DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.890e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	4.9116	0.0267

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1449 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	14666075	3R_14666075_SNP [dm3] 3R_18840353_SNP [dm6]	A	C	1.044e^-14	1.706e^-8	INTRON CG18208
3R	16609138	3R_16609138_SNP [dm3] 3R_20783416_SNP [dm6]	A	G	8.941e^-8	0.073	START_GAINED Syp UTR_5_PRIME Syp INTRON Syp	TF binding site BDTNP1_TFBS_dl
X	5072285	X_5072285_SNP [dm3] X_5178252_SNP [dm6]	A	G	3.849e^-6	0.346	INTRON rg & 1 other
2R	10395274	2R_10395274_SNP [dm3] 2R_14507769_SNP [dm6]	G	C	7.930e^-6	0.346	SYNONYMOUS_CODING Asx
2L	18324805	2L_18324805_INS [dm3] 2L_18324805_INS [dm6]	T	TT	8.604e^-6	0.346	INTRON Fas3
3L	16483161	3L_16483161_SNP [dm3] 3L_16490061_SNP [dm6]	C	T	8.604e^-6	0.346	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	10128606	3R_10128606_SNP [dm3] 3R_14302884_SNP [dm6]	C	T	8.604e^-6	0.346	SYNONYMOUS_CODING CG3259 DOWNSTREAM CG12207	TF binding site mE1_TFBS_cad
X	8510882	X_8510882_INS [dm3] X_8616849_INS [dm6]	C	CGCCATCTC	9.644e^-6	0.346	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	11090311	2L_11090311_SNP [dm3] 2L_11090311_SNP [dm6]	C	T	1.176e^-5	0.346	SYNONYMOUS_CODING CG16854	TF binding site mE1_TFBS_cad
2L	14490104	2L_14490104_SNP [dm3] 2L_14490104_SNP [dm6]	C	A	1.176e^-5	0.346	UPSTREAM noc INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2L	18076104	2L_18076104_SNP [dm3] 2L_18076104_SNP [dm6]	T	C	1.176e^-5	0.346	INTERGENIC
2L	2449385	2L_2449385_SNP [dm3] 2L_2449385_SNP [dm6]	T	A	1.176e^-5	0.346	UPSTREAM dpp INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	7524119	2L_7524119_SNP [dm3] 2L_7524119_SNP [dm6]	A	T	1.176e^-5	0.346	INTRON RapGAP1
2R	18641095	2R_18641095_SNP [dm3] 2R_22753590_SNP [dm6]	T	A	1.176e^-5	0.346	INTRON CG42260
3L	10621853	3L_10621853_SNP [dm3] 3L_10628753_SNP [dm6]	T	C	1.176e^-5	0.346	UPSTREAM CG14151 DOWNSTREAM CG42536 INTERGENIC	TF binding site mE1_TFBS_inv
3L	1422927	3L_1422927_SNP [dm3] 3L_1422927_SNP [dm6]	C	T	1.176e^-5	0.346	NON_SYNONYMOUS_CODING CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	16495315	3L_16495315_SNP [dm3] 3L_16502215_SNP [dm6]	T	A	1.176e^-5	0.346	UTR_3_PRIME CG43373 INTRON CG43373	TF binding site mE1_TFBS_cad
3L	702755	3L_702755_SNP [dm3] 3L_702755_SNP [dm6]	A	G	1.176e^-5	0.346	INTERGENIC
3R	14466824	3R_14466824_SNP [dm3] 3R_18641102_SNP [dm6]	A	C	1.176e^-5	0.346	START_GAINED CG14301 UTR_5_PRIME CG14301 INTRON qin	TF binding site BDTNP1_TFBS_z
X	3713549	X_3713549_SNP [dm3] X_3819516_SNP [dm6]	G	T	1.176e^-5	0.346	UPSTREAM tRNA:CR32785 INTRON ec
X	3713824	X_3713824_SNP [dm3] X_3819791_SNP [dm6]	G	T	1.176e^-5	0.346	DOWNSTREAM tRNA:CR32785 INTRON ec
X	3713967	X_3713967_SNP [dm3] X_3819934_SNP [dm6]	G	T	1.176e^-5	0.346	DOWNSTREAM tRNA:CR32785 INTRON ec
X	4530241	X_4530241_SNP [dm3] X_4636208_SNP [dm6]	C	A	1.176e^-5	0.346	UPSTREAM pon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7266443	2R_7266443_SNP [dm3] 2R_11378938_SNP [dm6]	C	A	2.076e^-5	0.346	INTRON Tsp47F
X	5229614	X_5229614_SNP [dm3] X_5335581_SNP [dm6]	C	T	2.076e^-5	0.346	INTERGENIC
2R	10398312	2R_10398312_SNP [dm3] 2R_14510807_SNP [dm6]	G	C	2.925e^-5	0.346	DOWNSTREAM Asx INTRON Asx
X	8553145	X_8553145_SNP [dm3] X_8659112_SNP [dm6]	A	G	3.263e^-5	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	3810232	X_3810232_SNP [dm3] X_3916199_SNP [dm6]	T	C	3.306e^-5	0.346	INTRON CG42541
2L	7675436	2L_7675436_SNP [dm3] 2L_7675436_SNP [dm6]	A	C	4.005e^-5	0.346	UPSTREAM Slob INTRON Myo28B1
3L	10048374	3L_10048374_SNP [dm3] 3L_10055274_SNP [dm6]	C	T	4.367e^-5	0.346	INTRON dpr6
3L	15438496	3L_15438496_SNP [dm3] 3L_15445396_SNP [dm6]	A	C	4.458e^-5	0.346	INTERGENIC
X	18369155	X_18369155_SNP [dm3] X_18475122_SNP [dm6]	C	T	4.458e^-5	0.346	INTRON CG32547
2L	10510089	2L_10510089_SNP [dm3] 2L_10510089_SNP [dm6]	T	C	4.709e^-5	0.346	SYNONYMOUS_CODING CG7384 DOWNSTREAM Fatp & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1232506	2L_1232506_SNP [dm3] 2L_1232506_SNP [dm6]	C	T	4.709e^-5	0.346	INTERGENIC
2L	13074012	2L_13074012_SNP [dm3] 2L_13074012_SNP [dm6]	C	T	4.709e^-5	0.346	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1365573	2L_1365573_SNP [dm3] 2L_1365573_SNP [dm6]	A	C	4.709e^-5	0.346	INTERGENIC
2L	1691054	2L_1691054_DEL [dm3] 2L_1691054_DEL [dm6]	CATCCCATCGCAC...	C	4.709e^-5	0.346	INTRON chinmo
2L	19240162	2L_19240162_SNP [dm3] 2L_19240162_SNP [dm6]	T	G	4.709e^-5	0.346	INTERGENIC
2L	19979546	2L_19979546_SNP [dm3] 2L_19979546_SNP [dm6]	A	T	4.709e^-5	0.346	INTRON CG43861 EXON CR43620
2L	3674745	2L_3674745_SNP [dm3] 2L_3674745_SNP [dm6]	T	C	4.709e^-5	0.346	INTRON CG34340
2L	5934496	2L_5934496_SNP [dm3] 2L_5934496_SNP [dm6]	A	T	4.709e^-5	0.346	INTRON dsf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	7252564	2L_7252564_SNP [dm3] 2L_7252564_SNP [dm6]	C	T	4.709e^-5	0.346	NON_SYNONYMOUS_CODING CG13786
2L	8206272	2L_8206272_SNP [dm3] 2L_8206272_SNP [dm6]	G	T	4.709e^-5	0.346	START_GAINED CG8419 UTR_5_PRIME CG8419 UPSTREAM CR44120 & 1 other DOWNSTREAM CR44119	TF binding site mE1_TFBS_chinmo
2L	9350382	2L_9350382_SNP [dm3] 2L_9350382_SNP [dm6]	A	G	4.709e^-5	0.346	UPSTREAM CG13110 DOWNSTREAM CG43350 INTERGENIC
2R	10963778	2R_10963778_SNP [dm3] 2R_15076273_SNP [dm6]	G	A	4.709e^-5	0.346	INTERGENIC
2R	10963780	2R_10963780_SNP [dm3] 2R_15076275_SNP [dm6]	C	A	4.709e^-5	0.346	INTERGENIC
2R	10963782	2R_10963782_SNP [dm3] 2R_15076277_SNP [dm6]	T	A	4.709e^-5	0.346	INTERGENIC
2R	10963784	2R_10963784_INS [dm3] 2R_15076279_INS [dm6]	A	AGACATA	4.709e^-5	0.346	INTERGENIC
2R	12407370	2R_12407370_SNP [dm3] 2R_16519865_SNP [dm6]	G	A	4.709e^-5	0.346	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	13175832	2R_13175832_SNP [dm3] 2R_17288327_SNP [dm6]	C	G	4.709e^-5	0.346	INTRON mbl
2R	16223108	2R_16223108_SNP [dm3] 2R_20335603_SNP [dm6]	C	G	4.709e^-5	0.346	INTERGENIC
2R	18156237	2R_18156237_SNP [dm3] 2R_22268732_SNP [dm6]	T	A	4.709e^-5	0.346	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1942502	2R_1942502_SNP [dm3] 2R_6054997_SNP [dm6]	G	T	4.709e^-5	0.346	INTRON CCHa2-R	TF binding site mE1_TFBS_sens
3L	17692394	3L_17692394_SNP [dm3] 3L_17699294_SNP [dm6]	G	A	4.709e^-5	0.346	INTRON Ccn
3L	1909918	3L_1909918_SNP [dm3] 3L_1909918_SNP [dm6]	G	A	4.709e^-5	0.346	UTR_5_PRIME CG1887
3L	4180553	3L_4180553_SNP [dm3] 3L_4180553_SNP [dm6]	T	G	4.709e^-5	0.346	INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6180567	3L_6180567_SNP [dm3] 3L_6187467_SNP [dm6]	T	C	4.709e^-5	0.346	SYNONYMOUS_CODING D19A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6855101	3L_6855101_SNP [dm3] 3L_6862001_SNP [dm6]	G	A	4.709e^-5	0.346	INTERGENIC
3L	8805340	3L_8805340_SNP [dm3] 3L_8812240_SNP [dm6]	T	A	4.709e^-5	0.346	DOWNSTREAM CG13309 INTERGENIC
3R	11533818	3R_11533818_SNP [dm3] 3R_15708096_SNP [dm6]	C	G	4.709e^-5	0.346	UTR_3_PRIME CG5404	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23399582	3R_23399582_SNP [dm3] 3R_27573860_SNP [dm6]	A	C	4.709e^-5	0.346	INTRON wdb
3R	8100004	3R_8100004_SNP [dm3] 3R_12274282_SNP [dm6]	G	A	4.709e^-5	0.346	DOWNSTREAM Sfp87B INTRON svp
X	16212482	X_16212482_SNP [dm3] X_16318449_SNP [dm6]	C	T	4.709e^-5	0.346	SYNONYMOUS_CODING Cyp1 DOWNSTREAM CG13957	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	18405481	X_18405481_SNP [dm3] X_18511448_SNP [dm6]	C	G	4.709e^-5	0.346	INTRON Ggt-1
X	3360029	X_3360029_SNP [dm3] X_3465996_SNP [dm6]	A	C	4.709e^-5	0.346	UTR_3_PRIME CG12206 INTRON CR44999
X	3552474	X_3552474_SNP [dm3] X_3658441_SNP [dm6]	A	G	4.709e^-5	0.346	INTRON AstA-R1
X	8090061	X_8090061_SNP [dm3] X_8196028_SNP [dm6]	A	T	4.709e^-5	0.346	INTRON sdt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	8710179	X_8710179_SNP [dm3] X_8816146_SNP [dm6]	T	C	4.709e^-5	0.346	INTERGENIC
2L	7554100	2L_7554100_SNP [dm3] 2L_7554100_SNP [dm6]	T	C	5.510e^-5	0.346	INTRON RapGAP1
3R	20730597	3R_20730597_SNP [dm3] 3R_24904875_SNP [dm6]	T	A	6.093e^-5	0.346	INTRON CG13643
3R	20730603	3R_20730603_INS [dm3] 3R_24904881_INS [dm6]	T	TAT	6.093e^-5	0.346	INTRON CG13643
3R	7271234	3R_7271234_SNP [dm3] 3R_11445512_SNP [dm6]	G	T	6.439e^-5	0.346	INTRON CG17230 & 1 other
X	16141732	X_16141732_SNP [dm3] X_16247699_SNP [dm6]	G	T	6.628e^-5	0.346	INTERGENIC
3L	1024185	3L_1024185_INS [dm3] 3L_1024185_INS [dm6]	A	ATCATAAGAGGTAATGATAT...	6.850e^-5	0.346	INTRON trio	TF binding site mE1_TFBS_cad
3L	1118897	3L_1118897_SNP [dm3] 3L_1118897_SNP [dm6]	C	G	6.850e^-5	0.346	INTERGENIC	TF binding site mE1_TFBS_cad
3L	4057641	3L_4057641_SNP [dm3] 3L_4057641_SNP [dm6]	G	A	6.850e^-5	0.346	INTRON CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3714699	X_3714699_INS [dm3] X_3820666_INS [dm6]	G	GAG	6.850e^-5	0.346	DOWNSTREAM tRNA:CR32785 INTRON ec	TF binding site mE1_TFBS_HSA
3L	5944595	3L_5944595_SNP [dm3] 3L_5951495_SNP [dm6]	A	C	7.037e^-5	0.346	UPSTREAM CG33993 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13159219	3R_13159219_SNP [dm3] 3R_17333497_SNP [dm6]	G	T	8.590e^-5	0.346	INTRON beat-IIa	TF binding site BDTNP1_TFBS_dl
3R	17034875	3R_17034875_SNP [dm3] 3R_21209153_SNP [dm6]	A	T	8.590e^-5	0.346	INTRON SNF4Agamma
3L	15318739	3L_15318739_SNP [dm3] 3L_15325639_SNP [dm6]	T	G	1.047e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
3L	15318760	3L_15318760_SNP [dm3] 3L_15325660_SNP [dm6]	A	C	1.047e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
3L	3203388	3L_3203388_SNP [dm3] 3L_3203388_SNP [dm6]	A	C	1.047e^-4	0.346	UPSTREAM CG32271 DOWNSTREAM CG33159 INTRON gry
X	10571706	X_10571706_SNP [dm3] X_10677673_SNP [dm6]	T	G	1.047e^-4	0.346	INTRON X11Lbeta
2R	7266548	2R_7266548_SNP [dm3] 2R_11379043_SNP [dm6]	G	A	1.141e^-4	0.346	UTR_5_PRIME Tsp47F
3R	26001422	3R_26001422_SNP [dm3] 3R_30175700_SNP [dm6]	C	A	1.141e^-4	0.346	DOWNSTREAM CG1983 INTERGENIC	regulatory region REDfly_CRMs
2L	9393510	2L_9393510_SNP [dm3] 2L_9393510_SNP [dm6]	G	T	1.236e^-4	0.346	INTRON Shawl
3R	10329552	3R_10329552_INS [dm3] 3R_14503830_INS [dm6]	A	AT	1.242e^-4	0.346	INTRON CR44177	TF binding site mE1_TFBS_cad
3R	11696176	3R_11696176_DEL [dm3] 3R_15870454_DEL [dm6]	TCTGT	T	1.242e^-4	0.346	INTRON CG31183
3R	17821485	3R_17821485_DEL [dm3] 3R_21995763_DEL [dm6]	AAGA	A	1.242e^-4	0.346
2L	10122683	2L_10122683_SNP [dm3] 2L_10122683_SNP [dm6]	A	C	1.298e^-4	0.346	NON_SYNONYMOUS_CODING CG13135 INTRON CG44153 & 1 other
2L	10568600	2L_10568600_SNP [dm3] 2L_10568600_SNP [dm6]	C	T	1.298e^-4	0.346	DOWNSTREAM CG6138 INTRON Trim9
2L	10569030	2L_10569030_SNP [dm3] 2L_10569030_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON Trim9
2L	10571056	2L_10571056_SNP [dm3] 2L_10571056_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON Trim9
2L	10585705	2L_10585705_SNP [dm3] 2L_10585705_SNP [dm6]	T	C	1.298e^-4	0.346	INTRON Trim9
2L	10586733	2L_10586733_SNP [dm3] 2L_10586733_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON Trim9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10625354	2L_10625354_SNP [dm3] 2L_10625354_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON Trim9
2L	10681187	2L_10681187_SNP [dm3] 2L_10681187_SNP [dm6]	C	T	1.298e^-4	0.346	SYNONYMOUS_CODING CG17105 UPSTREAM CR44180 & 1 other
2L	1078190	2L_1078190_SNP [dm3] 2L_1078190_SNP [dm6]	C	G	1.298e^-4	0.346	SYNONYMOUS_CODING ast UPSTREAM S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2L	10934126	2L_10934126_SNP [dm3] 2L_10934126_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON dpr2
2L	10959787	2L_10959787_SNP [dm3] 2L_10959787_SNP [dm6]	A	T	1.298e^-4	0.346	INTRON dpr2
2L	11082596	2L_11082596_SNP [dm3] 2L_11082596_SNP [dm6]	A	G	1.298e^-4	0.346	DOWNSTREAM AstCC INTERGENIC
2L	11082597	2L_11082597_SNP [dm3] 2L_11082597_SNP [dm6]	C	T	1.298e^-4	0.346	DOWNSTREAM AstCC INTERGENIC
2L	11089603	2L_11089603_SNP [dm3] 2L_11089603_SNP [dm6]	T	C	1.298e^-4	0.346	SYNONYMOUS_CODING CG16854	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11539272	2L_11539272_SNP [dm3] 2L_11539272_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC
2L	11539273	2L_11539273_SNP [dm3] 2L_11539273_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC
2L	11539281	2L_11539281_SNP [dm3] 2L_11539281_SNP [dm6]	T	A	1.298e^-4	0.346	INTERGENIC
2L	11615845	2L_11615845_SNP [dm3] 2L_11615845_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON kek2
2L	11619670	2L_11619670_SNP [dm3] 2L_11619670_SNP [dm6]	G	T	1.298e^-4	0.346	INTRON kek2
2L	11712761	2L_11712761_SNP [dm3] 2L_11712761_SNP [dm6]	T	G	1.298e^-4	0.346	INTERGENIC
2L	11827362	2L_11827362_SNP [dm3] 2L_11827362_SNP [dm6]	T	C	1.298e^-4	0.346	UTR_3_PRIME esc INTRON Pde1c	TF binding site mE1_TFBS_cad
2L	12208884	2L_12208884_SNP [dm3] 2L_12208884_SNP [dm6]	C	T	1.298e^-4	0.346	SYNONYMOUS_CODING CG31759 INTRON aret
2L	12249019	2L_12249019_SNP [dm3] 2L_12249019_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON aret
2L	12648608	2L_12648608_SNP [dm3] 2L_12648608_SNP [dm6]	C	G	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	12889201	2L_12889201_SNP [dm3] 2L_12889201_SNP [dm6]	G	C	1.298e^-4	0.346	INTERGENIC
2L	13107380	2L_13107380_SNP [dm3] 2L_13107380_SNP [dm6]	G	A	1.298e^-4	0.346	SYNONYMOUS_CODING CG5142	TF binding site mE1_TFBS_chinmo
2L	1361264	2L_1361264_SNP [dm3] 2L_1361264_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON NLaz	TF binding site mE1_TFBS_cad
2L	13712927	2L_13712927_SNP [dm3] 2L_13712927_SNP [dm6]	G	T	1.298e^-4	0.346	INTRON CG31814
2L	1384705	2L_1384705_SNP [dm3] 2L_1384705_SNP [dm6]	T	G	1.298e^-4	0.346	INTRON lea
2L	13880670	2L_13880670_SNP [dm3] 2L_13880670_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON CenG1A
2L	13881514	2L_13881514_SNP [dm3] 2L_13881514_SNP [dm6]	T	C	1.298e^-4	0.346	INTRON CenG1A
2L	1401761	2L_1401761_SNP [dm3] 2L_1401761_SNP [dm6]	T	C	1.298e^-4	0.346	INTRON lea	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14421735	2L_14421735_SNP [dm3] 2L_14421735_SNP [dm6]	A	G	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	14521836	2L_14521836_SNP [dm3] 2L_14521836_SNP [dm6]	C	T	1.298e^-4	0.346	INTERGENIC
2L	14718457	2L_14718457_SNP [dm3] 2L_14718457_SNP [dm6]	G	C	1.298e^-4	0.346	INTERGENIC
2L	14718483	2L_14718483_SNP [dm3] 2L_14718483_SNP [dm6]	T	C	1.298e^-4	0.346	INTERGENIC
2L	14718492	2L_14718492_SNP [dm3] 2L_14718492_SNP [dm6]	T	A	1.298e^-4	0.346	INTERGENIC
2L	14718515	2L_14718515_SNP [dm3] 2L_14718515_SNP [dm6]	C	A	1.298e^-4	0.346	INTERGENIC
2L	14718530	2L_14718530_DEL [dm3] 2L_14718530_DEL [dm6]	AAA	GC	1.298e^-4	0.346	INTERGENIC
2L	14718538	2L_14718538_SNP [dm3] 2L_14718538_SNP [dm6]	A	T	1.298e^-4	0.346	INTERGENIC
2L	14917333	2L_14917333_INS [dm3] 2L_14917333_INS [dm6]	T	TGC	1.298e^-4	0.346	INTRON CG42313
2L	15122338	2L_15122338_SNP [dm3] 2L_15122338_SNP [dm6]	T	A	1.298e^-4	0.346	INTERGENIC	TF binding site mE1_TFBS_cad
2L	15205484	2L_15205484_SNP [dm3] 2L_15205484_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC
2L	15977502	2L_15977502_SNP [dm3] 2L_15977502_SNP [dm6]	C	G	1.298e^-4	0.346	INTERGENIC
2L	1611955	2L_1611955_SNP [dm3] 2L_1611955_SNP [dm6]	C	T	1.298e^-4	0.346	UPSTREAM CG31935 DOWNSTREAM RFeSP INTRON CG14352	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	1612067	2L_1612067_SNP [dm3] 2L_1612067_SNP [dm6]	C	T	1.298e^-4	0.346	SYNONYMOUS_CODING CG14352 UPSTREAM CG31935 DOWNSTREAM RFeSP	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	16410071	2L_16410071_SNP [dm3] 2L_16410071_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON CG5888
2L	1654532	2L_1654532_SNP [dm3] 2L_1654532_SNP [dm6]	G	T	1.298e^-4	0.346	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
2L	16810016	2L_16810016_SNP [dm3] 2L_16810016_SNP [dm6]	T	A	1.298e^-4	0.346	INTRON CG13280 & 1 other
2L	16952174	2L_16952174_DEL [dm3] 2L_16952174_DEL [dm6]	TAGAATTTTATAAATTAGCT...	T	1.298e^-4	0.346	INTERGENIC
2L	16952219	2L_16952219_SNP [dm3] 2L_16952219_SNP [dm6]	T	A	1.298e^-4	0.346	INTERGENIC
2L	16952287	2L_16952287_SNP [dm3] 2L_16952287_SNP [dm6]	C	T	1.298e^-4	0.346	INTERGENIC
2L	17498857	2L_17498857_INS [dm3] 2L_17498857_INS [dm6]	A	AC	1.298e^-4	0.346	UPSTREAM CG15142 DOWNSTREAM CG6412 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1828376	2L_1828376_SNP [dm3] 2L_1828376_SNP [dm6]	T	C	1.298e^-4	0.346	INTERGENIC
2L	1828387	2L_1828387_SNP [dm3] 2L_1828387_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC
2L	19333824	2L_19333824_SNP [dm3] 2L_19333824_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	19333846	2L_19333846_SNP [dm3] 2L_19333846_SNP [dm6]	C	T	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	19385608	2L_19385608_SNP [dm3] 2L_19385608_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON fon
2L	19387163	2L_19387163_SNP [dm3] 2L_19387163_SNP [dm6]	G	A	1.298e^-4	0.346	UTR_3_PRIME CG17549 UPSTREAM fon
2L	19624875	2L_19624875_SNP [dm3] 2L_19624875_SNP [dm6]	C	A	1.298e^-4	0.346	INTRON Lar
2L	19624895	2L_19624895_SNP [dm3] 2L_19624895_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON Lar
2L	20017344	2L_20017344_SNP [dm3] 2L_20017344_SNP [dm6]	G	T	1.298e^-4	0.346	UPSTREAM CG43861 INTERGENIC
2L	2023999	2L_2023999_SNP [dm3] 2L_2023999_SNP [dm6]	T	G	1.298e^-4	0.346	UPSTREAM CG4238 INTRON CG4238
2L	20862237	2L_20862237_SNP [dm3] 2L_20862237_SNP [dm6]	G	A	1.298e^-4	0.346	DOWNSTREAM CR9337 INTERGENIC
2L	21056507	2L_21056507_SNP [dm3] 2L_21056507_SNP [dm6]	T	A	1.298e^-4	0.346	NON_SYNONYMOUS_CODING Itgbetanu	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21702738	2L_21702738_SNP [dm3] 2L_21702738_SNP [dm6]	A	C	1.298e^-4	0.346	INTRON CG31619
2L	21702742	2L_21702742_SNP [dm3] 2L_21702742_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON CG31619
2L	21705361	2L_21705361_SNP [dm3] 2L_21705361_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON CG31619	transposable element FlyBase
2L	21718739	2L_21718739_SNP [dm3] 2L_21718739_SNP [dm6]	T	C	1.298e^-4	0.346	INTRON CG31619
2L	21727940	2L_21727940_SNP [dm3] 2L_21727940_SNP [dm6]	C	A	1.298e^-4	0.346	INTRON CG31619
2L	21728068	2L_21728068_SNP [dm3] 2L_21728068_SNP [dm6]	T	C	1.298e^-4	0.346	NON_SYNONYMOUS_CODING CG31619 SYNONYMOUS_CODING CG31619
2L	21734114	2L_21734114_SNP [dm3] 2L_21734114_SNP [dm6]	A	C	1.298e^-4	0.346	INTERGENIC	transposable element FlyBase
2L	21734258	2L_21734258_SNP [dm3] 2L_21734258_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC	transposable element FlyBase
2L	21736070	2L_21736070_SNP [dm3] 2L_21736070_SNP [dm6]	A	T	1.298e^-4	0.346	INTERGENIC	transposable element FlyBase
2L	21744309	2L_21744309_SNP [dm3] 2L_21744309_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON step	TF binding site mE1_TFBS_kn transposable element FlyBase
2L	21750968	2L_21750968_SNP [dm3] 2L_21750968_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON step
2L	21754486	2L_21754486_DEL [dm3] 2L_21754486_DEL [dm6]	AA	A	1.298e^-4	0.346	UPSTREAM step INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	21761073	2L_21761073_SNP [dm3] 2L_21761073_SNP [dm6]	G	A	1.298e^-4	0.346	DOWNSTREAM CG1416 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	21766955	2L_21766955_SNP [dm3] 2L_21766955_SNP [dm6]	T	G	1.298e^-4	0.346	INTRON CG31612
2L	21775519	2L_21775519_SNP [dm3] 2L_21775519_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
2L	21786523	2L_21786523_SNP [dm3] 2L_21786523_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON CG31612	TF binding site BDTNP1_TFBS_dl
2L	2738440	2L_2738440_SNP [dm3] 2L_2738440_SNP [dm6]	C	T	1.298e^-4	0.346	SPLICE_SITE_REGION CG31689 DOWNSTREAM mir-4914 INTRON CG31689	TF binding site mE1_TFBS_sens
2L	2738443	2L_2738443_SNP [dm3] 2L_2738443_SNP [dm6]	C	T	1.298e^-4	0.346	SPLICE_SITE_REGION CG31689 DOWNSTREAM mir-4914 INTRON CG31689
2L	3322590	2L_3322590_SNP [dm3] 2L_3322590_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON CG8837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3417425	2L_3417425_SNP [dm3] 2L_3417425_SNP [dm6]	C	G	1.298e^-4	0.346	UTR_3_PRIME CG31952 INTRON pgant2
2L	3417426	2L_3417426_SNP [dm3] 2L_3417426_SNP [dm6]	G	A	1.298e^-4	0.346	UTR_3_PRIME CG31952 INTRON pgant2
2L	3419716	2L_3419716_INS [dm3] 2L_3419716_INS [dm6]	C	AT	1.298e^-4	0.346	INTRON pgant2
2L	3425880	2L_3425880_SNP [dm3] 2L_3425880_SNP [dm6]	T	A	1.298e^-4	0.346	INTRON pgant2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3425885	2L_3425885_SNP [dm3] 2L_3425885_SNP [dm6]	A	T	1.298e^-4	0.346	INTRON pgant2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3425891	2L_3425891_SNP [dm3] 2L_3425891_SNP [dm6]	A	C	1.298e^-4	0.346	INTRON pgant2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3425897	2L_3425897_SNP [dm3] 2L_3425897_SNP [dm6]	G	T	1.298e^-4	0.346	INTRON pgant2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3425901	2L_3425901_DEL [dm3] 2L_3425901_DEL [dm6]	AGGGC	TT	1.298e^-4	0.346	INTRON pgant2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3425912	2L_3425912_SNP [dm3] 2L_3425912_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON pgant2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3425964	2L_3425964_SNP [dm3] 2L_3425964_SNP [dm6]	T	A	1.298e^-4	0.346	INTRON pgant2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3426176	2L_3426176_SNP [dm3] 2L_3426176_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON pgant2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3426528	2L_3426528_SNP [dm3] 2L_3426528_SNP [dm6]	A	G	1.298e^-4	0.346	UTR_5_PRIME pgant2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	3429429	2L_3429429_SNP [dm3] 2L_3429429_SNP [dm6]	C	G	1.298e^-4	0.346	INTERGENIC
2L	3429838	2L_3429838_SNP [dm3] 2L_3429838_SNP [dm6]	T	G	1.298e^-4	0.346	INTERGENIC
2L	3879047	2L_3879047_SNP [dm3] 2L_3879047_SNP [dm6]	G	A	1.298e^-4	0.346	SYNONYMOUS_CODING capu
2L	4172184	2L_4172184_SNP [dm3] 2L_4172184_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC
2L	4562889	2L_4562889_SNP [dm3] 2L_4562889_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON dp
2L	4673427	2L_4673427_SNP [dm3] 2L_4673427_SNP [dm6]	A	C	1.298e^-4	0.346	INTERGENIC
2L	560817	2L_560817_SNP [dm3] 2L_560817_SNP [dm6]	A	G	1.298e^-4	0.346	NON_SYNONYMOUS_CODING CG11835 UPSTREAM rempA DOWNSTREAM CG2789	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5686444	2L_5686444_SNP [dm3] 2L_5686444_SNP [dm6]	C	T	1.298e^-4	0.346	INTERGENIC
2L	5686446	2L_5686446_SNP [dm3] 2L_5686446_SNP [dm6]	C	A	1.298e^-4	0.346	INTERGENIC
2L	5686453	2L_5686453_SNP [dm3] 2L_5686453_SNP [dm6]	T	C	1.298e^-4	0.346	INTERGENIC
2L	5789788	2L_5789788_SNP [dm3] 2L_5789788_SNP [dm6]	T	G	1.298e^-4	0.346	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6104724	2L_6104724_SNP [dm3] 2L_6104724_SNP [dm6]	A	C	1.298e^-4	0.346	INTRON stai
2L	6399112	2L_6399112_SNP [dm3] 2L_6399112_SNP [dm6]	T	G	1.298e^-4	0.346	INTRON CG42368
2L	7186813	2L_7186813_SNP [dm3] 2L_7186813_SNP [dm6]	T	C	1.298e^-4	0.346	INTRON CG4496	TF binding site mE1_TFBS_HSA
2L	7186828	2L_7186828_SNP [dm3] 2L_7186828_SNP [dm6]	G	A	1.298e^-4	0.346	SPLICE_SITE_REGION CG4496 INTRON CG4496	TF binding site mE1_TFBS_HSA
2L	7252680	2L_7252680_INS [dm3] 2L_7252680_INS [dm6]	T	TTTTTT	1.298e^-4	0.346	INTRON CG13786
2L	7252691	2L_7252691_SNP [dm3] 2L_7252691_SNP [dm6]	C	A	1.298e^-4	0.346	NON_SYNONYMOUS_CODING CG13786 SPLICE_SITE_REGION CG13786
2L	7625321	2L_7625321_SNP [dm3] 2L_7625321_SNP [dm6]	A	C	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	7625491	2L_7625491_SNP [dm3] 2L_7625491_SNP [dm6]	T	G	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
2L	7788534	2L_7788534_SNP [dm3] 2L_7788534_SNP [dm6]	T	A	1.298e^-4	0.346	INTRON CG7149
2L	7788573	2L_7788573_SNP [dm3] 2L_7788573_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON CG7149
2L	8076882	2L_8076882_SNP [dm3] 2L_8076882_SNP [dm6]	G	T	1.298e^-4	0.346	NON_SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_sens
2L	8762313	2L_8762313_SNP [dm3] 2L_8762313_SNP [dm6]	C	T	1.298e^-4	0.346	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8765492	2L_8765492_SNP [dm3] 2L_8765492_SNP [dm6]	T	A	1.298e^-4	0.346	NON_SYNONYMOUS_CODING CG9463
2L	8775964	2L_8775964_SNP [dm3] 2L_8775964_SNP [dm6]	C	T	1.298e^-4	0.346	SYNONYMOUS_CODING CG9466	TF binding site mE1_TFBS_cad
2L	8779190	2L_8779190_SNP [dm3] 2L_8779190_SNP [dm6]	A	G	1.298e^-4	0.346	SYNONYMOUS_CODING CG9468	TF binding site mE1_TFBS_cad
2L	8780970	2L_8780970_SNP [dm3] 2L_8780970_SNP [dm6]	C	T	1.298e^-4	0.346	DOWNSTREAM CG42710 INTRON CG9468
2L	8781004	2L_8781004_DEL [dm3] 2L_8781004_DEL [dm6]	AAGGAATGTAAATTTATTTA...	A	1.298e^-4	0.346	DOWNSTREAM CG42710 INTRON CG9468
2L	8782386	2L_8782386_SNP [dm3] 2L_8782386_SNP [dm6]	A	G	1.298e^-4	0.346	SYNONYMOUS_CODING CG42710
2L	8891448	2L_8891448_SNP [dm3] 2L_8891448_SNP [dm6]	A	G	1.298e^-4	0.346	UTR_5_PRIME CG42713
2L	8956323	2L_8956323_SNP [dm3] 2L_8956323_SNP [dm6]	C	G	1.298e^-4	0.346	UPSTREAM CG31886 INTRON CG31886
2L	8956645	2L_8956645_SNP [dm3] 2L_8956645_SNP [dm6]	G	A	1.298e^-4	0.346	UPSTREAM CG31886 INTRON CG31886	TF binding site BDTNP1_TFBS_twi mE1_TFBS_zfh1
2L	9370178	2L_9370178_SNP [dm3] 2L_9370178_SNP [dm6]	G	T	1.298e^-4	0.346	DOWNSTREAM Shawl INTERGENIC
2L	9371106	2L_9371106_SNP [dm3] 2L_9371106_SNP [dm6]	C	T	1.298e^-4	0.346	UTR_3_PRIME Shawl UPSTREAM CR43865
2L	9373374	2L_9373374_SNP [dm3] 2L_9373374_SNP [dm6]	G	A	1.298e^-4	0.346	NON_SYNONYMOUS_CODING Shawl EXON CR43865	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9379329	2L_9379329_SNP [dm3] 2L_9379329_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON Shawl
2L	9379855	2L_9379855_SNP [dm3] 2L_9379855_SNP [dm6]	C	T	1.298e^-4	0.346	SYNONYMOUS_CODING Shawl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9380393	2L_9380393_DEL [dm3] 2L_9380393_DEL [dm6]	TA	T	1.298e^-4	0.346	INTRON Shawl
2L	9711174	2L_9711174_SNP [dm3] 2L_9711174_SNP [dm6]	A	G	1.298e^-4	0.346	UTR_5_PRIME CG4364 DOWNSTREAM Nckx30C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10197282	2R_10197282_SNP [dm3] 2R_14309777_SNP [dm6]	T	C	1.298e^-4	0.346	INTRON Shroom	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
2R	10197618	2R_10197618_SNP [dm3] 2R_14310113_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
2R	10394586	2R_10394586_SNP [dm3] 2R_14507081_SNP [dm6]	A	G	1.298e^-4	0.346	SYNONYMOUS_CODING Asx
2R	10395271	2R_10395271_SNP [dm3] 2R_14507766_SNP [dm6]	A	G	1.298e^-4	0.346	SYNONYMOUS_CODING Asx
2R	10395350	2R_10395350_SNP [dm3] 2R_14507845_SNP [dm6]	T	C	1.298e^-4	0.346	SYNONYMOUS_CODING Asx
2R	10395358	2R_10395358_SNP [dm3] 2R_14507853_SNP [dm6]	G	A	1.298e^-4	0.346	SYNONYMOUS_CODING Asx
2R	10395433	2R_10395433_SNP [dm3] 2R_14507928_SNP [dm6]	C	T	1.298e^-4	0.346	SYNONYMOUS_CODING Asx
2R	10395571	2R_10395571_SNP [dm3] 2R_14508066_SNP [dm6]	T	G	1.298e^-4	0.346	SYNONYMOUS_CODING Asx
2R	10395790	2R_10395790_SNP [dm3] 2R_14508285_SNP [dm6]	G	A	1.298e^-4	0.346	SYNONYMOUS_CODING Asx
2R	10395950	2R_10395950_SNP [dm3] 2R_14508445_SNP [dm6]	C	G	1.298e^-4	0.346	SYNONYMOUS_CODING Asx
2R	10396526	2R_10396526_SNP [dm3] 2R_14509021_SNP [dm6]	G	A	1.298e^-4	0.346	SYNONYMOUS_CODING Asx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10397171	2R_10397171_SNP [dm3] 2R_14509666_SNP [dm6]	C	A	1.298e^-4	0.346	SYNONYMOUS_CODING Asx	TF binding site mE1_TFBS_HSA
2R	10397316	2R_10397316_SNP [dm3] 2R_14509811_SNP [dm6]	C	A	1.298e^-4	0.346	INTRON Asx	TF binding site mE1_TFBS_HSA
2R	10398333	2R_10398333_SNP [dm3] 2R_14510828_SNP [dm6]	G	A	1.298e^-4	0.346	DOWNSTREAM Asx INTRON Asx
2R	10400287	2R_10400287_SNP [dm3] 2R_14512782_SNP [dm6]	T	G	1.298e^-4	0.346	SYNONYMOUS_CODING Cpr51A DOWNSTREAM Asx	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10400389	2R_10400389_SNP [dm3] 2R_14512884_SNP [dm6]	C	T	1.298e^-4	0.346	SYNONYMOUS_CODING Cpr51A DOWNSTREAM Asx	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10921859	2R_10921859_DEL [dm3] 2R_15034354_DEL [dm6]	ATTGTCAGTGCAAAAACCTG...	A	1.298e^-4	0.346	INTRON hbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10940764	2R_10940764_SNP [dm3] 2R_15053259_SNP [dm6]	G	T	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10940814	2R_10940814_SNP [dm3] 2R_15053309_SNP [dm6]	A	C	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11101520	2R_11101520_SNP [dm3] 2R_15214015_SNP [dm6]	A	C	1.298e^-4	0.346	UPSTREAM row DOWNSTREAM CG8093 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11106240	2R_11106240_SNP [dm3] 2R_15218735_SNP [dm6]	C	T	1.298e^-4	0.346	NON_SYNONYMOUS_CODING CG8079 UPSTREAM CR44463 DOWNSTREAM Hex-C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	11108885	2R_11108885_SNP [dm3] 2R_15221380_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON CG8079
2R	11109207	2R_11109207_DEL [dm3] 2R_15221702_DEL [dm6]	TA	T	1.298e^-4	0.346	INTRON CG8079
2R	11110423	2R_11110423_SNP [dm3] 2R_15222918_SNP [dm6]	A	C	1.298e^-4	0.346	SYNONYMOUS_CODING CG8079 UTR_3_PRIME CG8079 DOWNSTREAM Fs
2R	12642399	2R_12642399_SNP [dm3] 2R_16754894_SNP [dm6]	G	T	1.298e^-4	0.346	UTR_3_PRIME CG34189 UPSTREAM CG5267 INTRON unc-104
2R	12642424	2R_12642424_SNP [dm3] 2R_16754919_SNP [dm6]	T	A	1.298e^-4	0.346	UTR_3_PRIME CG34189 UPSTREAM CG5267 INTRON unc-104
2R	13544963	2R_13544963_SNP [dm3] 2R_17657458_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	13544981	2R_13544981_SNP [dm3] 2R_17657476_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON CCHa1-R	TF binding site mE1_TFBS_sens
2R	13950518	2R_13950518_SNP [dm3] 2R_18063013_SNP [dm6]	T	A	1.298e^-4	0.346	INTRON CG34386
2R	14081086	2R_14081086_SNP [dm3] 2R_18193581_SNP [dm6]	A	T	1.298e^-4	0.346	UPSTREAM CG33958 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14081106	2R_14081106_SNP [dm3] 2R_18193601_SNP [dm6]	A	T	1.298e^-4	0.346	UPSTREAM CG33958 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14081124	2R_14081124_SNP [dm3] 2R_18193619_SNP [dm6]	T	A	1.298e^-4	0.346	UPSTREAM CG33958 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14081172	2R_14081172_SNP [dm3] 2R_18193667_SNP [dm6]	C	T	1.298e^-4	0.346	UPSTREAM CG33958 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14363727	2R_14363727_SNP [dm3] 2R_18476222_SNP [dm6]	A	G	1.298e^-4	0.346	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14363901	2R_14363901_SNP [dm3] 2R_18476396_SNP [dm6]	G	A	1.298e^-4	0.346	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14615326	2R_14615326_SNP [dm3] 2R_18727821_SNP [dm6]	T	A	1.298e^-4	0.346	UTR_3_PRIME List INTRON Hs3st-A
2R	14791353	2R_14791353_SNP [dm3] 2R_18903848_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON sano
2R	15125615	2R_15125615_SNP [dm3] 2R_19238110_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON cora
2R	15327321	2R_15327321_SNP [dm3] 2R_19439816_SNP [dm6]	G	A	1.298e^-4	0.346	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15332972	2R_15332972_SNP [dm3] 2R_19445467_SNP [dm6]	G	A	1.298e^-4	0.346	DOWNSTREAM Arl6 INTRON EloC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15332974	2R_15332974_SNP [dm3] 2R_19445469_SNP [dm6]	A	C	1.298e^-4	0.346	DOWNSTREAM Arl6 INTRON EloC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15332999	2R_15332999_SNP [dm3] 2R_19445494_SNP [dm6]	T	C	1.298e^-4	0.346	DOWNSTREAM Arl6 INTRON EloC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15333099	2R_15333099_SNP [dm3] 2R_19445594_SNP [dm6]	G	C	1.298e^-4	0.346	DOWNSTREAM Arl6 INTRON EloC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15410066	2R_15410066_SNP [dm3] 2R_19522561_SNP [dm6]	T	G	1.298e^-4	0.346	UTR_3_PRIME sm
2R	15410320	2R_15410320_SNP [dm3] 2R_19522815_SNP [dm6]	C	T	1.298e^-4	0.346	UTR_3_PRIME sm DOWNSTREAM sm
2R	16347030	2R_16347030_SNP [dm3] 2R_20459525_SNP [dm6]	C	T	1.298e^-4	0.346	SYNONYMOUS_CODING CG12484
2R	16367922	2R_16367922_SNP [dm3] 2R_20480417_SNP [dm6]	T	G	1.298e^-4	0.346	INTERGENIC
2R	16434875	2R_16434875_SNP [dm3] 2R_20547370_SNP [dm6]	A	G	1.298e^-4	0.346	SYNONYMOUS_CODING CG30148 DOWNSTREAM Obp57e & 2 others
2R	16438133	2R_16438133_SNP [dm3] 2R_20550628_SNP [dm6]	C	T	1.298e^-4	0.346	NON_SYNONYMOUS_CODING CG13430 UTR_3_PRIME CG18065 UPSTREAM Cpr57A & 1 other	regulatory region REDfly_CRMs
2R	16822017	2R_16822017_SNP [dm3] 2R_20934512_SNP [dm6]	C	A	1.298e^-4	0.346	INTRON Rx
2R	16822033	2R_16822033_SNP [dm3] 2R_20934528_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON Rx
2R	16822046	2R_16822046_SNP [dm3] 2R_20934541_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON Rx
2R	16822047	2R_16822047_SNP [dm3] 2R_20934542_SNP [dm6]	G	C	1.298e^-4	0.346	INTRON Rx
2R	16841712	2R_16841712_SNP [dm3] 2R_20954207_SNP [dm6]	G	C	1.298e^-4	0.346	DOWNSTREAM hbn INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	17408013	2R_17408013_SNP [dm3] 2R_21520508_SNP [dm6]	T	A	1.298e^-4	0.346	UTR_3_PRIME CG30289 UPSTREAM CG30288
2R	17812243	2R_17812243_SNP [dm3] 2R_21924738_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON Fili
2R	17841822	2R_17841822_SNP [dm3] 2R_21954317_SNP [dm6]	G	A	1.298e^-4	0.346	UTR_3_PRIME CG13494 UPSTREAM CR43405
2R	17841843	2R_17841843_SNP [dm3] 2R_21954338_SNP [dm6]	A	C	1.298e^-4	0.346	UTR_3_PRIME CG13494 UPSTREAM CR43405
2R	18139010	2R_18139010_SNP [dm3] 2R_22251505_SNP [dm6]	T	C	1.298e^-4	0.346	INTRON dve
2R	18180107	2R_18180107_SNP [dm3] 2R_22292602_SNP [dm6]	T	C	1.298e^-4	0.346	UPSTREAM CG5819 DOWNSTREAM CR43422 INTERGENIC
2R	18180744	2R_18180744_SNP [dm3] 2R_22293239_SNP [dm6]	T	G	1.298e^-4	0.346	UPSTREAM CG5819 DOWNSTREAM CR43422 INTERGENIC
2R	18180771	2R_18180771_SNP [dm3] 2R_22293266_SNP [dm6]	C	T	1.298e^-4	0.346	UPSTREAM CG5819 DOWNSTREAM CR43422 INTERGENIC
2R	18180787	2R_18180787_SNP [dm3] 2R_22293282_SNP [dm6]	C	T	1.298e^-4	0.346	UPSTREAM CG5819 DOWNSTREAM CR43422 INTERGENIC
2R	18188621	2R_18188621_SNP [dm3] 2R_22301116_SNP [dm6]	G	T	1.298e^-4	0.346	INTRON wdp	TF binding site mE1_TFBS_cad
2R	18188622	2R_18188622_SNP [dm3] 2R_22301117_SNP [dm6]	C	A	1.298e^-4	0.346	INTRON wdp	TF binding site mE1_TFBS_cad
2R	18188629	2R_18188629_SNP [dm3] 2R_22301124_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON wdp	TF binding site mE1_TFBS_cad
2R	18328817	2R_18328817_SNP [dm3] 2R_22441312_SNP [dm6]	C	G	1.298e^-4	0.346	INTERGENIC
2R	18551104	2R_18551104_SNP [dm3] 2R_22663599_SNP [dm6]	C	T	1.298e^-4	0.346	UPSTREAM CG4250 DOWNSTREAM CG42566 INTERGENIC
2R	18750038	2R_18750038_DEL [dm3] 2R_22862515_DEL [dm6]	TTT	A	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18884838	2R_18884838_SNP [dm3] 2R_22997315_SNP [dm6]	T	A	1.298e^-4	0.346	INTRON twi & 1 other
2R	18884852	2R_18884852_SNP [dm3] 2R_22997329_SNP [dm6]	C	G	1.298e^-4	0.346	INTRON twi & 1 other
2R	18967443	2R_18967443_SNP [dm3] 2R_23079920_SNP [dm6]	C	T	1.298e^-4	0.346	UPSTREAM Art7 & 2 others INTERGENIC
2R	18967476	2R_18967476_SNP [dm3] 2R_23079953_SNP [dm6]	C	T	1.298e^-4	0.346	UPSTREAM Art7 & 2 others INTERGENIC
2R	18967502	2R_18967502_SNP [dm3] 2R_23079979_SNP [dm6]	T	G	1.298e^-4	0.346	UPSTREAM Art7 & 2 others INTERGENIC
2R	18967513	2R_18967513_SNP [dm3] 2R_23079990_SNP [dm6]	G	A	1.298e^-4	0.346	UPSTREAM Art7 & 2 others INTERGENIC
2R	18967528	2R_18967528_SNP [dm3] 2R_23080005_SNP [dm6]	T	G	1.298e^-4	0.346	UPSTREAM Art7 & 2 others INTERGENIC
2R	18987937	2R_18987937_SNP [dm3] 2R_23100414_SNP [dm6]	T	C	1.298e^-4	0.346	UTR_5_PRIME RpL37b DOWNSTREAM CG42703	TF binding site BDTNP1_TFBS_twi
2R	18988036	2R_18988036_SNP [dm3] 2R_23100513_SNP [dm6]	G	A	1.298e^-4	0.346	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18988077	2R_18988077_SNP [dm3] 2R_23100554_SNP [dm6]	T	A	1.298e^-4	0.346	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18988121	2R_18988121_SNP [dm3] 2R_23100598_SNP [dm6]	C	T	1.298e^-4	0.346	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18988134	2R_18988134_SNP [dm3] 2R_23100611_SNP [dm6]	T	C	1.298e^-4	0.346	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18988144	2R_18988144_SNP [dm3] 2R_23100621_SNP [dm6]	T	C	1.298e^-4	0.346	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18988146	2R_18988146_INS [dm3] 2R_23100623_INS [dm6]	G	CT	1.298e^-4	0.346	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18988152	2R_18988152_INS [dm3] 2R_23100629_INS [dm6]	A	AAGAA	1.298e^-4	0.346	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18988155	2R_18988155_SNP [dm3] 2R_23100632_SNP [dm6]	T	A	1.298e^-4	0.346	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18988157	2R_18988157_SNP [dm3] 2R_23100634_SNP [dm6]	G	T	1.298e^-4	0.346	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18988159	2R_18988159_DEL [dm3] 2R_23100636_DEL [dm6]	GG	G	1.298e^-4	0.346	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18988162	2R_18988162_SNP [dm3] 2R_23100639_SNP [dm6]	G	A	1.298e^-4	0.346	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18988164	2R_18988164_SNP [dm3] 2R_23100641_SNP [dm6]	A	T	1.298e^-4	0.346	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18988167	2R_18988167_SNP [dm3] 2R_23100644_SNP [dm6]	C	G	1.298e^-4	0.346	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18988168	2R_18988168_SNP [dm3] 2R_23100645_SNP [dm6]	G	T	1.298e^-4	0.346	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18988170	2R_18988170_SNP [dm3] 2R_23100647_SNP [dm6]	A	G	1.298e^-4	0.346	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18988172	2R_18988172_SNP [dm3] 2R_23100649_SNP [dm6]	T	C	1.298e^-4	0.346	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19048871	2R_19048871_SNP [dm3] 2R_23161348_SNP [dm6]	T	C	1.298e^-4	0.346	SYNONYMOUS_CODING CG9899
2R	19068872	2R_19068872_SNP [dm3] 2R_23181349_SNP [dm6]	G	T	1.298e^-4	0.346	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19069187	2R_19069187_SNP [dm3] 2R_23181664_SNP [dm6]	A	C	1.298e^-4	0.346	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1944402	2R_1944402_SNP [dm3] 2R_6056897_SNP [dm6]	T	C	1.298e^-4	0.346	DOWNSTREAM CG7856 INTRON CCHa2-R
2R	19482819	2R_19482819_SNP [dm3] 2R_23595296_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON apt
2R	20084087	2R_20084087_SNP [dm3] 2R_24196564_SNP [dm6]	C	T	1.298e^-4	0.346	SYNONYMOUS_CODING cN-IIIB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20749836	2R_20749836_SNP [dm3] 2R_24862313_SNP [dm6]	C	T	1.298e^-4	0.346	INTERGENIC
2R	21024911	2R_21024911_SNP [dm3] 2R_25137388_SNP [dm6]	C	G	1.298e^-4	0.346	INTRON lov
2R	227036	2R_227036_SNP [dm3] 2R_4339531_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON Gprk1
2R	2849056	2R_2849056_SNP [dm3] 2R_6961551_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON mim & 1 other	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3663516	2R_3663516_SNP [dm3] 2R_7776011_SNP [dm6]	G	T	1.298e^-4	0.346	INTRON CG30497 & 1 other
2R	3911751	2R_3911751_SNP [dm3] 2R_8024246_SNP [dm6]	A	G	1.298e^-4	0.346	EXON CR45267	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	5416291	2R_5416291_SNP [dm3] 2R_9528786_SNP [dm6]	C	A	1.298e^-4	0.346	INTRON brp
2R	5905965	2R_5905965_SNP [dm3] 2R_10018460_SNP [dm6]	C	G	1.298e^-4	0.346	INTRON Pka-R2
2R	6259644	2R_6259644_SNP [dm3] 2R_10372139_SNP [dm6]	T	G	1.298e^-4	0.346	INTRON CG42732	TF binding site mE1_TFBS_inv
2R	6586810	2R_6586810_SNP [dm3] 2R_10699305_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON stan
2R	6656272	2R_6656272_SNP [dm3] 2R_10768767_SNP [dm6]	C	A	1.298e^-4	0.346	INTRON CG33144
2R	7446861	2R_7446861_SNP [dm3] 2R_11559356_SNP [dm6]	C	A	1.298e^-4	0.346	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7446863	2R_7446863_SNP [dm3] 2R_11559358_SNP [dm6]	A	T	1.298e^-4	0.346	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7446868	2R_7446868_SNP [dm3] 2R_11559363_SNP [dm6]	T	G	1.298e^-4	0.346	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7446875	2R_7446875_SNP [dm3] 2R_11559370_SNP [dm6]	T	C	1.298e^-4	0.346	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7446878	2R_7446878_SNP [dm3] 2R_11559373_SNP [dm6]	G	T	1.298e^-4	0.346	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7446892	2R_7446892_SNP [dm3] 2R_11559387_SNP [dm6]	A	C	1.298e^-4	0.346	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7446910	2R_7446910_SNP [dm3] 2R_11559405_SNP [dm6]	C	T	1.298e^-4	0.346	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7446964	2R_7446964_SNP [dm3] 2R_11559459_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8324768	2R_8324768_SNP [dm3] 2R_12437263_SNP [dm6]	T	A	1.298e^-4	0.346	UPSTREAM Dyb & 1 other DOWNSTREAM CG30051 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
2R	8964483	2R_8964483_SNP [dm3] 2R_13076978_SNP [dm6]	T	C	1.298e^-4	0.346	INTRON Drl-2
2R	8964757	2R_8964757_SNP [dm3] 2R_13077252_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON Drl-2	TF binding site mE1_TFBS_cad
2R	8965441	2R_8965441_SNP [dm3] 2R_13077936_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON Drl-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9496549	2R_9496549_SNP [dm3] 2R_13609044_SNP [dm6]	A	G	1.298e^-4	0.346	NON_SYNONYMOUS_CODING CG12464
2R	9635629	2R_9635629_SNP [dm3] 2R_13748124_SNP [dm6]	C	T	1.298e^-4	0.346	UTR_3_PRIME fas
2R	9903334	2R_9903334_SNP [dm3] 2R_14015829_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON mam
2R	9937729	2R_9937729_SNP [dm3] 2R_14050224_SNP [dm6]	T	C	1.298e^-4	0.346	INTRON mam
3L	10587353	3L_10587353_SNP [dm3] 3L_10594253_SNP [dm6]	C	G	1.298e^-4	0.346	DOWNSTREAM A2bp1 INTERGENIC
3L	10628858	3L_10628858_SNP [dm3] 3L_10635758_SNP [dm6]	G	A	1.298e^-4	0.346	SYNONYMOUS_CODING E_z_
3L	10629059	3L_10629059_SNP [dm3] 3L_10635959_SNP [dm6]	A	C	1.298e^-4	0.346	INTRON E_z_
3L	10630745	3L_10630745_SNP [dm3] 3L_10637645_SNP [dm6]	T	C	1.298e^-4	0.346	SYNONYMOUS_CODING E_z_ UPSTREAM CG8009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10831940	3L_10831940_SNP [dm3] 3L_10838840_SNP [dm6]	T	A	1.298e^-4	0.346	INTERGENIC
3L	1089793	3L_1089793_SNP [dm3] 3L_1089793_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON bab1	regulatory region REDfly_CRMs
3L	11042828	3L_11042828_SNP [dm3] 3L_11049728_SNP [dm6]	C	T	1.298e^-4	0.346	UPSTREAM CG43693 & 1 other INTRON CG43693
3L	11120186	3L_11120186_SNP [dm3] 3L_11127086_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	11131796	3L_11131796_SNP [dm3] 3L_11138696_SNP [dm6]	T	G	1.298e^-4	0.346	INTRON CG32082
3L	11131797	3L_11131797_SNP [dm3] 3L_11138697_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON CG32082
3L	1115639	3L_1115639_SNP [dm3] 3L_1115639_SNP [dm6]	A	G	1.298e^-4	0.346	INTERGENIC
3L	1115640	3L_1115640_SNP [dm3] 3L_1115640_SNP [dm6]	C	T	1.298e^-4	0.346	INTERGENIC
3L	1116615	3L_1116615_SNP [dm3] 3L_1116615_SNP [dm6]	A	T	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11181336	3L_11181336_SNP [dm3] 3L_11188236_SNP [dm6]	T	G	1.298e^-4	0.346	INTRON GlcAT-P	TF binding site mE1_TFBS_inv
3L	11268972	3L_11268972_SNP [dm3] 3L_11275872_SNP [dm6]	T	A	1.298e^-4	0.346	INTERGENIC
3L	11532197	3L_11532197_SNP [dm3] 3L_11539097_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON Mob2
3L	11548190	3L_11548190_SNP [dm3] 3L_11555090_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11548315	3L_11548315_SNP [dm3] 3L_11555215_SNP [dm6]	T	C	1.298e^-4	0.346	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11548337	3L_11548337_INS [dm3] 3L_11555237_INS [dm6]	T	TAACATAAATAACTTTAAAC...	1.298e^-4	0.346	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11548361	3L_11548361_SNP [dm3] 3L_11555261_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11548581	3L_11548581_SNP [dm3] 3L_11555481_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11548583	3L_11548583_INS [dm3] 3L_11555483_INS [dm6]	C	TATTCATATTTA...	1.298e^-4	0.346	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11548589	3L_11548589_SNP [dm3] 3L_11555489_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11548592	3L_11548592_SNP [dm3] 3L_11555492_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11548600	3L_11548600_SNP [dm3] 3L_11555500_SNP [dm6]	A	C	1.298e^-4	0.346	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11548603	3L_11548603_SNP [dm3] 3L_11555503_SNP [dm6]	G	T	1.298e^-4	0.346	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11626039	3L_11626039_SNP [dm3] 3L_11632939_SNP [dm6]	G	C	1.298e^-4	0.346	INTRON CG32091 EXON CR45158
3L	1189303	3L_1189303_SNP [dm3] 3L_1189303_SNP [dm6]	A	G	1.298e^-4	0.346	UPSTREAM CG13912 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	12201012	3L_12201012_SNP [dm3] 3L_12207912_SNP [dm6]	C	A	1.298e^-4	0.346	SYNONYMOUS_CODING app UTR_3_PRIME app DOWNSTREAM app	TF binding site mE1_TFBS_cad
3L	12201510	3L_12201510_SNP [dm3] 3L_12208410_SNP [dm6]	C	A	1.298e^-4	0.346	DOWNSTREAM app INTRON app
3L	12350719	3L_12350719_SNP [dm3] 3L_12357619_SNP [dm6]	A	C	1.298e^-4	0.346	INTERGENIC
3L	12350783	3L_12350783_SNP [dm3] 3L_12357683_SNP [dm6]	G	C	1.298e^-4	0.346	INTERGENIC
3L	12578521	3L_12578521_SNP [dm3] 3L_12585421_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON ara
3L	1258749	3L_1258749_SNP [dm3] 3L_1258749_SNP [dm6]	T	A	1.298e^-4	0.346	INTRON CG9134
3L	1263370	3L_1263370_SNP [dm3] 3L_1263370_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON CG9134
3L	1263408	3L_1263408_SNP [dm3] 3L_1263408_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON CG9134
3L	1263497	3L_1263497_SNP [dm3] 3L_1263497_SNP [dm6]	A	T	1.298e^-4	0.346	INTRON CG9134
3L	1263533	3L_1263533_SNP [dm3] 3L_1263533_SNP [dm6]	C	A	1.298e^-4	0.346	INTRON CG9134
3L	1263619	3L_1263619_SNP [dm3] 3L_1263619_SNP [dm6]	G	C	1.298e^-4	0.346	INTRON CG9134
3L	1263723	3L_1263723_DEL [dm3] 3L_1263723_DEL [dm6]	ATTATGATTGTTAAA...	A	1.298e^-4	0.346	INTRON CG9134
3L	1263744	3L_1263744_DEL [dm3] 3L_1263744_DEL [dm6]	GGC	T	1.298e^-4	0.346	INTRON CG9134
3L	1263887	3L_1263887_SNP [dm3] 3L_1263887_SNP [dm6]	T	C	1.298e^-4	0.346	INTRON CG9134
3L	1264119	3L_1264119_SNP [dm3] 3L_1264119_SNP [dm6]	A	C	1.298e^-4	0.346	INTRON CG9134
3L	1264141	3L_1264141_SNP [dm3] 3L_1264141_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON CG9134
3L	1264444	3L_1264444_SNP [dm3] 3L_1264444_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON CG9134
3L	12985281	3L_12985281_SNP [dm3] 3L_12992181_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC
3L	12985282	3L_12985282_SNP [dm3] 3L_12992182_SNP [dm6]	C	T	1.298e^-4	0.346	INTERGENIC
3L	13600046	3L_13600046_SNP [dm3] 3L_13606946_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON bru-3
3L	1362941	3L_1362941_SNP [dm3] 3L_1362941_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON Ptp61F
3L	13634412	3L_13634412_SNP [dm3] 3L_13641312_SNP [dm6]	A	T	1.298e^-4	0.346	INTRON bru-3	TF binding site mE1_TFBS_chinmo
3L	13634448	3L_13634448_SNP [dm3] 3L_13641348_SNP [dm6]	A	T	1.298e^-4	0.346	INTRON bru-3	TF binding site mE1_TFBS_chinmo
3L	1369938	3L_1369938_SNP [dm3] 3L_1369938_SNP [dm6]	G	T	1.298e^-4	0.346	UPSTREAM ru INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1369940	3L_1369940_SNP [dm3] 3L_1369940_SNP [dm6]	G	A	1.298e^-4	0.346	UPSTREAM ru INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13766768	3L_13766768_SNP [dm3] 3L_13773668_SNP [dm6]	T	C	1.298e^-4	0.346	INTRON bru-3
3L	14196501	3L_14196501_SNP [dm3] 3L_14203401_SNP [dm6]	A	C	1.298e^-4	0.346	UTR_5_PRIME CG32141 INTRON nuf
3L	14296064	3L_14296064_SNP [dm3] 3L_14302964_SNP [dm6]	C	A	1.298e^-4	0.346	INTRON fz
3L	14811504	3L_14811504_SNP [dm3] 3L_14818404_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON CG17839
3L	14923816	3L_14923816_SNP [dm3] 3L_14930716_SNP [dm6]	T	G	1.298e^-4	0.346	INTRON DCX-EMAP
3L	14923839	3L_14923839_SNP [dm3] 3L_14930739_SNP [dm6]	A	T	1.298e^-4	0.346	INTRON DCX-EMAP
3L	14923843	3L_14923843_SNP [dm3] 3L_14930743_SNP [dm6]	A	T	1.298e^-4	0.346	INTRON DCX-EMAP
3L	14923883	3L_14923883_SNP [dm3] 3L_14930783_SNP [dm6]	A	T	1.298e^-4	0.346	INTRON DCX-EMAP
3L	15012944	3L_15012944_SNP [dm3] 3L_15019844_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON Sytbeta
3L	15433825	3L_15433825_SNP [dm3] 3L_15440725_SNP [dm6]	G	C	1.298e^-4	0.346	INTERGENIC
3L	15491956	3L_15491956_SNP [dm3] 3L_15498856_SNP [dm6]	A	T	1.298e^-4	0.346	UPSTREAM CG7275 DOWNSTREAM CG13455 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	16629237	3L_16629237_SNP [dm3] 3L_16636137_SNP [dm6]	T	G	1.298e^-4	0.346	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16752012	3L_16752012_SNP [dm3] 3L_16758912_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC
3L	16895200	3L_16895200_SNP [dm3] 3L_16902100_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON Lmpt	TF binding site mE1_TFBS_inv
3L	16896641	3L_16896641_SNP [dm3] 3L_16903541_SNP [dm6]	A	T	1.298e^-4	0.346	SYNONYMOUS_CODING Lmpt INTRON Lmpt
3L	16898228	3L_16898228_SNP [dm3] 3L_16905128_SNP [dm6]	C	T	1.298e^-4	0.346	SYNONYMOUS_CODING Lmpt INTRON Lmpt
3L	17336694	3L_17336694_SNP [dm3] 3L_17343594_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON brv2	TF binding site mE1_TFBS_chinmo
3L	17338198	3L_17338198_SNP [dm3] 3L_17345098_SNP [dm6]	G	A	1.298e^-4	0.346	UTR_3_PRIME Mip UPSTREAM brv2
3L	17338344	3L_17338344_SNP [dm3] 3L_17345244_SNP [dm6]	G	A	1.298e^-4	0.346	UTR_3_PRIME Mip UPSTREAM brv2
3L	17347034	3L_17347034_SNP [dm3] 3L_17353934_SNP [dm6]	A	C	1.298e^-4	0.346	NON_SYNONYMOUS_CODING CG7692	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	17347824	3L_17347824_SNP [dm3] 3L_17354724_SNP [dm6]	G	C	1.298e^-4	0.346	INTRON CG7692
3L	17555996	3L_17555996_SNP [dm3] 3L_17562896_SNP [dm6]	A	T	1.298e^-4	0.346	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17558836	3L_17558836_SNP [dm3] 3L_17565736_SNP [dm6]	G	T	1.298e^-4	0.346	DOWNSTREAM snoRNA:Me28S-A576 INTRON Eip74EF
3L	17688252	3L_17688252_SNP [dm3] 3L_17695152_SNP [dm6]	T	A	1.298e^-4	0.346	INTRON Ccn
3L	17710844	3L_17710844_SNP [dm3] 3L_17717744_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON Ccn
3L	17780497	3L_17780497_SNP [dm3] 3L_17787397_SNP [dm6]	G	T	1.298e^-4	0.346	INTERGENIC
3L	17780511	3L_17780511_SNP [dm3] 3L_17787411_SNP [dm6]	T	C	1.298e^-4	0.346	INTERGENIC
3L	17780586	3L_17780586_INS [dm3] 3L_17787486_INS [dm6]	T	TG	1.298e^-4	0.346	INTERGENIC
3L	17780612	3L_17780612_SNP [dm3] 3L_17787512_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC
3L	18109489	3L_18109489_INS [dm3] 3L_18116389_INS [dm6]	C	CG	1.298e^-4	0.346	UTR_3_PRIME CG32195 DOWNSTREAM CG32195 INTRON CG7341
3L	18109496	3L_18109496_INS [dm3] 3L_18116396_INS [dm6]	C	GTGTT	1.298e^-4	0.346	UTR_3_PRIME CG32195 DOWNSTREAM CG32195 INTRON CG7341
3L	18388327	3L_18388327_SNP [dm3] 3L_18395227_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC
3L	18565983	3L_18565983_SNP [dm3] 3L_18572883_SNP [dm6]	A	T	1.298e^-4	0.346	INTRON AstC-R1
3L	18641792	3L_18641792_SNP [dm3] 3L_18648692_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi
3L	18641821	3L_18641821_SNP [dm3] 3L_18648721_SNP [dm6]	C	A	1.298e^-4	0.346	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi
3L	18642444	3L_18642444_DEL [dm3] 3L_18649344_DEL [dm6]	CTGC	C	1.298e^-4	0.346	INTRON MYPT-75D
3L	18643057	3L_18643057_SNP [dm3] 3L_18649957_SNP [dm6]	A	T	1.298e^-4	0.346	INTRON MYPT-75D
3L	18726410	3L_18726410_SNP [dm3] 3L_18733310_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC
3L	21266396	3L_21266396_SNP [dm3] 3L_21273296_SNP [dm6]	T	G	1.298e^-4	0.346	SYNONYMOUS_CODING AcCoAS	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	21267778	3L_21267778_SNP [dm3] 3L_21274678_SNP [dm6]	C	A	1.298e^-4	0.346	INTRON AcCoAS
3L	21267838	3L_21267838_SNP [dm3] 3L_21274738_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON AcCoAS
3L	21558411	3L_21558411_SNP [dm3] 3L_21565311_SNP [dm6]	C	T	1.298e^-4	0.346	UPSTREAM CG7634 INTERGENIC
3L	2211264	3L_2211264_SNP [dm3] 3L_2211264_SNP [dm6]	T	C	1.298e^-4	0.346	SYNONYMOUS_CODING CG15878
3L	2532153	3L_2532153_SNP [dm3] 3L_2532153_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON Spn	TF binding site mE1_TFBS_bab1
3L	3677438	3L_3677438_SNP [dm3] 3L_3677438_SNP [dm6]	A	G	1.298e^-4	0.346	INTERGENIC
3L	4172918	3L_4172918_SNP [dm3] 3L_4172918_SNP [dm6]	T	A	1.298e^-4	0.346	SPLICE_SITE_REGION Ero1L UPSTREAM CG18675 INTRON Ero1L
3L	4172923	3L_4172923_SNP [dm3] 3L_4172923_SNP [dm6]	A	C	1.298e^-4	0.346	UPSTREAM CG18675 INTRON Ero1L
3L	4172925	3L_4172925_SNP [dm3] 3L_4172925_SNP [dm6]	A	C	1.298e^-4	0.346	UPSTREAM CG18675 INTRON Ero1L
3L	4172955	3L_4172955_SNP [dm3] 3L_4172955_SNP [dm6]	C	T	1.298e^-4	0.346	UPSTREAM CG18675 INTRON Ero1L
3L	4172957	3L_4172957_SNP [dm3] 3L_4172957_SNP [dm6]	T	C	1.298e^-4	0.346	UPSTREAM CG18675 INTRON Ero1L
3L	4173305	3L_4173305_SNP [dm3] 3L_4173305_SNP [dm6]	C	T	1.298e^-4	0.346	UPSTREAM CG18675 INTRON Ero1L
3L	4173306	3L_4173306_SNP [dm3] 3L_4173306_SNP [dm6]	T	A	1.298e^-4	0.346	UPSTREAM CG18675 INTRON Ero1L
3L	4173313	3L_4173313_SNP [dm3] 3L_4173313_SNP [dm6]	C	T	1.298e^-4	0.346	UPSTREAM CG18675 INTRON Ero1L
3L	4180548	3L_4180548_SNP [dm3] 3L_4180548_SNP [dm6]	A	T	1.298e^-4	0.346	INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4336931	3L_4336931_SNP [dm3] 3L_4336931_SNP [dm6]	G	T	1.298e^-4	0.346	INTRON Cip4
3L	449945	3L_449945_SNP [dm3] 3L_449945_SNP [dm6]	T	A	1.298e^-4	0.346	INTRON klar
3L	459802	3L_459802_SNP [dm3] 3L_459802_SNP [dm6]	C	A	1.298e^-4	0.346	INTRON klar
3L	5127012	3L_5127012_SNP [dm3] 3L_5133912_SNP [dm6]	C	A	1.298e^-4	0.346	UTR_5_PRIME CG4603 UPSTREAM CG4603 & 1 other	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5420547	3L_5420547_SNP [dm3] 3L_5427447_SNP [dm6]	C	G	1.298e^-4	0.346	INTRON CG34391
3L	5445268	3L_5445268_SNP [dm3] 3L_5452168_SNP [dm6]	T	C	1.298e^-4	0.346	INTERGENIC
3L	5445642	3L_5445642_SNP [dm3] 3L_5452542_SNP [dm6]	C	T	1.298e^-4	0.346	INTERGENIC
3L	5616174	3L_5616174_SNP [dm3] 3L_5623074_SNP [dm6]	A	T	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	5868274	3L_5868274_SNP [dm3] 3L_5875174_SNP [dm6]	A	T	1.298e^-4	0.346	NON_SYNONYMOUS_CODING CG18586
3L	5880014	3L_5880014_SNP [dm3] 3L_5886914_SNP [dm6]	T	C	1.298e^-4	0.346	INTERGENIC
3L	5982767	3L_5982767_SNP [dm3] 3L_5989667_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC
3L	6506013	3L_6506013_SNP [dm3] 3L_6512913_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON sfl
3L	6556675	3L_6556675_SNP [dm3] 3L_6563575_SNP [dm6]	T	C	1.298e^-4	0.346	SYNONYMOUS_CODING jv INTRON CG18769	TF binding site mE1_TFBS_cad
3L	7184461	3L_7184461_SNP [dm3] 3L_7191361_SNP [dm6]	C	G	1.298e^-4	0.346	INTERGENIC
3L	7315455	3L_7315455_SNP [dm3] 3L_7322355_SNP [dm6]	G	T	1.298e^-4	0.346	SYNONYMOUS_CODING RhoGEF4	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3L	7315520	3L_7315520_SNP [dm3] 3L_7322420_SNP [dm6]	T	G	1.298e^-4	0.346	NON_SYNONYMOUS_CODING RhoGEF4	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3L	7742006	3L_7742006_DEL [dm3] 3L_7748906_DEL [dm6]	TC	T	1.298e^-4	0.346	UTR_3_PRIME CG13685 INTRON CG32373
3L	7878484	3L_7878484_SNP [dm3] 3L_7885384_SNP [dm6]	G	T	1.298e^-4	0.346	INTRON CG32365
3L	7878497	3L_7878497_SNP [dm3] 3L_7885397_SNP [dm6]	T	C	1.298e^-4	0.346	INTRON CG32365
3L	8154655	3L_8154655_SNP [dm3] 3L_8161555_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON CG13675
3L	8845131	3L_8845131_SNP [dm3] 3L_8852031_SNP [dm6]	T	C	1.298e^-4	0.346	INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9078643	3L_9078643_SNP [dm3] 3L_9085543_SNP [dm6]	A	G	1.298e^-4	0.346	SYNONYMOUS_CODING Tequila INTRON Tequila
3L	9290752	3L_9290752_SNP [dm3] 3L_9297652_SNP [dm6]	C	T	1.298e^-4	0.346	INTERGENIC
3L	9489608	3L_9489608_SNP [dm3] 3L_9496508_SNP [dm6]	C	T	1.298e^-4	0.346	SYNONYMOUS_CODING path	TF binding site mE1_TFBS_sens
3R	10701359	3R_10701359_SNP [dm3] 3R_14875637_SNP [dm6]	T	A	1.298e^-4	0.346	UPSTREAM btsz INTERGENIC	TF binding site mE1_TFBS_Trl
3R	16010884	3R_16010884_SNP [dm3] 3R_20185162_SNP [dm6]	T	C	1.298e^-4	0.346	INTERGENIC
3R	16010898	3R_16010898_SNP [dm3] 3R_20185176_SNP [dm6]	T	G	1.298e^-4	0.346	INTERGENIC
3R	16010912	3R_16010912_SNP [dm3] 3R_20185190_SNP [dm6]	C	A	1.298e^-4	0.346	INTERGENIC
3R	16010919	3R_16010919_SNP [dm3] 3R_20185197_SNP [dm6]	T	C	1.298e^-4	0.346	INTERGENIC
3R	16010930	3R_16010930_SNP [dm3] 3R_20185208_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC
3R	16010970	3R_16010970_SNP [dm3] 3R_20185248_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC
3R	16010972	3R_16010972_DEL [dm3] 3R_20185250_DEL [dm6]	GTACCTATTCATAACCGA...	G	1.298e^-4	0.346	INTERGENIC
3R	21049872	3R_21049872_SNP [dm3] 3R_25224150_SNP [dm6]	G	A	1.298e^-4	0.346	DOWNSTREAM Cad96Cb & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	21525207	3R_21525207_SNP [dm3] 3R_25699485_SNP [dm6]	G	C	1.298e^-4	0.346	UTR_3_PRIME LpR2
3R	23496693	3R_23496693_SNP [dm3] 3R_27670971_SNP [dm6]	C	A	1.298e^-4	0.346	INTRON unc80
3R	23496694	3R_23496694_SNP [dm3] 3R_27670972_SNP [dm6]	A	T	1.298e^-4	0.346	INTRON unc80
3R	24404493	3R_24404493_SNP [dm3] 3R_28578771_SNP [dm6]	T	C	1.298e^-4	0.346	INTERGENIC	regulatory region REDfly_CRMs
3R	25087659	3R_25087659_SNP [dm3] 3R_29261937_SNP [dm6]	T	G	1.298e^-4	0.346	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	25087828	3R_25087828_SNP [dm3] 3R_29262106_SNP [dm6]	T	C	1.298e^-4	0.346	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25087832	3R_25087832_SNP [dm3] 3R_29262110_SNP [dm6]	C	A	1.298e^-4	0.346	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25087870	3R_25087870_SNP [dm3] 3R_29262148_SNP [dm6]	G	C	1.298e^-4	0.346	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25958101	3R_25958101_SNP [dm3] 3R_30132379_SNP [dm6]	A	G	1.298e^-4	0.346	UTR_5_PRIME CG31029 DOWNSTREAM Tpi
3R	6440905	3R_6440905_SNP [dm3] 3R_10615183_SNP [dm6]	C	T	1.298e^-4	0.346	UPSTREAM hth INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8095108	3R_8095108_SNP [dm3] 3R_12269386_SNP [dm6]	G	C	1.298e^-4	0.346	INTRON svp EXON CR44039
3R	8098733	3R_8098733_SNP [dm3] 3R_12273011_SNP [dm6]	A	C	1.298e^-4	0.346	UPSTREAM Sfp87B INTRON svp
3R	8098876	3R_8098876_SNP [dm3] 3R_12273154_SNP [dm6]	T	C	1.298e^-4	0.346	UTR_5_PRIME Sfp87B INTRON svp
3R	8099021	3R_8099021_SNP [dm3] 3R_12273299_SNP [dm6]	C	T	1.298e^-4	0.346	SYNONYMOUS_CODING Sfp87B INTRON svp
3R	8099276	3R_8099276_SNP [dm3] 3R_12273554_SNP [dm6]	A	T	1.298e^-4	0.346	DOWNSTREAM Sfp87B INTRON svp
3R	8100147	3R_8100147_SNP [dm3] 3R_12274425_SNP [dm6]	C	A	1.298e^-4	0.346	DOWNSTREAM Sfp87B INTRON svp
3R	8100160	3R_8100160_SNP [dm3] 3R_12274438_SNP [dm6]	C	T	1.298e^-4	0.346	DOWNSTREAM Sfp87B INTRON svp
3R	8369031	3R_8369031_SNP [dm3] 3R_12543309_SNP [dm6]	G	T	1.298e^-4	0.346	INTRON Octbeta3R
3R	8590182	3R_8590182_SNP [dm3] 3R_12764460_SNP [dm6]	A	C	1.298e^-4	0.346	INTRON beat-Vc
3R	8862121	3R_8862121_SNP [dm3] 3R_13036399_SNP [dm6]	T	A	1.298e^-4	0.346	INTRON ry	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10219437	X_10219437_SNP [dm3] X_10325404_SNP [dm6]	A	T	1.298e^-4	0.346	INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
X	10482910	X_10482910_SNP [dm3] X_10588877_SNP [dm6]	T	G	1.298e^-4	0.346	UPSTREAM Rab9D INTERGENIC
X	10718873	X_10718873_SNP [dm3] X_10824840_SNP [dm6]	T	A	1.298e^-4	0.346	UPSTREAM Imp DOWNSTREAM CR45624 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10718895	X_10718895_SNP [dm3] X_10824862_SNP [dm6]	A	G	1.298e^-4	0.346	UPSTREAM Imp DOWNSTREAM CR45624 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10872291	X_10872291_SNP [dm3] X_10978258_SNP [dm6]	C	G	1.298e^-4	0.346	INTRON CG42339
X	10872299	X_10872299_SNP [dm3] X_10978266_SNP [dm6]	A	T	1.298e^-4	0.346	INTRON CG42339
X	11367363	X_11367363_SNP [dm3] X_11473330_SNP [dm6]	G	T	1.298e^-4	0.346	INTRON CG43155
X	11437970	X_11437970_DEL [dm3] X_11543937_DEL [dm6]	AA	A	1.298e^-4	0.346	INTRON Drak	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	11437976	X_11437976_SNP [dm3] X_11543943_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON Drak	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	12792908	X_12792908_SNP [dm3] X_12898875_SNP [dm6]	T	G	1.298e^-4	0.346	UTR_3_PRIME CG32649 UPSTREAM CG32650
X	12793050	X_12793050_SNP [dm3] X_12899017_SNP [dm6]	T	A	1.298e^-4	0.346	SYNONYMOUS_CODING CG32649 UPSTREAM CG32650	TF binding site mE1_TFBS_chinmo
X	12895996	X_12895996_SNP [dm3] X_13001963_SNP [dm6]	A	C	1.298e^-4	0.346	INTRON rad
X	12981897	X_12981897_SNP [dm3] X_13087864_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON hep	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
X	13688215	X_13688215_SNP [dm3] X_13794182_SNP [dm6]	T	C	1.298e^-4	0.346	INTRON inaE
X	14443843	X_14443843_SNP [dm3] X_14549810_SNP [dm6]	T	A	1.298e^-4	0.346	INTERGENIC
X	14443991	X_14443991_SNP [dm3] X_14549958_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC
X	16109695	X_16109695_SNP [dm3] X_16215662_SNP [dm6]	T	C	1.298e^-4	0.346	INTRON disco	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
X	16141681	X_16141681_SNP [dm3] X_16247648_SNP [dm6]	C	T	1.298e^-4	0.346	INTERGENIC
X	16141683	X_16141683_SNP [dm3] X_16247650_SNP [dm6]	C	T	1.298e^-4	0.346	INTERGENIC
X	16141698	X_16141698_SNP [dm3] X_16247665_SNP [dm6]	A	T	1.298e^-4	0.346	INTERGENIC
X	16141700	X_16141700_SNP [dm3] X_16247667_SNP [dm6]	T	G	1.298e^-4	0.346	INTERGENIC
X	16149179	X_16149179_SNP [dm3] X_16255146_SNP [dm6]	C	G	1.298e^-4	0.346	DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
X	16149184	X_16149184_SNP [dm3] X_16255151_SNP [dm6]	A	T	1.298e^-4	0.346	DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16210500	X_16210500_SNP [dm3] X_16316467_SNP [dm6]	G	T	1.298e^-4	0.346	NON_SYNONYMOUS_CODING CG13957	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	16215291	X_16215291_SNP [dm3] X_16321258_SNP [dm6]	G	T	1.298e^-4	0.346	UPSTREAM Cyp1 DOWNSTREAM CG9917 INTERGENIC
X	16244939	X_16244939_SNP [dm3] X_16350906_SNP [dm6]	C	T	1.298e^-4	0.346	SYNONYMOUS_CODING sl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16720326	X_16720326_SNP [dm3] X_16826293_SNP [dm6]	T	A	1.298e^-4	0.346	UTR_3_PRIME CG4829 DOWNSTREAM CG13004
X	16720946	X_16720946_SNP [dm3] X_16826913_SNP [dm6]	C	A	1.298e^-4	0.346	UTR_3_PRIME CG13004 DOWNSTREAM CG13004 & 1 other
X	16723664	X_16723664_SNP [dm3] X_16829631_SNP [dm6]	T	C	1.298e^-4	0.346	INTRON CG13004
X	17432775	X_17432775_SNP [dm3] X_17538742_SNP [dm6]	T	A	1.298e^-4	0.346	INTRON CG43658
X	18405945	X_18405945_SNP [dm3] X_18511912_SNP [dm6]	G	C	1.298e^-4	0.346	DOWNSTREAM CG6470 INTRON Ggt-1	TF binding site BDTNP1_TFBS_dl
X	18406441	X_18406441_SNP [dm3] X_18512408_SNP [dm6]	A	G	1.298e^-4	0.346	UTR_5_PRIME Ggt-1 UPSTREAM Ggt-1 DOWNSTREAM CG6470	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18406590	X_18406590_SNP [dm3] X_18512557_SNP [dm6]	C	T	1.298e^-4	0.346	UPSTREAM Ggt-1 DOWNSTREAM CG6470 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18870594	X_18870594_SNP [dm3] X_18976561_SNP [dm6]	A	T	1.298e^-4	0.346	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	18870619	X_18870619_SNP [dm3] X_18976586_SNP [dm6]	T	C	1.298e^-4	0.346	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	19899969	X_19899969_SNP [dm3] X_20005936_SNP [dm6]	T	C	1.298e^-4	0.346	UTR_3_PRIME Dop2R
X	19899971	X_19899971_SNP [dm3] X_20005938_SNP [dm6]	T	C	1.298e^-4	0.346	UTR_3_PRIME Dop2R
X	20515147	X_20515147_SNP [dm3] X_20644120_SNP [dm6]	C	A	1.298e^-4	0.346	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	20515205	X_20515205_SNP [dm3] X_20644178_SNP [dm6]	A	C	1.298e^-4	0.346	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	20515240	X_20515240_SNP [dm3] X_20644213_SNP [dm6]	A	T	1.298e^-4	0.346	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	20515241	X_20515241_SNP [dm3] X_20644214_SNP [dm6]	A	G	1.298e^-4	0.346	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	20515244	X_20515244_SNP [dm3] X_20644217_SNP [dm6]	T	A	1.298e^-4	0.346	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	20555863	X_20555863_SNP [dm3] X_20684836_SNP [dm6]	G	T	1.298e^-4	0.346	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20719600	X_20719600_SNP [dm3] X_20848573_SNP [dm6]	C	A	1.298e^-4	0.346	INTRON shakB
X	20720283	X_20720283_SNP [dm3] X_20849256_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON shakB
X	20720317	X_20720317_SNP [dm3] X_20849290_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON shakB
X	20720349	X_20720349_SNP [dm3] X_20849322_SNP [dm6]	T	G	1.298e^-4	0.346	INTRON shakB
X	20720603	X_20720603_SNP [dm3] X_20849576_SNP [dm6]	G	T	1.298e^-4	0.346	INTRON shakB	TF binding site mE1_TFBS_chinmo
X	20720746	X_20720746_SNP [dm3] X_20849719_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON shakB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2080051	X_2080051_SNP [dm3] X_2186018_SNP [dm6]	A	C	1.298e^-4	0.346	UPSTREAM CG17777 DOWNSTREAM CG17776 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21267208	X_21267208_SNP [dm3] X_21396181_SNP [dm6]	T	C	1.298e^-4	0.346	DOWNSTREAM lcs INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	22018553	X_22018553_SNP [dm3] X_22616717_SNP [dm6]	A	C	1.298e^-4	0.346	INTRON Cda4
X	22055528	X_22055528_SNP [dm3] X_22653692_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC	TF binding site mE1_TFBS_HSA
X	22055579	X_22055579_SNP [dm3] X_22653743_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC	TF binding site mE1_TFBS_HSA
X	2263936	X_2263936_SNP [dm3] X_2369903_SNP [dm6]	G	T	1.298e^-4	0.346	NON_SYNONYMOUS_CODING PsGEF UTR_3_PRIME PsGEF	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	2311428	X_2311428_DEL [dm3] X_2417395_DEL [dm6]	TT	G	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	2997867	X_2997867_SNP [dm3] X_3103834_SNP [dm6]	T	G	1.298e^-4	0.346	INTRON kirre
X	4530252	X_4530252_SNP [dm3] X_4636219_SNP [dm6]	G	A	1.298e^-4	0.346	UPSTREAM pon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4569282	X_4569282_SNP [dm3] X_4675249_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON rap
X	4656867	X_4656867_SNP [dm3] X_4762834_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC
X	4685359	X_4685359_SNP [dm3] X_4791326_SNP [dm6]	C	G	1.298e^-4	0.346	INTERGENIC
X	5302626	X_5302626_SNP [dm3] X_5408593_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi
X	5482639	X_5482639_SNP [dm3] X_5588606_SNP [dm6]	A	C	1.298e^-4	0.346	INTERGENIC
X	6122463	X_6122463_SNP [dm3] X_6228430_SNP [dm6]	T	C	1.298e^-4	0.346	INTRON CG14446	TF binding site mE1_TFBS_sens
X	6331684	X_6331684_SNP [dm3] X_6437651_SNP [dm6]	A	C	1.298e^-4	0.346	INTRON CG42340
X	6336233	X_6336233_SNP [dm3] X_6442200_SNP [dm6]	T	A	1.298e^-4	0.346	INTRON CG42340
X	6740072	X_6740072_SNP [dm3] X_6846039_SNP [dm6]	G	A	1.298e^-4	0.346	SYNONYMOUS_CODING CG4557	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7730108	X_7730108_SNP [dm3] X_7836075_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON CG1402	TF binding site mE1_TFBS_HSA
X	8086288	X_8086288_SNP [dm3] X_8192255_SNP [dm6]	T	A	1.298e^-4	0.346	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	8086313	X_8086313_SNP [dm3] X_8192280_SNP [dm6]	T	A	1.298e^-4	0.346	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	8086322	X_8086322_SNP [dm3] X_8192289_SNP [dm6]	A	T	1.298e^-4	0.346	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	8086584	X_8086584_SNP [dm3] X_8192551_SNP [dm6]	C	G	1.298e^-4	0.346	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	8087327	X_8087327_SNP [dm3] X_8193294_SNP [dm6]	C	T	1.298e^-4	0.346	START_GAINED sdt UTR_5_PRIME sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	8087745	X_8087745_DEL [dm3] X_8193712_DEL [dm6]	TTA	T	1.298e^-4	0.346	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	8087755	X_8087755_SNP [dm3] X_8193722_SNP [dm6]	G	A	1.298e^-4	0.346	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	8087797	X_8087797_SNP [dm3] X_8193764_SNP [dm6]	C	A	1.298e^-4	0.346	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	8087807	X_8087807_SNP [dm3] X_8193774_SNP [dm6]	C	A	1.298e^-4	0.346	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	8087971	X_8087971_SNP [dm3] X_8193938_SNP [dm6]	C	G	1.298e^-4	0.346	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	8088015	X_8088015_SNP [dm3] X_8193982_SNP [dm6]	T	C	1.298e^-4	0.346	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	8088110	X_8088110_SNP [dm3] X_8194077_SNP [dm6]	A	G	1.298e^-4	0.346	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	8088120	X_8088120_INS [dm3] X_8194087_INS [dm6]	T	TTTT	1.298e^-4	0.346	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	8088138	X_8088138_SNP [dm3] X_8194105_SNP [dm6]	A	T	1.298e^-4	0.346	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	8088143	X_8088143_SNP [dm3] X_8194110_SNP [dm6]	A	C	1.298e^-4	0.346	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	8088149	X_8088149_SNP [dm3] X_8194116_SNP [dm6]	G	C	1.298e^-4	0.346	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	8088270	X_8088270_SNP [dm3] X_8194237_SNP [dm6]	C	T	1.298e^-4	0.346	INTRON sdt	TF binding site mE1_TFBS_bab1
X	8553014	X_8553014_SNP [dm3] X_8658981_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	8553108	X_8553108_SNP [dm3] X_8659075_SNP [dm6]	A	T	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	8553120	X_8553120_SNP [dm3] X_8659087_SNP [dm6]	C	A	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	8553153	X_8553153_SNP [dm3] X_8659120_SNP [dm6]	T	A	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	8553155	X_8553155_SNP [dm3] X_8659122_SNP [dm6]	T	A	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	8553159	X_8553159_SNP [dm3] X_8659126_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	8553166	X_8553166_SNP [dm3] X_8659133_SNP [dm6]	T	A	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	8553171	X_8553171_INS [dm3] X_8659138_INS [dm6]	A	TGT	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	8553179	X_8553179_INS [dm3] X_8659146_INS [dm6]	A	ATTC	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	8553181	X_8553181_DEL [dm3] X_8659148_DEL [dm6]	ACC	A	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	8553185	X_8553185_SNP [dm3] X_8659152_SNP [dm6]	A	T	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	8566082	X_8566082_SNP [dm3] X_8672049_SNP [dm6]	C	T	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	8566091	X_8566091_SNP [dm3] X_8672058_SNP [dm6]	C	T	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	8567207	X_8567207_SNP [dm3] X_8673174_SNP [dm6]	G	A	1.298e^-4	0.346	INTERGENIC
X	8635247	X_8635247_SNP [dm3] X_8741214_SNP [dm6]	C	T	1.298e^-4	0.346	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9133044	X_9133044_SNP [dm3] X_9239011_SNP [dm6]	G	A	1.298e^-4	0.346	SYNONYMOUS_CODING mxc
X	9197561	X_9197561_SNP [dm3] X_9303528_SNP [dm6]	C	A	1.298e^-4	0.346	UTR_3_PRIME lz
2L	20126611	2L_20126611_SNP [dm3] 2L_20126611_SNP [dm6]	A	T	1.387e^-4	0.368	INTERGENIC
2R	17356690	2R_17356690_INS [dm3] 2R_21469185_INS [dm6]	G	GG	1.387e^-4	0.368	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3R	19809547	3R_19809547_SNP [dm3] 3R_23983825_SNP [dm6]	A	G	1.387e^-4	0.368	DOWNSTREAM CG31140 EXON CR31451
3R	4660280	3R_4660280_DEL [dm3] 3R_8834558_DEL [dm6]	TGCTGCTGCTGCT...	T	1.495e^-4	0.395	CODON_DELETION pyd	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	8856754	X_8856754_INS [dm3] X_8962721_INS [dm6]	C	CTGGCTGGCTGGC...	1.495e^-4	0.395	INTRON rdgA
2L	13728862	2L_13728862_SNP [dm3] 2L_13728862_SNP [dm6]	T	A	1.510e^-4	0.396	INTERGENIC
2L	14690264	2L_14690264_SNP [dm3] 2L_14690264_SNP [dm6]	C	G	1.510e^-4	0.396	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	3586418	3L_3586418_SNP [dm3] 3L_3586418_SNP [dm6]	A	C	1.510e^-4	0.396	INTRON Eip63E
3R	25402590	3R_25402590_SNP [dm3] 3R_29576868_SNP [dm6]	T	G	1.510e^-4	0.396	INTERGENIC
X	11437920	X_11437920_SNP [dm3] X_11543887_SNP [dm6]	C	A	1.510e^-4	0.396	INTRON Drak	TF binding site mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	8566064	X_8566064_SNP [dm3] X_8672031_SNP [dm6]	A	T	1.510e^-4	0.396	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	20383451	3R_20383451_SNP [dm3] 3R_24557729_SNP [dm6]	T	C	1.531e^-4	0.4	UTR_3_PRIME CG13624 DOWNSTREAM snRNA:U6:96Ab & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7048487	2L_7048487_INS [dm3] 2L_7048487_INS [dm6]	T	TTTTGGATATGGTAAT...	1.543e^-4	0.403	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16145043	2R_16145043_SNP [dm3] 2R_20257538_SNP [dm6]	T	A	1.546e^-4	0.403	UPSTREAM Hsl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9275946	3R_9275946_SNP [dm3] 3R_13450224_SNP [dm6]	C	A	1.593e^-4	0.408	UPSTREAM CG14372 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	6557147	2R_6557147_SNP [dm3] 2R_10669642_SNP [dm6]	A	T	1.622e^-4	0.408	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15402135	3L_15402135_SNP [dm3] 3L_15409035_SNP [dm6]	C	T	1.622e^-4	0.408	DOWNSTREAM CG33259 INTERGENIC
X	3713857	X_3713857_SNP [dm3] X_3819824_SNP [dm6]	T	C	1.622e^-4	0.408	DOWNSTREAM tRNA:CR32785 INTRON ec
2L	15953810	2L_15953810_SNP [dm3] 2L_15953810_SNP [dm6]	C	T	1.667e^-4	0.408	INTRON beat-Ib
2L	21719040	2L_21719040_SNP [dm3] 2L_21719040_SNP [dm6]	A	C	1.667e^-4	0.408	INTRON CG31619
2L	8956259	2L_8956259_SNP [dm3] 2L_8956259_SNP [dm6]	T	G	1.667e^-4	0.408	UPSTREAM CG31886 INTRON CG31886
2R	12167221	2R_12167221_SNP [dm3] 2R_16279716_SNP [dm6]	C	A	1.667e^-4	0.408	UPSTREAM CG15704 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12642404	2R_12642404_SNP [dm3] 2R_16754899_SNP [dm6]	T	A	1.667e^-4	0.408	UTR_3_PRIME CG34189 UPSTREAM CG5267 INTRON unc-104
2R	12655366	2R_12655366_SNP [dm3] 2R_16767861_SNP [dm6]	C	G	1.667e^-4	0.408	SYNONYMOUS_CODING CG5348 UTR_3_PRIME CG5348 INTRON unc-104
2R	14366886	2R_14366886_SNP [dm3] 2R_18479381_SNP [dm6]	G	C	1.667e^-4	0.408	INTRON CG30116
2R	14366920	2R_14366920_SNP [dm3] 2R_18479415_SNP [dm6]	A	G	1.667e^-4	0.408	INTRON CG30116
2R	14366950	2R_14366950_SNP [dm3] 2R_18479445_SNP [dm6]	T	A	1.667e^-4	0.408	INTRON CG30116
2R	14366956	2R_14366956_SNP [dm3] 2R_18479451_SNP [dm6]	A	G	1.667e^-4	0.408	INTRON CG30116
2R	14366957	2R_14366957_SNP [dm3] 2R_18479452_SNP [dm6]	A	C	1.667e^-4	0.408	INTRON CG30116
2R	14366959	2R_14366959_DEL [dm3] 2R_18479454_DEL [dm6]	TTCTT	AC	1.667e^-4	0.408	INTRON CG30116
2R	14367076	2R_14367076_SNP [dm3] 2R_18479571_SNP [dm6]	C	T	1.667e^-4	0.408	INTRON CG30116
2R	16518966	2R_16518966_SNP [dm3] 2R_20631461_SNP [dm6]	A	C	1.667e^-4	0.408	INTRON Rcd6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18988139	2R_18988139_SNP [dm3] 2R_23100616_SNP [dm6]	A	G	1.667e^-4	0.408	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	231793	2R_231793_SNP [dm3] 2R_4344288_SNP [dm6]	T	A	1.667e^-4	0.408	INTRON Gprk1
2R	6026456	2R_6026456_SNP [dm3] 2R_10138951_SNP [dm6]	G	C	1.667e^-4	0.408	SYNONYMOUS_CODING CG12917 UPSTREAM Or46a DOWNSTREAM CR43467	TF binding site BDTNP1_TFBS_twi
3L	15443701	3L_15443701_SNP [dm3] 3L_15450601_SNP [dm6]	G	A	1.667e^-4	0.408	INTERGENIC
3L	15443725	3L_15443725_SNP [dm3] 3L_15450625_SNP [dm6]	A	T	1.667e^-4	0.408	INTERGENIC
3L	21191452	3L_21191452_SNP [dm3] 3L_21198352_SNP [dm6]	C	G	1.667e^-4	0.408	UTR_3_PRIME CG33056 UPSTREAM CG33054 DOWNSTREAM CG34261 INTRON CG33054	TF binding site BDTNP1_TFBS_twi
3L	2690388	3L_2690388_SNP [dm3] 3L_2690388_SNP [dm6]	T	C	1.667e^-4	0.408	INTRON Fife
3R	24627546	3R_24627546_SNP [dm3] 3R_28801824_SNP [dm6]	T	A	1.667e^-4	0.408	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16141740	X_16141740_INS [dm3] X_16247707_INS [dm6]	T	TA	1.667e^-4	0.408	INTERGENIC
X	16141742	X_16141742_SNP [dm3] X_16247709_SNP [dm6]	C	T	1.667e^-4	0.408	INTERGENIC
X	16141744	X_16141744_INS [dm3] X_16247711_INS [dm6]	A	AGT	1.667e^-4	0.408	INTERGENIC
X	16141749	X_16141749_SNP [dm3] X_16247716_SNP [dm6]	A	T	1.667e^-4	0.408	INTERGENIC
X	16141752	X_16141752_INS [dm3] X_16247719_INS [dm6]	T	AC	1.667e^-4	0.408	INTERGENIC
X	16690892	X_16690892_SNP [dm3] X_16796859_SNP [dm6]	C	A	1.667e^-4	0.408	DOWNSTREAM CG9132 & 1 other INTERGENIC
X	3973753	X_3973753_SNP [dm3] X_4079720_SNP [dm6]	A	T	1.667e^-4	0.408	INTRON CG43689	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	4656387	X_4656387_SNP [dm3] X_4762354_SNP [dm6]	T	G	1.667e^-4	0.408	INTERGENIC
X	4656413	X_4656413_SNP [dm3] X_4762380_SNP [dm6]	C	G	1.667e^-4	0.408	INTERGENIC
X	4656458	X_4656458_SNP [dm3] X_4762425_SNP [dm6]	T	C	1.667e^-4	0.408	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	17313306	2L_17313306_SNP [dm3] 2L_17313306_SNP [dm6]	G	T	1.668e^-4	0.408	INTERGENIC
2R	12403535	2R_12403535_SNP [dm3] 2R_16516030_SNP [dm6]	T	A	1.668e^-4	0.408	UPSTREAM Sema-2a INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
2R	7727372	2R_7727372_SNP [dm3] 2R_11839867_SNP [dm6]	T	A	1.668e^-4	0.408	UPSTREAM Sobp INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10945654	3L_10945654_SNP [dm3] 3L_10952554_SNP [dm6]	G	T	1.668e^-4	0.408	INTERGENIC
3L	5567930	3L_5567930_SNP [dm3] 3L_5574830_SNP [dm6]	T	A	1.668e^-4	0.408	INTRON Msr-110
3R	16468822	3R_16468822_SNP [dm3] 3R_20643100_SNP [dm6]	C	G	1.952e^-4	0.477	SYNONYMOUS_CODING Lrrk
2R	13701001	2R_13701001_SNP [dm3] 2R_17813496_SNP [dm6]	C	G	1.967e^-4	0.478	UPSTREAM grh INTRON grh	TF binding site BDTNP1_TFBS_dl
2R	16037577	2R_16037577_SNP [dm3] 2R_20150072_SNP [dm6]	T	C	1.967e^-4	0.478	UPSTREAM CR45229 INTERGENIC	TF binding site mE1_TFBS_cad
3L	12792949	3L_12792949_SNP [dm3] 3L_12799849_SNP [dm6]	T	G	1.967e^-4	0.478	INTRON Atg1
X	14670705	X_14670705_SNP [dm3] X_14776672_SNP [dm6]	T	G	2.242e^-4	0.544	UPSTREAM CG5347 DOWNSTREAM CG5334 INTERGENIC
X	5153615	X_5153615_INS [dm3] X_5259582_INS [dm6]	C	CAATCTCTCCATCTCTC...	2.242e^-4	0.544	INTERGENIC
3L	11749586	3L_11749586_SNP [dm3] 3L_11756486_SNP [dm6]	T	C	2.325e^-4	0.553	INTRON CG6024
3L	11749600	3L_11749600_SNP [dm3] 3L_11756500_SNP [dm6]	A	T	2.325e^-4	0.553	INTRON CG6024
3L	11749637	3L_11749637_SNP [dm3] 3L_11756537_SNP [dm6]	C	A	2.325e^-4	0.553	INTRON CG6024
2L	1241275	2L_1241275_SNP [dm3] 2L_1241275_SNP [dm6]	C	T	2.350e^-4	0.553	SYNONYMOUS_CODING CG5397
2L	1364077	2L_1364077_SNP [dm3] 2L_1364077_SNP [dm6]	T	A	2.350e^-4	0.553	INTERGENIC
2L	1720254	2L_1720254_DEL [dm3] 2L_1720254_DEL [dm6]	CCGGGCACAGAACGGAGCAC...	C	2.350e^-4	0.553	INTRON Rim2
2L	18664834	2L_18664834_SNP [dm3] 2L_18664834_SNP [dm6]	T	A	2.350e^-4	0.553	UPSTREAM CR42490 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	20034261	2L_20034261_SNP [dm3] 2L_20034261_SNP [dm6]	A	C	2.350e^-4	0.553	INTRON sNPF
2L	4788875	2L_4788875_SNP [dm3] 2L_4788875_SNP [dm6]	C	A	2.350e^-4	0.553	INTRON CG15630
2L	8990147	2L_8990147_SNP [dm3] 2L_8990147_SNP [dm6]	G	A	2.350e^-4	0.553	UPSTREAM rost INTERGENIC
2L	9350383	2L_9350383_SNP [dm3] 2L_9350383_SNP [dm6]	T	A	2.350e^-4	0.553	UPSTREAM CG13110 DOWNSTREAM CG43350 INTERGENIC
2R	10644697	2R_10644697_SNP [dm3] 2R_14757192_SNP [dm6]	A	C	2.350e^-4	0.553	UPSTREAM CG10151 DOWNSTREAM CG12857 & 1 other INTRON Trs31	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	117314	2R_117314_SNP [dm3] 2R_4229809_SNP [dm6]	G	A	2.350e^-4	0.553	INTERGENIC
2R	15009230	2R_15009230_SNP [dm3] 2R_19121725_SNP [dm6]	A	T	2.350e^-4	0.553	UTR_3_PRIME 5-HT1A DOWNSTREAM CG15117	TF binding site mE1_TFBS_kn
3L	9848819	3L_9848819_SNP [dm3] 3L_9855719_SNP [dm6]	C	T	2.350e^-4	0.553	UPSTREAM RasGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
X	12342942	X_12342942_SNP [dm3] X_12448909_SNP [dm6]	C	A	2.350e^-4	0.553	INTRON Pkcdelta
X	18233478	X_18233478_SNP [dm3] X_18339445_SNP [dm6]	A	T	2.350e^-4	0.553	INTRON CG6123
X	18439388	X_18439388_SNP [dm3] X_18545355_SNP [dm6]	C	G	2.350e^-4	0.553	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3416367	X_3416367_SNP [dm3] X_3522334_SNP [dm6]	A	C	2.350e^-4	0.553	INTRON CR44999 & 1 other
X	8202149	X_8202149_SNP [dm3] X_8308116_SNP [dm6]	A	T	2.350e^-4	0.553	INTRON nAChRalpha3
3L	15705877	3L_15705877_SNP [dm3] 3L_15712777_SNP [dm6]	T	G	2.434e^-4	0.572	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Stat92E
3R	23155411	3R_23155411_INS [dm3] 3R_27329689_INS [dm6]	T	TT	2.663e^-4	0.625	DOWNSTREAM CG3330 INTERGENIC
X	16100269	X_16100269_INS [dm3] X_16206236_INS [dm6]	C	CAT	2.819e^-4	0.659	INTERGENIC
3L	2083767	3L_2083767_SNP [dm3] 3L_2083767_SNP [dm6]	G	A	3.107e^-4	0.659	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA
3L	15509181	3L_15509181_SNP [dm3] 3L_15516081_SNP [dm6]	G	A	3.134e^-4	0.659	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	15727996	2L_15727996_DEL [dm3] 2L_15727996_DEL [dm6]	TT	T	3.214e^-4	0.659	UTR_3_PRIME CycE
2L	19325371	2L_19325371_DEL [dm3] 2L_19325371_DEL [dm6]	CCA	GG	3.214e^-4	0.659	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	10177290	2R_10177290_SNP [dm3] 2R_14289785_SNP [dm6]	A	T	3.214e^-4	0.659	INTRON Ih	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10197544	2R_10197544_SNP [dm3] 2R_14310039_SNP [dm6]	G	T	3.214e^-4	0.659	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
2R	10398337	2R_10398337_SNP [dm3] 2R_14510832_SNP [dm6]	T	C	3.214e^-4	0.659	DOWNSTREAM Asx INTRON Asx
2R	21099071	2R_21099071_INS [dm3] 2R_25211548_INS [dm6]	A	AAA	3.214e^-4	0.659	INTRON CG9380	regulatory region FlyBase TF binding site BDTNP1_TFBS_hb
3L	10854727	3L_10854727_INS [dm3] 3L_10861627_INS [dm6]	A	ACATA	3.214e^-4	0.659	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11454515	3L_11454515_SNP [dm3] 3L_11461415_SNP [dm6]	C	T	3.214e^-4	0.659	INTERGENIC
3L	14047580	3L_14047580_SNP [dm3] 3L_14054480_SNP [dm6]	C	T	3.214e^-4	0.659	DOWNSTREAM CG43986 INTRON CG32138
3L	20673738	3L_20673738_SNP [dm3] 3L_20680638_SNP [dm6]	C	T	3.214e^-4	0.659	INTERGENIC
3L	5854763	3L_5854763_SNP [dm3] 3L_5861663_SNP [dm6]	G	A	3.214e^-4	0.659	INTERGENIC
3L	5854779	3L_5854779_DEL [dm3] 3L_5861679_DEL [dm6]	TG	T	3.214e^-4	0.659	INTERGENIC
3R	10701804	3R_10701804_INS [dm3] 3R_14876082_INS [dm6]	G	AGA	3.214e^-4	0.659	UPSTREAM btsz INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	10701809	3R_10701809_SNP [dm3] 3R_14876087_SNP [dm6]	T	C	3.214e^-4	0.659	UPSTREAM btsz INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	13003339	3R_13003339_SNP [dm3] 3R_17177617_SNP [dm6]	A	C	3.214e^-4	0.659	INTRON Mur89F
3R	18780993	3R_18780993_SNP [dm3] 3R_22955271_SNP [dm6]	T	C	3.214e^-4	0.659	INTRON klg
3R	19062638	3R_19062638_SNP [dm3] 3R_23236916_SNP [dm6]	C	T	3.214e^-4	0.659	INTRON CG4467
3R	19062656	3R_19062656_SNP [dm3] 3R_23236934_SNP [dm6]	T	G	3.214e^-4	0.659	INTRON CG4467
3R	19177350	3R_19177350_SNP [dm3] 3R_23351628_SNP [dm6]	C	T	3.214e^-4	0.659	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad
3R	19177404	3R_19177404_SNP [dm3] 3R_23351682_SNP [dm6]	G	A	3.214e^-4	0.659	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad
3R	19581365	3R_19581365_SNP [dm3] 3R_23755643_SNP [dm6]	T	C	3.214e^-4	0.659	SYNONYMOUS_CODING Hrd3
3R	23399569	3R_23399569_INS [dm3] 3R_27573847_INS [dm6]	G	GA	3.214e^-4	0.659	INTRON wdb
3R	23399574	3R_23399574_DEL [dm3] 3R_27573852_DEL [dm6]	TA	T	3.214e^-4	0.659	INTRON wdb
3R	24627840	3R_24627840_SNP [dm3] 3R_28802118_SNP [dm6]	G	A	3.214e^-4	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25087734	3R_25087734_SNP [dm3] 3R_29262012_SNP [dm6]	G	A	3.214e^-4	0.659	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25161903	3R_25161903_SNP [dm3] 3R_29336181_SNP [dm6]	C	A	3.214e^-4	0.659	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	26550926	3R_26550926_SNP [dm3] 3R_30725204_SNP [dm6]	T	G	3.214e^-4	0.659	UPSTREAM CG1340 INTERGENIC
3R	6441076	3R_6441076_SNP [dm3] 3R_10615354_SNP [dm6]	A	G	3.214e^-4	0.659	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
3R	7976040	3R_7976040_SNP [dm3] 3R_12150318_SNP [dm6]	A	G	3.214e^-4	0.659	INTRON dpr15
3R	8081708	3R_8081708_SNP [dm3] 3R_12255986_SNP [dm6]	A	C	3.214e^-4	0.659	SYNONYMOUS_CODING CG3942	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8081723	3R_8081723_SNP [dm3] 3R_12256001_SNP [dm6]	A	G	3.214e^-4	0.659	SYNONYMOUS_CODING CG3942	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8151411	3R_8151411_SNP [dm3] 3R_12325689_SNP [dm6]	A	G	3.214e^-4	0.659	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	8240175	3R_8240175_SNP [dm3] 3R_12414453_SNP [dm6]	T	C	3.214e^-4	0.659	NON_SYNONYMOUS_CODING pps UPSTREAM Dip-C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	8570405	3R_8570405_SNP [dm3] 3R_12744683_SNP [dm6]	C	T	3.214e^-4	0.659	INTERGENIC
3R	8570477	3R_8570477_INS [dm3] 3R_12744755_INS [dm6]	T	TTGTAT	3.214e^-4	0.659	INTERGENIC
3R	8570481	3R_8570481_SNP [dm3] 3R_12744759_SNP [dm6]	G	A	3.214e^-4	0.659	INTERGENIC
3R	9586880	3R_9586880_SNP [dm3] 3R_13761158_SNP [dm6]	G	C	3.214e^-4	0.659	DOWNSTREAM CG34383 INTRON CG34383
3R	9956997	3R_9956997_SNP [dm3] 3R_14131275_SNP [dm6]	A	G	3.214e^-4	0.659	INTRON CG14356	TF binding site mE1_TFBS_cad
X	20515220	X_20515220_INS [dm3] X_20644193_INS [dm6]	A	AATATAT	3.214e^-4	0.659	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	4530103	X_4530103_SNP [dm3] X_4636070_SNP [dm6]	T	C	3.214e^-4	0.659	UPSTREAM pon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10541457	2L_10541457_SNP [dm3] 2L_10541457_SNP [dm6]	C	A	3.283e^-4	0.659	INTERGENIC
2L	10586634	2L_10586634_INS [dm3] 2L_10586634_INS [dm6]	A	AA	3.283e^-4	0.659	INTRON Trim9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11082582	2L_11082582_SNP [dm3] 2L_11082582_SNP [dm6]	A	G	3.283e^-4	0.659	DOWNSTREAM AstCC INTERGENIC
2L	12388903	2L_12388903_DEL [dm3] 2L_12388903_DEL [dm6]	TGACAAA	T	3.283e^-4	0.659	INTRON bru-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12388921	2L_12388921_SNP [dm3] 2L_12388921_SNP [dm6]	A	T	3.283e^-4	0.659	INTRON bru-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12388937	2L_12388937_SNP [dm3] 2L_12388937_SNP [dm6]	T	A	3.283e^-4	0.659	INTRON bru-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12388944	2L_12388944_SNP [dm3] 2L_12388944_SNP [dm6]	T	C	3.283e^-4	0.659	INTRON bru-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12388966	2L_12388966_SNP [dm3] 2L_12388966_SNP [dm6]	C	T	3.283e^-4	0.659	INTRON bru-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12781230	2L_12781230_SNP [dm3] 2L_12781230_SNP [dm6]	A	G	3.283e^-4	0.659	INTERGENIC
2L	12781333	2L_12781333_SNP [dm3] 2L_12781333_SNP [dm6]	A	C	3.283e^-4	0.659	INTERGENIC
2L	12781345	2L_12781345_SNP [dm3] 2L_12781345_SNP [dm6]	C	G	3.283e^-4	0.659	INTERGENIC
2L	12781364	2L_12781364_SNP [dm3] 2L_12781364_SNP [dm6]	G	A	3.283e^-4	0.659	INTERGENIC
2L	13248814	2L_13248814_SNP [dm3] 2L_13248814_SNP [dm6]	T	A	3.283e^-4	0.659	INTRON CG16820
2L	13248820	2L_13248820_INS [dm3] 2L_13248820_INS [dm6]	A	AA	3.283e^-4	0.659	INTRON CG16820
2L	13248827	2L_13248827_SNP [dm3] 2L_13248827_SNP [dm6]	G	A	3.283e^-4	0.659	INTRON CG16820
2L	13248830	2L_13248830_SNP [dm3] 2L_13248830_SNP [dm6]	T	C	3.283e^-4	0.659	INTRON CG16820
2L	13248831	2L_13248831_SNP [dm3] 2L_13248831_SNP [dm6]	G	A	3.283e^-4	0.659	INTRON CG16820
2L	13248845	2L_13248845_SNP [dm3] 2L_13248845_SNP [dm6]	C	T	3.283e^-4	0.659	INTRON CG16820
2L	13250645	2L_13250645_SNP [dm3] 2L_13250645_SNP [dm6]	A	C	3.283e^-4	0.659	UPSTREAM CG31728 DOWNSTREAM CG16820 INTERGENIC
2L	13588813	2L_13588813_SNP [dm3] 2L_13588813_SNP [dm6]	G	A	3.283e^-4	0.659	INTRON kuz
2L	13710202	2L_13710202_SNP [dm3] 2L_13710202_SNP [dm6]	G	A	3.283e^-4	0.659	SYNONYMOUS_CODING CG7311 UTR_3_PRIME CG7311 INTRON CG31814	TF binding site mE1_TFBS_HSA
2L	14718521	2L_14718521_SNP [dm3] 2L_14718521_SNP [dm6]	A	C	3.283e^-4	0.659	INTERGENIC
2L	16368460	2L_16368460_SNP [dm3] 2L_16368460_SNP [dm6]	A	T	3.283e^-4	0.659	INTERGENIC
2L	18916977	2L_18916977_SNP [dm3] 2L_18916977_SNP [dm6]	T	A	3.283e^-4	0.659	UTR_3_PRIME ssp3
2L	3227954	2L_3227954_SNP [dm3] 2L_3227954_SNP [dm6]	C	T	3.283e^-4	0.659	INTERGENIC
2L	3322572	2L_3322572_SNP [dm3] 2L_3322572_SNP [dm6]	C	G	3.283e^-4	0.659	INTRON CG8837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5071988	2L_5071988_SNP [dm3] 2L_5071988_SNP [dm6]	T	C	3.283e^-4	0.659	UTR_3_PRIME RpL37A UPSTREAM CR45305 DOWNSTREAM pgant5 & 1 other
2L	5859528	2L_5859528_SNP [dm3] 2L_5859528_SNP [dm6]	G	A	3.283e^-4	0.659	DOWNSTREAM rau INTERGENIC
2L	7186801	2L_7186801_SNP [dm3] 2L_7186801_SNP [dm6]	G	A	3.283e^-4	0.659	INTRON CG4496	TF binding site mE1_TFBS_HSA
2L	7186805	2L_7186805_SNP [dm3] 2L_7186805_SNP [dm6]	T	C	3.283e^-4	0.659	INTRON CG4496	TF binding site mE1_TFBS_HSA
2L	7186806	2L_7186806_SNP [dm3] 2L_7186806_SNP [dm6]	T	G	3.283e^-4	0.659	INTRON CG4496	TF binding site mE1_TFBS_HSA
2L	8076880	2L_8076880_SNP [dm3] 2L_8076880_SNP [dm6]	G	C	3.283e^-4	0.659	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_sens
2R	10398727	2R_10398727_SNP [dm3] 2R_14511222_SNP [dm6]	A	G	3.283e^-4	0.659	SYNONYMOUS_CODING Asx UTR_3_PRIME Asx DOWNSTREAM Asx
2R	11799040	2R_11799040_SNP [dm3] 2R_15911535_SNP [dm6]	C	T	3.283e^-4	0.659	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12179791	2R_12179791_SNP [dm3] 2R_16292286_SNP [dm6]	T	C	3.283e^-4	0.659	UTR_3_PRIME CG7747 UPSTREAM CR43730 DOWNSTREAM JhI-26 & 2 others
2R	13150543	2R_13150543_SNP [dm3] 2R_17263038_SNP [dm6]	G	C	3.283e^-4	0.659	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	14081038	2R_14081038_SNP [dm3] 2R_18193533_SNP [dm6]	C	G	3.283e^-4	0.659	UPSTREAM CG33958 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	15875347	2R_15875347_SNP [dm3] 2R_19987842_SNP [dm6]	A	G	3.283e^-4	0.659	INTERGENIC
2R	16420300	2R_16420300_SNP [dm3] 2R_20532795_SNP [dm6]	C	T	3.283e^-4	0.659	UPSTREAM CG30154 EXON CR44651
2R	18884857	2R_18884857_INS [dm3] 2R_22997334_INS [dm6]	T	TC	3.283e^-4	0.659	INTRON twi & 1 other
2R	7266429	2R_7266429_SNP [dm3] 2R_11378924_SNP [dm6]	C	T	3.283e^-4	0.659	INTRON Tsp47F
2R	8485689	2R_8485689_SNP [dm3] 2R_12598184_SNP [dm6]	C	G	3.283e^-4	0.659	INTRON Amph
2R	9099530	2R_9099530_SNP [dm3] 2R_13212025_SNP [dm6]	C	T	3.283e^-4	0.659	UPSTREAM CG30058 & 1 other DOWNSTREAM AQP INTRON CG30058 & 2 others
2R	9158696	2R_9158696_SNP [dm3] 2R_13271191_SNP [dm6]	G	T	3.283e^-4	0.659	INTRON Dh31-R
2R	9900941	2R_9900941_SNP [dm3] 2R_14013436_SNP [dm6]	C	T	3.283e^-4	0.659	INTRON mam
3L	10012860	3L_10012860_SNP [dm3] 3L_10019760_SNP [dm6]	C	A	3.283e^-4	0.659	INTRON dpr6
3L	10631899	3L_10631899_SNP [dm3] 3L_10638799_SNP [dm6]	A	G	3.283e^-4	0.659	UPSTREAM E_z_ & 1 other INTRON CG8009
3L	11176076	3L_11176076_SNP [dm3] 3L_11182976_SNP [dm6]	G	A	3.283e^-4	0.659	INTRON GlcAT-P
3L	1263696	3L_1263696_SNP [dm3] 3L_1263696_SNP [dm6]	G	A	3.283e^-4	0.659	INTRON CG9134
3L	15139710	3L_15139710_SNP [dm3] 3L_15146610_SNP [dm6]	C	T	3.283e^-4	0.659	UPSTREAM FucTA DOWNSTREAM Pex3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18840043	3L_18840043_SNP [dm3] 3L_18846943_SNP [dm6]	T	C	3.283e^-4	0.659	UPSTREAM Indy INTERGENIC
3L	21558474	3L_21558474_SNP [dm3] 3L_21565374_SNP [dm6]	A	G	3.283e^-4	0.659	UPSTREAM CG7634 INTERGENIC
3L	22744066	3L_22744066_SNP [dm3] 3L_22750966_SNP [dm6]	C	A	3.283e^-4	0.659	INTRON SPoCk	transposable element FlyBase
3L	3550127	3L_3550127_SNP [dm3] 3L_3550127_SNP [dm6]	G	T	3.283e^-4	0.659	INTRON Eip63E
3L	3789100	3L_3789100_DEL [dm3] 3L_3789100_DEL [dm6]	AC	A	3.283e^-4	0.659	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	4769730	3L_4769730_SNP [dm3] 3L_4769730_SNP [dm6]	A	C	3.283e^-4	0.659	INTRON RhoGEF64C
3L	5203030	3L_5203030_INS [dm3] 3L_5209930_INS [dm6]	T	TTGATATTT	3.283e^-4	0.659	INTRON shep
3L	5973154	3L_5973154_SNP [dm3] 3L_5980054_SNP [dm6]	C	G	3.283e^-4	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7077104	3L_7077104_SNP [dm3] 3L_7084004_SNP [dm6]	C	T	3.283e^-4	0.659	INTERGENIC
3L	9745027	3L_9745027_SNP [dm3] 3L_9751927_SNP [dm6]	A	T	3.283e^-4	0.659	UPSTREAM CG42268 INTRON CG42268	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	10548044	X_10548044_SNP [dm3] X_10654011_SNP [dm6]	G	C	3.283e^-4	0.659	INTRON X11Lbeta
X	11176760	X_11176760_SNP [dm3] X_11282727_SNP [dm6]	C	T	3.283e^-4	0.659	INTRON CG44422
X	11176762	X_11176762_SNP [dm3] X_11282729_SNP [dm6]	C	A	3.283e^-4	0.659	INTRON CG44422
X	11176774	X_11176774_SNP [dm3] X_11282741_SNP [dm6]	T	A	3.283e^-4	0.659	INTRON CG44422
X	11176781	X_11176781_SNP [dm3] X_11282748_SNP [dm6]	T	C	3.283e^-4	0.659	INTRON CG44422
X	12507145	X_12507145_SNP [dm3] X_12613112_SNP [dm6]	G	C	3.283e^-4	0.659	NON_SYNONYMOUS_CODING CG2543 SPLICE_SITE_REGION CG2543 DOWNSTREAM CR45621 EXON CR45621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	18929792	X_18929792_SNP [dm3] X_19035759_SNP [dm6]	T	A	3.283e^-4	0.659	INTERGENIC
X	20720178	X_20720178_SNP [dm3] X_20849151_SNP [dm6]	T	A	3.283e^-4	0.659	INTRON shakB
X	22045918	X_22045918_SNP [dm3] X_22644082_SNP [dm6]	T	A	3.283e^-4	0.659	INTERGENIC
X	22055577	X_22055577_SNP [dm3] X_22653741_SNP [dm6]	A	G	3.283e^-4	0.659	INTERGENIC	TF binding site mE1_TFBS_HSA
X	2280022	X_2280022_SNP [dm3] X_2385989_SNP [dm6]	T	G	3.283e^-4	0.659	INTRON PsGEF	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7003668	X_7003668_SNP [dm3] X_7109635_SNP [dm6]	T	G	3.283e^-4	0.659	UTR_5_PRIME fz4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	769576	X_769576_SNP [dm3] X_875543_SNP [dm6]	T	G	3.283e^-4	0.659	UPSTREAM CG11664 INTRON CG43867	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9193363	X_9193363_SNP [dm3] X_9299330_SNP [dm6]	G	A	3.283e^-4	0.659	INTRON lz
X	9746625	X_9746625_SNP [dm3] X_9852592_SNP [dm6]	T	C	3.283e^-4	0.659	UTR_3_PRIME CG32698
3R	26742040	3R_26742040_SNP [dm3] 3R_30916318_SNP [dm6]	C	G	3.326e^-4	0.667	SYNONYMOUS_CODING Ptx1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11539367	2L_11539367_SNP [dm3] 2L_11539367_SNP [dm6]	A	G	3.705e^-4	0.722	INTERGENIC
2L	14511298	2L_14511298_SNP [dm3] 2L_14511298_SNP [dm6]	A	G	3.705e^-4	0.722	EXON CR45693	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	15734913	2L_15734913_SNP [dm3] 2L_15734913_SNP [dm6]	C	T	3.705e^-4	0.722	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	8246624	2L_8246624_SNP [dm3] 2L_8246624_SNP [dm6]	G	A	3.705e^-4	0.722	INTRON CG8086
2L	9525269	2L_9525269_SNP [dm3] 2L_9525269_SNP [dm6]	T	C	3.705e^-4	0.722	INTRON Oatp30B	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	12694278	2R_12694278_SNP [dm3] 2R_16806773_SNP [dm6]	G	A	3.705e^-4	0.722	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14120004	2R_14120004_SNP [dm3] 2R_18232499_SNP [dm6]	A	T	3.705e^-4	0.722	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	18060386	2R_18060386_SNP [dm3] 2R_22172881_SNP [dm6]	G	T	3.705e^-4	0.722	NON_SYNONYMOUS_CODING CG3045 DOWNSTREAM a
2R	3601535	2R_3601535_SNP [dm3] 2R_7714030_SNP [dm6]	A	G	3.705e^-4	0.722	SYNONYMOUS_CODING CG1942 UPSTREAM CG1946	TF binding site mE1_TFBS_cnc
2R	7463492	2R_7463492_SNP [dm3] 2R_11575987_SNP [dm6]	G	A	3.705e^-4	0.722	INTERGENIC
2R	8291149	2R_8291149_SNP [dm3] 2R_12403644_SNP [dm6]	A	T	3.705e^-4	0.722	INTRON Cpr49Ae	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi
2R	8553882	2R_8553882_SNP [dm3] 2R_12666377_SNP [dm6]	A	G	3.705e^-4	0.722	UPSTREAM nemy INTRON nemy	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1
2R	8877776	2R_8877776_SNP [dm3] 2R_12990271_SNP [dm6]	A	C	3.705e^-4	0.722	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Trl
3L	18317675	3L_18317675_SNP [dm3] 3L_18324575_SNP [dm6]	G	A	3.705e^-4	0.722	INTERGENIC
3L	4000405	3L_4000405_SNP [dm3] 3L_4000405_SNP [dm6]	A	G	3.705e^-4	0.722	INTERGENIC
3L	4642796	3L_4642796_SNP [dm3] 3L_4642796_SNP [dm6]	T	G	3.705e^-4	0.722	NON_SYNONYMOUS_CODING axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6855227	3L_6855227_SNP [dm3] 3L_6862127_SNP [dm6]	T	A	3.705e^-4	0.722	INTERGENIC
3R	16549069	3R_16549069_DEL [dm3] 3R_20723347_DEL [dm6]	CCCT	C	3.705e^-4	0.722	INTERGENIC
3R	8136366	3R_8136366_SNP [dm3] 3R_12310644_SNP [dm6]	C	T	3.705e^-4	0.722	UPSTREAM CG4066 INTERGENIC
X	12760533	X_12760533_INS [dm3] X_12866500_INS [dm6]	A	ATGT	3.705e^-4	0.722	INTRON Pde9
X	13716635	X_13716635_SNP [dm3] X_13822602_SNP [dm6]	G	A	3.705e^-4	0.722	UPSTREAM Nup93-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8284912	X_8284912_SNP [dm3] X_8390879_SNP [dm6]	T	C	3.705e^-4	0.722	INTERGENIC
X	8284921	X_8284921_SNP [dm3] X_8390888_SNP [dm6]	T	C	3.705e^-4	0.722	INTERGENIC
X	16430689	X_16430689_INS [dm3] X_16536656_INS [dm6]	T	TT	3.708e^-4	0.722	INTERGENIC
3L	4418395	3L_4418395_INS [dm3] 3L_4418395_INS [dm6]	C	CAGC	3.865e^-4	0.745	UPSTREAM DOR
3R	15565655	3R_15565655_SNP [dm3] 3R_19739933_SNP [dm6]	A	G	3.865e^-4	0.745	INTRON GluClalpha
3R	18433173	3R_18433173_SNP [dm3] 3R_22607451_SNP [dm6]	T	C	3.865e^-4	0.745	UTR_3_PRIME Efa6
3R	19552795	3R_19552795_SNP [dm3] 3R_23727073_SNP [dm6]	A	G	3.865e^-4	0.745	INTRON CG10365
3R	20188549	3R_20188549_SNP [dm3] 3R_24362827_SNP [dm6]	T	C	3.865e^-4	0.745	SYNONYMOUS_CODING CG33339 UPSTREAM CG33340
3R	20461031	3R_20461031_SNP [dm3] 3R_24635309_SNP [dm6]	G	A	3.865e^-4	0.745	UTR_3_PRIME puf UPSTREAM CG43222 DOWNSTREAM atl
3R	23039217	3R_23039217_SNP [dm3] 3R_27213495_SNP [dm6]	G	T	3.865e^-4	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	6730687	3R_6730687_SNP [dm3] 3R_10904965_SNP [dm6]	C	G	3.865e^-4	0.745	INTERGENIC
3R	9675906	3R_9675906_SNP [dm3] 3R_13850184_SNP [dm6]	G	A	3.865e^-4	0.745	INTERGENIC
2L	10507244	2L_10507244_SNP [dm3] 2L_10507244_SNP [dm6]	C	T	4.070e^-4	0.769	SYNONYMOUS_CODING CG6094 UPSTREAM Myo31DF DOWNSTREAM CG7384 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	10507253	2L_10507253_SNP [dm3] 2L_10507253_SNP [dm6]	C	T	4.070e^-4	0.769	SYNONYMOUS_CODING CG6094 UPSTREAM Myo31DF DOWNSTREAM CG7384 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	18736727	2L_18736727_SNP [dm3] 2L_18736727_SNP [dm6]	C	G	4.070e^-4	0.769	DOWNSTREAM CR44769 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2738664	2L_2738664_SNP [dm3] 2L_2738664_SNP [dm6]	A	T	4.070e^-4	0.769	INTRON CG31689
2L	2738717	2L_2738717_SNP [dm3] 2L_2738717_SNP [dm6]	C	T	4.070e^-4	0.769	SYNONYMOUS_CODING CG31689
2L	3370139	2L_3370139_SNP [dm3] 2L_3370139_SNP [dm6]	T	A	4.070e^-4	0.769	UPSTREAM CG34394 INTRON CG34394
2L	7252674	2L_7252674_DEL [dm3] 2L_7252674_DEL [dm6]	GCTCA	G	4.070e^-4	0.769	INTRON CG13786
2R	13798812	2R_13798812_INS [dm3] 2R_17911307_INS [dm6]	A	AA	4.070e^-4	0.769	INTRON Elk
2R	17841821	2R_17841821_SNP [dm3] 2R_21954316_SNP [dm6]	C	T	4.070e^-4	0.769	UTR_3_PRIME CG13494 UPSTREAM CR43405
2R	19039146	2R_19039146_DEL [dm3] 2R_23151623_DEL [dm6]	CCTACTGGACGAC...	C	4.070e^-4	0.769	INTERGENIC
3L	1278200	3L_1278200_SNP [dm3] 3L_1278200_SNP [dm6]	A	G	4.070e^-4	0.769	INTRON CG32333
3L	1278207	3L_1278207_SNP [dm3] 3L_1278207_SNP [dm6]	T	A	4.070e^-4	0.769	INTRON CG32333
3L	1950516	3L_1950516_SNP [dm3] 3L_1950516_SNP [dm6]	A	T	4.070e^-4	0.769	UTR_3_PRIME mv DOWNSTREAM Cnb
X	10718860	X_10718860_SNP [dm3] X_10824827_SNP [dm6]	T	G	4.070e^-4	0.769	UPSTREAM Imp DOWNSTREAM CR45624 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	11118744	X_11118744_SNP [dm3] X_11224711_SNP [dm6]	T	C	4.070e^-4	0.769	SYNONYMOUS_CODING CG44422 UTR_3_PRIME CG44422 INTRON CG44422	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8289022	X_8289022_DEL [dm3] X_8394989_DEL [dm6]	CCC	A	4.070e^-4	0.769	INTERGENIC
X	8553147	X_8553147_SNP [dm3] X_8659114_SNP [dm6]	G	C	4.070e^-4	0.769	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	8073549	3R_8073549_SNP [dm3] 3R_12247827_SNP [dm6]	C	A	4.371e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	20515253	X_20515253_DEL [dm3] X_20644226_DEL [dm6]	TT	T	4.371e^-4	0.806	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	22733521	3L_22733521_SNP [dm3] 3L_22740421_SNP [dm6]	A	G	4.521e^-4	0.806	SYNONYMOUS_CODING l_3_04053 DOWNSTREAM CR45163	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13402672	2L_13402672_SNP [dm3] 2L_13402672_SNP [dm6]	G	C	4.576e^-4	0.806	INTRON CG7110
2L	13402685	2L_13402685_DEL [dm3] 2L_13402685_DEL [dm6]	TT	T	4.576e^-4	0.806	INTRON CG7110
2L	13402690	2L_13402690_SNP [dm3] 2L_13402690_SNP [dm6]	A	T	4.576e^-4	0.806	INTRON CG7110
2L	13402693	2L_13402693_SNP [dm3] 2L_13402693_SNP [dm6]	G	T	4.576e^-4	0.806	INTRON CG7110
2L	6861169	2L_6861169_SNP [dm3] 2L_6861169_SNP [dm6]	T	C	4.576e^-4	0.806	SYNONYMOUS_CODING Nha1 DOWNSTREAM l_2_k09022	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7077061	3L_7077061_SNP [dm3] 3L_7083961_SNP [dm6]	C	T	4.576e^-4	0.806	INTERGENIC
X	14131865	X_14131865_SNP [dm3] X_14237832_SNP [dm6]	C	T	4.576e^-4	0.806	UTR_5_PRIME Fbxl4 UPSTREAM CG1434	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	11229552	3L_11229552_SNP [dm3] 3L_11236452_SNP [dm6]	T	A	4.683e^-4	0.806	UPSTREAM Ir68a & 1 other DOWNSTREAM CR44718 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	9585095	X_9585095_SNP [dm3] X_9691062_SNP [dm6]	A	C	4.727e^-4	0.806	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3070349	3L_3070349_SNP [dm3] 3L_3070349_SNP [dm6]	C	T	4.906e^-4	0.806	NON_SYNONYMOUS_CODING CG32486 UPSTREAM CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	2845876	X_2845876_SNP [dm3] X_2951843_SNP [dm6]	C	T	4.906e^-4	0.806	UTR_3_PRIME rst INTRON kirre
3L	15308444	3L_15308444_SNP [dm3] 3L_15315344_SNP [dm6]	T	G	4.921e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	11378363	3L_11378363_SNP [dm3] 3L_11385263_SNP [dm6]	G	T	5.033e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_inv
3L	13745955	3L_13745955_SNP [dm3] 3L_13752855_SNP [dm6]	T	C	5.038e^-4	0.806	INTRON bru-3
3R	9275945	3R_9275945_SNP [dm3] 3R_13450223_SNP [dm6]	A	G	5.038e^-4	0.806	UPSTREAM CG14372 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9849053	3L_9849053_SNP [dm3] 3L_9855953_SNP [dm6]	T	C	5.043e^-4	0.806	UPSTREAM RasGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv
3R	17788384	3R_17788384_SNP [dm3] 3R_21962662_SNP [dm6]	A	G	5.043e^-4	0.806	INTRON Eip93F
2L	18416042	2L_18416042_SNP [dm3] 2L_18416042_SNP [dm6]	C	G	5.160e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2R	451593	2R_451593_SNP [dm3] 2R_4564088_SNP [dm6]	T	G	5.160e^-4	0.806	INTRON Stlk	transposable element FlyBase
3L	6903295	3L_6903295_SNP [dm3] 3L_6910195_SNP [dm6]	C	G	5.160e^-4	0.806	INTERGENIC
X	18053848	X_18053848_SNP [dm3] X_18159815_SNP [dm6]	T	A	5.160e^-4	0.806	INTRON Frq1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	8764674	X_8764674_SNP [dm3] X_8870641_SNP [dm6]	G	A	5.160e^-4	0.806	SYNONYMOUS_CODING CG12075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6544823	3L_6544823_DEL [dm3] 3L_6551723_DEL [dm6]	CC	C	5.276e^-4	0.806	UTR_5_PRIME CG18769 INTRON CG18769	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7853841	3L_7853841_SNP [dm3] 3L_7860741_SNP [dm6]	C	A	5.276e^-4	0.806	INTRON Pdp1
X	16243855	X_16243855_SNP [dm3] X_16349822_SNP [dm6]	G	C	5.276e^-4	0.806	UPSTREAM sl INTERGENIC	TF binding site mE1_TFBS_Ubx
2L	1006271	2L_1006271_SNP [dm3] 2L_1006271_SNP [dm6]	G	A	5.368e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk
2L	10063207	2L_10063207_SNP [dm3] 2L_10063207_SNP [dm6]	T	C	5.368e^-4	0.806	SYNONYMOUS_CODING Spn31A DOWNSTREAM CG44153	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1006624	2L_1006624_SNP [dm3] 2L_1006624_SNP [dm6]	G	T	5.368e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	10137798	2L_10137798_SNP [dm3] 2L_10137798_SNP [dm6]	C	A	5.368e^-4	0.806	INTRON CG44153
2L	10137806	2L_10137806_SNP [dm3] 2L_10137806_SNP [dm6]	G	T	5.368e^-4	0.806	INTRON CG44153
2L	10379117	2L_10379117_SNP [dm3] 2L_10379117_SNP [dm6]	G	T	5.368e^-4	0.806	NON_SYNONYMOUS_CODING dpr19 UPSTREAM gny
2L	10583841	2L_10583841_SNP [dm3] 2L_10583841_SNP [dm6]	C	T	5.368e^-4	0.806	INTRON Trim9
2L	10586312	2L_10586312_SNP [dm3] 2L_10586312_SNP [dm6]	C	T	5.368e^-4	0.806	INTRON Trim9	TF binding site mE1_TFBS_chinmo
2L	10919766	2L_10919766_SNP [dm3] 2L_10919766_SNP [dm6]	G	A	5.368e^-4	0.806	INTRON dpr2
2L	10919775	2L_10919775_SNP [dm3] 2L_10919775_SNP [dm6]	T	A	5.368e^-4	0.806	INTRON dpr2
2L	11093822	2L_11093822_SNP [dm3] 2L_11093822_SNP [dm6]	G	A	5.368e^-4	0.806	SYNONYMOUS_CODING CG4705	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1142525	2L_1142525_SNP [dm3] 2L_1142525_SNP [dm6]	G	T	5.368e^-4	0.806	UPSTREAM CR45717 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2L	11631858	2L_11631858_SNP [dm3] 2L_11631858_SNP [dm6]	C	G	5.368e^-4	0.806	INTERGENIC
2L	11631883	2L_11631883_SNP [dm3] 2L_11631883_SNP [dm6]	T	A	5.368e^-4	0.806	INTERGENIC
2L	11663359	2L_11663359_SNP [dm3] 2L_11663359_SNP [dm6]	G	A	5.368e^-4	0.806	NON_SYNONYMOUS_CODING CG44477 DOWNSTREAM CR44480
2L	11826753	2L_11826753_INS [dm3] 2L_11826753_INS [dm6]	A	AA	5.368e^-4	0.806	DOWNSTREAM esc INTRON Pde1c
2L	12242149	2L_12242149_SNP [dm3] 2L_12242149_SNP [dm6]	C	A	5.368e^-4	0.806	INTRON aret	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12777419	2L_12777419_SNP [dm3] 2L_12777419_SNP [dm6]	C	T	5.368e^-4	0.806	INTERGENIC
2L	12797196	2L_12797196_SNP [dm3] 2L_12797196_SNP [dm6]	C	T	5.368e^-4	0.806	INTERGENIC
2L	1401755	2L_1401755_SNP [dm3] 2L_1401755_SNP [dm6]	T	A	5.368e^-4	0.806	INTRON lea	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14490784	2L_14490784_SNP [dm3] 2L_14490784_SNP [dm6]	G	A	5.368e^-4	0.806	UPSTREAM noc INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2L	14718495	2L_14718495_SNP [dm3] 2L_14718495_SNP [dm6]	C	T	5.368e^-4	0.806	INTERGENIC
2L	15784653	2L_15784653_SNP [dm3] 2L_15784653_SNP [dm6]	G	A	5.368e^-4	0.806	SYNONYMOUS_CODING CG18109
2L	16049515	2L_16049515_SNP [dm3] 2L_16049515_SNP [dm6]	G	C	5.368e^-4	0.806	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16049607	2L_16049607_SNP [dm3] 2L_16049607_SNP [dm6]	T	G	5.368e^-4	0.806	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16049620	2L_16049620_SNP [dm3] 2L_16049620_SNP [dm6]	A	T	5.368e^-4	0.806	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16569709	2L_16569709_SNP [dm3] 2L_16569709_SNP [dm6]	A	C	5.368e^-4	0.806	INTRON CG42389
2L	16569713	2L_16569713_SNP [dm3] 2L_16569713_SNP [dm6]	C	G	5.368e^-4	0.806	INTRON CG42389
2L	17889503	2L_17889503_SNP [dm3] 2L_17889503_SNP [dm6]	T	C	5.368e^-4	0.806	INTERGENIC
2L	1789583	2L_1789583_SNP [dm3] 2L_1789583_SNP [dm6]	T	C	5.368e^-4	0.806	STOP_LOST Gr22d
2L	2023957	2L_2023957_SNP [dm3] 2L_2023957_SNP [dm6]	G	C	5.368e^-4	0.806	UPSTREAM CG4238 INTRON CG4238
2L	2830861	2L_2830861_SNP [dm3] 2L_2830861_SNP [dm6]	G	C	5.368e^-4	0.806	UPSTREAM Duox INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3322587	2L_3322587_SNP [dm3] 2L_3322587_SNP [dm6]	A	T	5.368e^-4	0.806	INTRON CG8837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3419144	2L_3419144_SNP [dm3] 2L_3419144_SNP [dm6]	C	T	5.368e^-4	0.806	INTRON pgant2
2L	3425882	2L_3425882_SNP [dm3] 2L_3425882_SNP [dm6]	T	C	5.368e^-4	0.806	INTRON pgant2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3426140	2L_3426140_SNP [dm3] 2L_3426140_SNP [dm6]	T	C	5.368e^-4	0.806	INTRON pgant2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3426509	2L_3426509_SNP [dm3] 2L_3426509_SNP [dm6]	T	A	5.368e^-4	0.806	UTR_5_PRIME pgant2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	3427113	2L_3427113_SNP [dm3] 2L_3427113_SNP [dm6]	A	T	5.368e^-4	0.806	UPSTREAM pgant2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3429382	2L_3429382_SNP [dm3] 2L_3429382_SNP [dm6]	G	T	5.368e^-4	0.806	INTERGENIC
2L	3436950	2L_3436950_SNP [dm3] 2L_3436950_SNP [dm6]	C	G	5.368e^-4	0.806	INTERGENIC
2L	3438407	2L_3438407_SNP [dm3] 2L_3438407_SNP [dm6]	C	A	5.368e^-4	0.806	INTERGENIC
2L	4300060	2L_4300060_DEL [dm3] 2L_4300060_DEL [dm6]	AA	A	5.368e^-4	0.806	INTRON tutl
2L	434980	2L_434980_SNP [dm3] 2L_434980_SNP [dm6]	G	T	5.368e^-4	0.806	INTRON ex
2L	4585073	2L_4585073_SNP [dm3] 2L_4585073_SNP [dm6]	T	C	5.368e^-4	0.806	INTRON dp
2L	536771	2L_536771_SNP [dm3] 2L_536771_SNP [dm6]	G	A	5.368e^-4	0.806	NON_SYNONYMOUS_CODING ush	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5556165	2L_5556165_SNP [dm3] 2L_5556165_SNP [dm6]	A	G	5.368e^-4	0.806	SYNONYMOUS_CODING GluRIIA
2L	6277845	2L_6277845_SNP [dm3] 2L_6277845_SNP [dm6]	T	G	5.368e^-4	0.806	INTRON Ddr
2L	7129700	2L_7129700_SNP [dm3] 2L_7129700_SNP [dm6]	A	G	5.368e^-4	0.806	INTRON Pvf3
2L	7337621	2L_7337621_SNP [dm3] 2L_7337621_SNP [dm6]	T	G	5.368e^-4	0.806	INTRON Wnt6
2L	8762613	2L_8762613_SNP [dm3] 2L_8762613_SNP [dm6]	C	G	5.368e^-4	0.806	INTERGENIC
2L	8923286	2L_8923286_SNP [dm3] 2L_8923286_SNP [dm6]	T	A	5.368e^-4	0.806	NON_SYNONYMOUS_CODING CG34398 INTRON CG34398	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9276727	2L_9276727_SNP [dm3] 2L_9276727_SNP [dm6]	C	T	5.368e^-4	0.806	INTRON Ggamma30A
2L	9371018	2L_9371018_SNP [dm3] 2L_9371018_SNP [dm6]	A	G	5.368e^-4	0.806	UTR_3_PRIME Shawl
2L	9375349	2L_9375349_SNP [dm3] 2L_9375349_SNP [dm6]	T	C	5.368e^-4	0.806	INTRON Shawl
2L	9376018	2L_9376018_SNP [dm3] 2L_9376018_SNP [dm6]	C	T	5.368e^-4	0.806	INTRON Shawl
2L	951407	2L_951407_SNP [dm3] 2L_951407_SNP [dm6]	G	T	5.368e^-4	0.806	INTRON CG4341	TF binding site mE1_TFBS_chinmo
2L	951824	2L_951824_SNP [dm3] 2L_951824_SNP [dm6]	G	A	5.368e^-4	0.806	SYNONYMOUS_CODING CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	952457	2L_952457_SNP [dm3] 2L_952457_SNP [dm6]	C	T	5.368e^-4	0.806	SYNONYMOUS_CODING CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	994897	2L_994897_SNP [dm3] 2L_994897_SNP [dm6]	T	G	5.368e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	996495	2L_996495_SNP [dm3] 2L_996495_SNP [dm6]	C	G	5.368e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	996499	2L_996499_SNP [dm3] 2L_996499_SNP [dm6]	C	A	5.368e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10197936	2R_10197936_SNP [dm3] 2R_14310431_SNP [dm6]	G	A	5.368e^-4	0.806	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
2R	10395109	2R_10395109_SNP [dm3] 2R_14507604_SNP [dm6]	C	T	5.368e^-4	0.806	SYNONYMOUS_CODING Asx
2R	11104198	2R_11104198_SNP [dm3] 2R_15216693_SNP [dm6]	A	G	5.368e^-4	0.806	NON_SYNONYMOUS_CODING CG11808 DOWNSTREAM mRpL41	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	11827736	2R_11827736_SNP [dm3] 2R_15940231_SNP [dm6]	T	A	5.368e^-4	0.806	UPSTREAM Mlf DOWNSTREAM CG8299 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14566503	2R_14566503_SNP [dm3] 2R_18678998_SNP [dm6]	G	A	5.368e^-4	0.806	SYNONYMOUS_CODING CG44435 UTR_3_PRIME CG44434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2R	15812441	2R_15812441_DEL [dm3] 2R_19924936_DEL [dm6]	ACTAGGAAATCTAA...	A	5.368e^-4	0.806	DOWNSTREAM CR44626 INTERGENIC
2R	15875566	2R_15875566_SNP [dm3] 2R_19988061_SNP [dm6]	C	T	5.368e^-4	0.806	INTERGENIC
2R	16155734	2R_16155734_SNP [dm3] 2R_20268229_SNP [dm6]	G	C	5.368e^-4	0.806	SYNONYMOUS_CODING CG8908	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16285351	2R_16285351_SNP [dm3] 2R_20397846_SNP [dm6]	A	G	5.368e^-4	0.806	INTERGENIC
2R	16517967	2R_16517967_SNP [dm3] 2R_20630462_SNP [dm6]	G	C	5.368e^-4	0.806	INTRON Rcd6
2R	17845855	2R_17845855_SNP [dm3] 2R_21958350_SNP [dm6]	C	T	5.368e^-4	0.806	INTERGENIC
2R	18009028	2R_18009028_DEL [dm3] 2R_22121523_DEL [dm6]	TAAAT	C	5.368e^-4	0.806	UPSTREAM mei-S332 INTRON Vrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	18188563	2R_18188563_SNP [dm3] 2R_22301058_SNP [dm6]	C	A	5.368e^-4	0.806	INTRON wdp	TF binding site mE1_TFBS_cad
2R	18835500	2R_18835500_SNP [dm3] 2R_22947977_SNP [dm6]	G	T	5.368e^-4	0.806	INTERGENIC
2R	19282686	2R_19282686_SNP [dm3] 2R_23395163_SNP [dm6]	A	T	5.368e^-4	0.806	UTR_5_PRIME CG3530 INTRON CG3530	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
2R	1991996	2R_1991996_SNP [dm3] 2R_6104491_SNP [dm6]	G	A	5.368e^-4	0.806	INTRON EcR	TF binding site BDTNP1_TFBS_twi
2R	231247	2R_231247_SNP [dm3] 2R_4343742_SNP [dm6]	T	A	5.368e^-4	0.806	INTRON Gprk1
2R	380585	2R_380585_SNP [dm3] 2R_4493080_SNP [dm6]	G	T	5.368e^-4	0.806	INTERGENIC	transposable element FlyBase
2R	5421492	2R_5421492_SNP [dm3] 2R_9533987_SNP [dm6]	A	T	5.368e^-4	0.806	SYNONYMOUS_CODING brp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5719767	2R_5719767_SNP [dm3] 2R_9832262_SNP [dm6]	A	G	5.368e^-4	0.806	UPSTREAM hebe INTRON hebe
2R	6165913	2R_6165913_SNP [dm3] 2R_10278408_SNP [dm6]	A	G	5.368e^-4	0.806	UPSTREAM CAP INTRON CAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	7512029	2R_7512029_SNP [dm3] 2R_11624524_SNP [dm6]	C	G	5.368e^-4	0.806	SYNONYMOUS_CODING CG9005	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7783203	2R_7783203_DEL [dm3] 2R_11895698_DEL [dm6]	ACAA	A	5.368e^-4	0.806	UTR_3_PRIME Ef1alpha48D DOWNSTREAM MCPH1 & 1 other
2R	7818451	2R_7818451_SNP [dm3] 2R_11930946_SNP [dm6]	T	C	5.368e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_Med
2R	8266024	2R_8266024_SNP [dm3] 2R_12378519_SNP [dm6]	C	A	5.368e^-4	0.806	INTRON Cpr49Ab	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8629830	2R_8629830_SNP [dm3] 2R_12742325_SNP [dm6]	G	A	5.368e^-4	0.806	INTRON CG42663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10112507	3L_10112507_SNP [dm3] 3L_10119407_SNP [dm6]	G	T	5.368e^-4	0.806	INTRON dpr6
3L	1115953	3L_1115953_SNP [dm3] 3L_1115953_SNP [dm6]	T	C	5.368e^-4	0.806	INTERGENIC
3L	11177814	3L_11177814_DEL [dm3] 3L_11184714_DEL [dm6]	TT	T	5.368e^-4	0.806	INTRON GlcAT-P
3L	1263567	3L_1263567_DEL [dm3] 3L_1263567_DEL [dm6]	AA	A	5.368e^-4	0.806	INTRON CG9134
3L	13286907	3L_13286907_INS [dm3] 3L_13293807_INS [dm6]	G	GAAAA	5.368e^-4	0.806	INTERGENIC
3L	1369877	3L_1369877_SNP [dm3] 3L_1369877_SNP [dm6]	T	A	5.368e^-4	0.806	UPSTREAM ru INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14281192	3L_14281192_SNP [dm3] 3L_14288092_SNP [dm6]	C	T	5.368e^-4	0.806	INTRON fz	TF binding site mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA
3L	14786696	3L_14786696_SNP [dm3] 3L_14793596_SNP [dm6]	A	G	5.368e^-4	0.806	INTRON CG9425
3L	14786718	3L_14786718_SNP [dm3] 3L_14793618_SNP [dm6]	C	T	5.368e^-4	0.806	INTRON CG9425
3L	14787084	3L_14787084_SNP [dm3] 3L_14793984_SNP [dm6]	T	C	5.368e^-4	0.806	SYNONYMOUS_CODING CG9425	TF binding site mE1_TFBS_cad
3L	14788941	3L_14788941_SNP [dm3] 3L_14795841_SNP [dm6]	G	T	5.368e^-4	0.806	SYNONYMOUS_CODING CG9425	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	14867320	3L_14867320_SNP [dm3] 3L_14874220_SNP [dm6]	T	C	5.368e^-4	0.806	INTRON CG17839
3L	15312583	3L_15312583_SNP [dm3] 3L_15319483_SNP [dm6]	G	T	5.368e^-4	0.806	INTERGENIC
3L	1634976	3L_1634976_SNP [dm3] 3L_1634976_SNP [dm6]	T	C	5.368e^-4	0.806	INTRON nSyb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17555461	3L_17555461_SNP [dm3] 3L_17562361_SNP [dm6]	G	A	5.368e^-4	0.806	SYNONYMOUS_CODING Eip74EF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17555638	3L_17555638_SNP [dm3] 3L_17562538_SNP [dm6]	T	C	5.368e^-4	0.806	SYNONYMOUS_CODING Eip74EF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17555722	3L_17555722_SNP [dm3] 3L_17562622_SNP [dm6]	G	C	5.368e^-4	0.806	SYNONYMOUS_CODING Eip74EF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17891665	3L_17891665_SNP [dm3] 3L_17898565_SNP [dm6]	G	A	5.368e^-4	0.806	DOWNSTREAM Prestin INTERGENIC
3L	19318673	3L_19318673_SNP [dm3] 3L_19325573_SNP [dm6]	T	C	5.368e^-4	0.806	INTRON pip
3L	21247670	3L_21247670_SNP [dm3] 3L_21254570_SNP [dm6]	G	T	5.368e^-4	0.806	INTRON Eip78C

By genomic position
Variant impact
Gene name

Age phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results