876239	X_14876239_DEL [dm3] X_14982206_DEL [dm6]	TT	T	6.441e^-4	0.944	INTRON eag
X	14876248	X_14876248_SNP [dm3] X_14982215_SNP [dm6]	C	T	6.441e^-4	0.944	INTRON eag
X	16127968	X_16127968_SNP [dm3] X_16233935_SNP [dm6]	G	C	6.441e^-4	0.944	INTERGENIC
X	17399772	X_17399772_SNP [dm3] X_17505739_SNP [dm6]	A	T	6.441e^-4	0.944	INTRON CG43658	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	17399774	X_17399774_SNP [dm3] X_17505741_SNP [dm6]	A	C	6.441e^-4	0.944	INTRON CG43658	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	17399782	X_17399782_SNP [dm3] X_17505749_SNP [dm6]	T	C	6.441e^-4	0.944	INTRON CG43658	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	17399852	X_17399852_INS [dm3] X_17505819_INS [dm6]	A	AG	6.441e^-4	0.944	INTRON CG43658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
X	17399863	X_17399863_SNP [dm3] X_17505830_SNP [dm6]	T	G	6.441e^-4	0.944	INTRON CG43658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
X	17399871	X_17399871_SNP [dm3] X_17505838_SNP [dm6]	C	T	6.441e^-4	0.944	INTRON CG43658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
X	17399941	X_17399941_INS [dm3] X_17505908_INS [dm6]	A	AA	6.441e^-4	0.944	INTRON CG43658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
X	3378534	X_3378534_SNP [dm3] X_3484501_SNP [dm6]	A	G	6.441e^-4	0.944	UTR_3_PRIME CG10802 DOWNSTREAM CG14270 INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	3378638	X_3378638_SNP [dm3] X_3484605_SNP [dm6]	C	A	6.441e^-4	0.944	UTR_3_PRIME CG14270 DOWNSTREAM CG10802 INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	6412808	X_6412808_SNP [dm3] X_6518775_SNP [dm6]	A	G	6.441e^-4	0.944	INTRON CG42340
X	6412887	X_6412887_SNP [dm3] X_6518854_SNP [dm6]	C	A	6.441e^-4	0.944	INTRON CG42340
X	6413011	X_6413011_SNP [dm3] X_6518978_SNP [dm6]	A	G	6.441e^-4	0.944	INTRON CG42340
X	9462622	X_9462622_SNP [dm3] X_9568589_SNP [dm6]	C	A	6.441e^-4	0.944	INTRON Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9462628	X_9462628_SNP [dm3] X_9568595_SNP [dm6]	G	A	6.441e^-4	0.944	INTRON Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9462638	X_9462638_SNP [dm3] X_9568605_SNP [dm6]	G	T	6.441e^-4	0.944	INTRON Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6548615	2L_6548615_SNP [dm3] 2L_6548615_SNP [dm6]	T	C	6.549e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6548634	2L_6548634_SNP [dm3] 2L_6548634_SNP [dm6]	T	G	6.549e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	4941297	2R_4941297_SNP [dm3] 2R_9053792_SNP [dm6]	A	T	6.549e^-4	0.944	INTRON CG13743
3L	1947946	3L_1947946_SNP [dm3] 3L_1947946_SNP [dm6]	G	A	6.698e^-4	0.944	SYNONYMOUS_CODING Cnb UPSTREAM mu2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19881875	2L_19881875_SNP [dm3] 2L_19881875_SNP [dm6]	T	A	6.769e^-4	0.944	INTRON sick
2L	3503602	2L_3503602_SNP [dm3] 2L_3503602_SNP [dm6]	G	T	6.806e^-4	0.944	SYNONYMOUS_CODING tim INTRON tim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2720973	2L_2720973_SNP [dm3] 2L_2720973_SNP [dm6]	A	G	6.902e^-4	0.944	INTERGENIC
2L	590447	2L_590447_SNP [dm3] 2L_590447_SNP [dm6]	T	A	6.902e^-4	0.944	INTRON Gsc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	590485	2L_590485_SNP [dm3] 2L_590485_SNP [dm6]	A	G	6.902e^-4	0.944	INTRON Gsc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	590487	2L_590487_SNP [dm3] 2L_590487_SNP [dm6]	G	C	6.902e^-4	0.944	INTRON Gsc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	590517	2L_590517_SNP [dm3] 2L_590517_SNP [dm6]	G	A	6.902e^-4	0.944	INTRON Gsc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	6350100	2L_6350100_SNP [dm3] 2L_6350100_SNP [dm6]	G	A	6.902e^-4	0.944	NON_SYNONYMOUS_CODING CG9498	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	1369052	2R_1369052_SNP [dm3] 2R_5481547_SNP [dm6]	A	C	6.902e^-4	0.944	INTRON CG30440	transposable element FlyBase
2R	1369138	2R_1369138_SNP [dm3] 2R_5481633_SNP [dm6]	C	T	6.902e^-4	0.944	INTRON CG30440	transposable element FlyBase
2R	1595616	2R_1595616_SNP [dm3] 2R_5708111_SNP [dm6]	A	G	6.902e^-4	0.944	INTRON ap	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
2R	4150266	2R_4150266_SNP [dm3] 2R_8262761_SNP [dm6]	T	A	6.902e^-4	0.944	UTR_3_PRIME CG12126 DOWNSTREAM CG30376
2R	6099136	2R_6099136_SNP [dm3] 2R_10211631_SNP [dm6]	A	T	6.902e^-4	0.944	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	6871149	2R_6871149_SNP [dm3] 2R_10983644_SNP [dm6]	A	T	6.908e^-4	0.944	INTRON luna
2R	9444999	2R_9444999_SNP [dm3] 2R_13557494_SNP [dm6]	T	C	6.930e^-4	0.944	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	1700442	2R_1700442_SNP [dm3] 2R_5812937_SNP [dm6]	C	A	7.004e^-4	0.944	INTRON dpr12	TF binding site mE1_TFBS_chinmo
2R	14986502	2R_14986502_DEL [dm3] 2R_19098997_DEL [dm6]	GG	G	7.028e^-4	0.944	INTRON 5-HT1A
3R	24725873	3R_24725873_DEL [dm3] 3R_28900151_DEL [dm6]	AGCTT	G	7.034e^-4	0.944	INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11589142	2R_11589142_SNP [dm3] 2R_15701637_SNP [dm6]	A	T	7.249e^-4	0.944	SYNONYMOUS_CODING CG30080 UTR_5_PRIME CG42662	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6462266	3L_6462266_SNP [dm3] 3L_6469166_SNP [dm6]	T	C	7.249e^-4	0.944	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	10632165	X_10632165_SNP [dm3] X_10738132_SNP [dm6]	A	G	7.351e^-4	0.944	INTRON CG32676	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9103776	2L_9103776_SNP [dm3] 2L_9103776_SNP [dm6]	C	T	7.424e^-4	0.944	INTERGENIC
2L	769842	2L_769842_SNP [dm3] 2L_769842_SNP [dm6]	T	C	7.481e^-4	0.944	INTERGENIC
2L	769871	2L_769871_SNP [dm3] 2L_769871_SNP [dm6]	T	G	7.481e^-4	0.944	INTERGENIC
2L	769872	2L_769872_SNP [dm3] 2L_769872_SNP [dm6]	T	A	7.481e^-4	0.944	INTERGENIC
2L	769876	2L_769876_SNP [dm3] 2L_769876_SNP [dm6]	T	C	7.481e^-4	0.944	INTERGENIC
3R	27276975	3R_27276975_SNP [dm3] 3R_31451253_SNP [dm6]	T	A	7.491e^-4	0.944	INTRON Gprk2
X	10762170	X_10762170_DEL [dm3] X_10868137_DEL [dm6]	TT	T	7.509e^-4	0.944	INTERGENIC
X	6735047	X_6735047_SNP [dm3] X_6841014_SNP [dm6]	C	T	7.509e^-4	0.944	INTRON CG14435
2R	12023682	2R_12023682_SNP [dm3] 2R_16136177_SNP [dm6]	A	G	7.642e^-4	0.944	INTRON spin
2R	12023687	2R_12023687_SNP [dm3] 2R_16136182_SNP [dm6]	G	C	7.642e^-4	0.944	SPLICE_SITE_REGION spin INTRON spin
2R	12023886	2R_12023886_SNP [dm3] 2R_16136381_SNP [dm6]	C	T	7.642e^-4	0.944	INTRON spin
2R	12024031	2R_12024031_SNP [dm3] 2R_16136526_SNP [dm6]	T	C	7.642e^-4	0.944	SYNONYMOUS_CODING spin UTR_3_PRIME spin
2R	16298256	2R_16298256_SNP [dm3] 2R_20410751_SNP [dm6]	C	T	7.642e^-4	0.944	INTERGENIC
2R	7201290	2R_7201290_SNP [dm3] 2R_11313785_SNP [dm6]	C	T	7.642e^-4	0.944	SYNONYMOUS_CODING nompA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7201293	2R_7201293_SNP [dm3] 2R_11313788_SNP [dm6]	G	A	7.642e^-4	0.944	SYNONYMOUS_CODING nompA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4582238	3L_4582238_INS [dm3] 3L_4582238_INS [dm6]	A	AA	7.642e^-4	0.944	INTRON CG42540	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21379768	X_21379768_SNP [dm3] X_21508741_SNP [dm6]	A	C	7.642e^-4	0.944	INTRON CR45082
X	21390717	X_21390717_SNP [dm3] X_21519690_SNP [dm6]	T	C	7.642e^-4	0.944	UPSTREAM Cyp6t1 INTRON CR45082
X	21390728	X_21390728_SNP [dm3] X_21519701_SNP [dm6]	C	T	7.642e^-4	0.944	UPSTREAM Cyp6t1 INTRON CR45082
X	21391108	X_21391108_DEL [dm3] X_21520081_DEL [dm6]	ACTTCTAACA	A	7.642e^-4	0.944	UPSTREAM Cyp6t1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
X	21391130	X_21391130_SNP [dm3] X_21520103_SNP [dm6]	A	G	7.642e^-4	0.944	UPSTREAM Cyp6t1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
X	21391150	X_21391150_SNP [dm3] X_21520123_SNP [dm6]	A	G	7.642e^-4	0.944	UPSTREAM Cyp6t1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn transposable element FlyBase
X	21391192	X_21391192_SNP [dm3] X_21520165_SNP [dm6]	A	T	7.642e^-4	0.944	UPSTREAM Cyp6t1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn transposable element FlyBase
X	21391256	X_21391256_SNP [dm3] X_21520229_SNP [dm6]	G	T	7.642e^-4	0.944	UPSTREAM CR45082 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn transposable element FlyBase
X	21391267	X_21391267_INS [dm3] X_21520240_INS [dm6]	A	AA	7.642e^-4	0.944	UPSTREAM CR45082 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn transposable element FlyBase
X	21391280	X_21391280_SNP [dm3] X_21520253_SNP [dm6]	A	G	7.642e^-4	0.944	UPSTREAM CR45082 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn transposable element FlyBase
X	8018253	X_8018253_SNP [dm3] X_8124220_SNP [dm6]	T	C	7.642e^-4	0.944	INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9278270	3L_9278270_SNP [dm3] 3L_9285170_SNP [dm6]	T	G	7.660e^-4	0.944	INTRON GluRIB
3R	931033	3R_931033_SNP [dm3] 3R_5105311_SNP [dm6]	T	A	7.660e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11291854	2R_11291854_DEL [dm3] 2R_15404349_DEL [dm6]	TTTCGCCACGCT...	T	7.667e^-4	0.944	UPSTREAM CR45020 INTRON CG43729
2R	18124891	2R_18124891_DEL [dm3] 2R_22237386_DEL [dm6]	CAGCCC	C	7.667e^-4	0.944	UPSTREAM CR44755 INTERGENIC	TF binding site mE1_TFBS_sens
3R	27276529	3R_27276529_SNP [dm3] 3R_31450807_SNP [dm6]	C	T	7.667e^-4	0.944	INTRON Gprk2
3R	27281308	3R_27281308_SNP [dm3] 3R_31455586_SNP [dm6]	C	T	7.667e^-4	0.944	SYNONYMOUS_CODING Gprk2	TF binding site mE1_TFBS_cad
2R	12023639	2R_12023639_SNP [dm3] 2R_16136134_SNP [dm6]	A	T	7.807e^-4	0.944	INTRON spin
2R	12829892	2R_12829892_SNP [dm3] 2R_16942387_SNP [dm6]	A	G	7.807e^-4	0.944	SYNONYMOUS_CODING Pkc53E
2R	5601276	2R_5601276_SNP [dm3] 2R_9713771_SNP [dm6]	T	A	7.807e^-4	0.944	INTRON dap	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
2R	6531608	2R_6531608_SNP [dm3] 2R_10644103_SNP [dm6]	T	A	7.807e^-4	0.944	INTRON Git	TF binding site mE1_TFBS_HSA
2R	6531617	2R_6531617_DEL [dm3] 2R_10644112_DEL [dm6]	TTAGACTGAAGACAACTTAA...	T	7.807e^-4	0.944	INTRON Git	TF binding site mE1_TFBS_HSA
2R	6531649	2R_6531649_SNP [dm3] 2R_10644144_SNP [dm6]	A	T	7.807e^-4	0.944	INTRON Git	TF binding site mE1_TFBS_HSA
2R	8334703	2R_8334703_SNP [dm3] 2R_12447198_SNP [dm6]	T	C	7.807e^-4	0.944	INTRON Dyb
3L	20826245	3L_20826245_SNP [dm3] 3L_20833145_SNP [dm6]	T	C	7.807e^-4	0.944	SYNONYMOUS_CODING Pka-R1
3L	4878837	3L_4878837_SNP [dm3] 3L_4878837_SNP [dm6]	T	C	7.807e^-4	0.944	INTRON CG17150
X	16287844	X_16287844_SNP [dm3] X_16393811_SNP [dm6]	A	C	7.807e^-4	0.944	SYNONYMOUS_CODING mei-41
X	21291333	X_21291333_SNP [dm3] X_21420306_SNP [dm6]	A	C	7.807e^-4	0.944	INTERGENIC
2L	5681537	2L_5681537_SNP [dm3] 2L_5681537_SNP [dm6]	A	T	7.866e^-4	0.944	INTERGENIC
2R	17890853	2R_17890853_INS [dm3] 2R_22003348_INS [dm6]	C	CAGATC	7.900e^-4	0.944	INTRON CG34370	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6048062	2R_6048062_SNP [dm3] 2R_10160557_SNP [dm6]	A	T	7.900e^-4	0.944	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21917804	X_21917804_INS [dm3] X_22515968_INS [dm6]	A	ACATA	7.912e^-4	0.944	INTRON CG17600
2R	1196802	2R_1196802_SNP [dm3] 2R_5309297_SNP [dm6]	T	A	7.948e^-4	0.944	INTRON sxc	transposable element FlyBase
2R	1203315	2R_1203315_SNP [dm3] 2R_5315810_SNP [dm6]	G	A	7.948e^-4	0.944	INTRON sxc	transposable element FlyBase
2L	1271790	2L_1271790_SNP [dm3] 2L_1271790_SNP [dm6]	C	G	8.067e^-4	0.944	INTRON robo3
2L	1271791	2L_1271791_SNP [dm3] 2L_1271791_SNP [dm6]	T	C	8.067e^-4	0.944	INTRON robo3
2L	1271830	2L_1271830_SNP [dm3] 2L_1271830_SNP [dm6]	T	C	8.067e^-4	0.944	INTRON robo3
2R	15928322	2R_15928322_SNP [dm3] 2R_20040817_SNP [dm6]	A	G	8.067e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA
2R	17708199	2R_17708199_INS [dm3] 2R_21820694_INS [dm6]	C	TTGGTAGAT	8.067e^-4	0.944	UTR_3_PRIME CG13492	TF binding site mE1_TFBS_cad
2R	17708204	2R_17708204_SNP [dm3] 2R_21820699_SNP [dm6]	C	T	8.067e^-4	0.944	UTR_3_PRIME CG13492	TF binding site mE1_TFBS_cad
2R	18456154	2R_18456154_SNP [dm3] 2R_22568649_SNP [dm6]	T	C	8.067e^-4	0.944	INTRON dnr1	TF binding site mE1_TFBS_Trl
2R	7220230	2R_7220230_SNP [dm3] 2R_11332725_SNP [dm6]	A	T	8.067e^-4	0.944	INTRON sha	TF binding site mE1_TFBS_cad
3L	10668459	3L_10668459_SNP [dm3] 3L_10675359_SNP [dm6]	T	C	8.067e^-4	0.944	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2805333	3L_2805333_SNP [dm3] 3L_2805333_SNP [dm6]	A	C	8.067e^-4	0.944	INTRON CG43444
3L	5981964	3L_5981964_SNP [dm3] 3L_5988864_SNP [dm6]	G	A	8.067e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_sens
3L	7961037	3L_7961037_SNP [dm3] 3L_7967937_SNP [dm6]	A	G	8.067e^-4	0.944	INTERGENIC
3L	7961059	3L_7961059_SNP [dm3] 3L_7967959_SNP [dm6]	G	A	8.067e^-4	0.944	INTERGENIC
3L	7961234	3L_7961234_SNP [dm3] 3L_7968134_SNP [dm6]	G	A	8.067e^-4	0.944	INTERGENIC
3L	7963496	3L_7963496_SNP [dm3] 3L_7970396_SNP [dm6]	C	G	8.067e^-4	0.944	UPSTREAM RNaseX25 INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	14599465	3R_14599465_SNP [dm3] 3R_18773743_SNP [dm6]	C	T	8.067e^-4	0.944	INTRON CG7720
X	19443815	X_19443815_SNP [dm3] X_19549782_SNP [dm6]	G	A	8.067e^-4	0.944	INTERGENIC
2L	16805378	2L_16805378_DEL [dm3] 2L_16805378_DEL [dm6]	TAATT	T	8.158e^-4	0.944	INTRON CG13280 & 1 other
2L	9237108	2L_9237108_SNP [dm3] 2L_9237108_SNP [dm6]	G	A	8.158e^-4	0.944	UPSTREAM tRNA:CR31885 INTRON tai
2R	7262904	2R_7262904_SNP [dm3] 2R_11375399_SNP [dm6]	G	C	8.206e^-4	0.944	NON_SYNONYMOUS_CODING CG13203 START_GAINED CG13203 UTR_5_PRIME CG13203	TF binding site mE1_TFBS_chinmo
3L	11003058	3L_11003058_SNP [dm3] 3L_11009958_SNP [dm6]	G	A	8.206e^-4	0.944	UPSTREAM klu INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16154779	2R_16154779_SNP [dm3] 2R_20267274_SNP [dm6]	C	T	8.209e^-4	0.944	SYNONYMOUS_CODING CG8908	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	17025724	2R_17025724_SNP [dm3] 2R_21138219_SNP [dm6]	G	C	8.209e^-4	0.944	SPLICE_SITE_REGION Magi INTRON Magi	TF binding site mE1_TFBS_chinmo
2R	8911925	2R_8911925_SNP [dm3] 2R_13024420_SNP [dm6]	A	G	8.209e^-4	0.944	INTERGENIC
3L	11659109	3L_11659109_SNP [dm3] 3L_11666009_SNP [dm6]	A	G	8.209e^-4	0.944	INTRON CG32085
3L	11660147	3L_11660147_SNP [dm3] 3L_11667047_SNP [dm6]	G	T	8.209e^-4	0.944	INTRON CG32085
3L	18492202	3L_18492202_SNP [dm3] 3L_18499102_SNP [dm6]	G	A	8.209e^-4	0.944	INTRON AstC-R2
X	11865289	X_11865289_SNP [dm3] X_11971256_SNP [dm6]	T	A	8.209e^-4	0.944	INTRON cac	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12513579	X_12513579_INS [dm3] X_12619546_INS [dm6]	A	AAATTTAACCTAT...	8.209e^-4	0.944	INTRON CG11085
X	12513583	X_12513583_SNP [dm3] X_12619550_SNP [dm6]	G	T	8.209e^-4	0.944	INTRON CG11085
X	12513590	X_12513590_MNP [dm3] X_12619557_MNP [dm6]	GCC	TTT	8.209e^-4	0.944	INTRON CG11085
X	12513594	X_12513594_SNP [dm3] X_12619561_SNP [dm6]	A	T	8.209e^-4	0.944	INTRON CG11085
X	14632585	X_14632585_SNP [dm3] X_14738552_SNP [dm6]	T	G	8.209e^-4	0.944	INTRON NetB
X	14632607	X_14632607_SNP [dm3] X_14738574_SNP [dm6]	C	G	8.209e^-4	0.944	INTRON NetB
X	14632618	X_14632618_SNP [dm3] X_14738585_SNP [dm6]	C	T	8.209e^-4	0.944	INTRON NetB
X	14632626	X_14632626_SNP [dm3] X_14738593_SNP [dm6]	T	C	8.209e^-4	0.944	INTRON NetB
X	14632630	X_14632630_SNP [dm3] X_14738597_SNP [dm6]	C	T	8.209e^-4	0.944	INTRON NetB
2R	11471354	2R_11471354_SNP [dm3] 2R_15583849_SNP [dm6]	G	A	8.256e^-4	0.944	INTERGENIC
2R	14397718	2R_14397718_SNP [dm3] 2R_18510213_SNP [dm6]	C	A	8.256e^-4	0.944	INTERGENIC
2R	17989547	2R_17989547_SNP [dm3] 2R_22102042_SNP [dm6]	A	T	8.256e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	6697543	2R_6697543_SNP [dm3] 2R_10810038_SNP [dm6]	G	A	8.256e^-4	0.944	NON_SYNONYMOUS_CODING CG12935 DOWNSTREAM CG7637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	10815335	3L_10815335_SNP [dm3] 3L_10822235_SNP [dm6]	A	T	8.256e^-4	0.944	INTERGENIC
3L	14507004	3L_14507004_SNP [dm3] 3L_14513904_SNP [dm6]	T	A	8.256e^-4	0.944	INTRON bbg	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_bab1
3L	14558013	3L_14558013_SNP [dm3] 3L_14564913_SNP [dm6]	A	G	8.256e^-4	0.944	INTERGENIC
3L	1588520	3L_1588520_DEL [dm3] 3L_1588520_DEL [dm6]	GCTGCCAGTGG...	G	8.256e^-4	0.944	INTRON CG13917
3L	1601963	3L_1601963_SNP [dm3] 3L_1601963_SNP [dm6]	T	C	8.256e^-4	0.944	UPSTREAM CG33791 & 1 other INTRON CG12104	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1602139	3L_1602139_SNP [dm3] 3L_1602139_SNP [dm6]	G	T	8.256e^-4	0.944	UPSTREAM CG33791 & 2 others INTRON CG12104	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1605659	3L_1605659_SNP [dm3] 3L_1605659_SNP [dm6]	A	T	8.256e^-4	0.944	SPLICE_SITE_REGION CG18170 & 1 other SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170
3L	1605687	3L_1605687_SNP [dm3] 3L_1605687_SNP [dm6]	C	T	8.256e^-4	0.944	INTRON CG33791 & 1 other
3L	1605991	3L_1605991_SNP [dm3] 3L_1605991_SNP [dm6]	T	G	8.256e^-4	0.944	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170	TF binding site mE1_TFBS_cad
3L	1607425	3L_1607425_SNP [dm3] 3L_1607425_SNP [dm6]	C	T	8.256e^-4	0.944	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1710452	3L_1710452_SNP [dm3] 3L_1710452_SNP [dm6]	G	C	8.256e^-4	0.944	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3L	17195776	3L_17195776_SNP [dm3] 3L_17202676_SNP [dm6]	T	C	8.256e^-4	0.944	INTRON Rbp6
3L	17817133	3L_17817133_SNP [dm3] 3L_17824033_SNP [dm6]	G	A	8.256e^-4	0.944	INTRON Grd
3L	17817806	3L_17817806_SNP [dm3] 3L_17824706_SNP [dm6]	T	C	8.256e^-4	0.944	INTRON Grd
3L	17817811	3L_17817811_SNP [dm3] 3L_17824711_SNP [dm6]	G	T	8.256e^-4	0.944	INTRON Grd
3L	19172182	3L_19172182_INS [dm3] 3L_19179082_INS [dm6]	A	AAGGAATAA	8.256e^-4	0.944	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	19263322	3L_19263322_SNP [dm3] 3L_19270222_SNP [dm6]	T	G	8.256e^-4	0.944	NON_SYNONYMOUS_CODING CG14088 INTRON CG14085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19263323	3L_19263323_SNP [dm3] 3L_19270223_SNP [dm6]	A	G	8.256e^-4	0.944	SYNONYMOUS_CODING CG14088 INTRON CG14085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19263504	3L_19263504_SNP [dm3] 3L_19270404_SNP [dm6]	A	G	8.256e^-4	0.944	NON_SYNONYMOUS_CODING CG14088 INTRON CG14085	TF binding site mE1_TFBS_cad
3L	2363823	3L_2363823_SNP [dm3] 3L_2363823_SNP [dm6]	G	T	8.256e^-4	0.944	INTERGENIC
3L	2363844	3L_2363844_SNP [dm3] 3L_2363844_SNP [dm6]	G	A	8.256e^-4	0.944	INTERGENIC
3L	2363880	3L_2363880_INS [dm3] 3L_2363880_INS [dm6]	C	CGTATATTTAC...	8.256e^-4	0.944	INTERGENIC
3L	3301861	3L_3301861_SNP [dm3] 3L_3301861_SNP [dm6]	A	G	8.256e^-4	0.944	UPSTREAM CG14968 INTRON CG14968	TF binding site mE1_TFBS_Trl
3L	3380756	3L_3380756_SNP [dm3] 3L_3380756_SNP [dm6]	T	C	8.256e^-4	0.944	DOWNSTREAM CG12014 INTERGENIC
3L	3380763	3L_3380763_SNP [dm3] 3L_3380763_SNP [dm6]	T	C	8.256e^-4	0.944	DOWNSTREAM CG12014 INTERGENIC
3L	3746449	3L_3746449_SNP [dm3] 3L_3746449_SNP [dm6]	G	A	8.256e^-4	0.944	UTR_5_PRIME CG32264 INTRON CG32264
3L	4310054	3L_4310054_SNP [dm3] 3L_4310054_SNP [dm6]	A	T	8.256e^-4	0.944	INTERGENIC
3L	4310139	3L_4310139_SNP [dm3] 3L_4310139_SNP [dm6]	G	A	8.256e^-4	0.944	INTERGENIC
3L	4970403	3L_4970403_SNP [dm3] 3L_4970403_SNP [dm6]	A	G	8.256e^-4	0.944	INTRON Con	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5054590	3L_5054590_SNP [dm3] 3L_5054590_SNP [dm6]	C	G	8.256e^-4	0.944	INTRON Con
3L	762750	3L_762750_SNP [dm3] 3L_762750_SNP [dm6]	G	A	8.256e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9511706	3L_9511706_SNP [dm3] 3L_9518606_SNP [dm6]	C	G	8.256e^-4	0.944	INTRON CG33700
3L	9832901	3L_9832901_DEL [dm3] 3L_9839801_DEL [dm6]	TT	T	8.256e^-4	0.944	UTR_3_PRIME RasGAP1
3L	9832961	3L_9832961_SNP [dm3] 3L_9839861_SNP [dm6]	C	T	8.256e^-4	0.944	UTR_3_PRIME RasGAP1
3R	10914072	3R_10914072_INS [dm3] 3R_15088350_INS [dm6]	T	TG	8.256e^-4	0.944	INTRON CG6966
3R	10914075	3R_10914075_SNP [dm3] 3R_15088353_SNP [dm6]	C	T	8.256e^-4	0.944	INTRON CG6966
3R	10914095	3R_10914095_SNP [dm3] 3R_15088373_SNP [dm6]	A	T	8.256e^-4	0.944	INTRON CG6966
3R	14037353	3R_14037353_SNP [dm3] 3R_18211631_SNP [dm6]	C	T	8.256e^-4	0.944	INTRON CG7985
3R	16748361	3R_16748361_SNP [dm3] 3R_20922639_SNP [dm6]	G	A	8.256e^-4	0.944	INTRON CG31191 & 1 other
3R	16748416	3R_16748416_SNP [dm3] 3R_20922694_SNP [dm6]	C	T	8.256e^-4	0.944	INTRON CG31191 & 1 other
3R	17821110	3R_17821110_SNP [dm3] 3R_21995388_SNP [dm6]	G	A	8.256e^-4	0.944	INTRON Eip93F
3R	18418415	3R_18418415_SNP [dm3] 3R_22592693_SNP [dm6]	G	T	8.256e^-4	0.944	INTRON Efa6
3R	18418420	3R_18418420_SNP [dm3] 3R_22592698_SNP [dm6]	C	T	8.256e^-4	0.944	INTRON Efa6
3R	19560904	3R_19560904_SNP [dm3] 3R_23735182_SNP [dm6]	G	A	8.256e^-4	0.944	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19630463	3R_19630463_SNP [dm3] 3R_23804741_SNP [dm6]	A	T	8.256e^-4	0.944	INTRON CG33111 & 1 other
3R	19630471	3R_19630471_INS [dm3] 3R_23804749_INS [dm6]	T	TT	8.256e^-4	0.944	INTRON CG33111 & 1 other
3R	19630479	3R_19630479_SNP [dm3] 3R_23804757_SNP [dm6]	T	C	8.256e^-4	0.944	INTRON CG33111 & 1 other
3R	24685778	3R_24685778_SNP [dm3] 3R_28860056_SNP [dm6]	C	T	8.256e^-4	0.944	UPSTREAM Inx3 INTRON spg	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24685781	3R_24685781_SNP [dm3] 3R_28860059_SNP [dm6]	A	G	8.256e^-4	0.944	UPSTREAM Inx3 INTRON spg	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24707407	3R_24707407_SNP [dm3] 3R_28881685_SNP [dm6]	A	T	8.256e^-4	0.944	NON_SYNONYMOUS_CODING CG14527 INTRON CG33203
3R	24715623	3R_24715623_SNP [dm3] 3R_28889901_SNP [dm6]	C	G	8.256e^-4	0.944	INTRON Doa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	24716227	3R_24716227_INS [dm3] 3R_28890505_INS [dm6]	T	TTGAATGGGTATATCCCGAT...	8.256e^-4	0.944	INTRON Doa
3R	27252500	3R_27252500_SNP [dm3] 3R_31426778_SNP [dm6]	C	T	8.256e^-4	0.944	INTRON Gprk2
3R	27263311	3R_27263311_SNP [dm3] 3R_31437589_SNP [dm6]	A	G	8.256e^-4	0.944	INTRON Gprk2
3R	27267710	3R_27267710_SNP [dm3] 3R_31441988_SNP [dm6]	A	C	8.256e^-4	0.944	INTRON Gprk2
3R	27269205	3R_27269205_SNP [dm3] 3R_31443483_SNP [dm6]	G	T	8.256e^-4	0.944	INTRON Gprk2
3R	27276604	3R_27276604_SNP [dm3] 3R_31450882_SNP [dm6]	T	G	8.256e^-4	0.944	INTRON Gprk2
3R	6864623	3R_6864623_SNP [dm3] 3R_11038901_SNP [dm6]	G	C	8.256e^-4	0.944	INTRON CG34114	TF binding site mE1_TFBS_inv
3R	6864707	3R_6864707_SNP [dm3] 3R_11038985_SNP [dm6]	C	G	8.256e^-4	0.944	INTRON CG34114	TF binding site mE1_TFBS_inv
3R	8782283	3R_8782283_SNP [dm3] 3R_12956561_SNP [dm6]	C	T	8.256e^-4	0.944	INTRON grsm
3R	8782379	3R_8782379_SNP [dm3] 3R_12956657_SNP [dm6]	T	A	8.256e^-4	0.944	INTRON grsm
3R	8858574	3R_8858574_SNP [dm3] 3R_13032852_SNP [dm6]	C	T	8.256e^-4	0.944	INTRON ry	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8929258	3R_8929258_SNP [dm3] 3R_13103536_SNP [dm6]	A	G	8.256e^-4	0.944	INTRON timeout
3R	8929266	3R_8929266_SNP [dm3] 3R_13103544_SNP [dm6]	A	T	8.256e^-4	0.944	INTRON timeout
3R	8929271	3R_8929271_SNP [dm3] 3R_13103549_SNP [dm6]	A	T	8.256e^-4	0.944	INTRON timeout
3R	8929279	3R_8929279_DEL [dm3] 3R_13103557_DEL [dm6]	TTCCTAGTTAAAACTA...	G	8.256e^-4	0.944	INTRON timeout
3R	8929345	3R_8929345_SNP [dm3] 3R_13103623_SNP [dm6]	G	A	8.256e^-4	0.944	INTRON timeout
3R	8929355	3R_8929355_SNP [dm3] 3R_13103633_SNP [dm6]	G	T	8.256e^-4	0.944	INTRON timeout
3R	8929374	3R_8929374_SNP [dm3] 3R_13103652_SNP [dm6]	C	T	8.256e^-4	0.944	INTRON timeout
3R	8929396	3R_8929396_SNP [dm3] 3R_13103674_SNP [dm6]	C	T	8.256e^-4	0.944	INTRON timeout
3R	9729456	3R_9729456_SNP [dm3] 3R_13903734_SNP [dm6]	C	G	8.256e^-4	0.944	SYNONYMOUS_CODING ems	regulatory region FlyBase TF binding site mE1_TFBS_cad
3R	9729459	3R_9729459_SNP [dm3] 3R_13903737_SNP [dm6]	A	G	8.256e^-4	0.944	SYNONYMOUS_CODING ems	regulatory region FlyBase TF binding site mE1_TFBS_cad
X	17635879	X_17635879_DEL [dm3] X_17741846_DEL [dm6]	CC	C	8.256e^-4	0.944	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21132955	X_21132955_SNP [dm3] X_21261928_SNP [dm6]	G	A	8.256e^-4	0.944	INTRON CG32521
X	6683309	X_6683309_SNP [dm3] X_6789276_SNP [dm6]	C	A	8.256e^-4	0.944	INTRON C3G
3L	7400847	3L_7400847_SNP [dm3] 3L_7407747_SNP [dm6]	A	G	8.304e^-4	0.944	DOWNSTREAM CR44525 INTERGENIC
X	13729137	X_13729137_SNP [dm3] X_13835104_SNP [dm6]	G	A	8.321e^-4	0.944	SYNONYMOUS_CODING AMPdeam UTR_5_PRIME AMPdeam
X	19495575	X_19495575_SNP [dm3] X_19601542_SNP [dm6]	G	C	8.321e^-4	0.944	INTRON CG14220	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	19498894	X_19498894_SNP [dm3] X_19604861_SNP [dm6]	G	A	8.321e^-4	0.944	UPSTREAM CG14207 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18221440	3L_18221440_SNP [dm3] 3L_18228340_SNP [dm6]	T	C	8.364e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3102164	2L_3102164_SNP [dm3] 2L_3102164_SNP [dm6]	C	T	8.463e^-4	0.944	INTRON toc
2L	4447555	2L_4447555_SNP [dm3] 2L_4447555_SNP [dm6]	G	A	8.463e^-4	0.944	SYNONYMOUS_CODING MFS18 DOWNSTREAM Elp3	TF binding site mE1_TFBS_sens
2L	6872545	2L_6872545_SNP [dm3] 2L_6872545_SNP [dm6]	G	A	8.463e^-4	0.944	UPSTREAM CR44914 & 1 other INTERGENIC
2L	6872654	2L_6872654_SNP [dm3] 2L_6872654_SNP [dm6]	C	A	8.463e^-4	0.944	UPSTREAM CR44914 & 1 other INTERGENIC
2L	9517584	2L_9517584_SNP [dm3] 2L_9517584_SNP [dm6]	T	C	8.463e^-4	0.944	SYNONYMOUS_CODING CG33298
2R	4392617	2R_4392617_DEL [dm3] 2R_8505112_DEL [dm6]	CTGTTGCCCAGGTC...	C	8.491e^-4	0.944	INTRON mtt
2L	10429059	2L_10429059_SNP [dm3] 2L_10429059_SNP [dm6]	A	G	8.523e^-4	0.944	NON_SYNONYMOUS_CODING CG5188 DOWNSTREAM KdelR & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	1291987	2L_1291987_SNP [dm3] 2L_1291987_SNP [dm6]	C	G	8.735e^-4	0.944	INTRON robo3
2L	4314172	2L_4314172_SNP [dm3] 2L_4314172_SNP [dm6]	G	C	8.735e^-4	0.944	INTRON tutl
2L	6625424	2L_6625424_SNP [dm3] 2L_6625424_SNP [dm6]	C	T	8.735e^-4	0.944	SYNONYMOUS_CODING Oatp26F DOWNSTREAM CG34345	TF binding site mE1_TFBS_inv
2L	841966	2L_841966_SNP [dm3] 2L_841966_SNP [dm6]	G	C	8.735e^-4	0.944	INTRON drongo
3R	23237697	3R_23237697_SNP [dm3] 3R_27411975_SNP [dm6]	T	C	8.742e^-4	0.944	INTRON side
2R	18441172	2R_18441172_SNP [dm3] 2R_22553667_SNP [dm6]	C	A	8.745e^-4	0.944	INTRON px
X	2307578	X_2307578_SNP [dm3] X_2413545_SNP [dm6]	C	T	8.755e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15480689	2R_15480689_SNP [dm3] 2R_19593184_SNP [dm6]	A	T	8.756e^-4	0.944	UPSTREAM CG16716 INTRON sm
2R	1804228	2R_1804228_SNP [dm3] 2R_5916723_SNP [dm6]	A	G	8.756e^-4	0.944	INTRON CG43366	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18898818	2R_18898818_SNP [dm3] 2R_23011295_SNP [dm6]	T	A	8.756e^-4	0.944	UTR_3_PRIME CG42741 INTRON twi
2R	7262909	2R_7262909_SNP [dm3] 2R_11375404_SNP [dm6]	C	A	8.756e^-4	0.944	NON_SYNONYMOUS_CODING CG13203 UTR_5_PRIME CG13203	TF binding site mE1_TFBS_chinmo
3L	11002923	3L_11002923_SNP [dm3] 3L_11009823_SNP [dm6]	C	T	8.756e^-4	0.944	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3L	11002924	3L_11002924_INS [dm3] 3L_11009824_INS [dm6]	T	TTATGTGGTGAGC...	8.756e^-4	0.944	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3L	11002928	3L_11002928_SNP [dm3] 3L_11009828_SNP [dm6]	C	T	8.756e^-4	0.944	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3L	11002932	3L_11002932_SNP [dm3] 3L_11009832_SNP [dm6]	A	G	8.756e^-4	0.944	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3L	11002955	3L_11002955_SNP [dm3] 3L_11009855_SNP [dm6]	C	A	8.756e^-4	0.944	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3L	11003011	3L_11003011_SNP [dm3] 3L_11009911_SNP [dm6]	C	T	8.756e^-4	0.944	UPSTREAM klu INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
X	9135309	X_9135309_SNP [dm3] X_9241276_SNP [dm6]	A	G	8.756e^-4	0.944	SYNONYMOUS_CODING mxc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9135450	X_9135450_SNP [dm3] X_9241417_SNP [dm6]	G	A	8.756e^-4	0.944	SYNONYMOUS_CODING mxc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9139525	X_9139525_SNP [dm3] X_9245492_SNP [dm6]	A	T	8.756e^-4	0.944	SYNONYMOUS_CODING Larp7 DOWNSTREAM amx	TF binding site BDTNP1_TFBS_dl
X	9139538	X_9139538_SNP [dm3] X_9245505_SNP [dm6]	C	G	8.756e^-4	0.944	NON_SYNONYMOUS_CODING Larp7 DOWNSTREAM amx	TF binding site BDTNP1_TFBS_dl
X	9139759	X_9139759_INS [dm3] X_9245726_INS [dm6]	C	CC	8.756e^-4	0.944	UTR_3_PRIME Larp7 DOWNSTREAM amx	TF binding site BDTNP1_TFBS_dl
X	9139781	X_9139781_SNP [dm3] X_9245748_SNP [dm6]	T	C	8.756e^-4	0.944	UTR_3_PRIME Larp7 DOWNSTREAM amx	TF binding site BDTNP1_TFBS_dl
X	9140477	X_9140477_SNP [dm3] X_9246444_SNP [dm6]	A	G	8.756e^-4	0.944	SYNONYMOUS_CODING amx UPSTREAM Dsor1 DOWNSTREAM Larp7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_jumu mE1_TFBS_sens
X	9140537	X_9140537_SNP [dm3] X_9246504_SNP [dm6]	C	T	8.756e^-4	0.944	SYNONYMOUS_CODING amx UPSTREAM Dsor1 DOWNSTREAM Larp7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_jumu mE1_TFBS_sens
X	9141586	X_9141586_SNP [dm3] X_9247553_SNP [dm6]	C	A	8.756e^-4	0.944	UTR_5_PRIME Dsor1 UPSTREAM Dsor1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	10177910	3R_10177910_INS [dm3] 3R_14352188_INS [dm6]	T	TT	8.763e^-4	0.944	INTRON NK7.1
2R	18068453	2R_18068453_SNP [dm3] 2R_22180948_SNP [dm6]	G	T	8.777e^-4	0.944	INTRON CG11170 & 1 other
3L	11194071	3L_11194071_SNP [dm3] 3L_11200971_SNP [dm6]	G	A	8.777e^-4	0.944	UPSTREAM CG14141 DOWNSTREAM CG7607 INTRON Plod
2R	11551313	2R_11551313_SNP [dm3] 2R_15663808_SNP [dm6]	G	A	8.845e^-4	0.944	INTRON fus	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11551314	2R_11551314_SNP [dm3] 2R_15663809_SNP [dm6]	T	A	8.845e^-4	0.944	INTRON fus	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10668397	3L_10668397_SNP [dm3] 3L_10675297_SNP [dm6]	C	T	8.845e^-4	0.944	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11666055	3L_11666055_SNP [dm3] 3L_11672955_SNP [dm6]	C	G	8.845e^-4	0.944	INTRON CG32085
3L	12316307	3L_12316307_SNP [dm3] 3L_12323207_SNP [dm6]	C	G	8.845e^-4	0.944	INTERGENIC
3L	2628002	3L_2628002_SNP [dm3] 3L_2628002_SNP [dm6]	T	C	8.845e^-4	0.944	INTRON Pxn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	6060509	2R_6060509_SNP [dm3] 2R_10173004_SNP [dm6]	A	C	8.849e^-4	0.944	INTRON KCNQ
X	12513597	X_12513597_INS [dm3] X_12619564_INS [dm6]	G	TGCATA	8.866e^-4	0.944	INTRON CG11085
X	3889775	X_3889775_SNP [dm3] X_3995742_SNP [dm6]	C	G	8.866e^-4	0.944	INTERGENIC
2L	6938296	2L_6938296_SNP [dm3] 2L_6938296_SNP [dm6]	T	C	8.950e^-4	0.944	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_chinmo
X	4536798	X_4536798_SNP [dm3] X_4642765_SNP [dm6]	C	T	8.950e^-4	0.944	INTRON CG3081 & 1 other	TF binding site mE1_TFBS_chinmo
2R	10986734	2R_10986734_SNP [dm3] 2R_15099229_SNP [dm6]	A	G	8.957e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	10986736	2R_10986736_SNP [dm3] 2R_15099231_SNP [dm6]	G	T	8.957e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	4373919	2R_4373919_SNP [dm3] 2R_8486414_SNP [dm6]	A	T	8.982e^-4	0.944	INTRON mtt
2R	12563449	2R_12563449_SNP [dm3] 2R_16675944_SNP [dm6]	A	T	9.032e^-4	0.944	INTRON CG30463
3L	2651570	3L_2651570_SNP [dm3] 3L_2651570_SNP [dm6]	T	A	9.087e^-4	0.944	SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
3R	14699040	3R_14699040_SNP [dm3] 3R_18873318_SNP [dm6]	A	G	9.087e^-4	0.944	INTERGENIC
2R	4393453	2R_4393453_SNP [dm3] 2R_8505948_SNP [dm6]	C	T	9.125e^-4	0.944	INTRON mtt
3L	10674627	3L_10674627_SNP [dm3] 3L_10681527_SNP [dm6]	C	T	9.125e^-4	0.944	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3L	10674816	3L_10674816_SNP [dm3] 3L_10681716_SNP [dm6]	A	G	9.125e^-4	0.944	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3L	10675350	3L_10675350_SNP [dm3] 3L_10682250_SNP [dm6]	A	T	9.125e^-4	0.944	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10675752	3L_10675752_SNP [dm3] 3L_10682652_SNP [dm6]	T	A	9.125e^-4	0.944	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10675819	3L_10675819_INS [dm3] 3L_10682719_INS [dm6]	A	AT	9.125e^-4	0.944	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	12722584	3L_12722584_SNP [dm3] 3L_12729484_SNP [dm6]	G	T	9.125e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14731830	3L_14731830_SNP [dm3] 3L_14738730_SNP [dm6]	A	G	9.125e^-4	0.944	INTRON ome
3L	15741888	3L_15741888_SNP [dm3] 3L_15748788_SNP [dm6]	G	T	9.125e^-4	0.944	DOWNSTREAM CR45240 INTERGENIC
3L	16028390	3L_16028390_SNP [dm3] 3L_16035290_SNP [dm6]	T	G	9.125e^-4	0.944	UPSTREAM CG5895 DOWNSTREAM CG42538 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16028429	3L_16028429_SNP [dm3] 3L_16035329_SNP [dm6]	G	A	9.125e^-4	0.944	UPSTREAM CG5895 DOWNSTREAM CG42538 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1699673	3L_1699673_INS [dm3] 3L_1699673_INS [dm6]	T	TT	9.125e^-4	0.944	INTRON CG7991	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	1699690	3L_1699690_SNP [dm3] 3L_1699690_SNP [dm6]	G	C	9.125e^-4	0.944	INTRON CG7991	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	17257477	3L_17257477_SNP [dm3] 3L_17264377_SNP [dm6]	T	C	9.125e^-4	0.944	UPSTREAM CG13723 DOWNSTREAM CR43870 INTERGENIC
3L	2254035	3L_2254035_DEL [dm3] 3L_2254035_DEL [dm6]	TT	T	9.125e^-4	0.944	INTRON CG1275	TF binding site mE1_TFBS_cad
3L	2254040	3L_2254040_SNP [dm3] 3L_2254040_SNP [dm6]	C	T	9.125e^-4	0.944	INTRON CG1275	TF binding site mE1_TFBS_cad
3L	2612589	3L_2612589_SNP [dm3] 3L_2612589_SNP [dm6]	C	G	9.125e^-4	0.944	INTRON Pxn
3L	2662128	3L_2662128_SNP [dm3] 3L_2662128_SNP [dm6]	A	G	9.125e^-4	0.944	DOWNSTREAM CG33233 INTRON Fife & 1 other
3L	4345339	3L_4345339_SNP [dm3] 3L_4345339_SNP [dm6]	C	T	9.125e^-4	0.944	UPSTREAM CR45156 INTRON Cip4
3L	536755	3L_536755_SNP [dm3] 3L_536755_SNP [dm6]	A	T	9.125e^-4	0.944	INTRON klar
3L	763686	3L_763686_SNP [dm3] 3L_763686_SNP [dm6]	C	T	9.125e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7966931	3L_7966931_SNP [dm3] 3L_7973831_SNP [dm6]	T	C	9.125e^-4	0.944	NON_SYNONYMOUS_CODING CG8042	TF binding site mE1_TFBS_chinmo
3L	8161772	3L_8161772_SNP [dm3] 3L_8168672_SNP [dm6]	A	G	9.125e^-4	0.944	INTERGENIC
3R	11315644	3R_11315644_SNP [dm3] 3R_15489922_SNP [dm6]	C	A	9.125e^-4	0.944	SYNONYMOUS_CODING CG5205	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	1260582	3R_1260582_SNP [dm3] 3R_5434860_SNP [dm6]	C	A	9.125e^-4	0.944	INTRON CG14669	TF binding site mE1_TFBS_cad
3R	12798959	3R_12798959_INS [dm3] 3R_16973237_INS [dm6]	T	TTTC	9.125e^-4	0.944	INTERGENIC
3R	12798962	3R_12798962_SNP [dm3] 3R_16973240_SNP [dm6]	A	T	9.125e^-4	0.944	INTERGENIC
3R	12798963	3R_12798963_SNP [dm3] 3R_16973241_SNP [dm6]	T	A	9.125e^-4	0.944	INTERGENIC
3R	12798984	3R_12798984_SNP [dm3] 3R_16973262_SNP [dm6]	A	C	9.125e^-4	0.944	INTERGENIC
3R	12798995	3R_12798995_SNP [dm3] 3R_16973273_SNP [dm6]	A	G	9.125e^-4	0.944	INTERGENIC
3R	12798998	3R_12798998_SNP [dm3] 3R_16973276_SNP [dm6]	G	T	9.125e^-4	0.944	INTERGENIC
3R	1404043	3R_1404043_SNP [dm3] 3R_5578321_SNP [dm6]	T	C	9.125e^-4	0.944	SYNONYMOUS_CODING CRMP UTR_3_PRIME CRMP DOWNSTREAM CG2926
3R	14664116	3R_14664116_SNP [dm3] 3R_18838394_SNP [dm6]	G	A	9.125e^-4	0.944	INTRON CG18208
3R	14664120	3R_14664120_SNP [dm3] 3R_18838398_SNP [dm6]	A	G	9.125e^-4	0.944	INTRON CG18208
3R	15641213	3R_15641213_SNP [dm3] 3R_19815491_SNP [dm6]	G	C	9.125e^-4	0.944	INTRON bnl
3R	15921737	3R_15921737_SNP [dm3] 3R_20096015_SNP [dm6]	G	T	9.125e^-4	0.944	INTERGENIC
3R	1762487	3R_1762487_SNP [dm3] 3R_5936765_SNP [dm6]	A	C	9.125e^-4	0.944	INTRON CG34113
3R	23636737	3R_23636737_SNP [dm3] 3R_27811015_SNP [dm6]	C	T	9.125e^-4	0.944	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3R	23651135	3R_23651135_SNP [dm3] 3R_27825413_SNP [dm6]	C	G	9.125e^-4	0.944	INTRON CG34353
3R	24605953	3R_24605953_SNP [dm3] 3R_28780231_SNP [dm6]	G	A	9.125e^-4	0.944	INTERGENIC
3R	24637209	3R_24637209_SNP [dm3] 3R_28811487_SNP [dm6]	T	C	9.125e^-4	0.944	UPSTREAM CG1646 & 1 other INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	24704592	3R_24704592_SNP [dm3] 3R_28878870_SNP [dm6]	C	T	9.125e^-4	0.944	SYNONYMOUS_CODING CG14523 INTRON CG33203
3R	24704635	3R_24704635_SNP [dm3] 3R_28878913_SNP [dm6]	C	G	9.125e^-4	0.944	NON_SYNONYMOUS_CODING CG14523 INTRON CG33203	TF binding site mE1_TFBS_cad
3R	7051016	3R_7051016_SNP [dm3] 3R_11225294_SNP [dm6]	G	A	9.125e^-4	0.944	UPSTREAM scpr-C DOWNSTREAM snoRNA:Me28S-G2017 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
3R	8221735	3R_8221735_SNP [dm3] 3R_12396013_SNP [dm6]	C	T	9.125e^-4	0.944	UPSTREAM CG10096 & 1 other INTRON CG34402 EXON Cyp9f3Psi
3R	846948	3R_846948_SNP [dm3] 3R_5021226_SNP [dm6]	G	A	9.125e^-4	0.944	EXON CR45585	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	851288	3R_851288_SNP [dm3] 3R_5025566_SNP [dm6]	G	A	9.125e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Stat92E
3R	861617	3R_861617_SNP [dm3] 3R_5035895_SNP [dm6]	T	C	9.125e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	861654	3R_861654_SNP [dm3] 3R_5035932_SNP [dm6]	G	A	9.125e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	861880	3R_861880_SNP [dm3] 3R_5036158_SNP [dm6]	C	T	9.125e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	863423	3R_863423_SNP [dm3] 3R_5037701_SNP [dm6]	C	A	9.125e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	865779	3R_865779_SNP [dm3] 3R_5040057_SNP [dm6]	C	T	9.125e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	885592	3R_885592_SNP [dm3] 3R_5059870_SNP [dm6]	T	G	9.125e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_sens
3R	888373	3R_888373_SNP [dm3] 3R_5062651_SNP [dm6]	G	A	9.125e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	888747	3R_888747_SNP [dm3] 3R_5063025_SNP [dm6]	A	G	9.125e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_cad
3R	888784	3R_888784_SNP [dm3] 3R_5063062_SNP [dm6]	G	A	9.125e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_cad
3R	891820	3R_891820_SNP [dm3] 3R_5066098_SNP [dm6]	T	A	9.125e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	901150	3R_901150_SNP [dm3] 3R_5075428_SNP [dm6]	T	G	9.125e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	906577	3R_906577_SNP [dm3] 3R_5080855_SNP [dm6]	G	T	9.125e^-4	0.944	UTR_3_PRIME corto
3R	907147	3R_907147_SNP [dm3] 3R_5081425_SNP [dm6]	T	C	9.125e^-4	0.944	UTR_3_PRIME corto
3R	921164	3R_921164_SNP [dm3] 3R_5095442_SNP [dm6]	A	G	9.125e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	921187	3R_921187_SNP [dm3] 3R_5095465_SNP [dm6]	T	G	9.125e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	930823	3R_930823_SNP [dm3] 3R_5105101_SNP [dm6]	C	G	9.125e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4794140	2L_4794140_SNP [dm3] 2L_4794140_SNP [dm6]	G	A	9.186e^-4	0.944	UPSTREAM CG3294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3380842	3L_3380842_SNP [dm3] 3L_3380842_SNP [dm6]	C	T	9.335e^-4	0.944	DOWNSTREAM CG12014 INTERGENIC
2L	12796658	2L_12796658_INS [dm3] 2L_12796658_INS [dm6]	A	AAGCACA	9.361e^-4	0.944	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14986513	2R_14986513_SNP [dm3] 2R_19099008_SNP [dm6]	T	A	9.369e^-4	0.944	INTRON 5-HT1A
2R	17708207	2R_17708207_INS [dm3] 2R_21820702_INS [dm6]	T	TTATTATTGGTTTATT...	9.369e^-4	0.944	UTR_3_PRIME CG13492	TF binding site mE1_TFBS_cad
X	18835047	X_18835047_SNP [dm3] X_18941014_SNP [dm6]	C	T	9.369e^-4	0.944	INTRON CG43759
2R	1246085	2R_1246085_SNP [dm3] 2R_5358580_SNP [dm6]	G	A	9.369e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	1246197	2R_1246197_DEL [dm3] 2R_5358692_DEL [dm6]	GGCAACTGT	CC	9.369e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	26369271	3R_26369271_SNP [dm3] 3R_30543549_SNP [dm6]	A	G	9.410e^-4	0.944	INTRON tmod	TF binding site BDTNP1_TFBS_twi
3R	816474	3R_816474_SNP [dm3] 3R_4990752_SNP [dm6]	G	T	9.410e^-4	0.944	INTRON CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2R	16500022	2R_16500022_SNP [dm3] 2R_20612517_SNP [dm6]	A	C	9.428e^-4	0.944	INTRON Hil
2R	5427749	2R_5427749_SNP [dm3] 2R_9540244_SNP [dm6]	G	A	9.428e^-4	0.944	UTR_3_PRIME brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	22190150	2L_22190150_SNP [dm3] 2L_22190150_SNP [dm6]	A	G	9.519e^-4	0.944	INTRON Ir40a
X	21917480	X_21917480_INS [dm3] X_22515644_INS [dm6]	A	ACACTGACTGAAAA...	9.544e^-4	0.944	UPSTREAM CR43962 INTRON CG17600	TF binding site mE1_TFBS_HSA
3R	12117193	3R_12117193_SNP [dm3] 3R_16291471_SNP [dm6]	G	T	9.664e^-4	0.944	INTRON gish
2R	15781994	2R_15781994_SNP [dm3] 2R_19894489_SNP [dm6]	G	A	9.801e^-4	0.944	INTERGENIC
2R	4447463	2R_4447463_SNP [dm3] 2R_8559958_SNP [dm6]	T	C	9.801e^-4	0.944	INTERGENIC
2R	7182471	2R_7182471_SNP [dm3] 2R_11294966_SNP [dm6]	G	C	9.801e^-4	0.944	NON_SYNONYMOUS_CODING CG42336 UPSTREAM CG18336 INTRON CG42336	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8530621	2R_8530621_SNP [dm3] 2R_12643116_SNP [dm6]	G	C	9.801e^-4	0.944	INTRON CG8785
2R	9356201	2R_9356201_SNP [dm3] 2R_13468696_SNP [dm6]	T	C	9.801e^-4	0.944	INTRON arr
3L	10328703	3L_10328703_SNP [dm3] 3L_10335603_SNP [dm6]	G	A	9.801e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	26366127	3R_26366127_SNP [dm3] 3R_30540405_SNP [dm6]	G	T	9.801e^-4	0.944	INTRON tmod
3R	26366128	3R_26366128_SNP [dm3] 3R_30540406_SNP [dm6]	T	C	9.801e^-4	0.944	INTRON tmod
X	10568042	X_10568042_SNP [dm3] X_10674009_SNP [dm6]	T	C	9.801e^-4	0.944	UPSTREAM CG12637 INTRON X11Lbeta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2833779	X_2833779_SNP [dm3] X_2939746_SNP [dm6]	A	C	9.801e^-4	0.944	SYNONYMOUS_CODING CG14420 INTRON kirre
X	8674354	X_8674354_SNP [dm3] X_8780321_SNP [dm6]	T	G	9.801e^-4	0.944	INTRON Lim1
X	8674372	X_8674372_SNP [dm3] X_8780339_SNP [dm6]	C	T	9.801e^-4	0.944	INTRON Lim1
2R	1594872	2R_1594872_SNP [dm3] 2R_5707367_SNP [dm6]	C	T	9.837e^-4	0.944	UTR_3_PRIME ap
2R	17986432	2R_17986432_SNP [dm3] 2R_22098927_SNP [dm6]	A	G	9.837e^-4	0.944	INTRON CG11073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12829962	2R_12829962_SNP [dm3] 2R_16942457_SNP [dm6]	T	A	9.845e^-4	0.944	INTRON Pkc53E
2R	1715182	2R_1715182_SNP [dm3] 2R_5827677_SNP [dm6]	C	T	9.845e^-4	0.944	INTRON dpr12
2R	20130303	2R_20130303_SNP [dm3] 2R_24242780_SNP [dm6]	A	G	9.845e^-4	0.944	UPSTREAM nord INTERGENIC
2R	20130445	2R_20130445_SNP [dm3] 2R_24242922_SNP [dm6]	C	T	9.845e^-4	0.944	UPSTREAM nord INTERGENIC
2R	8904353	2R_8904353_SNP [dm3] 2R_13016848_SNP [dm6]	T	G	9.845e^-4	0.944	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9441252	2R_9441252_SNP [dm3] 2R_13553747_SNP [dm6]	A	C	9.845e^-4	0.944	UPSTREAM Roe1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	2417548	3L_2417548_SNP [dm3] 3L_2417548_SNP [dm6]	T	G	9.845e^-4	0.944	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl
3L	1488202	3L_1488202_SNP [dm3] 3L_1488202_SNP [dm6]	T	C	9.949e^-4	0.944	UPSTREAM CR43701 & 1 other INTRON stet	TF binding site mE1_TFBS_cad
3R	4337161	3R_4337161_SNP [dm3] 3R_8511439_SNP [dm6]	T	G	9.949e^-4	0.944	UPSTREAM Or85b DOWNSTREAM Or85c INTERGENIC

By genomic position
Variant impact
Gene name

Climb_Week6 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results