DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.353e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.0279869
In_3R_P	0.0417529

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1119 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	6058193	2R_6058193_SNP [dm3] 2R_10170688_SNP [dm6]	A	G	3.411e^-6	0.446	INTRON KCNQ
3L	10482061	3L_10482061_SNP [dm3] 3L_10488961_SNP [dm6]	A	C	3.411e^-6	0.446	INTRON A2bp1
3L	17345094	3L_17345094_SNP [dm3] 3L_17351994_SNP [dm6]	C	A	3.411e^-6	0.446	UPSTREAM CG7692 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8282962	3L_8282962_SNP [dm3] 3L_8289862_SNP [dm6]	A	C	3.411e^-6	0.446	UTR_5_PRIME cert UPSTREAM cert DOWNSTREAM CG7201	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	5485369	X_5485369_SNP [dm3] X_5591336_SNP [dm6]	C	A	3.411e^-6	0.446	INTERGENIC
X	7727681	X_7727681_DEL [dm3] X_7833648_DEL [dm6]	ATCTA	A	3.411e^-6	0.446	INTRON CG1402
X	7727689	X_7727689_SNP [dm3] X_7833656_SNP [dm6]	T	C	3.411e^-6	0.446	INTRON CG1402
2R	13252522	2R_13252522_SNP [dm3] 2R_17365017_SNP [dm6]	C	G	8.544e^-6	0.446	UTR_3_PRIME mbl INTRON mbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5484962	X_5484962_SNP [dm3] X_5590929_SNP [dm6]	T	C	8.544e^-6	0.446	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10480415	3L_10480415_SNP [dm3] 3L_10487315_SNP [dm6]	G	A	1.053e^-5	0.446	INTRON A2bp1
3L	10480525	3L_10480525_SNP [dm3] 3L_10487425_SNP [dm6]	A	C	1.053e^-5	0.446	INTRON A2bp1
3L	10577011	3L_10577011_SNP [dm3] 3L_10583911_SNP [dm6]	A	T	1.053e^-5	0.446	INTRON A2bp1
3L	10773056	3L_10773056_SNP [dm3] 3L_10779956_SNP [dm6]	T	A	1.053e^-5	0.446	INTERGENIC
3L	10773058	3L_10773058_SNP [dm3] 3L_10779958_SNP [dm6]	G	A	1.053e^-5	0.446	INTERGENIC
3L	10773066	3L_10773066_SNP [dm3] 3L_10779966_SNP [dm6]	G	A	1.053e^-5	0.446	INTERGENIC
3L	11075280	3L_11075280_SNP [dm3] 3L_11082180_SNP [dm6]	A	G	1.053e^-5	0.446	SYNONYMOUS_CODING JIL-1	TF binding site mE1_TFBS_cad
3L	11077228	3L_11077228_SNP [dm3] 3L_11084128_SNP [dm6]	G	T	1.053e^-5	0.446	INTRON JIL-1	TF binding site BDTNP1_TFBS_dl
3L	1127638	3L_1127638_SNP [dm3] 3L_1127638_SNP [dm6]	T	C	1.053e^-5	0.446	INTERGENIC	regulatory region REDfly_CRMs
3L	1127646	3L_1127646_SNP [dm3] 3L_1127646_SNP [dm6]	C	A	1.053e^-5	0.446	INTERGENIC	regulatory region REDfly_CRMs
3L	12333662	3L_12333662_SNP [dm3] 3L_12340562_SNP [dm6]	G	A	1.053e^-5	0.446	INTRON CrzR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13330208	3L_13330208_SNP [dm3] 3L_13337108_SNP [dm6]	A	T	1.053e^-5	0.446	INTERGENIC
3L	19266784	3L_19266784_SNP [dm3] 3L_19273684_SNP [dm6]	C	T	1.053e^-5	0.446	NON_SYNONYMOUS_CODING CG14085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19272904	3L_19272904_SNP [dm3] 3L_19279804_SNP [dm6]	C	A	1.053e^-5	0.446	NON_SYNONYMOUS_CODING CG14086 DOWNSTREAM CG14089
3L	3266935	3L_3266935_SNP [dm3] 3L_3266935_SNP [dm6]	T	C	1.053e^-5	0.446	INTRON ckd	TF binding site BDTNP1_TFBS_dl
3L	3547740	3L_3547740_SNP [dm3] 3L_3547740_SNP [dm6]	A	C	1.053e^-5	0.446	INTRON Eip63E
3R	14705310	3R_14705310_SNP [dm3] 3R_18879588_SNP [dm6]	C	T	1.053e^-5	0.446	INTERGENIC
3R	18693950	3R_18693950_SNP [dm3] 3R_22868228_SNP [dm6]	T	C	1.053e^-5	0.446	INTERGENIC
3R	3811152	3R_3811152_SNP [dm3] 3R_7985430_SNP [dm6]	T	C	1.053e^-5	0.446	INTRON CG2781
3R	9750604	3R_9750604_SNP [dm3] 3R_13924882_SNP [dm6]	C	T	1.053e^-5	0.446	INTERGENIC
3R	9750641	3R_9750641_SNP [dm3] 3R_13924919_SNP [dm6]	T	C	1.053e^-5	0.446	INTERGENIC
3R	9750708	3R_9750708_SNP [dm3] 3R_13924986_SNP [dm6]	A	T	1.053e^-5	0.446	INTERGENIC
3R	9750714	3R_9750714_SNP [dm3] 3R_13924992_SNP [dm6]	A	C	1.053e^-5	0.446	INTERGENIC
X	10028165	X_10028165_DEL [dm3] X_10134132_DEL [dm6]	AA	A	1.053e^-5	0.446	INTRON CR44894 & 1 other
2R	7612908	2R_7612908_SNP [dm3] 2R_11725403_SNP [dm6]	G	A	1.578e^-5	0.446	SYNONYMOUS_CODING pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	16674683	3L_16674683_SNP [dm3] 3L_16681583_SNP [dm6]	A	G	1.952e^-5	0.446	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15868393	2R_15868393_SNP [dm3] 2R_19980888_SNP [dm6]	G	T	2.038e^-5	0.446	UTR_5_PRIME CG8654 UPSTREAM CG8654 INTRON CG8654
2R	6058423	2R_6058423_SNP [dm3] 2R_10170918_SNP [dm6]	C	T	2.038e^-5	0.446	INTRON KCNQ
3L	10691025	3L_10691025_SNP [dm3] 3L_10697925_SNP [dm6]	A	C	2.526e^-5	0.446	INTERGENIC
3R	27500827	3R_27500827_SNP [dm3] 3R_31675105_SNP [dm6]	G	A	2.526e^-5	0.446	SYNONYMOUS_CODING CG1815
3R	7188310	3R_7188310_DEL [dm3] 3R_11362588_DEL [dm6]	GGGCGAAGTAT...	G	2.526e^-5	0.446	INTRON pros	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19377411	2R_19377411_SNP [dm3] 2R_23489888_SNP [dm6]	T	G	3.685e^-5	0.446	SYNONYMOUS_CODING CG43795	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	17157707	3L_17157707_SNP [dm3] 3L_17164607_SNP [dm6]	A	G	3.685e^-5	0.446	INTRON Rbp6
3L	17157749	3L_17157749_SNP [dm3] 3L_17164649_SNP [dm6]	T	A	3.685e^-5	0.446	INTRON Rbp6
3L	5367044	3L_5367044_SNP [dm3] 3L_5373944_SNP [dm6]	C	T	3.685e^-5	0.446	INTERGENIC
3R	25506690	3R_25506690_SNP [dm3] 3R_29680968_SNP [dm6]	G	C	3.685e^-5	0.446	SYNONYMOUS_CODING CG7582 DOWNSTREAM Cap-D2	TF binding site mE1_TFBS_cad
2R	12171636	2R_12171636_SNP [dm3] 2R_16284131_SNP [dm6]	G	A	3.715e^-5	0.446	SYNONYMOUS_CODING CG9068	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	13834316	2R_13834316_SNP [dm3] 2R_17946811_SNP [dm6]	G	T	3.715e^-5	0.446	INTERGENIC
2R	13834360	2R_13834360_SNP [dm3] 2R_17946855_SNP [dm6]	A	T	3.715e^-5	0.446	INTERGENIC
2R	13834364	2R_13834364_SNP [dm3] 2R_17946859_SNP [dm6]	T	A	3.715e^-5	0.446	INTERGENIC
2R	13834381	2R_13834381_SNP [dm3] 2R_17946876_SNP [dm6]	T	C	3.715e^-5	0.446	INTERGENIC
2R	14093736	2R_14093736_SNP [dm3] 2R_18206231_SNP [dm6]	G	A	3.715e^-5	0.446	INTERGENIC
2R	14093832	2R_14093832_SNP [dm3] 2R_18206327_SNP [dm6]	G	C	3.715e^-5	0.446	INTERGENIC
2R	15869441	2R_15869441_SNP [dm3] 2R_19981936_SNP [dm6]	G	A	3.715e^-5	0.446	UPSTREAM CG8654 INTRON CG8654	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	17022463	2R_17022463_SNP [dm3] 2R_21134958_SNP [dm6]	T	C	3.715e^-5	0.446	INTRON Magi	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17837322	2R_17837322_INS [dm3] 2R_21949817_INS [dm6]	C	CCG	3.715e^-5	0.446	INTERGENIC
2R	18993376	2R_18993376_SNP [dm3] 2R_23105853_SNP [dm6]	C	T	3.715e^-5	0.446	UPSTREAM Gr59d INTERGENIC
2R	18993855	2R_18993855_SNP [dm3] 2R_23106332_SNP [dm6]	A	C	3.715e^-5	0.446	INTERGENIC
2R	19647732	2R_19647732_SNP [dm3] 2R_23760209_SNP [dm6]	A	T	3.715e^-5	0.446	INTRON CG9850	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	8520177	2R_8520177_SNP [dm3] 2R_12632672_SNP [dm6]	C	T	3.715e^-5	0.446	UPSTREAM CG33792 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2R	8520198	2R_8520198_SNP [dm3] 2R_12632693_SNP [dm6]	C	A	3.715e^-5	0.446	NON_SYNONYMOUS_CODING CG33792 UPSTREAM muskelin & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2R	8520254	2R_8520254_SNP [dm3] 2R_12632749_SNP [dm6]	A	G	3.715e^-5	0.446	UPSTREAM muskelin & 1 other INTRON CG33792	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2R	8520256	2R_8520256_SNP [dm3] 2R_12632751_SNP [dm6]	A	T	3.715e^-5	0.446	UPSTREAM muskelin & 1 other INTRON CG33792	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2R	8520263	2R_8520263_SNP [dm3] 2R_12632758_SNP [dm6]	C	T	3.715e^-5	0.446	UPSTREAM muskelin & 1 other INTRON CG33792	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2R	8527164	2R_8527164_SNP [dm3] 2R_12639659_SNP [dm6]	T	C	3.715e^-5	0.446	SYNONYMOUS_CODING Iswi	TF binding site mE1_TFBS_cad
2R	9538817	2R_9538817_SNP [dm3] 2R_13651312_SNP [dm6]	T	C	3.715e^-5	0.446	INTRON fas
2R	9937930	2R_9937930_SNP [dm3] 2R_14050425_SNP [dm6]	T	A	3.715e^-5	0.446	INTRON mam
3L	10438667	3L_10438667_SNP [dm3] 3L_10445567_SNP [dm6]	C	G	3.715e^-5	0.446	INTERGENIC
3L	10479306	3L_10479306_SNP [dm3] 3L_10486206_SNP [dm6]	A	G	3.715e^-5	0.446	INTRON A2bp1
3L	10479314	3L_10479314_INS [dm3] 3L_10486214_INS [dm6]	A	ACTAT	3.715e^-5	0.446	INTRON A2bp1
3L	10479340	3L_10479340_SNP [dm3] 3L_10486240_SNP [dm6]	G	C	3.715e^-5	0.446	INTRON A2bp1
3L	10479345	3L_10479345_SNP [dm3] 3L_10486245_SNP [dm6]	G	T	3.715e^-5	0.446	INTRON A2bp1
3L	10479348	3L_10479348_SNP [dm3] 3L_10486248_SNP [dm6]	T	C	3.715e^-5	0.446	INTRON A2bp1
3L	10479556	3L_10479556_SNP [dm3] 3L_10486456_SNP [dm6]	A	G	3.715e^-5	0.446	INTRON A2bp1
3L	10479559	3L_10479559_SNP [dm3] 3L_10486459_SNP [dm6]	A	T	3.715e^-5	0.446	INTRON A2bp1
3L	10479589	3L_10479589_SNP [dm3] 3L_10486489_SNP [dm6]	A	T	3.715e^-5	0.446	INTRON A2bp1
3L	10479590	3L_10479590_SNP [dm3] 3L_10486490_SNP [dm6]	G	T	3.715e^-5	0.446	INTRON A2bp1
3L	10479595	3L_10479595_SNP [dm3] 3L_10486495_SNP [dm6]	G	T	3.715e^-5	0.446	INTRON A2bp1
3L	10479601	3L_10479601_SNP [dm3] 3L_10486501_SNP [dm6]	T	A	3.715e^-5	0.446	INTRON A2bp1
3L	10479615	3L_10479615_SNP [dm3] 3L_10486515_SNP [dm6]	T	C	3.715e^-5	0.446	INTRON A2bp1
3L	10479616	3L_10479616_SNP [dm3] 3L_10486516_SNP [dm6]	G	A	3.715e^-5	0.446	INTRON A2bp1
3L	10479652	3L_10479652_SNP [dm3] 3L_10486552_SNP [dm6]	C	T	3.715e^-5	0.446	INTRON A2bp1
3L	10963779	3L_10963779_SNP [dm3] 3L_10970679_SNP [dm6]	C	T	3.715e^-5	0.446	INTERGENIC
3L	11075076	3L_11075076_SNP [dm3] 3L_11081976_SNP [dm6]	T	A	3.715e^-5	0.446	INTRON JIL-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11075283	3L_11075283_SNP [dm3] 3L_11082183_SNP [dm6]	G	A	3.715e^-5	0.446	SYNONYMOUS_CODING JIL-1	TF binding site mE1_TFBS_cad
3L	11076442	3L_11076442_SNP [dm3] 3L_11083342_SNP [dm6]	C	A	3.715e^-5	0.446	SPLICE_SITE_REGION JIL-1 INTRON JIL-1	TF binding site mE1_TFBS_cad
3L	11076450	3L_11076450_SNP [dm3] 3L_11083350_SNP [dm6]	C	A	3.715e^-5	0.446	INTRON JIL-1	TF binding site mE1_TFBS_cad
3L	11076494	3L_11076494_SNP [dm3] 3L_11083394_SNP [dm6]	A	G	3.715e^-5	0.446	SPLICE_SITE_REGION JIL-1 INTRON JIL-1	TF binding site mE1_TFBS_cad
3L	11079309	3L_11079309_SNP [dm3] 3L_11086209_SNP [dm6]	C	G	3.715e^-5	0.446	INTRON JIL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11079850	3L_11079850_SNP [dm3] 3L_11086750_SNP [dm6]	G	A	3.715e^-5	0.446	INTRON JIL-1	TF binding site BDTNP1_TFBS_twi
3L	11079961	3L_11079961_SNP [dm3] 3L_11086861_SNP [dm6]	A	T	3.715e^-5	0.446	INTRON JIL-1	TF binding site BDTNP1_TFBS_twi
3L	11079994	3L_11079994_SNP [dm3] 3L_11086894_SNP [dm6]	A	C	3.715e^-5	0.446	INTRON JIL-1	TF binding site BDTNP1_TFBS_twi
3L	11080142	3L_11080142_SNP [dm3] 3L_11087042_SNP [dm6]	C	T	3.715e^-5	0.446	INTRON JIL-1	TF binding site BDTNP1_TFBS_twi
3L	11080144	3L_11080144_DEL [dm3] 3L_11087044_DEL [dm6]	AGAGTTGAGCCTGCTCGA...	A	3.715e^-5	0.446	INTRON JIL-1	TF binding site BDTNP1_TFBS_twi
3L	11081969	3L_11081969_SNP [dm3] 3L_11088869_SNP [dm6]	G	C	3.715e^-5	0.446	INTRON JIL-1
3L	13388053	3L_13388053_SNP [dm3] 3L_13394953_SNP [dm6]	A	T	3.715e^-5	0.446	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	19218565	3L_19218565_SNP [dm3] 3L_19225465_SNP [dm6]	A	C	3.715e^-5	0.446	INTRON fz2
3L	19222164	3L_19222164_SNP [dm3] 3L_19229064_SNP [dm6]	G	T	3.715e^-5	0.446	INTRON fz2 EXON CR43893
3L	19222533	3L_19222533_SNP [dm3] 3L_19229433_SNP [dm6]	T	A	3.715e^-5	0.446	INTRON fz2 EXON CR43893
3L	19222597	3L_19222597_SNP [dm3] 3L_19229497_SNP [dm6]	G	A	3.715e^-5	0.446	INTRON fz2 EXON CR43893
3L	19224104	3L_19224104_SNP [dm3] 3L_19231004_SNP [dm6]	C	T	3.715e^-5	0.446	DOWNSTREAM CR43893 INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	19224397	3L_19224397_SNP [dm3] 3L_19231297_SNP [dm6]	T	A	3.715e^-5	0.446	INTRON fz2	TF binding site BDTNP1_TFBS_dl
3L	19224399	3L_19224399_SNP [dm3] 3L_19231299_SNP [dm6]	T	A	3.715e^-5	0.446	INTRON fz2	TF binding site BDTNP1_TFBS_dl
3L	19224407	3L_19224407_SNP [dm3] 3L_19231307_SNP [dm6]	G	A	3.715e^-5	0.446	INTRON fz2	TF binding site BDTNP1_TFBS_dl
3L	19224413	3L_19224413_INS [dm3] 3L_19231313_INS [dm6]	T	TCTCGG	3.715e^-5	0.446	INTRON fz2	TF binding site BDTNP1_TFBS_dl
3L	19224442	3L_19224442_SNP [dm3] 3L_19231342_SNP [dm6]	T	C	3.715e^-5	0.446	INTRON fz2	TF binding site BDTNP1_TFBS_dl
3L	19224898	3L_19224898_SNP [dm3] 3L_19231798_SNP [dm6]	C	T	3.715e^-5	0.446	INTRON fz2
3L	19225000	3L_19225000_SNP [dm3] 3L_19231900_SNP [dm6]	T	C	3.715e^-5	0.446	INTRON fz2
3L	19235331	3L_19235331_SNP [dm3] 3L_19242231_SNP [dm6]	A	G	3.715e^-5	0.446	INTERGENIC
3L	19254596	3L_19254596_SNP [dm3] 3L_19261496_SNP [dm6]	G	A	3.715e^-5	0.446	UTR_5_PRIME Bet1 UPSTREAM nes DOWNSTREAM CR45210 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19255574	3L_19255574_SNP [dm3] 3L_19262474_SNP [dm6]	T	C	3.715e^-5	0.446	UTR_3_PRIME Max DOWNSTREAM Max & 1 other	TF binding site mE1_TFBS_HSA
3L	19259487	3L_19259487_INS [dm3] 3L_19266387_INS [dm6]	T	TAGAACGAAT	3.715e^-5	0.446	UTR_3_PRIME CG45081 DOWNSTREAM CG9629 INTRON CG9666 & 2 others
3L	19272225	3L_19272225_SNP [dm3] 3L_19279125_SNP [dm6]	T	A	3.715e^-5	0.446	DOWNSTREAM CG14089 INTRON CG14086
3L	19272236	3L_19272236_SNP [dm3] 3L_19279136_SNP [dm6]	A	C	3.715e^-5	0.446	DOWNSTREAM CG14089 INTRON CG14086
3L	19272336	3L_19272336_SNP [dm3] 3L_19279236_SNP [dm6]	A	G	3.715e^-5	0.446	DOWNSTREAM CG14089 INTRON CG14086
3L	19272361	3L_19272361_SNP [dm3] 3L_19279261_SNP [dm6]	T	A	3.715e^-5	0.446	DOWNSTREAM CG14089 INTRON CG14086
3L	19272436	3L_19272436_SNP [dm3] 3L_19279336_SNP [dm6]	T	C	3.715e^-5	0.446	DOWNSTREAM CG14089 INTRON CG14086
3L	19272456	3L_19272456_SNP [dm3] 3L_19279356_SNP [dm6]	C	T	3.715e^-5	0.446	DOWNSTREAM CG14089 INTRON CG14086
3L	7609639	3L_7609639_SNP [dm3] 3L_7616539_SNP [dm6]	A	G	3.715e^-5	0.446	INTRON CG33275
3L	7609670	3L_7609670_SNP [dm3] 3L_7616570_SNP [dm6]	G	A	3.715e^-5	0.446	INTRON CG33275
3R	11235989	3R_11235989_SNP [dm3] 3R_15410267_SNP [dm6]	T	A	3.715e^-5	0.446	UPSTREAM Atx2 INTRON Atx2	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	14800622	3R_14800622_SNP [dm3] 3R_18974900_SNP [dm6]	C	T	3.715e^-5	0.446	INTRON CG42613 & 1 other
3R	4291540	3R_4291540_SNP [dm3] 3R_8465818_SNP [dm6]	A	G	3.715e^-5	0.446	INTRON CG45263	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12594734	X_12594734_SNP [dm3] X_12700701_SNP [dm6]	C	G	3.715e^-5	0.446	INTRON Smr
X	13431592	X_13431592_SNP [dm3] X_13537559_SNP [dm6]	A	C	3.715e^-5	0.446	INTERGENIC
X	13431634	X_13431634_SNP [dm3] X_13537601_SNP [dm6]	T	C	3.715e^-5	0.446	INTERGENIC
X	5485197	X_5485197_SNP [dm3] X_5591164_SNP [dm6]	C	T	3.715e^-5	0.446	INTERGENIC
X	5485365	X_5485365_SNP [dm3] X_5591332_SNP [dm6]	T	G	3.715e^-5	0.446	INTERGENIC
X	5485385	X_5485385_SNP [dm3] X_5591352_SNP [dm6]	A	T	3.715e^-5	0.446	INTERGENIC
X	5485389	X_5485389_DEL [dm3] X_5591356_DEL [dm6]	CAGTTCC	G	3.715e^-5	0.446	INTERGENIC
X	5485403	X_5485403_SNP [dm3] X_5591370_SNP [dm6]	G	C	3.715e^-5	0.446	INTERGENIC
3L	11223939	3L_11223939_SNP [dm3] 3L_11230839_SNP [dm6]	A	G	3.911e^-5	0.459	DOWNSTREAM CR45405 & 1 other INTERGENIC
3L	11223940	3L_11223940_SNP [dm3] 3L_11230840_SNP [dm6]	A	G	3.911e^-5	0.459	DOWNSTREAM CR45405 & 1 other INTERGENIC
3L	7808481	3L_7808481_INS [dm3] 3L_7815381_INS [dm6]	T	TGTCT	3.911e^-5	0.459	UTR_3_PRIME Pdp1
3L	3547646	3L_3547646_SNP [dm3] 3L_3547646_SNP [dm6]	C	T	4.038e^-5	0.47	INTRON Eip63E
3L	10479375	3L_10479375_INS [dm3] 3L_10486275_INS [dm6]	T	TTAACTTTATAATAAATTAA...	4.540e^-5	0.521	INTRON A2bp1
3R	12594465	3R_12594465_SNP [dm3] 3R_16768743_SNP [dm6]	T	A	4.540e^-5	0.521	INTRON bxd	TF binding site mE1_TFBS_Ubx
3L	8661010	3L_8661010_SNP [dm3] 3L_8667910_SNP [dm6]	C	A	5.018e^-5	0.528	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve
X	5517894	X_5517894_SNP [dm3] X_5623861_SNP [dm6]	A	C	5.325e^-5	0.528	NON_SYNONYMOUS_CODING l_1_G0045	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	11223942	3L_11223942_DEL [dm3] 3L_11230842_DEL [dm6]	AA	A	5.345e^-5	0.528	DOWNSTREAM CR45405 & 1 other INTERGENIC
2L	10077630	2L_10077630_INS [dm3] 2L_10077630_INS [dm6]	G	GTCCACGCC	5.386e^-5	0.528	INTRON CG44153	TF binding site mE1_TFBS_cad
2R	17737365	2R_17737365_SNP [dm3] 2R_21849860_SNP [dm6]	T	C	5.487e^-5	0.528	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	6047160	2R_6047160_SNP [dm3] 2R_10159655_SNP [dm6]	G	A	5.487e^-5	0.528	UPSTREAM mlt INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6047303	2R_6047303_SNP [dm3] 2R_10159798_SNP [dm6]	T	C	5.487e^-5	0.528	UPSTREAM mlt INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6047348	2R_6047348_SNP [dm3] 2R_10159843_SNP [dm6]	A	C	5.487e^-5	0.528	UPSTREAM mlt INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6047366	2R_6047366_SNP [dm3] 2R_10159861_SNP [dm6]	G	C	5.487e^-5	0.528	UPSTREAM mlt INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6047490	2R_6047490_SNP [dm3] 2R_10159985_SNP [dm6]	T	C	5.487e^-5	0.528	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6047841	2R_6047841_SNP [dm3] 2R_10160336_SNP [dm6]	T	G	5.487e^-5	0.528	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6047862	2R_6047862_SNP [dm3] 2R_10160357_SNP [dm6]	G	T	5.487e^-5	0.528	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6047882	2R_6047882_SNP [dm3] 2R_10160377_SNP [dm6]	A	G	5.487e^-5	0.528	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6047899	2R_6047899_SNP [dm3] 2R_10160394_SNP [dm6]	T	G	5.487e^-5	0.528	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6047903	2R_6047903_SNP [dm3] 2R_10160398_SNP [dm6]	C	T	5.487e^-5	0.528	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6047931	2R_6047931_SNP [dm3] 2R_10160426_SNP [dm6]	T	A	5.487e^-5	0.528	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6047939	2R_6047939_DEL [dm3] 2R_10160434_DEL [dm6]	AA	A	5.487e^-5	0.528	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6047984	2R_6047984_SNP [dm3] 2R_10160479_SNP [dm6]	T	A	5.487e^-5	0.528	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6047998	2R_6047998_SNP [dm3] 2R_10160493_SNP [dm6]	T	C	5.487e^-5	0.528	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6048001	2R_6048001_SNP [dm3] 2R_10160496_SNP [dm6]	T	C	5.487e^-5	0.528	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6048018	2R_6048018_SNP [dm3] 2R_10160513_SNP [dm6]	T	C	5.487e^-5	0.528	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6048042	2R_6048042_DEL [dm3] 2R_10160537_DEL [dm6]	ACATA	A	5.487e^-5	0.528	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6048056	2R_6048056_SNP [dm3] 2R_10160551_SNP [dm6]	C	A	5.487e^-5	0.528	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6048136	2R_6048136_SNP [dm3] 2R_10160631_SNP [dm6]	G	A	5.487e^-5	0.528	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4338805	3L_4338805_SNP [dm3] 3L_4338805_SNP [dm6]	T	C	5.487e^-5	0.528	INTRON Cip4	TF binding site mE1_TFBS_inv
X	15569398	X_15569398_SNP [dm3] X_15675365_SNP [dm6]	T	A	5.487e^-5	0.528	UPSTREAM CG12708 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	3547681	3L_3547681_SNP [dm3] 3L_3547681_SNP [dm6]	C	G	6.063e^-5	0.571	INTRON Eip63E
3L	3547722	3L_3547722_SNP [dm3] 3L_3547722_SNP [dm6]	T	C	6.063e^-5	0.571	INTRON Eip63E
3L	3547729	3L_3547729_SNP [dm3] 3L_3547729_SNP [dm6]	A	T	6.063e^-5	0.571	INTRON Eip63E
2L	6848450	2L_6848450_SNP [dm3] 2L_6848450_SNP [dm6]	T	A	6.135e^-5	0.571	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	14675870	3L_14675870_SNP [dm3] 3L_14682770_SNP [dm6]	G	T	6.330e^-5	0.571	INTRON ome
3R	24102586	3R_24102586_SNP [dm3] 3R_28276864_SNP [dm6]	A	T	6.330e^-5	0.571	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9750637	3R_9750637_SNP [dm3] 3R_13924915_SNP [dm6]	C	A	6.330e^-5	0.571	INTERGENIC
2L	20935632	2L_20935632_SNP [dm3] 2L_20935632_SNP [dm6]	C	T	6.335e^-5	0.571	INTERGENIC
2R	11854360	2R_11854360_SNP [dm3] 2R_15966855_SNP [dm6]	A	G	6.335e^-5	0.571	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11075058	3L_11075058_SNP [dm3] 3L_11081958_SNP [dm6]	A	G	6.335e^-5	0.571	SPLICE_SITE_REGION JIL-1 INTRON JIL-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19241535	3L_19241535_SNP [dm3] 3L_19248435_SNP [dm6]	A	T	6.335e^-5	0.571	INTERGENIC
3L	19270352	3L_19270352_SNP [dm3] 3L_19277252_SNP [dm6]	G	T	6.698e^-5	0.597	INTRON CG14086
3L	19270356	3L_19270356_SNP [dm3] 3L_19277256_SNP [dm6]	T	C	6.698e^-5	0.597	INTRON CG14086
2R	13253281	2R_13253281_SNP [dm3] 2R_17365776_SNP [dm6]	G	A	7.937e^-5	0.673	DOWNSTREAM mbl INTRON mbl	TF binding site mE1_TFBS_HSA
2R	13254082	2R_13254082_SNP [dm3] 2R_17366577_SNP [dm6]	T	A	7.937e^-5	0.673	INTRON mbl
2R	6576762	2R_6576762_SNP [dm3] 2R_10689257_SNP [dm6]	C	T	7.937e^-5	0.673	INTRON stan
2R	9278912	2R_9278912_SNP [dm3] 2R_13391407_SNP [dm6]	T	C	7.937e^-5	0.673	SYNONYMOUS_CODING CG43691
3R	18990387	3R_18990387_SNP [dm3] 3R_23164665_SNP [dm6]	G	T	7.937e^-5	0.673	INTERGENIC
3R	22073978	3R_22073978_SNP [dm3] 3R_26248256_SNP [dm6]	A	C	7.937e^-5	0.673	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	16130817	X_16130817_SNP [dm3] X_16236784_SNP [dm6]	G	A	7.937e^-5	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	18951569	X_18951569_INS [dm3] X_19057536_INS [dm6]	T	TT	7.937e^-5	0.673	INTRON CG14190
X	5485134	X_5485134_INS [dm3] X_5591101_INS [dm6]	T	TATAAATTGGTT...	7.937e^-5	0.673	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14769519	3R_14769519_DEL [dm3] 3R_18943797_DEL [dm6]	AA	A	8.463e^-5	0.683	INTRON CG42613
2R	11283970	2R_11283970_SNP [dm3] 2R_15396465_SNP [dm6]	A	T	8.632e^-5	0.683	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13461790	2R_13461790_SNP [dm3] 2R_17574285_SNP [dm6]	C	A	8.632e^-5	0.683	DOWNSTREAM CG42239 & 1 other INTRON Rab4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
2R	15950098	2R_15950098_SNP [dm3] 2R_20062593_SNP [dm6]	G	A	8.632e^-5	0.683	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17944488	2R_17944488_SNP [dm3] 2R_22056983_SNP [dm6]	C	G	8.632e^-5	0.683	SYNONYMOUS_CODING CG13500	TF binding site mE1_TFBS_cad
2R	18989376	2R_18989376_SNP [dm3] 2R_23101853_SNP [dm6]	T	C	8.632e^-5	0.683	UPSTREAM CG42703 DOWNSTREAM Gr59c INTERGENIC
2R	6896193	2R_6896193_SNP [dm3] 2R_11008688_SNP [dm6]	A	G	8.632e^-5	0.683	INTRON luna	TF binding site mE1_TFBS_inv
2R	8699269	2R_8699269_SNP [dm3] 2R_12811764_SNP [dm6]	C	T	8.632e^-5	0.683	INTERGENIC
3L	14045785	3L_14045785_SNP [dm3] 3L_14052685_SNP [dm6]	T	C	8.632e^-5	0.683	SYNONYMOUS_CODING CG13484 UPSTREAM CG43986 DOWNSTREAM CG6833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	14045902	3L_14045902_SNP [dm3] 3L_14052802_SNP [dm6]	T	C	8.632e^-5	0.683	SYNONYMOUS_CODING CG13484 UPSTREAM CG43986 & 1 other DOWNSTREAM CG6833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	14046236	3L_14046236_SNP [dm3] 3L_14053136_SNP [dm6]	A	G	8.632e^-5	0.683	UPSTREAM CG43986 & 2 others DOWNSTREAM CG6833 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	14046238	3L_14046238_SNP [dm3] 3L_14053138_SNP [dm6]	A	G	8.632e^-5	0.683	UPSTREAM CG43986 & 2 others DOWNSTREAM CG6833 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	6865436	X_6865436_SNP [dm3] X_6971403_SNP [dm6]	G	A	8.632e^-5	0.683	SYNONYMOUS_CODING CG4586 DOWNSTREAM CG3040	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7072071	2L_7072071_SNP [dm3] 2L_7072071_SNP [dm6]	T	C	9.047e^-5	0.702	INTRON Pvf2
3L	3411695	3L_3411695_SNP [dm3] 3L_3411695_SNP [dm6]	C	T	9.047e^-5	0.702	DOWNSTREAM mir-2282 INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22073385	3R_22073385_SNP [dm3] 3R_26247663_SNP [dm6]	T	A	9.047e^-5	0.702	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	27043026	3R_27043026_SNP [dm3] 3R_31217304_SNP [dm6]	A	G	9.047e^-5	0.702	DOWNSTREAM RNaseP:RNA INTRON CG1746	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15458915	3R_15458915_SNP [dm3] 3R_19633193_SNP [dm6]	G	A	9.245e^-5	0.714	UPSTREAM CG6231 DOWNSTREAM subdued INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13215528	2R_13215528_DEL [dm3] 2R_17328023_DEL [dm6]	TGTAC	T	1.037e^-4	0.774	INTRON mbl	TF binding site BDTNP1_TFBS_dl
2L	15331078	2L_15331078_SNP [dm3] 2L_15331078_SNP [dm6]	T	C	1.062e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15331095	2L_15331095_SNP [dm3] 2L_15331095_SNP [dm6]	C	T	1.062e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15331123	2L_15331123_SNP [dm3] 2L_15331123_SNP [dm6]	G	T	1.062e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15331128	2L_15331128_DEL [dm3] 2L_15331128_DEL [dm6]	AT	A	1.062e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15331141	2L_15331141_SNP [dm3] 2L_15331141_SNP [dm6]	A	G	1.062e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15331154	2L_15331154_SNP [dm3] 2L_15331154_SNP [dm6]	T	A	1.062e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19342144	2L_19342144_INS [dm3] 2L_19342144_INS [dm6]	T	TT	1.062e^-4	0.774	INTRON dnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20934152	2L_20934152_SNP [dm3] 2L_20934152_SNP [dm6]	T	C	1.062e^-4	0.774	UPSTREAM CG9270 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	526839	2L_526839_SNP [dm3] 2L_526839_SNP [dm6]	T	A	1.062e^-4	0.774	INTRON ush	regulatory region REDfly_CRMs
2L	527054	2L_527054_SNP [dm3] 2L_527054_SNP [dm6]	G	T	1.062e^-4	0.774	INTRON ush	regulatory region REDfly_CRMs
2L	527058	2L_527058_SNP [dm3] 2L_527058_SNP [dm6]	G	C	1.062e^-4	0.774	INTRON ush	regulatory region REDfly_CRMs
2L	10623378	2L_10623378_SNP [dm3] 2L_10623378_SNP [dm6]	A	G	1.082e^-4	0.782	INTRON Trim9
2L	10623390	2L_10623390_SNP [dm3] 2L_10623390_SNP [dm6]	A	G	1.082e^-4	0.782	INTRON Trim9
2R	6047973	2R_6047973_SNP [dm3] 2R_10160468_SNP [dm6]	C	T	1.131e^-4	0.809	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6048003	2R_6048003_SNP [dm3] 2R_10160498_SNP [dm6]	A	T	1.131e^-4	0.809	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9920787	3R_9920787_SNP [dm3] 3R_14095065_SNP [dm6]	C	T	1.160e^-4	0.823	INTRON CCHa1
3L	2108223	3L_2108223_SNP [dm3] 3L_2108223_SNP [dm6]	C	T	1.165e^-4	0.823	INTRON sls
2L	22226569	2L_22226569_SNP [dm3] 2L_22226569_SNP [dm6]	C	T	1.167e^-4	0.823	EXON CR12628	transposable element FlyBase
2R	6058187	2R_6058187_SNP [dm3] 2R_10170682_SNP [dm6]	G	T	1.194e^-4	0.839	INTRON KCNQ
3L	4062489	3L_4062489_SNP [dm3] 3L_4062489_SNP [dm6]	A	G	1.260e^-4	0.871	SYNONYMOUS_CODING dib DOWNSTREAM CG18869	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15249128	2R_15249128_SNP [dm3] 2R_19361623_SNP [dm6]	A	G	1.291e^-4	0.871	SYNONYMOUS_CODING CG11961
2R	5986643	2R_5986643_SNP [dm3] 2R_10099138_SNP [dm6]	T	C	1.291e^-4	0.871	SPLICE_SITE_REGION RpLP0-like UPSTREAM 14-3-3zeta DOWNSTREAM Jra INTRON RpLP0-like	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
2R	6056848	2R_6056848_SNP [dm3] 2R_10169343_SNP [dm6]	A	T	1.291e^-4	0.871	INTRON KCNQ	TF binding site mE1_TFBS_HSA
2R	6057664	2R_6057664_DEL [dm3] 2R_10170159_DEL [dm6]	CCTAGGTTTTG...	C	1.291e^-4	0.871	INTRON KCNQ
3L	3536520	3L_3536520_SNP [dm3] 3L_3536520_SNP [dm6]	C	T	1.291e^-4	0.871	INTRON Eip63E
3L	8593040	3L_8593040_SNP [dm3] 3L_8599940_SNP [dm6]	A	G	1.291e^-4	0.871	SYNONYMOUS_CODING Nelf-E DOWNSTREAM CG43078
3L	8593135	3L_8593135_SNP [dm3] 3L_8600035_SNP [dm6]	G	T	1.291e^-4	0.871	UPSTREAM RpL14 DOWNSTREAM CG43078 INTRON Nelf-E
3L	8593243	3L_8593243_SNP [dm3] 3L_8600143_SNP [dm6]	T	C	1.291e^-4	0.871	SYNONYMOUS_CODING Nelf-E UPSTREAM RpL14 DOWNSTREAM CG43078
2R	17939736	2R_17939736_SNP [dm3] 2R_22052231_SNP [dm6]	T	A	1.390e^-4	0.89	INTERGENIC
3L	11080184	3L_11080184_INS [dm3] 3L_11087084_INS [dm6]	T	TT	1.390e^-4	0.89	INTRON JIL-1
3L	19218504	3L_19218504_SNP [dm3] 3L_19225404_SNP [dm6]	C	G	1.390e^-4	0.89	INTRON fz2
X	7525700	X_7525700_SNP [dm3] X_7631667_SNP [dm6]	C	G	1.432e^-4	0.89	UPSTREAM ct INTRON ct	TF binding site BDTNP1_TFBS_slp1
2L	1481460	2L_1481460_SNP [dm3] 2L_1481460_SNP [dm6]	T	A	1.532e^-4	0.89	INTERGENIC
2L	1552198	2L_1552198_SNP [dm3] 2L_1552198_SNP [dm6]	A	G	1.532e^-4	0.89	INTERGENIC
2L	2923720	2L_2923720_SNP [dm3] 2L_2923720_SNP [dm6]	T	C	1.593e^-4	0.89	INTRON lilli
2L	2923735	2L_2923735_SNP [dm3] 2L_2923735_SNP [dm6]	A	G	1.593e^-4	0.89	INTRON lilli
2L	4072249	2L_4072249_SNP [dm3] 2L_4072249_SNP [dm6]	A	T	1.593e^-4	0.89	INTRON ed
3R	17180594	3R_17180594_SNP [dm3] 3R_21354872_SNP [dm6]	T	A	1.692e^-4	0.89	DOWNSTREAM mod_mdg4_ & 6 others INTRON mod_mdg4_
3R	20738095	3R_20738095_SNP [dm3] 3R_24912373_SNP [dm6]	T	C	1.692e^-4	0.89	UPSTREAM CR44267 DOWNSTREAM PIG-S INTERGENIC
3R	22749402	3R_22749402_SNP [dm3] 3R_26923680_SNP [dm6]	C	G	1.692e^-4	0.89	INTRON sda
2R	12373304	2R_12373304_SNP [dm3] 2R_16485799_SNP [dm6]	T	C	1.742e^-4	0.89	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12373326	2R_12373326_SNP [dm3] 2R_16485821_SNP [dm6]	T	A	1.742e^-4	0.89	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15203757	2R_15203757_DEL [dm3] 2R_19316252_DEL [dm6]	GTT	A	1.742e^-4	0.89	INTRON Rgk1
3L	1120475	3L_1120475_SNP [dm3] 3L_1120475_SNP [dm6]	C	G	1.742e^-4	0.89	INTERGENIC
2R	6048081	2R_6048081_SNP [dm3] 2R_10160576_SNP [dm6]	T	A	1.778e^-4	0.89	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6048196	2R_6048196_SNP [dm3] 2R_10160691_SNP [dm6]	C	T	1.778e^-4	0.89	INTRON KCNQ	TF binding site mE1_TFBS_HSA
2R	6048214	2R_6048214_SNP [dm3] 2R_10160709_SNP [dm6]	C	T	1.778e^-4	0.89	INTRON KCNQ	TF binding site mE1_TFBS_HSA
2R	6048216	2R_6048216_SNP [dm3] 2R_10160711_SNP [dm6]	T	G	1.778e^-4	0.89	INTRON KCNQ	TF binding site mE1_TFBS_HSA
2L	5561410	2L_5561410_SNP [dm3] 2L_5561410_SNP [dm6]	A	G	1.790e^-4	0.89	SYNONYMOUS_CODING GluRIIB
2L	5864802	2L_5864802_SNP [dm3] 2L_5864802_SNP [dm6]	A	G	1.790e^-4	0.89	INTRON rau	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10560599	2R_10560599_SNP [dm3] 2R_14673094_SNP [dm6]	G	A	1.795e^-4	0.89	INTRON mspo
3L	10479337	3L_10479337_SNP [dm3] 3L_10486237_SNP [dm6]	T	A	1.795e^-4	0.89	INTRON A2bp1
3L	19231961	3L_19231961_SNP [dm3] 3L_19238861_SNP [dm6]	T	G	1.795e^-4	0.89	INTERGENIC
3L	19272397	3L_19272397_SNP [dm3] 3L_19279297_SNP [dm6]	T	A	1.795e^-4	0.89	DOWNSTREAM CG14089 INTRON CG14086
X	4895252	X_4895252_SNP [dm3] X_5001219_SNP [dm6]	G	A	1.795e^-4	0.89	INTRON CR44833	regulatory region REDfly_CRMs
2L	1379037	2L_1379037_SNP [dm3] 2L_1379037_SNP [dm6]	T	C	1.841e^-4	0.89	INTERGENIC
2R	7822149	2R_7822149_SNP [dm3] 2R_11934644_SNP [dm6]	G	A	1.841e^-4	0.89	INTERGENIC
3L	8249412	3L_8249412_SNP [dm3] 3L_8256312_SNP [dm6]	G	C	1.841e^-4	0.89	INTRON Dscam4
3L	8249434	3L_8249434_SNP [dm3] 3L_8256334_SNP [dm6]	T	C	1.841e^-4	0.89	INTRON Dscam4
3L	8249436	3L_8249436_SNP [dm3] 3L_8256336_SNP [dm6]	T	C	1.841e^-4	0.89	INTRON Dscam4
3L	8276362	3L_8276362_SNP [dm3] 3L_8283262_SNP [dm6]	A	G	1.841e^-4	0.89	DOWNSTREAM Dscam4 INTRON cert
X	20397978	X_20397978_SNP [dm3] X_20526951_SNP [dm6]	G	C	1.841e^-4	0.89	UPSTREAM CG42579 INTERGENIC
X	20777247	X_20777247_SNP [dm3] X_20906220_SNP [dm6]	G	A	1.841e^-4	0.89	INTRON shakB
3L	10479383	3L_10479383_SNP [dm3] 3L_10486283_SNP [dm6]	A	T	1.906e^-4	0.89	INTRON A2bp1
3L	24206902	3L_24206902_DEL [dm3] 3L_24213802_DEL [dm6]	TTGAG	T	1.908e^-4	0.89	INTRON Snap25
2R	10273889	2R_10273889_SNP [dm3] 2R_14386384_SNP [dm6]	G	A	1.927e^-4	0.89	INTERGENIC
2R	10273896	2R_10273896_SNP [dm3] 2R_14386391_SNP [dm6]	G	T	1.927e^-4	0.89	INTERGENIC
2R	14421773	2R_14421773_SNP [dm3] 2R_18534268_SNP [dm6]	C	T	1.953e^-4	0.89	SYNONYMOUS_CODING CG10924	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	19255364	3L_19255364_DEL [dm3] 3L_19262264_DEL [dm6]	TAAAGTTTTTTCAGCTCGTT...	T	1.953e^-4	0.89	UTR_3_PRIME Bet1 & 1 other DOWNSTREAM Max & 1 other	TF binding site mE1_TFBS_HSA
3R	18214875	3R_18214875_DEL [dm3] 3R_22389153_DEL [dm6]	TTAATTTTGT	T	1.953e^-4	0.89	UTR_5_PRIME CG5379 UPSTREAM CG5379 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	14284791	3R_14284791_SNP [dm3] 3R_18459069_SNP [dm6]	A	T	1.973e^-4	0.89	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17180533	3R_17180533_SNP [dm3] 3R_21354811_SNP [dm6]	A	C	1.973e^-4	0.89	DOWNSTREAM mod_mdg4_ & 6 others INTRON mod_mdg4_
3L	12053332	3L_12053332_SNP [dm3] 3L_12060232_SNP [dm6]	T	C	1.986e^-4	0.89	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	5367039	3L_5367039_SNP [dm3] 3L_5373939_SNP [dm6]	T	A	1.986e^-4	0.89	INTERGENIC
3L	10479799	3L_10479799_DEL [dm3] 3L_10486699_DEL [dm6]	TT	T	1.997e^-4	0.89	INTRON A2bp1
3L	11077459	3L_11077459_SNP [dm3] 3L_11084359_SNP [dm6]	T	C	1.997e^-4	0.89	INTRON JIL-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	19259489	3L_19259489_SNP [dm3] 3L_19266389_SNP [dm6]	A	C	1.997e^-4	0.89	UTR_3_PRIME CG45081 DOWNSTREAM CG9629 INTRON CG9666 & 2 others
3R	18243851	3R_18243851_SNP [dm3] 3R_22418129_SNP [dm6]	C	G	1.997e^-4	0.89	NON_SYNONYMOUS_CODING lqfR DOWNSTREAM lqfR & 1 other
2L	13800025	2L_13800025_SNP [dm3] 2L_13800025_SNP [dm6]	A	G	2.015e^-4	0.89	DOWNSTREAM Sec71 INTERGENIC
3L	14509632	3L_14509632_SNP [dm3] 3L_14516532_SNP [dm6]	T	C	2.031e^-4	0.89	INTRON bbg
2L	13717416	2L_13717416_SNP [dm3] 2L_13717416_SNP [dm6]	G	C	2.041e^-4	0.89	UPSTREAM CG31814 INTERGENIC
2L	9845176	2L_9845176_SNP [dm3] 2L_9845176_SNP [dm6]	A	G	2.095e^-4	0.89	INTRON nAChRalpha6
2R	8525661	2R_8525661_SNP [dm3] 2R_12638156_SNP [dm6]	C	T	2.095e^-4	0.89	SYNONYMOUS_CODING Iswi	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	2627927	X_2627927_SNP [dm3] X_2733894_SNP [dm6]	T	C	2.095e^-4	0.89	SYNONYMOUS_CODING CG2712 DOWNSTREAM crm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19019344	2R_19019344_SNP [dm3] 2R_23131821_SNP [dm6]	C	T	2.118e^-4	0.89	INTERGENIC
2R	19893666	2R_19893666_SNP [dm3] 2R_24006143_SNP [dm6]	G	A	2.118e^-4	0.89	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15016996	3L_15016996_SNP [dm3] 3L_15023896_SNP [dm6]	T	C	2.118e^-4	0.89	UTR_3_PRIME CG32148 INTRON Sytbeta
3L	15017001	3L_15017001_SNP [dm3] 3L_15023901_SNP [dm6]	C	A	2.118e^-4	0.89	UTR_3_PRIME CG32148 INTRON Sytbeta
3L	15017046	3L_15017046_SNP [dm3] 3L_15023946_SNP [dm6]	A	T	2.118e^-4	0.89	UTR_3_PRIME CG32148 INTRON Sytbeta
3L	15017060	3L_15017060_DEL [dm3] 3L_15023960_DEL [dm6]	ATA	A	2.118e^-4	0.89	UTR_3_PRIME CG32148 INTRON Sytbeta
3L	15017065	3L_15017065_SNP [dm3] 3L_15023965_SNP [dm6]	A	C	2.118e^-4	0.89	UTR_3_PRIME CG32148 INTRON Sytbeta
X	10111437	X_10111437_SNP [dm3] X_10217404_SNP [dm6]	A	C	2.118e^-4	0.89	UPSTREAM CR45629 & 1 other DOWNSTREAM CG15308 & 1 other INTERGENIC
2L	12648991	2L_12648991_SNP [dm3] 2L_12648991_SNP [dm6]	T	C	2.180e^-4	0.89	INTERGENIC
2L	12649033	2L_12649033_SNP [dm3] 2L_12649033_SNP [dm6]	A	G	2.180e^-4	0.89	INTERGENIC
2L	19342119	2L_19342119_SNP [dm3] 2L_19342119_SNP [dm6]	C	G	2.180e^-4	0.89	INTRON dnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19342166	2L_19342166_SNP [dm3] 2L_19342166_SNP [dm6]	T	G	2.180e^-4	0.89	INTRON dnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1551591	2L_1551591_SNP [dm3] 2L_1551591_SNP [dm6]	C	T	2.230e^-4	0.89	INTERGENIC
2R	17253942	2R_17253942_SNP [dm3] 2R_21366437_SNP [dm6]	T	C	2.230e^-4	0.89	INTRON cv-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5608111	2R_5608111_SNP [dm3] 2R_9720606_SNP [dm6]	T	C	2.230e^-4	0.89	INTRON sqa
3L	1040054	3L_1040054_SNP [dm3] 3L_1040054_SNP [dm6]	A	G	2.230e^-4	0.89	SYNONYMOUS_CODING bab1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1040066	3L_1040066_SNP [dm3] 3L_1040066_SNP [dm6]	A	G	2.230e^-4	0.89	SYNONYMOUS_CODING bab1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10911335	3L_10911335_SNP [dm3] 3L_10918235_SNP [dm6]	T	A	2.230e^-4	0.89	INTERGENIC
3L	11772972	3L_11772972_SNP [dm3] 3L_11779872_SNP [dm6]	T	C	2.230e^-4	0.89	SYNONYMOUS_CODING CG14131 INTRON Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12878397	3L_12878397_SNP [dm3] 3L_12885297_SNP [dm6]	T	C	2.230e^-4	0.89	SYNONYMOUS_CODING CG14120	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14801874	3L_14801874_SNP [dm3] 3L_14808774_SNP [dm6]	T	C	2.230e^-4	0.89	INTRON CG17839
3L	15046481	3L_15046481_SNP [dm3] 3L_15053381_SNP [dm6]	A	T	2.230e^-4	0.89	UPSTREAM CG13461 & 1 other DOWNSTREAM CG18649 INTRON Sytbeta
3L	15509638	3L_15509638_SNP [dm3] 3L_15516538_SNP [dm6]	C	T	2.230e^-4	0.89	UTR_3_PRIME CG13454 DOWNSTREAM mex1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19195281	3L_19195281_SNP [dm3] 3L_19202181_SNP [dm6]	A	G	2.230e^-4	0.89	INTRON fz2
3L	19244186	3L_19244186_SNP [dm3] 3L_19251086_SNP [dm6]	C	T	2.230e^-4	0.89	INTERGENIC
3L	20012500	3L_20012500_SNP [dm3] 3L_20019400_SNP [dm6]	C	G	2.230e^-4	0.89	NON_SYNONYMOUS_CODING kug	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2198407	3L_2198407_SNP [dm3] 3L_2198407_SNP [dm6]	A	G	2.230e^-4	0.89	DOWNSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	429032	3L_429032_SNP [dm3] 3L_429032_SNP [dm6]	C	A	2.230e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4705120	3L_4705120_SNP [dm3] 3L_4705120_SNP [dm6]	G	T	2.230e^-4	0.89	INTRON RhoGEF64C
3L	7956809	3L_7956809_SNP [dm3] 3L_7963709_SNP [dm6]	C	T	2.230e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
3L	8625658	3L_8625658_SNP [dm3] 3L_8632558_SNP [dm6]	G	A	2.230e^-4	0.89	SYNONYMOUS_CODING Cdc6 INTRON Zasp66
3L	8745771	3L_8745771_SNP [dm3] 3L_8752671_SNP [dm6]	G	A	2.230e^-4	0.89	UPSTREAM Fhos INTERGENIC
3L	9343157	3L_9343157_SNP [dm3] 3L_9350057_SNP [dm6]	A	G	2.230e^-4	0.89	DOWNSTREAM UGP INTRON PGRP-LF
3L	9343164	3L_9343164_SNP [dm3] 3L_9350064_SNP [dm6]	G	A	2.230e^-4	0.89	DOWNSTREAM UGP INTRON PGRP-LF
3L	9343184	3L_9343184_SNP [dm3] 3L_9350084_SNP [dm6]	C	G	2.230e^-4	0.89	DOWNSTREAM UGP INTRON PGRP-LF
3L	9835268	3L_9835268_SNP [dm3] 3L_9842168_SNP [dm6]	G	A	2.230e^-4	0.89	INTRON RasGAP1
3L	9943171	3L_9943171_SNP [dm3] 3L_9950071_SNP [dm6]	A	G	2.230e^-4	0.89	INTRON CG34356
3R	14792137	3R_14792137_SNP [dm3] 3R_18966415_SNP [dm6]	C	G	2.230e^-4	0.89	INTRON CG42613 & 1 other
3R	18396919	3R_18396919_SNP [dm3] 3R_22571197_SNP [dm6]	C	G	2.230e^-4	0.89	INTRON CG33110
3R	18396933	3R_18396933_SNP [dm3] 3R_22571211_SNP [dm6]	A	T	2.230e^-4	0.89	INTRON CG33110
3R	18435694	3R_18435694_SNP [dm3] 3R_22609972_SNP [dm6]	C	T	2.230e^-4	0.89	SYNONYMOUS_CODING CG13843 INTRON CG31156	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20330728	3R_20330728_SNP [dm3] 3R_24505006_SNP [dm6]	G	T	2.230e^-4	0.89	INTERGENIC
3R	21977772	3R_21977772_SNP [dm3] 3R_26152050_SNP [dm6]	G	A	2.230e^-4	0.89	INTERGENIC
3R	25057218	3R_25057218_SNP [dm3] 3R_29231496_SNP [dm6]	A	T	2.230e^-4	0.89	SYNONYMOUS_CODING CG15817	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25217525	3R_25217525_SNP [dm3] 3R_29391803_SNP [dm6]	T	C	2.230e^-4	0.89	INTRON Ptp99A
3R	26430387	3R_26430387_SNP [dm3] 3R_30604665_SNP [dm6]	T	C	2.230e^-4	0.89	NON_SYNONYMOUS_CODING PH4alphaNE3 DOWNSTREAM CG31021
3R	26432329	3R_26432329_SNP [dm3] 3R_30606607_SNP [dm6]	T	A	2.230e^-4	0.89	DOWNSTREAM PH4alphaNE3 INTRON CG31016
3R	26432336	3R_26432336_SNP [dm3] 3R_30606614_SNP [dm6]	T	C	2.230e^-4	0.89	DOWNSTREAM PH4alphaNE3 INTRON CG31016
3R	26432492	3R_26432492_SNP [dm3] 3R_30606770_SNP [dm6]	C	A	2.230e^-4	0.89	SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
3R	26432494	3R_26432494_SNP [dm3] 3R_30606772_SNP [dm6]	G	T	2.230e^-4	0.89	NON_SYNONYMOUS_CODING CG31016 DOWNSTREAM PH4alphaNE3
3R	26677920	3R_26677920_SNP [dm3] 3R_30852198_SNP [dm6]	G	A	2.230e^-4	0.89	UPSTREAM tll INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	26681566	3R_26681566_SNP [dm3] 3R_30855844_SNP [dm6]	G	A	2.230e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	26681580	3R_26681580_SNP [dm3] 3R_30855858_SNP [dm6]	A	G	2.230e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	26681588	3R_26681588_DEL [dm3] 3R_30855866_DEL [dm6]	AACTGCG	A	2.230e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	26681610	3R_26681610_SNP [dm3] 3R_30855888_SNP [dm6]	A	G	2.230e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	26681625	3R_26681625_SNP [dm3] 3R_30855903_SNP [dm6]	G	T	2.230e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4873355	3R_4873355_SNP [dm3] 3R_9047633_SNP [dm6]	T	A	2.230e^-4	0.89	START_GAINED Rel UTR_5_PRIME Rel UPSTREAM Rel INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	9417840	3R_9417840_SNP [dm3] 3R_13592118_SNP [dm6]	T	C	2.230e^-4	0.89	UTR_3_PRIME CG14369
2R	14712670	2R_14712670_DEL [dm3] 2R_18825165_DEL [dm6]	GA	G	2.238e^-4	0.89	INTRON CG15097	TF binding site mE1_TFBS_chinmo
2R	6048184	2R_6048184_SNP [dm3] 2R_10160679_SNP [dm6]	C	G	2.250e^-4	0.89	INTRON KCNQ	TF binding site mE1_TFBS_HSA
3L	4976903	3L_4976903_SNP [dm3] 3L_4976903_SNP [dm6]	T	A	2.250e^-4	0.89	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	4472543	3L_4472543_SNP [dm3] 3L_4472543_SNP [dm6]	G	T	2.404e^-4	0.89	UPSTREAM CG11349 DOWNSTREAM CG32248 INTERGENIC
2R	16392196	2R_16392196_SNP [dm3] 2R_20504691_SNP [dm6]	G	C	2.416e^-4	0.89	SYNONYMOUS_CODING Obp57b UPSTREAM Obp57a DOWNSTREAM Obp57c	regulatory region REDfly_CRMs
2R	18046671	2R_18046671_SNP [dm3] 2R_22159166_SNP [dm6]	C	G	2.416e^-4	0.89	INTRON a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	1645367	3L_1645367_INS [dm3] 3L_1645367_INS [dm6]	T	TTT	2.416e^-4	0.89	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1645388	3L_1645388_SNP [dm3] 3L_1645388_SNP [dm6]	G	A	2.416e^-4	0.89	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1645474	3L_1645474_SNP [dm3] 3L_1645474_SNP [dm6]	T	G	2.416e^-4	0.89	UTR_5_PRIME CG13919 UPSTREAM alphaCOP DOWNSTREAM CG17249	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1645658	3L_1645658_SNP [dm3] 3L_1645658_SNP [dm6]	A	G	2.416e^-4	0.89	SYNONYMOUS_CODING CG13919 UPSTREAM alphaCOP DOWNSTREAM CG17249	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13433253	X_13433253_SNP [dm3] X_13539220_SNP [dm6]	G	A	2.416e^-4	0.89	INTERGENIC
2L	1517103	2L_1517103_SNP [dm3] 2L_1517103_SNP [dm6]	T	C	2.620e^-4	0.89	SYNONYMOUS_CODING CG18132 DOWNSTREAM halo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	1517413	2L_1517413_SNP [dm3] 2L_1517413_SNP [dm6]	A	G	2.620e^-4	0.89	NON_SYNONYMOUS_CODING CG18132 DOWNSTREAM halo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1517426	2L_1517426_SNP [dm3] 2L_1517426_SNP [dm6]	G	A	2.620e^-4	0.89	NON_SYNONYMOUS_CODING CG18132 DOWNSTREAM halo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1517470	2L_1517470_INS [dm3] 2L_1517470_INS [dm6]	T	TTT	2.620e^-4	0.89	UTR_5_PRIME CG18132 DOWNSTREAM halo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1517867	2L_1517867_SNP [dm3] 2L_1517867_SNP [dm6]	G	T	2.620e^-4	0.89	SYNONYMOUS_CODING halo UPSTREAM CG18132	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1518282	2L_1518282_SNP [dm3] 2L_1518282_SNP [dm6]	G	A	2.620e^-4	0.89	UPSTREAM CG18132 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1518415	2L_1518415_DEL [dm3] 2L_1518415_DEL [dm6]	AA	A	2.620e^-4	0.89	UPSTREAM CG18132 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	1518438	2L_1518438_SNP [dm3] 2L_1518438_SNP [dm6]	C	A	2.620e^-4	0.89	UPSTREAM CG18132 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	1518516	2L_1518516_SNP [dm3] 2L_1518516_SNP [dm6]	C	T	2.620e^-4	0.89	UPSTREAM halo INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	1518673	2L_1518673_SNP [dm3] 2L_1518673_SNP [dm6]	C	T	2.620e^-4	0.89	UPSTREAM halo INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	1518684	2L_1518684_SNP [dm3] 2L_1518684_SNP [dm6]	T	A	2.620e^-4	0.89	UPSTREAM halo INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	12031365	2R_12031365_SNP [dm3] 2R_16143860_SNP [dm6]	T	C	2.620e^-4	0.89	SYNONYMOUS_CODING Aats-cys DOWNSTREAM CG30094	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19222560	3L_19222560_SNP [dm3] 3L_19229460_SNP [dm6]	T	C	2.620e^-4	0.89	INTRON fz2 EXON CR43893
3R	24657297	3R_24657297_SNP [dm3] 3R_28831575_SNP [dm6]	C	T	2.620e^-4	0.89	UPSTREAM WASp DOWNSTREAM Apc INTRON WASp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	14950355	3L_14950355_SNP [dm3] 3L_14957255_SNP [dm6]	A	G	2.683e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20465701	X_20465701_SNP [dm3] X_20594674_SNP [dm6]	C	G	2.703e^-4	0.89	INTRON RunxA
3R	27560074	3R_27560074_SNP [dm3] 3R_31734352_SNP [dm6]	C	A	2.724e^-4	0.89	SYNONYMOUS_CODING ttk	TF binding site mE1_TFBS_chinmo
2R	16422187	2R_16422187_SNP [dm3] 2R_20534682_SNP [dm6]	G	A	2.745e^-4	0.89	SYNONYMOUS_CODING CG18067 DOWNSTREAM CG30154
2R	6046528	2R_6046528_SNP [dm3] 2R_10159023_SNP [dm6]	T	G	2.745e^-4	0.89	UPSTREAM mlt INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	6046593	2R_6046593_SNP [dm3] 2R_10159088_SNP [dm6]	A	T	2.745e^-4	0.89	UPSTREAM mlt INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	13341327	3L_13341327_SNP [dm3] 3L_13348227_SNP [dm6]	A	C	2.745e^-4	0.89	UPSTREAM CG17687 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17147368	3L_17147368_SNP [dm3] 3L_17154268_SNP [dm6]	A	G	2.745e^-4	0.89	INTRON Rbp6	TF binding site mE1_TFBS_HSA
3L	17147377	3L_17147377_SNP [dm3] 3L_17154277_SNP [dm6]	G	A	2.745e^-4	0.89	INTRON Rbp6	TF binding site mE1_TFBS_HSA
3L	19253383	3L_19253383_DEL [dm3] 3L_19260283_DEL [dm6]	GG	G	2.745e^-4	0.89	INTRON nes EXON CR45210	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	4338219	3L_4338219_SNP [dm3] 3L_4338219_SNP [dm6]	A	G	2.745e^-4	0.89	INTRON Cip4	TF binding site mE1_TFBS_inv
3L	7609513	3L_7609513_SNP [dm3] 3L_7616413_SNP [dm6]	G	A	2.745e^-4	0.89	INTRON CG33275
3R	11393074	3R_11393074_SNP [dm3] 3R_15567352_SNP [dm6]	A	G	2.745e^-4	0.89	INTERGENIC
3R	27066507	3R_27066507_SNP [dm3] 3R_31240785_SNP [dm6]	A	C	2.745e^-4	0.89	INTRON qless
X	4046862	X_4046862_SNP [dm3] X_4152829_SNP [dm6]	A	T	2.745e^-4	0.89	INTRON Fas2
X	8405227	X_8405227_SNP [dm3] X_8511194_SNP [dm6]	C	G	2.745e^-4	0.89	UTR_5_PRIME CG33181 INTRON CG33181	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15577809	2R_15577809_SNP [dm3] 2R_19690304_SNP [dm6]	T	A	2.764e^-4	0.89	UPSTREAM CG15126 INTERGENIC
2R	15577810	2R_15577810_SNP [dm3] 2R_19690305_SNP [dm6]	C	T	2.764e^-4	0.89	UPSTREAM CG15126 INTERGENIC
2R	15577860	2R_15577860_SNP [dm3] 2R_19690355_SNP [dm6]	G	T	2.764e^-4	0.89	UPSTREAM CG15126 INTERGENIC
3L	14571800	3L_14571800_SNP [dm3] 3L_14578700_SNP [dm6]	T	C	2.764e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	14571812	3L_14571812_DEL [dm3] 3L_14578712_DEL [dm6]	CTACATACAATG...	T	2.764e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	14571826	3L_14571826_SNP [dm3] 3L_14578726_SNP [dm6]	C	T	2.764e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	18973028	2R_18973028_SNP [dm3] 2R_23085505_SNP [dm6]	G	A	2.795e^-4	0.89	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12670307	2L_12670307_SNP [dm3] 2L_12670307_SNP [dm6]	T	C	2.797e^-4	0.89	UPSTREAM CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6048499	2R_6048499_SNP [dm3] 2R_10160994_SNP [dm6]	G	T	3.035e^-4	0.89	INTRON KCNQ	TF binding site mE1_TFBS_HSA
2R	6048602	2R_6048602_SNP [dm3] 2R_10161097_SNP [dm6]	C	T	3.035e^-4	0.89	INTRON KCNQ	TF binding site mE1_TFBS_HSA
3R	14061263	3R_14061263_SNP [dm3] 3R_18235541_SNP [dm6]	C	T	3.035e^-4	0.89	UPSTREAM repo INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9278932	2R_9278932_SNP [dm3] 2R_13391427_SNP [dm6]	C	G	3.054e^-4	0.89	NON_SYNONYMOUS_CODING CG43691
X	18951582	X_18951582_SNP [dm3] X_19057549_SNP [dm6]	A	C	3.054e^-4	0.89	INTRON CG14190
3L	4657337	3L_4657337_DEL [dm3] 3L_4657337_DEL [dm6]	GCAGAGGCACA...	G	3.068e^-4	0.89	INTRON axo	TF binding site mE1_TFBS_inv
2R	13458838	2R_13458838_SNP [dm3] 2R_17571333_SNP [dm6]	G	A	3.137e^-4	0.89	SYNONYMOUS_CODING POSH DOWNSTREAM CG14482
3L	11076619	3L_11076619_SNP [dm3] 3L_11083519_SNP [dm6]	G	T	3.155e^-4	0.89	INTRON JIL-1	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
2R	6046459	2R_6046459_DEL [dm3] 2R_10158954_DEL [dm6]	TGAAACA	GT	3.302e^-4	0.89	UPSTREAM mlt INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	8944589	2R_8944589_SNP [dm3] 2R_13057084_SNP [dm6]	G	A	3.302e^-4	0.89	UTR_3_PRIME Drl-2
3R	14284715	3R_14284715_SNP [dm3] 3R_18458993_SNP [dm6]	T	G	3.302e^-4	0.89	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	19217884	3L_19217884_SNP [dm3] 3L_19224784_SNP [dm6]	C	T	3.313e^-4	0.89	INTRON fz2
2L	14772291	2L_14772291_SNP [dm3] 2L_14772291_SNP [dm6]	T	C	3.425e^-4	0.89	INTERGENIC
2L	14772293	2L_14772293_SNP [dm3] 2L_14772293_SNP [dm6]	G	C	3.425e^-4	0.89	INTERGENIC
2L	2565172	2L_2565172_SNP [dm3] 2L_2565172_SNP [dm6]	C	T	3.425e^-4	0.89	SYNONYMOUS_CODING Cyp309a2 UPSTREAM Cyp309a1
2L	2565175	2L_2565175_SNP [dm3] 2L_2565175_SNP [dm6]	T	G	3.425e^-4	0.89	SYNONYMOUS_CODING Cyp309a2 UPSTREAM Cyp309a1
2R	10630395	2R_10630395_SNP [dm3] 2R_14742890_SNP [dm6]	G	A	3.425e^-4	0.89	INTRON CG12858
2R	13426181	2R_13426181_SNP [dm3] 2R_17538676_SNP [dm6]	A	C	3.425e^-4	0.89	UPSTREAM CG43370 INTRON eIF3-S9	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	13767588	2R_13767588_SNP [dm3] 2R_17880083_SNP [dm6]	A	G	3.425e^-4	0.89	UPSTREAM CG30325 DOWNSTREAM CG30110 INTRON Elk
2R	13767594	2R_13767594_SNP [dm3] 2R_17880089_SNP [dm6]	T	C	3.425e^-4	0.89	UPSTREAM CG30325 DOWNSTREAM CG30110 INTRON Elk
2R	15399514	2R_15399514_SNP [dm3] 2R_19512009_SNP [dm6]	G	A	3.425e^-4	0.89	SYNONYMOUS_CODING Ir56d DOWNSTREAM Ir56c	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16287048	2R_16287048_SNP [dm3] 2R_20399543_SNP [dm6]	G	C	3.425e^-4	0.89	INTERGENIC
2R	16287096	2R_16287096_SNP [dm3] 2R_20399591_SNP [dm6]	G	A	3.425e^-4	0.89	INTERGENIC
2R	16287099	2R_16287099_INS [dm3] 2R_20399594_INS [dm6]	G	GG	3.425e^-4	0.89	INTERGENIC
2R	16287102	2R_16287102_SNP [dm3] 2R_20399597_SNP [dm6]	T	C	3.425e^-4	0.89	INTERGENIC
2R	16287104	2R_16287104_DEL [dm3] 2R_20399599_DEL [dm6]	TGTATG	CA	3.425e^-4	0.89	INTERGENIC
2R	16287118	2R_16287118_SNP [dm3] 2R_20399613_SNP [dm6]	T	C	3.425e^-4	0.89	INTERGENIC
2R	16287121	2R_16287121_INS [dm3] 2R_20399616_INS [dm6]	T	TAGCA	3.425e^-4	0.89	INTERGENIC
2R	16287124	2R_16287124_SNP [dm3] 2R_20399619_SNP [dm6]	T	C	3.425e^-4	0.89	INTERGENIC
2R	16287131	2R_16287131_SNP [dm3] 2R_20399626_SNP [dm6]	C	T	3.425e^-4	0.89	INTERGENIC
2R	16287140	2R_16287140_SNP [dm3] 2R_20399635_SNP [dm6]	T	C	3.425e^-4	0.89	INTERGENIC
2R	16655343	2R_16655343_SNP [dm3] 2R_20767838_SNP [dm6]	A	T	3.425e^-4	0.89	EXON CR44665
2R	17530774	2R_17530774_SNP [dm3] 2R_21643269_SNP [dm6]	A	G	3.425e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17530785	2R_17530785_DEL [dm3] 2R_21643280_DEL [dm6]	CATCCATAC	C	3.425e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17836922	2R_17836922_SNP [dm3] 2R_21949417_SNP [dm6]	T	A	3.425e^-4	0.89	INTERGENIC
2R	18993769	2R_18993769_SNP [dm3] 2R_23106246_SNP [dm6]	C	G	3.425e^-4	0.89	INTERGENIC
2R	19648617	2R_19648617_SNP [dm3] 2R_23761094_SNP [dm6]	G	A	3.425e^-4	0.89	INTRON CG9850
2R	19892201	2R_19892201_SNP [dm3] 2R_24004678_SNP [dm6]	C	G	3.425e^-4	0.89	INTRON Unc-89
2R	20099021	2R_20099021_SNP [dm3] 2R_24211498_SNP [dm6]	C	T	3.425e^-4	0.89	DOWNSTREAM CG30419 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	5685003	2R_5685003_SNP [dm3] 2R_9797498_SNP [dm6]	T	G	3.425e^-4	0.89	SYNONYMOUS_CODING CG1698 INTRON CG1688	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	5699811	2R_5699811_SNP [dm3] 2R_9812306_SNP [dm6]	G	C	3.425e^-4	0.89	INTRON CG1648
2R	8583787	2R_8583787_SNP [dm3] 2R_12696282_SNP [dm6]	G	A	3.425e^-4	0.89	INTERGENIC
2R	8585173	2R_8585173_SNP [dm3] 2R_12697668_SNP [dm6]	A	T	3.425e^-4	0.89	INTERGENIC
2R	9273924	2R_9273924_SNP [dm3] 2R_13386419_SNP [dm6]	A	G	3.425e^-4	0.89	INTERGENIC
2R	9388715	2R_9388715_SNP [dm3] 2R_13501210_SNP [dm6]	A	G	3.425e^-4	0.89	UPSTREAM mars INTRON drk & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9388732	2R_9388732_SNP [dm3] 2R_13501227_SNP [dm6]	T	A	3.425e^-4	0.89	UPSTREAM mars INTRON drk & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10325705	3L_10325705_SNP [dm3] 3L_10332605_SNP [dm6]	A	T	3.425e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
3L	11051924	3L_11051924_SNP [dm3] 3L_11058824_SNP [dm6]	G	T	3.425e^-4	0.89	SYNONYMOUS_CODING CG7888 DOWNSTREAM CG6321	TF binding site mE1_TFBS_cad
3L	11051927	3L_11051927_SNP [dm3] 3L_11058827_SNP [dm6]	T	C	3.425e^-4	0.89	SYNONYMOUS_CODING CG7888 DOWNSTREAM CG6321	TF binding site mE1_TFBS_cad
3L	1847319	3L_1847319_SNP [dm3] 3L_1847319_SNP [dm6]	A	T	3.425e^-4	0.89	INTERGENIC
3L	19211719	3L_19211719_SNP [dm3] 3L_19218619_SNP [dm6]	T	C	3.425e^-4	0.89	INTRON fz2
3L	19212516	3L_19212516_SNP [dm3] 3L_19219416_SNP [dm6]	T	A	3.425e^-4	0.89	INTRON fz2
3L	19214394	3L_19214394_SNP [dm3] 3L_19221294_SNP [dm6]	A	G	3.425e^-4	0.89	INTRON fz2
3L	19215624	3L_19215624_SNP [dm3] 3L_19222524_SNP [dm6]	G	A	3.425e^-4	0.89	INTRON fz2
3L	19217741	3L_19217741_SNP [dm3] 3L_19224641_SNP [dm6]	A	G	3.425e^-4	0.89	INTRON fz2
3L	19217969	3L_19217969_SNP [dm3] 3L_19224869_SNP [dm6]	G	C	3.425e^-4	0.89	INTRON fz2
3L	19218320	3L_19218320_SNP [dm3] 3L_19225220_SNP [dm6]	C	T	3.425e^-4	0.89	INTRON fz2
3L	19220547	3L_19220547_SNP [dm3] 3L_19227447_SNP [dm6]	T	C	3.425e^-4	0.89	INTRON fz2
3L	19221112	3L_19221112_SNP [dm3] 3L_19228012_SNP [dm6]	C	A	3.425e^-4	0.89	INTRON fz2
3L	19223935	3L_19223935_DEL [dm3] 3L_19230835_DEL [dm6]	CC	C	3.425e^-4	0.89	DOWNSTREAM CR43893 INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	19224862	3L_19224862_SNP [dm3] 3L_19231762_SNP [dm6]	G	T	3.425e^-4	0.89	INTRON fz2
3L	19225148	3L_19225148_SNP [dm3] 3L_19232048_SNP [dm6]	A	G	3.425e^-4	0.89	INTRON fz2
3L	19226921	3L_19226921_SNP [dm3] 3L_19233821_SNP [dm6]	A	G	3.425e^-4	0.89	INTRON fz2
3L	19230445	3L_19230445_SNP [dm3] 3L_19237345_SNP [dm6]	A	T	3.425e^-4	0.89	DOWNSTREAM CG33647 INTERGENIC
3L	19230899	3L_19230899_SNP [dm3] 3L_19237799_SNP [dm6]	C	T	3.425e^-4	0.89	DOWNSTREAM CG33647 INTERGENIC
3L	19231414	3L_19231414_SNP [dm3] 3L_19238314_SNP [dm6]	G	A	3.425e^-4	0.89	INTERGENIC
3L	19236311	3L_19236311_SNP [dm3] 3L_19243211_SNP [dm6]	T	A	3.425e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
3L	19237259	3L_19237259_SNP [dm3] 3L_19244159_SNP [dm6]	C	T	3.425e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
3L	19237260	3L_19237260_DEL [dm3] 3L_19244160_DEL [dm6]	GAGAGCCACAAA...	G	3.425e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
3L	19237274	3L_19237274_DEL [dm3] 3L_19244174_DEL [dm6]	GCGGCA	G	3.425e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
3L	19237281	3L_19237281_DEL [dm3] 3L_19244181_DEL [dm6]	AATGCATTTT	A	3.425e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
3L	19237364	3L_19237364_SNP [dm3] 3L_19244264_SNP [dm6]	T	C	3.425e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
3L	19237687	3L_19237687_SNP [dm3] 3L_19244587_SNP [dm6]	C	T	3.425e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
3L	19238484	3L_19238484_SNP [dm3] 3L_19245384_SNP [dm6]	G	C	3.425e^-4	0.89	INTERGENIC
3L	19238486	3L_19238486_INS [dm3] 3L_19245386_INS [dm6]	CA	TTT	3.425e^-4	0.89	INTERGENIC
3L	19239661	3L_19239661_SNP [dm3] 3L_19246561_SNP [dm6]	G	T	3.425e^-4	0.89	INTERGENIC
3L	19240395	3L_19240395_SNP [dm3] 3L_19247295_SNP [dm6]	G	A	3.425e^-4	0.89	INTERGENIC
3L	19241195	3L_19241195_SNP [dm3] 3L_19248095_SNP [dm6]	A	T	3.425e^-4	0.89	INTERGENIC
3L	19241317	3L_19241317_SNP [dm3] 3L_19248217_SNP [dm6]	T	C	3.425e^-4	0.89	INTERGENIC
3L	19241602	3L_19241602_SNP [dm3] 3L_19248502_SNP [dm6]	C	T	3.425e^-4	0.89	INTERGENIC
3L	19243543	3L_19243543_SNP [dm3] 3L_19250443_SNP [dm6]	A	C	3.425e^-4	0.89	INTERGENIC
3L	19244135	3L_19244135_SNP [dm3] 3L_19251035_SNP [dm6]	A	G	3.425e^-4	0.89	INTERGENIC
3L	19247012	3L_19247012_SNP [dm3] 3L_19253912_SNP [dm6]	G	A	3.425e^-4	0.89	UTR_3_PRIME mRpL21 DOWNSTREAM mRpL21
3L	19250602	3L_19250602_SNP [dm3] 3L_19257502_SNP [dm6]	G	T	3.425e^-4	0.89	UTR_3_PRIME nes DOWNSTREAM nes & 1 other
3L	19251095	3L_19251095_SNP [dm3] 3L_19257995_SNP [dm6]	T	C	3.425e^-4	0.89	UTR_3_PRIME nes DOWNSTREAM rept
3L	19253082	3L_19253082_SNP [dm3] 3L_19259982_SNP [dm6]	A	C	3.425e^-4	0.89	UPSTREAM CR45210 INTRON nes	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	19254960	3L_19254960_SNP [dm3] 3L_19261860_SNP [dm6]	G	A	3.425e^-4	0.89	SYNONYMOUS_CODING Bet1 DOWNSTREAM CR45210 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19255197	3L_19255197_SNP [dm3] 3L_19262097_SNP [dm6]	T	C	3.425e^-4	0.89	SYNONYMOUS_CODING Bet1 DOWNSTREAM Max	TF binding site mE1_TFBS_HSA
3L	19256093	3L_19256093_SNP [dm3] 3L_19262993_SNP [dm6]	C	T	3.425e^-4	0.89	SYNONYMOUS_CODING Max UPSTREAM CG9666 & 1 other DOWNSTREAM Bet1	TF binding site mE1_TFBS_cad
3L	19257198	3L_19257198_DEL [dm3] 3L_19264098_DEL [dm6]	TAA	T	3.425e^-4	0.89	UTR_5_PRIME Max UPSTREAM CG9666 & 1 other INTRON CG9666 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	19257338	3L_19257338_SNP [dm3] 3L_19264238_SNP [dm6]	T	C	3.425e^-4	0.89	UPSTREAM CG9666 & 2 others INTRON CG9666 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	19258372	3L_19258372_SNP [dm3] 3L_19265272_SNP [dm6]	G	T	3.425e^-4	0.89	NON_SYNONYMOUS_CODING CG9666 UTR_3_PRIME CG42374 UPSTREAM CG45081	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19259042	3L_19259042_SNP [dm3] 3L_19265942_SNP [dm6]	A	G	3.425e^-4	0.89	UPSTREAM CG45081 DOWNSTREAM CG9629 INTRON CG9666 & 1 other
3L	19263493	3L_19263493_SNP [dm3] 3L_19270393_SNP [dm6]	G	A	3.425e^-4	0.89	NON_SYNONYMOUS_CODING CG14088 INTRON CG14085	TF binding site mE1_TFBS_cad
3L	19264272	3L_19264272_SNP [dm3] 3L_19271172_SNP [dm6]	T	C	3.425e^-4	0.89	UPSTREAM CG14088 INTRON CG14085	TF binding site BDTNP1_TFBS_twi
3L	19264421	3L_19264421_SNP [dm3] 3L_19271321_SNP [dm6]	G	C	3.425e^-4	0.89	UPSTREAM CG14088 INTRON CG14085	TF binding site BDTNP1_TFBS_twi
3L	19265377	3L_19265377_SNP [dm3] 3L_19272277_SNP [dm6]	C	A	3.425e^-4	0.89	SYNONYMOUS_CODING CG14085	TF binding site BDTNP1_TFBS_twi
3L	19265410	3L_19265410_SNP [dm3] 3L_19272310_SNP [dm6]	G	A	3.425e^-4	0.89	SYNONYMOUS_CODING CG14085	TF binding site BDTNP1_TFBS_twi
3L	19265411	3L_19265411_SNP [dm3] 3L_19272311_SNP [dm6]	C	G	3.425e^-4	0.89	NON_SYNONYMOUS_CODING CG14085	TF binding site BDTNP1_TFBS_twi
3L	19266392	3L_19266392_SNP [dm3] 3L_19273292_SNP [dm6]	T	C	3.425e^-4	0.89	SYNONYMOUS_CODING CG14085	TF binding site mE1_TFBS_cad
3L	19267199	3L_19267199_SNP [dm3] 3L_19274099_SNP [dm6]	A	G	3.425e^-4	0.89	UTR_3_PRIME CG14085	TF binding site mE1_TFBS_cad
3L	19267477	3L_19267477_DEL [dm3] 3L_19274377_DEL [dm6]	TTTC	A	3.425e^-4	0.89	DOWNSTREAM CG14085 INTERGENIC	TF binding site mE1_TFBS_cad
3L	19268169	3L_19268169_SNP [dm3] 3L_19275069_SNP [dm6]	A	C	3.425e^-4	0.89	UPSTREAM CG14086 DOWNSTREAM CG14085 INTERGENIC
3L	19268170	3L_19268170_SNP [dm3] 3L_19275070_SNP [dm6]	G	A	3.425e^-4	0.89	UPSTREAM CG14086 DOWNSTREAM CG14085 INTERGENIC
3L	19270635	3L_19270635_SNP [dm3] 3L_19277535_SNP [dm6]	A	C	3.425e^-4	0.89	INTRON CG14086
3L	19272347	3L_19272347_SNP [dm3] 3L_19279247_SNP [dm6]	A	T	3.425e^-4	0.89	DOWNSTREAM CG14089 INTRON CG14086
3L	19273128	3L_19273128_SNP [dm3] 3L_19280028_SNP [dm6]	C	T	3.425e^-4	0.89	DOWNSTREAM CG14089 & 1 other INTERGENIC
3L	19273171	3L_19273171_SNP [dm3] 3L_19280071_SNP [dm6]	G	C	3.425e^-4	0.89	DOWNSTREAM CG14089 & 1 other INTERGENIC
3L	19273852	3L_19273852_SNP [dm3] 3L_19280752_SNP [dm6]	C	G	3.425e^-4	0.89	NON_SYNONYMOUS_CODING CG14089 DOWNSTREAM CG14086 & 1 other
3L	19274139	3L_19274139_SNP [dm3] 3L_19281039_SNP [dm6]	T	C	3.425e^-4	0.89	UPSTREAM CG14089 DOWNSTREAM Gbs-76A INTERGENIC
3L	19277061	3L_19277061_SNP [dm3] 3L_19283961_SNP [dm6]	G	A	3.425e^-4	0.89	SYNONYMOUS_CODING Gbs-76A	TF binding site mE1_TFBS_cad
3L	3921108	3L_3921108_SNP [dm3] 3L_3921108_SNP [dm6]	A	G	3.425e^-4	0.89	INTRON Eip63F-1
3L	3921114	3L_3921114_MNP [dm3] 3L_3921114_MNP [dm6]	GTC	CAT	3.425e^-4	0.89	INTRON Eip63F-1
3L	3921198	3L_3921198_SNP [dm3] 3L_3921198_SNP [dm6]	G	A	3.425e^-4	0.89	INTRON Eip63F-1
3L	3921208	3L_3921208_SNP [dm3] 3L_3921208_SNP [dm6]	C	A	3.425e^-4	0.89	INTRON Eip63F-1
3L	3921900	3L_3921900_SNP [dm3] 3L_3921900_SNP [dm6]	G	T	3.425e^-4	0.89	INTRON Eip63F-1
3L	4705287	3L_4705287_SNP [dm3] 3L_4705287_SNP [dm6]	C	A	3.425e^-4	0.89	INTRON RhoGEF64C
3L	6671621	3L_6671621_SNP [dm3] 3L_6678521_SNP [dm6]	T	A	3.425e^-4	0.89	INTERGENIC
3L	7784871	3L_7784871_SNP [dm3] 3L_7791771_SNP [dm6]	T	C	3.425e^-4	0.89	INTRON CG32369
3L	9483187	3L_9483187_SNP [dm3] 3L_9490087_SNP [dm6]	T	C	3.425e^-4	0.89	UTR_3_PRIME CG32037 UPSTREAM CG32036	TF binding site mE1_TFBS_cad
3L	9486877	3L_9486877_DEL [dm3] 3L_9493777_DEL [dm6]	AGAT	C	3.425e^-4	0.89	DOWNSTREAM path INTERGENIC
3L	9486892	3L_9486892_DEL [dm3] 3L_9493792_DEL [dm6]	GTAGACCCTAGCAG...	G	3.425e^-4	0.89	DOWNSTREAM path INTERGENIC
3R	13343270	3R_13343270_SNP [dm3] 3R_17517548_SNP [dm6]	G	C	3.425e^-4	0.89	DOWNSTREAM CR44349 INTERGENIC
3R	13363058	3R_13363058_SNP [dm3] 3R_17537336_SNP [dm6]	A	C	3.425e^-4	0.89	DOWNSTREAM P5cr-2 INTRON l_3_07882
3R	14194763	3R_14194763_SNP [dm3] 3R_18369041_SNP [dm6]	T	A	3.425e^-4	0.89	UTR_3_PRIME gl INTRON gl
3R	14301985	3R_14301985_SNP [dm3] 3R_18476263_SNP [dm6]	A	G	3.425e^-4	0.89	INTRON fru
3R	15508760	3R_15508760_INS [dm3] 3R_19683038_INS [dm6]	T	TT	3.425e^-4	0.89	INTRON Naam
3R	18302911	3R_18302911_SNP [dm3] 3R_22477189_SNP [dm6]	G	T	3.425e^-4	0.89	INTRON Nrx-1
3R	18767163	3R_18767163_SNP [dm3] 3R_22941441_SNP [dm6]	C	G	3.425e^-4	0.89	INTRON klg
3R	20328654	3R_20328654_SNP [dm3] 3R_24502932_SNP [dm6]	T	A	3.425e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_inv
3R	24604786	3R_24604786_SNP [dm3] 3R_28779064_SNP [dm6]	G	A	3.425e^-4	0.89	INTERGENIC
3R	25061748	3R_25061748_SNP [dm3] 3R_29236026_SNP [dm6]	C	A	3.425e^-4	0.89	NON_SYNONYMOUS_CODING CG11951 UTR_3_PRIME CG11951 DOWNSTREAM CG15817	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25064534	3R_25064534_DEL [dm3] 3R_29238812_DEL [dm6]	GATCAGAGAATATTCATTAT...	TTAATTTGCGGTTTAGTT...	3.425e^-4	0.89	UTR_3_PRIME CG31427 UPSTREAM CG11951 DOWNSTREAM CG31427 INTRAGENIC CG31427 INTERGENIC
3R	25314982	3R_25314982_SNP [dm3] 3R_29489260_SNP [dm6]	G	T	3.425e^-4	0.89	UTR_5_PRIME CG2321 UPSTREAM CG2006	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26532996	3R_26532996_SNP [dm3] 3R_30707274_SNP [dm6]	C	T	3.425e^-4	0.89	INTERGENIC
X	10111666	X_10111666_SNP [dm3] X_10217633_SNP [dm6]	A	C	3.425e^-4	0.89	UPSTREAM CG2962 & 1 other DOWNSTREAM CG15308 & 1 other EXON CR45629
X	11566602	X_11566602_SNP [dm3] X_11672569_SNP [dm6]	G	C	3.425e^-4	0.89	SYNONYMOUS_CODING Ptp10D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14373512	X_14373512_SNP [dm3] X_14479479_SNP [dm6]	C	G	3.425e^-4	0.89	INTRON CG9411
X	15455306	X_15455306_SNP [dm3] X_15561273_SNP [dm6]	T	G	3.425e^-4	0.89	INTERGENIC
X	2215079	X_2215079_SNP [dm3] X_2321046_SNP [dm6]	T	A	3.425e^-4	0.89	DOWNSTREAM CR34052 INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8025542	X_8025542_SNP [dm3] X_8131509_SNP [dm6]	T	A	3.425e^-4	0.89	NON_SYNONYMOUS_CODING CG2116 UPSTREAM CG10958 INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_sens
X	8025601	X_8025601_SNP [dm3] X_8131568_SNP [dm6]	T	C	3.425e^-4	0.89	SYNONYMOUS_CODING CG2116 UPSTREAM CG10958 INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	9833771	X_9833771_SNP [dm3] X_9939738_SNP [dm6]	C	G	3.425e^-4	0.89	INTERGENIC
2L	5938728	2L_5938728_SNP [dm3] 2L_5938728_SNP [dm6]	G	A	3.511e^-4	0.89	UTR_3_PRIME dsf
2L	5938731	2L_5938731_SNP [dm3] 2L_5938731_SNP [dm6]	A	C	3.511e^-4	0.89	UTR_3_PRIME dsf
3R	9812488	3R_9812488_DEL [dm3] 3R_13986766_DEL [dm6]	TT	T	3.582e^-4	0.89	INTRON rdx	TF binding site BDTNP1_TFBS_da mE1_TFBS_Trl
2L	20876215	2L_20876215_SNP [dm3] 2L_20876215_SNP [dm6]	G	A	3.643e^-4	0.89	DOWNSTREAM CR44981 INTRON sky & 1 other	TF binding site mE1_TFBS_inv
2L	14401721	2L_14401721_SNP [dm3] 2L_14401721_SNP [dm6]	A	T	3.690e^-4	0.89	INTRON elB
3L	1031894	3L_1031894_SNP [dm3] 3L_1031894_SNP [dm6]	C	T	3.707e^-4	0.89	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	1031895	3L_1031895_SNP [dm3] 3L_1031895_SNP [dm6]	T	C	3.707e^-4	0.89	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	1031919	3L_1031919_SNP [dm3] 3L_1031919_SNP [dm6]	G	A	3.707e^-4	0.89	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	11223599	3L_11223599_SNP [dm3] 3L_11230499_SNP [dm6]	G	C	3.707e^-4	0.89	UTR_3_PRIME CG42671 DOWNSTREAM CG42671 & 1 other
3L	11415006	3L_11415006_SNP [dm3] 3L_11421906_SNP [dm6]	G	A	3.707e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11415312	3L_11415312_DEL [dm3] 3L_11422212_DEL [dm6]	AA	A	3.707e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12418678	3L_12418678_SNP [dm3] 3L_12425578_SNP [dm6]	A	C	3.707e^-4	0.89	INTRON toe	TF binding site mE1_TFBS_cad
3L	14058494	3L_14058494_SNP [dm3] 3L_14065394_SNP [dm6]	T	G	3.707e^-4	0.89	INTRON CG32138	TF binding site mE1_TFBS_cad
3L	1752630	3L_1752630_SNP [dm3] 3L_1752630_SNP [dm6]	T	C	3.707e^-4	0.89	UTR_3_PRIME Cht2 DOWNSTREAM CG13921	TF binding site mE1_TFBS_cad
3L	19211514	3L_19211514_SNP [dm3] 3L_19218414_SNP [dm6]	C	T	3.707e^-4	0.89	INTRON fz2
3L	19235876	3L_19235876_SNP [dm3] 3L_19242776_SNP [dm6]	C	A	3.707e^-4	0.89	INTERGENIC
3L	19235933	3L_19235933_DEL [dm3] 3L_19242833_DEL [dm6]	GG	G	3.707e^-4	0.89	INTERGENIC
3L	8216663	3L_8216663_SNP [dm3] 3L_8223563_SNP [dm6]	G	C	3.707e^-4	0.89	DOWNSTREAM CG13678 INTERGENIC	TF binding site mE1_TFBS_cad
3L	9936364	3L_9936364_SNP [dm3] 3L_9943264_SNP [dm6]	C	G	3.707e^-4	0.89	INTRON CG34356
3L	9936468	3L_9936468_SNP [dm3] 3L_9943368_SNP [dm6]	C	T	3.707e^-4	0.89	INTRON CG34356
3R	13568723	3R_13568723_SNP [dm3] 3R_17743001_SNP [dm6]	T	C	3.707e^-4	0.89	INTRON TyrRII
3R	13568780	3R_13568780_SNP [dm3] 3R_17743058_SNP [dm6]	C	T	3.707e^-4	0.89	INTRON TyrRII
3R	23997480	3R_23997480_SNP [dm3] 3R_28171758_SNP [dm6]	C	G	3.707e^-4	0.89	INTRON CG34354
3R	25063404	3R_25063404_SNP [dm3] 3R_29237682_SNP [dm6]	T	C	3.707e^-4	0.89	SYNONYMOUS_CODING CG11951	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5363325	3L_5363325_SNP [dm3] 3L_5370225_SNP [dm6]	A	G	3.810e^-4	0.89	DOWNSTREAM CR44515 EXON CR44515
X	17683647	X_17683647_SNP [dm3] X_17789614_SNP [dm6]	G	T	3.852e^-4	0.89	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19464133	2R_19464133_SNP [dm3] 2R_23576610_SNP [dm6]	C	T	3.913e^-4	0.89	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	6110721	X_6110721_SNP [dm3] X_6216688_SNP [dm6]	T	G	3.953e^-4	0.89	DOWNSTREAM Btd INTERGENIC
3R	11201213	3R_11201213_SNP [dm3] 3R_15375491_SNP [dm6]	C	G	3.960e^-4	0.89	UPSTREAM Rbp INTRON Rbp
2L	14505162	2L_14505162_INS [dm3] 2L_14505162_INS [dm6]	A	AA	3.977e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	2049365	2L_2049365_SNP [dm3] 2L_2049365_SNP [dm6]	A	T	3.977e^-4	0.89	INTERGENIC
3L	12053341	3L_12053341_SNP [dm3] 3L_12060241_SNP [dm6]	A	T	4.107e^-4	0.89	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	15331185	2L_15331185_DEL [dm3] 2L_15331185_DEL [dm6]	ATTAATATGT	GCCTCGG	4.117e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18867167	2L_18867167_SNP [dm3] 2L_18867167_SNP [dm6]	T	G	4.203e^-4	0.89	UPSTREAM mir-4946 INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20439236	2L_20439236_DEL [dm3] 2L_20439236_DEL [dm6]	TT	T	4.214e^-4	0.89	UPSTREAM CR43607 INTRON CG31688	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16634050	2L_16634050_SNP [dm3] 2L_16634050_SNP [dm6]	A	C	4.223e^-4	0.89	INTRON CG42389
2L	4106336	2L_4106336_SNP [dm3] 2L_4106336_SNP [dm6]	T	G	4.234e^-4	0.89	INTRON ed
2L	10077836	2L_10077836_SNP [dm3] 2L_10077836_SNP [dm6]	G	C	4.240e^-4	0.89	INTRON CG44153
2L	9150070	2L_9150070_SNP [dm3] 2L_9150070_SNP [dm6]	T	G	4.240e^-4	0.89	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	9669394	2L_9669394_SNP [dm3] 2L_9669394_SNP [dm6]	C	T	4.240e^-4	0.89	DOWNSTREAM CR44150 INTERGENIC
3L	14924531	3L_14924531_SNP [dm3] 3L_14931431_SNP [dm6]	G	A	4.246e^-4	0.89	INTRON DCX-EMAP
3R	14284708	3R_14284708_SNP [dm3] 3R_18458986_SNP [dm6]	C	T	4.246e^-4	0.89	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11941873	2L_11941873_SNP [dm3] 2L_11941873_SNP [dm6]	C	T	4.391e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs
2L	12097081	2L_12097081_SNP [dm3] 2L_12097081_SNP [dm6]	A	G	4.391e^-4	0.89	SYNONYMOUS_CODING Mt2 UPSTREAM CG6712 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	12841336	2L_12841336_SNP [dm3] 2L_12841336_SNP [dm6]	G	A	4.391e^-4	0.89	UPSTREAM CR44971 DOWNSTREAM CR44970 INTERGENIC
2L	13832316	2L_13832316_SNP [dm3] 2L_13832316_SNP [dm6]	G	A	4.391e^-4	0.89	NON_SYNONYMOUS_CODING DNApol-gamma35 UTR_3_PRIME CG33649 DOWNSTREAM Orc5	TF binding site mE1_TFBS_sens
2L	13871037	2L_13871037_SNP [dm3] 2L_13871037_SNP [dm6]	C	T	4.391e^-4	0.89	INTRON CenG1A	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	13871055	2L_13871055_SNP [dm3] 2L_13871055_SNP [dm6]	G	C	4.391e^-4	0.89	INTRON CenG1A	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	18075070	2L_18075070_SNP [dm3] 2L_18075070_SNP [dm6]	A	C	4.391e^-4	0.89	INTERGENIC
2L	18075072	2L_18075072_SNP [dm3] 2L_18075072_SNP [dm6]	A	G	4.391e^-4	0.89	INTERGENIC
2L	18075076	2L_18075076_SNP [dm3] 2L_18075076_SNP [dm6]	C	T	4.391e^-4	0.89	INTERGENIC
2L	18075077	2L_18075077_SNP [dm3] 2L_18075077_SNP [dm6]	C	A	4.391e^-4	0.89	INTERGENIC
2L	18075109	2L_18075109_DEL [dm3] 2L_18075109_DEL [dm6]	AGGC	A	4.391e^-4	0.89	INTERGENIC
2L	18075118	2L_18075118_SNP [dm3] 2L_18075118_SNP [dm6]	C	T	4.391e^-4	0.89	INTERGENIC
2L	18075119	2L_18075119_DEL [dm3] 2L_18075119_DEL [dm6]	TTAA	T	4.391e^-4	0.89	INTERGENIC
2L	18075124	2L_18075124_SNP [dm3] 2L_18075124_SNP [dm6]	A	T	4.391e^-4	0.89	INTERGENIC
2L	18075130	2L_18075130_DEL [dm3] 2L_18075130_DEL [dm6]	TGTCCATCGAATATCC...	A	4.391e^-4	0.89	INTERGENIC
2L	1517476	2L_1517476_SNP [dm3] 2L_1517476_SNP [dm6]	C	G	4.409e^-4	0.89	UTR_5_PRIME CG18132 DOWNSTREAM halo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15756376	2L_15756376_SNP [dm3] 2L_15756376_SNP [dm6]	C	G	4.409e^-4	0.89	UTR_3_PRIME Gli DOWNSTREAM l_2_35Df
2L	8343125	2L_8343125_SNP [dm3] 2L_8343125_SNP [dm6]	G	T	4.409e^-4	0.89	DOWNSTREAM CR45371 INTRON CG14273
3L	19221792	3L_19221792_SNP [dm3] 3L_19228692_SNP [dm6]	G	A	4.409e^-4	0.89	UPSTREAM CR43893 INTRON fz2
2L	19417584	2L_19417584_SNP [dm3] 2L_19417584_SNP [dm6]	G	A	4.477e^-4	0.89	UPSTREAM lectin-37Da INTRON Pax & 1 other	TF binding site mE1_TFBS_HSA
2L	1141281	2L_1141281_DEL [dm3] 2L_1141281_DEL [dm6]	AA	A	4.546e^-4	0.89	DOWNSTREAM CG4577 INTERGENIC
3L	8296823	3L_8296823_SNP [dm3] 3L_8303723_SNP [dm6]	G	T	4.550e^-4	0.89	UPSTREAM Sbp2 INTRON CG7194	TF binding site BDTNP1_TFBS_dl
2R	11673381	2R_11673381_SNP [dm3] 2R_15785876_SNP [dm6]	G	C	4.594e^-4	0.89	INTRON Zasp52	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	13906575	2R_13906575_SNP [dm3] 2R_18019070_SNP [dm6]	G	C	4.594e^-4	0.89	NON_SYNONYMOUS_CODING CG5084	TF binding site mE1_TFBS_cad
2R	6336647	2R_6336647_SNP [dm3] 2R_10449142_SNP [dm6]	G	C	4.594e^-4	0.89	DOWNSTREAM Cyp49a1 INTRON Galphao
2R	6336652	2R_6336652_SNP [dm3] 2R_10449147_SNP [dm6]	A	T	4.594e^-4	0.89	DOWNSTREAM Cyp49a1 INTRON Galphao
2R	6336653	2R_6336653_SNP [dm3] 2R_10449148_SNP [dm6]	G	A	4.594e^-4	0.89	DOWNSTREAM Cyp49a1 INTRON Galphao
2R	6336662	2R_6336662_SNP [dm3] 2R_10449157_SNP [dm6]	T	G	4.594e^-4	0.89	DOWNSTREAM Cyp49a1 INTRON Galphao
3L	14557958	3L_14557958_SNP [dm3] 3L_14564858_SNP [dm6]	C	T	4.594e^-4	0.89	INTERGENIC
3L	16972469	3L_16972469_SNP [dm3] 3L_16979369_SNP [dm6]	G	A	4.594e^-4	0.89	INTRON Exn
3L	3890535	3L_3890535_SNP [dm3] 3L_3890535_SNP [dm6]	A	C	4.594e^-4	0.89	INTERGENIC
3L	19239644	3L_19239644_SNP [dm3] 3L_19246544_SNP [dm6]	T	C	4.698e^-4	0.89	INTERGENIC
3L	8281328	3L_8281328_SNP [dm3] 3L_8288228_SNP [dm6]	A	T	4.698e^-4	0.89	SPLICE_SITE_REGION cert INTRON cert
3L	8283971	3L_8283971_SNP [dm3] 3L_8290871_SNP [dm6]	C	T	4.698e^-4	0.89	INTRON CG7201	TF binding site mE1_TFBS_sens
3L	8284006	3L_8284006_SNP [dm3] 3L_8290906_SNP [dm6]	T	C	4.698e^-4	0.89	SPLICE_SITE_REGION CG7201 INTRON CG7201	TF binding site mE1_TFBS_sens
3L	8286197	3L_8286197_SNP [dm3] 3L_8293097_SNP [dm6]	A	T	4.698e^-4	0.89	INTRON CG7201
3L	8286256	3L_8286256_SNP [dm3] 3L_8293156_SNP [dm6]	C	T	4.698e^-4	0.89	INTRON CG7201
3L	8286314	3L_8286314_SNP [dm3] 3L_8293214_SNP [dm6]	G	T	4.698e^-4	0.89	INTRON CG7201
3L	8286315	3L_8286315_SNP [dm3] 3L_8293215_SNP [dm6]	C	G	4.698e^-4	0.89	INTRON CG7201
3L	8286344	3L_8286344_SNP [dm3] 3L_8293244_SNP [dm6]	T	G	4.698e^-4	0.89	INTRON CG7201
3L	8286438	3L_8286438_SNP [dm3] 3L_8293338_SNP [dm6]	C	T	4.698e^-4	0.89	INTRON CG7201
2L	13810140	2L_13810140_SNP [dm3] 2L_13810140_SNP [dm6]	T	C	4.773e^-4	0.89	UTR_3_PRIME adat DOWNSTREAM CAH1
3L	18657499	3L_18657499_SNP [dm3] 3L_18664399_SNP [dm6]	G	A	4.781e^-4	0.89	SYNONYMOUS_CODING MYPT-75D
2L	20852790	2L_20852790_SNP [dm3] 2L_20852790_SNP [dm6]	C	T	4.826e^-4	0.89	SYNONYMOUS_CODING twit	TF binding site mE1_TFBS_cad
2R	12373408	2R_12373408_SNP [dm3] 2R_16485903_SNP [dm6]	C	T	4.829e^-4	0.89	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	19255164	3L_19255164_SNP [dm3] 3L_19262064_SNP [dm6]	C	T	4.862e^-4	0.89	SYNONYMOUS_CODING Bet1 DOWNSTREAM Max	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6058570	2R_6058570_SNP [dm3] 2R_10171065_SNP [dm6]	T	A	4.867e^-4	0.89	INTRON KCNQ
2R	12373315	2R_12373315_SNP [dm3] 2R_16485810_SNP [dm6]	A	G	4.931e^-4	0.89	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1120508	3L_1120508_SNP [dm3] 3L_1120508_SNP [dm6]	T	A	4.931e^-4	0.89	INTERGENIC
3L	13087533	3L_13087533_SNP [dm3] 3L_13094433_SNP [dm6]	C	T	4.931e^-4	0.89	INTERGENIC
3L	14663700	3L_14663700_SNP [dm3] 3L_14670600_SNP [dm6]	C	A	4.931e^-4	0.89	SYNONYMOUS_CODING dlp
3L	14924550	3L_14924550_INS [dm3] 3L_14931450_INS [dm6]	A	AT	4.931e^-4	0.89	INTRON DCX-EMAP
3L	17619115	3L_17619115_SNP [dm3] 3L_17626015_SNP [dm6]	T	A	4.931e^-4	0.89	INTRON CG7510	TF binding site mE1_TFBS_inv
3L	18039193	3L_18039193_SNP [dm3] 3L_18046093_SNP [dm6]	C	T	4.931e^-4	0.89	INTRON Eip75B
3L	3537153	3L_3537153_SNP [dm3] 3L_3537153_SNP [dm6]	A	G	4.931e^-4	0.89	INTRON Eip63E
3R	14284634	3R_14284634_SNP [dm3] 3R_18458912_SNP [dm6]	A	G	4.931e^-4	0.89	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14284643	3R_14284643_INS [dm3] 3R_18458921_INS [dm6]	T	TACT	4.931e^-4	0.89	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14284678	3R_14284678_SNP [dm3] 3R_18458956_SNP [dm6]	C	T	4.931e^-4	0.89	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17180541	3R_17180541_DEL [dm3] 3R_21354819_DEL [dm6]	TAAACGTATACATATATT...	T	4.931e^-4	0.89	DOWNSTREAM mod_mdg4_ & 6 others INTRON mod_mdg4_
3R	20329642	3R_20329642_SNP [dm3] 3R_24503920_SNP [dm6]	G	A	4.931e^-4	0.89	INTERGENIC
3R	25186281	3R_25186281_SNP [dm3] 3R_29360559_SNP [dm6]	A	G	4.931e^-4	0.89	INTERGENIC
3R	25824060	3R_25824060_SNP [dm3] 3R_29998338_SNP [dm6]	G	A	4.931e^-4	0.89	UTR_5_PRIME CG11504 UPSTREAM CG15525	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	27508080	3R_27508080_SNP [dm3] 3R_31682358_SNP [dm6]	G	T	4.931e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9666818	3R_9666818_SNP [dm3] 3R_13841096_SNP [dm6]	T	G	4.931e^-4	0.89	INTERGENIC
3R	9666925	3R_9666925_SNP [dm3] 3R_13841203_SNP [dm6]	A	T	4.931e^-4	0.89	INTERGENIC
3R	9666962	3R_9666962_SNP [dm3] 3R_13841240_SNP [dm6]	T	C	4.931e^-4	0.89	INTERGENIC
2L	10665304	2L_10665304_SNP [dm3] 2L_10665304_SNP [dm6]	G	A	4.937e^-4	0.89	INTRON CG31871
3R	17181379	3R_17181379_SNP [dm3] 3R_21355657_SNP [dm6]	A	G	4.973e^-4	0.89	DOWNSTREAM pre-mod_mdg4_-K & 6 others INTRON mod_mdg4_
3L	12883121	3L_12883121_SNP [dm3] 3L_12890021_SNP [dm6]	C	T	5.068e^-4	0.89	UTR_5_PRIME CG43894 UPSTREAM CG43894 & 1 other DOWNSTREAM CG14120
2L	15408334	2L_15408334_SNP [dm3] 2L_15408334_SNP [dm6]	T	G	5.154e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	532283	2L_532283_SNP [dm3] 2L_532283_SNP [dm6]	A	G	5.154e^-4	0.89	INTRON ush
2L	5606502	2L_5606502_SNP [dm3] 2L_5606502_SNP [dm6]	T	C	5.154e^-4	0.89	INTRON CG14010
2R	4531617	2R_4531617_SNP [dm3] 2R_8644112_SNP [dm6]	T	C	5.154e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14047240	3L_14047240_SNP [dm3] 3L_14054140_SNP [dm6]	T	C	5.154e^-4	0.89	NON_SYNONYMOUS_CODING CG32138 DOWNSTREAM CG43986	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	13834449	2R_13834449_SNP [dm3] 2R_17946944_SNP [dm6]	A	G	5.199e^-4	0.89	INTERGENIC
2R	14428477	2R_14428477_SNP [dm3] 2R_18540972_SNP [dm6]	A	C	5.199e^-4	0.89	INTRON Rgk2	TF binding site mE1_TFBS_chinmo
2R	15249024	2R_15249024_SNP [dm3] 2R_19361519_SNP [dm6]	A	T	5.199e^-4	0.89	INTRON CG11961
2R	17190424	2R_17190424_SNP [dm3] 2R_21302919_SNP [dm6]	G	A	5.199e^-4	0.89	INTRON CG42672
2R	9522005	2R_9522005_SNP [dm3] 2R_13634500_SNP [dm6]	A	G	5.199e^-4	0.89	INTRON fas	TF binding site BDTNP1_TFBS_dl
2R	9522009	2R_9522009_SNP [dm3] 2R_13634504_SNP [dm6]	A	T	5.199e^-4	0.89	INTRON fas	TF binding site BDTNP1_TFBS_dl
2R	9522011	2R_9522011_SNP [dm3] 2R_13634506_SNP [dm6]	G	C	5.199e^-4	0.89	INTRON fas	TF binding site BDTNP1_TFBS_dl
2R	9522015	2R_9522015_SNP [dm3] 2R_13634510_SNP [dm6]	C	T	5.199e^-4	0.89	INTRON fas	TF binding site BDTNP1_TFBS_dl
2R	9522022	2R_9522022_SNP [dm3] 2R_13634517_SNP [dm6]	T	C	5.199e^-4	0.89	INTRON fas	TF binding site BDTNP1_TFBS_dl
2R	9522028	2R_9522028_SNP [dm3] 2R_13634523_SNP [dm6]	G	T	5.199e^-4	0.89	INTRON fas	TF binding site BDTNP1_TFBS_dl
2R	9522043	2R_9522043_SNP [dm3] 2R_13634538_SNP [dm6]	G	C	5.199e^-4	0.89	INTRON fas	TF binding site BDTNP1_TFBS_dl
2R	9552825	2R_9552825_SNP [dm3] 2R_13665320_SNP [dm6]	C	T	5.199e^-4	0.89	SYNONYMOUS_CODING CG13337 INTRON fas
2R	9937853	2R_9937853_SNP [dm3] 2R_14050348_SNP [dm6]	C	T	5.199e^-4	0.89	INTRON mam
3L	11223590	3L_11223590_DEL [dm3] 3L_11230490_DEL [dm6]	TT	T	5.199e^-4	0.89	UTR_3_PRIME CG42671 DOWNSTREAM CG42671 & 1 other
3L	11223613	3L_11223613_SNP [dm3] 3L_11230513_SNP [dm6]	A	C	5.199e^-4	0.89	UTR_3_PRIME CG42671 DOWNSTREAM CG42671 & 1 other
3L	1752617	3L_1752617_SNP [dm3] 3L_1752617_SNP [dm6]	G	A	5.199e^-4	0.89	UTR_3_PRIME Cht2 DOWNSTREAM CG13921	TF binding site mE1_TFBS_cad
3L	1752624	3L_1752624_SNP [dm3] 3L_1752624_SNP [dm6]	C	A	5.199e^-4	0.89	UTR_3_PRIME Cht2 DOWNSTREAM CG13921	TF binding site mE1_TFBS_cad
3L	1752631	3L_1752631_SNP [dm3] 3L_1752631_SNP [dm6]	T	C	5.199e^-4	0.89	UTR_3_PRIME Cht2 DOWNSTREAM CG13921	TF binding site mE1_TFBS_cad
3L	19208477	3L_19208477_SNP [dm3] 3L_19215377_SNP [dm6]	A	G	5.199e^-4	0.89	INTRON fz2
3L	19219688	3L_19219688_SNP [dm3] 3L_19226588_SNP [dm6]	C	T	5.199e^-4	0.89	INTRON fz2
3L	19221454	3L_19221454_SNP [dm3] 3L_19228354_SNP [dm6]	C	T	5.199e^-4	0.89	UPSTREAM CR43893 INTRON fz2
3L	19222197	3L_19222197_SNP [dm3] 3L_19229097_SNP [dm6]	T	G	5.199e^-4	0.89	INTRON fz2 EXON CR43893
3L	19223903	3L_19223903_SNP [dm3] 3L_19230803_SNP [dm6]	A	G	5.199e^-4	0.89	DOWNSTREAM CR43893 INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	19235525	3L_19235525_SNP [dm3] 3L_19242425_SNP [dm6]	G	A	5.199e^-4	0.89	INTERGENIC
3L	19238956	3L_19238956_INS [dm3] 3L_19245856_INS [dm6]	T	TCATTT	5.199e^-4	0.89	INTERGENIC
3L	19238959	3L_19238959_INS [dm3] 3L_19245859_INS [dm6]	C	CATTTTCAT	5.199e^-4	0.89	INTERGENIC
3L	19238962	3L_19238962_SNP [dm3] 3L_19245862_SNP [dm6]	C	T	5.199e^-4	0.89	INTERGENIC
3L	19238964	3L_19238964_INS [dm3] 3L_19245864_INS [dm6]	A	ATCATTATC	5.199e^-4	0.89	INTERGENIC
3L	8271414	3L_8271414_SNP [dm3] 3L_8278314_SNP [dm6]	C	T	5.199e^-4	0.89	SYNONYMOUS_CODING Dscam4	TF binding site mE1_TFBS_cad
3L	8271528	3L_8271528_SNP [dm3] 3L_8278428_SNP [dm6]	A	G	5.199e^-4	0.89	SYNONYMOUS_CODING Dscam4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8271573	3L_8271573_SNP [dm3] 3L_8278473_SNP [dm6]	G	A	5.199e^-4	0.89	SYNONYMOUS_CODING Dscam4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14061349	3R_14061349_SNP [dm3] 3R_18235627_SNP [dm6]	T	C	5.199e^-4	0.89	UPSTREAM repo INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15464225	3R_15464225_SNP [dm3] 3R_19638503_SNP [dm6]	G	T	5.199e^-4	0.89	INTRON subdued
3R	25725426	3R_25725426_SNP [dm3] 3R_29899704_SNP [dm6]	C	T	5.199e^-4	0.89	DOWNSTREAM CG31038 INTRON CG31038
X	12378826	X_12378826_SNP [dm3] X_12484793_SNP [dm6]	G	C	5.199e^-4	0.89	INTERGENIC
X	18885936	X_18885936_SNP [dm3] X_18991903_SNP [dm6]	A	G	5.199e^-4	0.89	INTRON CG43759
3L	11852662	3L_11852662_DEL [dm3] 3L_11859562_DEL [dm6]	TATC	T	5.301e^-4	0.89	INTRON CG44837
3L	11852674	3L_11852674_SNP [dm3] 3L_11859574_SNP [dm6]	T	A	5.301e^-4	0.89	INTRON CG44837
3L	11852677	3L_11852677_DEL [dm3] 3L_11859577_DEL [dm6]	TG	A	5.301e^-4	0.89	INTRON CG44837
3R	20383666	3R_20383666_SNP [dm3] 3R_24557944_SNP [dm6]	T	C	5.301e^-4	0.89	UTR_3_PRIME CG13624 DOWNSTREAM snRNA:U6:96Ac
3R	26422987	3R_26422987_SNP [dm3] 3R_30597265_SNP [dm6]	T	C	5.301e^-4	0.89	SPLICE_SITE_REGION CG31019 SYNONYMOUS_CODING CG31019 INTRON CG2246
3R	26553141	3R_26553141_SNP [dm3] 3R_30727419_SNP [dm6]	T	C	5.301e^-4	0.89	SYNONYMOUS_CODING CG1340	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8691860	3R_8691860_SNP [dm3] 3R_12866138_SNP [dm6]	G	A	5.301e^-4	0.89	INTERGENIC
2R	14620466	2R_14620466_SNP [dm3] 2R_18732961_SNP [dm6]	C	T	5.318e^-4	0.89	INTRON Hs3st-A
3L	1066588	3L_1066588_SNP [dm3] 3L_1066588_SNP [dm6]	T	A	5.318e^-4	0.89	INTRON bab1
3L	14582323	3L_14582323_INS [dm3] 3L_14589223_INS [dm6]	T	TCTATT	5.318e^-4	0.89	INTRON HGTX
3L	14582327	3L_14582327_SNP [dm3] 3L_14589227_SNP [dm6]	A	T	5.318e^-4	0.89	INTRON HGTX
3L	14582334	3L_14582334_INS [dm3] 3L_14589234_INS [dm6]	A	AAAAATATAAT...	5.318e^-4	0.89	INTRON HGTX
3L	14582339	3L_14582339_SNP [dm3] 3L_14589239_SNP [dm6]	T	C	5.318e^-4	0.89	INTRON HGTX
3L	14582376	3L_14582376_SNP [dm3] 3L_14589276_SNP [dm6]	T	C	5.318e^-4	0.89	INTRON HGTX
3L	14582392	3L_14582392_SNP [dm3] 3L_14589292_SNP [dm6]	G	C	5.318e^-4	0.89	INTRON HGTX
3L	14582437	3L_14582437_SNP [dm3] 3L_14589337_SNP [dm6]	C	T	5.318e^-4	0.89	INTRON HGTX
3L	14582441	3L_14582441_SNP [dm3] 3L_14589341_SNP [dm6]	A	G	5.318e^-4	0.89	INTRON HGTX
3L	14582445	3L_14582445_INS [dm3] 3L_14589345_INS [dm6]	T	TT	5.318e^-4	0.89	INTRON HGTX
3L	14582451	3L_14582451_DEL [dm3] 3L_14589351_DEL [dm6]	CA	C	5.318e^-4	0.89	INTRON HGTX
3L	14582458	3L_14582458_SNP [dm3] 3L_14589358_SNP [dm6]	T	C	5.318e^-4	0.89	INTRON HGTX
3L	14582475	3L_14582475_SNP [dm3] 3L_14589375_SNP [dm6]	T	G	5.318e^-4	0.89	INTRON HGTX
3L	14582476	3L_14582476_SNP [dm3] 3L_14589376_SNP [dm6]	G	T	5.318e^-4	0.89	INTRON HGTX
3L	16545941	3L_16545941_SNP [dm3] 3L_16552841_SNP [dm6]	T	G	5.318e^-4	0.89	INTERGENIC
3L	5898691	3L_5898691_SNP [dm3] 3L_5905591_SNP [dm6]	A	G	5.318e^-4	0.89	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486
3L	5902536	3L_5902536_SNP [dm3] 3L_5909436_SNP [dm6]	G	A	5.318e^-4	0.89	SYNONYMOUS_CODING CG13288
3L	8238170	3L_8238170_SNP [dm3] 3L_8245070_SNP [dm6]	A	G	5.318e^-4	0.89	INTRON Dscam4
3R	25032787	3R_25032787_SNP [dm3] 3R_29207065_SNP [dm6]	G	A	5.318e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	15327080	X_15327080_SNP [dm3] X_15433047_SNP [dm6]	G	A	5.318e^-4	0.89	INTRON Cngl
2L	9906831	2L_9906831_SNP [dm3] 2L_9906831_SNP [dm6]	C	T	5.393e^-4	0.89	INTRON CG13124	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20477878	3R_20477878_SNP [dm3] 3R_24652156_SNP [dm6]	T	C	5.393e^-4	0.89	SYNONYMOUS_CODING ash2 UTR_5_PRIME ash2	TF binding site mE1_TFBS_cad
3R	14793310	3R_14793310_INS [dm3] 3R_18967588_INS [dm6]	G	AGTTATAACCA...	5.444e^-4	0.89	INTRON CG42613 & 1 other
3R	14793392	3R_14793392_SNP [dm3] 3R_18967670_SNP [dm6]	A	C	5.444e^-4	0.89	INTRON CG42613 & 1 other
3R	14793447	3R_14793447_SNP [dm3] 3R_18967725_SNP [dm6]	A	T	5.444e^-4	0.89	INTRON CG42613 & 1 other
3R	21437717	3R_21437717_SNP [dm3] 3R_25611995_SNP [dm6]	A	T	5.444e^-4	0.89	INTRON Npl4
3R	27502601	3R_27502601_SNP [dm3] 3R_31676879_SNP [dm6]	C	A	5.444e^-4	0.89	SYNONYMOUS_CODING CG1815 UTR_3_PRIME CG1815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	6048154	2R_6048154_SNP [dm3] 2R_10160649_SNP [dm6]	T	G	5.494e^-4	0.89	INTRON KCNQ	TF binding site mE1_TFBS_HSA
X	12962652	X_12962652_SNP [dm3] X_13068619_SNP [dm6]	A	T	5.494e^-4	0.89	INTRON rad
2L	10662895	2L_10662895_SNP [dm3] 2L_10662895_SNP [dm6]	T	C	5.508e^-4	0.89	INTRON CG31871
2L	10665744	2L_10665744_SNP [dm3] 2L_10665744_SNP [dm6]	A	T	5.508e^-4	0.89	INTRON CG31871
2L	13961207	2L_13961207_SNP [dm3] 2L_13961207_SNP [dm6]	G	C	5.508e^-4	0.89	INTRON NimA	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5970351	2L_5970351_SNP [dm3] 2L_5970351_SNP [dm6]	A	G	5.508e^-4	0.89	SYNONYMOUS_CODING Ucp4B DOWNSTREAM Ucp4C EXON CR43465	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	5970354	2L_5970354_SNP [dm3] 2L_5970354_SNP [dm6]	C	T	5.508e^-4	0.89	SYNONYMOUS_CODING Ucp4B DOWNSTREAM Ucp4C EXON CR43465	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	4157569	2R_4157569_DEL [dm3] 2R_8270064_DEL [dm6]	AT	C	5.508e^-4	0.89	UPSTREAM CG30371 INTERGENIC
3L	1359067	3L_1359067_SNP [dm3] 3L_1359067_SNP [dm6]	T	C	5.508e^-4	0.89	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	13816314	2L_13816314_SNP [dm3] 2L_13816314_SNP [dm6]	T	C	5.562e^-4	0.89	SYNONYMOUS_CODING Sos	TF binding site mE1_TFBS_cad
2R	13906452	2R_13906452_SNP [dm3] 2R_18018947_SNP [dm6]	C	T	5.562e^-4	0.89	INTRON CG5084
2R	13906462	2R_13906462_SNP [dm3] 2R_18018957_SNP [dm6]	T	C	5.562e^-4	0.89	INTRON CG5084
2R	12373393	2R_12373393_SNP [dm3] 2R_16485888_SNP [dm6]	C	G	5.696e^-4	0.89	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13775949	2L_13775949_SNP [dm3] 2L_13775949_SNP [dm6]	A	C	5.757e^-4	0.89	SYNONYMOUS_CODING CG9008
3L	1120464	3L_1120464_SNP [dm3] 3L_1120464_SNP [dm6]	G	T	5.815e^-4	0.89	INTERGENIC
2R	6048085	2R_6048085_SNP [dm3] 2R_10160580_SNP [dm6]	A	T	5.819e^-4	0.89	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14944541	3L_14944541_SNP [dm3] 3L_14951441_SNP [dm6]	G	T	5.901e^-4	0.89	INTERGENIC
2R	17890853	2R_17890853_INS [dm3] 2R_22003348_INS [dm6]	C	CAGATC	5.937e^-4	0.89	INTRON CG34370	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6048062	2R_6048062_SNP [dm3] 2R_10160557_SNP [dm6]	A	T	5.937e^-4	0.89	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6045607	2R_6045607_SNP [dm3] 2R_10158102_SNP [dm6]	C	T	5.954e^-4	0.89	UTR_5_PRIME mlt INTRON KCNQ	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	6058420	2R_6058420_SNP [dm3] 2R_10170915_SNP [dm6]	G	A	5.954e^-4	0.89	INTRON KCNQ
2R	6894687	2R_6894687_SNP [dm3] 2R_11007182_SNP [dm6]	G	C	5.954e^-4	0.89	INTRON luna
2R	6894688	2R_6894688_SNP [dm3] 2R_11007183_SNP [dm6]	A	G	5.954e^-4	0.89	INTRON luna
2R	6894690	2R_6894690_SNP [dm3] 2R_11007185_SNP [dm6]	G	T	5.954e^-4	0.89	INTRON luna
2R	6894697	2R_6894697_SNP [dm3] 2R_11007192_SNP [dm6]	G	A	5.954e^-4	0.89	INTRON luna
3L	1120442	3L_1120442_SNP [dm3] 3L_1120442_SNP [dm6]	G	A	5.954e^-4	0.89	INTERGENIC
3L	14048782	3L_14048782_SNP [dm3] 3L_14055682_SNP [dm6]	G	A	5.954e^-4	0.89	INTRON CG32138	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	11202034	X_11202034_SNP [dm3] X_11308001_SNP [dm6]	C	A	5.954e^-4	0.89	DOWNSTREAM Ir10a INTERGENIC
X	20261398	X_20261398_SNP [dm3] X_20390371_SNP [dm6]	T	C	5.954e^-4	0.89	SYNONYMOUS_CODING jb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	20262355	X_20262355_SNP [dm3] X_20391328_SNP [dm6]	A	C	5.954e^-4	0.89	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20262443	X_20262443_SNP [dm3] X_20391416_SNP [dm6]	C	G	5.954e^-4	0.89	UPSTREAM l_1_G0004 & 1 other DOWNSTREAM Syx16 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20262458	X_20262458_SNP [dm3] X_20391431_SNP [dm6]	A	T	5.954e^-4	0.89	UPSTREAM l_1_G0004 & 1 other DOWNSTREAM Syx16 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20263024	X_20263024_SNP [dm3] X_20391997_SNP [dm6]	G	A	5.954e^-4	0.89	SYNONYMOUS_CODING l_1_G0004 DOWNSTREAM Syx16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	9999032	X_9999032_SNP [dm3] X_10104999_SNP [dm6]	G	A	5.954e^-4	0.89	INTRON RhoU	TF binding site BDTNP1_TFBS_dl
3R	851504	3R_851504_INS [dm3] 3R_5025782_INS [dm6]	G	GTTTTTCG	5.964e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Stat92E
X	19489007	X_19489007_SNP [dm3] X_19594974_SNP [dm6]	C	T	5.964e^-4	0.89	SYNONYMOUS_CODING CG14205
3L	14840126	3L_14840126_SNP [dm3] 3L_14847026_SNP [dm6]	G	A	6.099e^-4	0.89	INTRON CG17839
3L	14840128	3L_14840128_SNP [dm3] 3L_14847028_SNP [dm6]	G	A	6.099e^-4	0.89	INTRON CG17839
3L	19258418	3L_19258418_SNP [dm3] 3L_19265318_SNP [dm6]	T	C	6.099e^-4	0.89	SYNONYMOUS_CODING CG9666 UTR_3_PRIME CG42374 UPSTREAM CG45081	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	19258625	3L_19258625_SNP [dm3] 3L_19265525_SNP [dm6]	G	C	6.099e^-4	0.89	UPSTREAM CG45081 DOWNSTREAM CG9629 INTRON CG9666 & 1 other	TF binding site mE1_TFBS_cad
3L	19258689	3L_19258689_SNP [dm3] 3L_19265589_SNP [dm6]	T	C	6.099e^-4	0.89	UPSTREAM CG45081 DOWNSTREAM CG9629 INTRON CG9666 & 1 other	TF binding site mE1_TFBS_cad
3L	19258854	3L_19258854_SNP [dm3] 3L_19265754_SNP [dm6]	C	T	6.099e^-4	0.89	UPSTREAM CG45081 DOWNSTREAM CG9629 INTRON CG9666 & 1 other
3L	3692605	3L_3692605_SNP [dm3] 3L_3692605_SNP [dm6]	G	A	6.099e^-4	0.89	INTERGENIC
3L	3692654	3L_3692654_SNP [dm3] 3L_3692654_SNP [dm6]	G	A	6.099e^-4	0.89	INTERGENIC
3L	5877163	3L_5877163_SNP [dm3] 3L_5884063_SNP [dm6]	G	A	6.099e^-4	0.89	UTR_3_PRIME CG13287	TF binding site BDTNP1_TFBS_prd
3R	10225231	3R_10225231_SNP [dm3] 3R_14399509_SNP [dm6]	C	T	6.099e^-4	0.89	INTRON cv-c	TF binding site mE1_TFBS_Trl
3R	10225243	3R_10225243_INS [dm3] 3R_14399521_INS [dm6]	G	GGGAAAAC	6.099e^-4	0.89	INTRON cv-c	TF binding site mE1_TFBS_Trl
3R	25876516	3R_25876516_SNP [dm3] 3R_30050794_SNP [dm6]	C	T	6.099e^-4	0.89	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	25970191	3R_25970191_DEL [dm3] 3R_30144469_DEL [dm6]	ACA	A	6.099e^-4	0.89	INTRON AdoR
3R	3163405	3R_3163405_SNP [dm3] 3R_7337683_SNP [dm6]	A	G	6.099e^-4	0.89	INTERGENIC
3R	3343867	3R_3343867_SNP [dm3] 3R_7518145_SNP [dm6]	C	A	6.099e^-4	0.89	DOWNSTREAM Ubc84D INTERGENIC
3R	3344069	3R_3344069_SNP [dm3] 3R_7518347_SNP [dm6]	A	T	6.099e^-4	0.89	DOWNSTREAM Ubc84D INTERGENIC
3R	3346511	3R_3346511_SNP [dm3] 3R_7520789_SNP [dm6]	C	T	6.099e^-4	0.89	SYNONYMOUS_CODING alpha-Est7	TF binding site mE1_TFBS_cad
3R	6498038	3R_6498038_DEL [dm3] 3R_10672316_DEL [dm6]	CAGGA	C	6.099e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_sens
3R	9620853	3R_9620853_SNP [dm3] 3R_13795131_SNP [dm6]	G	A	6.099e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	9025436	X_9025436_SNP [dm3] X_9131403_SNP [dm6]	T	C	6.099e^-4	0.89	INTRON fend	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	15569943	X_15569943_SNP [dm3] X_15675910_SNP [dm6]	G	A	6.118e^-4	0.89	INTRON CG12708	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	1885917	2L_1885917_SNP [dm3] 2L_1885917_SNP [dm6]	G	A	6.262e^-4	0.89	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12373335	2R_12373335_SNP [dm3] 2R_16485830_SNP [dm6]	T	G	6.324e^-4	0.89	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12373336	2R_12373336_SNP [dm3] 2R_16485831_SNP [dm6]	T	A	6.324e^-4	0.89	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16763524	3L_16763524_DEL [dm3] 3L_16770424_DEL [dm6]	AA	A	6.348e^-4	0.89	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1481473	2L_1481473_SNP [dm3] 2L_1481473_SNP [dm6]	A	T	6.387e^-4	0.89	INTERGENIC
2L	10989253	2L_10989253_SNP [dm3] 2L_10989253_SNP [dm6]	G	A	6.397e^-4	0.89	UPSTREAM CG16833 DOWNSTREAM CG12253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2516045	2L_2516045_SNP [dm3] 2L_2516045_SNP [dm6]	A	C	6.397e^-4	0.89	INTERGENIC
2L	2536519	2L_2536519_SNP [dm3] 2L_2536519_SNP [dm6]	G	C	6.397e^-4	0.89	INTERGENIC
2L	292759	2L_292759_SNP [dm3] 2L_292759_SNP [dm6]	A	G	6.397e^-4	0.89	SYNONYMOUS_CODING CG11562 UPSTREAM CG3625 DOWNSTREAM U2af38	TF binding site mE1_TFBS_sens
3L	14840016	3L_14840016_SNP [dm3] 3L_14846916_SNP [dm6]	A	T	6.423e^-4	0.89	INTRON CG17839
X	12855801	X_12855801_SNP [dm3] X_12961768_SNP [dm6]	T	C	6.423e^-4	0.89	DOWNSTREAM CG32642 INTERGENIC
3L	12026893	3L_12026893_SNP [dm3] 3L_12033793_SNP [dm6]	C	T	6.454e^-4	0.89	DOWNSTREAM CG43993 INTRON rols
3L	14131236	3L_14131236_SNP [dm3] 3L_14138136_SNP [dm6]	A	G	6.564e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	18712710	2R_18712710_SNP [dm3] 2R_22825187_SNP [dm6]	C	G	6.605e^-4	0.89	START_GAINED CG42284 & 1 other UTR_5_PRIME CG42284 & 1 other INTRON CG42284
3L	2001614	3L_2001614_SNP [dm3] 3L_2001614_SNP [dm6]	C	T	6.605e^-4	0.89	INTERGENIC
3R	20546737	3R_20546737_SNP [dm3] 3R_24721015_SNP [dm6]	T	A	6.605e^-4	0.89	INTRON tok	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20546792	3R_20546792_SNP [dm3] 3R_24721070_SNP [dm6]	T	G	6.605e^-4	0.89	INTRON tok	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4963997	3R_4963997_DEL [dm3] 3R_9138275_DEL [dm6]	CAAAAGCTAA	TT	6.605e^-4	0.89	INTRON pum
3R	5373301	3R_5373301_SNP [dm3] 3R_9547579_SNP [dm6]	G	T	6.605e^-4	0.89	DOWNSTREAM CR42549 INTRON mura	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2626586	X_2626586_SNP [dm3] X_2732553_SNP [dm6]	C	G	6.605e^-4	0.89	UTR_5_PRIME CG2712 UPSTREAM ttm50	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	6825695	X_6825695_MNP [dm3] X_6931662_MNP [dm6]	TTT	CCC	6.605e^-4	0.89	INTRON CG14431
X	6825703	X_6825703_SNP [dm3] X_6931670_SNP [dm6]	T	C	6.605e^-4	0.89	INTRON CG14431
3L	2091884	3L_2091884_SNP [dm3] 3L_2091884_SNP [dm6]	C	T	6.620e^-4	0.89	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8286301	3L_8286301_SNP [dm3] 3L_8293201_SNP [dm6]	C	A	6.650e^-4	0.89	INTRON CG7201
2R	16399869	2R_16399869_SNP [dm3] 2R_20512364_SNP [dm6]	G	A	6.670e^-4	0.89	DOWNSTREAM CR44648 & 2 others INTERGENIC
3L	8249400	3L_8249400_SNP [dm3] 3L_8256300_SNP [dm6]	T	C	6.670e^-4	0.89	INTRON Dscam4
2L	3104577	2L_3104577_SNP [dm3] 2L_3104577_SNP [dm6]	G	T	6.672e^-4	0.89	INTRON toc	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	2582994	X_2582994_SNP [dm3] X_2688961_SNP [dm6]	C	T	6.689e^-4	0.89	SYNONYMOUS_CODING per	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20852175	2L_20852175_SNP [dm3] 2L_20852175_SNP [dm6]	T	A	6.700e^-4	0.89	UPSTREAM twit INTERGENIC	TF binding site mE1_TFBS_cad
2L	20858582	2L_20858582_SNP [dm3] 2L_20858582_SNP [dm6]	C	A	6.700e^-4	0.89	UPSTREAM CG9336 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA
2L	20858593	2L_20858593_SNP [dm3] 2L_20858593_SNP [dm6]	T	A	6.700e^-4	0.89	UPSTREAM CG9336 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA
2L	9926542	2L_9926542_SNP [dm3] 2L_9926542_SNP [dm6]	G	A	6.700e^-4	0.89	INTRON CG42366	TF binding site mE1_TFBS_cad
2R	8675661	2R_8675661_SNP [dm3] 2R_12788156_SNP [dm6]	T	A	6.740e^-4	0.89	INTRON sca EXON CR45137
X	15721414	X_15721414_INS [dm3] X_15827381_INS [dm6]	T	TAAAATTGGAGCAAAGACAA...	6.778e^-4	0.89	UTR_3_PRIME sd DOWNSTREAM sd & 1 other
3L	2108192	3L_2108192_SNP [dm3] 3L_2108192_SNP [dm6]	G	A	6.790e^-4	0.89	INTRON sls
3L	2108205	3L_2108205_SNP [dm3] 3L_2108205_SNP [dm6]	C	A	6.790e^-4	0.89	INTRON sls
2L	20285278	2L_20285278_SNP [dm3] 2L_20285278_SNP [dm6]	A	G	6.807e^-4	0.89	INTERGENIC
3R	3194968	3R_3194968_SNP [dm3] 3R_7369246_SNP [dm6]	A	G	6.807e^-4	0.89	SYNONYMOUS_CODING MstProx
3R	6817192	3R_6817192_SNP [dm3] 3R_10991470_SNP [dm6]	A	T	6.807e^-4	0.89	INTRON CG34114
X	18741014	X_18741014_SNP [dm3] X_18846981_SNP [dm6]	C	T	6.807e^-4	0.89	SYNONYMOUS_CODING CG7280 INTRON CG34422	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11516526	3L_11516526_DEL [dm3] 3L_11523426_DEL [dm6]	GTGTGAAGTG	G	6.835e^-4	0.89	UTR_3_PRIME Mob2 UPSTREAM CG11714 DOWNSTREAM Mob2	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3L	19255919	3L_19255919_SNP [dm3] 3L_19262819_SNP [dm6]	C	T	6.835e^-4	0.89	UTR_3_PRIME Max UPSTREAM CG9666 & 1 other DOWNSTREAM Bet1	TF binding site mE1_TFBS_cad
3L	5125669	3L_5125669_SNP [dm3] 3L_5132569_SNP [dm6]	C	A	6.835e^-4	0.89	DOWNSTREAM CG15213 & 1 other INTERGENIC
3L	558445	3L_558445_INS [dm3] 3L_558445_INS [dm6]	T	TTCT	6.835e^-4	0.89	INTRON hipk
3R	14761798	3R_14761798_SNP [dm3] 3R_18936076_SNP [dm6]	G	T	6.835e^-4	0.89	INTRON CG42613
3R	14761800	3R_14761800_SNP [dm3] 3R_18936078_SNP [dm6]	C	T	6.835e^-4	0.89	INTRON CG42613
3R	18896238	3R_18896238_SNP [dm3] 3R_23070516_SNP [dm6]	G	A	6.835e^-4	0.89	UTR_3_PRIME CG13830
3R	3339680	3R_3339680_SNP [dm3] 3R_7513958_SNP [dm6]	C	T	6.835e^-4	0.89	INTRON alpha-Est8
2L	15298359	2L_15298359_SNP [dm3] 2L_15298359_SNP [dm6]	A	G	6.855e^-4	0.89	NON_SYNONYMOUS_CODING CG15262 UPSTREAM CR43764
2R	11971354	2R_11971354_SNP [dm3] 2R_16083849_SNP [dm6]	A	G	6.855e^-4	0.89	SYNONYMOUS_CODING Dg	TF binding site mE1_TFBS_cad
2R	12372199	2R_12372199_SNP [dm3] 2R_16484694_SNP [dm6]	T	A	6.855e^-4	0.89	DOWNSTREAM CG15712 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9372142	2R_9372142_SNP [dm3] 2R_13484637_SNP [dm6]	G	A	6.855e^-4	0.89	SYNONYMOUS_CODING cbc UPSTREAM cid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11838445	3L_11838445_SNP [dm3] 3L_11845345_SNP [dm6]	G	C	6.855e^-4	0.89	INTERGENIC
3L	12036495	3L_12036495_SNP [dm3] 3L_12043395_SNP [dm6]	C	A	6.855e^-4	0.89	SYNONYMOUS_CODING CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
3L	17345126	3L_17345126_SNP [dm3] 3L_17352026_SNP [dm6]	C	T	6.855e^-4	0.89	UPSTREAM CG7692 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17345128	3L_17345128_SNP [dm3] 3L_17352028_SNP [dm6]	T	A	6.855e^-4	0.89	UPSTREAM CG7692 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17345140	3L_17345140_SNP [dm3] 3L_17352040_SNP [dm6]	G	T	6.855e^-4	0.89	UPSTREAM CG7692 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3908556	3L_3908556_SNP [dm3] 3L_3908556_SNP [dm6]	T	C	6.855e^-4	0.89	DOWNSTREAM ida INTRON mge
3L	3909449	3L_3909449_SNP [dm3] 3L_3909449_SNP [dm6]	G	A	6.855e^-4	0.89	UTR_5_PRIME mge DOWNSTREAM Eip63F-1 INTRON mge	TF binding site mE1_TFBS_HSA
3L	8342537	3L_8342537_SNP [dm3] 3L_8349437_SNP [dm6]	G	A	6.855e^-4	0.89	SYNONYMOUS_CODING GAPcenA	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8686277	3L_8686277_SNP [dm3] 3L_8693177_SNP [dm6]	A	G	6.855e^-4	0.89	EXON CR44526	TF binding site mE1_TFBS_cad
X	15121507	X_15121507_SNP [dm3] X_15227474_SNP [dm6]	G	A	6.855e^-4	0.89	INTERGENIC
X	15121521	X_15121521_SNP [dm3] X_15227488_SNP [dm6]	T	C	6.855e^-4	0.89	INTERGENIC
X	5472396	X_5472396_SNP [dm3] X_5578363_SNP [dm6]	G	A	6.855e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
X	8898423	X_8898423_SNP [dm3] X_9004390_SNP [dm6]	T	A	6.855e^-4	0.89	INTRON rdgA & 1 other
X	8902380	X_8902380_DEL [dm3] X_9008347_DEL [dm6]	AACA	A	6.855e^-4	0.89	INTRON rdgA & 1 other
X	8902422	X_8902422_DEL [dm3] X_9008389_DEL [dm6]	TCGCAAGCATTTG...	T	6.855e^-4	0.89	INTRON rdgA & 1 other
X	8902551	X_8902551_SNP [dm3] X_9008518_SNP [dm6]	T	C	6.855e^-4	0.89	INTRON rdgA & 1 other
3L	3027323	3L_3027323_SNP [dm3] 3L_3027323_SNP [dm6]	T	C	6.863e^-4	0.89	UPSTREAM aly INTERGENIC
2R	6046155	2R_6046155_SNP [dm3] 2R_10158650_SNP [dm6]	C	A	6.869e^-4	0.89	UTR_5_PRIME mlt UPSTREAM mlt INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	27047870	3R_27047870_SNP [dm3] 3R_31222148_SNP [dm6]	C	T	6.869e^-4	0.89	INTRON CG12054	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12079973	2L_12079973_SNP [dm3] 2L_12079973_SNP [dm6]	C	T	7.041e^-4	0.89	DOWNSTREAM CR44590 EXON CR44591	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	10897172	2R_10897172_SNP [dm3] 2R_15009667_SNP [dm6]	C	A	7.041e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10897264	2R_10897264_SNP [dm3] 2R_15009759_SNP [dm6]	C	T	7.041e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12236329	2R_12236329_SNP [dm3] 2R_16348824_SNP [dm6]	T	A	7.041e^-4	0.89	UPSTREAM CG15710 INTERGENIC
2R	12236386	2R_12236386_SNP [dm3] 2R_16348881_SNP [dm6]	C	A	7.041e^-4	0.89	UPSTREAM CG15710 INTERGENIC
2R	15478769	2R_15478769_SNP [dm3] 2R_19591264_SNP [dm6]	T	A	7.041e^-4	0.89	INTRON sm
2R	16922093	2R_16922093_SNP [dm3] 2R_21034588_SNP [dm6]	T	C	7.041e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8950127	2R_8950127_SNP [dm3] 2R_13062622_SNP [dm6]	A	G	7.041e^-4	0.89	INTRON Drl-2
2R	9819429	2R_9819429_SNP [dm3] 2R_13931924_SNP [dm6]	G	A	7.041e^-4	0.89	INTRON shot
3L	10137744	3L_10137744_SNP [dm3] 3L_10144644_SNP [dm6]	C	G	7.041e^-4	0.89	INTERGENIC
3L	10810458	3L_10810458_SNP [dm3] 3L_10817358_SNP [dm6]	A	G	7.041e^-4	0.89	DOWNSTREAM CR45247 INTERGENIC
3L	10964028	3L_10964028_INS [dm3] 3L_10970928_INS [dm6]	G	GG	7.041e^-4	0.89	INTERGENIC
3L	10964091	3L_10964091_SNP [dm3] 3L_10970991_SNP [dm6]	C	T	7.041e^-4	0.89	INTERGENIC
3L	1432438	3L_1432438_INS [dm3] 3L_1432438_INS [dm6]	A	AA	7.041e^-4	0.89	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	16625900	3L_16625900_SNP [dm3] 3L_16632800_SNP [dm6]	T	G	7.041e^-4	0.89	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	22668248	3L_22668248_SNP [dm3] 3L_22675148_SNP [dm6]	G	A	7.041e^-4	0.89	INTRON CG14457
3L	3326093	3L_3326093_SNP [dm3] 3L_3326093_SNP [dm6]	T	C	7.041e^-4	0.89	UPSTREAM PHGPx & 1 other INTRON CG11526	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3695387	3L_3695387_SNP [dm3] 3L_3695387_SNP [dm6]	G	C	7.041e^-4	0.89	INTERGENIC
3L	3696843	3L_3696843_SNP [dm3] 3L_3696843_SNP [dm6]	C	A	7.041e^-4	0.89	INTERGENIC
3L	8625976	3L_8625976_SNP [dm3] 3L_8632876_SNP [dm6]	C	T	7.041e^-4	0.89	SYNONYMOUS_CODING Cdc6 INTRON Zasp66	TF binding site mE1_TFBS_sens
3R	10969928	3R_10969928_SNP [dm3] 3R_15144206_SNP [dm6]	T	C	7.041e^-4	0.89	INTRON GlyS	TF binding site mE1_TFBS_cad
3R	10969939	3R_10969939_SNP [dm3] 3R_15144217_SNP [dm6]	G	A	7.041e^-4	0.89	INTRON GlyS	TF binding site mE1_TFBS_cad
X	12156761	X_12156761_SNP [dm3] X_12262728_SNP [dm6]	A	G	7.041e^-4	0.89	INTRON Ten-a
X	12156780	X_12156780_SNP [dm3] X_12262747_SNP [dm6]	C	T	7.041e^-4	0.89	INTRON Ten-a
X	15327078	X_15327078_SNP [dm3] X_15433045_SNP [dm6]	G	A	7.041e^-4	0.89	INTRON Cngl
X	5485080	X_5485080_SNP [dm3] X_5591047_SNP [dm6]	G	T	7.041e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_HSA
X	5485104	X_5485104_SNP [dm3] X_5591071_SNP [dm6]	G	A	7.041e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_HSA
X	8650073	X_8650073_SNP [dm3] X_8756040_SNP [dm6]	T	C	7.041e^-4	0.89	DOWNSTREAM Lim1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8650088	X_8650088_SNP [dm3] X_8756055_SNP [dm6]	G	A	7.041e^-4	0.89	DOWNSTREAM Lim1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8650117	X_8650117_SNP [dm3] X_8756084_SNP [dm6]	A	T	7.041e^-4	0.89	DOWNSTREAM Lim1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8650178	X_8650178_SNP [dm3] X_8756145_SNP [dm6]	G	A	7.041e^-4	0.89	DOWNSTREAM Lim1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8650311	X_8650311_SNP [dm3] X_8756278_SNP [dm6]	T	C	7.041e^-4	0.89	DOWNSTREAM Lim1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12306993	2L_12306993_SNP [dm3] 2L_12306993_SNP [dm6]	T	C	7.125e^-4	0.89	INTRON aret
2L	12307074	2L_12307074_SNP [dm3] 2L_12307074_SNP [dm6]	G	A	7.125e^-4	0.89	INTRON aret
2L	12310728	2L_12310728_SNP [dm3] 2L_12310728_SNP [dm6]	C	T	7.125e^-4	0.89	SYNONYMOUS_CODING aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13802727	2L_13802727_SNP [dm3] 2L_13802727_SNP [dm6]	A	G	7.125e^-4	0.89	UPSTREAM CAH1 INTERGENIC
2L	13871304	2L_13871304_SNP [dm3] 2L_13871304_SNP [dm6]	C	T	7.125e^-4	0.89	INTRON CenG1A	TF binding site BDTNP1_TFBS_twi
2L	13957528	2L_13957528_SNP [dm3] 2L_13957528_SNP [dm6]	T	C	7.125e^-4	0.89	UPSTREAM NimA INTERGENIC
2L	18457411	2L_18457411_SNP [dm3] 2L_18457411_SNP [dm6]	G	A	7.125e^-4	0.89	INTRON let-7-C
2L	18823018	2L_18823018_INS [dm3] 2L_18823018_INS [dm6]	A	AT	7.125e^-4	0.89	UPSTREAM CG17323 DOWNSTREAM CG17324 INTERGENIC
2L	5739840	2L_5739840_SNP [dm3] 2L_5739840_SNP [dm6]	C	G	7.125e^-4	0.89	INTRON CG11030 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19502355	3R_19502355_SNP [dm3] 3R_23676633_SNP [dm6]	G	A	7.187e^-4	0.89	UPSTREAM CG13822 INTERGENIC
2R	10846316	2R_10846316_SNP [dm3] 2R_14958811_SNP [dm6]	C	T	7.220e^-4	0.89	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17373789	2R_17373789_SNP [dm3] 2R_21486284_SNP [dm6]	C	T	7.220e^-4	0.89	DOWNSTREAM Fkbp14 INTRON Sara	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19687455	2R_19687455_SNP [dm3] 2R_23799932_SNP [dm6]	C	T	7.220e^-4	0.89	INTERGENIC
2R	6249576	2R_6249576_SNP [dm3] 2R_10362071_SNP [dm6]	G	A	7.220e^-4	0.89	UPSTREAM Gr47a INTRON CG42732	TF binding site mE1_TFBS_inv
2R	7206533	2R_7206533_SNP [dm3] 2R_11319028_SNP [dm6]	G	T	7.220e^-4	0.89	UPSTREAM nompA DOWNSTREAM Or47b INTERGENIC
2R	7206565	2R_7206565_SNP [dm3] 2R_11319060_SNP [dm6]	T	G	7.220e^-4	0.89	UPSTREAM nompA DOWNSTREAM Or47b INTERGENIC
3L	10482077	3L_10482077_SNP [dm3] 3L_10488977_SNP [dm6]	C	T	7.220e^-4	0.89	INTRON A2bp1
3L	11367754	3L_11367754_SNP [dm3] 3L_11374654_SNP [dm6]	G	T	7.220e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	18645065	3L_18645065_SNP [dm3] 3L_18651965_SNP [dm6]	T	C	7.220e^-4	0.89	INTRON MYPT-75D
3L	3547769	3L_3547769_SNP [dm3] 3L_3547769_SNP [dm6]	T	C	7.220e^-4	0.89	INTRON Eip63E
3L	8295422	3L_8295422_SNP [dm3] 3L_8302322_SNP [dm6]	A	C	7.220e^-4	0.89	UTR_3_PRIME CG13671 DOWNSTREAM CG7194
3L	8709045	3L_8709045_SNP [dm3] 3L_8715945_SNP [dm6]	C	T	7.220e^-4	0.89	INTERGENIC
X	12262367	X_12262367_SNP [dm3] X_12368334_SNP [dm6]	C	T	7.220e^-4	0.89	INTERGENIC
X	12262373	X_12262373_SNP [dm3] X_12368340_SNP [dm6]	A	C	7.220e^-4	0.89	INTERGENIC
X	13431796	X_13431796_INS [dm3] X_13537763_INS [dm6]	A	AA	7.220e^-4	0.89	INTERGENIC
X	13431825	X_13431825_SNP [dm3] X_13537792_SNP [dm6]	T	C	7.220e^-4	0.89	INTERGENIC
X	13431851	X_13431851_SNP [dm3] X_13537818_SNP [dm6]	G	A	7.220e^-4	0.89	INTERGENIC
X	13431889	X_13431889_SNP [dm3] X_13537856_SNP [dm6]	T	G	7.220e^-4	0.89	INTERGENIC
X	14500792	X_14500792_INS [dm3] X_14606759_INS [dm6]	G	GTGAATTGGG	7.220e^-4	0.89	INTRON NetA
X	14500795	X_14500795_SNP [dm3] X_14606762_SNP [dm6]	G	T	7.220e^-4	0.89	INTRON NetA
X	14500797	X_14500797_SNP [dm3] X_14606764_SNP [dm6]	G	C	7.220e^-4	0.89	INTRON NetA
X	14500828	X_14500828_SNP [dm3] X_14606795_SNP [dm6]	C	G	7.220e^-4	0.89	INTRON NetA
X	14500847	X_14500847_SNP [dm3] X_14606814_SNP [dm6]	C	T	7.220e^-4	0.89	INTRON NetA
X	14500851	X_14500851_SNP [dm3] X_14606818_SNP [dm6]	A	G	7.220e^-4	0.89	INTRON NetA
X	8356540	X_8356540_SNP [dm3] X_8462507_SNP [dm6]	A	G	7.220e^-4	0.89	SYNONYMOUS_CODING Es2 DOWNSTREAM Sptr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8356635	X_8356635_SNP [dm3] X_8462602_SNP [dm6]	A	C	7.220e^-4	0.89	NON_SYNONYMOUS_CODING Es2 DOWNSTREAM Sptr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8356660	X_8356660_SNP [dm3] X_8462627_SNP [dm6]	T	C	7.220e^-4	0.89	SYNONYMOUS_CODING Es2 DOWNSTREAM Sptr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17961722	2L_17961722_SNP [dm3] 2L_17961722_SNP [dm6]	G	A	7.233e^-4	0.89	DOWNSTREAM btv INTERGENIC
2R	13936570	2R_13936570_SNP [dm3] 2R_18049065_SNP [dm6]	G	C	7.319e^-4	0.89	SYNONYMOUS_CODING CG14495 DOWNSTREAM CG34005 & 1 other
3R	14842078	3R_14842078_SNP [dm3] 3R_19016356_SNP [dm6]	C	A	7.319e^-4	0.89	NON_SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	24702756	3R_24702756_SNP [dm3] 3R_28877034_SNP [dm6]	C	T	7.319e^-4	0.89	SYNONYMOUS_CODING CG14528 DOWNSTREAM CG14523 INTRON CG33203	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14426690	2R_14426690_SNP [dm3] 2R_18539185_SNP [dm6]	C	A	7.364e^-4	0.89	UTR_3_PRIME CG45087 & 1 other UPSTREAM Rgk2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16655295	2R_16655295_SNP [dm3] 2R_20767790_SNP [dm6]	T	A	7.364e^-4	0.89	DOWNSTREAM CR44665 EXON CR44665
2R	18210081	2R_18210081_SNP [dm3] 2R_22322576_SNP [dm6]	C	A	7.364e^-4	0.89	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18989396	2R_18989396_DEL [dm3] 2R_23101873_DEL [dm6]	CCTTC	T	7.364e^-4	0.89	UPSTREAM CG42703 DOWNSTREAM Gr59c INTERGENIC
2R	7225779	2R_7225779_SNP [dm3] 2R_11338274_SNP [dm6]	G	T	7.364e^-4	0.89	NON_SYNONYMOUS_CODING kappaTry DOWNSTREAM lambdaTry & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7169561	3L_7169561_INS [dm3] 3L_7176461_INS [dm6]	A	AC	7.364e^-4	0.89	INTRON Dscam2
3R	22678836	3R_22678836_SNP [dm3] 3R_26853114_SNP [dm6]	T	C	7.364e^-4	0.89	INTRON Lerp	TF binding site mE1_TFBS_chinmo
3R	27432290	3R_27432290_SNP [dm3] 3R_31606568_SNP [dm6]	T	C	7.364e^-4	0.89	INTRON CycG	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	19517861	2L_19517861_SNP [dm3] 2L_19517861_SNP [dm6]	A	C	7.401e^-4	0.89	UPSTREAM CG10186 & 1 other DOWNSTREAM CR43363 INTERGENIC
3L	13343350	3L_13343350_SNP [dm3] 3L_13350250_SNP [dm6]	G	C	7.525e^-4	0.89	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19211615	3L_19211615_SNP [dm3] 3L_19218515_SNP [dm6]	G	A	7.525e^-4	0.89	INTRON fz2
3L	8283885	3L_8283885_SNP [dm3] 3L_8290785_SNP [dm6]	T	C	7.525e^-4	0.89	SYNONYMOUS_CODING CG7201 UPSTREAM cert
2R	5608782	2R_5608782_SNP [dm3] 2R_9721277_SNP [dm6]	A	G	7.599e^-4	0.89	INTRON sqa
3L	19147534	3L_19147534_SNP [dm3] 3L_19154434_SNP [dm6]	A	G	7.599e^-4	0.89	INTRON fz2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7807990	3L_7807990_SNP [dm3] 3L_7814890_SNP [dm6]	G	T	7.646e^-4	0.89	UTR_3_PRIME Pdp1
2R	4159536	2R_4159536_SNP [dm3] 2R_8272031_SNP [dm6]	G	A	7.655e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4814256	2L_4814256_SNP [dm3] 2L_4814256_SNP [dm6]	A	G	7.657e^-4	0.89	INTRON CG15629
2R	16338097	2R_16338097_SNP [dm3] 2R_20450592_SNP [dm6]	C	T	7.657e^-4	0.89	INTRON CG12484
3L	8038583	3L_8038583_SNP [dm3] 3L_8045483_SNP [dm6]	T	C	7.657e^-4	0.89	INTRON nmo
X	10310273	X_10310273_SNP [dm3] X_10416240_SNP [dm6]	A	G	7.657e^-4	0.89	INTRON CG32683
X	9964287	X_9964287_SNP [dm3] X_10070254_SNP [dm6]	G	C	7.657e^-4	0.89	UTR_5_PRIME CG15312	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16923453	2R_16923453_SNP [dm3] 2R_21035948_SNP [dm6]	A	G	7.761e^-4	0.89	INTERGENIC
2R	16923474	2R_16923474_SNP [dm3] 2R_21035969_SNP [dm6]	C	T	7.761e^-4	0.89	INTERGENIC
2R	6963312	2R_6963312_SNP [dm3] 2R_11075807_SNP [dm6]	A	G	7.761e^-4	0.89	INTRON luna	TF binding site mE1_TFBS_HSA
3L	8446916	3L_8446916_SNP [dm3] 3L_8453816_SNP [dm6]	T	G	7.761e^-4	0.89	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26679088	3R_26679088_SNP [dm3] 3R_30853366_SNP [dm6]	G	A	7.761e^-4	0.89	SYNONYMOUS_CODING tll	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2412372	X_2412372_SNP [dm3] X_2518339_SNP [dm6]	C	A	7.761e^-4	0.89	UPSTREAM trol INTRON trol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4388058	X_4388058_SNP [dm3] X_4494025_SNP [dm6]	G	A	7.761e^-4	0.89	INTRON CR32773
X	5440993	X_5440993_SNP [dm3] X_5546960_SNP [dm6]	C	A	7.761e^-4	0.89	INTRON Vsx2	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	9816953	2R_9816953_SNP [dm3] 2R_13929448_SNP [dm6]	T	A	7.789e^-4	0.89	INTRON shot
3L	1752639	3L_1752639_SNP [dm3] 3L_1752639_SNP [dm6]	G	A	7.789e^-4	0.89	SYNONYMOUS_CODING Cht2 DOWNSTREAM CG13921	TF binding site mE1_TFBS_cad
3L	527651	3L_527651_DEL [dm3] 3L_527651_DEL [dm6]	ATGATTAAA	T	7.789e^-4	0.89	UPSTREAM CR45117 & 1 other DOWNSTREAM CR45118 INTRON klar
3L	5901758	3L_5901758_SNP [dm3] 3L_5908658_SNP [dm6]	T	A	7.789e^-4	0.89	SYNONYMOUS_CODING CG13288
3L	5901773	3L_5901773_SNP [dm3] 3L_5908673_SNP [dm6]	T	C	7.789e^-4	0.89	SYNONYMOUS_CODING CG13288
2L	14656057	2L_14656057_SNP [dm3] 2L_14656057_SNP [dm6]	A	C	7.913e^-4	0.89	INTRON osp
2R	16794573	2R_16794573_SNP [dm3] 2R_20907068_SNP [dm6]	G	A	7.913e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17174569	2R_17174569_SNP [dm3] 2R_21287064_SNP [dm6]	A	G	7.913e^-4	0.89	INTRON CG10505	TF binding site mE1_TFBS_chinmo
2R	18278125	2R_18278125_SNP [dm3] 2R_22390620_SNP [dm6]	T	C	7.913e^-4	0.89	INTRON CG13506
2R	18278130	2R_18278130_SNP [dm3] 2R_22390625_SNP [dm6]	A	G	7.913e^-4	0.89	INTRON CG13506	insulator Insulator_Class_II.mE01
2R	19073922	2R_19073922_SNP [dm3] 2R_23186399_SNP [dm6]	C	T	7.913e^-4	0.89	INTRON CG34371	TF binding site BDTNP1_TFBS_twi
2R	7807911	2R_7807911_SNP [dm3] 2R_11920406_SNP [dm6]	A	G	7.913e^-4	0.89	INTERGENIC
3L	12643734	3L_12643734_SNP [dm3] 3L_12650634_SNP [dm6]	C	G	7.913e^-4	0.89	EXON CR43431	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	1646153	3L_1646153_SNP [dm3] 3L_1646153_SNP [dm6]	G	A	7.913e^-4	0.89	SYNONYMOUS_CODING CG17249 UPSTREAM alphaCOP DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1646255	3L_1646255_SNP [dm3] 3L_1646255_SNP [dm6]	C	T	7.913e^-4	0.89	SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3692606	3L_3692606_SNP [dm3] 3L_3692606_SNP [dm6]	G	A	7.913e^-4	0.89	INTERGENIC
3L	3692746	3L_3692746_SNP [dm3] 3L_3692746_SNP [dm6]	G	A	7.913e^-4	0.89	INTERGENIC
3L	457181	3L_457181_SNP [dm3] 3L_457181_SNP [dm6]	T	G	7.913e^-4	0.89	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17034945	3R_17034945_SNP [dm3] 3R_21209223_SNP [dm6]	C	A	7.913e^-4	0.89	INTRON SNF4Agamma
3R	25212254	3R_25212254_SNP [dm3] 3R_29386532_SNP [dm6]	A	G	7.913e^-4	0.89	INTRON Ptp99A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25212256	3R_25212256_SNP [dm3] 3R_29386534_SNP [dm6]	G	A	7.913e^-4	0.89	INTRON Ptp99A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25942654	3R_25942654_SNP [dm3] 3R_30116932_SNP [dm6]	T	C	7.913e^-4	0.89	INTRON sima
3R	3337105	3R_3337105_SNP [dm3] 3R_7511383_SNP [dm6]	C	T	7.913e^-4	0.89	SYNONYMOUS_CODING alpha-Est8
3R	3339577	3R_3339577_SNP [dm3] 3R_7513855_SNP [dm6]	G	A	7.913e^-4	0.89	INTRON alpha-Est8
3R	3339745	3R_3339745_SNP [dm3] 3R_7514023_SNP [dm6]	C	T	7.913e^-4	0.89	INTRON alpha-Est8
3R	3340560	3R_3340560_SNP [dm3] 3R_7514838_SNP [dm6]	A	G	7.913e^-4	0.89	INTRON alpha-Est8
3R	3422067	3R_3422067_SNP [dm3] 3R_7596345_SNP [dm6]	C	G	7.913e^-4	0.89	INTRON CG34127
3R	3439024	3R_3439024_SNP [dm3] 3R_7613302_SNP [dm6]	T	C	7.913e^-4	0.89	INTRON CG34127
3R	3440050	3R_3440050_SNP [dm3] 3R_7614328_SNP [dm6]	G	A	7.913e^-4	0.89	INTRON CG34127
3R	3440788	3R_3440788_SNP [dm3] 3R_7615066_SNP [dm6]	C	G	7.913e^-4	0.89	INTRON CG34127
3R	9546314	3R_9546314_SNP [dm3] 3R_13720592_SNP [dm6]	G	A	7.913e^-4	0.89	INTRON CG34383
3R	9546328	3R_9546328_SNP [dm3] 3R_13720606_SNP [dm6]	G	A	7.913e^-4	0.89	INTRON CG34383
3R	9546332	3R_9546332_SNP [dm3] 3R_13720610_SNP [dm6]	T	A	7.913e^-4	0.89	INTRON CG34383
3R	9546334	3R_9546334_SNP [dm3] 3R_13720612_SNP [dm6]	T	G	7.913e^-4	0.89	INTRON CG34383
3R	9546337	3R_9546337_SNP [dm3] 3R_13720615_SNP [dm6]	A	C	7.913e^-4	0.89	INTRON CG34383
3R	9546340	3R_9546340_SNP [dm3] 3R_13720618_SNP [dm6]	A	T	7.913e^-4	0.89	INTRON CG34383
3R	9546341	3R_9546341_SNP [dm3] 3R_13720619_SNP [dm6]	G	C	7.913e^-4	0.89	INTRON CG34383
3R	9546353	3R_9546353_SNP [dm3] 3R_13720631_SNP [dm6]	A	T	7.913e^-4	0.89	INTRON CG34383
3R	9546370	3R_9546370_SNP [dm3] 3R_13720648_SNP [dm6]	T	A	7.913e^-4	0.89	INTRON CG34383
3R	9546382	3R_9546382_SNP [dm3] 3R_13720660_SNP [dm6]	T	A	7.913e^-4	0.89	INTRON CG34383
X	3915065	X_3915065_SNP [dm3] X_4021032_SNP [dm6]	A	G	7.913e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	8229817	X_8229817_SNP [dm3] X_8335784_SNP [dm6]	T	A	7.913e^-4	0.89	INTRON nAChRalpha3
X	8625889	X_8625889_SNP [dm3] X_8731856_SNP [dm6]	C	T	7.913e^-4	0.89	INTERGENIC
X	8933913	X_8933913_SNP [dm3] X_9039880_SNP [dm6]	T	G	7.913e^-4	0.89	INTRON CR43836 & 1 other
X	9025416	X_9025416_SNP [dm3] X_9131383_SNP [dm6]	T	C	7.913e^-4	0.89	INTRON fend	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	10623429	2L_10623429_SNP [dm3] 2L_10623429_SNP [dm6]	T	C	7.963e^-4	0.89	INTRON Trim9

By genomic position
Variant impact
Gene name

Climb_Decline phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results