©2022-2025 Deplancke lab, EPFL, 1015 Lausanne
By genomic position | |
Variant impact | |
Gene name |
Involved in binding site | |
Binding site |
Covariate | χ2 | p-value | Significance |
---|---|---|---|
wolba | 4.9116 | 0.0267 |
Chromosome | Position | ID | Reference | Variant | p-value | FDR_BH | Transcript annotation | Binding site annotation | |
---|---|---|---|---|---|---|---|---|---|
3R | 14666075 | 3R_14666075_SNP [dm3] 3R_18840353_SNP [dm6] | A | C | 1.044e-14 | 1.706e-8 |
INTRON
CG18208 |
||
3R | 16609138 | 3R_16609138_SNP [dm3] 3R_20783416_SNP [dm6] | A | G | 8.941e-8 | 0.073 |
START_GAINED
Syp UTR_5_PRIME Syp INTRON Syp |
TF binding site
BDTNP1_TFBS_dl
|
|
X | 5072285 | X_5072285_SNP [dm3] X_5178252_SNP [dm6] | A | G | 3.849e-6 | 0.346 |
INTRON
rg & 1 other |
||
2R | 10395274 | 2R_10395274_SNP [dm3] 2R_14507769_SNP [dm6] | G | C | 7.930e-6 | 0.346 |
SYNONYMOUS_CODING
Asx |
||
2L | 18324805 | 2L_18324805_INS [dm3] 2L_18324805_INS [dm6] | T | TT | 8.604e-6 | 0.346 |
INTRON
Fas3 |
||
3L | 16483161 | 3L_16483161_SNP [dm3] 3L_16490061_SNP [dm6] | C | T | 8.604e-6 | 0.346 |
INTRON
CG33158 |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
|
|
3R | 10128606 | 3R_10128606_SNP [dm3] 3R_14302884_SNP [dm6] | C | T | 8.604e-6 | 0.346 |
SYNONYMOUS_CODING
CG3259 DOWNSTREAM CG12207 |
TF binding site
mE1_TFBS_cad
|
|
X | 8510882 | X_8510882_INS [dm3] X_8616849_INS [dm6] | C | CGCCATCTC | 9.644e-6 | 0.346 |
INTERGENIC
|
TF binding site
mE1_TFBS_HSA
|
|
2L | 11090311 | 2L_11090311_SNP [dm3] 2L_11090311_SNP [dm6] | C | T | 1.176e-5 | 0.346 |
SYNONYMOUS_CODING
CG16854 |
TF binding site
mE1_TFBS_cad
|
|
2L | 14490104 | 2L_14490104_SNP [dm3] 2L_14490104_SNP [dm6] | C | A | 1.176e-5 | 0.346 |
UPSTREAM
noc INTERGENIC |
TF binding site
BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
|
|
2L | 18076104 | 2L_18076104_SNP [dm3] 2L_18076104_SNP [dm6] | T | C | 1.176e-5 | 0.346 |
INTERGENIC
|
||
2L | 2449385 | 2L_2449385_SNP [dm3] 2L_2449385_SNP [dm6] | T | A | 1.176e-5 | 0.346 |
UPSTREAM
dpp INTRON dpp |
enhancer
FlyBase
regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens |
|
2L | 7524119 | 2L_7524119_SNP [dm3] 2L_7524119_SNP [dm6] | A | T | 1.176e-5 | 0.346 |
INTRON
RapGAP1 |
||
2R | 18641095 | 2R_18641095_SNP [dm3] 2R_22753590_SNP [dm6] | T | A | 1.176e-5 | 0.346 |
INTRON
CG42260 |
||
3L | 10621853 | 3L_10621853_SNP [dm3] 3L_10628753_SNP [dm6] | T | C | 1.176e-5 | 0.346 |
UPSTREAM
CG14151 DOWNSTREAM CG42536 INTERGENIC |
TF binding site
mE1_TFBS_inv
|
|
3L | 1422927 | 3L_1422927_SNP [dm3] 3L_1422927_SNP [dm6] | C | T | 1.176e-5 | 0.346 |
NON_SYNONYMOUS_CODING
CG9173 INTRON Ptp61F |
TF binding site
mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
|
|
3L | 16495315 | 3L_16495315_SNP [dm3] 3L_16502215_SNP [dm6] | T | A | 1.176e-5 | 0.346 |
UTR_3_PRIME
CG43373 INTRON CG43373 |
TF binding site
mE1_TFBS_cad
|
|
3L | 702755 | 3L_702755_SNP [dm3] 3L_702755_SNP [dm6] | A | G | 1.176e-5 | 0.346 |
INTERGENIC
|
||
3R | 14466824 | 3R_14466824_SNP [dm3] 3R_18641102_SNP [dm6] | A | C | 1.176e-5 | 0.346 |
START_GAINED
CG14301 UTR_5_PRIME CG14301 INTRON qin |
TF binding site
BDTNP1_TFBS_z
|
|
X | 3713549 | X_3713549_SNP [dm3] X_3819516_SNP [dm6] | G | T | 1.176e-5 | 0.346 |
UPSTREAM
tRNA:CR32785 INTRON ec |
||
X | 3713824 | X_3713824_SNP [dm3] X_3819791_SNP [dm6] | G | T | 1.176e-5 | 0.346 |
DOWNSTREAM
tRNA:CR32785 INTRON ec |
||
X | 3713967 | X_3713967_SNP [dm3] X_3819934_SNP [dm6] | G | T | 1.176e-5 | 0.346 |
DOWNSTREAM
tRNA:CR32785 INTRON ec |
||
X | 4530241 | X_4530241_SNP [dm3] X_4636208_SNP [dm6] | C | A | 1.176e-5 | 0.346 |
UPSTREAM
pon & 1 other INTERGENIC |
TF binding site
BDTNP1_TFBS_dl
|
|
2R | 7266443 | 2R_7266443_SNP [dm3] 2R_11378938_SNP [dm6] | C | A | 2.076e-5 | 0.346 |
INTRON
Tsp47F |
||
X | 5229614 | X_5229614_SNP [dm3] X_5335581_SNP [dm6] | C | T | 2.076e-5 | 0.346 |
INTERGENIC
|
||
2R | 10398312 | 2R_10398312_SNP [dm3] 2R_14510807_SNP [dm6] | G | C | 2.925e-5 | 0.346 |
DOWNSTREAM
Asx INTRON Asx |
||
X | 8553145 | X_8553145_SNP [dm3] X_8659112_SNP [dm6] | A | G | 3.263e-5 | 0.346 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
|
|
X | 3810232 | X_3810232_SNP [dm3] X_3916199_SNP [dm6] | T | C | 3.306e-5 | 0.346 |
INTRON
CG42541 |
||
2L | 7675436 | 2L_7675436_SNP [dm3] 2L_7675436_SNP [dm6] | A | C | 4.005e-5 | 0.346 |
UPSTREAM
Slob INTRON Myo28B1 |
||
3L | 10048374 | 3L_10048374_SNP [dm3] 3L_10055274_SNP [dm6] | C | T | 4.367e-5 | 0.346 |
INTRON
dpr6 |
||
3L | 15438496 | 3L_15438496_SNP [dm3] 3L_15445396_SNP [dm6] | A | C | 4.458e-5 | 0.346 |
INTERGENIC
|
||
X | 18369155 | X_18369155_SNP [dm3] X_18475122_SNP [dm6] | C | T | 4.458e-5 | 0.346 |
INTRON
CG32547 |
||
2L | 10510089 | 2L_10510089_SNP [dm3] 2L_10510089_SNP [dm6] | T | C | 4.709e-5 | 0.346 |
SYNONYMOUS_CODING
CG7384 DOWNSTREAM Fatp & 1 other |
TF binding site
mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
|
|
2L | 1232506 | 2L_1232506_SNP [dm3] 2L_1232506_SNP [dm6] | C | T | 4.709e-5 | 0.346 |
INTERGENIC
|
||
2L | 13074012 | 2L_13074012_SNP [dm3] 2L_13074012_SNP [dm6] | C | T | 4.709e-5 | 0.346 |
INTERGENIC
|
TF binding site
mE1_TFBS_inv
|
|
2L | 1365573 | 2L_1365573_SNP [dm3] 2L_1365573_SNP [dm6] | A | C | 4.709e-5 | 0.346 |
INTERGENIC
|
||
2L | 1691054 | 2L_1691054_DEL [dm3] 2L_1691054_DEL [dm6] | CATCCCATCGCAC... | C | 4.709e-5 | 0.346 |
INTRON
chinmo |
||
2L | 19240162 | 2L_19240162_SNP [dm3] 2L_19240162_SNP [dm6] | T | G | 4.709e-5 | 0.346 |
INTERGENIC
|
||
2L | 19979546 | 2L_19979546_SNP [dm3] 2L_19979546_SNP [dm6] | A | T | 4.709e-5 | 0.346 |
INTRON
CG43861 EXON CR43620 |
||
2L | 3674745 | 2L_3674745_SNP [dm3] 2L_3674745_SNP [dm6] | T | C | 4.709e-5 | 0.346 |
INTRON
CG34340 |
||
2L | 5934496 | 2L_5934496_SNP [dm3] 2L_5934496_SNP [dm6] | A | T | 4.709e-5 | 0.346 |
INTRON
dsf |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
|
|
2L | 7252564 | 2L_7252564_SNP [dm3] 2L_7252564_SNP [dm6] | C | T | 4.709e-5 | 0.346 |
NON_SYNONYMOUS_CODING
CG13786 |
||
2L | 8206272 | 2L_8206272_SNP [dm3] 2L_8206272_SNP [dm6] | G | T | 4.709e-5 | 0.346 |
START_GAINED
CG8419 UTR_5_PRIME CG8419 UPSTREAM CR44120 & 1 other DOWNSTREAM CR44119 |
TF binding site
mE1_TFBS_chinmo
|
|
2L | 9350382 | 2L_9350382_SNP [dm3] 2L_9350382_SNP [dm6] | A | G | 4.709e-5 | 0.346 |
UPSTREAM
CG13110 DOWNSTREAM CG43350 INTERGENIC |
||
2R | 10963778 | 2R_10963778_SNP [dm3] 2R_15076273_SNP [dm6] | G | A | 4.709e-5 | 0.346 |
INTERGENIC
|
||
2R | 10963780 | 2R_10963780_SNP [dm3] 2R_15076275_SNP [dm6] | C | A | 4.709e-5 | 0.346 |
INTERGENIC
|
||
2R | 10963782 | 2R_10963782_SNP [dm3] 2R_15076277_SNP [dm6] | T | A | 4.709e-5 | 0.346 |
INTERGENIC
|
||
2R | 10963784 | 2R_10963784_INS [dm3] 2R_15076279_INS [dm6] | A | AGACATA | 4.709e-5 | 0.346 |
INTERGENIC
|
||
2R | 12407370 | 2R_12407370_SNP [dm3] 2R_16519865_SNP [dm6] | G | A | 4.709e-5 | 0.346 |
INTRON
Sema-2a |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
|
|
2R | 13175832 | 2R_13175832_SNP [dm3] 2R_17288327_SNP [dm6] | C | G | 4.709e-5 | 0.346 |
INTRON
mbl |
||
2R | 16223108 | 2R_16223108_SNP [dm3] 2R_20335603_SNP [dm6] | C | G | 4.709e-5 | 0.346 |
INTERGENIC
|
||
2R | 18156237 | 2R_18156237_SNP [dm3] 2R_22268732_SNP [dm6] | T | A | 4.709e-5 | 0.346 |
INTRON
dve |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
|
|
2R | 1942502 | 2R_1942502_SNP [dm3] 2R_6054997_SNP [dm6] | G | T | 4.709e-5 | 0.346 |
INTRON
CCHa2-R |
TF binding site
mE1_TFBS_sens
|
|
3L | 17692394 | 3L_17692394_SNP [dm3] 3L_17699294_SNP [dm6] | G | A | 4.709e-5 | 0.346 |
INTRON
Ccn |
||
3L | 1909918 | 3L_1909918_SNP [dm3] 3L_1909918_SNP [dm6] | G | A | 4.709e-5 | 0.346 |
UTR_5_PRIME
CG1887 |
||
3L | 4180553 | 3L_4180553_SNP [dm3] 3L_4180553_SNP [dm6] | T | G | 4.709e-5 | 0.346 |
INTRON
CG18675 & 1 other |
TF binding site
BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
|
|
3L | 6180567 | 3L_6180567_SNP [dm3] 3L_6187467_SNP [dm6] | T | C | 4.709e-5 | 0.346 |
SYNONYMOUS_CODING
D19A |
TF binding site
mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
|
|
3L | 6855101 | 3L_6855101_SNP [dm3] 3L_6862001_SNP [dm6] | G | A | 4.709e-5 | 0.346 |
INTERGENIC
|
||
3L | 8805340 | 3L_8805340_SNP [dm3] 3L_8812240_SNP [dm6] | T | A | 4.709e-5 | 0.346 |
DOWNSTREAM
CG13309 INTERGENIC |
||
3R | 11533818 | 3R_11533818_SNP [dm3] 3R_15708096_SNP [dm6] | C | G | 4.709e-5 | 0.346 |
UTR_3_PRIME
CG5404 |
TF binding site
mE1_TFBS_HSA mE1_TFBS_sbb
|
|
3R | 23399582 | 3R_23399582_SNP [dm3] 3R_27573860_SNP [dm6] | A | C | 4.709e-5 | 0.346 |
INTRON
wdb |
||
3R | 8100004 | 3R_8100004_SNP [dm3] 3R_12274282_SNP [dm6] | G | A | 4.709e-5 | 0.346 |
DOWNSTREAM
Sfp87B INTRON svp |
||
X | 16212482 | X_16212482_SNP [dm3] X_16318449_SNP [dm6] | C | T | 4.709e-5 | 0.346 |
SYNONYMOUS_CODING
Cyp1 DOWNSTREAM CG13957 |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
|
|
X | 18405481 | X_18405481_SNP [dm3] X_18511448_SNP [dm6] | C | G | 4.709e-5 | 0.346 |
INTRON
Ggt-1 |
||
X | 3360029 | X_3360029_SNP [dm3] X_3465996_SNP [dm6] | A | C | 4.709e-5 | 0.346 |
UTR_3_PRIME
CG12206 INTRON CR44999 |
||
X | 3552474 | X_3552474_SNP [dm3] X_3658441_SNP [dm6] | A | G | 4.709e-5 | 0.346 |
INTRON
AstA-R1 |
||
X | 8090061 | X_8090061_SNP [dm3] X_8196028_SNP [dm6] | A | T | 4.709e-5 | 0.346 |
INTRON
sdt |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
|
|
X | 8710179 | X_8710179_SNP [dm3] X_8816146_SNP [dm6] | T | C | 4.709e-5 | 0.346 |
INTERGENIC
|
||
2L | 7554100 | 2L_7554100_SNP [dm3] 2L_7554100_SNP [dm6] | T | C | 5.510e-5 | 0.346 |
INTRON
RapGAP1 |
||
3R | 20730597 | 3R_20730597_SNP [dm3] 3R_24904875_SNP [dm6] | T | A | 6.093e-5 | 0.346 |
INTRON
CG13643 |
||
3R | 20730603 | 3R_20730603_INS [dm3] 3R_24904881_INS [dm6] | T | TAT | 6.093e-5 | 0.346 |
INTRON
CG13643 |
||
3R | 7271234 | 3R_7271234_SNP [dm3] 3R_11445512_SNP [dm6] | G | T | 6.439e-5 | 0.346 |
INTRON
CG17230 & 1 other |
||
X | 16141732 | X_16141732_SNP [dm3] X_16247699_SNP [dm6] | G | T | 6.628e-5 | 0.346 |
INTERGENIC
|
||
3L | 1024185 | 3L_1024185_INS [dm3] 3L_1024185_INS [dm6] | A | ATCATAAGAGGTAATGATAT... | 6.850e-5 | 0.346 |
INTRON
trio |
TF binding site
mE1_TFBS_cad
|
|
3L | 1118897 | 3L_1118897_SNP [dm3] 3L_1118897_SNP [dm6] | C | G | 6.850e-5 | 0.346 |
INTERGENIC
|
TF binding site
mE1_TFBS_cad
|
|
3L | 4057641 | 3L_4057641_SNP [dm3] 3L_4057641_SNP [dm6] | G | A | 6.850e-5 | 0.346 |
INTRON
CG1136 |
TF binding site
mE1_TFBS_cad mE1_TFBS_HSA
|
|
X | 3714699 | X_3714699_INS [dm3] X_3820666_INS [dm6] | G | GAG | 6.850e-5 | 0.346 |
DOWNSTREAM
tRNA:CR32785 INTRON ec |
TF binding site
mE1_TFBS_HSA
|
|
3L | 5944595 | 3L_5944595_SNP [dm3] 3L_5951495_SNP [dm6] | A | C | 7.037e-5 | 0.346 |
UPSTREAM
CG33993 INTERGENIC |
TF binding site
BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
|
|
3R | 13159219 | 3R_13159219_SNP [dm3] 3R_17333497_SNP [dm6] | G | T | 8.590e-5 | 0.346 |
INTRON
beat-IIa |
TF binding site
BDTNP1_TFBS_dl
|
|
3R | 17034875 | 3R_17034875_SNP [dm3] 3R_21209153_SNP [dm6] | A | T | 8.590e-5 | 0.346 |
INTRON
SNF4Agamma |
||
3L | 15318739 | 3L_15318739_SNP [dm3] 3L_15325639_SNP [dm6] | T | G | 1.047e-4 | 0.346 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
|
|
3L | 15318760 | 3L_15318760_SNP [dm3] 3L_15325660_SNP [dm6] | A | C | 1.047e-4 | 0.346 |
INTERGENIC
|
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
|
|
3L | 3203388 | 3L_3203388_SNP [dm3] 3L_3203388_SNP [dm6] | A | C | 1.047e-4 | 0.346 |
UPSTREAM
CG32271 DOWNSTREAM CG33159 INTRON gry |
||
X | 10571706 | X_10571706_SNP [dm3] X_10677673_SNP [dm6] | T | G | 1.047e-4 | 0.346 |
INTRON
X11Lbeta |
||
2R | 7266548 | 2R_7266548_SNP [dm3] 2R_11379043_SNP [dm6] | G | A | 1.141e-4 | 0.346 |
UTR_5_PRIME
Tsp47F |
||
3R | 26001422 | 3R_26001422_SNP [dm3] 3R_30175700_SNP [dm6] | C | A | 1.141e-4 | 0.346 |
DOWNSTREAM
CG1983 INTERGENIC |
regulatory region
REDfly_CRMs
|
|
2L | 9393510 | 2L_9393510_SNP [dm3] 2L_9393510_SNP [dm6] | G | T | 1.236e-4 | 0.346 |
INTRON
Shawl |
||
3R | 10329552 | 3R_10329552_INS [dm3] 3R_14503830_INS [dm6] | A | AT | 1.242e-4 | 0.346 |
INTRON
CR44177 |
TF binding site
mE1_TFBS_cad
|
|
3R | 11696176 | 3R_11696176_DEL [dm3] 3R_15870454_DEL [dm6] | TCTGT | T | 1.242e-4 | 0.346 |
INTRON
CG31183 |
||
3R | 17821485 | 3R_17821485_DEL [dm3] 3R_21995763_DEL [dm6] | AAGA | A | 1.242e-4 | 0.346 | |||
2L | 10122683 | 2L_10122683_SNP [dm3] 2L_10122683_SNP [dm6] | A | C | 1.298e-4 | 0.346 |
NON_SYNONYMOUS_CODING
CG13135 INTRON CG44153 & 1 other |
||
2L | 10568600 | 2L_10568600_SNP [dm3] 2L_10568600_SNP [dm6] | C | T | 1.298e-4 | 0.346 |
DOWNSTREAM
CG6138 INTRON Trim9 |
||
2L | 10569030 | 2L_10569030_SNP [dm3] 2L_10569030_SNP [dm6] | G | A | 1.298e-4 | 0.346 |
INTRON
Trim9 |
||
2L | 10571056 | 2L_10571056_SNP [dm3] 2L_10571056_SNP [dm6] | C | T | 1.298e-4 | 0.346 |
INTRON
Trim9 |
||
2L | 10585705 | 2L_10585705_SNP [dm3] 2L_10585705_SNP [dm6] | T | C | 1.298e-4 | 0.346 |
INTRON
Trim9 |
||
2L | 10586733 | 2L_10586733_SNP [dm3] 2L_10586733_SNP [dm6] | G | A | 1.298e-4 | 0.346 |
INTRON
Trim9 |
TF binding site
mE1_TFBS_chinmo mE1_TFBS_HSA
|
|
2L | 10625354 | 2L_10625354_SNP [dm3] 2L_10625354_SNP [dm6] | C | T | 1.298e-4 | 0.346 |
INTRON
Trim9 |
||
2L | 10681187 | 2L_10681187_SNP [dm3] 2L_10681187_SNP [dm6] | C | T | 1.298e-4 | 0.346 |
SYNONYMOUS_CODING
CG17105 UPSTREAM CR44180 & 1 other |
||
2L | 1078190 | 2L_1078190_SNP [dm3] 2L_1078190_SNP [dm6] | C | G | 1.298e-4 | 0.346 |
SYNONYMOUS_CODING
ast UPSTREAM S |
TF binding site
BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
|
|
2L | 10934126 | 2L_10934126_SNP [dm3] 2L_10934126_SNP [dm6] | A | G | 1.298e-4 | 0.346 |
INTRON
dpr2 |