DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.817e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

8005 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	10046382	2L_10046382_SNP [dm3] 2L_10046382_SNP [dm6]	A	C	2.737e^-4	0.165	INTERGENIC
2L	10152030	2L_10152030_SNP [dm3] 2L_10152030_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON CG44153 & 1 other
2L	10175708	2L_10175708_SNP [dm3] 2L_10175708_SNP [dm6]	G	A	2.737e^-4	0.165	INTRON CG44153
2L	10175782	2L_10175782_SNP [dm3] 2L_10175782_SNP [dm6]	G	A	2.737e^-4	0.165	INTRON CG44153
2L	10558634	2L_10558634_SNP [dm3] 2L_10558634_SNP [dm6]	A	T	2.737e^-4	0.165	INTRON Trim9	TF binding site mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	10610046	2L_10610046_SNP [dm3] 2L_10610046_SNP [dm6]	C	G	2.737e^-4	0.165	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10785769	2L_10785769_SNP [dm3] 2L_10785769_SNP [dm6]	A	G	2.737e^-4	0.165	INTRON CG31869 EXON CR44582
2L	10989253	2L_10989253_SNP [dm3] 2L_10989253_SNP [dm6]	G	A	2.737e^-4	0.165	UPSTREAM CG16833 DOWNSTREAM CG12253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11955098	2L_11955098_SNP [dm3] 2L_11955098_SNP [dm6]	G	A	2.737e^-4	0.165	EXON CR43314
2L	11985228	2L_11985228_SNP [dm3] 2L_11985228_SNP [dm6]	G	A	2.737e^-4	0.165	SYNONYMOUS_CODING CG6686 UTR_3_PRIME CG6686 DOWNSTREAM CG16965	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1316778	2L_1316778_SNP [dm3] 2L_1316778_SNP [dm6]	T	A	2.737e^-4	0.165	INTERGENIC
2L	1332603	2L_1332603_SNP [dm3] 2L_1332603_SNP [dm6]	C	T	2.737e^-4	0.165	INTERGENIC
2L	13432570	2L_13432570_SNP [dm3] 2L_13432570_SNP [dm6]	T	C	2.737e^-4	0.165	INTRON CG42784
2L	13730579	2L_13730579_SNP [dm3] 2L_13730579_SNP [dm6]	A	T	2.737e^-4	0.165	INTERGENIC
2L	13735601	2L_13735601_SNP [dm3] 2L_13735601_SNP [dm6]	A	G	2.737e^-4	0.165	UPSTREAM CG31813 INTERGENIC
2L	1388851	2L_1388851_SNP [dm3] 2L_1388851_SNP [dm6]	A	C	2.737e^-4	0.165	INTRON lea
2L	1436172	2L_1436172_SNP [dm3] 2L_1436172_SNP [dm6]	T	C	2.737e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14850605	2L_14850605_SNP [dm3] 2L_14850605_SNP [dm6]	T	A	2.737e^-4	0.165	INTRON CG15279
2L	14892130	2L_14892130_SNP [dm3] 2L_14892130_SNP [dm6]	T	C	2.737e^-4	0.165	INTERGENIC
2L	14909333	2L_14909333_SNP [dm3] 2L_14909333_SNP [dm6]	A	G	2.737e^-4	0.165	INTRON CG42313
2L	15343588	2L_15343588_SNP [dm3] 2L_15343588_SNP [dm6]	T	A	2.737e^-4	0.165	INTERGENIC
2L	15408884	2L_15408884_SNP [dm3] 2L_15408884_SNP [dm6]	A	T	2.737e^-4	0.165	INTERGENIC
2L	15747445	2L_15747445_SNP [dm3] 2L_15747445_SNP [dm6]	A	G	2.737e^-4	0.165	UPSTREAM CycE & 1 other DOWNSTREAM CR44974 INTRON CycE	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	15936911	2L_15936911_SNP [dm3] 2L_15936911_SNP [dm6]	A	T	2.737e^-4	0.165	INTRON beat-Ib
2L	16227606	2L_16227606_SNP [dm3] 2L_16227606_SNP [dm6]	T	A	2.737e^-4	0.165	INTERGENIC
2L	16381965	2L_16381965_SNP [dm3] 2L_16381965_SNP [dm6]	A	C	2.737e^-4	0.165	INTERGENIC
2L	16398612	2L_16398612_SNP [dm3] 2L_16398612_SNP [dm6]	G	A	2.737e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	16495368	2L_16495368_SNP [dm3] 2L_16495368_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	16495441	2L_16495441_SNP [dm3] 2L_16495441_SNP [dm6]	T	C	2.737e^-4	0.165	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	16541834	2L_16541834_SNP [dm3] 2L_16541834_SNP [dm6]	C	T	2.737e^-4	0.165	UPSTREAM CG31816 INTERGENIC
2L	16552475	2L_16552475_SNP [dm3] 2L_16552475_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON CG42389
2L	16782048	2L_16782048_SNP [dm3] 2L_16782048_SNP [dm6]	A	T	2.737e^-4	0.165	INTRON Mhc	TF binding site mE1_TFBS_chinmo
2L	16931936	2L_16931936_SNP [dm3] 2L_16931936_SNP [dm6]	A	T	2.737e^-4	0.165	INTERGENIC
2L	16936043	2L_16936043_SNP [dm3] 2L_16936043_SNP [dm6]	A	G	2.737e^-4	0.165	INTERGENIC
2L	18214668	2L_18214668_SNP [dm3] 2L_18214668_SNP [dm6]	A	G	2.737e^-4	0.165	INTRON CG42750
2L	19233521	2L_19233521_SNP [dm3] 2L_19233521_SNP [dm6]	C	T	2.737e^-4	0.165	INTERGENIC
2L	19233543	2L_19233543_SNP [dm3] 2L_19233543_SNP [dm6]	A	T	2.737e^-4	0.165	INTERGENIC
2L	19853839	2L_19853839_SNP [dm3] 2L_19853839_SNP [dm6]	A	C	2.737e^-4	0.165	INTRON sick
2L	19915232	2L_19915232_SNP [dm3] 2L_19915232_SNP [dm6]	T	A	2.737e^-4	0.165	INTRON sick	TF binding site mE1_TFBS_bab1
2L	20594789	2L_20594789_SNP [dm3] 2L_20594789_SNP [dm6]	A	G	2.737e^-4	0.165	INTRON CR44909
2L	20665210	2L_20665210_SNP [dm3] 2L_20665210_SNP [dm6]	T	A	2.737e^-4	0.165	UPSTREAM CG31678 INTRON CG31678 EXON CR45004
2L	20934506	2L_20934506_DEL [dm3] 2L_20934506_DEL [dm6]	TTTAT	T	2.737e^-4	0.165	UPSTREAM CG9270 INTERGENIC
2L	2093907	2L_2093907_INS [dm3] 2L_2093907_INS [dm6]	A	AA	2.737e^-4	0.165	INTRON dpr3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2097587	2L_2097587_SNP [dm3] 2L_2097587_SNP [dm6]	T	C	2.737e^-4	0.165	INTRON dpr3
2L	21009278	2L_21009278_SNP [dm3] 2L_21009278_SNP [dm6]	T	A	2.737e^-4	0.165	INTRON CG42238	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	21119254	2L_21119254_SNP [dm3] 2L_21119254_SNP [dm6]	C	G	2.737e^-4	0.165	INTRON Nhe2
2L	21764438	2L_21764438_SNP [dm3] 2L_21764438_SNP [dm6]	C	A	2.737e^-4	0.165	INTRON CG31612
2L	22111021	2L_22111021_SNP [dm3] 2L_22111021_SNP [dm6]	T	G	2.737e^-4	0.165	DOWNSTREAM CG6675 INTERGENIC	transposable element FlyBase
2L	2264980	2L_2264980_SNP [dm3] 2L_2264980_SNP [dm6]	G	A	2.737e^-4	0.165	NON_SYNONYMOUS_CODING CG34049 DOWNSTREAM CG4270
2L	2387522	2L_2387522_SNP [dm3] 2L_2387522_SNP [dm6]	A	G	2.737e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	2585061	2L_2585061_SNP [dm3] 2L_2585061_SNP [dm6]	C	A	2.737e^-4	0.165	INTRON Drp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2796422	2L_2796422_SNP [dm3] 2L_2796422_SNP [dm6]	A	T	2.737e^-4	0.165	UPSTREAM Syt1 INTRON Syt1
2L	3409785	2L_3409785_DEL [dm3] 2L_3409785_DEL [dm6]	CC	C	2.737e^-4	0.165	UPSTREAM CG8840 INTRON pgant2
2L	3943760	2L_3943760_SNP [dm3] 2L_3943760_SNP [dm6]	A	G	2.737e^-4	0.165	INTRON fred
2L	3957794	2L_3957794_SNP [dm3] 2L_3957794_SNP [dm6]	T	C	2.737e^-4	0.165	INTRON fred
2L	4169688	2L_4169688_SNP [dm3] 2L_4169688_SNP [dm6]	G	A	2.737e^-4	0.165	INTERGENIC
2L	4227104	2L_4227104_SNP [dm3] 2L_4227104_SNP [dm6]	C	G	2.737e^-4	0.165	UPSTREAM RpL40 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2L	4331908	2L_4331908_SNP [dm3] 2L_4331908_SNP [dm6]	A	T	2.737e^-4	0.165	DOWNSTREAM CG16857 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_Trl
2L	4427843	2L_4427843_SNP [dm3] 2L_4427843_SNP [dm6]	G	A	2.737e^-4	0.165	INTRON CG15431
2L	4427850	2L_4427850_SNP [dm3] 2L_4427850_SNP [dm6]	A	G	2.737e^-4	0.165	INTRON CG15431
2L	4896875	2L_4896875_SNP [dm3] 2L_4896875_SNP [dm6]	A	G	2.737e^-4	0.165	INTRON CG3036
2L	5337047	2L_5337047_SNP [dm3] 2L_5337047_SNP [dm6]	C	G	2.737e^-4	0.165	UPSTREAM fusl INTRON fusl
2L	5408274	2L_5408274_SNP [dm3] 2L_5408274_SNP [dm6]	T	A	2.737e^-4	0.165	INTRON H15	TF binding site mE1_TFBS_cad
2L	5447080	2L_5447080_SNP [dm3] 2L_5447080_SNP [dm6]	T	C	2.737e^-4	0.165	INTERGENIC
2L	5958205	2L_5958205_SNP [dm3] 2L_5958205_SNP [dm6]	A	T	2.737e^-4	0.165	SYNONYMOUS_CODING Vm26Ac DOWNSTREAM Vm26Ab	TF binding site mE1_TFBS_cad
2L	6106395	2L_6106395_SNP [dm3] 2L_6106395_SNP [dm6]	T	A	2.737e^-4	0.165	INTRON stai
2L	6193583	2L_6193583_SNP [dm3] 2L_6193583_SNP [dm6]	A	C	2.737e^-4	0.165	INTRON CG34380	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6279844	2L_6279844_DEL [dm3] 2L_6279844_DEL [dm6]	CTATAA	C	2.737e^-4	0.165	INTRON Ddr
2L	6523236	2L_6523236_SNP [dm3] 2L_6523236_SNP [dm6]	T	G	2.737e^-4	0.165	INTRON CG31637	TF binding site mE1_TFBS_inv
2L	6533500	2L_6533500_SNP [dm3] 2L_6533500_SNP [dm6]	G	A	2.737e^-4	0.165	INTRON eya
2L	7173278	2L_7173278_SNP [dm3] 2L_7173278_SNP [dm6]	C	A	2.737e^-4	0.165	INTERGENIC
2L	7177949	2L_7177949_SNP [dm3] 2L_7177949_SNP [dm6]	G	A	2.737e^-4	0.165	EXON CR44613
2L	7189365	2L_7189365_SNP [dm3] 2L_7189365_SNP [dm6]	A	T	2.737e^-4	0.165	INTRON CG4496	TF binding site BDTNP1_TFBS_dl
2L	7254336	2L_7254336_SNP [dm3] 2L_7254336_SNP [dm6]	G	T	2.737e^-4	0.165	INTERGENIC
2L	7467865	2L_7467865_SNP [dm3] 2L_7467865_SNP [dm6]	G	A	2.737e^-4	0.165	INTRON CG6055	TF binding site mE1_TFBS_inv
2L	7578458	2L_7578458_SNP [dm3] 2L_7578458_SNP [dm6]	G	T	2.737e^-4	0.165	SYNONYMOUS_CODING RapGAP1
2L	7579121	2L_7579121_SNP [dm3] 2L_7579121_SNP [dm6]	T	A	2.737e^-4	0.165	UPSTREAM RapGAP1 INTERGENIC
2L	7973482	2L_7973482_SNP [dm3] 2L_7973482_SNP [dm6]	T	C	2.737e^-4	0.165	INTRON Snoo
2L	7991923	2L_7991923_SNP [dm3] 2L_7991923_SNP [dm6]	G	C	2.737e^-4	0.165	UPSTREAM pes INTRON pes	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	8002560	2L_8002560_SNP [dm3] 2L_8002560_SNP [dm6]	T	G	2.737e^-4	0.165	INTRON Wwox
2L	8351003	2L_8351003_SNP [dm3] 2L_8351003_SNP [dm6]	A	T	2.737e^-4	0.165	UTR_3_PRIME CG7778 DOWNSTREAM CG7778	TF binding site mE1_TFBS_zfh1
2L	8363493	2L_8363493_SNP [dm3] 2L_8363493_SNP [dm6]	C	A	2.737e^-4	0.165	UTR_3_PRIME RpS13 DOWNSTREAM RpS13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
2L	8390381	2L_8390381_SNP [dm3] 2L_8390381_SNP [dm6]	C	T	2.737e^-4	0.165	NON_SYNONYMOUS_CODING CG42820 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8634006	2L_8634006_SNP [dm3] 2L_8634006_SNP [dm6]	A	T	2.737e^-4	0.165	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8657178	2L_8657178_SNP [dm3] 2L_8657178_SNP [dm6]	G	A	2.737e^-4	0.165	INTRON Sema-1a
2L	8747199	2L_8747199_SNP [dm3] 2L_8747199_SNP [dm6]	A	T	2.737e^-4	0.165	INTERGENIC
2L	8762348	2L_8762348_SNP [dm3] 2L_8762348_SNP [dm6]	C	T	2.737e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9188558	2L_9188558_SNP [dm3] 2L_9188558_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON tai
2L	9232950	2L_9232950_SNP [dm3] 2L_9232950_SNP [dm6]	A	T	2.737e^-4	0.165	INTRON tai
2L	9257411	2L_9257411_MNP [dm3] 2L_9257411_MNP [dm6]	CTG	TAA	2.737e^-4	0.165	INTRON Ggamma30A	TF binding site BDTNP1_TFBS_z
2L	9257422	2L_9257422_SNP [dm3] 2L_9257422_SNP [dm6]	A	C	2.737e^-4	0.165	INTRON Ggamma30A	TF binding site BDTNP1_TFBS_z
2L	9257423	2L_9257423_DEL [dm3] 2L_9257423_DEL [dm6]	ATAATCT	A	2.737e^-4	0.165	INTRON Ggamma30A	TF binding site BDTNP1_TFBS_z
2L	9257444	2L_9257444_SNP [dm3] 2L_9257444_SNP [dm6]	T	G	2.737e^-4	0.165	INTRON Ggamma30A	TF binding site BDTNP1_TFBS_z
2L	9257445	2L_9257445_SNP [dm3] 2L_9257445_SNP [dm6]	C	G	2.737e^-4	0.165	INTRON Ggamma30A	TF binding site BDTNP1_TFBS_z
2L	9257454	2L_9257454_SNP [dm3] 2L_9257454_SNP [dm6]	T	G	2.737e^-4	0.165	INTRON Ggamma30A	TF binding site BDTNP1_TFBS_z
2L	9257466	2L_9257466_SNP [dm3] 2L_9257466_SNP [dm6]	G	A	2.737e^-4	0.165	INTRON Ggamma30A	TF binding site BDTNP1_TFBS_z
2L	9257475	2L_9257475_DEL [dm3] 2L_9257475_DEL [dm6]	ATGA	A	2.737e^-4	0.165	INTRON Ggamma30A	TF binding site BDTNP1_TFBS_z
2L	9304036	2L_9304036_SNP [dm3] 2L_9304036_SNP [dm6]	C	T	2.737e^-4	0.165	DOWNSTREAM CR42844 INTERGENIC
2R	10311636	2R_10311636_SNP [dm3] 2R_14424131_SNP [dm6]	C	A	2.737e^-4	0.165	UTR_3_PRIME CG17386
2R	10341606	2R_10341606_SNP [dm3] 2R_14454101_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON Oaz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10548749	2R_10548749_SNP [dm3] 2R_14661244_SNP [dm6]	T	C	2.737e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10560440	2R_10560440_SNP [dm3] 2R_14672935_SNP [dm6]	T	G	2.737e^-4	0.165	NON_SYNONYMOUS_CODING mspo
2R	10934216	2R_10934216_SNP [dm3] 2R_15046711_SNP [dm6]	A	G	2.737e^-4	0.165	INTERGENIC
2R	10951866	2R_10951866_SNP [dm3] 2R_15064361_SNP [dm6]	A	G	2.737e^-4	0.165	INTERGENIC
2R	10963835	2R_10963835_SNP [dm3] 2R_15076330_SNP [dm6]	C	T	2.737e^-4	0.165	INTERGENIC
2R	11348569	2R_11348569_SNP [dm3] 2R_15461064_SNP [dm6]	C	T	2.737e^-4	0.165	NON_SYNONYMOUS_CODING CG43729 INTRON CG43729
2R	12035740	2R_12035740_SNP [dm3] 2R_16148235_SNP [dm6]	T	C	2.737e^-4	0.165	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_sens
2R	12466346	2R_12466346_SNP [dm3] 2R_16578841_SNP [dm6]	G	T	2.737e^-4	0.165	UPSTREAM Cdk4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	13504295	2R_13504295_SNP [dm3] 2R_17616790_SNP [dm6]	A	T	2.737e^-4	0.165	UTR_3_PRIME CG44403 INTRON CG10936 EXON snoRNA:Or-aca4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13551023	2R_13551023_SNP [dm3] 2R_17663518_SNP [dm6]	C	A	2.737e^-4	0.165	INTRON CCHa1-R
2R	14097453	2R_14097453_SNP [dm3] 2R_18209948_SNP [dm6]	C	T	2.737e^-4	0.165	DOWNSTREAM CG30114 EXON CR45147	TF binding site BDTNP1_TFBS_twi
2R	14461517	2R_14461517_SNP [dm3] 2R_18574012_SNP [dm6]	A	T	2.737e^-4	0.165	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14600864	2R_14600864_SNP [dm3] 2R_18713359_SNP [dm6]	T	C	2.737e^-4	0.165	INTERGENIC
2R	14615281	2R_14615281_SNP [dm3] 2R_18727776_SNP [dm6]	T	A	2.737e^-4	0.165	DOWNSTREAM List INTRON Hs3st-A
2R	14892248	2R_14892248_SNP [dm3] 2R_19004743_SNP [dm6]	C	T	2.737e^-4	0.165	SYNONYMOUS_CODING tn INTRON tn
2R	15593947	2R_15593947_SNP [dm3] 2R_19706442_SNP [dm6]	A	T	2.737e^-4	0.165	INTERGENIC	regulatory region REDfly_CRMs
2R	15679922	2R_15679922_SNP [dm3] 2R_19792417_SNP [dm6]	A	G	2.737e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15861270	2R_15861270_SNP [dm3] 2R_19973765_SNP [dm6]	A	G	2.737e^-4	0.165	INTERGENIC
2R	15861364	2R_15861364_SNP [dm3] 2R_19973859_SNP [dm6]	C	A	2.737e^-4	0.165	INTERGENIC
2R	16354251	2R_16354251_SNP [dm3] 2R_20466746_SNP [dm6]	T	A	2.737e^-4	0.165	INTRON CG12484
2R	16442211	2R_16442211_SNP [dm3] 2R_20554706_SNP [dm6]	G	A	2.737e^-4	0.165	INTERGENIC
2R	16443181	2R_16443181_DEL [dm3] 2R_20555676_DEL [dm6]	CC	T	2.737e^-4	0.165	INTERGENIC
2R	16588644	2R_16588644_SNP [dm3] 2R_20701139_SNP [dm6]	T	A	2.737e^-4	0.165	INTRON dpr
2R	16938102	2R_16938102_SNP [dm3] 2R_21050597_SNP [dm6]	C	G	2.737e^-4	0.165	UTR_3_PRIME shg	TF binding site BDTNP1_TFBS_dl
2R	16997375	2R_16997375_SNP [dm3] 2R_21109870_SNP [dm6]	G	A	2.737e^-4	0.165	INTRON ktub
2R	17238881	2R_17238881_DEL [dm3] 2R_21351376_DEL [dm6]	TATT	T	2.737e^-4	0.165	UPSTREAM CG17974 INTERGENIC
2R	17314474	2R_17314474_SNP [dm3] 2R_21426969_SNP [dm6]	C	A	2.737e^-4	0.165	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17361075	2R_17361075_SNP [dm3] 2R_21473570_SNP [dm6]	A	G	2.737e^-4	0.165	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17472523	2R_17472523_SNP [dm3] 2R_21585018_SNP [dm6]	C	G	2.737e^-4	0.165	UTR_3_PRIME CG30222	TF binding site BDTNP1_TFBS_dl
2R	17522870	2R_17522870_DEL [dm3] 2R_21635365_DEL [dm6]	AA	A	2.737e^-4	0.165	INTRON CG10321	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17531575	2R_17531575_SNP [dm3] 2R_21644070_SNP [dm6]	C	T	2.737e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17791899	2R_17791899_INS [dm3] 2R_21904394_INS [dm6]	A	AA	2.737e^-4	0.165	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17889683	2R_17889683_INS [dm3] 2R_22002178_INS [dm6]	T	TT	2.737e^-4	0.165	INTRON CG34370	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18086303	2R_18086303_SNP [dm3] 2R_22198798_SNP [dm6]	T	C	2.737e^-4	0.165	INTRON Swim
2R	18089205	2R_18089205_SNP [dm3] 2R_22201700_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON Swim EXON CR45376
2R	18117297	2R_18117297_SNP [dm3] 2R_22229792_SNP [dm6]	C	A	2.737e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1813054	2R_1813054_SNP [dm3] 2R_5925549_SNP [dm6]	G	T	2.737e^-4	0.165	SYNONYMOUS_CODING CG43366	TF binding site mE1_TFBS_cad
2R	18164469	2R_18164469_SNP [dm3] 2R_22276964_SNP [dm6]	G	A	2.737e^-4	0.165	INTRON dve	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18282546	2R_18282546_SNP [dm3] 2R_22395041_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON babos
2R	18927898	2R_18927898_SNP [dm3] 2R_23040375_SNP [dm6]	A	G	2.737e^-4	0.165	INTRON twi & 1 other
2R	19069775	2R_19069775_SNP [dm3] 2R_23182252_SNP [dm6]	G	A	2.737e^-4	0.165	INTRON CG34371	TF binding site mE1_TFBS_cad
2R	19102648	2R_19102648_SNP [dm3] 2R_23215125_SNP [dm6]	A	C	2.737e^-4	0.165	INTERGENIC
2R	19104825	2R_19104825_SNP [dm3] 2R_23217302_SNP [dm6]	A	G	2.737e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19104837	2R_19104837_SNP [dm3] 2R_23217314_SNP [dm6]	T	C	2.737e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19553722	2R_19553722_SNP [dm3] 2R_23666199_SNP [dm6]	G	A	2.737e^-4	0.165	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19597874	2R_19597874_INS [dm3] 2R_23710351_INS [dm6]	A	AAAA	2.737e^-4	0.165	UPSTREAM l_2_not DOWNSTREAM CR45326 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19908673	2R_19908673_SNP [dm3] 2R_24021150_SNP [dm6]	T	C	2.737e^-4	0.165	SYNONYMOUS_CODING CG3907	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	2769007	2R_2769007_SNP [dm3] 2R_6881502_SNP [dm6]	G	A	2.737e^-4	0.165	UPSTREAM Spn42Dc & 1 other INTRON Spn42Dc
2R	4294958	2R_4294958_SNP [dm3] 2R_8407453_SNP [dm6]	T	C	2.737e^-4	0.165	INTRON CG2121	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	5276370	2R_5276370_INS [dm3] 2R_9388865_INS [dm6]	T	TT	2.737e^-4	0.165	UTR_5_PRIME CG13954 UPSTREAM CG13954	TF binding site BDTNP1_TFBS_twi
2R	5831867	2R_5831867_SNP [dm3] 2R_9944362_SNP [dm6]	G	C	2.737e^-4	0.165	UTR_5_PRIME Mef2 INTRON Mef2
2R	6274872	2R_6274872_SNP [dm3] 2R_10387367_SNP [dm6]	A	C	2.737e^-4	0.165	INTRON CG42732
2R	6871137	2R_6871137_SNP [dm3] 2R_10983632_SNP [dm6]	T	G	2.737e^-4	0.165	INTRON luna
2R	6991416	2R_6991416_SNP [dm3] 2R_11103911_SNP [dm6]	G	A	2.737e^-4	0.165	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7136080	2R_7136080_SNP [dm3] 2R_11248575_SNP [dm6]	A	G	2.737e^-4	0.165	UTR_3_PRIME CG34227
2R	7403279	2R_7403279_SNP [dm3] 2R_11515774_SNP [dm6]	G	A	2.737e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	7451518	2R_7451518_SNP [dm3] 2R_11564013_SNP [dm6]	G	T	2.737e^-4	0.165	INTERGENIC
2R	7471171	2R_7471171_SNP [dm3] 2R_11583666_SNP [dm6]	C	T	2.737e^-4	0.165	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	7544560	2R_7544560_SNP [dm3] 2R_11657055_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8669207	2R_8669207_SNP [dm3] 2R_12781702_SNP [dm6]	T	A	2.737e^-4	0.165	INTRON sca	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	907480	2R_907480_SNP [dm3] 2R_5019975_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON Ir41a	transposable element FlyBase
2R	907481	2R_907481_SNP [dm3] 2R_5019976_SNP [dm6]	A	G	2.737e^-4	0.165	INTRON Ir41a	transposable element FlyBase
2R	9104891	2R_9104891_SNP [dm3] 2R_13217386_SNP [dm6]	A	T	2.737e^-4	0.165	NON_SYNONYMOUS_CODING CG4630	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9199866	2R_9199866_SNP [dm3] 2R_13312361_SNP [dm6]	G	C	2.737e^-4	0.165	INTERGENIC
2R	9663518	2R_9663518_SNP [dm3] 2R_13776013_SNP [dm6]	C	T	2.737e^-4	0.165	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10230421	3L_10230421_SNP [dm3] 3L_10237321_SNP [dm6]	C	T	2.737e^-4	0.165	DOWNSTREAM CR44542 INTERGENIC
3L	10357441	3L_10357441_SNP [dm3] 3L_10364341_SNP [dm6]	T	A	2.737e^-4	0.165	UPSTREAM CR44327 & 1 other EXON CR44327	TF binding site BDTNP1_TFBS_dl
3L	10545787	3L_10545787_SNP [dm3] 3L_10552687_SNP [dm6]	T	A	2.737e^-4	0.165	INTRON A2bp1
3L	10719203	3L_10719203_SNP [dm3] 3L_10726103_SNP [dm6]	A	C	2.737e^-4	0.165	INTERGENIC
3L	1072925	3L_1072925_SNP [dm3] 3L_1072925_SNP [dm6]	T	C	2.737e^-4	0.165	INTRON bab1
3L	10804937	3L_10804937_SNP [dm3] 3L_10811837_SNP [dm6]	A	T	2.737e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10804938	3L_10804938_SNP [dm3] 3L_10811838_SNP [dm6]	A	C	2.737e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10804940	3L_10804940_SNP [dm3] 3L_10811840_SNP [dm6]	C	T	2.737e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10808944	3L_10808944_SNP [dm3] 3L_10815844_SNP [dm6]	C	G	2.737e^-4	0.165	UTR_3_PRIME CG42831 UPSTREAM CR45247
3L	10822964	3L_10822964_INS [dm3] 3L_10829864_INS [dm6]	G	GTGGGCT	2.737e^-4	0.165	INTERGENIC
3L	11243491	3L_11243491_SNP [dm3] 3L_11250391_SNP [dm6]	A	G	2.737e^-4	0.165	DOWNSTREAM CR44716 EXON CR44717	TF binding site mE1_TFBS_inv
3L	11398840	3L_11398840_SNP [dm3] 3L_11405740_SNP [dm6]	A	G	2.737e^-4	0.165	EXON CR44363	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	1173400	3L_1173400_SNP [dm3] 3L_1173400_SNP [dm6]	G	A	2.737e^-4	0.165	SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11845992	3L_11845992_SNP [dm3] 3L_11852892_SNP [dm6]	C	A	2.737e^-4	0.165	INTRON CG44837
3L	11933122	3L_11933122_SNP [dm3] 3L_11940022_SNP [dm6]	G	T	2.737e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11953001	3L_11953001_SNP [dm3] 3L_11959901_SNP [dm6]	T	G	2.737e^-4	0.165	DOWNSTREAM CG43294 INTRON prc
3L	12059062	3L_12059062_SNP [dm3] 3L_12065962_SNP [dm6]	C	T	2.737e^-4	0.165	INTERGENIC
3L	1272814	3L_1272814_SNP [dm3] 3L_1272814_SNP [dm6]	T	G	2.737e^-4	0.165	INTRON CG9134	TF binding site mE1_TFBS_cad
3L	12888783	3L_12888783_SNP [dm3] 3L_12895683_SNP [dm6]	C	A	2.737e^-4	0.165	DOWNSTREAM CG14118 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12932250	3L_12932250_SNP [dm3] 3L_12939150_SNP [dm6]	C	A	2.737e^-4	0.165	INTERGENIC
3L	12961001	3L_12961001_SNP [dm3] 3L_12967901_SNP [dm6]	A	C	2.737e^-4	0.165	UPSTREAM Or69a INTERGENIC
3L	13185210	3L_13185210_SNP [dm3] 3L_13192110_SNP [dm6]	A	G	2.737e^-4	0.165	INTERGENIC
3L	13185301	3L_13185301_SNP [dm3] 3L_13192201_SNP [dm6]	C	A	2.737e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13229661	3L_13229661_INS [dm3] 3L_13236561_INS [dm6]	A	ATAGTAGGTA	2.737e^-4	0.165	INTRON caps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13242636	3L_13242636_SNP [dm3] 3L_13249536_SNP [dm6]	T	G	2.737e^-4	0.165	UPSTREAM tRNA:D2:69F & 1 other INTRON caps
3L	13282692	3L_13282692_SNP [dm3] 3L_13289592_SNP [dm6]	T	C	2.737e^-4	0.165	INTERGENIC
3L	13792591	3L_13792591_SNP [dm3] 3L_13799491_SNP [dm6]	T	A	2.737e^-4	0.165	UPSTREAM bru-3 INTRON bru-3
3L	13792593	3L_13792593_SNP [dm3] 3L_13799493_SNP [dm6]	C	G	2.737e^-4	0.165	UPSTREAM bru-3 INTRON bru-3
3L	14478487	3L_14478487_SNP [dm3] 3L_14485387_SNP [dm6]	A	C	2.737e^-4	0.165	INTRON bbg
3L	14478577	3L_14478577_SNP [dm3] 3L_14485477_SNP [dm6]	T	C	2.737e^-4	0.165	INTRON bbg
3L	1448887	3L_1448887_SNP [dm3] 3L_1448887_SNP [dm6]	G	A	2.737e^-4	0.165	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc
3L	1592238	3L_1592238_SNP [dm3] 3L_1592238_SNP [dm6]	A	G	2.737e^-4	0.165	INTRON CG13917	TF binding site BDTNP1_TFBS_dl
3L	1595712	3L_1595712_SNP [dm3] 3L_1595712_SNP [dm6]	G	A	2.737e^-4	0.165	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15992198	3L_15992198_SNP [dm3] 3L_15999098_SNP [dm6]	A	G	2.737e^-4	0.165	INTRON CG5830
3L	16189796	3L_16189796_SNP [dm3] 3L_16196696_SNP [dm6]	G	T	2.737e^-4	0.165	INTRON CR45437 EXON CR45437
3L	1682667	3L_1682667_SNP [dm3] 3L_1682667_SNP [dm6]	A	T	2.737e^-4	0.165	INTRON CG7991
3L	16920103	3L_16920103_SNP [dm3] 3L_16927003_SNP [dm6]	A	C	2.737e^-4	0.165	INTRON CG13023
3L	17528059	3L_17528059_SNP [dm3] 3L_17534959_SNP [dm6]	A	T	2.737e^-4	0.165	INTRON Nedd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17615087	3L_17615087_SNP [dm3] 3L_17621987_SNP [dm6]	C	A	2.737e^-4	0.165	UTR_5_PRIME CG7510 UPSTREAM CG6259	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	17943031	3L_17943031_SNP [dm3] 3L_17949931_SNP [dm6]	A	C	2.737e^-4	0.165	INTERGENIC
3L	17965177	3L_17965177_SNP [dm3] 3L_17972077_SNP [dm6]	T	G	2.737e^-4	0.165	UPSTREAM Eip75B INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
3L	18061152	3L_18061152_SNP [dm3] 3L_18068052_SNP [dm6]	G	A	2.737e^-4	0.165	DOWNSTREAM CG44006 INTERGENIC
3L	18151652	3L_18151652_SNP [dm3] 3L_18158552_SNP [dm6]	G	T	2.737e^-4	0.165	NON_SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18157055	3L_18157055_SNP [dm3] 3L_18163955_SNP [dm6]	A	T	2.737e^-4	0.165	INTERGENIC
3L	18159918	3L_18159918_SNP [dm3] 3L_18166818_SNP [dm6]	A	C	2.737e^-4	0.165	DOWNSTREAM W INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18387211	3L_18387211_SNP [dm3] 3L_18394111_SNP [dm6]	A	T	2.737e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18418669	3L_18418669_SNP [dm3] 3L_18425569_SNP [dm6]	A	C	2.737e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18418676	3L_18418676_SNP [dm3] 3L_18425576_SNP [dm6]	A	C	2.737e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1855127	3L_1855127_SNP [dm3] 3L_1855127_SNP [dm6]	C	T	2.737e^-4	0.165	UTR_5_PRIME CG13936
3L	1863447	3L_1863447_SNP [dm3] 3L_1863447_SNP [dm6]	G	A	2.737e^-4	0.165	SYNONYMOUS_CODING HBS1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	1903996	3L_1903996_SNP [dm3] 3L_1903996_SNP [dm6]	T	A	2.737e^-4	0.165	INTRON CG1887
3L	19067824	3L_19067824_SNP [dm3] 3L_19074724_SNP [dm6]	T	C	2.737e^-4	0.165	INTRON Mkp3
3L	2035867	3L_2035867_SNP [dm3] 3L_2035867_SNP [dm6]	T	C	2.737e^-4	0.165	INTERGENIC
3L	20532332	3L_20532332_SNP [dm3] 3L_20539232_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON Rcd2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	23638222	3L_23638222_INS [dm3] 3L_23645122_INS [dm6]	C	CTTATAGGACTATTAGGATT...	2.737e^-4	0.165	INTRON AGO3	TF binding site mE1_TFBS_cad
3L	3317236	3L_3317236_SNP [dm3] 3L_3317236_SNP [dm6]	C	A	2.737e^-4	0.165	DOWNSTREAM PIG-C & 1 other INTERGENIC
3L	3345229	3L_3345229_SNP [dm3] 3L_3345229_SNP [dm6]	A	T	2.737e^-4	0.165	INTRON kst
3L	3580697	3L_3580697_SNP [dm3] 3L_3580697_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON Eip63E
3L	3765938	3L_3765938_SNP [dm3] 3L_3765938_SNP [dm6]	A	G	2.737e^-4	0.165	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3806464	3L_3806464_SNP [dm3] 3L_3806464_SNP [dm6]	C	T	2.737e^-4	0.165	UPSTREAM IntS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4032033	3L_4032033_SNP [dm3] 3L_4032033_SNP [dm6]	C	T	2.737e^-4	0.165	UPSTREAM Gr64d & 1 other DOWNSTREAM Gr64b & 1 other INTERGENIC
3L	4077218	3L_4077218_SNP [dm3] 3L_4077218_SNP [dm6]	G	A	2.737e^-4	0.165	INTRON Gad1
3L	4180834	3L_4180834_SNP [dm3] 3L_4180834_SNP [dm6]	C	A	2.737e^-4	0.165	NON_SYNONYMOUS_CODING Teh2 INTRON CG18675	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4511945	3L_4511945_SNP [dm3] 3L_4511945_SNP [dm6]	T	C	2.737e^-4	0.165	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	454469	3L_454469_SNP [dm3] 3L_454469_SNP [dm6]	A	G	2.737e^-4	0.165	INTRON klar
3L	4548687	3L_4548687_SNP [dm3] 3L_4548687_SNP [dm6]	T	C	2.737e^-4	0.165	INTRON CG11357	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4745400	3L_4745400_SNP [dm3] 3L_4745400_SNP [dm6]	A	G	2.737e^-4	0.165	DOWNSTREAM CR43882 INTRON RhoGEF64C
3L	5099659	3L_5099659_SNP [dm3] 3L_5099659_SNP [dm6]	G	T	2.737e^-4	0.165	EXON CR34047
3L	5236962	3L_5236962_SNP [dm3] 3L_5243862_SNP [dm6]	T	A	2.737e^-4	0.165	INTRON shep
3L	5257306	3L_5257306_SNP [dm3] 3L_5264206_SNP [dm6]	T	A	2.737e^-4	0.165	INTRON shep
3L	5321936	3L_5321936_SNP [dm3] 3L_5328836_SNP [dm6]	C	T	2.737e^-4	0.165	INTERGENIC
3L	5428198	3L_5428198_SNP [dm3] 3L_5435098_SNP [dm6]	G	A	2.737e^-4	0.165	INTRON CG34391
3L	5709798	3L_5709798_SNP [dm3] 3L_5716698_SNP [dm6]	G	A	2.737e^-4	0.165	INTRON sif
3L	5721438	3L_5721438_SNP [dm3] 3L_5728338_SNP [dm6]	G	T	2.737e^-4	0.165	INTRON sif
3L	605973	3L_605973_SNP [dm3] 3L_605973_SNP [dm6]	A	G	2.737e^-4	0.165	INTRON Reg-2	TF binding site BDTNP1_TFBS_dl
3L	6366567	3L_6366567_SNP [dm3] 3L_6373467_SNP [dm6]	A	G	2.737e^-4	0.165	INTERGENIC
3L	6390741	3L_6390741_SNP [dm3] 3L_6397641_SNP [dm6]	C	T	2.737e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	6446828	3L_6446828_SNP [dm3] 3L_6453728_SNP [dm6]	A	T	2.737e^-4	0.165	INTRON CG42747
3L	6861224	3L_6861224_SNP [dm3] 3L_6868124_SNP [dm6]	C	T	2.737e^-4	0.165	INTERGENIC
3L	7987822	3L_7987822_SNP [dm3] 3L_7994722_SNP [dm6]	C	A	2.737e^-4	0.165	INTRON nmo
3L	8089436	3L_8089436_SNP [dm3] 3L_8096336_SNP [dm6]	T	A	2.737e^-4	0.165	UPSTREAM Ect4 INTRON Ect4
3L	8089548	3L_8089548_SNP [dm3] 3L_8096448_SNP [dm6]	A	C	2.737e^-4	0.165	UPSTREAM Ect4 INTRON Ect4
3L	8762688	3L_8762688_SNP [dm3] 3L_8769588_SNP [dm6]	A	G	2.737e^-4	0.165	INTRON Fhos
3L	8998540	3L_8998540_SNP [dm3] 3L_9005440_SNP [dm6]	G	A	2.737e^-4	0.165	INTRON Doc3	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9672940	3L_9672940_SNP [dm3] 3L_9679840_SNP [dm6]	G	A	2.737e^-4	0.165	UPSTREAM fry INTRON CG16717	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_Ubx
3L	969766	3L_969766_SNP [dm3] 3L_969766_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON Glut1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	981734	3L_981734_SNP [dm3] 3L_981734_SNP [dm6]	T	C	2.737e^-4	0.165	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1	TF binding site mE1_TFBS_chinmo
3R	11233159	3R_11233159_SNP [dm3] 3R_15407437_SNP [dm6]	G	A	2.737e^-4	0.165	UPSTREAM CG6125 & 1 other INTERGENIC
3R	11574290	3R_11574290_SNP [dm3] 3R_15748568_SNP [dm6]	C	T	2.737e^-4	0.165	INTERGENIC
3R	12798903	3R_12798903_SNP [dm3] 3R_16973181_SNP [dm6]	T	A	2.737e^-4	0.165	UPSTREAM Abd-B INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	13203026	3R_13203026_SNP [dm3] 3R_17377304_SNP [dm6]	A	C	2.737e^-4	0.165	INTRON Brf	TF binding site mE1_TFBS_Trl
3R	15135953	3R_15135953_SNP [dm3] 3R_19310231_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16659075	3R_16659075_SNP [dm3] 3R_20833353_SNP [dm6]	A	G	2.737e^-4	0.165	DOWNSTREAM CG31223 INTRON Synd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	16779499	3R_16779499_SNP [dm3] 3R_20953777_SNP [dm6]	G	C	2.737e^-4	0.165	INTRON Atpalpha
3R	16806743	3R_16806743_SNP [dm3] 3R_20981021_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON Calx
3R	17265078	3R_17265078_SNP [dm3] 3R_21439356_SNP [dm6]	A	T	2.737e^-4	0.165	INTERGENIC
3R	17976201	3R_17976201_INS [dm3] 3R_22150479_INS [dm6]	C	CAC	2.737e^-4	0.165	INTRON SKIP	TF binding site mE1_TFBS_cnc
3R	18074445	3R_18074445_SNP [dm3] 3R_22248723_SNP [dm6]	A	T	2.737e^-4	0.165	INTRON SKIP
3R	19413564	3R_19413564_SNP [dm3] 3R_23587842_SNP [dm6]	C	T	2.737e^-4	0.165	SYNONYMOUS_CODING CG10182
3R	19763641	3R_19763641_SNP [dm3] 3R_23937919_SNP [dm6]	T	A	2.737e^-4	0.165	NON_SYNONYMOUS_CODING Gdh	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19784428	3R_19784428_SNP [dm3] 3R_23958706_SNP [dm6]	G	A	2.737e^-4	0.165	UTR_5_PRIME AP-1sigma UPSTREAM Aats-glupro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	19862481	3R_19862481_SNP [dm3] 3R_24036759_SNP [dm6]	C	T	2.737e^-4	0.165	SYNONYMOUS_CODING Miro	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	20130014	3R_20130014_SNP [dm3] 3R_24304292_SNP [dm6]	G	A	2.737e^-4	0.165	INTRON crb
3R	20414107	3R_20414107_SNP [dm3] 3R_24588385_SNP [dm6]	A	C	2.737e^-4	0.165	UPSTREAM mld INTRON mld	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	21244738	3R_21244738_SNP [dm3] 3R_25419016_SNP [dm6]	T	G	2.737e^-4	0.165	INTRON Fur1
3R	21244785	3R_21244785_SNP [dm3] 3R_25419063_SNP [dm6]	A	C	2.737e^-4	0.165	INTRON Fur1	TF binding site mE1_TFBS_bab1
3R	21321036	3R_21321036_SNP [dm3] 3R_25495314_SNP [dm6]	C	G	2.737e^-4	0.165	UPSTREAM CG33494 DOWNSTREAM CR44948 INTERGENIC	transposable element FlyBase
3R	21321674	3R_21321674_SNP [dm3] 3R_25495952_SNP [dm6]	G	A	2.737e^-4	0.165	UPSTREAM CG33494 DOWNSTREAM CR44948 INTERGENIC
3R	23455460	3R_23455460_SNP [dm3] 3R_27629738_SNP [dm6]	C	T	2.737e^-4	0.165	SYNONYMOUS_CODING Tusp	TF binding site mE1_TFBS_chinmo
3R	25277116	3R_25277116_SNP [dm3] 3R_29451394_SNP [dm6]	A	T	2.737e^-4	0.165	INTRON Ptp99A
3R	25848227	3R_25848227_SNP [dm3] 3R_30022505_SNP [dm6]	C	A	2.737e^-4	0.165	NON_SYNONYMOUS_CODING RpS28a UPSTREAM Axn & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26453156	3R_26453156_SNP [dm3] 3R_30627434_SNP [dm6]	T	C	2.737e^-4	0.165	UTR_3_PRIME CG2267
X	12290439	X_12290439_SNP [dm3] X_12396406_SNP [dm6]	G	A	2.737e^-4	0.165	INTERGENIC
X	12352111	X_12352111_SNP [dm3] X_12458078_SNP [dm6]	T	A	2.737e^-4	0.165	UPSTREAM CG15731 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	13641976	X_13641976_SNP [dm3] X_13747943_SNP [dm6]	A	G	2.737e^-4	0.165	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	14151871	X_14151871_SNP [dm3] X_14257838_SNP [dm6]	G	A	2.737e^-4	0.165	NON_SYNONYMOUS_CODING mud UTR_3_PRIME mud INTRON mud	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14160222	X_14160222_SNP [dm3] X_14266189_SNP [dm6]	A	T	2.737e^-4	0.165	UTR_5_PRIME CG13404 UPSTREAM na DOWNSTREAM CG1461	TF binding site mE1_TFBS_chinmo
X	14164003	X_14164003_SNP [dm3] X_14269970_SNP [dm6]	C	T	2.737e^-4	0.165	SYNONYMOUS_CODING na	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14165648	X_14165648_SNP [dm3] X_14271615_SNP [dm6]	C	T	2.737e^-4	0.165	SYNONYMOUS_CODING na	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14183552	X_14183552_SNP [dm3] X_14289519_SNP [dm6]	T	A	2.737e^-4	0.165	UPSTREAM CG9400 INTERGENIC	TF binding site mE1_TFBS_HSA
X	14363084	X_14363084_SNP [dm3] X_14469051_SNP [dm6]	A	G	2.737e^-4	0.165	INTERGENIC
X	14412371	X_14412371_SNP [dm3] X_14518338_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON CR44110
X	14501884	X_14501884_SNP [dm3] X_14607851_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON NetA	TF binding site BDTNP1_TFBS_twi
X	14690750	X_14690750_SNP [dm3] X_14796717_SNP [dm6]	A	G	2.737e^-4	0.165	INTRON rut
X	14707155	X_14707155_SNP [dm3] X_14813122_SNP [dm6]	T	A	2.737e^-4	0.165	INTRON rut
X	14844869	X_14844869_SNP [dm3] X_14950836_SNP [dm6]	G	T	2.737e^-4	0.165	UTR_5_PRIME pdgy UPSTREAM pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	15164975	X_15164975_SNP [dm3] X_15270942_SNP [dm6]	G	A	2.737e^-4	0.165	DOWNSTREAM CG9106 INTERGENIC
X	16030695	X_16030695_INS [dm3] X_16136662_INS [dm6]	T	TTGCTTCGAAAT...	2.737e^-4	0.165	INTRON disco-r
X	16428036	X_16428036_SNP [dm3] X_16534003_SNP [dm6]	G	A	2.737e^-4	0.165	UPSTREAM para INTERGENIC
X	16579631	X_16579631_SNP [dm3] X_16685598_SNP [dm6]	T	C	2.737e^-4	0.165	SYNONYMOUS_CODING Sep4
X	17128438	X_17128438_SNP [dm3] X_17234405_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON f	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	17170022	X_17170022_SNP [dm3] X_17275989_SNP [dm6]	T	A	2.737e^-4	0.165	INTRON f
X	17170026	X_17170026_INS [dm3] X_17275993_INS [dm6]	T	TTTTTT	2.737e^-4	0.165	INTRON f
X	17170028	X_17170028_SNP [dm3] X_17275995_SNP [dm6]	A	T	2.737e^-4	0.165	INTRON f
X	17170030	X_17170030_SNP [dm3] X_17275997_SNP [dm6]	A	C	2.737e^-4	0.165	INTRON f
X	17249513	X_17249513_SNP [dm3] X_17355480_SNP [dm6]	G	A	2.737e^-4	0.165	INTERGENIC
X	17658652	X_17658652_SNP [dm3] X_17764619_SNP [dm6]	G	T	2.737e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17681193	X_17681193_SNP [dm3] X_17787160_SNP [dm6]	G	A	2.737e^-4	0.165	INTERGENIC
X	18165650	X_18165650_DEL [dm3] X_18271617_DEL [dm6]	CC	C	2.737e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18929892	X_18929892_SNP [dm3] X_19035859_SNP [dm6]	C	G	2.737e^-4	0.165	INTERGENIC
X	1972008	X_1972008_SNP [dm3] X_2077975_SNP [dm6]	G	A	2.737e^-4	0.165	NON_SYNONYMOUS_CODING CG4025 DOWNSTREAM CG16903	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	1977392	X_1977392_SNP [dm3] X_2083359_SNP [dm6]	G	C	2.737e^-4	0.165	INTRON Unc-76	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19981716	X_19981716_SNP [dm3] X_20087683_SNP [dm6]	C	G	2.737e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19996585	X_19996585_SNP [dm3] X_20102552_SNP [dm6]	A	T	2.737e^-4	0.165	INTERGENIC	transposable element FlyBase
X	20434955	X_20434955_SNP [dm3] X_20563928_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON RunxB
X	20436176	X_20436176_SNP [dm3] X_20565149_SNP [dm6]	A	T	2.737e^-4	0.165	SYNONYMOUS_CODING RunxB	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	20436209	X_20436209_SNP [dm3] X_20565182_SNP [dm6]	T	C	2.737e^-4	0.165	SYNONYMOUS_CODING RunxB	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	20889806	X_20889806_SNP [dm3] X_21018779_SNP [dm6]	T	C	2.737e^-4	0.165	INTERGENIC
X	20889807	X_20889807_SNP [dm3] X_21018780_SNP [dm6]	A	T	2.737e^-4	0.165	INTERGENIC
X	21375713	X_21375713_SNP [dm3] X_21504686_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON CR45082
X	21880460	X_21880460_SNP [dm3] X_22478624_SNP [dm6]	T	G	2.737e^-4	0.165	INTRON CG12576
X	22015697	X_22015697_SNP [dm3] X_22613861_SNP [dm6]	A	T	2.737e^-4	0.165	INTRON Cda4
X	22272956	X_22272956_SNP [dm3] X_22871120_SNP [dm6]	T	C	2.737e^-4	0.165	INTRON CG42346 EXON CR43656
X	22274261	X_22274261_SNP [dm3] X_22872425_SNP [dm6]	G	T	2.737e^-4	0.165	UPSTREAM CG34334 & 1 other INTRON CG42346	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA transposable element FlyBase
X	2408202	X_2408202_SNP [dm3] X_2514169_SNP [dm6]	A	G	2.737e^-4	0.165	INTRON trol
X	3520598	X_3520598_SNP [dm3] X_3626565_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON AstA-R1
X	3764280	X_3764280_SNP [dm3] X_3870247_SNP [dm6]	T	A	2.737e^-4	0.165	INTRON yin & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv
X	4029500	X_4029500_SNP [dm3] X_4135467_SNP [dm6]	T	C	2.737e^-4	0.165	SYNONYMOUS_CODING Fas2 DOWNSTREAM Fas2 INTRON Fas2
X	5001224	X_5001224_SNP [dm3] X_5107191_SNP [dm6]	G	A	2.737e^-4	0.165	INTRON rg & 1 other
X	5020991	X_5020991_SNP [dm3] X_5126958_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON rg & 1 other
X	5592275	X_5592275_SNP [dm3] X_5698242_SNP [dm6]	T	C	2.737e^-4	0.165	UPSTREAM CG4096 DOWNSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	604932	X_604932_SNP [dm3] X_710899_SNP [dm6]	T	G	2.737e^-4	0.165	INTRON sdk	transposable element FlyBase
X	608990	X_608990_SNP [dm3] X_714957_SNP [dm6]	G	A	2.737e^-4	0.165	INTRON sdk
X	6503450	X_6503450_SNP [dm3] X_6609417_SNP [dm6]	C	T	2.737e^-4	0.165	INTRON pigs
X	6557335	X_6557335_SNP [dm3] X_6663302_SNP [dm6]	A	G	2.737e^-4	0.165	INTRON Ctr1A	TF binding site BDTNP1_TFBS_dl
X	6823994	X_6823994_SNP [dm3] X_6929961_SNP [dm6]	G	C	2.737e^-4	0.165	INTRON CG14431
X	6952325	X_6952325_SNP [dm3] X_7058292_SNP [dm6]	T	G	2.737e^-4	0.165	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	7435645	X_7435645_INS [dm3] X_7541612_INS [dm6]	A	ATA	2.737e^-4	0.165	INTRON CG32719
X	7484500	X_7484500_SNP [dm3] X_7590467_SNP [dm6]	G	C	2.737e^-4	0.165	INTERGENIC	regulatory region REDfly_CRMs
X	7874011	X_7874011_SNP [dm3] X_7979978_SNP [dm6]	T	C	2.737e^-4	0.165	INTRON sn
X	8397123	X_8397123_SNP [dm3] X_8503090_SNP [dm6]	C	A	2.737e^-4	0.165	INTRON CG33181
X	8398991	X_8398991_SNP [dm3] X_8504958_SNP [dm6]	A	T	2.737e^-4	0.165	INTRON CG33181
2L	10329370	2L_10329370_SNP [dm3] 2L_10329370_SNP [dm6]	T	C	3.277e^-4	0.165	SYNONYMOUS_CODING CG5375
2L	10723745	2L_10723745_SNP [dm3] 2L_10723745_SNP [dm6]	T	C	3.277e^-4	0.165	UPSTREAM CG6431 INTERGENIC
2L	11868351	2L_11868351_SNP [dm3] 2L_11868351_SNP [dm6]	A	T	3.277e^-4	0.165	INTRON Pde1c
2L	12971440	2L_12971440_SNP [dm3] 2L_12971440_SNP [dm6]	T	A	3.277e^-4	0.165	INTERGENIC
2L	1435199	2L_1435199_SNP [dm3] 2L_1435199_SNP [dm6]	A	G	3.277e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3180534	2L_3180534_SNP [dm3] 2L_3180534_SNP [dm6]	A	G	3.277e^-4	0.165	INTRON CG34393
2L	3401334	2L_3401334_SNP [dm3] 2L_3401334_SNP [dm6]	C	A	3.277e^-4	0.165	INTERGENIC
2L	4650920	2L_4650920_SNP [dm3] 2L_4650920_SNP [dm6]	G	A	3.277e^-4	0.165	UPSTREAM CG3355 INTERGENIC
2R	12256785	2R_12256785_SNP [dm3] 2R_16369280_SNP [dm6]	A	T	3.277e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12808524	2R_12808524_SNP [dm3] 2R_16921019_SNP [dm6]	T	G	3.277e^-4	0.165	INTERGENIC
2R	15470580	2R_15470580_SNP [dm3] 2R_19583075_SNP [dm6]	A	G	3.277e^-4	0.165	INTRON sm
3L	10840175	3L_10840175_SNP [dm3] 3L_10847075_SNP [dm6]	C	A	3.277e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	11875399	3L_11875399_SNP [dm3] 3L_11882299_SNP [dm6]	C	T	3.277e^-4	0.165	SYNONYMOUS_CODING CCDC151 INTRON CG44837
3L	5289545	3L_5289545_SNP [dm3] 3L_5296445_SNP [dm6]	C	T	3.277e^-4	0.165	INTERGENIC
3R	16337274	3R_16337274_SNP [dm3] 3R_20511552_SNP [dm6]	G	A	3.277e^-4	0.165	INTRON CG4288
X	12957599	X_12957599_SNP [dm3] X_13063566_SNP [dm6]	A	G	3.277e^-4	0.165	INTRON rad
X	1336774	X_1336774_SNP [dm3] X_1442741_SNP [dm6]	T	A	3.277e^-4	0.165	SYNONYMOUS_CODING futsch
X	19252649	X_19252649_SNP [dm3] X_19358616_SNP [dm6]	T	A	3.277e^-4	0.165	INTRON kek5	TF binding site BDTNP1_TFBS_dl
X	4859003	X_4859003_SNP [dm3] X_4964970_SNP [dm6]	C	G	3.277e^-4	0.165	INTRON CR44833
2L	1662057	2L_1662057_SNP [dm3] 2L_1662057_SNP [dm6]	G	T	7.458e^-4	0.165	INTRON chinmo	TF binding site BDTNP1_TFBS_twi
2L	18597781	2L_18597781_SNP [dm3] 2L_18597781_SNP [dm6]	G	C	7.458e^-4	0.165	UPSTREAM amos INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2254750	2L_2254750_SNP [dm3] 2L_2254750_SNP [dm6]	T	G	7.458e^-4	0.165	SYNONYMOUS_CODING Send1 DOWNSTREAM CG17234
2L	2695366	2L_2695366_SNP [dm3] 2L_2695366_SNP [dm6]	G	C	7.458e^-4	0.165	UTR_3_PRIME CG15398 INTRON CG31690
2L	2878522	2L_2878522_SNP [dm3] 2L_2878522_SNP [dm6]	C	A	7.458e^-4	0.165	UTR_5_PRIME CG31950 UPSTREAM betaggt-II & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	2922843	2L_2922843_DEL [dm3] 2L_2922843_DEL [dm6]	TTGAT	T	7.458e^-4	0.165	INTRON lilli
2L	3072129	2L_3072129_SNP [dm3] 2L_3072129_SNP [dm6]	A	T	7.458e^-4	0.165	INTRON toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3088992	2L_3088992_SNP [dm3] 2L_3088992_SNP [dm6]	G	T	7.458e^-4	0.165	INTRON toc	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA
2L	3137556	2L_3137556_SNP [dm3] 2L_3137556_SNP [dm6]	T	C	7.458e^-4	0.165	INTRON toc
2R	18100738	2R_18100738_SNP [dm3] 2R_22213233_SNP [dm6]	T	A	7.458e^-4	0.165	UTR_5_PRIME ari-2 DOWNSTREAM CG11291	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8939256	2R_8939256_INS [dm3] 2R_13051751_INS [dm6]	G	GCAATTGCTAATGAATTCTC...	7.458e^-4	0.165	INTERGENIC
3L	12908703	3L_12908703_DEL [dm3] 3L_12915603_DEL [dm6]	TTC	T	7.458e^-4	0.165	INTERGENIC
3L	17878685	3L_17878685_SNP [dm3] 3L_17885585_SNP [dm6]	A	C	7.458e^-4	0.165	UPSTREAM CR42548 DOWNSTREAM CG16775 INTERGENIC	transposable element FlyBase
3L	19872325	3L_19872325_SNP [dm3] 3L_19879225_SNP [dm6]	C	T	7.458e^-4	0.165	SYNONYMOUS_CODING CG8334	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3219797	3L_3219797_SNP [dm3] 3L_3219797_SNP [dm6]	G	A	7.458e^-4	0.165	SYNONYMOUS_CODING CG12034 UPSTREAM CG14967	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	900809	3L_900809_DEL [dm3] 3L_900809_DEL [dm6]	GAAATG	G	7.458e^-4	0.165	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	1739096	3R_1739096_SNP [dm3] 3R_5913374_SNP [dm6]	C	T	7.458e^-4	0.165	INTRON CG34113
3R	20375688	3R_20375688_SNP [dm3] 3R_24549966_SNP [dm6]	C	A	7.458e^-4	0.165	INTRON Esyt2
X	22179099	X_22179099_INS [dm3] X_22777263_INS [dm6]	T	TGCGAAAAAT	7.458e^-4	0.165	INTRON CR44997
X	4874945	X_4874945_SNP [dm3] X_4980912_SNP [dm6]	T	C	7.458e^-4	0.165	INTRON CR44833	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10016730	2L_10016730_SNP [dm3] 2L_10016730_SNP [dm6]	A	G	9.262e^-4	0.165	NON_SYNONYMOUS_CODING CG13131
2L	10018496	2L_10018496_SNP [dm3] 2L_10018496_SNP [dm6]	C	A	9.262e^-4	0.165	INTERGENIC
2L	10031730	2L_10031730_DEL [dm3] 2L_10031730_DEL [dm6]	AC	A	9.262e^-4	0.165	UPSTREAM obst-B INTERGENIC
2L	10046484	2L_10046484_INS [dm3] 2L_10046484_INS [dm6]	C	CGAC	9.262e^-4	0.165	INTERGENIC
2L	10047461	2L_10047461_SNP [dm3] 2L_10047461_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	10066738	2L_10066738_SNP [dm3] 2L_10066738_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON CG44153
2L	10069538	2L_10069538_SNP [dm3] 2L_10069538_SNP [dm6]	T	C	9.262e^-4	0.165	SYNONYMOUS_CODING CG44153	TF binding site BDTNP1_TFBS_sna
2L	10069994	2L_10069994_SNP [dm3] 2L_10069994_SNP [dm6]	C	A	9.262e^-4	0.165	INTRON CG44153
2L	10082383	2L_10082383_SNP [dm3] 2L_10082383_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON CG44153
2L	10087176	2L_10087176_SNP [dm3] 2L_10087176_SNP [dm6]	G	C	9.262e^-4	0.165	INTRON CG44153	TF binding site mE1_TFBS_chinmo
2L	10092884	2L_10092884_INS [dm3] 2L_10092884_INS [dm6]	A	AAA	9.262e^-4	0.165	UPSTREAM CG13133 INTRON CG44153
2L	10098865	2L_10098865_SNP [dm3] 2L_10098865_SNP [dm6]	A	T	9.262e^-4	0.165	INTRON CG34109 & 1 other
2L	10104073	2L_10104073_SNP [dm3] 2L_10104073_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON CG44153 & 1 other
2L	10111733	2L_10111733_SNP [dm3] 2L_10111733_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON CG44153 & 1 other
2L	10112788	2L_10112788_SNP [dm3] 2L_10112788_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON CG44153 & 1 other
2L	10113178	2L_10113178_SNP [dm3] 2L_10113178_SNP [dm6]	T	A	9.262e^-4	0.165	INTRON CG44153 & 1 other
2L	10125950	2L_10125950_INS [dm3] 2L_10125950_INS [dm6]	T	TCACAATTATCTACGCTAAG...	9.262e^-4	0.165	DOWNSTREAM CG34109 INTRON CG44153
2L	10145962	2L_10145962_SNP [dm3] 2L_10145962_SNP [dm6]	A	G	9.262e^-4	0.165	UTR_5_PRIME CG4839 INTRON CG44153 & 1 other
2L	10146065	2L_10146065_SNP [dm3] 2L_10146065_SNP [dm6]	G	A	9.262e^-4	0.165	UTR_5_PRIME CG4839 INTRON CG44153 & 1 other
2L	10147594	2L_10147594_SNP [dm3] 2L_10147594_SNP [dm6]	C	G	9.262e^-4	0.165	INTRON CG44153 & 1 other	TF binding site mE1_TFBS_cad
2L	10148908	2L_10148908_SNP [dm3] 2L_10148908_SNP [dm6]	G	T	9.262e^-4	0.165	INTRON CG44153 & 1 other
2L	10151984	2L_10151984_SNP [dm3] 2L_10151984_SNP [dm6]	T	A	9.262e^-4	0.165	INTRON CG44153 & 1 other
2L	10152037	2L_10152037_SNP [dm3] 2L_10152037_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON CG44153 & 1 other
2L	10152045	2L_10152045_SNP [dm3] 2L_10152045_SNP [dm6]	A	C	9.262e^-4	0.165	INTRON CG44153 & 1 other
2L	10152050	2L_10152050_SNP [dm3] 2L_10152050_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON CG44153 & 1 other
2L	1015212	2L_1015212_SNP [dm3] 2L_1015212_SNP [dm6]	C	T	9.262e^-4	0.165	SYNONYMOUS_CODING IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10171833	2L_10171833_SNP [dm3] 2L_10171833_SNP [dm6]	G	A	9.262e^-4	0.165	UPSTREAM CG13137 INTRON CG44153
2L	10178239	2L_10178239_SNP [dm3] 2L_10178239_SNP [dm6]	G	A	9.262e^-4	0.165	UTR_5_PRIME CG44153
2L	1020673	2L_1020673_SNP [dm3] 2L_1020673_SNP [dm6]	A	T	9.262e^-4	0.165	INTRON IA-2
2L	1022303	2L_1022303_SNP [dm3] 2L_1022303_SNP [dm6]	G	C	9.262e^-4	0.165	INTRON IA-2
2L	1022382	2L_1022382_SNP [dm3] 2L_1022382_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON IA-2
2L	102319	2L_102319_SNP [dm3] 2L_102319_SNP [dm6]	C	A	9.262e^-4	0.165	UPSTREAM CG11377 DOWNSTREAM Zir INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	10256962	2L_10256962_SNP [dm3] 2L_10256962_SNP [dm6]	T	G	9.262e^-4	0.165	UTR_3_PRIME Pten INTRON Pten
2L	10285368	2L_10285368_SNP [dm3] 2L_10285368_SNP [dm6]	G	A	9.262e^-4	0.165	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10285620	2L_10285620_SNP [dm3] 2L_10285620_SNP [dm6]	G	A	9.262e^-4	0.165	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1029290	2L_1029290_SNP [dm3] 2L_1029290_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON IA-2
2L	1029311	2L_1029311_SNP [dm3] 2L_1029311_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON IA-2
2L	1029693	2L_1029693_SNP [dm3] 2L_1029693_SNP [dm6]	A	C	9.262e^-4	0.165	INTRON IA-2
2L	10319355	2L_10319355_SNP [dm3] 2L_10319355_SNP [dm6]	A	G	9.262e^-4	0.165	SYNONYMOUS_CODING CG5381
2L	10319361	2L_10319361_SNP [dm3] 2L_10319361_SNP [dm6]	A	C	9.262e^-4	0.165	SYNONYMOUS_CODING CG5381
2L	10323015	2L_10323015_SNP [dm3] 2L_10323015_SNP [dm6]	A	G	9.262e^-4	0.165	UTR_5_PRIME CG5381 UPSTREAM CG4995 INTRON CG4995
2L	10323020	2L_10323020_SNP [dm3] 2L_10323020_SNP [dm6]	C	G	9.262e^-4	0.165	START_GAINED CG5381 UTR_5_PRIME CG5381 UPSTREAM CG4995 INTRON CG4995
2L	10343004	2L_10343004_SNP [dm3] 2L_10343004_SNP [dm6]	A	G	9.262e^-4	0.165	SYNONYMOUS_CODING Sps2 DOWNSTREAM CG31715	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	10343133	2L_10343133_SNP [dm3] 2L_10343133_SNP [dm6]	G	C	9.262e^-4	0.165	SYNONYMOUS_CODING Sps2 DOWNSTREAM CG31715	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	10343163	2L_10343163_SNP [dm3] 2L_10343163_SNP [dm6]	C	T	9.262e^-4	0.165	SYNONYMOUS_CODING Sps2 DOWNSTREAM CG31715	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	10343298	2L_10343298_SNP [dm3] 2L_10343298_SNP [dm6]	G	A	9.262e^-4	0.165	SYNONYMOUS_CODING Sps2 DOWNSTREAM CG31715	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	10343331	2L_10343331_SNP [dm3] 2L_10343331_SNP [dm6]	C	T	9.262e^-4	0.165	SYNONYMOUS_CODING Sps2 DOWNSTREAM CG31715	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	10343341	2L_10343341_SNP [dm3] 2L_10343341_SNP [dm6]	G	A	9.262e^-4	0.165	NON_SYNONYMOUS_CODING Sps2 DOWNSTREAM CG31715	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	10346413	2L_10346413_SNP [dm3] 2L_10346413_SNP [dm6]	T	A	9.262e^-4	0.165	INTRON CG5022
2L	10346414	2L_10346414_SNP [dm3] 2L_10346414_SNP [dm6]	A	T	9.262e^-4	0.165	INTRON CG5022
2L	10348628	2L_10348628_SNP [dm3] 2L_10348628_SNP [dm6]	C	A	9.262e^-4	0.165	DOWNSTREAM CG5022 INTRON CG34367
2L	10378791	2L_10378791_SNP [dm3] 2L_10378791_SNP [dm6]	C	T	9.262e^-4	0.165	SYNONYMOUS_CODING dpr19
2L	10380475	2L_10380475_SNP [dm3] 2L_10380475_SNP [dm6]	C	T	9.262e^-4	0.165	SYNONYMOUS_CODING gny DOWNSTREAM dpr19	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	10556988	2L_10556988_DEL [dm3] 2L_10556988_DEL [dm6]	TT	T	9.262e^-4	0.165	INTRON Trim9	TF binding site mE1_TFBS_inv
2L	10556993	2L_10556993_SNP [dm3] 2L_10556993_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON Trim9	TF binding site mE1_TFBS_inv
2L	10558632	2L_10558632_SNP [dm3] 2L_10558632_SNP [dm6]	G	T	9.262e^-4	0.165	INTRON Trim9	TF binding site mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	10609979	2L_10609979_SNP [dm3] 2L_10609979_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10620388	2L_10620388_SNP [dm3] 2L_10620388_SNP [dm6]	C	T	9.262e^-4	0.165	SYNONYMOUS_CODING Trim9
2L	10645145	2L_10645145_SNP [dm3] 2L_10645145_SNP [dm6]	C	A	9.262e^-4	0.165	INTRON CG18284
2L	10669154	2L_10669154_SNP [dm3] 2L_10669154_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON CG31871
2L	10671832	2L_10671832_SNP [dm3] 2L_10671832_SNP [dm6]	T	A	9.262e^-4	0.165	DOWNSTREAM CG31871 INTERGENIC
2L	10694537	2L_10694537_SNP [dm3] 2L_10694537_SNP [dm6]	C	G	9.262e^-4	0.165	UPSTREAM CR44181 & 1 other DOWNSTREAM CG7300 INTERGENIC
2L	10710586	2L_10710586_SNP [dm3] 2L_10710586_SNP [dm6]	G	A	9.262e^-4	0.165	EXON CR44407
2L	10710705	2L_10710705_SNP [dm3] 2L_10710705_SNP [dm6]	T	G	9.262e^-4	0.165	EXON CR44407
2L	10714460	2L_10714460_SNP [dm3] 2L_10714460_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	10714482	2L_10714482_SNP [dm3] 2L_10714482_SNP [dm6]	G	T	9.262e^-4	0.165	INTERGENIC
2L	10714489	2L_10714489_SNP [dm3] 2L_10714489_SNP [dm6]	C	G	9.262e^-4	0.165	INTERGENIC
2L	10720419	2L_10720419_SNP [dm3] 2L_10720419_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	10734889	2L_10734889_SNP [dm3] 2L_10734889_SNP [dm6]	A	C	9.262e^-4	0.165	NON_SYNONYMOUS_CODING Nup107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10736145	2L_10736145_SNP [dm3] 2L_10736145_SNP [dm6]	A	C	9.262e^-4	0.165	UPSTREAM Nup107 DOWNSTREAM Vha16-5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	10736475	2L_10736475_SNP [dm3] 2L_10736475_SNP [dm6]	G	A	9.262e^-4	0.165	SYNONYMOUS_CODING Vha16-5 UPSTREAM Nup107 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	10742298	2L_10742298_SNP [dm3] 2L_10742298_SNP [dm6]	G	A	9.262e^-4	0.165	SYNONYMOUS_CODING CG6729 DOWNSTREAM mir-4970	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10744232	2L_10744232_SNP [dm3] 2L_10744232_SNP [dm6]	G	A	9.262e^-4	0.165	UTR_3_PRIME CG17124 UPSTREAM CG6729 DOWNSTREAM CG17124	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10746679	2L_10746679_SNP [dm3] 2L_10746679_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON CG17124	TF binding site BDTNP1_TFBS_twi
2L	10746810	2L_10746810_SNP [dm3] 2L_10746810_SNP [dm6]	C	G	9.262e^-4	0.165	INTRON CG17124	TF binding site BDTNP1_TFBS_twi
2L	10753743	2L_10753743_SNP [dm3] 2L_10753743_SNP [dm6]	C	T	9.262e^-4	0.165	UTR_5_PRIME CG17124 INTRON CG17124
2L	10758741	2L_10758741_SNP [dm3] 2L_10758741_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	10772417	2L_10772417_SNP [dm3] 2L_10772417_SNP [dm6]	G	A	9.262e^-4	0.165	UTR_3_PRIME CG31869
2L	10772537	2L_10772537_SNP [dm3] 2L_10772537_SNP [dm6]	C	T	9.262e^-4	0.165	UTR_3_PRIME CG31869
2L	10779236	2L_10779236_SNP [dm3] 2L_10779236_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON CG31869
2L	10793873	2L_10793873_INS [dm3] 2L_10793873_INS [dm6]	A	ATA	9.262e^-4	0.165	INTRON CG31869
2L	10798678	2L_10798678_DEL [dm3] 2L_10798678_DEL [dm6]	TT	T	9.262e^-4	0.165	INTRON CG31869
2L	10862074	2L_10862074_SNP [dm3] 2L_10862074_SNP [dm6]	T	A	9.262e^-4	0.165	DOWNSTREAM CR43807 & 1 other INTERGENIC
2L	10889988	2L_10889988_SNP [dm3] 2L_10889988_SNP [dm6]	G	A	9.262e^-4	0.165	INTERGENIC
2L	10912406	2L_10912406_SNP [dm3] 2L_10912406_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC
2L	10932164	2L_10932164_SNP [dm3] 2L_10932164_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON dpr2
2L	1094471	2L_1094471_SNP [dm3] 2L_1094471_SNP [dm6]	T	G	9.262e^-4	0.165	INTRON CG4629
2L	10957368	2L_10957368_SNP [dm3] 2L_10957368_SNP [dm6]	G	C	9.262e^-4	0.165	INTRON dpr2
2L	10957381	2L_10957381_SNP [dm3] 2L_10957381_SNP [dm6]	C	A	9.262e^-4	0.165	INTRON dpr2
2L	10964543	2L_10964543_SNP [dm3] 2L_10964543_SNP [dm6]	A	T	9.262e^-4	0.165	UPSTREAM dpr2 DOWNSTREAM CG33129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
2L	10988651	2L_10988651_SNP [dm3] 2L_10988651_SNP [dm6]	C	T	9.262e^-4	0.165	SYNONYMOUS_CODING CG12253 UPSTREAM CG16833	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10989291	2L_10989291_SNP [dm3] 2L_10989291_SNP [dm6]	G	C	9.262e^-4	0.165	UPSTREAM CG16833 DOWNSTREAM CG12253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10991686	2L_10991686_SNP [dm3] 2L_10991686_SNP [dm6]	G	A	9.262e^-4	0.165	SYNONYMOUS_CODING CG16833
2L	11018833	2L_11018833_SNP [dm3] 2L_11018833_SNP [dm6]	A	C	9.262e^-4	0.165	DOWNSTREAM CG14913 INTRON Samuel
2L	11112513	2L_11112513_SNP [dm3] 2L_11112513_SNP [dm6]	G	A	9.262e^-4	0.165	NON_SYNONYMOUS_CODING CG6201	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11114872	2L_11114872_SNP [dm3] 2L_11114872_SNP [dm6]	A	G	9.262e^-4	0.165	SYNONYMOUS_CODING Gr32a DOWNSTREAM CG6230	TF binding site mE1_TFBS_cad
2L	11114881	2L_11114881_SNP [dm3] 2L_11114881_SNP [dm6]	A	G	9.262e^-4	0.165	SYNONYMOUS_CODING Gr32a DOWNSTREAM CG6230	TF binding site mE1_TFBS_cad
2L	11114941	2L_11114941_SNP [dm3] 2L_11114941_SNP [dm6]	A	G	9.262e^-4	0.165	SYNONYMOUS_CODING Gr32a DOWNSTREAM CG6230	TF binding site mE1_TFBS_cad
2L	1111679	2L_1111679_SNP [dm3] 2L_1111679_SNP [dm6]	A	G	9.262e^-4	0.165	SYNONYMOUS_CODING CG14339	TF binding site mE1_TFBS_chinmo
2L	1114014	2L_1114014_SNP [dm3] 2L_1114014_SNP [dm6]	G	T	9.262e^-4	0.165	UTR_3_PRIME CG14340 DOWNSTREAM Pino
2L	11150564	2L_11150564_SNP [dm3] 2L_11150564_SNP [dm6]	A	G	9.262e^-4	0.165	DOWNSTREAM CG6287 INTERGENIC	TF binding site mE1_TFBS_kn
2L	11155999	2L_11155999_SNP [dm3] 2L_11155999_SNP [dm6]	G	A	9.262e^-4	0.165	UPSTREAM CG6287 DOWNSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_Trl
2L	11156107	2L_11156107_SNP [dm3] 2L_11156107_SNP [dm6]	C	G	9.262e^-4	0.165	UPSTREAM CG6287 DOWNSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_Trl
2L	11168134	2L_11168134_SNP [dm3] 2L_11168134_SNP [dm6]	T	G	9.262e^-4	0.165	UPSTREAM Ca-beta INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11168167	2L_11168167_SNP [dm3] 2L_11168167_SNP [dm6]	G	A	9.262e^-4	0.165	UPSTREAM Ca-beta INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11168466	2L_11168466_SNP [dm3] 2L_11168466_SNP [dm6]	C	T	9.262e^-4	0.165	UPSTREAM Ca-beta INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11168676	2L_11168676_SNP [dm3] 2L_11168676_SNP [dm6]	T	C	9.262e^-4	0.165	UPSTREAM Ca-beta INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11168687	2L_11168687_SNP [dm3] 2L_11168687_SNP [dm6]	G	T	9.262e^-4	0.165	UPSTREAM Ca-beta INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11168689	2L_11168689_SNP [dm3] 2L_11168689_SNP [dm6]	T	A	9.262e^-4	0.165	UPSTREAM Ca-beta INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11169147	2L_11169147_SNP [dm3] 2L_11169147_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON Ca-beta	TF binding site mE1_TFBS_Trl
2L	11169739	2L_11169739_SNP [dm3] 2L_11169739_SNP [dm6]	T	G	9.262e^-4	0.165	INTRON Ca-beta
2L	11170006	2L_11170006_SNP [dm3] 2L_11170006_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON Ca-beta
2L	11170072	2L_11170072_SNP [dm3] 2L_11170072_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON Ca-beta
2L	11172279	2L_11172279_SNP [dm3] 2L_11172279_SNP [dm6]	A	C	9.262e^-4	0.165	UPSTREAM Vm32E INTRON Ca-beta	TF binding site mE1_TFBS_cad
2L	11173476	2L_11173476_SNP [dm3] 2L_11173476_SNP [dm6]	C	A	9.262e^-4	0.165	INTRON Ca-beta
2L	11173484	2L_11173484_SNP [dm3] 2L_11173484_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON Ca-beta
2L	11173821	2L_11173821_INS [dm3] 2L_11173821_INS [dm6]	C	CTCC	9.262e^-4	0.165	INTRON Ca-beta	TF binding site mE1_TFBS_HSA
2L	11185688	2L_11185688_SNP [dm3] 2L_11185688_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	11195392	2L_11195392_SNP [dm3] 2L_11195392_SNP [dm6]	A	T	9.262e^-4	0.165	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da
2L	11195661	2L_11195661_SNP [dm3] 2L_11195661_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON Ca-beta
2L	11222972	2L_11222972_SNP [dm3] 2L_11222972_SNP [dm6]	T	A	9.262e^-4	0.165	INTRON ab
2L	11287345	2L_11287345_SNP [dm3] 2L_11287345_SNP [dm6]	T	A	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1128846	2L_1128846_SNP [dm3] 2L_1128846_SNP [dm6]	G	A	9.262e^-4	0.165	UTR_5_PRIME Pino UPSTREAM CG4552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1128993	2L_1128993_SNP [dm3] 2L_1128993_SNP [dm6]	A	T	9.262e^-4	0.165	UPSTREAM CG4552 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1128996	2L_1128996_SNP [dm3] 2L_1128996_SNP [dm6]	G	A	9.262e^-4	0.165	UPSTREAM CG4552 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1129033	2L_1129033_SNP [dm3] 2L_1129033_SNP [dm6]	A	C	9.262e^-4	0.165	UPSTREAM CG4552 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1129101	2L_1129101_SNP [dm3] 2L_1129101_SNP [dm6]	G	A	9.262e^-4	0.165	UPSTREAM CG4552 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11307265	2L_11307265_SNP [dm3] 2L_11307265_SNP [dm6]	G	A	9.262e^-4	0.165	UPSTREAM CR43721 INTERGENIC
2L	11308971	2L_11308971_SNP [dm3] 2L_11308971_SNP [dm6]	G	T	9.262e^-4	0.165	DOWNSTREAM CR43721 INTERGENIC
2L	11308995	2L_11308995_SNP [dm3] 2L_11308995_SNP [dm6]	A	G	9.262e^-4	0.165	DOWNSTREAM CR43721 INTERGENIC
2L	11309191	2L_11309191_SNP [dm3] 2L_11309191_SNP [dm6]	C	G	9.262e^-4	0.165	INTERGENIC
2L	11346078	2L_11346078_SNP [dm3] 2L_11346078_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC
2L	11346080	2L_11346080_SNP [dm3] 2L_11346080_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC
2L	1135078	2L_1135078_SNP [dm3] 2L_1135078_SNP [dm6]	A	G	9.262e^-4	0.165	NON_SYNONYMOUS_CODING CG4577 UPSTREAM Iris	TF binding site mE1_TFBS_chinmo
2L	1135101	2L_1135101_SNP [dm3] 2L_1135101_SNP [dm6]	A	C	9.262e^-4	0.165	INTRON CG4577	TF binding site mE1_TFBS_chinmo
2L	11429958	2L_11429958_SNP [dm3] 2L_11429958_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC
2L	11471357	2L_11471357_SNP [dm3] 2L_11471357_SNP [dm6]	A	C	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11471397	2L_11471397_SNP [dm3] 2L_11471397_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1149590	2L_1149590_SNP [dm3] 2L_1149590_SNP [dm6]	G	C	9.262e^-4	0.165	DOWNSTREAM CG4749 INTRON Tfb4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1149615	2L_1149615_SNP [dm3] 2L_1149615_SNP [dm6]	T	A	9.262e^-4	0.165	DOWNSTREAM CG4749 INTRON Tfb4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11497300	2L_11497300_SNP [dm3] 2L_11497300_SNP [dm6]	A	C	9.262e^-4	0.165	SYNONYMOUS_CODING CG6488	TF binding site mE1_TFBS_cad
2L	11498924	2L_11498924_SNP [dm3] 2L_11498924_SNP [dm6]	T	A	9.262e^-4	0.165	UTR_5_PRIME CG6488	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11498944	2L_11498944_SNP [dm3] 2L_11498944_SNP [dm6]	C	G	9.262e^-4	0.165	UTR_5_PRIME CG6488	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11499535	2L_11499535_SNP [dm3] 2L_11499535_SNP [dm6]	T	A	9.262e^-4	0.165	UPSTREAM CG6488 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11527270	2L_11527270_SNP [dm3] 2L_11527270_SNP [dm6]	A	T	9.262e^-4	0.165	INTRON CG31705
2L	11530310	2L_11530310_SNP [dm3] 2L_11530310_SNP [dm6]	C	A	9.262e^-4	0.165	INTRON CG31706
2L	11530439	2L_11530439_SNP [dm3] 2L_11530439_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON CG31706
2L	11530697	2L_11530697_SNP [dm3] 2L_11530697_SNP [dm6]	G	T	9.262e^-4	0.165	NON_SYNONYMOUS_CODING CG31706
2L	1154507	2L_1154507_SNP [dm3] 2L_1154507_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON capt	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1155189	2L_1155189_SNP [dm3] 2L_1155189_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON capt
2L	1155226	2L_1155226_SNP [dm3] 2L_1155226_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON capt
2L	1155227	2L_1155227_SNP [dm3] 2L_1155227_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON capt
2L	1155302	2L_1155302_SNP [dm3] 2L_1155302_SNP [dm6]	T	G	9.262e^-4	0.165	INTRON capt
2L	11636734	2L_11636734_SNP [dm3] 2L_11636734_SNP [dm6]	A	C	9.262e^-4	0.165	INTERGENIC
2L	11642762	2L_11642762_SNP [dm3] 2L_11642762_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC
2L	11650611	2L_11650611_SNP [dm3] 2L_11650611_SNP [dm6]	A	T	9.262e^-4	0.165	DOWNSTREAM CG12307 INTERGENIC
2L	11653121	2L_11653121_SNP [dm3] 2L_11653121_SNP [dm6]	G	T	9.262e^-4	0.165	NON_SYNONYMOUS_CODING CG4983	TF binding site mE1_TFBS_sens
2L	117038	2L_117038_SNP [dm3] 2L_117038_SNP [dm6]	C	G	9.262e^-4	0.165	UTR_3_PRIME CG4822 UPSTREAM CG13694 DOWNSTREAM CG4822 INTRON CG11455
2L	11764972	2L_11764972_SNP [dm3] 2L_11764972_SNP [dm6]	A	T	9.262e^-4	0.165	INTERGENIC
2L	11785587	2L_11785587_SNP [dm3] 2L_11785587_SNP [dm6]	G	T	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11785949	2L_11785949_SNP [dm3] 2L_11785949_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11835040	2L_11835040_SNP [dm3] 2L_11835040_SNP [dm6]	T	A	9.262e^-4	0.165	UPSTREAM CR45013 DOWNSTREAM CG45011 & 1 other INTRON Pde1c
2L	11835043	2L_11835043_SNP [dm3] 2L_11835043_SNP [dm6]	T	A	9.262e^-4	0.165	UPSTREAM CR45013 DOWNSTREAM CG45011 & 1 other INTRON Pde1c
2L	11835045	2L_11835045_SNP [dm3] 2L_11835045_SNP [dm6]	C	T	9.262e^-4	0.165	UPSTREAM CR45013 DOWNSTREAM CG45011 & 1 other INTRON Pde1c
2L	11835188	2L_11835188_SNP [dm3] 2L_11835188_SNP [dm6]	G	A	9.262e^-4	0.165	SYNONYMOUS_CODING Pde1c UPSTREAM CR45013 DOWNSTREAM CG45011 & 1 other
2L	11855051	2L_11855051_SNP [dm3] 2L_11855051_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11855126	2L_11855126_SNP [dm3] 2L_11855126_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON Pde1c
2L	11857374	2L_11857374_SNP [dm3] 2L_11857374_SNP [dm6]	G	T	9.262e^-4	0.165	INTRON Pde1c
2L	11858701	2L_11858701_SNP [dm3] 2L_11858701_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON Pde1c
2L	11858722	2L_11858722_SNP [dm3] 2L_11858722_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON Pde1c
2L	11858758	2L_11858758_SNP [dm3] 2L_11858758_SNP [dm6]	T	A	9.262e^-4	0.165	INTRON Pde1c
2L	11858779	2L_11858779_SNP [dm3] 2L_11858779_SNP [dm6]	T	A	9.262e^-4	0.165	INTRON Pde1c
2L	11862573	2L_11862573_SNP [dm3] 2L_11862573_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON Pde1c
2L	11868453	2L_11868453_SNP [dm3] 2L_11868453_SNP [dm6]	C	A	9.262e^-4	0.165	INTRON Pde1c
2L	11894634	2L_11894634_SNP [dm3] 2L_11894634_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON Pde1c
2L	11895322	2L_11895322_SNP [dm3] 2L_11895322_SNP [dm6]	G	T	9.262e^-4	0.165	INTRON Pde1c
2L	11904111	2L_11904111_SNP [dm3] 2L_11904111_SNP [dm6]	A	T	9.262e^-4	0.165	INTRON Pde1c
2L	11904124	2L_11904124_SNP [dm3] 2L_11904124_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON Pde1c
2L	11904125	2L_11904125_SNP [dm3] 2L_11904125_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON Pde1c
2L	11904132	2L_11904132_MNP [dm3] 2L_11904132_MNP [dm6]	GTG	TCA	9.262e^-4	0.165	INTRON Pde1c
2L	11904371	2L_11904371_SNP [dm3] 2L_11904371_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON Pde1c
2L	11913053	2L_11913053_INS [dm3] 2L_11913053_INS [dm6]	A	ACATGTACACA...	9.262e^-4	0.165	INTRON Pde1c
2L	11931436	2L_11931436_SNP [dm3] 2L_11931436_SNP [dm6]	C	G	9.262e^-4	0.165	INTERGENIC
2L	11936506	2L_11936506_SNP [dm3] 2L_11936506_SNP [dm6]	G	A	9.262e^-4	0.165	NON_SYNONYMOUS_CODING Or33b DOWNSTREAM Or33a
2L	11955002	2L_11955002_SNP [dm3] 2L_11955002_SNP [dm6]	C	T	9.262e^-4	0.165	EXON CR43314
2L	11970041	2L_11970041_SNP [dm3] 2L_11970041_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11975642	2L_11975642_SNP [dm3] 2L_11975642_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC
2L	11975691	2L_11975691_SNP [dm3] 2L_11975691_SNP [dm6]	A	T	9.262e^-4	0.165	INTERGENIC
2L	1211005	2L_1211005_SNP [dm3] 2L_1211005_SNP [dm6]	T	A	9.262e^-4	0.165	INTERGENIC
2L	12159045	2L_12159045_SNP [dm3] 2L_12159045_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON CG31760	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12162776	2L_12162776_SNP [dm3] 2L_12162776_SNP [dm6]	G	A	9.262e^-4	0.165	NON_SYNONYMOUS_CODING CG31760 DOWNSTREAM CG31861
2L	12166115	2L_12166115_SNP [dm3] 2L_12166115_SNP [dm6]	T	A	9.262e^-4	0.165	SYNONYMOUS_CODING ZnT33D UTR_3_PRIME ZnT33D INTRON CG31760
2L	12166484	2L_12166484_SNP [dm3] 2L_12166484_SNP [dm6]	A	G	9.262e^-4	0.165	SYNONYMOUS_CODING ZnT33D UTR_3_PRIME ZnT33D INTRON CG31760
2L	12166550	2L_12166550_SNP [dm3] 2L_12166550_SNP [dm6]	T	C	9.262e^-4	0.165	SYNONYMOUS_CODING ZnT33D UTR_3_PRIME ZnT33D INTRON CG31760
2L	12166570	2L_12166570_SNP [dm3] 2L_12166570_SNP [dm6]	A	G	9.262e^-4	0.165	NON_SYNONYMOUS_CODING ZnT33D UTR_3_PRIME ZnT33D INTRON CG31760
2L	12166577	2L_12166577_SNP [dm3] 2L_12166577_SNP [dm6]	C	G	9.262e^-4	0.165	SYNONYMOUS_CODING ZnT33D UTR_3_PRIME ZnT33D INTRON CG31760
2L	12166691	2L_12166691_SNP [dm3] 2L_12166691_SNP [dm6]	T	C	9.262e^-4	0.165	UTR_3_PRIME ZnT33D INTRON CG31760
2L	12166706	2L_12166706_SNP [dm3] 2L_12166706_SNP [dm6]	T	C	9.262e^-4	0.165	DOWNSTREAM ZnT33D INTRON CG31760
2L	12167060	2L_12167060_SNP [dm3] 2L_12167060_SNP [dm6]	G	A	9.262e^-4	0.165	DOWNSTREAM ZnT33D INTRON CG31760
2L	12167081	2L_12167081_SNP [dm3] 2L_12167081_SNP [dm6]	C	T	9.262e^-4	0.165	DOWNSTREAM ZnT33D INTRON CG31760
2L	12167121	2L_12167121_SNP [dm3] 2L_12167121_SNP [dm6]	T	C	9.262e^-4	0.165	SYNONYMOUS_CODING CG31760 DOWNSTREAM ZnT33D
2L	12175985	2L_12175985_INS [dm3] 2L_12175985_INS [dm6]	A	TTTGTG	9.262e^-4	0.165	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
2L	12176006	2L_12176006_SNP [dm3] 2L_12176006_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
2L	12176017	2L_12176017_SNP [dm3] 2L_12176017_SNP [dm6]	A	C	9.262e^-4	0.165	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
2L	12208502	2L_12208502_SNP [dm3] 2L_12208502_SNP [dm6]	C	A	9.262e^-4	0.165	NON_SYNONYMOUS_CODING CG31759 INTRON aret
2L	12208518	2L_12208518_SNP [dm3] 2L_12208518_SNP [dm6]	T	C	9.262e^-4	0.165	SYNONYMOUS_CODING CG31759 INTRON aret
2L	12208533	2L_12208533_SNP [dm3] 2L_12208533_SNP [dm6]	A	G	9.262e^-4	0.165	SYNONYMOUS_CODING CG31759 INTRON aret
2L	12212891	2L_12212891_SNP [dm3] 2L_12212891_SNP [dm6]	G	C	9.262e^-4	0.165	INTRON aret
2L	12237442	2L_12237442_SNP [dm3] 2L_12237442_SNP [dm6]	T	A	9.262e^-4	0.165	INTRON aret	TF binding site mE1_TFBS_inv
2L	12239261	2L_12239261_SNP [dm3] 2L_12239261_SNP [dm6]	C	A	9.262e^-4	0.165	INTRON aret
2L	12239295	2L_12239295_SNP [dm3] 2L_12239295_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON aret
2L	12239307	2L_12239307_SNP [dm3] 2L_12239307_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON aret
2L	12245026	2L_12245026_SNP [dm3] 2L_12245026_SNP [dm6]	A	T	9.262e^-4	0.165	INTRON aret
2L	122484	2L_122484_SNP [dm3] 2L_122484_SNP [dm6]	T	C	9.262e^-4	0.165	UPSTREAM CG4822 & 1 other DOWNSTREAM CG3164 INTRON CG11455
2L	12284093	2L_12284093_SNP [dm3] 2L_12284093_SNP [dm6]	G	T	9.262e^-4	0.165	INTRON aret
2L	12284105	2L_12284105_SNP [dm3] 2L_12284105_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON aret
2L	12284146	2L_12284146_SNP [dm3] 2L_12284146_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON aret
2L	12284148	2L_12284148_INS [dm3] 2L_12284148_INS [dm6]	C	CAAGCAC	9.262e^-4	0.165	INTRON aret
2L	12284157	2L_12284157_SNP [dm3] 2L_12284157_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON aret
2L	12284166	2L_12284166_SNP [dm3] 2L_12284166_SNP [dm6]	A	C	9.262e^-4	0.165	INTRON aret
2L	12291782	2L_12291782_SNP [dm3] 2L_12291782_SNP [dm6]	T	A	9.262e^-4	0.165	INTRON aret
2L	12300109	2L_12300109_SNP [dm3] 2L_12300109_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON aret
2L	12307056	2L_12307056_SNP [dm3] 2L_12307056_SNP [dm6]	G	C	9.262e^-4	0.165	INTRON aret
2L	12308835	2L_12308835_SNP [dm3] 2L_12308835_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON aret
2L	12310361	2L_12310361_SNP [dm3] 2L_12310361_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12329402	2L_12329402_SNP [dm3] 2L_12329402_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	12331142	2L_12331142_SNP [dm3] 2L_12331142_SNP [dm6]	G	T	9.262e^-4	0.165	INTERGENIC
2L	12331248	2L_12331248_SNP [dm3] 2L_12331248_SNP [dm6]	G	T	9.262e^-4	0.165	INTERGENIC
2L	12331265	2L_12331265_SNP [dm3] 2L_12331265_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC
2L	12331357	2L_12331357_SNP [dm3] 2L_12331357_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	12331358	2L_12331358_SNP [dm3] 2L_12331358_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC
2L	12367693	2L_12367693_SNP [dm3] 2L_12367693_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON bru-2	TF binding site BDTNP1_TFBS_twi
2L	12372462	2L_12372462_SNP [dm3] 2L_12372462_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON bru-2
2L	12372501	2L_12372501_SNP [dm3] 2L_12372501_SNP [dm6]	C	A	9.262e^-4	0.165	INTRON bru-2
2L	12387620	2L_12387620_SNP [dm3] 2L_12387620_SNP [dm6]	A	C	9.262e^-4	0.165	INTRON bru-2
2L	12387700	2L_12387700_SNP [dm3] 2L_12387700_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON bru-2
2L	12403977	2L_12403977_SNP [dm3] 2L_12403977_SNP [dm6]	T	A	9.262e^-4	0.165	NON_SYNONYMOUS_CODING vir-1	TF binding site mE1_TFBS_HSA
2L	12403983	2L_12403983_SNP [dm3] 2L_12403983_SNP [dm6]	C	A	9.262e^-4	0.165	NON_SYNONYMOUS_CODING vir-1	TF binding site mE1_TFBS_HSA
2L	12418975	2L_12418975_SNP [dm3] 2L_12418975_SNP [dm6]	A	C	9.262e^-4	0.165	INTRON vir-1
2L	12419009	2L_12419009_SNP [dm3] 2L_12419009_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON vir-1
2L	12420091	2L_12420091_SNP [dm3] 2L_12420091_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON vir-1
2L	12420157	2L_12420157_SNP [dm3] 2L_12420157_SNP [dm6]	G	T	9.262e^-4	0.165	INTRON vir-1
2L	12461622	2L_12461622_SNP [dm3] 2L_12461622_SNP [dm6]	A	T	9.262e^-4	0.165	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1246325	2L_1246325_SNP [dm3] 2L_1246325_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC
2L	12485010	2L_12485010_SNP [dm3] 2L_12485010_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	12546914	2L_12546914_SNP [dm3] 2L_12546914_SNP [dm6]	A	T	9.262e^-4	0.165	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	12546936	2L_12546936_SNP [dm3] 2L_12546936_SNP [dm6]	G	C	9.262e^-4	0.165	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	12546939	2L_12546939_SNP [dm3] 2L_12546939_SNP [dm6]	T	G	9.262e^-4	0.165	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	12565944	2L_12565944_SNP [dm3] 2L_12565944_SNP [dm6]	A	T	9.262e^-4	0.165	INTERGENIC
2L	12565945	2L_12565945_SNP [dm3] 2L_12565945_SNP [dm6]	A	T	9.262e^-4	0.165	INTERGENIC
2L	12565988	2L_12565988_SNP [dm3] 2L_12565988_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	12566099	2L_12566099_SNP [dm3] 2L_12566099_SNP [dm6]	T	A	9.262e^-4	0.165	INTERGENIC
2L	12566204	2L_12566204_SNP [dm3] 2L_12566204_SNP [dm6]	G	A	9.262e^-4	0.165	INTERGENIC
2L	12566241	2L_12566241_DEL [dm3] 2L_12566241_DEL [dm6]	AAT	A	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12566615	2L_12566615_SNP [dm3] 2L_12566615_SNP [dm6]	G	C	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12566680	2L_12566680_SNP [dm3] 2L_12566680_SNP [dm6]	G	C	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12566834	2L_12566834_SNP [dm3] 2L_12566834_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12567174	2L_12567174_SNP [dm3] 2L_12567174_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12567179	2L_12567179_SNP [dm3] 2L_12567179_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12567508	2L_12567508_SNP [dm3] 2L_12567508_SNP [dm6]	C	A	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12567620	2L_12567620_SNP [dm3] 2L_12567620_SNP [dm6]	T	G	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12567680	2L_12567680_SNP [dm3] 2L_12567680_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12572461	2L_12572461_SNP [dm3] 2L_12572461_SNP [dm6]	G	C	9.262e^-4	0.165	UPSTREAM CR44597 INTERGENIC
2L	12576177	2L_12576177_SNP [dm3] 2L_12576177_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12577608	2L_12577608_SNP [dm3] 2L_12577608_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	12577610	2L_12577610_SNP [dm3] 2L_12577610_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	12577613	2L_12577613_SNP [dm3] 2L_12577613_SNP [dm6]	T	A	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	12577650	2L_12577650_SNP [dm3] 2L_12577650_SNP [dm6]	A	T	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	12577674	2L_12577674_INS [dm3] 2L_12577674_INS [dm6]	T	TA	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12577681	2L_12577681_SNP [dm3] 2L_12577681_SNP [dm6]	G	A	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12577694	2L_12577694_SNP [dm3] 2L_12577694_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12577698	2L_12577698_SNP [dm3] 2L_12577698_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12577701	2L_12577701_SNP [dm3] 2L_12577701_SNP [dm6]	T	A	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12577737	2L_12577737_DEL [dm3] 2L_12577737_DEL [dm6]	CA	C	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12578784	2L_12578784_SNP [dm3] 2L_12578784_SNP [dm6]	A	T	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	12579572	2L_12579572_SNP [dm3] 2L_12579572_SNP [dm6]	A	T	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	12580745	2L_12580745_SNP [dm3] 2L_12580745_SNP [dm6]	C	A	9.262e^-4	0.165	UPSTREAM CR44596 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	12601010	2L_12601010_SNP [dm3] 2L_12601010_SNP [dm6]	T	G	9.262e^-4	0.165	INTRON nub
2L	12663994	2L_12663994_SNP [dm3] 2L_12663994_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON pdm2	TF binding site mE1_TFBS_HSA
2L	12665157	2L_12665157_DEL [dm3] 2L_12665157_DEL [dm6]	AA	A	9.262e^-4	0.165	INTRON pdm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12680725	2L_12680725_SNP [dm3] 2L_12680725_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON pdm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1270913	2L_1270913_SNP [dm3] 2L_1270913_SNP [dm6]	T	A	9.262e^-4	0.165	INTRON robo3
2L	12711530	2L_12711530_SNP [dm3] 2L_12711530_SNP [dm6]	A	T	9.262e^-4	0.165	SYNONYMOUS_CODING CG5787	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12719814	2L_12719814_SNP [dm3] 2L_12719814_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON CG5792 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12720059	2L_12720059_SNP [dm3] 2L_12720059_SNP [dm6]	T	A	9.262e^-4	0.165	INTRON CG5792 & 1 other	TF binding site mE1_TFBS_sens
2L	1273519	2L_1273519_SNP [dm3] 2L_1273519_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON robo3
2L	1273527	2L_1273527_SNP [dm3] 2L_1273527_SNP [dm6]	T	A	9.262e^-4	0.165	INTRON robo3
2L	1283239	2L_1283239_SNP [dm3] 2L_1283239_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON robo3
2L	1283845	2L_1283845_SNP [dm3] 2L_1283845_SNP [dm6]	C	G	9.262e^-4	0.165	INTRON robo3
2L	12849733	2L_12849733_SNP [dm3] 2L_12849733_SNP [dm6]	G	T	9.262e^-4	0.165	INTERGENIC
2L	12850259	2L_12850259_SNP [dm3] 2L_12850259_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC
2L	12850269	2L_12850269_SNP [dm3] 2L_12850269_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC
2L	12851815	2L_12851815_SNP [dm3] 2L_12851815_SNP [dm6]	G	T	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_inv
2L	12857366	2L_12857366_DEL [dm3] 2L_12857366_DEL [dm6]	GG	G	9.262e^-4	0.165	INTERGENIC
2L	12904216	2L_12904216_SNP [dm3] 2L_12904216_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	12904222	2L_12904222_SNP [dm3] 2L_12904222_SNP [dm6]	C	G	9.262e^-4	0.165	INTERGENIC
2L	12942974	2L_12942974_SNP [dm3] 2L_12942974_SNP [dm6]	T	A	9.262e^-4	0.165	INTERGENIC
2L	12944305	2L_12944305_SNP [dm3] 2L_12944305_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC
2L	12948550	2L_12948550_SNP [dm3] 2L_12948550_SNP [dm6]	A	C	9.262e^-4	0.165	INTERGENIC
2L	12972623	2L_12972623_SNP [dm3] 2L_12972623_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC
2L	12972639	2L_12972639_SNP [dm3] 2L_12972639_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	12982336	2L_12982336_SNP [dm3] 2L_12982336_SNP [dm6]	A	T	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12982349	2L_12982349_DEL [dm3] 2L_12982349_DEL [dm6]	ATT	C	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12982359	2L_12982359_SNP [dm3] 2L_12982359_SNP [dm6]	T	A	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13082899	2L_13082899_SNP [dm3] 2L_13082899_SNP [dm6]	T	A	9.262e^-4	0.165	INTERGENIC
2L	13082901	2L_13082901_SNP [dm3] 2L_13082901_SNP [dm6]	T	A	9.262e^-4	0.165	INTERGENIC
2L	13082902	2L_13082902_SNP [dm3] 2L_13082902_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC
2L	13082965	2L_13082965_SNP [dm3] 2L_13082965_SNP [dm6]	C	G	9.262e^-4	0.165	INTERGENIC
2L	13083053	2L_13083053_SNP [dm3] 2L_13083053_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC
2L	13083841	2L_13083841_SNP [dm3] 2L_13083841_SNP [dm6]	A	C	9.262e^-4	0.165	INTERGENIC
2L	1313120	2L_1313120_SNP [dm3] 2L_1313120_SNP [dm6]	A	T	9.262e^-4	0.165	INTERGENIC
2L	1313462	2L_1313462_SNP [dm3] 2L_1313462_SNP [dm6]	T	G	9.262e^-4	0.165	INTERGENIC
2L	1314865	2L_1314865_SNP [dm3] 2L_1314865_SNP [dm6]	G	C	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1316693	2L_1316693_SNP [dm3] 2L_1316693_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC
2L	1316715	2L_1316715_SNP [dm3] 2L_1316715_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC
2L	13190051	2L_13190051_SNP [dm3] 2L_13190051_SNP [dm6]	C	A	9.262e^-4	0.165	INTRON CG16974
2L	1323027	2L_1323027_SNP [dm3] 2L_1323027_SNP [dm6]	A	C	9.262e^-4	0.165	INTERGENIC
2L	1323038	2L_1323038_SNP [dm3] 2L_1323038_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	1323487	2L_1323487_SNP [dm3] 2L_1323487_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC
2L	1323488	2L_1323488_SNP [dm3] 2L_1323488_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC
2L	1324961	2L_1324961_SNP [dm3] 2L_1324961_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC
2L	13263693	2L_13263693_SNP [dm3] 2L_13263693_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON CG44085
2L	13265805	2L_13265805_SNP [dm3] 2L_13265805_SNP [dm6]	G	T	9.262e^-4	0.165	UTR_5_PRIME CG31848 INTRON CG44085	TF binding site mE1_TFBS_cad
2L	13265823	2L_13265823_SNP [dm3] 2L_13265823_SNP [dm6]	C	A	9.262e^-4	0.165	UTR_5_PRIME CG31848 INTRON CG44085	TF binding site mE1_TFBS_cad
2L	13277272	2L_13277272_SNP [dm3] 2L_13277272_SNP [dm6]	A	G	9.262e^-4	0.165	NON_SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad
2L	13277628	2L_13277628_SNP [dm3] 2L_13277628_SNP [dm6]	G	A	9.262e^-4	0.165	NON_SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13278167	2L_13278167_SNP [dm3] 2L_13278167_SNP [dm6]	A	G	9.262e^-4	0.165	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13278213	2L_13278213_SNP [dm3] 2L_13278213_SNP [dm6]	A	G	9.262e^-4	0.165	NON_SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13284886	2L_13284886_SNP [dm3] 2L_13284886_SNP [dm6]	C	T	9.262e^-4	0.165	SYNONYMOUS_CODING Drep-4 UPSTREAM CR44083 DOWNSTREAM CG44085	TF binding site mE1_TFBS_cad
2L	13294047	2L_13294047_SNP [dm3] 2L_13294047_SNP [dm6]	T	C	9.262e^-4	0.165	DOWNSTREAM CG16824 INTRON CG31729	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13296256	2L_13296256_SNP [dm3] 2L_13296256_SNP [dm6]	G	A	9.262e^-4	0.165	UPSTREAM CG31729 INTRON CG31729	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13296346	2L_13296346_SNP [dm3] 2L_13296346_SNP [dm6]	C	T	9.262e^-4	0.165	UPSTREAM CG31729 INTRON CG31729	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13297355	2L_13297355_SNP [dm3] 2L_13297355_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON CG31729	TF binding site BDTNP1_TFBS_dl
2L	13313778	2L_13313778_SNP [dm3] 2L_13313778_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON CG43778	TF binding site mE1_TFBS_HSA
2L	13404136	2L_13404136_SNP [dm3] 2L_13404136_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON CG7110
2L	13413418	2L_13413418_SNP [dm3] 2L_13413418_SNP [dm6]	T	A	9.262e^-4	0.165	UTR_3_PRIME CG16848 DOWNSTREAM CG16956	TF binding site mE1_TFBS_cad
2L	13418783	2L_13418783_SNP [dm3] 2L_13418783_SNP [dm6]	T	A	9.262e^-4	0.165	UPSTREAM CG43850 INTRON CG43850 & 1 other
2L	13418806	2L_13418806_SNP [dm3] 2L_13418806_SNP [dm6]	T	G	9.262e^-4	0.165	UPSTREAM CG43850 INTRON CG43850 & 1 other
2L	13432431	2L_13432431_SNP [dm3] 2L_13432431_SNP [dm6]	A	T	9.262e^-4	0.165	INTRON CG42784
2L	13432445	2L_13432445_SNP [dm3] 2L_13432445_SNP [dm6]	C	G	9.262e^-4	0.165	INTRON CG42784
2L	13432446	2L_13432446_SNP [dm3] 2L_13432446_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON CG42784
2L	13432497	2L_13432497_SNP [dm3] 2L_13432497_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON CG42784
2L	13432501	2L_13432501_SNP [dm3] 2L_13432501_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON CG42784
2L	13432547	2L_13432547_SNP [dm3] 2L_13432547_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON CG42784
2L	13433684	2L_13433684_SNP [dm3] 2L_13433684_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON CG42784
2L	13433819	2L_13433819_SNP [dm3] 2L_13433819_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON CG42784	TF binding site mE1_TFBS_cad
2L	13433832	2L_13433832_SNP [dm3] 2L_13433832_SNP [dm6]	G	C	9.262e^-4	0.165	INTRON CG42784	TF binding site mE1_TFBS_cad
2L	13433835	2L_13433835_SNP [dm3] 2L_13433835_SNP [dm6]	A	C	9.262e^-4	0.165	INTRON CG42784	TF binding site mE1_TFBS_cad
2L	13446380	2L_13446380_SNP [dm3] 2L_13446380_SNP [dm6]	G	A	9.262e^-4	0.165	UPSTREAM CG9267 INTRON CG42784	TF binding site mE1_TFBS_HSA
2L	13459497	2L_13459497_SNP [dm3] 2L_13459497_SNP [dm6]	G	C	9.262e^-4	0.165	UPSTREAM CR45684 & 1 other INTRON CG42784
2L	13470023	2L_13470023_SNP [dm3] 2L_13470023_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON CG42784
2L	13470415	2L_13470415_SNP [dm3] 2L_13470415_SNP [dm6]	A	T	9.262e^-4	0.165	INTRON CG42784
2L	13470515	2L_13470515_SNP [dm3] 2L_13470515_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON CG42784
2L	13477611	2L_13477611_SNP [dm3] 2L_13477611_SNP [dm6]	T	A	9.262e^-4	0.165	INTRON CG42784
2L	13477644	2L_13477644_SNP [dm3] 2L_13477644_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON CG42784
2L	13477727	2L_13477727_SNP [dm3] 2L_13477727_SNP [dm6]	A	C	9.262e^-4	0.165	INTRON CG42784
2L	13509433	2L_13509433_SNP [dm3] 2L_13509433_SNP [dm6]	G	T	9.262e^-4	0.165	INTRON B4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	13509434	2L_13509434_SNP [dm3] 2L_13509434_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON B4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1352929	2L_1352929_SNP [dm3] 2L_1352929_SNP [dm6]	T	C	9.262e^-4	0.165	UPSTREAM CG5556 DOWNSTREAM CG5561 INTERGENIC
2L	13695094	2L_13695094_SNP [dm3] 2L_13695094_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON CG31814
2L	13695100	2L_13695100_SNP [dm3] 2L_13695100_SNP [dm6]	T	G	9.262e^-4	0.165	INTRON CG31814
2L	13700973	2L_13700973_SNP [dm3] 2L_13700973_SNP [dm6]	C	A	9.262e^-4	0.165	INTRON CG31814
2L	13719442	2L_13719442_SNP [dm3] 2L_13719442_SNP [dm6]	G	T	9.262e^-4	0.165	INTERGENIC
2L	13726857	2L_13726857_SNP [dm3] 2L_13726857_SNP [dm6]	A	C	9.262e^-4	0.165	INTERGENIC
2L	13741351	2L_13741351_SNP [dm3] 2L_13741351_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC
2L	13744090	2L_13744090_SNP [dm3] 2L_13744090_SNP [dm6]	G	A	9.262e^-4	0.165	INTERGENIC
2L	13746984	2L_13746984_SNP [dm3] 2L_13746984_SNP [dm6]	C	T	9.262e^-4	0.165	UTR_5_PRIME TM9SF4 DOWNSTREAM mir-1002 & 1 other EXON CR44846	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	13748056	2L_13748056_SNP [dm3] 2L_13748056_SNP [dm6]	C	A	9.262e^-4	0.165	UPSTREAM mir-1002 & 1 other INTRON CR44846 & 1 other
2L	13749387	2L_13749387_SNP [dm3] 2L_13749387_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON CR44846 & 1 other
2L	13750418	2L_13750418_SNP [dm3] 2L_13750418_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON CR44846 & 1 other
2L	13752319	2L_13752319_SNP [dm3] 2L_13752319_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON CR44846 & 1 other
2L	13753208	2L_13753208_SNP [dm3] 2L_13753208_SNP [dm6]	G	T	9.262e^-4	0.165	INTRON CR44846 & 1 other
2L	1381396	2L_1381396_SNP [dm3] 2L_1381396_SNP [dm6]	A	C	9.262e^-4	0.165	UTR_3_PRIME lea UPSTREAM CR44898 EXON CR44897	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	1381522	2L_1381522_SNP [dm3] 2L_1381522_SNP [dm6]	T	C	9.262e^-4	0.165	SYNONYMOUS_CODING lea UTR_3_PRIME lea UPSTREAM CR44898 EXON CR44897	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	1381837	2L_1381837_SNP [dm3] 2L_1381837_SNP [dm6]	T	C	9.262e^-4	0.165	SYNONYMOUS_CODING lea UPSTREAM CR44898 EXON CR44897	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13836701	2L_13836701_SNP [dm3] 2L_13836701_SNP [dm6]	T	A	9.262e^-4	0.165	INTRON CenG1A
2L	13841779	2L_13841779_SNP [dm3] 2L_13841779_SNP [dm6]	C	T	9.262e^-4	0.165	UPSTREAM CG33307 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	13879882	2L_13879882_SNP [dm3] 2L_13879882_SNP [dm6]	A	T	9.262e^-4	0.165	INTRON CenG1A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	13879900	2L_13879900_SNP [dm3] 2L_13879900_SNP [dm6]	T	A	9.262e^-4	0.165	INTRON CenG1A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	1389712	2L_1389712_SNP [dm3] 2L_1389712_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON lea	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2L	13969729	2L_13969729_SNP [dm3] 2L_13969729_SNP [dm6]	T	G	9.262e^-4	0.165	SYNONYMOUS_CODING NimB4 UPSTREAM NimB5	TF binding site mE1_TFBS_chinmo
2L	13980673	2L_13980673_SNP [dm3] 2L_13980673_SNP [dm6]	T	C	9.262e^-4	0.165	SYNONYMOUS_CODING NimC2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	13987258	2L_13987258_DEL [dm3] 2L_13987258_DEL [dm6]	TCCTTGCAACCGCACACACA...	T	9.262e^-4	0.165	INTRON rk	TF binding site mE1_TFBS_HSA
2L	14048514	2L_14048514_SNP [dm3] 2L_14048514_SNP [dm6]	G	A	9.262e^-4	0.165	NON_SYNONYMOUS_CODING NimC4 INTRON nAChRalpha5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	14051417	2L_14051417_SNP [dm3] 2L_14051417_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14084846	2L_14084846_SNP [dm3] 2L_14084846_SNP [dm6]	C	A	9.262e^-4	0.165	INTRON nAChRalpha5
2L	14106273	2L_14106273_SNP [dm3] 2L_14106273_SNP [dm6]	A	C	9.262e^-4	0.165	SYNONYMOUS_CODING CG16879
2L	1414380	2L_1414380_SNP [dm3] 2L_1414380_SNP [dm6]	A	T	9.262e^-4	0.165	INTRON lea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	14147317	2L_14147317_SNP [dm3] 2L_14147317_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON CG17341
2L	14154862	2L_14154862_SNP [dm3] 2L_14154862_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON CG17341
2L	14236915	2L_14236915_SNP [dm3] 2L_14236915_SNP [dm6]	C	G	9.262e^-4	0.165	DOWNSTREAM CR44728 INTERGENIC
2L	14241930	2L_14241930_SNP [dm3] 2L_14241930_SNP [dm6]	A	T	9.262e^-4	0.165	DOWNSTREAM CR44216 INTERGENIC
2L	14242307	2L_14242307_SNP [dm3] 2L_14242307_SNP [dm6]	G	A	9.262e^-4	0.165	DOWNSTREAM CR44216 INTERGENIC
2L	14299172	2L_14299172_SNP [dm3] 2L_14299172_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON wb
2L	14307910	2L_14307910_SNP [dm3] 2L_14307910_SNP [dm6]	G	T	9.262e^-4	0.165	INTRON wb
2L	14307942	2L_14307942_SNP [dm3] 2L_14307942_SNP [dm6]	A	C	9.262e^-4	0.165	SPLICE_SITE_REGION wb INTRON wb
2L	14308512	2L_14308512_SNP [dm3] 2L_14308512_SNP [dm6]	C	T	9.262e^-4	0.165	NON_SYNONYMOUS_CODING wb INTRON wb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	14353170	2L_14353170_SNP [dm3] 2L_14353170_SNP [dm6]	C	T	9.262e^-4	0.165	NON_SYNONYMOUS_CODING l_2_34Fd DOWNSTREAM CG43052	TF binding site mE1_TFBS_cad
2L	14354074	2L_14354074_SNP [dm3] 2L_14354074_SNP [dm6]	G	A	9.262e^-4	0.165	SYNONYMOUS_CODING l_2_34Fd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14360627	2L_14360627_SNP [dm3] 2L_14360627_SNP [dm6]	A	G	9.262e^-4	0.165	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14372081	2L_14372081_SNP [dm3] 2L_14372081_SNP [dm6]	T	A	9.262e^-4	0.165	INTERGENIC
2L	1438202	2L_1438202_SNP [dm3] 2L_1438202_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
2L	14391767	2L_14391767_SNP [dm3] 2L_14391767_SNP [dm6]	A	G	9.262e^-4	0.165	SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo
2L	14405287	2L_14405287_SNP [dm3] 2L_14405287_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON elB	TF binding site mE1_TFBS_cad
2L	1444121	2L_1444121_SNP [dm3] 2L_1444121_SNP [dm6]	A	C	9.262e^-4	0.165	DOWNSTREAM CG43402 INTERGENIC
2L	1444150	2L_1444150_SNP [dm3] 2L_1444150_SNP [dm6]	A	G	9.262e^-4	0.165	DOWNSTREAM CG43402 INTERGENIC
2L	14488031	2L_14488031_SNP [dm3] 2L_14488031_SNP [dm6]	G	T	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve
2L	1462013	2L_1462013_SNP [dm3] 2L_1462013_SNP [dm6]	C	G	9.262e^-4	0.165	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	146252	2L_146252_SNP [dm3] 2L_146252_SNP [dm6]	G	C	9.262e^-4	0.165	INTRON CG11455 & 1 other
2L	14697408	2L_14697408_SNP [dm3] 2L_14697408_SNP [dm6]	C	A	9.262e^-4	0.165	INTERGENIC
2L	14729541	2L_14729541_SNP [dm3] 2L_14729541_SNP [dm6]	T	A	9.262e^-4	0.165	NON_SYNONYMOUS_CODING CG42685	TF binding site mE1_TFBS_HSA
2L	1473112	2L_1473112_SNP [dm3] 2L_1473112_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1473140	2L_1473140_SNP [dm3] 2L_1473140_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14752882	2L_14752882_SNP [dm3] 2L_14752882_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	14769308	2L_14769308_SNP [dm3] 2L_14769308_SNP [dm6]	G	A	9.262e^-4	0.165	INTERGENIC
2L	14769310	2L_14769310_SNP [dm3] 2L_14769310_SNP [dm6]	A	T	9.262e^-4	0.165	INTERGENIC
2L	14769344	2L_14769344_SNP [dm3] 2L_14769344_SNP [dm6]	G	A	9.262e^-4	0.165	INTERGENIC
2L	14779867	2L_14779867_SNP [dm3] 2L_14779867_SNP [dm6]	T	A	9.262e^-4	0.165	INTERGENIC
2L	14779885	2L_14779885_SNP [dm3] 2L_14779885_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	14779927	2L_14779927_SNP [dm3] 2L_14779927_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC
2L	14779974	2L_14779974_SNP [dm3] 2L_14779974_SNP [dm6]	G	T	9.262e^-4	0.165	INTERGENIC
2L	14779983	2L_14779983_SNP [dm3] 2L_14779983_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	14780133	2L_14780133_SNP [dm3] 2L_14780133_SNP [dm6]	G	A	9.262e^-4	0.165	INTERGENIC
2L	14789284	2L_14789284_SNP [dm3] 2L_14789284_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	14789287	2L_14789287_SNP [dm3] 2L_14789287_SNP [dm6]	A	T	9.262e^-4	0.165	INTERGENIC
2L	14789289	2L_14789289_SNP [dm3] 2L_14789289_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC
2L	14790368	2L_14790368_SNP [dm3] 2L_14790368_SNP [dm6]	G	A	9.262e^-4	0.165	INTERGENIC
2L	14790423	2L_14790423_SNP [dm3] 2L_14790423_SNP [dm6]	T	G	9.262e^-4	0.165	INTERGENIC
2L	14790533	2L_14790533_SNP [dm3] 2L_14790533_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC
2L	14845798	2L_14845798_SNP [dm3] 2L_14845798_SNP [dm6]	G	A	9.262e^-4	0.165	SYNONYMOUS_CODING CG15279
2L	14850201	2L_14850201_SNP [dm3] 2L_14850201_SNP [dm6]	G	T	9.262e^-4	0.165	INTRON CG15279
2L	14850611	2L_14850611_SNP [dm3] 2L_14850611_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON CG15279
2L	1487056	2L_1487056_SNP [dm3] 2L_1487056_SNP [dm6]	A	T	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	1487060	2L_1487060_SNP [dm3] 2L_1487060_SNP [dm6]	G	T	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	14881393	2L_14881393_SNP [dm3] 2L_14881393_SNP [dm6]	G	T	9.262e^-4	0.165	DOWNSTREAM Mst35Bb INTRON Mst35Ba
2L	14893989	2L_14893989_SNP [dm3] 2L_14893989_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	14925711	2L_14925711_SNP [dm3] 2L_14925711_SNP [dm6]	G	C	9.262e^-4	0.165	NON_SYNONYMOUS_CODING CG3491 INTRON CG42313
2L	14930136	2L_14930136_SNP [dm3] 2L_14930136_SNP [dm6]	C	T	9.262e^-4	0.165	SYNONYMOUS_CODING CG3491 INTRON CG42313
2L	14944069	2L_14944069_SNP [dm3] 2L_14944069_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON CG42313
2L	14944099	2L_14944099_SNP [dm3] 2L_14944099_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON CG42313
2L	14944158	2L_14944158_SNP [dm3] 2L_14944158_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON CG42313
2L	14944382	2L_14944382_SNP [dm3] 2L_14944382_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON CG42313
2L	1496821	2L_1496821_SNP [dm3] 2L_1496821_SNP [dm6]	A	G	9.262e^-4	0.165	NON_SYNONYMOUS_CODING CG31926 UPSTREAM CG31661
2L	14975386	2L_14975386_SNP [dm3] 2L_14975386_SNP [dm6]	C	G	9.262e^-4	0.165	DOWNSTREAM mol & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15007743	2L_15007743_SNP [dm3] 2L_15007743_SNP [dm6]	T	C	9.262e^-4	0.165	UPSTREAM NC2beta & 1 other DOWNSTREAM l_2_35Bc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1502764	2L_1502764_SNP [dm3] 2L_1502764_SNP [dm6]	G	A	9.262e^-4	0.165	UTR_5_PRIME CG7420 INTRON CR44064	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1503081	2L_1503081_SNP [dm3] 2L_1503081_SNP [dm6]	A	G	9.262e^-4	0.165	UPSTREAM CG7420 INTRON CR44064	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1503404	2L_1503404_SNP [dm3] 2L_1503404_SNP [dm6]	T	C	9.262e^-4	0.165	UPSTREAM CG7420 INTRON CR44064	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15066254	2L_15066254_SNP [dm3] 2L_15066254_SNP [dm6]	A	T	9.262e^-4	0.165	INTRON vas & 1 other
2L	15066328	2L_15066328_SNP [dm3] 2L_15066328_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON vas & 1 other
2L	15074569	2L_15074569_SNP [dm3] 2L_15074569_SNP [dm6]	T	A	9.262e^-4	0.165	UPSTREAM CG15270 DOWNSTREAM vas INTERGENIC
2L	15078827	2L_15078827_SNP [dm3] 2L_15078827_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON CG15270	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1508755	2L_1508755_SNP [dm3] 2L_1508755_SNP [dm6]	C	A	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1508757	2L_1508757_SNP [dm3] 2L_1508757_SNP [dm6]	T	A	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15090128	2L_15090128_SNP [dm3] 2L_15090128_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON CG15270
2L	1516012	2L_1516012_SNP [dm3] 2L_1516012_SNP [dm6]	T	C	9.262e^-4	0.165	DOWNSTREAM CG18132 INTERGENIC
2L	1516160	2L_1516160_SNP [dm3] 2L_1516160_SNP [dm6]	C	G	9.262e^-4	0.165	DOWNSTREAM CG18132 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1516218	2L_1516218_SNP [dm3] 2L_1516218_SNP [dm6]	T	A	9.262e^-4	0.165	DOWNSTREAM CG18132 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15199406	2L_15199406_SNP [dm3] 2L_15199406_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON CG4168
2L	15207014	2L_15207014_SNP [dm3] 2L_15207014_SNP [dm6]	A	T	9.262e^-4	0.165	UPSTREAM CR44196 INTERGENIC
2L	15207504	2L_15207504_SNP [dm3] 2L_15207504_SNP [dm6]	C	G	9.262e^-4	0.165	UPSTREAM CR44196 INTERGENIC
2L	15207509	2L_15207509_SNP [dm3] 2L_15207509_SNP [dm6]	T	G	9.262e^-4	0.165	UPSTREAM CR44196 INTERGENIC
2L	15210243	2L_15210243_SNP [dm3] 2L_15210243_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	15210342	2L_15210342_SNP [dm3] 2L_15210342_SNP [dm6]	C	G	9.262e^-4	0.165	INTERGENIC
2L	15210343	2L_15210343_SNP [dm3] 2L_15210343_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC
2L	15295597	2L_15295597_SNP [dm3] 2L_15295597_SNP [dm6]	C	A	9.262e^-4	0.165	DOWNSTREAM CR43764 INTERGENIC
2L	15295643	2L_15295643_SNP [dm3] 2L_15295643_SNP [dm6]	A	G	9.262e^-4	0.165	EXON CR43764
2L	15295646	2L_15295646_SNP [dm3] 2L_15295646_SNP [dm6]	C	T	9.262e^-4	0.165	EXON CR43764
2L	15316083	2L_15316083_SNP [dm3] 2L_15316083_SNP [dm6]	G	A	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	15331768	2L_15331768_SNP [dm3] 2L_15331768_SNP [dm6]	C	A	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15331817	2L_15331817_SNP [dm3] 2L_15331817_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15377755	2L_15377755_SNP [dm3] 2L_15377755_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC
2L	15382939	2L_15382939_SNP [dm3] 2L_15382939_SNP [dm6]	C	G	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_inv
2L	15383287	2L_15383287_SNP [dm3] 2L_15383287_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1539732	2L_1539732_SNP [dm3] 2L_1539732_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC
2L	15499537	2L_15499537_DEL [dm3] 2L_15499537_DEL [dm6]	TAGCTGGTTCCAT...	T	9.262e^-4	0.165	INTRON lace	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15509449	2L_15509449_DEL [dm3] 2L_15509449_DEL [dm6]	AA	A	9.262e^-4	0.165	INTERGENIC
2L	15510221	2L_15510221_SNP [dm3] 2L_15510221_SNP [dm6]	G	A	9.262e^-4	0.165	INTERGENIC
2L	15560892	2L_15560892_SNP [dm3] 2L_15560892_SNP [dm6]	T	A	9.262e^-4	0.165	INTRON kek3
2L	15732021	2L_15732021_INS [dm3] 2L_15732021_INS [dm6]	A	ATT	9.262e^-4	0.165	UPSTREAM CycE INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	15738106	2L_15738106_SNP [dm3] 2L_15738106_SNP [dm6]	A	C	9.262e^-4	0.165	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15738109	2L_15738109_SNP [dm3] 2L_15738109_SNP [dm6]	G	C	9.262e^-4	0.165	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15739598	2L_15739598_SNP [dm3] 2L_15739598_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15742384	2L_15742384_SNP [dm3] 2L_15742384_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15774911	2L_15774911_SNP [dm3] 2L_15774911_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC
2L	15794319	2L_15794319_SNP [dm3] 2L_15794319_SNP [dm6]	A	T	9.262e^-4	0.165	INTERGENIC
2L	1600732	2L_1600732_SNP [dm3] 2L_1600732_SNP [dm6]	C	G	9.262e^-4	0.165	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16042004	2L_16042004_SNP [dm3] 2L_16042004_SNP [dm6]	T	G	9.262e^-4	0.165	UPSTREAM BicC & 1 other DOWNSTREAM beat-Ic INTERGENIC
2L	16052104	2L_16052104_SNP [dm3] 2L_16052104_SNP [dm6]	A	C	9.262e^-4	0.165	INTRON beat-Ia
2L	1613832	2L_1613832_SNP [dm3] 2L_1613832_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON RFeSP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1614268	2L_1614268_SNP [dm3] 2L_1614268_SNP [dm6]	T	C	9.262e^-4	0.165	UPSTREAM RFeSP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2L	1614337	2L_1614337_SNP [dm3] 2L_1614337_SNP [dm6]	C	A	9.262e^-4	0.165	UPSTREAM RFeSP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2L	16223629	2L_16223629_SNP [dm3] 2L_16223629_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	1623758	2L_1623758_SNP [dm3] 2L_1623758_SNP [dm6]	G	A	9.262e^-4	0.165	UPSTREAM CR44603 EXON CR44603
2L	1623763	2L_1623763_SNP [dm3] 2L_1623763_SNP [dm6]	G	A	9.262e^-4	0.165	UPSTREAM CR44603 EXON CR44603
2L	1623889	2L_1623889_SNP [dm3] 2L_1623889_SNP [dm6]	T	C	9.262e^-4	0.165	UPSTREAM CR44603 EXON CR44603
2L	16257298	2L_16257298_SNP [dm3] 2L_16257298_SNP [dm6]	T	C	9.262e^-4	0.165	UTR_5_PRIME PRL-1 UPSTREAM EndoGI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_zfh1
2L	16257314	2L_16257314_SNP [dm3] 2L_16257314_SNP [dm6]	G	C	9.262e^-4	0.165	UTR_5_PRIME PRL-1 UPSTREAM EndoGI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_zfh1
2L	16258257	2L_16258257_SNP [dm3] 2L_16258257_SNP [dm6]	C	T	9.262e^-4	0.165	SYNONYMOUS_CODING EndoGI UPSTREAM PRL-1	TF binding site BDTNP1_TFBS_dl
2L	16366563	2L_16366563_SNP [dm3] 2L_16366563_SNP [dm6]	A	T	9.262e^-4	0.165	SYNONYMOUS_CODING jhamt
2L	16367916	2L_16367916_SNP [dm3] 2L_16367916_SNP [dm6]	G	A	9.262e^-4	0.165	DOWNSTREAM jhamt INTERGENIC
2L	16373992	2L_16373992_SNP [dm3] 2L_16373992_SNP [dm6]	A	T	9.262e^-4	0.165	INTERGENIC
2L	16383795	2L_16383795_SNP [dm3] 2L_16383795_SNP [dm6]	A	T	9.262e^-4	0.165	INTERGENIC
2L	16397262	2L_16397262_SNP [dm3] 2L_16397262_SNP [dm6]	C	G	9.262e^-4	0.165	INTERGENIC
2L	16398501	2L_16398501_SNP [dm3] 2L_16398501_SNP [dm6]	C	A	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	16398563	2L_16398563_SNP [dm3] 2L_16398563_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	16398575	2L_16398575_INS [dm3] 2L_16398575_INS [dm6]	C	CAA	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	16398578	2L_16398578_SNP [dm3] 2L_16398578_SNP [dm6]	A	T	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	16398598	2L_16398598_SNP [dm3] 2L_16398598_SNP [dm6]	A	T	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	16398600	2L_16398600_SNP [dm3] 2L_16398600_SNP [dm6]	A	T	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	16398607	2L_16398607_SNP [dm3] 2L_16398607_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	16398611	2L_16398611_SNP [dm3] 2L_16398611_SNP [dm6]	T	A	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	16398633	2L_16398633_SNP [dm3] 2L_16398633_SNP [dm6]	G	A	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16398635	2L_16398635_SNP [dm3] 2L_16398635_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16398637	2L_16398637_SNP [dm3] 2L_16398637_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16402744	2L_16402744_SNP [dm3] 2L_16402744_SNP [dm6]	C	A	9.262e^-4	0.165	INTRON CG5888
2L	16412268	2L_16412268_SNP [dm3] 2L_16412268_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	16470991	2L_16470991_SNP [dm3] 2L_16470991_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON dac	regulatory region REDfly_CRMs
2L	16490209	2L_16490209_SNP [dm3] 2L_16490209_SNP [dm6]	C	A	9.262e^-4	0.165	DOWNSTREAM CR44994 & 1 other INTERGENIC
2L	16491008	2L_16491008_SNP [dm3] 2L_16491008_SNP [dm6]	G	A	9.262e^-4	0.165	UPSTREAM Tpr2 & 1 other DOWNSTREAM CG4580 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Ubx
2L	16491163	2L_16491163_SNP [dm3] 2L_16491163_SNP [dm6]	G	A	9.262e^-4	0.165	UPSTREAM Tpr2 & 1 other DOWNSTREAM CG4580 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_Ubx
2L	16491191	2L_16491191_SNP [dm3] 2L_16491191_SNP [dm6]	T	A	9.262e^-4	0.165	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_Ubx
2L	16491280	2L_16491280_SNP [dm3] 2L_16491280_SNP [dm6]	T	G	9.262e^-4	0.165	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
2L	16491348	2L_16491348_SNP [dm3] 2L_16491348_SNP [dm6]	G	T	9.262e^-4	0.165	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
2L	16491393	2L_16491393_SNP [dm3] 2L_16491393_SNP [dm6]	A	G	9.262e^-4	0.165	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
2L	16493827	2L_16493827_SNP [dm3] 2L_16493827_SNP [dm6]	A	T	9.262e^-4	0.165	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA
2L	16494524	2L_16494524_SNP [dm3] 2L_16494524_SNP [dm6]	T	G	9.262e^-4	0.165	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16494527	2L_16494527_SNP [dm3] 2L_16494527_SNP [dm6]	G	T	9.262e^-4	0.165	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16494529	2L_16494529_SNP [dm3] 2L_16494529_SNP [dm6]	A	T	9.262e^-4	0.165	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16502316	2L_16502316_SNP [dm3] 2L_16502316_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON Tpr2
2L	16557753	2L_16557753_SNP [dm3] 2L_16557753_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON CG42389
2L	16558327	2L_16558327_SNP [dm3] 2L_16558327_SNP [dm6]	A	G	9.262e^-4	0.165	NON_SYNONYMOUS_CODING CG42389	TF binding site mE1_TFBS_cad
2L	16566106	2L_16566106_SNP [dm3] 2L_16566106_SNP [dm6]	A	C	9.262e^-4	0.165	INTRON CG42389
2L	16566107	2L_16566107_SNP [dm3] 2L_16566107_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON CG42389
2L	16566131	2L_16566131_SNP [dm3] 2L_16566131_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON CG42389
2L	16572410	2L_16572410_INS [dm3] 2L_16572410_INS [dm6]	T	TGA	9.262e^-4	0.165	INTRON CG42389
2L	16572413	2L_16572413_INS [dm3] 2L_16572413_INS [dm6]	C	ATG	9.262e^-4	0.165	INTRON CG42389
2L	1658964	2L_1658964_SNP [dm3] 2L_1658964_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON chinmo	TF binding site mE1_TFBS_Trl
2L	16609989	2L_16609989_SNP [dm3] 2L_16609989_SNP [dm6]	G	C	9.262e^-4	0.165	UTR_3_PRIME CG4631 INTRON CG42389
2L	1661401	2L_1661401_DEL [dm3] 2L_1661401_DEL [dm6]	CCC	A	9.262e^-4	0.165	INTRON chinmo
2L	16647346	2L_16647346_SNP [dm3] 2L_16647346_SNP [dm6]	A	T	9.262e^-4	0.165	INTRON CG42389
2L	16648075	2L_16648075_SNP [dm3] 2L_16648075_SNP [dm6]	G	T	9.262e^-4	0.165	INTRON CG42389
2L	16653701	2L_16653701_SNP [dm3] 2L_16653701_SNP [dm6]	G	A	9.262e^-4	0.165	INTRON CG42389	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16696094	2L_16696094_SNP [dm3] 2L_16696094_SNP [dm6]	C	A	9.262e^-4	0.165	INTRON grp	TF binding site BDTNP1_TFBS_twi
2L	16730942	2L_16730942_SNP [dm3] 2L_16730942_SNP [dm6]	G	C	9.262e^-4	0.165	NON_SYNONYMOUS_CODING CG17996 UTR_3_PRIME CG31812 DOWNSTREAM Prosbeta4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2L	16730961	2L_16730961_SNP [dm3] 2L_16730961_SNP [dm6]	A	G	9.262e^-4	0.165	UTR_5_PRIME CG17996 UTR_3_PRIME CG31812 DOWNSTREAM Prosbeta4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2L	16735689	2L_16735689_SNP [dm3] 2L_16735689_SNP [dm6]	G	A	9.262e^-4	0.165	SYNONYMOUS_CODING glu
2L	16752189	2L_16752189_SNP [dm3] 2L_16752189_SNP [dm6]	A	T	9.262e^-4	0.165	UTR_3_PRIME CG17912 DOWNSTREAM CG17912
2L	16752195	2L_16752195_SNP [dm3] 2L_16752195_SNP [dm6]	T	C	9.262e^-4	0.165	UTR_3_PRIME CG17912 DOWNSTREAM CG17912
2L	16755350	2L_16755350_SNP [dm3] 2L_16755350_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON yellow-b
2L	16772406	2L_16772406_SNP [dm3] 2L_16772406_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON Mhc
2L	16772410	2L_16772410_SNP [dm3] 2L_16772410_SNP [dm6]	T	A	9.262e^-4	0.165	INTRON Mhc
2L	16778342	2L_16778342_SNP [dm3] 2L_16778342_SNP [dm6]	A	C	9.262e^-4	0.165	INTRON Mhc
2L	16778453	2L_16778453_SNP [dm3] 2L_16778453_SNP [dm6]	C	T	9.262e^-4	0.165	SYNONYMOUS_CODING Mhc INTRON Mhc
2L	16783464	2L_16783464_SNP [dm3] 2L_16783464_SNP [dm6]	G	T	9.262e^-4	0.165	SYNONYMOUS_CODING Mhc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16795487	2L_16795487_SNP [dm3] 2L_16795487_SNP [dm6]	G	A	9.262e^-4	0.165	NON_SYNONYMOUS_CODING Ugt36Ba
2L	16797044	2L_16797044_SNP [dm3] 2L_16797044_SNP [dm6]	C	T	9.262e^-4	0.165	SYNONYMOUS_CODING Ugt36Bb
2L	16797988	2L_16797988_SNP [dm3] 2L_16797988_SNP [dm6]	T	C	9.262e^-4	0.165	SYNONYMOUS_CODING Ugt36Bb
2L	16801686	2L_16801686_INS [dm3] 2L_16801686_INS [dm6]	C	CGCC	9.262e^-4	0.165	DOWNSTREAM CG13280 & 1 other INTERGENIC
2L	16801791	2L_16801791_SNP [dm3] 2L_16801791_SNP [dm6]	C	G	9.262e^-4	0.165	DOWNSTREAM CG13280 & 1 other INTERGENIC
2L	16803492	2L_16803492_SNP [dm3] 2L_16803492_SNP [dm6]	A	T	9.262e^-4	0.165	NON_SYNONYMOUS_CODING CG13280	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	16803964	2L_16803964_SNP [dm3] 2L_16803964_SNP [dm6]	C	T	9.262e^-4	0.165	UTR_5_PRIME CG13280 UPSTREAM CG13272 INTRON CG13280
2L	16804006	2L_16804006_SNP [dm3] 2L_16804006_SNP [dm6]	C	A	9.262e^-4	0.165	UTR_5_PRIME CG13280 UPSTREAM CG13272 INTRON CG13280
2L	16804548	2L_16804548_SNP [dm3] 2L_16804548_SNP [dm6]	T	A	9.262e^-4	0.165	UPSTREAM CG13272 & 1 other INTRON CG13280
2L	16806325	2L_16806325_SNP [dm3] 2L_16806325_SNP [dm6]	T	C	9.262e^-4	0.165	UPSTREAM CG13272 INTRON CG13280 & 1 other
2L	16806433	2L_16806433_SNP [dm3] 2L_16806433_SNP [dm6]	C	T	9.262e^-4	0.165	UPSTREAM CG13272 INTRON CG13280 & 1 other
2L	16935057	2L_16935057_SNP [dm3] 2L_16935057_SNP [dm6]	G	C	9.262e^-4	0.165	INTERGENIC
2L	16935912	2L_16935912_SNP [dm3] 2L_16935912_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC
2L	16992544	2L_16992544_SNP [dm3] 2L_16992544_SNP [dm6]	T	A	9.262e^-4	0.165	INTRON beat-IIIb
2L	16994551	2L_16994551_SNP [dm3] 2L_16994551_SNP [dm6]	T	C	9.262e^-4	0.165	DOWNSTREAM beat-IIIb INTERGENIC
2L	1707979	2L_1707979_SNP [dm3] 2L_1707979_SNP [dm6]	G	C	9.262e^-4	0.165	SYNONYMOUS_CODING CG17660 UPSTREAM CR44976	TF binding site mE1_TFBS_cad
2L	17092373	2L_17092373_SNP [dm3] 2L_17092373_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	17105222	2L_17105222_SNP [dm3] 2L_17105222_SNP [dm6]	C	G	9.262e^-4	0.165	EXON CR45448
2L	1712136	2L_1712136_SNP [dm3] 2L_1712136_SNP [dm6]	T	A	9.262e^-4	0.165	DOWNSTREAM mRpL48 INTRON frtz	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1718414	2L_1718414_SNP [dm3] 2L_1718414_SNP [dm6]	A	T	9.262e^-4	0.165	SPLICE_SITE_REGION Rim2 INTRON Rim2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17203711	2L_17203711_SNP [dm3] 2L_17203711_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON beat-IIIc
2L	17207653	2L_17207653_SNP [dm3] 2L_17207653_SNP [dm6]	A	T	9.262e^-4	0.165	INTRON beat-IIIc
2L	17209765	2L_17209765_SNP [dm3] 2L_17209765_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON beat-IIIc
2L	17209772	2L_17209772_SNP [dm3] 2L_17209772_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON beat-IIIc
2L	17209775	2L_17209775_SNP [dm3] 2L_17209775_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON beat-IIIc
2L	17269253	2L_17269253_SNP [dm3] 2L_17269253_SNP [dm6]	A	T	9.262e^-4	0.165	INTERGENIC
2L	17271189	2L_17271189_SNP [dm3] 2L_17271189_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC
2L	17271448	2L_17271448_SNP [dm3] 2L_17271448_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	17271461	2L_17271461_INS [dm3] 2L_17271461_INS [dm6]	T	TAAATGGAAAATAAGGTTTT...	9.262e^-4	0.165	INTERGENIC
2L	17271541	2L_17271541_SNP [dm3] 2L_17271541_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	17283150	2L_17283150_SNP [dm3] 2L_17283150_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC
2L	17283272	2L_17283272_SNP [dm3] 2L_17283272_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC
2L	17284003	2L_17284003_SNP [dm3] 2L_17284003_SNP [dm6]	A	C	9.262e^-4	0.165	INTERGENIC
2L	17284007	2L_17284007_SNP [dm3] 2L_17284007_SNP [dm6]	T	G	9.262e^-4	0.165	INTERGENIC
2L	17297347	2L_17297347_DEL [dm3] 2L_17297347_DEL [dm6]	TTTTCCGCTAT...	T	9.262e^-4	0.165	INTERGENIC
2L	17302549	2L_17302549_SNP [dm3] 2L_17302549_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17347738	2L_17347738_SNP [dm3] 2L_17347738_SNP [dm6]	G	T	9.262e^-4	0.165	INTERGENIC
2L	17351368	2L_17351368_SNP [dm3] 2L_17351368_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17351385	2L_17351385_SNP [dm3] 2L_17351385_SNP [dm6]	T	C	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17351416	2L_17351416_SNP [dm3] 2L_17351416_SNP [dm6]	T	A	9.262e^-4	0.165	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17381455	2L_17381455_SNP [dm3] 2L_17381455_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON Lrch	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17385461	2L_17385461_SNP [dm3] 2L_17385461_SNP [dm6]	A	G	9.262e^-4	0.165	UTR_5_PRIME CLIP-190 UPSTREAM CLIP-190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
2L	17385515	2L_17385515_SNP [dm3] 2L_17385515_SNP [dm6]	T	A	9.262e^-4	0.165	UPSTREAM CLIP-190 INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
2L	17391523	2L_17391523_SNP [dm3] 2L_17391523_SNP [dm6]	C	A	9.262e^-4	0.165	INTRON CLIP-190
2L	17399733	2L_17399733_SNP [dm3] 2L_17399733_SNP [dm6]	C	T	9.262e^-4	0.165	INTRON CLIP-190
2L	17402962	2L_17402962_DEL [dm3] 2L_17402962_DEL [dm6]	CTCGTTTTC	C	9.262e^-4	0.165	DOWNSTREAM CLIP-190 INTRON CLIP-190	TF binding site mE1_TFBS_HSA
2L	17485391	2L_17485391_SNP [dm3] 2L_17485391_SNP [dm6]	T	C	9.262e^-4	0.165	SYNONYMOUS_CODING CG5131 UPSTREAM CG43221 & 1 other	TF binding site mE1_TFBS_cad
2L	17505590	2L_17505590_SNP [dm3] 2L_17505590_SNP [dm6]	T	C	9.262e^-4	0.165	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17509687	2L_17509687_SNP [dm3] 2L_17509687_SNP [dm6]	T	C	9.262e^-4	0.165	SYNONYMOUS_CODING Dhc36C
2L	17509918	2L_17509918_SNP [dm3] 2L_17509918_SNP [dm6]	C	T	9.262e^-4	0.165	SYNONYMOUS_CODING Dhc36C
2L	17695380	2L_17695380_SNP [dm3] 2L_17695380_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON CadN
2L	17695619	2L_17695619_SNP [dm3] 2L_17695619_SNP [dm6]	A	T	9.262e^-4	0.165	INTRON CadN
2L	17764438	2L_17764438_SNP [dm3] 2L_17764438_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON CadN	TF binding site mE1_TFBS_HSA
2L	17764442	2L_17764442_SNP [dm3] 2L_17764442_SNP [dm6]	A	C	9.262e^-4	0.165	INTRON CadN	TF binding site mE1_TFBS_HSA
2L	17766202	2L_17766202_SNP [dm3] 2L_17766202_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON CadN
2L	17766205	2L_17766205_INS [dm3] 2L_17766205_INS [dm6]	C	CACAAGGGC	9.262e^-4	0.165	INTRON CadN
2L	17766234	2L_17766234_SNP [dm3] 2L_17766234_SNP [dm6]	G	C	9.262e^-4	0.165	INTRON CadN
2L	17766238	2L_17766238_SNP [dm3] 2L_17766238_SNP [dm6]	T	C	9.262e^-4	0.165	INTRON CadN
2L	17774825	2L_17774825_SNP [dm3] 2L_17774825_SNP [dm6]	G	C	9.262e^-4	0.165	INTRON CadN
2L	17786896	2L_17786896_SNP [dm3] 2L_17786896_SNP [dm6]	A	G	9.262e^-4	0.165	DOWNSTREAM CadN2 INTERGENIC
2L	17874854	2L_17874854_SNP [dm3] 2L_17874854_SNP [dm6]	A	G	9.262e^-4	0.165	INTRON CadN2
2L	17879440	2L_17879440_SNP [dm3] 2L_17879440_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	18092544	2L_18092544_SNP [dm3] 2L_18092544_SNP [dm6]	A	T	9.262e^-4	0.165	UPSTREAM CG15153 INTERGENIC
2L	18097777	2L_18097777_SNP [dm3] 2L_18097777_SNP [dm6]	C	A	9.262e^-4	0.165	SYNONYMOUS_CODING CG5755
2L	18100621	2L_18100621_SNP [dm3] 2L_18100621_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC
2L	18100626	2L_18100626_SNP [dm3] 2L_18100626_SNP [dm6]	C	T	9.262e^-4	0.165	INTERGENIC
2L	18100634	2L_18100634_SNP [dm3] 2L_18100634_SNP [dm6]	G	T	9.262e^-4	0.165	INTERGENIC
2L	18100677	2L_18100677_SNP [dm3] 2L_18100677_SNP [dm6]	A	G	9.262e^-4	0.165	INTERGENIC
2L	18103317	2L_18103317_SNP [dm3] 2L_18103317_SNP [dm6]	C	A	9.262e^-4	0.165	INTERGENIC

By genomic position
Variant impact
Gene name

Sex_Estimate_M phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results