DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.116e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.07655
In_3R_Mo	0.01570

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	5.0927	0.0784

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1840 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	6279531	X_6279531_SNP [dm3] X_6385498_SNP [dm6]	C	A	1.802e^-6	0.889	DOWNSTREAM CG33664 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7262487	3L_7262487_SNP [dm3] 3L_7269387_SNP [dm6]	T	C	2.255e^-6	0.889	SYNONYMOUS_CODING unc-13-4A
3R	21411791	3R_21411791_SNP [dm3] 3R_25586069_SNP [dm6]	A	G	2.371e^-6	0.889	INTRON msi
2R	5922545	2R_5922545_SNP [dm3] 2R_10035040_SNP [dm6]	T	C	2.574e^-6	0.889	UTR_3_PRIME oys DOWNSTREAM oys & 1 other
3L	4058820	3L_4058820_SNP [dm3] 3L_4058820_SNP [dm6]	G	A	4.425e^-6	0.889	UTR_3_PRIME CG1136 UPSTREAM CG18869	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	4058824	3L_4058824_SNP [dm3] 3L_4058824_SNP [dm6]	C	G	5.242e^-6	0.889	UTR_3_PRIME CG1136 UPSTREAM CG18869	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	7850167	3L_7850167_SNP [dm3] 3L_7857067_SNP [dm6]	T	C	5.979e^-6	0.889	INTRON Pdp1
3L	11066185	3L_11066185_SNP [dm3] 3L_11073085_SNP [dm6]	A	C	6.426e^-6	0.889	SYNONYMOUS_CODING Mocs1 UTR_3_PRIME Mocs1 DOWNSTREAM l_3_01239
2L	18478975	2L_18478975_SNP [dm3] 2L_18478975_SNP [dm6]	T	A	9.440e^-6	0.889	INTRON CG10283
X	6178024	X_6178024_SNP [dm3] X_6283991_SNP [dm6]	A	T	1.189e^-5	0.889	UPSTREAM CG11700 DOWNSTREAM Top3beta INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9515685	3L_9515685_SNP [dm3] 3L_9522585_SNP [dm6]	T	A	1.217e^-5	0.889	INTRON CG33700
X	10762966	X_10762966_SNP [dm3] X_10868933_SNP [dm6]	G	C	1.283e^-5	0.889	UPSTREAM CG2157 INTERGENIC
2R	13495769	2R_13495769_SNP [dm3] 2R_17608264_SNP [dm6]	C	A	1.294e^-5	0.889	NON_SYNONYMOUS_CODING CG10936
2R	19467392	2R_19467392_SNP [dm3] 2R_23579869_SNP [dm6]	C	G	1.352e^-5	0.889	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12593459	3L_12593459_SNP [dm3] 3L_12600359_SNP [dm6]	A	G	1.409e^-5	0.889	INTERGENIC
3L	7262523	3L_7262523_SNP [dm3] 3L_7269423_SNP [dm6]	T	G	1.450e^-5	0.889	SYNONYMOUS_CODING unc-13-4A
X	8412262	X_8412262_SNP [dm3] X_8518229_SNP [dm6]	A	T	1.500e^-5	0.889	UTR_5_PRIME Nrg INTRON Nrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	7262457	3L_7262457_SNP [dm3] 3L_7269357_SNP [dm6]	A	G	1.510e^-5	0.889	SYNONYMOUS_CODING unc-13-4A
3L	1579412	3L_1579412_SNP [dm3] 3L_1579412_SNP [dm6]	A	G	1.620e^-5	0.889	INTRON CG13917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	2805612	X_2805612_SNP [dm3] X_2911579_SNP [dm6]	A	G	1.655e^-5	0.889	INTRON kirre
2L	3839581	2L_3839581_SNP [dm3] 2L_3839581_SNP [dm6]	G	T	1.828e^-5	0.889	DOWNSTREAM slp2 INTERGENIC	regulatory region REDfly_CRMs
X	6282327	X_6282327_SNP [dm3] X_6388294_SNP [dm6]	T	A	1.872e^-5	0.889	INTERGENIC
X	6282330	X_6282330_INS [dm3] X_6388297_INS [dm6]	C	CGC	1.872e^-5	0.889	INTERGENIC
3L	12085200	3L_12085200_SNP [dm3] 3L_12092100_SNP [dm6]	C	T	2.108e^-5	0.889	INTERGENIC
2L	18911883	2L_18911883_SNP [dm3] 2L_18911883_SNP [dm6]	T	C	2.238e^-5	0.889	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10260360	3L_10260360_SNP [dm3] 3L_10267260_SNP [dm6]	A	T	2.280e^-5	0.889	UPSTREAM can INTERGENIC	regulatory region REDfly_CRMs
2R	19488140	2R_19488140_SNP [dm3] 2R_23600617_SNP [dm6]	T	C	2.323e^-5	0.889	NON_SYNONYMOUS_CODING CG42559 UTR_5_PRIME CG42560 UPSTREAM CG42560 DOWNSTREAM CG10332 & 1 other
2R	5917094	2R_5917094_SNP [dm3] 2R_10029589_SNP [dm6]	A	G	2.359e^-5	0.889	UTR_3_PRIME CG12128 & 1 other DOWNSTREAM CG1407 INTRON CG1407
2R	5918755	2R_5918755_SNP [dm3] 2R_10031250_SNP [dm6]	C	T	2.359e^-5	0.889	DOWNSTREAM CG12128 INTRON CG1407	TF binding site mE1_TFBS_sens
2L	6873407	2L_6873407_SNP [dm3] 2L_6873407_SNP [dm6]	A	G	2.471e^-5	0.889	UPSTREAM CR44915 EXON CR44914
3L	12586048	3L_12586048_SNP [dm3] 3L_12592948_SNP [dm6]	T	C	2.628e^-5	0.889	INTRON ara	TF binding site mE1_TFBS_HSA
3L	9559466	3L_9559466_SNP [dm3] 3L_9566366_SNP [dm6]	G	T	2.743e^-5	0.889	INTRON CG42673
3R	4355699	3R_4355699_SNP [dm3] 3R_8529977_SNP [dm6]	G	A	2.748e^-5	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	11595653	2R_11595653_DEL [dm3] 2R_15708148_DEL [dm6]	TT	T	2.845e^-5	0.889	INTERGENIC
3L	9382339	3L_9382339_SNP [dm3] 3L_9389239_SNP [dm6]	A	G	2.860e^-5	0.889	INTRON CG4080	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	12232812	3L_12232812_SNP [dm3] 3L_12239712_SNP [dm6]	C	T	2.990e^-5	0.889	INTRON app
2R	5919120	2R_5919120_SNP [dm3] 2R_10031615_SNP [dm6]	G	A	3.136e^-5	0.889	SYNONYMOUS_CODING CG1407 DOWNSTREAM CG12128	TF binding site mE1_TFBS_sens
2R	5918688	2R_5918688_SNP [dm3] 2R_10031183_SNP [dm6]	G	A	3.198e^-5	0.889	SYNONYMOUS_CODING CG1407 UTR_3_PRIME CG1407 DOWNSTREAM CG12128	TF binding site mE1_TFBS_sens
2R	5922493	2R_5922493_SNP [dm3] 2R_10034988_SNP [dm6]	G	A	3.198e^-5	0.889	UTR_3_PRIME oys DOWNSTREAM oys & 1 other
2R	8676392	2R_8676392_SNP [dm3] 2R_12788887_SNP [dm6]	C	G	3.203e^-5	0.889	INTRON sca EXON CR45137
2R	16251861	2R_16251861_MNP [dm3] 2R_20364356_MNP [dm6]	ATC	TGT	3.401e^-5	0.889	INTERGENIC
2R	16251872	2R_16251872_SNP [dm3] 2R_20364367_SNP [dm6]	C	T	3.401e^-5	0.889	INTERGENIC
X	15008747	X_15008747_SNP [dm3] X_15114714_SNP [dm6]	T	C	3.476e^-5	0.889	SYNONYMOUS_CODING Cyp4s3 DOWNSTREAM Rab3-GEF
2L	9048259	2L_9048259_SNP [dm3] 2L_9048259_SNP [dm6]	A	G	3.615e^-5	0.889	INTERGENIC
2R	9430716	2R_9430716_SNP [dm3] 2R_13543211_SNP [dm6]	C	T	3.628e^-5	0.889	INTRON CG6145
2R	3788496	2R_3788496_SNP [dm3] 2R_7900991_SNP [dm6]	C	G	3.693e^-5	0.889	NON_SYNONYMOUS_CODING CG30377	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	7093980	3L_7093980_SNP [dm3] 3L_7100880_SNP [dm6]	G	A	3.767e^-5	0.889	INTRON form3
2L	2801054	2L_2801054_SNP [dm3] 2L_2801054_SNP [dm6]	C	G	3.975e^-5	0.889	INTERGENIC
3L	9560795	3L_9560795_SNP [dm3] 3L_9567695_SNP [dm6]	A	C	4.048e^-5	0.889	INTRON CG42673
3R	22896116	3R_22896116_SNP [dm3] 3R_27070394_SNP [dm6]	A	G	4.086e^-5	0.889	UPSTREAM spz INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	18817936	3L_18817936_SNP [dm3] 3L_18824836_SNP [dm6]	A	G	4.131e^-5	0.889	INTRON Cat
3L	6544416	3L_6544416_SNP [dm3] 3L_6551316_SNP [dm6]	C	G	4.185e^-5	0.889	START_GAINED CG18769 UTR_5_PRIME CG18769 INTRON CG18769	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	19074021	2L_19074021_SNP [dm3] 2L_19074021_SNP [dm6]	A	G	4.240e^-5	0.889	NON_SYNONYMOUS_CODING CG17572 DOWNSTREAM CR33315	TF binding site BDTNP1_TFBS_dl
2R	12030091	2R_12030091_SNP [dm3] 2R_16142586_SNP [dm6]	A	G	4.248e^-5	0.889	SYNONYMOUS_CODING CG30094 UPSTREAM Aats-cys DOWNSTREAM Got1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	20406585	2R_20406585_SNP [dm3] 2R_24519062_SNP [dm6]	T	A	4.351e^-5	0.889	UPSTREAM Ir60d EXON Ir60c
3R	4211693	3R_4211693_SNP [dm3] 3R_8385971_SNP [dm6]	T	C	4.400e^-5	0.889	SYNONYMOUS_CODING CG45263 INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3575256	3R_3575256_SNP [dm3] 3R_7749534_SNP [dm6]	T	C	4.417e^-5	0.889	INTRON pyd3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4962984	2L_4962984_SNP [dm3] 2L_4962984_SNP [dm6]	G	A	4.435e^-5	0.889	SYNONYMOUS_CODING CG34124 DOWNSTREAM CR43824	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	20487408	3L_20487408_SNP [dm3] 3L_20494308_SNP [dm6]	T	C	4.448e^-5	0.889	UPSTREAM ZnT77C INTRON ZnT77C & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16073034	2R_16073034_SNP [dm3] 2R_20185529_SNP [dm6]	A	G	4.584e^-5	0.889	INTERGENIC
2L	16995760	2L_16995760_SNP [dm3] 2L_16995760_SNP [dm6]	T	A	4.605e^-5	0.889	INTERGENIC
3L	3882173	3L_3882173_INS [dm3] 3L_3882173_INS [dm6]	A	ATA	4.670e^-5	0.889	INTERGENIC
3R	4514342	3R_4514342_SNP [dm3] 3R_8688620_SNP [dm6]	C	T	4.765e^-5	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15014920	2L_15014920_SNP [dm3] 2L_15014920_SNP [dm6]	A	C	4.772e^-5	0.889	INTERGENIC
2R	9544444	2R_9544444_SNP [dm3] 2R_13656939_SNP [dm6]	T	A	4.782e^-5	0.889	INTRON fas
2R	13181332	2R_13181332_SNP [dm3] 2R_17293827_SNP [dm6]	T	C	4.805e^-5	0.889	INTRON mbl
3L	7093982	3L_7093982_SNP [dm3] 3L_7100882_SNP [dm6]	A	C	4.957e^-5	0.889	INTRON form3
3L	4426717	3L_4426717_SNP [dm3] 3L_4426717_SNP [dm6]	A	T	4.996e^-5	0.889	DOWNSTREAM CG15020 INTERGENIC
2R	19870822	2R_19870822_SNP [dm3] 2R_23983299_SNP [dm6]	G	C	5.349e^-5	0.889	INTRON Sox14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	16237342	3L_16237342_DEL [dm3] 3L_16244242_DEL [dm6]	CTGGCACACA	C	5.501e^-5	0.889	INTERGENIC
3L	3499240	3L_3499240_SNP [dm3] 3L_3499240_SNP [dm6]	G	T	5.521e^-5	0.889	INTRON CG42324
2L	2853301	2L_2853301_SNP [dm3] 2L_2853301_SNP [dm6]	G	A	5.591e^-5	0.889	UTR_5_PRIME CG3104
3L	4058896	3L_4058896_DEL [dm3] 3L_4058896_DEL [dm6]	AAATTAATATAATATTTATG...	A	5.624e^-5	0.889	UTR_3_PRIME CG1136 UPSTREAM CG18869	TF binding site mE1_TFBS_chinmo
3R	4279607	3R_4279607_SNP [dm3] 3R_8453885_SNP [dm6]	C	G	5.767e^-5	0.889	INTRON CG45263
3R	26265815	3R_26265815_SNP [dm3] 3R_30440093_SNP [dm6]	T	C	5.783e^-5	0.889	INTRON CG15537
3R	26265816	3R_26265816_SNP [dm3] 3R_30440094_SNP [dm6]	G	A	5.783e^-5	0.889	INTRON CG15537
3L	3206770	3L_3206770_SNP [dm3] 3L_3206770_SNP [dm6]	C	A	5.786e^-5	0.889	UPSTREAM CG33160 DOWNSTREAM CG32270 & 1 other INTRON gry
X	15008387	X_15008387_SNP [dm3] X_15114354_SNP [dm6]	T	C	5.913e^-5	0.889	DOWNSTREAM Rab3-GEF INTRON Cyp4s3
X	15008442	X_15008442_SNP [dm3] X_15114409_SNP [dm6]	G	A	5.913e^-5	0.889	DOWNSTREAM Rab3-GEF INTRON Cyp4s3
X	15008598	X_15008598_SNP [dm3] X_15114565_SNP [dm6]	T	C	5.913e^-5	0.889	DOWNSTREAM Rab3-GEF INTRON Cyp4s3
X	15008658	X_15008658_SNP [dm3] X_15114625_SNP [dm6]	T	G	5.913e^-5	0.889	DOWNSTREAM Rab3-GEF INTRON Cyp4s3
X	15008744	X_15008744_SNP [dm3] X_15114711_SNP [dm6]	G	A	5.913e^-5	0.889	SYNONYMOUS_CODING Cyp4s3 DOWNSTREAM Rab3-GEF
X	15009440	X_15009440_SNP [dm3] X_15115407_SNP [dm6]	G	A	5.913e^-5	0.889	SPLICE_SITE_REGION Cyp4s3 INTRON Cyp4s3
2L	19078968	2L_19078968_SNP [dm3] 2L_19078968_SNP [dm6]	C	T	5.926e^-5	0.889	NON_SYNONYMOUS_CODING CG10700 DOWNSTREAM Lim3
2L	1654316	2L_1654316_SNP [dm3] 2L_1654316_SNP [dm6]	A	C	5.963e^-5	0.889	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14861274	X_14861274_SNP [dm3] X_14967241_SNP [dm6]	G	C	5.988e^-5	0.889	INTRON eag
3R	26265247	3R_26265247_SNP [dm3] 3R_30439525_SNP [dm6]	T	C	6.107e^-5	0.889	INTRON CG15537
2L	10496788	2L_10496788_SNP [dm3] 2L_10496788_SNP [dm6]	A	C	6.179e^-5	0.889	SYNONYMOUS_CODING Myo31DF
3L	10863287	3L_10863287_INS [dm3] 3L_10870187_INS [dm6]	A	ACCA	6.236e^-5	0.889		TF binding site mE1_TFBS_cad
3L	10830028	3L_10830028_INS [dm3] 3L_10836928_INS [dm6]	A	AA	6.261e^-5	0.889	INTERGENIC
2L	19843808	2L_19843808_SNP [dm3] 2L_19843808_SNP [dm6]	T	C	6.367e^-5	0.889	INTRON sick
3L	9672927	3L_9672927_SNP [dm3] 3L_9679827_SNP [dm6]	C	T	6.483e^-5	0.889	UPSTREAM fry INTRON CG16717	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_Ubx
2L	4982571	2L_4982571_SNP [dm3] 2L_4982571_SNP [dm6]	T	A	6.534e^-5	0.889	UPSTREAM CG8892 INTRON CG34126
3L	1579141	3L_1579141_SNP [dm3] 3L_1579141_SNP [dm6]	G	A	6.620e^-5	0.889	INTRON CG13917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	7093983	3L_7093983_SNP [dm3] 3L_7100883_SNP [dm6]	T	C	6.710e^-5	0.889	INTRON form3
2R	5923941	2R_5923941_SNP [dm3] 2R_10036436_SNP [dm6]	C	G	6.803e^-5	0.889	UTR_3_PRIME oys
3L	11149915	3L_11149915_SNP [dm3] 3L_11156815_SNP [dm6]	T	G	6.805e^-5	0.889	INTRON CG32082	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9559395	3L_9559395_SNP [dm3] 3L_9566295_SNP [dm6]	G	A	6.805e^-5	0.889	INTRON CG42673
3L	9559420	3L_9559420_SNP [dm3] 3L_9566320_SNP [dm6]	G	T	6.805e^-5	0.889	INTRON CG42673
3L	4059061	3L_4059061_SNP [dm3] 3L_4059061_SNP [dm6]	A	T	6.868e^-5	0.889	UTR_3_PRIME CG1136 UPSTREAM CG18869
2L	4164775	2L_4164775_INS [dm3] 2L_4164775_INS [dm6]	A	AT	6.967e^-5	0.889	INTRON Or24a
3R	16078138	3R_16078138_SNP [dm3] 3R_20252416_SNP [dm6]	G	A	7.080e^-5	0.889	UPSTREAM cic INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2R	13181305	2R_13181305_SNP [dm3] 2R_17293800_SNP [dm6]	G	C	7.146e^-5	0.889	INTRON mbl
3R	26006803	3R_26006803_SNP [dm3] 3R_30181081_SNP [dm6]	T	C	7.252e^-5	0.889	UTR_3_PRIME Bet5 DOWNSTREAM CG15530
3R	24605168	3R_24605168_SNP [dm3] 3R_28779446_SNP [dm6]	G	A	7.281e^-5	0.889	INTERGENIC
X	20251398	X_20251398_SNP [dm3] X_20380371_SNP [dm6]	G	C	7.289e^-5	0.889	INTERGENIC
3R	6508256	3R_6508256_SNP [dm3] 3R_10682534_SNP [dm6]	C	T	7.325e^-5	0.889	UPSTREAM CR44230 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4244308	2R_4244308_SNP [dm3] 2R_8356803_SNP [dm6]	A	G	7.338e^-5	0.889	INTRON pdm3
X	12420803	X_12420803_SNP [dm3] X_12526770_SNP [dm6]	G	C	7.362e^-5	0.889	INTRON CG43921
2R	9519408	2R_9519408_SNP [dm3] 2R_13631903_SNP [dm6]	T	C	7.587e^-5	0.889	INTRON fas
3R	26008529	3R_26008529_DEL [dm3] 3R_30182807_DEL [dm6]	ATAAATTTGGCATAAATCTC...	A	7.869e^-5	0.889	DOWNSTREAM CR44262 INTERGENIC
2R	5908813	2R_5908813_SNP [dm3] 2R_10021308_SNP [dm6]	C	T	8.003e^-5	0.889	INTRON Pka-R2
3L	9672931	3L_9672931_SNP [dm3] 3L_9679831_SNP [dm6]	G	T	8.060e^-5	0.889	UPSTREAM fry INTRON CG16717	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_Ubx
3L	11455584	3L_11455584_DEL [dm3] 3L_11462484_DEL [dm6]	TAG	T	8.084e^-5	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_Med
2R	5918703	2R_5918703_SNP [dm3] 2R_10031198_SNP [dm6]	C	A	8.115e^-5	0.889	SYNONYMOUS_CODING CG1407 UTR_3_PRIME CG1407 DOWNSTREAM CG12128	TF binding site mE1_TFBS_sens
X	20740524	X_20740524_SNP [dm3] X_20869497_SNP [dm6]	T	G	8.400e^-5	0.889	UPSTREAM CG1314 INTRON shakB
2L	6974379	2L_6974379_SNP [dm3] 2L_6974379_SNP [dm6]	T	G	8.422e^-5	0.889	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	5289804	X_5289804_SNP [dm3] X_5395771_SNP [dm6]	A	G	8.464e^-5	0.889	INTRON SK
3R	4355753	3R_4355753_SNP [dm3] 3R_8530031_SNP [dm6]	T	C	8.488e^-5	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19155722	3L_19155722_SNP [dm3] 3L_19162622_SNP [dm6]	C	A	8.517e^-5	0.889	INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	17043454	2R_17043454_SNP [dm3] 2R_21155949_SNP [dm6]	G	A	8.541e^-5	0.889	INTRON CG30389	TF binding site mE1_TFBS_cad
2R	17043455	2R_17043455_SNP [dm3] 2R_21155950_SNP [dm6]	A	G	8.541e^-5	0.889	INTRON CG30389	TF binding site mE1_TFBS_cad
2R	17043480	2R_17043480_SNP [dm3] 2R_21155975_SNP [dm6]	C	A	8.541e^-5	0.889	INTRON CG30389	TF binding site mE1_TFBS_cad
2L	19266256	2L_19266256_SNP [dm3] 2L_19266256_SNP [dm6]	C	T	8.643e^-5	0.889	INTERGENIC
3L	12345774	3L_12345774_SNP [dm3] 3L_12352674_SNP [dm6]	A	T	8.657e^-5	0.889	INTERGENIC
3L	18560829	3L_18560829_SNP [dm3] 3L_18567729_SNP [dm6]	A	T	8.667e^-5	0.889	INTRON AstC-R1
2R	9500674	2R_9500674_SNP [dm3] 2R_13613169_SNP [dm6]	A	G	9.010e^-5	0.889	INTERGENIC
2L	18863158	2L_18863158_INS [dm3] 2L_18863158_INS [dm6]	G	GATGAAG	9.113e^-5	0.889	INTRON tup
3L	10540201	3L_10540201_SNP [dm3] 3L_10547101_SNP [dm6]	C	T	9.124e^-5	0.889	INTRON A2bp1
3L	20259072	3L_20259072_SNP [dm3] 3L_20265972_SNP [dm6]	C	A	9.136e^-5	0.889	NON_SYNONYMOUS_CODING CG32228 DOWNSTREAM rdgC EXON CR43876
X	15314246	X_15314246_SNP [dm3] X_15420213_SNP [dm6]	G	T	9.162e^-5	0.889	UTR_5_PRIME Cngl
2L	6624192	2L_6624192_SNP [dm3] 2L_6624192_SNP [dm6]	T	G	9.198e^-5	0.889	NON_SYNONYMOUS_CODING CG34345 DOWNSTREAM Oatp26F
3L	3883098	3L_3883098_SNP [dm3] 3L_3883098_SNP [dm6]	G	T	9.503e^-5	0.889	INTERGENIC
2R	19467391	2R_19467391_SNP [dm3] 2R_23579868_SNP [dm6]	C	G	9.602e^-5	0.889	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19467401	2R_19467401_SNP [dm3] 2R_23579878_SNP [dm6]	G	C	9.602e^-5	0.889	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19467403	2R_19467403_SNP [dm3] 2R_23579880_SNP [dm6]	A	T	9.602e^-5	0.889	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2310398	3L_2310398_SNP [dm3] 3L_2310398_SNP [dm6]	C	T	9.622e^-5	0.889	INTERGENIC
X	15006841	X_15006841_INS [dm3] X_15112808_INS [dm6]	T	TT	9.743e^-5	0.889	UTR_3_PRIME Rab3-GEF DOWNSTREAM Cyp4s3
2R	4683640	2R_4683640_SNP [dm3] 2R_8796135_SNP [dm6]	C	T	9.771e^-5	0.889	INTERGENIC
2R	16291670	2R_16291670_SNP [dm3] 2R_20404165_SNP [dm6]	A	C	9.862e^-5	0.889	INTERGENIC
3R	4208364	3R_4208364_SNP [dm3] 3R_8382642_SNP [dm6]	A	G	1.002e^-4	0.889	DOWNSTREAM CG45263 INTRON CG45263
3L	20685189	3L_20685189_SNP [dm3] 3L_20692089_SNP [dm6]	G	A	1.010e^-4	0.889	DOWNSTREAM kni INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16291620	2R_16291620_SNP [dm3] 2R_20404115_SNP [dm6]	A	G	1.015e^-4	0.889	INTERGENIC
3L	15007465	3L_15007465_SNP [dm3] 3L_15014365_SNP [dm6]	G	A	1.023e^-4	0.889	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	4376604	2R_4376604_SNP [dm3] 2R_8489099_SNP [dm6]	T	C	1.026e^-4	0.889	INTRON mtt
2R	17401811	2R_17401811_SNP [dm3] 2R_21514306_SNP [dm6]	A	C	1.049e^-4	0.889	UTR_3_PRIME MESK2 DOWNSTREAM MESK2 INTRON MESK2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	19863107	2R_19863107_SNP [dm3] 2R_23975584_SNP [dm6]	A	G	1.051e^-4	0.889	DOWNSTREAM Gadd34 & 1 other INTERGENIC
3L	3500598	3L_3500598_SNP [dm3] 3L_3500598_SNP [dm6]	A	G	1.051e^-4	0.889	INTRON CG42324
3L	3523122	3L_3523122_SNP [dm3] 3L_3523122_SNP [dm6]	G	T	1.067e^-4	0.889	INTRON Eip63E EXON CR45043
2R	7645313	2R_7645313_SNP [dm3] 2R_11757808_SNP [dm6]	C	T	1.084e^-4	0.889	START_GAINED ths UTR_5_PRIME ths	TF binding site mE1_TFBS_Trl
2L	19077627	2L_19077627_SNP [dm3] 2L_19077627_SNP [dm6]	A	G	1.096e^-4	0.889	NON_SYNONYMOUS_CODING CG10700
3L	12586052	3L_12586052_SNP [dm3] 3L_12592952_SNP [dm6]	C	G	1.099e^-4	0.889	INTRON ara	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10707932	3L_10707932_DEL [dm3] 3L_10714832_DEL [dm6]	TGTTCCGCCC	T	1.101e^-4	0.889	INTERGENIC
3L	5291648	3L_5291648_SNP [dm3] 3L_5298548_SNP [dm6]	A	T	1.103e^-4	0.889	INTERGENIC
2L	20243592	2L_20243592_SNP [dm3] 2L_20243592_SNP [dm6]	G	T	1.107e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	19467400	2R_19467400_SNP [dm3] 2R_23579877_SNP [dm6]	C	G	1.116e^-4	0.889	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14208186	3R_14208186_SNP [dm3] 3R_18382464_SNP [dm6]	C	T	1.129e^-4	0.889	NON_SYNONYMOUS_CODING CG14309	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12085239	3L_12085239_SNP [dm3] 3L_12092139_SNP [dm6]	G	A	1.144e^-4	0.889	INTERGENIC
3R	5010414	3R_5010414_SNP [dm3] 3R_9184692_SNP [dm6]	A	G	1.159e^-4	0.889	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18234215	3L_18234215_SNP [dm3] 3L_18241115_SNP [dm6]	G	C	1.165e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	16251937	2R_16251937_SNP [dm3] 2R_20364432_SNP [dm6]	T	G	1.175e^-4	0.889	INTERGENIC
2L	4982415	2L_4982415_SNP [dm3] 2L_4982415_SNP [dm6]	A	T	1.179e^-4	0.889	UPSTREAM CG8892 INTRON CG34126
2R	6332774	2R_6332774_SNP [dm3] 2R_10445269_SNP [dm6]	G	A	1.186e^-4	0.889	UTR_5_PRIME Galphao INTRON Galphao	TF binding site mE1_TFBS_Trl
2R	6332785	2R_6332785_SNP [dm3] 2R_10445280_SNP [dm6]	T	A	1.186e^-4	0.889	UTR_5_PRIME Galphao INTRON Galphao	TF binding site mE1_TFBS_Trl
2R	6332795	2R_6332795_DEL [dm3] 2R_10445290_DEL [dm6]	AT	A	1.186e^-4	0.889	UTR_5_PRIME Galphao INTRON Galphao	TF binding site mE1_TFBS_Trl
2R	6332841	2R_6332841_SNP [dm3] 2R_10445336_SNP [dm6]	A	G	1.186e^-4	0.889	START_GAINED Galphao UTR_5_PRIME Galphao INTRON Galphao	TF binding site mE1_TFBS_Trl
2L	15058452	2L_15058452_SNP [dm3] 2L_15058452_SNP [dm6]	A	G	1.186e^-4	0.889	SYNONYMOUS_CODING CG33679 UPSTREAM ck DOWNSTREAM TfIIS	TF binding site BDTNP1_TFBS_dl
2L	4323577	2L_4323577_INS [dm3] 2L_4323577_INS [dm6]	A	ATA	1.216e^-4	0.889	UTR_3_PRIME tutl UPSTREAM CG16857 DOWNSTREAM tutl
3L	1579346	3L_1579346_SNP [dm3] 3L_1579346_SNP [dm6]	T	A	1.224e^-4	0.889	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	8411743	X_8411743_SNP [dm3] X_8517710_SNP [dm6]	G	A	1.235e^-4	0.889	UTR_5_PRIME Nrg UPSTREAM Nrg DOWNSTREAM CG33181 INTRON Nrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	3387211	2L_3387211_SNP [dm3] 2L_3387211_SNP [dm6]	G	A	1.256e^-4	0.889	DOWNSTREAM Sfp23F & 1 other EXON CR45301
3L	16237338	3L_16237338_SNP [dm3] 3L_16244238_SNP [dm6]	A	G	1.269e^-4	0.889	INTERGENIC
3L	14339124	3L_14339124_SNP [dm3] 3L_14346024_SNP [dm6]	A	C	1.282e^-4	0.889	INTRON fz
2L	1654265	2L_1654265_SNP [dm3] 2L_1654265_SNP [dm6]	T	C	1.283e^-4	0.889	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12282746	3L_12282746_SNP [dm3] 3L_12289646_SNP [dm6]	A	G	1.287e^-4	0.889	EXON CR45658
2R	7799908	2R_7799908_INS [dm3] 2R_11912403_INS [dm6]	G	GG	1.310e^-4	0.889	INTRON CG13183
3R	27045245	3R_27045245_SNP [dm3] 3R_31219523_SNP [dm6]	A	G	1.327e^-4	0.889	UTR_5_PRIME CG1746 UPSTREAM CG1746 & 1 other INTRON CG1746	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	20946336	X_20946336_SNP [dm3] X_21075309_SNP [dm6]	T	A	1.329e^-4	0.889	INTRON bves
X	20946338	X_20946338_SNP [dm3] X_21075311_SNP [dm6]	T	A	1.329e^-4	0.889	INTRON bves
2L	4698109	2L_4698109_SNP [dm3] 2L_4698109_SNP [dm6]	T	A	1.332e^-4	0.889	INTRON CG34351
3L	11243975	3L_11243975_SNP [dm3] 3L_11250875_SNP [dm6]	G	A	1.332e^-4	0.889	UPSTREAM CR44716 EXON CR44717	TF binding site BDTNP1_TFBS_dl
3L	11244173	3L_11244173_DEL [dm3] 3L_11251073_DEL [dm6]	GTTTCACATTCAG...	G	1.332e^-4	0.889	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	11244236	3L_11244236_SNP [dm3] 3L_11251136_SNP [dm6]	A	G	1.332e^-4	0.889	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	11244264	3L_11244264_SNP [dm3] 3L_11251164_SNP [dm6]	C	A	1.332e^-4	0.889	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	11244287	3L_11244287_INS [dm3] 3L_11251187_INS [dm6]	G	TATTCATTTATCATTATTCA...	1.332e^-4	0.889	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	11244293	3L_11244293_SNP [dm3] 3L_11251193_SNP [dm6]	T	A	1.332e^-4	0.889	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	11244298	3L_11244298_SNP [dm3] 3L_11251198_SNP [dm6]	T	A	1.332e^-4	0.889	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	11244299	3L_11244299_SNP [dm3] 3L_11251199_SNP [dm6]	A	T	1.332e^-4	0.889	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	11244309	3L_11244309_SNP [dm3] 3L_11251209_SNP [dm6]	C	G	1.332e^-4	0.889	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	11244310	3L_11244310_SNP [dm3] 3L_11251210_SNP [dm6]	A	T	1.332e^-4	0.889	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	16081028	3L_16081028_SNP [dm3] 3L_16087928_SNP [dm6]	T	A	1.332e^-4	0.889	UTR_3_PRIME CG5235 UPSTREAM Taspase1	TF binding site BDTNP1_TFBS_dl
3L	16086559	3L_16086559_SNP [dm3] 3L_16093459_SNP [dm6]	G	T	1.332e^-4	0.889	SYNONYMOUS_CODING ClC-c
3L	16121851	3L_16121851_SNP [dm3] 3L_16128751_SNP [dm6]	T	C	1.332e^-4	0.889	UPSTREAM Pgm & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	16147589	3L_16147589_SNP [dm3] 3L_16154489_SNP [dm6]	C	T	1.332e^-4	0.889	INTRON CG5151
3L	16152386	3L_16152386_SNP [dm3] 3L_16159286_SNP [dm6]	A	T	1.332e^-4	0.889	INTRON CG5151
3L	375334	3L_375334_INS [dm3] 3L_375334_INS [dm6]	T	TTT	1.332e^-4	0.889	INTRON trh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	375359	3L_375359_SNP [dm3] 3L_375359_SNP [dm6]	A	G	1.332e^-4	0.889	INTRON trh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17444655	X_17444655_SNP [dm3] X_17550622_SNP [dm6]	T	A	1.332e^-4	0.889	INTRON CG43658
X	17444656	X_17444656_SNP [dm3] X_17550623_SNP [dm6]	G	A	1.332e^-4	0.889	INTRON CG43658
X	17444765	X_17444765_SNP [dm3] X_17550732_SNP [dm6]	T	A	1.332e^-4	0.889	INTRON CG43658
X	6740582	X_6740582_SNP [dm3] X_6846549_SNP [dm6]	C	G	1.332e^-4	0.889	SYNONYMOUS_CODING CG4557	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12231092	3R_12231092_SNP [dm3] 3R_16405370_SNP [dm6]	T	A	1.336e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21411932	3R_21411932_SNP [dm3] 3R_25586210_SNP [dm6]	C	G	1.337e^-4	0.889	INTRON msi
3R	14211012	3R_14211012_SNP [dm3] 3R_18385290_SNP [dm6]	A	G	1.348e^-4	0.889	UPSTREAM cona & 1 other INTERGENIC
3L	1579178	3L_1579178_SNP [dm3] 3L_1579178_SNP [dm6]	G	A	1.349e^-4	0.889	INTRON CG13917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	9559443	3L_9559443_SNP [dm3] 3L_9566343_SNP [dm6]	T	A	1.349e^-4	0.889	INTRON CG42673
2R	12030363	2R_12030363_SNP [dm3] 2R_16142858_SNP [dm6]	T	A	1.359e^-4	0.889	UTR_3_PRIME CG30094 UPSTREAM Aats-cys DOWNSTREAM Got1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	4541964	2R_4541964_SNP [dm3] 2R_8654459_SNP [dm6]	G	C	1.362e^-4	0.889	INTRON ptc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3L	1385737	3L_1385737_SNP [dm3] 3L_1385737_SNP [dm6]	G	A	1.369e^-4	0.889	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	394486	3L_394486_SNP [dm3] 3L_394486_SNP [dm6]	G	T	1.378e^-4	0.889	DOWNSTREAM CR43969 INTERGENIC
2L	1503404	2L_1503404_SNP [dm3] 2L_1503404_SNP [dm6]	T	C	1.381e^-4	0.889	UPSTREAM CG7420 INTRON CR44064	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5416502	3R_5416502_SNP [dm3] 3R_9590780_SNP [dm6]	C	T	1.390e^-4	0.889	SYNONYMOUS_CODING bocksbeutel UPSTREAM CG8312	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	2791806	3L_2791806_SNP [dm3] 3L_2791806_SNP [dm6]	C	T	1.408e^-4	0.889	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1502764	2L_1502764_SNP [dm3] 2L_1502764_SNP [dm6]	G	A	1.418e^-4	0.889	UTR_5_PRIME CG7420 INTRON CR44064	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22925422	3L_22925422_SNP [dm3] 3L_22932322_SNP [dm6]	G	T	1.430e^-4	0.889	INTERGENIC
2L	13753330	2L_13753330_SNP [dm3] 2L_13753330_SNP [dm6]	A	G	1.431e^-4	0.889	INTRON CR44846 & 1 other
3R	23121491	3R_23121491_SNP [dm3] 3R_27295769_SNP [dm6]	G	C	1.438e^-4	0.889	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5646871	2L_5646871_SNP [dm3] 2L_5646871_SNP [dm6]	A	G	1.444e^-4	0.889	INTRON CG31646	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	7145303	2L_7145303_SNP [dm3] 2L_7145303_SNP [dm6]	G	A	1.446e^-4	0.889	DOWNSTREAM CR44612 INTRON Pvf3	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	14208109	3R_14208109_SNP [dm3] 3R_18382387_SNP [dm6]	T	C	1.470e^-4	0.889	SYNONYMOUS_CODING CG14309	TF binding site mE1_TFBS_cad
3R	14819402	3R_14819402_SNP [dm3] 3R_18993680_SNP [dm6]	G	A	1.474e^-4	0.889	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	17688310	3L_17688310_SNP [dm3] 3L_17695210_SNP [dm6]	G	A	1.476e^-4	0.889	INTRON Ccn
3L	17688370	3L_17688370_SNP [dm3] 3L_17695270_SNP [dm6]	T	A	1.476e^-4	0.889	INTRON Ccn
2L	7145637	2L_7145637_SNP [dm3] 2L_7145637_SNP [dm6]	A	G	1.501e^-4	0.889	DOWNSTREAM CR44612 INTRON Pvf3
X	7222672	X_7222672_SNP [dm3] X_7328639_SNP [dm6]	C	A	1.522e^-4	0.889	UTR_3_PRIME Dok UPSTREAM CG18155 INTRON CR44357 & 1 other
3L	12978928	3L_12978928_SNP [dm3] 3L_12985828_SNP [dm6]	A	T	1.528e^-4	0.889	INTERGENIC
3L	15963017	3L_15963017_SNP [dm3] 3L_15969917_SNP [dm6]	T	A	1.529e^-4	0.889	DOWNSTREAM brm & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4426697	3L_4426697_INS [dm3] 3L_4426697_INS [dm6]	T	TGTAT	1.536e^-4	0.889	DOWNSTREAM CG15020 INTERGENIC
3L	9672655	3L_9672655_SNP [dm3] 3L_9679555_SNP [dm6]	G	A	1.536e^-4	0.889	UPSTREAM fry INTRON CG16717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21411999	3R_21411999_SNP [dm3] 3R_25586277_SNP [dm6]	G	A	1.541e^-4	0.889	INTRON msi	TF binding site BDTNP1_TFBS_dl
3R	9582873	3R_9582873_SNP [dm3] 3R_13757151_SNP [dm6]	C	A	1.555e^-4	0.889	INTRON CG34383
X	19874495	X_19874495_SNP [dm3] X_19980462_SNP [dm6]	C	G	1.558e^-4	0.889	INTERGENIC
2R	10274804	2R_10274804_SNP [dm3] 2R_14387299_SNP [dm6]	C	T	1.562e^-4	0.889	INTERGENIC
2L	16042095	2L_16042095_SNP [dm3] 2L_16042095_SNP [dm6]	C	A	1.563e^-4	0.889	UTR_5_PRIME BicC & 1 other UPSTREAM BicC & 1 other DOWNSTREAM beat-Ic
2R	18245307	2R_18245307_SNP [dm3] 2R_22357802_SNP [dm6]	T	C	1.582e^-4	0.889	INTRON Liprin-gamma
2R	17004739	2R_17004739_DEL [dm3] 2R_21117234_DEL [dm6]	TT	C	1.597e^-4	0.889	INTRON ktub
2L	19078815	2L_19078815_SNP [dm3] 2L_19078815_SNP [dm6]	C	T	1.611e^-4	0.889	NON_SYNONYMOUS_CODING CG10700 DOWNSTREAM Lim3	TF binding site mE1_TFBS_sens
2R	13876391	2R_13876391_SNP [dm3] 2R_17988886_SNP [dm6]	G	A	1.629e^-4	0.889	INTRON dpr13
2R	13876607	2R_13876607_SNP [dm3] 2R_17989102_SNP [dm6]	T	A	1.629e^-4	0.889	INTRON dpr13
2R	13876632	2R_13876632_SNP [dm3] 2R_17989127_SNP [dm6]	A	C	1.629e^-4	0.889	INTRON dpr13
2R	13876664	2R_13876664_SNP [dm3] 2R_17989159_SNP [dm6]	A	G	1.629e^-4	0.889	INTRON dpr13
2R	13094903	2R_13094903_SNP [dm3] 2R_17207398_SNP [dm6]	T	A	1.652e^-4	0.889	INTERGENIC
2L	15017162	2L_15017162_SNP [dm3] 2L_15017162_SNP [dm6]	C	A	1.666e^-4	0.889	UTR_5_PRIME GABA-B-R1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9672969	3L_9672969_SNP [dm3] 3L_9679869_SNP [dm6]	T	A	1.674e^-4	0.889	UPSTREAM fry INTRON CG16717	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
3R	19447129	3R_19447129_SNP [dm3] 3R_23621407_SNP [dm6]	A	G	1.683e^-4	0.889	INTRON CG31145
X	15008501	X_15008501_SNP [dm3] X_15114468_SNP [dm6]	C	A	1.683e^-4	0.889	DOWNSTREAM Rab3-GEF INTRON Cyp4s3
3L	12978969	3L_12978969_SNP [dm3] 3L_12985869_SNP [dm6]	C	T	1.690e^-4	0.889	INTERGENIC
3L	3420556	3L_3420556_SNP [dm3] 3L_3420556_SNP [dm6]	G	C	1.705e^-4	0.889	INTRON sty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13238497	2R_13238497_INS [dm3] 2R_17350992_INS [dm6]	T	TTTAT	1.726e^-4	0.889	INTRON mbl
3L	9962511	3L_9962511_DEL [dm3] 3L_9969411_DEL [dm6]	AA	A	1.734e^-4	0.889	INTRON Nc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	4683899	2R_4683899_SNP [dm3] 2R_8796394_SNP [dm6]	T	G	1.757e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1502591	2L_1502591_SNP [dm3] 2L_1502591_SNP [dm6]	A	G	1.763e^-4	0.889	INTRON CR44064 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16700326	3L_16700326_SNP [dm3] 3L_16707226_SNP [dm6]	A	G	1.770e^-4	0.889	DOWNSTREAM CG9692 INTRON Lasp & 1 other
3L	4379842	3L_4379842_SNP [dm3] 3L_4379842_SNP [dm6]	G	A	1.785e^-4	0.889	UPSTREAM DopEcR INTRON DopEcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15958087	3L_15958087_SNP [dm3] 3L_15964987_SNP [dm6]	G	C	1.791e^-4	0.889	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13183622	3L_13183622_SNP [dm3] 3L_13190522_SNP [dm6]	A	T	1.800e^-4	0.889	INTERGENIC
2L	15093388	2L_15093388_SNP [dm3] 2L_15093388_SNP [dm6]	C	T	1.808e^-4	0.889	INTRON CG15270
2L	15093390	2L_15093390_SNP [dm3] 2L_15093390_SNP [dm6]	G	A	1.808e^-4	0.889	INTRON CG15270
2L	20404383	2L_20404383_SNP [dm3] 2L_20404383_SNP [dm6]	T	C	1.808e^-4	0.889	INTRON CG10947
3R	26265804	3R_26265804_SNP [dm3] 3R_30440082_SNP [dm6]	T	C	1.809e^-4	0.889	INTRON CG15537
X	15008482	X_15008482_SNP [dm3] X_15114449_SNP [dm6]	T	G	1.812e^-4	0.889	DOWNSTREAM Rab3-GEF INTRON Cyp4s3
3L	13374266	3L_13374266_SNP [dm3] 3L_13381166_SNP [dm6]	C	G	1.821e^-4	0.889	SYNONYMOUS_CODING CG14107 DOWNSTREAM CG14111	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	21099785	2R_21099785_INS [dm3] 2R_25212262_INS [dm6]	A	AA	1.824e^-4	0.889	INTRON CG9380	regulatory region FlyBase TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	18837505	3L_18837505_SNP [dm3] 3L_18844405_SNP [dm6]	C	T	1.832e^-4	0.889	INTRON Indy
2L	12613466	2L_12613466_SNP [dm3] 2L_12613466_SNP [dm6]	C	T	1.843e^-4	0.889	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Kr mE1_TFBS_Trl
3R	12231117	3R_12231117_SNP [dm3] 3R_16405395_SNP [dm6]	A	C	1.850e^-4	0.889	INTERGENIC
2L	19077535	2L_19077535_SNP [dm3] 2L_19077535_SNP [dm6]	G	C	1.861e^-4	0.889	NON_SYNONYMOUS_CODING CG10700
2L	19077555	2L_19077555_SNP [dm3] 2L_19077555_SNP [dm6]	A	G	1.861e^-4	0.889	SYNONYMOUS_CODING CG10700
2L	19077574	2L_19077574_SNP [dm3] 2L_19077574_SNP [dm6]	G	A	1.861e^-4	0.889	SYNONYMOUS_CODING CG10700
2R	18207201	2R_18207201_SNP [dm3] 2R_22319696_SNP [dm6]	C	T	1.862e^-4	0.889	INTRON Gp150 EXON CR44756	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	18688078	2L_18688078_SNP [dm3] 2L_18688078_SNP [dm6]	C	T	1.864e^-4	0.889	SYNONYMOUS_CODING msl-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7728302	3L_7728302_SNP [dm3] 3L_7735202_SNP [dm6]	T	G	1.865e^-4	0.889	INTRON CG32373 & 1 other
X	15009472	X_15009472_SNP [dm3] X_15115439_SNP [dm6]	T	C	1.866e^-4	0.889	INTRON Cyp4s3
2L	5649697	2L_5649697_SNP [dm3] 2L_5649697_SNP [dm6]	C	A	1.881e^-4	0.889	INTRON CG31646
3L	8519751	3L_8519751_SNP [dm3] 3L_8526651_SNP [dm6]	G	T	1.881e^-4	0.889	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	20249024	3R_20249024_SNP [dm3] 3R_24423302_SNP [dm6]	C	T	1.881e^-4	0.889	INTRON nAChRalpha1
3L	9746786	3L_9746786_SNP [dm3] 3L_9753686_SNP [dm6]	T	C	1.885e^-4	0.889	INTRON CG42268
3L	18817845	3L_18817845_SNP [dm3] 3L_18824745_SNP [dm6]	C	A	1.902e^-4	0.889	INTRON Cat
2L	19075308	2L_19075308_SNP [dm3] 2L_19075308_SNP [dm6]	G	C	1.913e^-4	0.889	EXON CR33315	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9560965	3L_9560965_SNP [dm3] 3L_9567865_SNP [dm6]	C	G	1.919e^-4	0.889	INTRON CG42673
3L	9560970	3L_9560970_SNP [dm3] 3L_9567870_SNP [dm6]	G	A	1.919e^-4	0.889	INTRON CG42673
2R	13495673	2R_13495673_SNP [dm3] 2R_17608168_SNP [dm6]	T	C	1.925e^-4	0.889	SYNONYMOUS_CODING CG10936
2R	17836580	2R_17836580_SNP [dm3] 2R_21949075_SNP [dm6]	T	A	1.925e^-4	0.889	INTERGENIC
3L	9561577	3L_9561577_SNP [dm3] 3L_9568477_SNP [dm6]	G	A	1.925e^-4	0.889	INTRON CG42673
X	5253961	X_5253961_SNP [dm3] X_5359928_SNP [dm6]	C	T	1.925e^-4	0.889	INTRON SK
X	12054899	X_12054899_DEL [dm3] X_12160866_DEL [dm6]	GTGTG	G	1.928e^-4	0.889	INTRON Ten-a
2L	6956419	2L_6956419_SNP [dm3] 2L_6956419_SNP [dm6]	A	G	1.940e^-4	0.889	UPSTREAM CG3430 & 1 other INTRON CG13775	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	6956432	2L_6956432_SNP [dm3] 2L_6956432_SNP [dm6]	A	T	1.940e^-4	0.889	UPSTREAM CG3430 & 1 other INTRON CG13775	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	6482282	2L_6482282_SNP [dm3] 2L_6482282_SNP [dm6]	G	C	1.943e^-4	0.889	NON_SYNONYMOUS_CODING DLP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	14496748	3R_14496748_SNP [dm3] 3R_18671026_SNP [dm6]	T	G	1.975e^-4	0.889	UPSTREAM CG31230 INTRON CG7702	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	5905066	2R_5905066_DEL [dm3] 2R_10017561_DEL [dm6]	CA	G	1.979e^-4	0.889	INTRON Pka-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	20946274	X_20946274_SNP [dm3] X_21075247_SNP [dm6]	T	G	1.981e^-4	0.889	INTRON bves
X	20946334	X_20946334_SNP [dm3] X_21075307_SNP [dm6]	C	A	1.981e^-4	0.889	INTRON bves
3R	26010928	3R_26010928_SNP [dm3] 3R_30185206_SNP [dm6]	T	C	1.982e^-4	0.889	UPSTREAM CR44262 DOWNSTREAM CG9747 INTERGENIC
2R	11034875	2R_11034875_SNP [dm3] 2R_15147370_SNP [dm6]	G	A	1.999e^-4	0.889	NON_SYNONYMOUS_CODING CG8089 UPSTREAM CG7544	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	9567952	3L_9567952_SNP [dm3] 3L_9574852_SNP [dm6]	T	A	2.009e^-4	0.889	INTRON CG42673
2R	21004488	2R_21004488_SNP [dm3] 2R_25116965_SNP [dm6]	C	T	2.040e^-4	0.889	INTRON lov
2L	14452610	2L_14452610_SNP [dm3] 2L_14452610_SNP [dm6]	A	G	2.041e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18911866	2L_18911866_SNP [dm3] 2L_18911866_SNP [dm6]	A	G	2.044e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18507003	2R_18507003_SNP [dm3] 2R_22619498_SNP [dm6]	G	C	2.044e^-4	0.889	INTRON CG33143
2R	18507036	2R_18507036_SNP [dm3] 2R_22619531_SNP [dm6]	A	G	2.044e^-4	0.889	INTRON CG33143
2L	18911758	2L_18911758_SNP [dm3] 2L_18911758_SNP [dm6]	G	A	2.055e^-4	0.889	INTERGENIC
3L	10484177	3L_10484177_SNP [dm3] 3L_10491077_SNP [dm6]	A	G	2.056e^-4	0.889	UTR_5_PRIME S-Lap4 INTRON A2bp1	TF binding site mE1_TFBS_cad
3L	17971998	3L_17971998_SNP [dm3] 3L_17978898_SNP [dm6]	G	A	2.061e^-4	0.889	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2L	1502904	2L_1502904_SNP [dm3] 2L_1502904_SNP [dm6]	G	C	2.094e^-4	0.889	UTR_5_PRIME CG7420 INTRON CR44064	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19461834	2R_19461834_SNP [dm3] 2R_23574311_SNP [dm6]	G	C	2.119e^-4	0.889	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	22169322	X_22169322_SNP [dm3] X_22767486_SNP [dm6]	G	T	2.128e^-4	0.889	UPSTREAM CR44109 INTRON CR44997	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16252026	2R_16252026_SNP [dm3] 2R_20364521_SNP [dm6]	T	C	2.140e^-4	0.889	INTERGENIC
3R	17370221	3R_17370221_SNP [dm3] 3R_21544499_SNP [dm6]	C	A	2.149e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	9428036	2R_9428036_SNP [dm3] 2R_13540531_SNP [dm6]	A	C	2.154e^-4	0.889	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	1755439	2R_1755439_SNP [dm3] 2R_5867934_SNP [dm6]	G	C	2.159e^-4	0.889	INTERGENIC
2L	17898116	2L_17898116_SNP [dm3] 2L_17898116_SNP [dm6]	T	C	2.163e^-4	0.889	INTERGENIC
2R	9515443	2R_9515443_SNP [dm3] 2R_13627938_SNP [dm6]	C	T	2.183e^-4	0.889	INTRON fas
2L	1919656	2L_1919656_SNP [dm3] 2L_1919656_SNP [dm6]	G	A	2.187e^-4	0.889	INTRON CG7337
2R	4464053	2R_4464053_SNP [dm3] 2R_8576548_SNP [dm6]	G	A	2.187e^-4	0.889	NON_SYNONYMOUS_CODING CG42326	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15064985	2L_15064985_SNP [dm3] 2L_15064985_SNP [dm6]	G	A	2.189e^-4	0.889	INTRON vas & 1 other
2R	11595226	2R_11595226_SNP [dm3] 2R_15707721_SNP [dm6]	T	A	2.192e^-4	0.889	INTERGENIC
2R	13669755	2R_13669755_SNP [dm3] 2R_17782250_SNP [dm6]	G	C	2.192e^-4	0.889	UPSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10514583	2R_10514583_SNP [dm3] 2R_14627078_SNP [dm6]	T	C	2.194e^-4	0.889	INTERGENIC
3L	12211200	3L_12211200_SNP [dm3] 3L_12218100_SNP [dm6]	T	G	2.215e^-4	0.889	INTRON app
X	12049483	X_12049483_SNP [dm3] X_12155450_SNP [dm6]	G	A	2.220e^-4	0.889	INTRON Ten-a
3L	12089279	3L_12089279_SNP [dm3] 3L_12096179_SNP [dm6]	T	G	2.223e^-4	0.889	INTERGENIC
3L	1628499	3L_1628499_SNP [dm3] 3L_1628499_SNP [dm6]	A	T	2.224e^-4	0.889	UPSTREAM CG13928 INTRON GC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
X	6548902	X_6548902_SNP [dm3] X_6654869_SNP [dm6]	C	T	2.228e^-4	0.889	UTR_5_PRIME l_1_G0148 UPSTREAM CG3226	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3923135	2R_3923135_SNP [dm3] 2R_8035630_SNP [dm6]	T	G	2.235e^-4	0.889	INTRON Optix	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5719034	2R_5719034_SNP [dm3] 2R_9831529_SNP [dm6]	A	C	2.248e^-4	0.889	UPSTREAM hebe INTRON hebe
X	18343759	X_18343759_SNP [dm3] X_18449726_SNP [dm6]	T	A	2.262e^-4	0.889	INTRON CG32547
2L	22294751	2L_22294751_SNP [dm3] 2L_22294751_SNP [dm6]	T	G	2.271e^-4	0.889	INTERGENIC
2L	13948614	2L_13948614_SNP [dm3] 2L_13948614_SNP [dm6]	T	C	2.271e^-4	0.889	INTRON Ance-3
3R	20249073	3R_20249073_SNP [dm3] 3R_24423351_SNP [dm6]	C	A	2.271e^-4	0.889	INTRON nAChRalpha1
3R	9892152	3R_9892152_DEL [dm3] 3R_14066430_DEL [dm6]	GT	G	2.271e^-4	0.889	INTRON foxo
X	19859856	X_19859856_SNP [dm3] X_19965823_SNP [dm6]	G	A	2.271e^-4	0.889	SYNONYMOUS_CODING Nep3	TF binding site mE1_TFBS_chinmo
X	19859949	X_19859949_SNP [dm3] X_19965916_SNP [dm6]	G	A	2.271e^-4	0.889	SYNONYMOUS_CODING Nep3	TF binding site mE1_TFBS_chinmo
X	8727903	X_8727903_SNP [dm3] X_8833870_SNP [dm6]	G	T	2.271e^-4	0.889	INTERGENIC
2L	15288116	2L_15288116_SNP [dm3] 2L_15288116_SNP [dm6]	A	G	2.274e^-4	0.889	INTERGENIC
2L	1666165	2L_1666165_SNP [dm3] 2L_1666165_SNP [dm6]	G	C	2.274e^-4	0.889	INTRON chinmo
3R	4212896	3R_4212896_SNP [dm3] 3R_8387174_SNP [dm6]	T	C	2.285e^-4	0.889	SYNONYMOUS_CODING CG45263 INTRON CG45263	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10085593	X_10085593_SNP [dm3] X_10191560_SNP [dm6]	A	G	2.293e^-4	0.889	SYNONYMOUS_CODING CG43902 INTRON CR44894
3L	7845930	3L_7845930_SNP [dm3] 3L_7852830_SNP [dm6]	A	G	2.313e^-4	0.889	INTRON Pdp1
3L	14826004	3L_14826004_SNP [dm3] 3L_14832904_SNP [dm6]	G	C	2.318e^-4	0.889	INTRON CG17839
3L	5781095	3L_5781095_SNP [dm3] 3L_5787995_SNP [dm6]	T	A	2.320e^-4	0.889	INTERGENIC
3R	22300740	3R_22300740_SNP [dm3] 3R_26475018_SNP [dm6]	C	T	2.332e^-4	0.889	SYNONYMOUS_CODING plum	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5416643	3R_5416643_SNP [dm3] 3R_9590921_SNP [dm6]	G	C	2.348e^-4	0.889	NON_SYNONYMOUS_CODING bocksbeutel UPSTREAM CG8312	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	11242020	3R_11242020_SNP [dm3] 3R_15416298_SNP [dm6]	T	A	2.353e^-4	0.889	UTR_3_PRIME Atx2 DOWNSTREAM Atx2
2R	19363037	2R_19363037_INS [dm3] 2R_23475514_INS [dm6]	A	AA	2.360e^-4	0.889	DOWNSTREAM CG13557 INTRON CG43795
3R	13161617	3R_13161617_SNP [dm3] 3R_17335895_SNP [dm6]	T	G	2.362e^-4	0.889	INTRON beat-IIa
3R	13163406	3R_13163406_SNP [dm3] 3R_17337684_SNP [dm6]	A	T	2.389e^-4	0.889	INTRON beat-IIa
3R	13163424	3R_13163424_SNP [dm3] 3R_17337702_SNP [dm6]	G	A	2.389e^-4	0.889	INTRON beat-IIa
3L	2725909	3L_2725909_SNP [dm3] 3L_2725909_SNP [dm6]	T	C	2.389e^-4	0.889	INTRON Mrtf
X	15008480	X_15008480_SNP [dm3] X_15114447_SNP [dm6]	A	T	2.396e^-4	0.889	DOWNSTREAM Rab3-GEF INTRON Cyp4s3
X	14420875	X_14420875_SNP [dm3] X_14526842_SNP [dm6]	T	C	2.399e^-4	0.889	INTERGENIC
3L	394610	3L_394610_SNP [dm3] 3L_394610_SNP [dm6]	C	A	2.403e^-4	0.889	DOWNSTREAM CR43969 INTERGENIC
2L	18873395	2L_18873395_SNP [dm3] 2L_18873395_SNP [dm6]	G	A	2.420e^-4	0.889	INTRON tup	TF binding site BDTNP1_TFBS_dl
3L	4058666	3L_4058666_SNP [dm3] 3L_4058666_SNP [dm6]	G	A	2.427e^-4	0.889	SYNONYMOUS_CODING CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	16317280	2R_16317280_SNP [dm3] 2R_20429775_SNP [dm6]	T	C	2.433e^-4	0.889	SPLICE_SITE_REGION CG12484 SYNONYMOUS_CODING CG12484
2R	5176582	2R_5176582_SNP [dm3] 2R_9289077_SNP [dm6]	G	T	2.434e^-4	0.889	UTR_3_PRIME Mad1 DOWNSTREAM CG1968
3R	12954933	3R_12954933_SNP [dm3] 3R_17129211_SNP [dm6]	G	T	2.444e^-4	0.889	DOWNSTREAM CG17475 & 1 other INTERGENIC
2R	17655188	2R_17655188_SNP [dm3] 2R_21767683_SNP [dm6]	T	A	2.446e^-4	0.889	NON_SYNONYMOUS_CODING CG30395 INTRON CG30395
X	15009510	X_15009510_SNP [dm3] X_15115477_SNP [dm6]	A	T	2.464e^-4	0.889	SYNONYMOUS_CODING Cyp4s3
X	11599431	X_11599431_INS [dm3] X_11705398_INS [dm6]	G	GTACACACACACACA...	2.466e^-4	0.889	UPSTREAM CG2444 INTERGENIC
2R	19469170	2R_19469170_SNP [dm3] 2R_23581647_SNP [dm6]	T	G	2.492e^-4	0.889	INTRON apt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8618997	2R_8618997_SNP [dm3] 2R_12731492_SNP [dm6]	G	A	2.511e^-4	0.889	INTRON CG42663	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	19675951	2R_19675951_SNP [dm3] 2R_23788428_SNP [dm6]	G	A	2.517e^-4	0.889	INTRON CG9850
X	17444649	X_17444649_SNP [dm3] X_17550616_SNP [dm6]	A	T	2.524e^-4	0.889	INTRON CG43658
X	18287412	X_18287412_SNP [dm3] X_18393379_SNP [dm6]	C	A	2.524e^-4	0.889	INTRON CG32549
X	18279434	X_18279434_SNP [dm3] X_18385401_SNP [dm6]	C	T	2.525e^-4	0.889	UPSTREAM betaCOP INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	18279506	X_18279506_SNP [dm3] X_18385473_SNP [dm6]	C	T	2.525e^-4	0.889	UPSTREAM betaCOP INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	18279718	X_18279718_SNP [dm3] X_18385685_SNP [dm6]	T	A	2.525e^-4	0.889	UPSTREAM betaCOP INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16913340	X_16913340_SNP [dm3] X_17019307_SNP [dm6]	C	T	2.527e^-4	0.889	UPSTREAM CG45002 INTRON CG45002
X	3315485	X_3315485_SNP [dm3] X_3421452_SNP [dm6]	T	G	2.528e^-4	0.889	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	14427820	X_14427820_SNP [dm3] X_14533787_SNP [dm6]	A	G	2.528e^-4	0.889	INTERGENIC
X	14427823	X_14427823_SNP [dm3] X_14533790_SNP [dm6]	C	T	2.528e^-4	0.889	INTERGENIC
X	14427826	X_14427826_SNP [dm3] X_14533793_SNP [dm6]	C	T	2.528e^-4	0.889	INTERGENIC
3L	11348354	3L_11348354_SNP [dm3] 3L_11355254_SNP [dm6]	C	G	2.576e^-4	0.889	INTERGENIC
3L	11348360	3L_11348360_SNP [dm3] 3L_11355260_SNP [dm6]	A	G	2.576e^-4	0.889	INTERGENIC
X	14427828	X_14427828_SNP [dm3] X_14533795_SNP [dm6]	C	T	2.577e^-4	0.889	INTERGENIC
3R	13980082	3R_13980082_SNP [dm3] 3R_18154360_SNP [dm6]	G	A	2.580e^-4	0.889	DOWNSTREAM CG14316 INTERGENIC
X	14861019	X_14861019_SNP [dm3] X_14966986_SNP [dm6]	G	C	2.608e^-4	0.889	INTRON eag
X	5912585	X_5912585_SNP [dm3] X_6018552_SNP [dm6]	C	T	2.613e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_sens
2L	18547144	2L_18547144_SNP [dm3] 2L_18547144_SNP [dm6]	T	C	2.625e^-4	0.889	INTRON Pde11
3L	15056477	3L_15056477_SNP [dm3] 3L_15063377_SNP [dm6]	T	C	2.638e^-4	0.889	UPSTREAM CR43684 INTRON Sytbeta
X	20946283	X_20946283_SNP [dm3] X_21075256_SNP [dm6]	T	C	2.640e^-4	0.889	INTRON bves
X	20946287	X_20946287_DEL [dm3] X_21075260_DEL [dm6]	TATTTATTAAACGTAAATAT...	T	2.640e^-4	0.889	INTRON bves
X	20946328	X_20946328_SNP [dm3] X_21075301_SNP [dm6]	T	A	2.640e^-4	0.889	INTRON bves
X	20946332	X_20946332_SNP [dm3] X_21075305_SNP [dm6]	T	A	2.640e^-4	0.889	INTRON bves
3R	15001123	3R_15001123_DEL [dm3] 3R_19175401_DEL [dm6]	CGAG	C	2.644e^-4	0.889	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3R	15001141	3R_15001141_DEL [dm3] 3R_19175419_DEL [dm6]	CAAT	C	2.644e^-4	0.889	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3L	7426302	3L_7426302_SNP [dm3] 3L_7433202_SNP [dm6]	G	T	2.662e^-4	0.889	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	10713497	3L_10713497_SNP [dm3] 3L_10720397_SNP [dm6]	G	T	2.668e^-4	0.889	INTERGENIC
3R	13161593	3R_13161593_SNP [dm3] 3R_17335871_SNP [dm6]	T	C	2.669e^-4	0.889	INTRON beat-IIa
3R	6493178	3R_6493178_SNP [dm3] 3R_10667456_SNP [dm6]	A	C	2.672e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15056712	2L_15056712_SNP [dm3] 2L_15056712_SNP [dm6]	T	A	2.692e^-4	0.889	INTRON ck	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
2R	8626992	2R_8626992_SNP [dm3] 2R_12739487_SNP [dm6]	A	G	2.697e^-4	0.889	INTRON CG42663
3L	3484522	3L_3484522_SNP [dm3] 3L_3484522_SNP [dm6]	C	A	2.705e^-4	0.889	INTRON CG42324 & 1 other
2R	19466387	2R_19466387_SNP [dm3] 2R_23578864_SNP [dm6]	G	A	2.705e^-4	0.889	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19074059	2L_19074059_SNP [dm3] 2L_19074059_SNP [dm6]	A	T	2.709e^-4	0.889	UTR_5_PRIME CG17572 DOWNSTREAM CR33315	TF binding site BDTNP1_TFBS_dl
X	16435811	X_16435811_SNP [dm3] X_16541778_SNP [dm6]	T	C	2.712e^-4	0.889	UPSTREAM CG9903 DOWNSTREAM CG9902 INTERGENIC	transposable element FlyBase
3L	9305356	3L_9305356_SNP [dm3] 3L_9312256_SNP [dm6]	C	A	2.725e^-4	0.889	INTERGENIC
2R	6581568	2R_6581568_INS [dm3] 2R_10694063_INS [dm6]	T	TG	2.725e^-4	0.889	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	13844525	2R_13844525_SNP [dm3] 2R_17957020_SNP [dm6]	C	A	2.738e^-4	0.889	UPSTREAM PpY-55A INTERGENIC
3L	1852984	3L_1852984_SNP [dm3] 3L_1852984_SNP [dm6]	A	G	2.738e^-4	0.889	INTRON CG13936	TF binding site mE1_TFBS_cad
3L	1853283	3L_1853283_SNP [dm3] 3L_1853283_SNP [dm6]	A	G	2.738e^-4	0.889	INTRON CG13936
3L	1853289	3L_1853289_SNP [dm3] 3L_1853289_SNP [dm6]	T	G	2.738e^-4	0.889	INTRON CG13936
3L	9560723	3L_9560723_SNP [dm3] 3L_9567623_SNP [dm6]	C	T	2.738e^-4	0.889	INTRON CG42673
X	5254057	X_5254057_SNP [dm3] X_5360024_SNP [dm6]	C	A	2.738e^-4	0.889	INTRON SK
2L	15024899	2L_15024899_SNP [dm3] 2L_15024899_SNP [dm6]	T	A	2.746e^-4	0.889	INTRON GABA-B-R1
2L	15024918	2L_15024918_SNP [dm3] 2L_15024918_SNP [dm6]	C	T	2.746e^-4	0.889	INTRON GABA-B-R1
3R	14523792	3R_14523792_SNP [dm3] 3R_18698070_SNP [dm6]	T	C	2.748e^-4	0.889	INTERGENIC
2R	19468287	2R_19468287_SNP [dm3] 2R_23580764_SNP [dm6]	A	T	2.750e^-4	0.889	UPSTREAM apt INTRON apt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	18279493	X_18279493_INS [dm3] X_18385460_INS [dm6]	A	AT	2.757e^-4	0.889	UPSTREAM betaCOP INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	2612918	2R_2612918_SNP [dm3] 2R_6725413_SNP [dm6]	T	G	2.765e^-4	0.889	INTRON l_2_01289	TF binding site mE1_TFBS_cad
3L	7614136	3L_7614136_DEL [dm3] 3L_7621036_DEL [dm6]	GCAG	G	2.769e^-4	0.889	INTRON CG33275	TF binding site BDTNP1_TFBS_z
3L	11244219	3L_11244219_INS [dm3] 3L_11251119_INS [dm6]	C	CGATATTGTAAAACATACAA...	2.770e^-4	0.889	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	11244223	3L_11244223_SNP [dm3] 3L_11251123_SNP [dm6]	A	T	2.770e^-4	0.889	UPSTREAM CR44716 DOWNSTREAM CR44717 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	8309132	2R_8309132_SNP [dm3] 2R_12421627_SNP [dm6]	G	T	2.784e^-4	0.889	INTRON CG8834	TF binding site mE1_TFBS_cad
2R	20887205	2R_20887205_SNP [dm3] 2R_24999682_SNP [dm6]	A	C	2.790e^-4	0.889	INTRON zip	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6565951	2R_6565951_SNP [dm3] 2R_10678446_SNP [dm6]	C	T	2.799e^-4	0.889	INTRON stan
X	13309776	X_13309776_SNP [dm3] X_13415743_SNP [dm6]	T	A	2.808e^-4	0.889	NON_SYNONYMOUS_CODING Set2
2R	13777372	2R_13777372_SNP [dm3] 2R_17889867_SNP [dm6]	T	G	2.815e^-4	0.889	NON_SYNONYMOUS_CODING PPO1 INTRON Elk
2R	13495871	2R_13495871_SNP [dm3] 2R_17608366_SNP [dm6]	G	C	2.824e^-4	0.889	SYNONYMOUS_CODING CG10936	TF binding site mE1_TFBS_sens
2R	19864298	2R_19864298_SNP [dm3] 2R_23976775_SNP [dm6]	A	G	2.826e^-4	0.889	SYNONYMOUS_CODING Gadd34	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	1298265	2L_1298265_SNP [dm3] 2L_1298265_SNP [dm6]	A	G	2.831e^-4	0.889	INTERGENIC
2L	6889497	2L_6889497_SNP [dm3] 2L_6889497_SNP [dm6]	G	A	2.836e^-4	0.889	INTRON Nlg2
3L	10463486	3L_10463486_SNP [dm3] 3L_10470386_SNP [dm6]	A	G	2.837e^-4	0.889	INTERGENIC
3L	10463495	3L_10463495_SNP [dm3] 3L_10470395_SNP [dm6]	A	C	2.837e^-4	0.889	INTERGENIC
3R	5411756	3R_5411756_SNP [dm3] 3R_9586034_SNP [dm6]	T	G	2.837e^-4	0.889	NON_SYNONYMOUS_CODING CG8301 UPSTREAM P58IPK
3R	5412053	3R_5412053_SNP [dm3] 3R_9586331_SNP [dm6]	T	A	2.837e^-4	0.889	UTR_3_PRIME CG8301 UPSTREAM P58IPK
X	19552918	X_19552918_SNP [dm3] X_19658885_SNP [dm6]	C	A	2.848e^-4	0.889	NON_SYNONYMOUS_CODING CG14215 DOWNSTREAM CG14223	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16488542	2L_16488542_SNP [dm3] 2L_16488542_SNP [dm6]	C	G	2.854e^-4	0.889	NON_SYNONYMOUS_CODING CG4580	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_inv
2R	18374360	2R_18374360_SNP [dm3] 2R_22486855_SNP [dm6]	G	A	2.855e^-4	0.889	SYNONYMOUS_CODING CG4554
3L	9306114	3L_9306114_SNP [dm3] 3L_9313014_SNP [dm6]	A	C	2.865e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	5717895	3R_5717895_SNP [dm3] 3R_9892173_SNP [dm6]	A	G	2.865e^-4	0.889	INTRON Glut4EF
3R	5727209	3R_5727209_SNP [dm3] 3R_9901487_SNP [dm6]	A	G	2.865e^-4	0.889	INTRON Glut4EF
3R	5729720	3R_5729720_SNP [dm3] 3R_9903998_SNP [dm6]	C	T	2.865e^-4	0.889	INTRON Glut4EF
3R	5730320	3R_5730320_SNP [dm3] 3R_9904598_SNP [dm6]	A	G	2.865e^-4	0.889	INTRON Glut4EF
X	17203330	X_17203330_SNP [dm3] X_17309297_SNP [dm6]	G	T	2.865e^-4	0.889	INTERGENIC
X	21936659	X_21936659_SNP [dm3] X_22534823_SNP [dm6]	T	A	2.879e^-4	0.889	UTR_3_PRIME S6kII DOWNSTREAM CG17598 & 1 other INTRON CG17600
3L	9376041	3L_9376041_SNP [dm3] 3L_9382941_SNP [dm6]	G	A	2.935e^-4	0.889	DOWNSTREAM Hsp23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5720226	X_5720226_SNP [dm3] X_5826193_SNP [dm6]	A	G	2.938e^-4	0.889	INTRON CG15765
X	21859155	X_21859155_SNP [dm3] X_22457319_SNP [dm6]	G	T	2.945e^-4	0.889	INTRON CG14619	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	1894401	2R_1894401_DEL [dm3] 2R_6006896_DEL [dm6]	CAGACTAA	T	2.975e^-4	0.889	INTRON Src42A
3L	5291737	3L_5291737_SNP [dm3] 3L_5298637_SNP [dm6]	C	T	2.976e^-4	0.889	INTERGENIC
2L	7435359	2L_7435359_SNP [dm3] 2L_7435359_SNP [dm6]	A	T	2.979e^-4	0.889	INTERGENIC
X	12992458	X_12992458_SNP [dm3] X_13098425_SNP [dm6]	T	C	2.986e^-4	0.889	INTRON CG43313	TF binding site mE1_TFBS_cad
X	3163491	X_3163491_SNP [dm3] X_3269458_SNP [dm6]	T	G	2.995e^-4	0.889	INTRON dnc
2L	14077825	2L_14077825_SNP [dm3] 2L_14077825_SNP [dm6]	C	A	2.998e^-4	0.889	INTRON nAChRalpha5
3L	5675390	3L_5675390_SNP [dm3] 3L_5682290_SNP [dm6]	T	C	2.998e^-4	0.889	INTRON sif
3R	20703937	3R_20703937_SNP [dm3] 3R_24878215_SNP [dm6]	C	A	3.016e^-4	0.889	SYNONYMOUS_CODING CG31381 UPSTREAM CG11089 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18547160	2L_18547160_SNP [dm3] 2L_18547160_SNP [dm6]	A	G	3.023e^-4	0.889	INTRON Pde11
2L	9374381	2L_9374381_SNP [dm3] 2L_9374381_SNP [dm6]	C	T	3.029e^-4	0.889	DOWNSTREAM CR43865 INTRON Shawl
2R	16396512	2R_16396512_INS [dm3] 2R_20509007_INS [dm6]	T	TT	3.031e^-4	0.889	UPSTREAM CR44647 DOWNSTREAM CR44646 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	20233192	X_20233192_SNP [dm3] X_20362165_SNP [dm6]	T	C	3.031e^-4	0.889	INTERGENIC
3L	10483969	3L_10483969_SNP [dm3] 3L_10490869_SNP [dm6]	G	A	3.041e^-4	0.889	UTR_5_PRIME S-Lap4 INTRON A2bp1
2R	1885044	2R_1885044_SNP [dm3] 2R_5997539_SNP [dm6]	G	T	3.055e^-4	0.889	INTRON Src42A
2R	9519037	2R_9519037_SNP [dm3] 2R_13631532_SNP [dm6]	G	T	3.081e^-4	0.889	INTRON fas
2R	13876647	2R_13876647_DEL [dm3] 2R_17989142_DEL [dm6]	AA	A	3.083e^-4	0.889	INTRON dpr13
2L	6988317	2L_6988317_SNP [dm3] 2L_6988317_SNP [dm6]	C	G	3.085e^-4	0.889	INTRON uif
2L	18873392	2L_18873392_SNP [dm3] 2L_18873392_SNP [dm6]	A	T	3.096e^-4	0.889	INTRON tup	TF binding site BDTNP1_TFBS_dl
X	15265371	X_15265371_SNP [dm3] X_15371338_SNP [dm6]	A	T	3.100e^-4	0.889	INTRON acj6
2L	1940048	2L_1940048_SNP [dm3] 2L_1940048_SNP [dm6]	T	C	3.113e^-4	0.889	SYNONYMOUS_CODING CG7337 INTRON CG7337
X	12865753	X_12865753_SNP [dm3] X_12971720_SNP [dm6]	T	C	3.122e^-4	0.889	SYNONYMOUS_CODING CG15721 INTRON CR43636
2L	6091229	2L_6091229_SNP [dm3] 2L_6091229_SNP [dm6]	G	A	3.146e^-4	0.889	UPSTREAM Kr-h1 & 1 other INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	19409302	2L_19409302_DEL [dm3] 2L_19409302_DEL [dm6]	ATA	A	3.149e^-4	0.889	INTRON Pax	TF binding site BDTNP1_TFBS_sna
2L	2800775	2L_2800775_SNP [dm3] 2L_2800775_SNP [dm6]	T	C	3.153e^-4	0.889	UPSTREAM Syt1 INTERGENIC
2L	2800789	2L_2800789_SNP [dm3] 2L_2800789_SNP [dm6]	A	C	3.153e^-4	0.889	UPSTREAM Syt1 INTERGENIC
2L	2800793	2L_2800793_SNP [dm3] 2L_2800793_SNP [dm6]	T	A	3.153e^-4	0.889	UPSTREAM Syt1 INTERGENIC
3R	12038967	3R_12038967_SNP [dm3] 3R_16213245_SNP [dm6]	G	T	3.154e^-4	0.889	UPSTREAM CR45642 INTERGENIC
3R	15016506	3R_15016506_SNP [dm3] 3R_19190784_SNP [dm6]	G	A	3.156e^-4	0.889	INTRON CG31475
3L	18657169	3L_18657169_SNP [dm3] 3L_18664069_SNP [dm6]	T	C	3.182e^-4	0.889	INTRON MYPT-75D
2L	8098357	2L_8098357_SNP [dm3] 2L_8098357_SNP [dm6]	A	C	3.192e^-4	0.889	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	3444316	3R_3444316_SNP [dm3] 3R_7618594_SNP [dm6]	G	T	3.198e^-4	0.889	INTRON CG34127
2L	9057960	2L_9057960_SNP [dm3] 2L_9057960_SNP [dm6]	T	A	3.201e^-4	0.889	INTRON CG31708
3R	13163432	3R_13163432_SNP [dm3] 3R_17337710_SNP [dm6]	T	G	3.207e^-4	0.889	INTRON beat-IIa
3L	20278478	3L_20278478_DEL [dm3] 3L_20285378_DEL [dm6]	GCCACTTGG	G	3.209e^-4	0.889	INTRON gogo
2R	10707707	2R_10707707_SNP [dm3] 2R_14820202_SNP [dm6]	T	C	3.219e^-4	0.889	UPSTREAM CG10202 INTERGENIC	TF binding site mE1_TFBS_Kr
X	21863569	X_21863569_SNP [dm3] X_22461733_SNP [dm6]	G	T	3.226e^-4	0.889	INTRON CG14619	TF binding site mE1_TFBS_HSA
X	18277347	X_18277347_SNP [dm3] X_18383314_SNP [dm6]	G	A	3.228e^-4	0.889	INTRON betaCOP	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10000495	2L_10000495_SNP [dm3] 2L_10000495_SNP [dm6]	T	C	3.230e^-4	0.889	NON_SYNONYMOUS_CODING SoYb INTRON CG31875
3L	7852135	3L_7852135_SNP [dm3] 3L_7859035_SNP [dm6]	G	C	3.236e^-4	0.889	INTRON Pdp1
3L	7852205	3L_7852205_SNP [dm3] 3L_7859105_SNP [dm6]	T	A	3.236e^-4	0.889	INTRON Pdp1
2L	20174236	2L_20174236_SNP [dm3] 2L_20174236_SNP [dm6]	C	G	3.242e^-4	0.889	INTERGENIC	transposable element FlyBase
2R	5912080	2R_5912080_SNP [dm3] 2R_10024575_SNP [dm6]	C	G	3.248e^-4	0.889	INTRON Pka-R2	TF binding site mE1_TFBS_Trl
2R	5915232	2R_5915232_SNP [dm3] 2R_10027727_SNP [dm6]	G	T	3.248e^-4	0.889	SYNONYMOUS_CODING CG12128 UPSTREAM CR44294 DOWNSTREAM CG1407	TF binding site mE1_TFBS_sens
2R	5915599	2R_5915599_SNP [dm3] 2R_10028094_SNP [dm6]	C	T	3.248e^-4	0.889	NON_SYNONYMOUS_CODING CG12128 DOWNSTREAM CG1407	TF binding site mE1_TFBS_sens
3L	8707289	3L_8707289_SNP [dm3] 3L_8714189_SNP [dm6]	G	A	3.259e^-4	0.889	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7823363	2R_7823363_SNP [dm3] 2R_11935858_SNP [dm6]	T	C	3.260e^-4	0.889	INTERGENIC
3R	4213106	3R_4213106_SNP [dm3] 3R_8387384_SNP [dm6]	C	T	3.261e^-4	0.889	SYNONYMOUS_CODING CG45263 INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4348863	3R_4348863_SNP [dm3] 3R_8523141_SNP [dm6]	A	C	3.261e^-4	0.889	NON_SYNONYMOUS_CODING CG31454 UPSTREAM CG31259
3L	17342335	3L_17342335_SNP [dm3] 3L_17349235_SNP [dm6]	G	A	3.261e^-4	0.889	INTRON Mip	TF binding site BDTNP1_TFBS_dl
3L	17342401	3L_17342401_SNP [dm3] 3L_17349301_SNP [dm6]	C	A	3.261e^-4	0.889	INTRON Mip	TF binding site BDTNP1_TFBS_dl
2L	14497353	2L_14497353_SNP [dm3] 2L_14497353_SNP [dm6]	A	G	3.263e^-4	0.889	EXON CR45303	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	5789890	3L_5789890_SNP [dm3] 3L_5796790_SNP [dm6]	T	A	3.271e^-4	0.889	UPSTREAM Tektin-C DOWNSTREAM S6k INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
3L	17155421	3L_17155421_DEL [dm3] 3L_17162321_DEL [dm6]	CTTGTT	C	3.275e^-4	0.889	INTRON Rbp6	TF binding site mE1_TFBS_inv
3R	21095026	3R_21095026_SNP [dm3] 3R_25269304_SNP [dm6]	G	A	3.280e^-4	0.889	UPSTREAM CG11889 & 1 other DOWNSTREAM CR43310 INTRON CR45214 EXON CR13656	TF binding site mE1_TFBS_HSA
2L	19409150	2L_19409150_SNP [dm3] 2L_19409150_SNP [dm6]	T	A	3.295e^-4	0.889	INTRON Pax	TF binding site BDTNP1_TFBS_sna
2L	19409233	2L_19409233_DEL [dm3] 2L_19409233_DEL [dm6]	ATTT	A	3.295e^-4	0.889	INTRON Pax	TF binding site BDTNP1_TFBS_sna
2L	19409276	2L_19409276_SNP [dm3] 2L_19409276_SNP [dm6]	G	A	3.295e^-4	0.889	INTRON Pax	TF binding site BDTNP1_TFBS_sna
2L	19409282	2L_19409282_SNP [dm3] 2L_19409282_SNP [dm6]	C	T	3.295e^-4	0.889	INTRON Pax	TF binding site BDTNP1_TFBS_sna
3L	1853207	3L_1853207_SNP [dm3] 3L_1853207_SNP [dm6]	G	A	3.296e^-4	0.889	INTRON CG13936
2L	18499634	2L_18499634_SNP [dm3] 2L_18499634_SNP [dm6]	C	T	3.306e^-4	0.889	INTRON kon
3R	12717537	3R_12717537_SNP [dm3] 3R_16891815_SNP [dm6]	T	C	3.312e^-4	0.889	UPSTREAM CR43617 INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	20259364	3L_20259364_SNP [dm3] 3L_20266264_SNP [dm6]	G	A	3.315e^-4	0.889	NON_SYNONYMOUS_CODING CG32228 UPSTREAM CR43876 DOWNSTREAM rdgC
2L	20676431	2L_20676431_DEL [dm3] 2L_20676431_DEL [dm6]	CTTTCC	C	3.327e^-4	0.889	UPSTREAM CG31678 INTRON ik2	TF binding site BDTNP1_TFBS_dl
3L	11427526	3L_11427526_SNP [dm3] 3L_11434426_SNP [dm6]	C	A	3.327e^-4	0.889	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	14273918	3R_14273918_INS [dm3] 3R_18448196_INS [dm6]	C	CC	3.327e^-4	0.889	UPSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	14274737	3R_14274737_SNP [dm3] 3R_18449015_SNP [dm6]	T	G	3.327e^-4	0.889	INTRON fru	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	13842683	3R_13842683_DEL [dm3] 3R_18016961_DEL [dm6]	AGTAAAA	A	3.339e^-4	0.889	UTR_3_PRIME cpo
3L	3954665	3L_3954665_SNP [dm3] 3L_3954665_SNP [dm6]	G	A	3.340e^-4	0.889	UTR_3_PRIME CG12605
3L	7846508	3L_7846508_INS [dm3] 3L_7853408_INS [dm6]	T	TT	3.345e^-4	0.889	UTR_5_PRIME Pdp1 INTRON Pdp1
2L	15341435	2L_15341435_SNP [dm3] 2L_15341435_SNP [dm6]	A	G	3.351e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5611769	2L_5611769_SNP [dm3] 2L_5611769_SNP [dm6]	G	T	3.360e^-4	0.889	INTRON CG14010
3R	14832050	3R_14832050_SNP [dm3] 3R_19006328_SNP [dm6]	G	C	3.383e^-4	0.889	INTRON gukh
3R	5416483	3R_5416483_SNP [dm3] 3R_9590761_SNP [dm6]	T	A	3.402e^-4	0.889	NON_SYNONYMOUS_CODING bocksbeutel UPSTREAM CG8312	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	16396495	2R_16396495_SNP [dm3] 2R_20508990_SNP [dm6]	C	T	3.421e^-4	0.889	UPSTREAM CR44647 DOWNSTREAM CR44646 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16435839	X_16435839_SNP [dm3] X_16541806_SNP [dm6]	A	G	3.432e^-4	0.889	UPSTREAM CG9903 DOWNSTREAM CG9902 INTERGENIC	transposable element FlyBase
3R	23121293	3R_23121293_SNP [dm3] 3R_27295571_SNP [dm6]	T	C	3.457e^-4	0.889	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8880152	2L_8880152_SNP [dm3] 2L_8880152_SNP [dm6]	A	G	3.465e^-4	0.889	INTERGENIC
3L	15962955	3L_15962955_SNP [dm3] 3L_15969855_SNP [dm6]	A	C	3.466e^-4	0.889	UTR_3_PRIME CG10516 DOWNSTREAM brm	TF binding site mE1_TFBS_sbb
3R	12939049	3R_12939049_SNP [dm3] 3R_17113327_SNP [dm6]	T	G	3.469e^-4	0.889	INTRON cher	TF binding site mE1_TFBS_cnc
X	6334074	X_6334074_DEL [dm3] X_6440041_DEL [dm6]	AA	T	3.469e^-4	0.889	INTRON CG42340
2R	20778679	2R_20778679_SNP [dm3] 2R_24891156_SNP [dm6]	C	T	3.493e^-4	0.889	UPSTREAM NaCP60E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4428319	3L_4428319_SNP [dm3] 3L_4428319_SNP [dm6]	G	A	3.493e^-4	0.889	INTERGENIC
2R	18000202	2R_18000202_SNP [dm3] 2R_22112697_SNP [dm6]	A	T	3.507e^-4	0.889	SYNONYMOUS_CODING Vrp1 UPSTREAM CG30280 INTRON Vrp1
2R	18000284	2R_18000284_SNP [dm3] 2R_22112779_SNP [dm6]	A	G	3.507e^-4	0.889	UTR_5_PRIME Vrp1 UPSTREAM CG30280 INTRON Vrp1
3R	22890197	3R_22890197_SNP [dm3] 3R_27064475_SNP [dm6]	G	A	3.516e^-4	0.889	UPSTREAM Nep5 & 1 other DOWNSTREAM spz INTERGENIC
2L	16210315	2L_16210315_SNP [dm3] 2L_16210315_SNP [dm6]	G	T	3.522e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	16797700	3L_16797700_DEL [dm3] 3L_16804600_DEL [dm6]	TACTACGTACCAAGCACTT...	T	3.527e^-4	0.889	UPSTREAM nudC INTRON CG9674	TF binding site mE1_TFBS_cad
3L	2874668	3L_2874668_SNP [dm3] 3L_2874668_SNP [dm6]	C	T	3.527e^-4	0.889	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	21666568	2L_21666568_SNP [dm3] 2L_21666568_SNP [dm6]	A	T	3.534e^-4	0.889	INTRON CG2225
2L	21667226	2L_21667226_SNP [dm3] 2L_21667226_SNP [dm6]	G	A	3.534e^-4	0.889	INTRON CG2225
X	10762998	X_10762998_SNP [dm3] X_10868965_SNP [dm6]	T	C	3.540e^-4	0.889	UPSTREAM CG2157 INTERGENIC
X	13346811	X_13346811_SNP [dm3] X_13452778_SNP [dm6]	A	T	3.540e^-4	0.889	INTRON Neto
X	20740911	X_20740911_SNP [dm3] X_20869884_SNP [dm6]	C	T	3.578e^-4	0.889	UPSTREAM CG1314 INTRON shakB
3R	4967503	3R_4967503_SNP [dm3] 3R_9141781_SNP [dm6]	A	T	3.579e^-4	0.889	INTRON pum	TF binding site BDTNP1_TFBS_twi
2R	1366867	2R_1366867_SNP [dm3] 2R_5479362_SNP [dm6]	C	G	3.581e^-4	0.889	INTRON CG30440	transposable element FlyBase
2R	5914402	2R_5914402_SNP [dm3] 2R_10026897_SNP [dm6]	G	A	3.581e^-4	0.889	UTR_5_PRIME CG12128 UPSTREAM Pka-R2 & 1 other INTRON CG12128	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	20375632	3L_20375632_SNP [dm3] 3L_20382532_SNP [dm6]	G	A	3.584e^-4	0.889	NON_SYNONYMOUS_CODING CG5498 DOWNSTREAM RhoBTB
2R	19647732	2R_19647732_SNP [dm3] 2R_23760209_SNP [dm6]	A	T	3.585e^-4	0.889	INTRON CG9850	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	1306810	2L_1306810_SNP [dm3] 2L_1306810_SNP [dm6]	G	A	3.599e^-4	0.889	INTERGENIC
2L	13703988	2L_13703988_DEL [dm3] 2L_13703988_DEL [dm6]	GG	G	3.600e^-4	0.889	INTRON CG31814
3R	7327982	3R_7327982_SNP [dm3] 3R_11502260_SNP [dm6]	A	G	3.604e^-4	0.889	INTRON dpr5
3R	4160431	3R_4160431_SNP [dm3] 3R_8334709_SNP [dm6]	G	A	3.614e^-4	0.889	UPSTREAM Poxm INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18221510	2R_18221510_SNP [dm3] 2R_22334005_SNP [dm6]	T	C	3.616e^-4	0.889	UTR_3_PRIME Liprin-gamma DOWNSTREAM CG34208
2L	1503081	2L_1503081_SNP [dm3] 2L_1503081_SNP [dm6]	A	G	3.638e^-4	0.889	UPSTREAM CG7420 INTRON CR44064	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4376417	2R_4376417_SNP [dm3] 2R_8488912_SNP [dm6]	A	T	3.638e^-4	0.889	INTRON mtt
3R	14510261	3R_14510261_SNP [dm3] 3R_18684539_SNP [dm6]	G	A	3.639e^-4	0.889	SYNONYMOUS_CODING CG7708
2R	5266835	2R_5266835_SNP [dm3] 2R_9379330_SNP [dm6]	T	C	3.642e^-4	0.889	INTRON CG13954
2R	7386146	2R_7386146_SNP [dm3] 2R_11498641_SNP [dm6]	A	G	3.645e^-4	0.889	INTRON inv
3R	13163378	3R_13163378_SNP [dm3] 3R_17337656_SNP [dm6]	T	A	3.646e^-4	0.889	INTRON beat-IIa
3L	7623564	3L_7623564_SNP [dm3] 3L_7630464_SNP [dm6]	T	C	3.655e^-4	0.889	INTRON CG33275
2L	16809558	2L_16809558_SNP [dm3] 2L_16809558_SNP [dm6]	T	C	3.661e^-4	0.889	INTRON CG13280 & 1 other
2L	16809628	2L_16809628_SNP [dm3] 2L_16809628_SNP [dm6]	T	C	3.661e^-4	0.889	INTRON CG13280 & 1 other
2L	16809807	2L_16809807_SNP [dm3] 2L_16809807_SNP [dm6]	G	T	3.661e^-4	0.889	INTRON CG13280 & 1 other
2L	17068409	2L_17068409_DEL [dm3] 2L_17068409_DEL [dm6]	GAGAGTTTAGTG...	A	3.661e^-4	0.889	INTERGENIC
2L	19536865	2L_19536865_SNP [dm3] 2L_19536865_SNP [dm6]	G	C	3.661e^-4	0.889	UTR_3_PRIME CG33116 DOWNSTREAM CG31697
2L	19536891	2L_19536891_SNP [dm3] 2L_19536891_SNP [dm6]	T	C	3.661e^-4	0.889	UTR_3_PRIME CG33116 DOWNSTREAM CG31697
2L	20686301	2L_20686301_SNP [dm3] 2L_20686301_SNP [dm6]	C	T	3.661e^-4	0.889	UTR_3_PRIME Hr38	TF binding site mE1_TFBS_cad
2L	20688729	2L_20688729_SNP [dm3] 2L_20688729_SNP [dm6]	G	C	3.661e^-4	0.889	SYNONYMOUS_CODING Hr38	TF binding site mE1_TFBS_chinmo
2L	20692999	2L_20692999_SNP [dm3] 2L_20692999_SNP [dm6]	T	C	3.661e^-4	0.889	INTRON Hr38	TF binding site mE1_TFBS_chinmo
2L	20693151	2L_20693151_SNP [dm3] 2L_20693151_SNP [dm6]	C	T	3.661e^-4	0.889	INTRON Hr38	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	755585	2L_755585_SNP [dm3] 2L_755585_SNP [dm6]	C	A	3.661e^-4	0.889	INTRON GABA-B-R3
2R	11336819	2R_11336819_SNP [dm3] 2R_15449314_SNP [dm6]	G	A	3.661e^-4	0.889	INTRON CG43729
2R	19308845	2R_19308845_SNP [dm3] 2R_23421322_SNP [dm6]	A	G	3.661e^-4	0.889	DOWNSTREAM CG9815 INTERGENIC
2R	19504645	2R_19504645_SNP [dm3] 2R_23617122_SNP [dm6]	A	T	3.661e^-4	0.889	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
2R	4479585	2R_4479585_SNP [dm3] 2R_8592080_SNP [dm6]	A	G	3.661e^-4	0.889	UPSTREAM CG43183 DOWNSTREAM CG14752 INTERGENIC
2R	5320610	2R_5320610_SNP [dm3] 2R_9433105_SNP [dm6]	T	C	3.661e^-4	0.889	INTRON Pdk	TF binding site mE1_TFBS_cad
2R	5320771	2R_5320771_SNP [dm3] 2R_9433266_SNP [dm6]	A	G	3.661e^-4	0.889	NON_SYNONYMOUS_CODING Pdk INTRON Pdk	TF binding site mE1_TFBS_cad
2R	6104943	2R_6104943_SNP [dm3] 2R_10217438_SNP [dm6]	G	C	3.661e^-4	0.889	INTRON Hr46 & 1 other
2R	9432421	2R_9432421_SNP [dm3] 2R_13544916_SNP [dm6]	C	A	3.661e^-4	0.889	INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
2R	9432428	2R_9432428_SNP [dm3] 2R_13544923_SNP [dm6]	G	A	3.661e^-4	0.889	INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
3L	12263381	3L_12263381_SNP [dm3] 3L_12270281_SNP [dm6]	A	G	3.661e^-4	0.889	UTR_3_PRIME Pbgs DOWNSTREAM CG32100	TF binding site mE1_TFBS_cad
3L	16774309	3L_16774309_SNP [dm3] 3L_16781209_SNP [dm6]	G	A	3.661e^-4	0.889	INTRON CG9705	TF binding site BDTNP1_TFBS_dl
3L	18294601	3L_18294601_SNP [dm3] 3L_18301501_SNP [dm6]	A	T	3.661e^-4	0.889	UPSTREAM CG13700 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2874652	3L_2874652_SNP [dm3] 3L_2874652_SNP [dm6]	T	G	3.661e^-4	0.889	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	7426551	3L_7426551_INS [dm3] 3L_7433451_INS [dm6]	T	TGGTTGTGGCAGTAAGAAAT...	3.661e^-4	0.889	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	7427041	3L_7427041_SNP [dm3] 3L_7433941_SNP [dm6]	G	A	3.661e^-4	0.889	SYNONYMOUS_CODING Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3L	935914	3L_935914_SNP [dm3] 3L_935914_SNP [dm6]	C	T	3.661e^-4	0.889	INTRON Glut1
3R	6644254	3R_6644254_SNP [dm3] 3R_10818532_SNP [dm6]	G	C	3.661e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_sens
4	621501	4_621501_SNP [dm3] 4_600875_SNP [dm6]	C	G	3.661e^-4	0.889	UTR_3_PRIME onecut	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
4	628599	4_628599_SNP [dm3] 4_607973_SNP [dm6]	A	G	3.661e^-4	0.889	UPSTREAM onecut INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12662180	X_12662180_SNP [dm3] X_12768147_SNP [dm6]	A	G	3.661e^-4	0.889	INTRON CG3812
X	20416648	X_20416648_SNP [dm3] X_20545621_SNP [dm6]	T	G	3.661e^-4	0.889	INTRON RunxB	TF binding site mE1_TFBS_sbb
X	20416657	X_20416657_DEL [dm3] X_20545630_DEL [dm6]	TAACTTGAACGTAACCAT...	T	3.661e^-4	0.889	INTRON RunxB	TF binding site mE1_TFBS_sbb
X	3759703	X_3759703_SNP [dm3] X_3865670_SNP [dm6]	G	A	3.661e^-4	0.889	INTRON yin
2R	18780587	2R_18780587_SNP [dm3] 2R_22893064_SNP [dm6]	C	T	3.668e^-4	0.889	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	6252888	2R_6252888_SNP [dm3] 2R_10365383_SNP [dm6]	G	T	3.685e^-4	0.889	UPSTREAM CG42732 INTRON CG42732
2R	8279515	2R_8279515_SNP [dm3] 2R_12392010_SNP [dm6]	T	A	3.685e^-4	0.889	UPSTREAM Cpr49Ad INTERGENIC
2R	8279519	2R_8279519_SNP [dm3] 2R_12392014_SNP [dm6]	A	G	3.685e^-4	0.889	UPSTREAM Cpr49Ad INTERGENIC
3L	9442870	3L_9442870_SNP [dm3] 3L_9449770_SNP [dm6]	A	G	3.685e^-4	0.889	SYNONYMOUS_CODING CG3529 DOWNSTREAM CG3448	TF binding site mE1_TFBS_cad
3R	5217425	3R_5217425_SNP [dm3] 3R_9391703_SNP [dm6]	C	G	3.685e^-4	0.889	INTRON FER	TF binding site BDTNP1_TFBS_da
3R	5726713	3R_5726713_SNP [dm3] 3R_9900991_SNP [dm6]	C	T	3.688e^-4	0.889	INTRON Glut4EF
X	3046209	X_3046209_SNP [dm3] X_3152176_SNP [dm6]	T	C	3.703e^-4	0.889	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15299655	2L_15299655_SNP [dm3] 2L_15299655_SNP [dm6]	C	A	3.706e^-4	0.889	DOWNSTREAM CG15262 INTERGENIC
3R	4355204	3R_4355204_SNP [dm3] 3R_8529482_SNP [dm6]	T	C	3.706e^-4	0.889	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	4377379	3R_4377379_SNP [dm3] 3R_8551657_SNP [dm6]	C	T	3.706e^-4	0.889	UPSTREAM Or85d INTERGENIC
3R	4377452	3R_4377452_SNP [dm3] 3R_8551730_SNP [dm6]	G	A	3.706e^-4	0.889	UPSTREAM Or85d INTERGENIC
3R	4377502	3R_4377502_SNP [dm3] 3R_8551780_SNP [dm6]	T	A	3.706e^-4	0.889	UPSTREAM Or85d INTERGENIC
X	12992452	X_12992452_SNP [dm3] X_13098419_SNP [dm6]	T	A	3.716e^-4	0.889	INTRON CG43313	TF binding site mE1_TFBS_cad
2L	13948266	2L_13948266_SNP [dm3] 2L_13948266_SNP [dm6]	A	G	3.721e^-4	0.889	UPSTREAM CG16884 INTRON Ance-3
2L	4486493	2L_4486493_SNP [dm3] 2L_4486493_SNP [dm6]	T	G	3.726e^-4	0.889	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13954529	3L_13954529_SNP [dm3] 3L_13961429_SNP [dm6]	C	G	3.732e^-4	0.889	SYNONYMOUS_CODING CG32137	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	13689870	2R_13689870_SNP [dm3] 2R_17802365_SNP [dm6]	G	A	3.737e^-4	0.889	UTR_5_PRIME grh UPSTREAM CR45270 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	9670649	3L_9670649_SNP [dm3] 3L_9677549_SNP [dm6]	A	T	3.741e^-4	0.889	INTRON fry	TF binding site BDTNP1_TFBS_dl
3L	9672578	3L_9672578_SNP [dm3] 3L_9679478_SNP [dm6]	G	A	3.741e^-4	0.889	UPSTREAM fry INTRON CG16717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9673047	3L_9673047_SNP [dm3] 3L_9679947_SNP [dm6]	G	T	3.741e^-4	0.889	NON_SYNONYMOUS_CODING CG16717 UPSTREAM fry	TF binding site mE1_TFBS_cad
3L	9674677	3L_9674677_SNP [dm3] 3L_9681577_SNP [dm6]	A	G	3.741e^-4	0.889	DOWNSTREAM CG16717 INTRON alphaTub67C
3L	9674872	3L_9674872_SNP [dm3] 3L_9681772_SNP [dm6]	T	G	3.741e^-4	0.889	DOWNSTREAM CG16717 INTRON alphaTub67C	TF binding site mE1_TFBS_cad
3L	9674908	3L_9674908_DEL [dm3] 3L_9681808_DEL [dm6]	TTGTAA	T	3.741e^-4	0.889	DOWNSTREAM CG16717 INTRON alphaTub67C	TF binding site mE1_TFBS_cad
3L	9559499	3L_9559499_SNP [dm3] 3L_9566399_SNP [dm6]	G	T	3.746e^-4	0.889	INTRON CG42673
2R	11560936	2R_11560936_SNP [dm3] 2R_15673431_SNP [dm6]	A	G	3.746e^-4	0.889	INTRON fus
2L	6940306	2L_6940306_DEL [dm3] 2L_6940306_DEL [dm6]	ACA	T	3.754e^-4	0.889	INTRON CG18304	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
2L	15341555	2L_15341555_SNP [dm3] 2L_15341555_SNP [dm6]	T	C	3.761e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18506868	2R_18506868_SNP [dm3] 2R_22619363_SNP [dm6]	G	T	3.765e^-4	0.889	INTRON CG33143
3L	20571043	3L_20571043_SNP [dm3] 3L_20577943_SNP [dm6]	C	A	3.808e^-4	0.889	INTERGENIC
2L	16056120	2L_16056120_SNP [dm3] 2L_16056120_SNP [dm6]	C	A	3.812e^-4	0.889	INTRON beat-Ia
3L	16079730	3L_16079730_SNP [dm3] 3L_16086630_SNP [dm6]	G	T	3.812e^-4	0.889	SYNONYMOUS_CODING Taspase1 DOWNSTREAM CG5235	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5760255	3R_5760255_SNP [dm3] 3R_9934533_SNP [dm6]	T	C	3.819e^-4	0.889	INTRON Glut4EF
X	5912605	X_5912605_SNP [dm3] X_6018572_SNP [dm6]	T	A	3.834e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_sens
X	13309856	X_13309856_SNP [dm3] X_13415823_SNP [dm6]	A	G	3.841e^-4	0.889	NON_SYNONYMOUS_CODING Set2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19774668	3R_19774668_SNP [dm3] 3R_23948946_SNP [dm6]	G	A	3.847e^-4	0.889	UPSTREAM CG12268 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	9927476	2R_9927476_INS [dm3] 2R_14039971_INS [dm6]	A	AGCA	3.855e^-4	0.889	SPLICE_SITE_REGION mam INTRON mam	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13876499	2R_13876499_SNP [dm3] 2R_17988994_SNP [dm6]	A	G	3.867e^-4	0.889	INTRON dpr13
2R	13240558	2R_13240558_SNP [dm3] 2R_17353053_SNP [dm6]	G	C	3.873e^-4	0.889	UTR_3_PRIME mbl INTRON mbl
3R	15744569	3R_15744569_SNP [dm3] 3R_19918847_SNP [dm6]	C	T	3.877e^-4	0.889	SYNONYMOUS_CODING CG4770
3R	21360943	3R_21360943_SNP [dm3] 3R_25535221_SNP [dm6]	A	G	3.877e^-4	0.889	INTRON msi
2R	10007977	2R_10007977_SNP [dm3] 2R_14120472_SNP [dm6]	C	G	3.887e^-4	0.889	INTRON Prosap	TF binding site BDTNP1_TFBS_prd
2R	13135058	2R_13135058_SNP [dm3] 2R_17247553_SNP [dm6]	A	G	3.892e^-4	0.889	UPSTREAM CG12699 INTRON mbl
3R	23915432	3R_23915432_SNP [dm3] 3R_28089710_SNP [dm6]	A	T	3.906e^-4	0.889	UTR_3_PRIME CG34362
3L	17815277	3L_17815277_SNP [dm3] 3L_17822177_SNP [dm6]	T	G	3.918e^-4	0.889	NON_SYNONYMOUS_CODING Ir75c
3R	21412138	3R_21412138_SNP [dm3] 3R_25586416_SNP [dm6]	A	G	3.933e^-4	0.889	INTRON msi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9672674	3L_9672674_SNP [dm3] 3L_9679574_SNP [dm6]	T	C	3.943e^-4	0.889	UPSTREAM fry INTRON CG16717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9672680	3L_9672680_SNP [dm3] 3L_9679580_SNP [dm6]	C	T	3.943e^-4	0.889	UPSTREAM fry INTRON CG16717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9672682	3L_9672682_SNP [dm3] 3L_9679582_SNP [dm6]	T	C	3.943e^-4	0.889	UPSTREAM fry INTRON CG16717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10759508	3L_10759508_SNP [dm3] 3L_10766408_SNP [dm6]	T	C	3.946e^-4	0.889	INTERGENIC
X	18112861	X_18112861_SNP [dm3] X_18218828_SNP [dm6]	A	C	3.948e^-4	0.889	INTRON CG33639	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6525641	X_6525641_SNP [dm3] X_6631608_SNP [dm6]	A	C	3.993e^-4	0.889	INTRON pigs	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	20404210	2R_20404210_SNP [dm3] 2R_24516687_SNP [dm6]	T	C	4.002e^-4	0.889	SYNONYMOUS_CODING Ir60b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	9654791	2R_9654791_SNP [dm3] 2R_13767286_SNP [dm6]	A	G	4.007e^-4	0.889	INTERGENIC
3L	11426116	3L_11426116_SNP [dm3] 3L_11433016_SNP [dm6]	G	T	4.023e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	821569	2L_821569_SNP [dm3] 2L_821569_SNP [dm6]	A	G	4.040e^-4	0.889	SYNONYMOUS_CODING CG3662 UTR_5_PRIME CG3662 DOWNSTREAM Clp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	17750934	2R_17750934_SNP [dm3] 2R_21863429_SNP [dm6]	C	T	4.068e^-4	0.889	INTERGENIC
2R	9562078	2R_9562078_SNP [dm3] 2R_13674573_SNP [dm6]	G	T	4.072e^-4	0.889	INTRON fas EXON CR45032	TF binding site mE1_TFBS_chinmo
2R	1872410	2R_1872410_SNP [dm3] 2R_5984905_SNP [dm6]	G	A	4.087e^-4	0.889	INTRON Src42A
3R	14211467	3R_14211467_SNP [dm3] 3R_18385745_SNP [dm6]	T	A	4.096e^-4	0.889	UPSTREAM cona & 1 other INTERGENIC
3R	14211488	3R_14211488_SNP [dm3] 3R_18385766_SNP [dm6]	G	A	4.096e^-4	0.889	UPSTREAM cona & 1 other INTERGENIC
3L	17688705	3L_17688705_SNP [dm3] 3L_17695605_SNP [dm6]	T	C	4.097e^-4	0.889	INTRON Ccn
2R	9572176	2R_9572176_SNP [dm3] 2R_13684671_SNP [dm6]	T	G	4.127e^-4	0.889	INTRON fas
3R	12231506	3R_12231506_SNP [dm3] 3R_16405784_SNP [dm6]	G	A	4.136e^-4	0.889	UPSTREAM CR45630 INTERGENIC
3R	4880640	3R_4880640_SNP [dm3] 3R_9054918_SNP [dm6]	G	C	4.137e^-4	0.889	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	14036758	3R_14036758_SNP [dm3] 3R_18211036_SNP [dm6]	A	G	4.146e^-4	0.889	INTRON CG7985
X	18279701	X_18279701_SNP [dm3] X_18385668_SNP [dm6]	T	G	4.159e^-4	0.889	UPSTREAM betaCOP INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12263585	2R_12263585_SNP [dm3] 2R_16376080_SNP [dm6]	C	A	4.166e^-4	0.889	INTERGENIC
3L	11178935	3L_11178935_INS [dm3] 3L_11185835_INS [dm6]	G	GATTATCTTAGCG...	4.173e^-4	0.889	INTRON GlcAT-P
3L	1852661	3L_1852661_INS [dm3] 3L_1852661_INS [dm6]	T	TT	4.194e^-4	0.889	INTRON CG13936	TF binding site mE1_TFBS_cad
3R	11326189	3R_11326189_SNP [dm3] 3R_15500467_SNP [dm6]	A	G	4.214e^-4	0.889	INTERGENIC
X	14861261	X_14861261_SNP [dm3] X_14967228_SNP [dm6]	C	A	4.220e^-4	0.889	INTRON eag
X	14861387	X_14861387_SNP [dm3] X_14967354_SNP [dm6]	T	A	4.220e^-4	0.889	INTRON eag
2R	5904896	2R_5904896_SNP [dm3] 2R_10017391_SNP [dm6]	C	G	4.222e^-4	0.889	INTRON Pka-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	4287384	3R_4287384_SNP [dm3] 3R_8461662_SNP [dm6]	C	T	4.223e^-4	0.889	INTRON CG45263
2R	12150642	2R_12150642_SNP [dm3] 2R_16263137_SNP [dm6]	C	T	4.225e^-4	0.889	INTRON fidipidine
3R	20990665	3R_20990665_SNP [dm3] 3R_25164943_SNP [dm6]	T	G	4.229e^-4	0.889	INTERGENIC
2L	6765506	2L_6765506_SNP [dm3] 2L_6765506_SNP [dm6]	T	G	4.237e^-4	0.889	SYNONYMOUS_CODING CG11321
2L	2800827	2L_2800827_SNP [dm3] 2L_2800827_SNP [dm6]	T	C	4.239e^-4	0.889	UPSTREAM Syt1 INTERGENIC
2L	10000738	2L_10000738_SNP [dm3] 2L_10000738_SNP [dm6]	G	T	4.241e^-4	0.889	NON_SYNONYMOUS_CODING SoYb INTRON CG31875
2R	9520235	2R_9520235_SNP [dm3] 2R_13632730_SNP [dm6]	G	C	4.247e^-4	0.889	INTRON fas
X	3315525	X_3315525_SNP [dm3] X_3421492_SNP [dm6]	C	T	4.255e^-4	0.889	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20424403	3R_20424403_INS [dm3] 3R_24598681_INS [dm6]	T	TCTT	4.262e^-4	0.889	INTRON mld
2L	755744	2L_755744_SNP [dm3] 2L_755744_SNP [dm6]	G	T	4.264e^-4	0.889	UTR_3_PRIME GABA-B-R3 INTRON GABA-B-R3
3L	14374994	3L_14374994_SNP [dm3] 3L_14381894_SNP [dm6]	T	C	4.301e^-4	0.889	UPSTREAM CG43120 INTERGENIC
2L	20169578	2L_20169578_SNP [dm3] 2L_20169578_SNP [dm6]	T	A	4.310e^-4	0.889	INTERGENIC	transposable element FlyBase
X	18442578	X_18442578_SNP [dm3] X_18548545_SNP [dm6]	A	G	4.310e^-4	0.889	INTRON Bx	TF binding site mE1_TFBS_HSA
3L	18153587	3L_18153587_SNP [dm3] 3L_18160487_SNP [dm6]	G	A	4.318e^-4	0.889	INTRON CG13699
2R	18505537	2R_18505537_SNP [dm3] 2R_22618032_SNP [dm6]	G	A	4.327e^-4	0.889	INTRON CG33143	TF binding site mE1_TFBS_cad
3L	5868288	3L_5868288_SNP [dm3] 3L_5875188_SNP [dm6]	T	G	4.328e^-4	0.889	NON_SYNONYMOUS_CODING CG18586
2L	15014526	2L_15014526_SNP [dm3] 2L_15014526_SNP [dm6]	A	G	4.341e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13231561	3L_13231561_DEL [dm3] 3L_13238461_DEL [dm6]	AA	A	4.350e^-4	0.889	INTRON caps
3L	9674611	3L_9674611_SNP [dm3] 3L_9681511_SNP [dm6]	A	G	4.358e^-4	0.889	DOWNSTREAM CG16717 INTRON alphaTub67C
X	6178040	X_6178040_SNP [dm3] X_6284007_SNP [dm6]	G	T	4.361e^-4	0.889	UPSTREAM CG11700 DOWNSTREAM Top3beta INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8679939	X_8679939_SNP [dm3] X_8785906_SNP [dm6]	C	A	4.361e^-4	0.889	UPSTREAM Lim1 INTRON Lim1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	19073945	2L_19073945_SNP [dm3] 2L_19073945_SNP [dm6]	A	T	4.363e^-4	0.889	INTRON CG17572	TF binding site BDTNP1_TFBS_dl
2R	19127242	2R_19127242_SNP [dm3] 2R_23239719_SNP [dm6]	C	T	4.390e^-4	0.889	INTERGENIC
3L	9101724	3L_9101724_SNP [dm3] 3L_9108624_SNP [dm6]	T	A	4.397e^-4	0.889	INTRON bol
X	21928392	X_21928392_SNP [dm3] X_22526556_SNP [dm6]	T	G	4.398e^-4	0.889	INTRON CG17600
2L	9057630	2L_9057630_SNP [dm3] 2L_9057630_SNP [dm6]	T	A	4.410e^-4	0.889	INTRON CG31708
2L	14429625	2L_14429625_SNP [dm3] 2L_14429625_SNP [dm6]	T	G	4.411e^-4	0.889	EXON CR44732	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	14429643	2L_14429643_SNP [dm3] 2L_14429643_SNP [dm6]	A	C	4.411e^-4	0.889	EXON CR44732	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	15734934	2R_15734934_SNP [dm3] 2R_19847429_SNP [dm6]	T	G	4.423e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	13038524	3R_13038524_SNP [dm3] 3R_17212802_SNP [dm6]	G	A	4.426e^-4	0.889	INTERGENIC
2L	1654670	2L_1654670_SNP [dm3] 2L_1654670_SNP [dm6]	C	T	4.434e^-4	0.889	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
3R	26005348	3R_26005348_SNP [dm3] 3R_30179626_SNP [dm6]	A	T	4.435e^-4	0.889	NON_SYNONYMOUS_CODING CG15530 UPSTREAM Bet5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2L	3495230	2L_3495230_SNP [dm3] 2L_3495230_SNP [dm6]	C	A	4.437e^-4	0.889	INTRON tim
3R	5388827	3R_5388827_INS [dm3] 3R_9563105_INS [dm6]	T	TGAT	4.437e^-4	0.889	UPSTREAM Vps45 INTRON CG9393	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	2352837	3L_2352837_SNP [dm3] 3L_2352837_SNP [dm6]	G	T	4.442e^-4	0.889	INTERGENIC
3L	8081687	3L_8081687_SNP [dm3] 3L_8088587_SNP [dm6]	C	G	4.445e^-4	0.889	SYNONYMOUS_CODING CG7565 INTRON Ect4	TF binding site mE1_TFBS_cad
2L	18859796	2L_18859796_SNP [dm3] 2L_18859796_SNP [dm6]	G	A	4.467e^-4	0.889	UTR_3_PRIME tup UPSTREAM mRpL13 & 1 other DOWNSTREAM tup	TF binding site mE1_TFBS_bab1
3R	22893479	3R_22893479_SNP [dm3] 3R_27067757_SNP [dm6]	T	C	4.519e^-4	0.889	INTRON spz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22893503	3R_22893503_SNP [dm3] 3R_27067781_SNP [dm6]	C	A	4.519e^-4	0.889	INTRON spz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3802418	2L_3802418_SNP [dm3] 2L_3802418_SNP [dm6]	A	G	4.526e^-4	0.889	UTR_3_PRIME CG3921
2R	19468685	2R_19468685_SNP [dm3] 2R_23581162_SNP [dm6]	A	T	4.526e^-4	0.889	UTR_5_PRIME apt INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19468924	2R_19468924_SNP [dm3] 2R_23581401_SNP [dm6]	C	T	4.526e^-4	0.889	UTR_5_PRIME apt INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14758965	3L_14758965_SNP [dm3] 3L_14765865_SNP [dm6]	T	G	4.527e^-4	0.889	UTR_3_PRIME CG9384	TF binding site mE1_TFBS_cad
X	21904991	X_21904991_SNP [dm3] X_22503155_SNP [dm6]	T	A	4.529e^-4	0.889	INTRON l_1_G0196
X	21904997	X_21904997_SNP [dm3] X_22503161_SNP [dm6]	C	T	4.529e^-4	0.889	INTRON l_1_G0196
X	13309854	X_13309854_SNP [dm3] X_13415821_SNP [dm6]	G	A	4.534e^-4	0.889	SYNONYMOUS_CODING Set2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11426104	3L_11426104_SNP [dm3] 3L_11433004_SNP [dm6]	T	C	4.536e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16950422	2L_16950422_SNP [dm3] 2L_16950422_SNP [dm6]	A	C	4.542e^-4	0.889	UPSTREAM CR44393 INTERGENIC
3L	10707666	3L_10707666_SNP [dm3] 3L_10714566_SNP [dm6]	C	A	4.550e^-4	0.889	INTERGENIC
2R	1840713	2R_1840713_SNP [dm3] 2R_5953208_SNP [dm6]	A	G	4.561e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	699691	3L_699691_SNP [dm3] 3L_699691_SNP [dm6]	A	G	4.574e^-4	0.889	UPSTREAM CG13894 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
2L	3381695	2L_3381695_SNP [dm3] 2L_3381695_SNP [dm6]	G	A	4.597e^-4	0.889	INTERGENIC
3R	5741988	3R_5741988_SNP [dm3] 3R_9916266_SNP [dm6]	C	T	4.602e^-4	0.889	INTRON Glut4EF
3L	394255	3L_394255_SNP [dm3] 3L_394255_SNP [dm6]	T	C	4.612e^-4	0.889	UPSTREAM CR45378 EXON CR43969
3L	394257	3L_394257_SNP [dm3] 3L_394257_SNP [dm6]	T	A	4.612e^-4	0.889	EXON CR43969
2L	755467	2L_755467_SNP [dm3] 2L_755467_SNP [dm6]	G	A	4.632e^-4	0.889	INTRON GABA-B-R3
3L	3753365	3L_3753365_SNP [dm3] 3L_3753365_SNP [dm6]	T	A	4.632e^-4	0.889	DOWNSTREAM ppk27 INTRON CG32264
2L	15093739	2L_15093739_SNP [dm3] 2L_15093739_SNP [dm6]	A	T	4.641e^-4	0.889	INTRON CG15270
2L	22001310	2L_22001310_SNP [dm3] 2L_22001310_SNP [dm6]	G	A	4.648e^-4	0.889	UPSTREAM CR44916 INTERGENIC
X	13708989	X_13708989_INS [dm3] X_13814956_INS [dm6]	T	TC	4.651e^-4	0.889	INTRON Clic	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_jumu
2L	22297692	2L_22297692_SNP [dm3] 2L_22297692_SNP [dm6]	C	T	4.657e^-4	0.889	INTERGENIC	transposable element FlyBase
2R	18546755	2R_18546755_SNP [dm3] 2R_22659250_SNP [dm6]	A	G	4.660e^-4	0.889	START_GAINED CG13511 & 1 other UTR_5_PRIME CG13511 & 1 other UTR_3_PRIME CG13510 UPSTREAM CG13511 DOWNSTREAM CG13510
2R	18816000	2R_18816000_SNP [dm3] 2R_22928477_SNP [dm6]	A	G	4.660e^-4	0.889	UPSTREAM CG42678 DOWNSTREAM CG42678 INTRON CG42678
3L	7426328	3L_7426328_SNP [dm3] 3L_7433228_SNP [dm6]	T	C	4.660e^-4	0.889	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	7426352	3L_7426352_SNP [dm3] 3L_7433252_SNP [dm6]	T	C	4.660e^-4	0.889	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	7426369	3L_7426369_SNP [dm3] 3L_7433269_SNP [dm6]	A	T	4.660e^-4	0.889	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	7426371	3L_7426371_SNP [dm3] 3L_7433271_SNP [dm6]	A	T	4.660e^-4	0.889	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	7426378	3L_7426378_SNP [dm3] 3L_7433278_SNP [dm6]	G	C	4.660e^-4	0.889	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	7426381	3L_7426381_SNP [dm3] 3L_7433281_SNP [dm6]	T	C	4.660e^-4	0.889	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	7426384	3L_7426384_DEL [dm3] 3L_7433284_DEL [dm6]	TT	T	4.660e^-4	0.889	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	7426422	3L_7426422_DEL [dm3] 3L_7433322_DEL [dm6]	TATGT	T	4.660e^-4	0.889	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	7426432	3L_7426432_SNP [dm3] 3L_7433332_SNP [dm6]	G	A	4.660e^-4	0.889	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	7426572	3L_7426572_SNP [dm3] 3L_7433472_SNP [dm6]	C	T	4.660e^-4	0.889	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	7426573	3L_7426573_SNP [dm3] 3L_7433473_SNP [dm6]	A	C	4.660e^-4	0.889	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	7426607	3L_7426607_SNP [dm3] 3L_7433507_SNP [dm6]	A	T	4.660e^-4	0.889	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	7426614	3L_7426614_SNP [dm3] 3L_7433514_SNP [dm6]	T	C	4.660e^-4	0.889	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	13495664	2R_13495664_SNP [dm3] 2R_17608159_SNP [dm6]	G	C	4.664e^-4	0.889	SYNONYMOUS_CODING CG10936
2L	13694324	2L_13694324_SNP [dm3] 2L_13694324_SNP [dm6]	G	A	4.667e^-4	0.889	INTRON CG31814
2L	19562760	2L_19562760_SNP [dm3] 2L_19562760_SNP [dm6]	G	A	4.667e^-4	0.889	SYNONYMOUS_CODING Tep5	TF binding site mE1_TFBS_cnc
2L	20687133	2L_20687133_DEL [dm3] 2L_20687133_DEL [dm6]	ATTGTAGTTATAAAGTTAGG...	A	4.667e^-4	0.889	INTRON Hr38	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20687162	2L_20687162_DEL [dm3] 2L_20687162_DEL [dm6]	AG	T	4.667e^-4	0.889	INTRON Hr38	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	21938920	2L_21938920_SNP [dm3] 2L_21938920_SNP [dm6]	G	A	4.667e^-4	0.889	INTERGENIC
2L	21958239	2L_21958239_SNP [dm3] 2L_21958239_SNP [dm6]	T	A	4.667e^-4	0.889	UPSTREAM CR44803 EXON CR44217
2L	4473527	2L_4473527_SNP [dm3] 2L_4473527_SNP [dm6]	C	A	4.667e^-4	0.889	UPSTREAM ine INTRON ine
2R	19306661	2R_19306661_DEL [dm3] 2R_23419138_DEL [dm6]	AGTTCGCTATTGGT...	A	4.667e^-4	0.889	INTRON CG9812
2R	19306676	2R_19306676_SNP [dm3] 2R_23419153_SNP [dm6]	T	G	4.667e^-4	0.889	INTRON CG9812
3L	14276119	3L_14276119_SNP [dm3] 3L_14283019_SNP [dm6]	C	T	4.667e^-4	0.889	INTRON fz	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15065123	2L_15065123_SNP [dm3] 2L_15065123_SNP [dm6]	A	C	4.699e^-4	0.889	INTRON vas & 1 other
2R	18000322	2R_18000322_SNP [dm3] 2R_22112817_SNP [dm6]	A	G	4.705e^-4	0.889	UPSTREAM CG30280 & 1 other INTRON Vrp1
2R	2459447	2R_2459447_SNP [dm3] 2R_6571942_SNP [dm6]	T	C	4.707e^-4	0.889	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	19400313	2L_19400313_SNP [dm3] 2L_19400313_SNP [dm6]	A	C	4.708e^-4	0.889	DOWNSTREAM Pax INTERGENIC
X	21890342	X_21890342_SNP [dm3] X_22488506_SNP [dm6]	T	C	4.708e^-4	0.889	INTRON l_1_G0196 EXON CR43493
X	15007567	X_15007567_SNP [dm3] X_15113534_SNP [dm6]	C	T	4.711e^-4	0.889	UTR_3_PRIME Rab3-GEF & 1 other
2R	19707256	2R_19707256_SNP [dm3] 2R_23819733_SNP [dm6]	T	C	4.722e^-4	0.889	UPSTREAM CG5549 INTERGENIC
X	15455818	X_15455818_SNP [dm3] X_15561785_SNP [dm6]	G	A	4.756e^-4	0.889	INTERGENIC
X	15455827	X_15455827_SNP [dm3] X_15561794_SNP [dm6]	G	T	4.756e^-4	0.889	INTERGENIC
3R	23608768	3R_23608768_SNP [dm3] 3R_27783046_SNP [dm6]	A	G	4.760e^-4	0.889	INTRON CG34353
2L	6947007	2L_6947007_SNP [dm3] 2L_6947007_SNP [dm6]	A	T	4.765e^-4	0.889	SYNONYMOUS_CODING ihog	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9530792	2R_9530792_SNP [dm3] 2R_13643287_SNP [dm6]	A	G	4.767e^-4	0.889	INTRON fas
2L	4243180	2L_4243180_SNP [dm3] 2L_4243180_SNP [dm6]	C	T	4.768e^-4	0.889	DOWNSTREAM CR44058 INTERGENIC
3R	14453034	3R_14453034_SNP [dm3] 3R_18627312_SNP [dm6]	C	T	4.781e^-4	0.889	INTRON qin
X	11175918	X_11175918_SNP [dm3] X_11281885_SNP [dm6]	A	G	4.785e^-4	0.889	INTRON CG44422
2R	1418684	2R_1418684_SNP [dm3] 2R_5531179_SNP [dm6]	G	T	4.790e^-4	0.889	INTRON CG30438
2L	6946938	2L_6946938_SNP [dm3] 2L_6946938_SNP [dm6]	C	A	4.790e^-4	0.889	SYNONYMOUS_CODING ihog	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6946971	2L_6946971_SNP [dm3] 2L_6946971_SNP [dm6]	T	C	4.790e^-4	0.889	SYNONYMOUS_CODING ihog	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13458957	X_13458957_SNP [dm3] X_13564924_SNP [dm6]	T	G	4.792e^-4	0.889	INTRON Tango13	TF binding site BDTNP1_TFBS_dl
3L	2975540	3L_2975540_SNP [dm3] 3L_2975540_SNP [dm6]	T	A	4.794e^-4	0.889	EXON CR44530
2R	20879001	2R_20879001_SNP [dm3] 2R_24991478_SNP [dm6]	A	G	4.795e^-4	0.889	DOWNSTREAM CG3829 INTRON zip
3L	16074909	3L_16074909_SNP [dm3] 3L_16081809_SNP [dm6]	A	T	4.797e^-4	0.889	UTR_3_PRIME Mbs UPSTREAM CG33258 DOWNSTREAM Mbs
X	10409609	X_10409609_SNP [dm3] X_10515576_SNP [dm6]	A	T	4.797e^-4	0.889	INTRON spri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14208167	3R_14208167_SNP [dm3] 3R_18382445_SNP [dm6]	A	G	4.805e^-4	0.889	NON_SYNONYMOUS_CODING CG14309	TF binding site mE1_TFBS_cad
X	15422541	X_15422541_SNP [dm3] X_15528508_SNP [dm6]	C	T	4.808e^-4	0.889	INTRON Ac13E
3L	20478566	3L_20478566_SNP [dm3] 3L_20485466_SNP [dm6]	T	C	4.825e^-4	0.889	INTRON ZnT77C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15815600	X_15815600_DEL [dm3] X_15921567_DEL [dm6]	TT	T	4.825e^-4	0.889	UPSTREAM CG8916 DOWNSTREAM CG8909 INTERGENIC
3L	16805638	3L_16805638_SNP [dm3] 3L_16812538_SNP [dm6]	T	G	4.825e^-4	0.889	UPSTREAM CG13024 INTRON nudC & 1 other	TF binding site BDTNP1_TFBS_Med
3R	22894448	3R_22894448_SNP [dm3] 3R_27068726_SNP [dm6]	T	C	4.831e^-4	0.889	INTRON spz
3L	15007431	3L_15007431_SNP [dm3] 3L_15014331_SNP [dm6]	C	T	4.837e^-4	0.889	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	13008620	3L_13008620_SNP [dm3] 3L_13015520_SNP [dm6]	C	G	4.849e^-4	0.889	UPSTREAM CG11267 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	11490218	3R_11490218_SNP [dm3] 3R_15664496_SNP [dm6]	G	A	4.850e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7823361	2R_7823361_SNP [dm3] 2R_11935856_SNP [dm6]	A	T	4.856e^-4	0.889	INTERGENIC
3R	14207668	3R_14207668_SNP [dm3] 3R_18381946_SNP [dm6]	A	G	4.856e^-4	0.889	UTR_3_PRIME CG14309 UPSTREAM CG7675	TF binding site mE1_TFBS_cad
2L	20686861	2L_20686861_SNP [dm3] 2L_20686861_SNP [dm6]	C	T	4.856e^-4	0.889	SYNONYMOUS_CODING Hr38	TF binding site mE1_TFBS_cad
3R	25405931	3R_25405931_SNP [dm3] 3R_29580209_SNP [dm6]	A	G	4.858e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	18599391	3R_18599391_SNP [dm3] 3R_22773669_SNP [dm6]	T	C	4.861e^-4	0.889	UPSTREAM mir-4953 INTRON Usp12-46 & 1 other
2L	16522777	2L_16522777_SNP [dm3] 2L_16522777_SNP [dm6]	T	C	4.864e^-4	0.889	INTRON CG5953	TF binding site BDTNP1_TFBS_dl
2R	16508220	2R_16508220_SNP [dm3] 2R_20620715_SNP [dm6]	A	C	4.870e^-4	0.889	SYNONYMOUS_CODING CG9945 DOWNSTREAM CG11180
X	11693626	X_11693626_INS [dm3] X_11799593_INS [dm6]	A	ATACATATCGA...	4.887e^-4	0.889	DOWNSTREAM CkIIbeta INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb
X	6525715	X_6525715_SNP [dm3] X_6631682_SNP [dm6]	C	G	4.890e^-4	0.889	INTRON pigs	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	6525722	X_6525722_SNP [dm3] X_6631689_SNP [dm6]	G	A	4.890e^-4	0.889	INTRON pigs	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	2800688	2L_2800688_SNP [dm3] 2L_2800688_SNP [dm6]	T	A	4.895e^-4	0.889	UPSTREAM Syt1 INTERGENIC
2R	19466072	2R_19466072_SNP [dm3] 2R_23578549_SNP [dm6]	T	C	4.896e^-4	0.889	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	21969359	2L_21969359_SNP [dm3] 2L_21969359_SNP [dm6]	G	T	4.900e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	3422153	X_3422153_SNP [dm3] X_3528120_SNP [dm6]	A	G	4.901e^-4	0.889	INTRON CG32791
3L	9559513	3L_9559513_SNP [dm3] 3L_9566413_SNP [dm6]	A	T	4.912e^-4	0.889	INTRON CG42673
X	4532835	X_4532835_SNP [dm3] X_4638802_SNP [dm6]	T	A	4.914e^-4	0.889	UTR_3_PRIME pon DOWNSTREAM CG3081	TF binding site mE1_TFBS_cad
3L	3787055	3L_3787055_SNP [dm3] 3L_3787055_SNP [dm6]	A	T	4.926e^-4	0.889	INTRON CG32264	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7852183	3L_7852183_SNP [dm3] 3L_7859083_SNP [dm6]	T	A	4.930e^-4	0.889	INTRON Pdp1
3L	9382158	3L_9382158_SNP [dm3] 3L_9389058_SNP [dm6]	C	A	4.933e^-4	0.889	SYNONYMOUS_CODING CG4080	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	20478505	3L_20478505_SNP [dm3] 3L_20485405_SNP [dm6]	G	T	4.935e^-4	0.889	SYNONYMOUS_CODING ZnT77C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6955767	2L_6955767_SNP [dm3] 2L_6955767_SNP [dm6]	T	G	4.936e^-4	0.889	SYNONYMOUS_CODING CG13775	TF binding site mE1_TFBS_sens
X	15453787	X_15453787_SNP [dm3] X_15559754_SNP [dm6]	T	C	4.945e^-4	0.889	INTERGENIC
3L	5514221	3L_5514221_SNP [dm3] 3L_5521121_SNP [dm6]	A	G	4.970e^-4	0.889	INTRON Lkr
3R	4358303	3R_4358303_SNP [dm3] 3R_8532581_SNP [dm6]	T	C	4.975e^-4	0.889	INTERGENIC
X	6178419	X_6178419_SNP [dm3] X_6284386_SNP [dm6]	T	G	4.987e^-4	0.889	UTR_3_PRIME Top3beta UPSTREAM CG11700 DOWNSTREAM Top3beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	4165316	2L_4165316_SNP [dm3] 2L_4165316_SNP [dm6]	T	C	4.988e^-4	0.889	SYNONYMOUS_CODING Or24a
3L	11080142	3L_11080142_SNP [dm3] 3L_11087042_SNP [dm6]	C	T	5.011e^-4	0.889	INTRON JIL-1	TF binding site BDTNP1_TFBS_twi
X	6279776	X_6279776_SNP [dm3] X_6385743_SNP [dm6]	T	G	5.025e^-4	0.889	DOWNSTREAM CG33664 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	15433859	3L_15433859_SNP [dm3] 3L_15440759_SNP [dm6]	A	T	5.034e^-4	0.889	INTERGENIC
3L	14978512	3L_14978512_SNP [dm3] 3L_14985412_SNP [dm6]	A	G	5.046e^-4	0.889	DOWNSTREAM CG5114 INTRON mnd	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	7982843	X_7982843_SNP [dm3] X_8088810_SNP [dm6]	G	T	5.047e^-4	0.889	UTR_3_PRIME Ubc-E2H	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17730539	2R_17730539_SNP [dm3] 2R_21843034_SNP [dm6]	A	G	5.061e^-4	0.889	DOWNSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10300280	3R_10300280_SNP [dm3] 3R_14474558_SNP [dm6]	A	G	5.076e^-4	0.889	INTRON cv-c	TF binding site mE1_TFBS_cad
X	7106273	X_7106273_SNP [dm3] X_7212240_SNP [dm6]	C	T	5.077e^-4	0.889	INTRON CR44357 & 1 other
2R	7795137	2R_7795137_SNP [dm3] 2R_11907632_SNP [dm6]	G	A	5.103e^-4	0.889	INTRON CG13183
2L	8879455	2L_8879455_SNP [dm3] 2L_8879455_SNP [dm6]	T	A	5.110e^-4	0.889	INTERGENIC
2R	5915863	2R_5915863_SNP [dm3] 2R_10028358_SNP [dm6]	C	G	5.120e^-4	0.889	NON_SYNONYMOUS_CODING CG12128 DOWNSTREAM CG1407
2L	19289005	2L_19289005_SNP [dm3] 2L_19289005_SNP [dm6]	T	C	5.121e^-4	0.889	INTERGENIC
2R	20431066	2R_20431066_SNP [dm3] 2R_24543543_SNP [dm6]	T	A	5.142e^-4	0.889	UPSTREAM ITP INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	2800606	2L_2800606_SNP [dm3] 2L_2800606_SNP [dm6]	A	C	5.142e^-4	0.889	UPSTREAM Syt1 INTERGENIC
2L	2800622	2L_2800622_SNP [dm3] 2L_2800622_SNP [dm6]	G	A	5.142e^-4	0.889	UPSTREAM Syt1 INTERGENIC
3R	9582886	3R_9582886_SNP [dm3] 3R_13757164_SNP [dm6]	T	A	5.162e^-4	0.889	INTRON CG34383
3L	20269879	3L_20269879_SNP [dm3] 3L_20276779_SNP [dm6]	G	A	5.167e^-4	0.889	INTRON gogo
3L	3949435	3L_3949435_SNP [dm3] 3L_3949435_SNP [dm6]	T	A	5.187e^-4	0.889	UPSTREAM CG14983 DOWNSTREAM CG10853 INTERGENIC
3L	5789902	3L_5789902_SNP [dm3] 3L_5796802_SNP [dm6]	A	G	5.204e^-4	0.889	UPSTREAM Tektin-C DOWNSTREAM S6k INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
3L	9094933	3L_9094933_SNP [dm3] 3L_9101833_SNP [dm6]	C	T	5.210e^-4	0.889	UTR_3_PRIME bol
3L	20277450	3L_20277450_DEL [dm3] 3L_20284350_DEL [dm6]	GG	G	5.214e^-4	0.889	INTRON gogo
3R	25595061	3R_25595061_SNP [dm3] 3R_29769339_SNP [dm6]	G	C	5.259e^-4	0.889	INTRON kay
2L	21326181	2L_21326181_SNP [dm3] 2L_21326181_SNP [dm6]	G	C	5.273e^-4	0.889	UPSTREAM CR42696 INTERGENIC
3R	14506930	3R_14506930_SNP [dm3] 3R_18681208_SNP [dm6]	G	T	5.305e^-4	0.889	UTR_5_PRIME CG7708 DOWNSTREAM CG7706
2L	18547211	2L_18547211_SNP [dm3] 2L_18547211_SNP [dm6]	G	T	5.320e^-4	0.889	INTRON Pde11
X	17445230	X_17445230_DEL [dm3] X_17551197_DEL [dm6]	TT	T	5.389e^-4	0.889	INTRON CG43658
3L	5167919	3L_5167919_SNP [dm3] 3L_5174819_SNP [dm6]	A	T	5.405e^-4	0.889	INTRON shep
3L	7426322	3L_7426322_SNP [dm3] 3L_7433222_SNP [dm6]	T	C	5.406e^-4	0.889	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	10483822	3L_10483822_SNP [dm3] 3L_10490722_SNP [dm6]	A	T	5.419e^-4	0.889	UPSTREAM S-Lap4 INTRON A2bp1
3R	3444430	3R_3444430_SNP [dm3] 3R_7618708_SNP [dm6]	T	C	5.420e^-4	0.889	INTRON CG34127
3R	3445282	3R_3445282_SNP [dm3] 3R_7619560_SNP [dm6]	T	C	5.420e^-4	0.889	INTRON CG34127
2L	15360214	2L_15360214_SNP [dm3] 2L_15360214_SNP [dm6]	T	C	5.469e^-4	0.889	DOWNSTREAM CG15258 INTERGENIC
2L	15360225	2L_15360225_SNP [dm3] 2L_15360225_SNP [dm6]	C	T	5.469e^-4	0.889	DOWNSTREAM CG15258 INTERGENIC
2L	2731894	2L_2731894_SNP [dm3] 2L_2731894_SNP [dm6]	T	A	5.469e^-4	0.889	INTRON CG31689
2L	6095233	2L_6095233_SNP [dm3] 2L_6095233_SNP [dm6]	A	T	5.469e^-4	0.889	INTRON Kr-h1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13641708	2R_13641708_SNP [dm3] 2R_17754203_SNP [dm6]	G	A	5.469e^-4	0.889	SYNONYMOUS_CODING CG6385 DOWNSTREAM CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13641729	2R_13641729_SNP [dm3] 2R_17754224_SNP [dm6]	G	A	5.469e^-4	0.889	SYNONYMOUS_CODING CG6385	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3210770	2R_3210770_SNP [dm3] 2R_7323265_SNP [dm6]	A	G	5.469e^-4	0.889	SYNONYMOUS_CODING Dscam1
3L	1983024	3L_1983024_SNP [dm3] 3L_1983024_SNP [dm6]	G	T	5.469e^-4	0.889	INTERGENIC
X	6282599	X_6282599_SNP [dm3] X_6388566_SNP [dm6]	G	A	5.469e^-4	0.889	INTERGENIC
X	6337782	X_6337782_DEL [dm3] X_6443749_DEL [dm6]	GTATTGTCC	A	5.469e^-4	0.889	INTRON CG42340
X	6337823	X_6337823_DEL [dm3] X_6443790_DEL [dm6]	CAA	TT	5.469e^-4	0.889	INTRON CG42340
2L	18499540	2L_18499540_SNP [dm3] 2L_18499540_SNP [dm6]	A	G	5.475e^-4	0.889	INTRON kon
2R	17750945	2R_17750945_SNP [dm3] 2R_21863440_SNP [dm6]	A	C	5.476e^-4	0.889	INTERGENIC
2R	19469739	2R_19469739_SNP [dm3] 2R_23582216_SNP [dm6]	A	G	5.478e^-4	0.889	INTRON apt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	7322598	2R_7322598_SNP [dm3] 2R_11435093_SNP [dm6]	G	T	5.490e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	9714738	2R_9714738_SNP [dm3] 2R_13827233_SNP [dm6]	A	C	5.490e^-4	0.889	UTR_5_PRIME CG6329 INTRON CG6329	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	6528543	3L_6528543_SNP [dm3] 3L_6535443_SNP [dm6]	C	T	5.490e^-4	0.889	INTRON sfl
3L	6529011	3L_6529011_SNP [dm3] 3L_6535911_SNP [dm6]	T	C	5.490e^-4	0.889	INTRON sfl
3L	12213899	3L_12213899_SNP [dm3] 3L_12220799_SNP [dm6]	G	C	5.502e^-4	0.889	START_GAINED app UTR_5_PRIME app
3R	14818810	3R_14818810_SNP [dm3] 3R_18993088_SNP [dm6]	C	T	5.507e^-4	0.889	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	22296444	2L_22296444_SNP [dm3] 2L_22296444_SNP [dm6]	C	T	5.509e^-4	0.889	INTERGENIC	transposable element FlyBase
3R	14212149	3R_14212149_SNP [dm3] 3R_18386427_SNP [dm6]	G	T	5.517e^-4	0.889	DOWNSTREAM Vha100-4 INTRON cona
3R	14212543	3R_14212543_SNP [dm3] 3R_18386821_SNP [dm6]	A	G	5.517e^-4	0.889	UTR_3_PRIME cona DOWNSTREAM Vha100-4
3R	23401803	3R_23401803_SNP [dm3] 3R_27576081_SNP [dm6]	A	C	5.522e^-4	0.889	INTRON wdb
2R	10249498	2R_10249498_SNP [dm3] 2R_14361993_SNP [dm6]	T	G	5.526e^-4	0.889	UTR_5_PRIME Arc2 UPSTREAM CR10102
2L	18911732	2L_18911732_SNP [dm3] 2L_18911732_SNP [dm6]	G	C	5.530e^-4	0.889	INTERGENIC
3L	16623695	3L_16623695_SNP [dm3] 3L_16630595_SNP [dm6]	A	T	5.534e^-4	0.889	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	12040965	3R_12040965_SNP [dm3] 3R_16215243_SNP [dm6]	T	C	5.540e^-4	0.889	DOWNSTREAM CR45641 INTERGENIC
X	14430324	X_14430324_DEL [dm3] X_14536291_DEL [dm6]	TTC	G	5.545e^-4	0.889	INTERGENIC
2L	2800765	2L_2800765_SNP [dm3] 2L_2800765_SNP [dm6]	T	C	5.570e^-4	0.889	UPSTREAM Syt1 INTERGENIC
2L	7994662	2L_7994662_SNP [dm3] 2L_7994662_SNP [dm6]	T	G	5.573e^-4	0.889	UTR_3_PRIME CG7227 UPSTREAM CR44996 & 1 other DOWNSTREAM CG7227	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
2R	5909148	2R_5909148_SNP [dm3] 2R_10021643_SNP [dm6]	C	T	5.576e^-4	0.889	INTRON Pka-R2
3L	11143689	3L_11143689_SNP [dm3] 3L_11150589_SNP [dm6]	C	T	5.583e^-4	0.889	NON_SYNONYMOUS_CODING CG6216 INTRON CG32082
2R	12701810	2R_12701810_SNP [dm3] 2R_16814305_SNP [dm6]	C	A	5.595e^-4	0.889	DOWNSTREAM CR44380 INTERGENIC
X	3024767	X_3024767_SNP [dm3] X_3130734_SNP [dm6]	C	T	5.597e^-4	0.889	INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1831948	2L_1831948_SNP [dm3] 2L_1831948_SNP [dm6]	A	G	5.619e^-4	0.889	SYNONYMOUS_CODING c-cup UPSTREAM mir-2280
3L	9156469	3L_9156469_SNP [dm3] 3L_9163369_SNP [dm6]	G	A	5.636e^-4	0.889	INTRON Rdl
2L	3263247	2L_3263247_SNP [dm3] 2L_3263247_SNP [dm6]	A	G	5.643e^-4	0.889	DOWNSTREAM CR45706 INTERGENIC
2L	18993628	2L_18993628_SNP [dm3] 2L_18993628_SNP [dm6]	A	G	5.654e^-4	0.889	UTR_3_PRIME CG10650	TF binding site mE1_TFBS_cad
X	15010674	X_15010674_SNP [dm3] X_15116641_SNP [dm6]	C	A	5.667e^-4	0.889	UPSTREAM Cyp4s3 INTERGENIC
3R	14211274	3R_14211274_SNP [dm3] 3R_18385552_SNP [dm6]	G	C	5.671e^-4	0.889	UPSTREAM cona & 1 other INTERGENIC
X	12609444	X_12609444_SNP [dm3] X_12715411_SNP [dm6]	A	T	5.679e^-4	0.889	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	19085590	2L_19085590_SNP [dm3] 2L_19085590_SNP [dm6]	A	G	5.680e^-4	0.889	INTRON Lim3
3L	16075139	3L_16075139_SNP [dm3] 3L_16082039_SNP [dm6]	G	A	5.682e^-4	0.889	UPSTREAM CG33258 DOWNSTREAM Mbs INTERGENIC
3L	3825681	3L_3825681_SNP [dm3] 3L_3825681_SNP [dm6]	T	A	5.701e^-4	0.889	UTR_3_PRIME Rdh INTRON enc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14289107	3L_14289107_SNP [dm3] 3L_14296007_SNP [dm6]	C	G	5.702e^-4	0.889	INTRON fz
2R	9654713	2R_9654713_SNP [dm3] 2R_13767208_SNP [dm6]	C	T	5.745e^-4	0.889	INTERGENIC
2R	9654721	2R_9654721_SNP [dm3] 2R_13767216_SNP [dm6]	T	C	5.745e^-4	0.889	INTERGENIC
2R	9654728	2R_9654728_SNP [dm3] 2R_13767223_SNP [dm6]	A	C	5.745e^-4	0.889	INTERGENIC
2R	9654839	2R_9654839_DEL [dm3] 2R_13767334_DEL [dm6]	TT	T	5.745e^-4	0.889	INTERGENIC
3R	16787141	3R_16787141_SNP [dm3] 3R_20961419_SNP [dm6]	A	C	5.748e^-4	0.889	INTRON Atpalpha
X	2805753	X_2805753_SNP [dm3] X_2911720_SNP [dm6]	G	A	5.749e^-4	0.889	INTRON kirre
X	6281789	X_6281789_SNP [dm3] X_6387756_SNP [dm6]	A	T	5.756e^-4	0.889	INTERGENIC
2R	13914654	2R_13914654_SNP [dm3] 2R_18027149_SNP [dm6]	T	G	5.757e^-4	0.889	INTERGENIC
3R	3577699	3R_3577699_SNP [dm3] 3R_7751977_SNP [dm6]	A	G	5.761e^-4	0.889	INTERGENIC
2R	20307892	2R_20307892_SNP [dm3] 2R_24420369_SNP [dm6]	T	C	5.773e^-4	0.889	SYNONYMOUS_CODING prom	TF binding site mE1_TFBS_chinmo
3L	8689931	3L_8689931_SNP [dm3] 3L_8696831_SNP [dm6]	T	C	5.790e^-4	0.889	INTERGENIC
2R	10776420	2R_10776420_SNP [dm3] 2R_14888915_SNP [dm6]	G	A	5.792e^-4	0.889	SYNONYMOUS_CODING Cyp6a8	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	17998384	3L_17998384_SNP [dm3] 3L_18005284_SNP [dm6]	A	G	5.793e^-4	0.889	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	22300625	3R_22300625_SNP [dm3] 3R_26474903_SNP [dm6]	A	G	5.797e^-4	0.889	INTRON plum	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9925950	2R_9925950_SNP [dm3] 2R_14038445_SNP [dm6]	A	C	5.797e^-4	0.889	INTRON mam
3L	16784820	3L_16784820_SNP [dm3] 3L_16791720_SNP [dm6]	G	A	5.797e^-4	0.889	UTR_3_PRIME CG9674 INTRON CG9674	TF binding site mE1_TFBS_cad
X	5161176	X_5161176_SNP [dm3] X_5267143_SNP [dm6]	G	A	5.797e^-4	0.889	INTERGENIC
X	5591430	X_5591430_SNP [dm3] X_5697397_SNP [dm6]	G	C	5.797e^-4	0.889	EXON CR42794	TF binding site BDTNP1_TFBS_dl
2R	13803014	2R_13803014_SNP [dm3] 2R_17915509_SNP [dm6]	T	C	5.801e^-4	0.889	INTRON Elk
3R	4278815	3R_4278815_SNP [dm3] 3R_8453093_SNP [dm6]	T	G	5.809e^-4	0.889	INTRON CG45263
3L	22976125	3L_22976125_SNP [dm3] 3L_22983025_SNP [dm6]	C	T	5.811e^-4	0.889	INTERGENIC
X	13309788	X_13309788_SNP [dm3] X_13415755_SNP [dm6]	T	C	5.821e^-4	0.889	SYNONYMOUS_CODING Set2
3L	7877529	3L_7877529_SNP [dm3] 3L_7884429_SNP [dm6]	A	G	5.826e^-4	0.889	INTRON CG32365
X	7145515	X_7145515_SNP [dm3] X_7251482_SNP [dm6]	G	A	5.831e^-4	0.889	INTRON CR44357	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	14272181	2R_14272181_SNP [dm3] 2R_18384676_SNP [dm6]	C	G	5.839e^-4	0.889	NON_SYNONYMOUS_CODING CG18107 DOWNSTREAM CG15067 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14377305	3L_14377305_SNP [dm3] 3L_14384205_SNP [dm6]	T	A	5.846e^-4	0.889	DOWNSTREAM CG43120 INTERGENIC
3L	14339827	3L_14339827_SNP [dm3] 3L_14346727_SNP [dm6]	A	T	5.853e^-4	0.889	INTRON fz
3R	15837157	3R_15837157_SNP [dm3] 3R_20011435_SNP [dm6]	A	C	5.862e^-4	0.889	SYNONYMOUS_CODING MED25 DOWNSTREAM CG17190	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12345787	3L_12345787_SNP [dm3] 3L_12352687_SNP [dm6]	A	G	5.867e^-4	0.889	INTERGENIC
2R	18962465	2R_18962465_SNP [dm3] 2R_23074942_SNP [dm6]	T	C	5.872e^-4	0.889	UPSTREAM snoRNA:229 & 2 others INTRON CG3085	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3892227	3L_3892227_SNP [dm3] 3L_3892227_SNP [dm6]	G	T	5.874e^-4	0.889	UPSTREAM Fie & 1 other DOWNSTREAM snRNA:U11 INTERGENIC
2L	21148278	2L_21148278_SNP [dm3] 2L_21148278_SNP [dm6]	T	A	5.876e^-4	0.889	NON_SYNONYMOUS_CODING del	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14760035	3R_14760035_SNP [dm3] 3R_18934313_SNP [dm6]	T	C	5.879e^-4	0.889	INTRON CG42613
3R	12231356	3R_12231356_SNP [dm3] 3R_16405634_SNP [dm6]	C	T	5.884e^-4	0.889	INTERGENIC
2R	18546767	2R_18546767_SNP [dm3] 2R_22659262_SNP [dm6]	A	G	5.889e^-4	0.889	UTR_5_PRIME CG13511 & 1 other UTR_3_PRIME CG13510 UPSTREAM CG13511 DOWNSTREAM CG13510
2R	12523548	2R_12523548_SNP [dm3] 2R_16636043_SNP [dm6]	C	T	5.897e^-4	0.889	INTRON Alk	TF binding site BDTNP1_TFBS_dl
2R	12523552	2R_12523552_SNP [dm3] 2R_16636047_SNP [dm6]	A	G	5.897e^-4	0.889	INTRON Alk	TF binding site BDTNP1_TFBS_dl
3R	14454164	3R_14454164_SNP [dm3] 3R_18628442_SNP [dm6]	C	T	5.940e^-4	0.889	DOWNSTREAM tRNA:CR31228 & 1 other INTRON qin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2801062	2L_2801062_DEL [dm3] 2L_2801062_DEL [dm6]	CT	C	5.943e^-4	0.889	INTERGENIC
2R	8504567	2R_8504567_SNP [dm3] 2R_12617062_SNP [dm6]	C	T	5.953e^-4	0.889	INTRON Galphaq & 1 other
2R	8175918	2R_8175918_SNP [dm3] 2R_12288413_SNP [dm6]	C	A	5.956e^-4	0.889	INTRON CG42700
3L	1393795	3L_1393795_SNP [dm3] 3L_1393795_SNP [dm6]	A	T	5.957e^-4	0.889	INTRON Ptp61F
X	3515511	X_3515511_SNP [dm3] X_3621478_SNP [dm6]	T	A	5.960e^-4	0.889	INTRON AstA-R1
3R	26269371	3R_26269371_SNP [dm3] 3R_30443649_SNP [dm6]	T	C	5.970e^-4	0.889	UPSTREAM CG15537 DOWNSTREAM Osi23 INTERGENIC
3L	602803	3L_602803_SNP [dm3] 3L_602803_SNP [dm6]	A	G	5.993e^-4	0.889	INTRON CG13893
3R	26382859	3R_26382859_INS [dm3] 3R_30557137_INS [dm6]	G	GC	6.019e^-4	0.889	INTRON tmod & 1 other
2R	13844529	2R_13844529_SNP [dm3] 2R_17957024_SNP [dm6]	C	T	6.031e^-4	0.889	UPSTREAM PpY-55A INTERGENIC
3L	1853244	3L_1853244_SNP [dm3] 3L_1853244_SNP [dm6]	G	A	6.031e^-4	0.889	INTRON CG13936
3R	9633631	3R_9633631_SNP [dm3] 3R_13807909_SNP [dm6]	T	A	6.031e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	4287689	X_4287689_SNP [dm3] X_4393656_SNP [dm6]	G	A	6.031e^-4	0.889	INTRON CR32773
2R	2401176	2R_2401176_SNP [dm3] 2R_6513671_SNP [dm6]	T	G	6.052e^-4	0.889	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	24548195	3R_24548195_SNP [dm3] 3R_28722473_SNP [dm6]	C	T	6.053e^-4	0.889	INTRON htt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12089145	3L_12089145_SNP [dm3] 3L_12096045_SNP [dm6]	C	G	6.055e^-4	0.889	INTERGENIC
2L	19408965	2L_19408965_SNP [dm3] 2L_19408965_SNP [dm6]	G	A	6.057e^-4	0.889	INTRON Pax
2L	2491973	2L_2491973_SNP [dm3] 2L_2491973_SNP [dm6]	A	G	6.057e^-4	0.889	SYNONYMOUS_CODING Slh UPSTREAM oaf	enhancer FlyBase TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1843730	3L_1843730_SNP [dm3] 3L_1843730_SNP [dm6]	T	C	6.057e^-4	0.889	INTERGENIC
3R	14272871	3R_14272871_SNP [dm3] 3R_18447149_SNP [dm6]	T	C	6.057e^-4	0.889	UTR_5_PRIME fru INTRON fru
2L	7994660	2L_7994660_SNP [dm3] 2L_7994660_SNP [dm6]	G	T	6.069e^-4	0.889	UTR_3_PRIME CG7227 UPSTREAM CR44996 & 1 other DOWNSTREAM CG7227	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
2L	8822921	2L_8822921_SNP [dm3] 2L_8822921_SNP [dm6]	T	A	6.069e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8822925	2L_8822925_SNP [dm3] 2L_8822925_SNP [dm6]	G	C	6.069e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18754927	3R_18754927_SNP [dm3] 3R_22929205_SNP [dm6]	T	A	6.076e^-4	0.889	INTRON klg
2L	7238202	2L_7238202_SNP [dm3] 2L_7238202_SNP [dm6]	T	G	6.102e^-4	0.889	INTRON Ndae1
3L	11413710	3L_11413710_SNP [dm3] 3L_11420610_SNP [dm6]	G	T	6.102e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5701860	2R_5701860_SNP [dm3] 2R_9814355_SNP [dm6]	T	C	6.107e^-4	0.889	INTRON CG1648
3L	7852125	3L_7852125_SNP [dm3] 3L_7859025_SNP [dm6]	T	C	6.112e^-4	0.889	INTRON Pdp1
X	10763007	X_10763007_SNP [dm3] X_10868974_SNP [dm6]	G	A	6.116e^-4	0.889	UPSTREAM CG2157 INTERGENIC
X	10763015	X_10763015_SNP [dm3] X_10868982_SNP [dm6]	T	A	6.116e^-4	0.889	UPSTREAM CG2157 INTERGENIC
X	10763023	X_10763023_SNP [dm3] X_10868990_SNP [dm6]	A	T	6.116e^-4	0.889	UPSTREAM CG2157 INTERGENIC
3R	16736554	3R_16736554_SNP [dm3] 3R_20910832_SNP [dm6]	G	T	6.117e^-4	0.889	UTR_3_PRIME CG31191 UPSTREAM CR44106
3R	4282081	3R_4282081_SNP [dm3] 3R_8456359_SNP [dm6]	C	G	6.124e^-4	0.889	INTRON CG45263
3R	4282131	3R_4282131_SNP [dm3] 3R_8456409_SNP [dm6]	G	A	6.124e^-4	0.889	INTRON CG45263
3R	4282132	3R_4282132_SNP [dm3] 3R_8456410_SNP [dm6]	C	G	6.124e^-4	0.889	INTRON CG45263
X	20408222	X_20408222_DEL [dm3] X_20537195_DEL [dm6]	TGC	T	6.126e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15014551	2L_15014551_SNP [dm3] 2L_15014551_SNP [dm6]	A	C	6.137e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17338166	3L_17338166_SNP [dm3] 3L_17345066_SNP [dm6]	A	G	6.141e^-4	0.889	UTR_3_PRIME Mip UPSTREAM brv2
3R	13561793	3R_13561793_SNP [dm3] 3R_17736071_SNP [dm6]	T	C	6.142e^-4	0.889	UPSTREAM TyrRII INTERGENIC
2L	20872442	2L_20872442_SNP [dm3] 2L_20872442_SNP [dm6]	C	A	6.144e^-4	0.889	UTR_3_PRIME sky & 1 other DOWNSTREAM CG14401 & 1 other
2R	6137002	2R_6137002_DEL [dm3] 2R_10249497_DEL [dm6]	AA	A	6.161e^-4	0.889	UTR_3_PRIME Syb DOWNSTREAM CG12914 INTRON CG12913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	1344399	X_1344399_SNP [dm3] X_1450366_SNP [dm6]	G	A	6.169e^-4	0.889	UTR_3_PRIME futsch
X	10763111	X_10763111_SNP [dm3] X_10869078_SNP [dm6]	A	T	6.170e^-4	0.889	UPSTREAM CG2157 INTERGENIC
2L	15284832	2L_15284832_SNP [dm3] 2L_15284832_SNP [dm6]	G	A	6.184e^-4	0.889	UPSTREAM CG15263 INTERGENIC
2L	1266632	2L_1266632_SNP [dm3] 2L_1266632_SNP [dm6]	T	C	6.219e^-4	0.889	INTRON robo3
3L	2594782	3L_2594782_SNP [dm3] 3L_2594782_SNP [dm6]	G	A	6.226e^-4	0.889	SYNONYMOUS_CODING dos UPSTREAM CG16984	TF binding site mE1_TFBS_cad
3L	17973358	3L_17973358_SNP [dm3] 3L_17980258_SNP [dm6]	T	A	6.238e^-4	0.889	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	5167844	3L_5167844_SNP [dm3] 3L_5174744_SNP [dm6]	T	C	6.242e^-4	0.889	INTRON shep
3L	11413889	3L_11413889_SNP [dm3] 3L_11420789_SNP [dm6]	C	T	6.242e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16920103	3L_16920103_SNP [dm3] 3L_16927003_SNP [dm6]	A	C	6.244e^-4	0.889	INTRON CG13023
X	9189885	X_9189885_DEL [dm3] X_9295852_DEL [dm6]	TT	T	6.245e^-4	0.889	INTRON lz	TF binding site BDTNP1_TFBS_sna mE1_TFBS_Kr
3L	9603276	3L_9603276_SNP [dm3] 3L_9610176_SNP [dm6]	C	T	6.252e^-4	0.889	INTRON CG3280
2L	19403341	2L_19403341_SNP [dm3] 2L_19403341_SNP [dm6]	G	A	6.254e^-4	0.889	UTR_3_PRIME Pax DOWNSTREAM snmRNA:359 INTRON Pax	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
2R	15571309	2R_15571309_SNP [dm3] 2R_19683804_SNP [dm6]	C	G	6.294e^-4	0.889	UPSTREAM CG34198 EXON CR44505
3R	4050172	3R_4050172_SNP [dm3] 3R_8224450_SNP [dm6]	G	A	6.297e^-4	0.889	DOWNSTREAM CR45551 INTERGENIC	TF binding site mE1_TFBS_cad
3L	2609564	3L_2609564_SNP [dm3] 3L_2609564_SNP [dm6]	G	T	6.317e^-4	0.889	DOWNSTREAM Pxn INTRON Pxn	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1654715	2L_1654715_SNP [dm3] 2L_1654715_SNP [dm6]	T	A	6.341e^-4	0.889	INTRON chinmo
2L	6946914	2L_6946914_SNP [dm3] 2L_6946914_SNP [dm6]	A	C	6.343e^-4	0.889	SYNONYMOUS_CODING ihog	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16124705	3L_16124705_SNP [dm3] 3L_16131605_SNP [dm6]	T	C	6.350e^-4	0.889	START_GAINED Trs20 UTR_5_PRIME Trs20 UPSTREAM CG16838 DOWNSTREAM SsRbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	16124739	3L_16124739_SNP [dm3] 3L_16131639_SNP [dm6]	C	G	6.350e^-4	0.889	UPSTREAM CG16838 & 1 other DOWNSTREAM SsRbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	19470638	2R_19470638_SNP [dm3] 2R_23583115_SNP [dm6]	C	A	6.351e^-4	0.889	INTRON apt	TF binding site mE1_TFBS_HSA
X	8860097	X_8860097_SNP [dm3] X_8966064_SNP [dm6]	T	A	6.355e^-4	0.889	DOWNSTREAM mir-4964 INTRON rdgA
X	3515545	X_3515545_SNP [dm3] X_3621512_SNP [dm6]	G	T	6.359e^-4	0.889	INTRON AstA-R1
2L	6092821	2L_6092821_SNP [dm3] 2L_6092821_SNP [dm6]	G	T	6.363e^-4	0.889	INTRON Kr-h1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6092845	2L_6092845_SNP [dm3] 2L_6092845_SNP [dm6]	T	A	6.363e^-4	0.889	INTRON Kr-h1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6092961	2L_6092961_SNP [dm3] 2L_6092961_SNP [dm6]	C	G	6.363e^-4	0.889	INTRON Kr-h1 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8512983	3L_8512983_SNP [dm3] 3L_8519883_SNP [dm6]	C	T	6.363e^-4	0.889	STOP_GAINED GstO3 UPSTREAM se
3L	8513737	3L_8513737_SNP [dm3] 3L_8520637_SNP [dm6]	C	G	6.363e^-4	0.889	DOWNSTREAM GstO3 & 1 other INTRON se
3L	8514471	3L_8514471_SNP [dm3] 3L_8521371_SNP [dm6]	G	A	6.363e^-4	0.889	SYNONYMOUS_CODING se DOWNSTREAM GstO2	TF binding site mE1_TFBS_sens
X	21296321	X_21296321_SNP [dm3] X_21425294_SNP [dm6]	A	G	6.363e^-4	0.889	INTRON CG42343	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	21296328	X_21296328_SNP [dm3] X_21425301_SNP [dm6]	T	C	6.363e^-4	0.889	INTRON CG42343	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	21296346	X_21296346_SNP [dm3] X_21425319_SNP [dm6]	C	A	6.363e^-4	0.889	INTRON CG42343	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8619081	2R_8619081_SNP [dm3] 2R_12731576_SNP [dm6]	T	C	6.366e^-4	0.889	INTRON CG42663	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	11019549	2R_11019549_SNP [dm3] 2R_15132044_SNP [dm6]	G	C	6.366e^-4	0.889	INTRON chn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3R	14211468	3R_14211468_SNP [dm3] 3R_18385746_SNP [dm6]	C	A	6.369e^-4	0.889	UPSTREAM cona & 1 other INTERGENIC
2R	17980293	2R_17980293_SNP [dm3] 2R_22092788_SNP [dm6]	G	A	6.373e^-4	0.889	SYNONYMOUS_CODING CG11073 INTRON CG11073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14208127	3R_14208127_SNP [dm3] 3R_18382405_SNP [dm6]	A	G	6.376e^-4	0.889	SYNONYMOUS_CODING CG14309	TF binding site mE1_TFBS_cad
3L	5270580	3L_5270580_SNP [dm3] 3L_5277480_SNP [dm6]	C	G	6.380e^-4	0.889	INTRON shep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	20096749	2R_20096749_SNP [dm3] 2R_24209226_SNP [dm6]	A	G	6.411e^-4	0.889	INTERGENIC
2R	20096817	2R_20096817_SNP [dm3] 2R_24209294_SNP [dm6]	C	A	6.411e^-4	0.889	INTERGENIC
2R	11880043	2R_11880043_SNP [dm3] 2R_15992538_SNP [dm6]	T	A	6.417e^-4	0.889	UPSTREAM Pex11 DOWNSTREAM ATPCL INTRON CG8320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	14427802	X_14427802_DEL [dm3] X_14533769_DEL [dm6]	AG	A	6.421e^-4	0.889	INTERGENIC
2L	16731156	2L_16731156_SNP [dm3] 2L_16731156_SNP [dm6]	T	C	6.424e^-4	0.889	UTR_3_PRIME CG31812 UPSTREAM CG17996 DOWNSTREAM Prosbeta4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.187e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.063048
In_2R_NS	0.007203
In_3R_K	0.096116

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

620 significant hits at p-value < 0.001.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	17657738	2R_17657738_SNP [dm3] 2R_21770233_SNP [dm6]	C	T	1.973e^-6	0.997	DOWNSTREAM CG30395 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_inv
2L	10184176	2L_10184176_SNP [dm3] 2L_10184176_SNP [dm6]	T	C	2.266e^-6	0.997	INTRON Sur
2R	17657751	2R_17657751_DEL [dm3] 2R_21770246_DEL [dm6]	TT	T	2.378e^-6	0.997	DOWNSTREAM CG30395 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_inv
3L	11109549	3L_11109549_SNP [dm3] 3L_11116449_SNP [dm6]	A	G	6.010e^-6	0.997	SYNONYMOUS_CODING fd68A
3R	9333788	3R_9333788_SNP [dm3] 3R_13508066_SNP [dm6]	G	A	9.680e^-6	0.997	INTERGENIC
2R	17654143	2R_17654143_SNP [dm3] 2R_21766638_SNP [dm6]	G	C	1.019e^-5	0.997	SPLICE_SITE_REGION CG30395 SYNONYMOUS_CODING CG30395 INTRON CG30395
2R	17657833	2R_17657833_SNP [dm3] 2R_21770328_SNP [dm6]	A	T	1.637e^-5	0.997	DOWNSTREAM CG30395 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_inv
2R	16831980	2R_16831980_SNP [dm3] 2R_20944475_SNP [dm6]	A	G	1.654e^-5	0.997	INTRON Act57B	TF binding site mE1_TFBS_HSA
2R	6981149	2R_6981149_SNP [dm3] 2R_11093644_SNP [dm6]	T	A	1.665e^-5	0.997	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17657831	2R_17657831_SNP [dm3] 2R_21770326_SNP [dm6]	A	G	1.734e^-5	0.997	DOWNSTREAM CG30395 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_inv
3L	11110328	3L_11110328_SNP [dm3] 3L_11117228_SNP [dm6]	G	A	1.887e^-5	0.997	INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	8547099	3R_8547099_SNP [dm3] 3R_12721377_SNP [dm6]	C	G	1.908e^-5	0.997	UPSTREAM Men INTRON Men
2R	14325925	2R_14325925_SNP [dm3] 2R_18438420_SNP [dm6]	A	T	2.155e^-5	0.997	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12415636	3R_12415636_SNP [dm3] 3R_16589914_SNP [dm6]	T	C	2.191e^-5	0.997	INTERGENIC
2L	11122258	2L_11122258_SNP [dm3] 2L_11122258_SNP [dm6]	C	T	2.252e^-5	0.997	UPSTREAM CG14921 DOWNSTREAM Csl4 INTERGENIC
3L	8874445	3L_8874445_SNP [dm3] 3L_8881345_SNP [dm6]	A	G	2.672e^-5	0.997	INTRON dally
3R	8548244	3R_8548244_SNP [dm3] 3R_12722522_SNP [dm6]	G	C	2.842e^-5	0.997	UPSTREAM Men INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9410197	2R_9410197_SNP [dm3] 2R_13522692_SNP [dm6]	C	T	2.848e^-5	0.997	SYNONYMOUS_CODING CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11109687	3L_11109687_SNP [dm3] 3L_11116587_SNP [dm6]	A	C	3.048e^-5	0.997	INTRON fd68A
2R	17653939	2R_17653939_SNP [dm3] 2R_21766434_SNP [dm6]	T	A	3.072e^-5	0.997	INTRON CG30395
2R	17654101	2R_17654101_SNP [dm3] 2R_21766596_SNP [dm6]	A	T	3.072e^-5	0.997	INTRON CG30395
2R	8190735	2R_8190735_SNP [dm3] 2R_12303230_SNP [dm6]	C	G	3.465e^-5	0.997	NON_SYNONYMOUS_CODING SIP2 UTR_3_PRIME SIP2 UPSTREAM CG8850
2R	6981019	2R_6981019_SNP [dm3] 2R_11093514_SNP [dm6]	C	T	3.500e^-5	0.997	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6848523	2L_6848523_SNP [dm3] 2L_6848523_SNP [dm6]	G	T	3.866e^-5	0.997	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	16315052	2R_16315052_SNP [dm3] 2R_20427547_SNP [dm6]	A	T	4.325e^-5	0.997	INTRON CG12484
X	2826919	X_2826919_SNP [dm3] X_2932886_SNP [dm6]	C	T	4.495e^-5	0.997	DOWNSTREAM CG32793 INTRON kirre
2R	6720768	2R_6720768_SNP [dm3] 2R_10833263_SNP [dm6]	T	A	4.542e^-5	0.997	INTRON CG12344	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9337783	3R_9337783_SNP [dm3] 3R_13512061_SNP [dm6]	G	A	4.661e^-5	0.997	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17654081	2R_17654081_SNP [dm3] 2R_21766576_SNP [dm6]	C	T	5.809e^-5	0.997	NON_SYNONYMOUS_CODING CG30395 SPLICE_SITE_REGION CG30395 INTRON CG30395
2L	11122312	2L_11122312_SNP [dm3] 2L_11122312_SNP [dm6]	A	G	6.179e^-5	0.997	UPSTREAM CG14921 DOWNSTREAM Csl4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18988147	3R_18988147_SNP [dm3] 3R_23162425_SNP [dm6]	A	C	6.200e^-5	0.997	INTERGENIC
3R	17147398	3R_17147398_SNP [dm3] 3R_21321676_SNP [dm6]	T	G	6.672e^-5	0.997	INTRON CG16791	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10926541	2R_10926541_SNP [dm3] 2R_15039036_SNP [dm6]	A	C	6.995e^-5	0.997	SYNONYMOUS_CODING hbs	TF binding site BDTNP1_TFBS_sna
3L	7627580	3L_7627580_SNP [dm3] 3L_7634480_SNP [dm6]	C	A	7.455e^-5	0.997	INTRON CG33275
3L	8874449	3L_8874449_SNP [dm3] 3L_8881349_SNP [dm6]	A	G	7.985e^-5	0.997	INTRON dally
2R	19013161	2R_19013161_SNP [dm3] 2R_23125638_SNP [dm6]	T	G	8.007e^-5	0.997	SYNONYMOUS_CODING Klp59C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17371834	2R_17371834_SNP [dm3] 2R_21484329_SNP [dm6]	A	G	8.429e^-5	0.997	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8548881	3L_8548881_SNP [dm3] 3L_8555781_SNP [dm6]	T	C	8.429e^-5	0.997	UTR_5_PRIME rhea
2R	17655612	2R_17655612_SNP [dm3] 2R_21768107_SNP [dm6]	A	C	8.515e^-5	0.997	INTRON CG30395
2R	16281103	2R_16281103_SNP [dm3] 2R_20393598_SNP [dm6]	A	G	9.666e^-5	0.997	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16832158	2R_16832158_SNP [dm3] 2R_20944653_SNP [dm6]	G	C	9.671e^-5	0.997	INTRON Act57B	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	9333660	3R_9333660_SNP [dm3] 3R_13507938_SNP [dm6]	C	T	9.695e^-5	0.997	INTERGENIC
2L	10150721	2L_10150721_SNP [dm3] 2L_10150721_SNP [dm6]	T	C	9.782e^-5	0.997	INTRON CG44153 & 1 other
3R	8368164	3R_8368164_SNP [dm3] 3R_12542442_SNP [dm6]	A	G	1.006e^-4	0.997	INTRON Octbeta3R
2L	12349231	2L_12349231_SNP [dm3] 2L_12349231_SNP [dm6]	T	C	1.037e^-4	0.997	INTRON bru-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7589994	2L_7589994_SNP [dm3] 2L_7589994_SNP [dm6]	T	A	1.042e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	9348085	3R_9348085_SNP [dm3] 3R_13522363_SNP [dm6]	T	A	1.053e^-4	0.997	DOWNSTREAM CG12538 INTERGENIC
2L	20835462	2L_20835462_SNP [dm3] 2L_20835462_SNP [dm6]	T	G	1.066e^-4	0.997	INTRON Oseg5	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	27467482	3R_27467482_SNP [dm3] 3R_31641760_SNP [dm6]	T	A	1.091e^-4	0.997	INTRON kek6
3R	13627900	3R_13627900_SNP [dm3] 3R_17802178_SNP [dm6]	C	A	1.091e^-4	0.997	SYNONYMOUS_CODING CG17806 UPSTREAM CG17803	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	16832202	2R_16832202_SNP [dm3] 2R_20944697_SNP [dm6]	C	T	1.105e^-4	0.997	INTRON Act57B	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	18984007	3R_18984007_SNP [dm3] 3R_23158285_SNP [dm6]	G	C	1.110e^-4	0.997	SYNONYMOUS_CODING VhaAC39-2 UPSTREAM unk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_sens
3L	16033351	3L_16033351_SNP [dm3] 3L_16040251_SNP [dm6]	C	A	1.175e^-4	0.997	INTRON th	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	9585921	3R_9585921_SNP [dm3] 3R_13760199_SNP [dm6]	T	C	1.192e^-4	0.997	INTRON CG34383
2L	1105975	2L_1105975_SNP [dm3] 2L_1105975_SNP [dm6]	A	G	1.197e^-4	0.997	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad
2R	10926553	2R_10926553_SNP [dm3] 2R_15039048_SNP [dm6]	G	A	1.199e^-4	0.997	SYNONYMOUS_CODING hbs	TF binding site BDTNP1_TFBS_sna
3R	11201716	3R_11201716_SNP [dm3] 3R_15375994_SNP [dm6]	G	A	1.264e^-4	0.997	INTRON Rbp
3R	27467499	3R_27467499_SNP [dm3] 3R_31641777_SNP [dm6]	A	C	1.273e^-4	0.997	INTRON kek6
2L	313826	2L_313826_SNP [dm3] 2L_313826_SNP [dm6]	G	T	1.283e^-4	0.997	INTRON Plc21C	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	11104505	3R_11104505_SNP [dm3] 3R_15278783_SNP [dm6]	A	T	1.290e^-4	0.997	UPSTREAM MRG15 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13047126	3L_13047126_SNP [dm3] 3L_13054026_SNP [dm6]	A	T	1.320e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16832161	2R_16832161_SNP [dm3] 2R_20944656_SNP [dm6]	G	A	1.343e^-4	0.997	INTRON Act57B	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	7743926	3R_7743926_SNP [dm3] 3R_11918204_SNP [dm6]	G	T	1.347e^-4	0.997	INTRON Cad87A
2R	18833999	2R_18833999_SNP [dm3] 2R_22946476_SNP [dm6]	G	C	1.358e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18212447	3L_18212447_SNP [dm3] 3L_18219347_SNP [dm6]	G	C	1.361e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11096068	3R_11096068_SNP [dm3] 3R_15270346_SNP [dm6]	G	C	1.366e^-4	0.997	UTR_3_PRIME Zip88E DOWNSTREAM Cp190
3L	7627578	3L_7627578_SNP [dm3] 3L_7634478_SNP [dm6]	A	C	1.369e^-4	0.997	INTRON CG33275
3R	9348084	3R_9348084_SNP [dm3] 3R_13522362_SNP [dm6]	A	T	1.378e^-4	0.997	DOWNSTREAM CG12538 INTERGENIC
2R	13632229	2R_13632229_SNP [dm3] 2R_17744724_SNP [dm6]	C	T	1.395e^-4	0.997	SYNONYMOUS_CODING Ir54a DOWNSTREAM CG4996 & 1 other	TF binding site mE1_TFBS_sens
2L	16546048	2L_16546048_DEL [dm3] 2L_16546048_DEL [dm6]	AGGTGTACGTA...	A	1.400e^-4	0.997	INTRON CG42389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
X	15171113	X_15171113_SNP [dm3] X_15277080_SNP [dm6]	A	G	1.420e^-4	0.997	INTERGENIC
3R	8548810	3R_8548810_SNP [dm3] 3R_12723088_SNP [dm6]	T	G	1.428e^-4	0.997	UPSTREAM Men INTERGENIC	TF binding site mE1_TFBS_HSA
X	8183037	X_8183037_SNP [dm3] X_8289004_SNP [dm6]	A	C	1.436e^-4	0.997	INTRON nAChRalpha3
2R	16832221	2R_16832221_SNP [dm3] 2R_20944716_SNP [dm6]	T	C	1.456e^-4	0.997	INTRON Act57B	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	25470022	3R_25470022_SNP [dm3] 3R_29644300_SNP [dm6]	G	A	1.469e^-4	0.997	INTRON Dop1R2
3L	10765546	3L_10765546_SNP [dm3] 3L_10772446_SNP [dm6]	C	T	1.479e^-4	0.997	SYNONYMOUS_CODING CG43245	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18006251	3L_18006251_SNP [dm3] 3L_18013151_SNP [dm6]	G	C	1.480e^-4	0.997	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6165115	2L_6165115_SNP [dm3] 2L_6165115_SNP [dm6]	G	A	1.481e^-4	0.997	INTERGENIC
2L	18762055	2L_18762055_SNP [dm3] 2L_18762055_SNP [dm6]	A	C	1.483e^-4	0.997	DOWNSTREAM ham INTERGENIC
2R	17657434	2R_17657434_SNP [dm3] 2R_21769929_SNP [dm6]	A	C	1.574e^-4	0.997	INTRON CG30395	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8044765	3L_8044765_SNP [dm3] 3L_8051665_SNP [dm6]	C	G	1.582e^-4	0.997	UTR_3_PRIME nmo
2L	5112018	2L_5112018_SNP [dm3] 2L_5112018_SNP [dm6]	T	A	1.603e^-4	0.997	INTRON Msp300
2R	9406806	2R_9406806_SNP [dm3] 2R_13519301_SNP [dm6]	T	G	1.646e^-4	0.997	SYNONYMOUS_CODING Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12515013	2L_12515013_SNP [dm3] 2L_12515013_SNP [dm6]	C	T	1.666e^-4	0.997	INTRON bun
2R	15708024	2R_15708024_SNP [dm3] 2R_19820519_SNP [dm6]	C	T	1.694e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Kr
2R	15708042	2R_15708042_SNP [dm3] 2R_19820537_SNP [dm6]	C	G	1.694e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Kr
2R	14322746	2R_14322746_SNP [dm3] 2R_18435241_SNP [dm6]	A	T	1.729e^-4	0.997	INTRON CG30118	TF binding site BDTNP1_TFBS_twi
3L	18291761	3L_18291761_SNP [dm3] 3L_18298661_SNP [dm6]	T	C	1.741e^-4	0.997	DOWNSTREAM CG13700 INTERGENIC
X	10862561	X_10862561_SNP [dm3] X_10968528_SNP [dm6]	C	T	1.797e^-4	0.997	UTR_3_PRIME CG42339
2R	16832205	2R_16832205_SNP [dm3] 2R_20944700_SNP [dm6]	A	G	1.810e^-4	0.997	INTRON Act57B	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
X	13800153	X_13800153_SNP [dm3] X_13906120_SNP [dm6]	T	A	1.854e^-4	0.997	INTRON mamo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13568970	2L_13568970_INS [dm3] 2L_13568970_INS [dm6]	C	CG	1.890e^-4	0.997	INTRON kuz
2L	7523965	2L_7523965_SNP [dm3] 2L_7523965_SNP [dm6]	T	C	1.895e^-4	0.997	INTRON RapGAP1
3R	9712322	3R_9712322_SNP [dm3] 3R_13886600_SNP [dm6]	A	T	1.920e^-4	0.997	INTERGENIC
2R	14364947	2R_14364947_SNP [dm3] 2R_18477442_SNP [dm6]	G	A	1.921e^-4	0.997	INTRON CG30116
2R	5147663	2R_5147663_SNP [dm3] 2R_9260158_SNP [dm6]	T	A	1.938e^-4	0.997	DOWNSTREAM CG34141 INTRON Pkn	TF binding site mE1_TFBS_cad
X	10935834	X_10935834_SNP [dm3] X_11041801_SNP [dm6]	A	G	1.950e^-4	0.997	INTERGENIC
2R	14322703	2R_14322703_SNP [dm3] 2R_18435198_SNP [dm6]	T	A	1.972e^-4	0.997	INTRON CG30118	TF binding site BDTNP1_TFBS_twi
2L	12514599	2L_12514599_SNP [dm3] 2L_12514599_SNP [dm6]	A	G	1.980e^-4	0.997	INTRON bun
2R	18885600	2R_18885600_SNP [dm3] 2R_22998077_SNP [dm6]	C	T	1.981e^-4	0.997	INTRON twi & 1 other
3R	8956615	3R_8956615_SNP [dm3] 3R_13130893_SNP [dm6]	C	T	1.986e^-4	0.997	INTRON timeout & 1 other
2R	9407037	2R_9407037_SNP [dm3] 2R_13519532_SNP [dm6]	C	T	2.122e^-4	0.997	SYNONYMOUS_CODING Vmat	TF binding site mE1_TFBS_cad
3L	7006494	3L_7006494_SNP [dm3] 3L_7013394_SNP [dm6]	C	T	2.129e^-4	0.997	UPSTREAM Mp INTRON Mp	TF binding site mE1_TFBS_bab1
3L	8804934	3L_8804934_SNP [dm3] 3L_8811834_SNP [dm6]	G	A	2.145e^-4	0.997	DOWNSTREAM CG13309 INTERGENIC
2L	7589889	2L_7589889_SNP [dm3] 2L_7589889_SNP [dm6]	T	A	2.155e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	14978389	2R_14978389_SNP [dm3] 2R_19090884_SNP [dm6]	C	A	2.169e^-4	0.997	NON_SYNONYMOUS_CODING 5-HT1A
2R	12281117	2R_12281117_SNP [dm3] 2R_16393612_SNP [dm6]	G	T	2.171e^-4	0.997	INTRON Sema-2b
3R	8364883	3R_8364883_SNP [dm3] 3R_12539161_SNP [dm6]	T	A	2.178e^-4	0.997	INTRON Octbeta3R
3L	8874451	3L_8874451_SNP [dm3] 3L_8881351_SNP [dm6]	C	A	2.179e^-4	0.997	INTRON dally
3L	6233596	3L_6233596_SNP [dm3] 3L_6240496_SNP [dm6]	C	A	2.190e^-4	0.997	UPSTREAM CG10226 DOWNSTREAM Mdr65 INTERGENIC
3L	10643848	3L_10643848_DEL [dm3] 3L_10650748_DEL [dm6]	GG	A	2.207e^-4	0.997	INTRON CG32066
3R	8367135	3R_8367135_SNP [dm3] 3R_12541413_SNP [dm6]	A	T	2.252e^-4	0.997	INTRON Octbeta3R
3L	7006427	3L_7006427_SNP [dm3] 3L_7013327_SNP [dm6]	T	A	2.255e^-4	0.997	UPSTREAM Mp INTRON Mp	TF binding site mE1_TFBS_bab1
2R	6345927	2R_6345927_SNP [dm3] 2R_10458422_SNP [dm6]	T	A	2.271e^-4	0.997	UPSTREAM Galphao & 1 other INTRON Galphao & 1 other
3R	25470055	3R_25470055_SNP [dm3] 3R_29644333_SNP [dm6]	T	A	2.288e^-4	0.997	INTRON Dop1R2
3R	25470069	3R_25470069_SNP [dm3] 3R_29644347_SNP [dm6]	T	A	2.288e^-4	0.997	INTRON Dop1R2
2L	7927915	2L_7927915_SNP [dm3] 2L_7927915_SNP [dm6]	C	T	2.303e^-4	0.997	INTRON Snoo
2L	7927923	2L_7927923_SNP [dm3] 2L_7927923_SNP [dm6]	T	A	2.303e^-4	0.997	INTRON Snoo
2L	7927928	2L_7927928_SNP [dm3] 2L_7927928_SNP [dm6]	T	A	2.303e^-4	0.997	INTRON Snoo
2L	7591191	2L_7591191_DEL [dm3] 2L_7591191_DEL [dm6]	AAA	A	2.315e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	7370153	2R_7370153_SNP [dm3] 2R_11482648_SNP [dm6]	T	G	2.345e^-4	0.997	INTRON inv
3R	18677413	3R_18677413_SNP [dm3] 3R_22851691_SNP [dm6]	C	G	2.364e^-4	0.997	EXON CR43846	TF binding site BDTNP1_TFBS_hb
3R	16694637	3R_16694637_SNP [dm3] 3R_20868915_SNP [dm6]	C	T	2.379e^-4	0.997	INTERGENIC
3L	11354240	3L_11354240_SNP [dm3] 3L_11361140_SNP [dm6]	G	A	2.386e^-4	0.997	DOWNSTREAM CG6163 INTERGENIC
2R	6660923	2R_6660923_SNP [dm3] 2R_10773418_SNP [dm6]	C	T	2.406e^-4	0.997	INTRON CG33144
3R	13805869	3R_13805869_SNP [dm3] 3R_17980147_SNP [dm6]	C	T	2.412e^-4	0.997	INTRON cpo
3L	15541459	3L_15541459_SNP [dm3] 3L_15548359_SNP [dm6]	A	T	2.419e^-4	0.997	INTRON CrebA	TF binding site BDTNP1_TFBS_hb
3R	6452685	3R_6452685_SNP [dm3] 3R_10626963_SNP [dm6]	T	C	2.428e^-4	0.997	INTRON hth	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18885593	2R_18885593_SNP [dm3] 2R_22998070_SNP [dm6]	G	A	2.458e^-4	0.997	INTRON twi & 1 other
3L	18337033	3L_18337033_SNP [dm3] 3L_18343933_SNP [dm6]	C	A	2.463e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17164498	2R_17164498_SNP [dm3] 2R_21276993_SNP [dm6]	C	T	2.473e^-4	0.997	INTRON Rgk3
2R	11575353	2R_11575353_SNP [dm3] 2R_15687848_SNP [dm6]	C	G	2.478e^-4	0.997	NON_SYNONYMOUS_CODING Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10098129	X_10098129_SNP [dm3] X_10204096_SNP [dm6]	T	C	2.484e^-4	0.997	UPSTREAM CR32690 INTRON CR44894
X	1605040	X_1605040_SNP [dm3] X_1711007_SNP [dm6]	C	A	2.522e^-4	0.997	UPSTREAM CG3795 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	27457511	3R_27457511_DEL [dm3] 3R_31631789_DEL [dm6]	TT	C	2.525e^-4	0.997	INTRON kek6
X	6689009	X_6689009_SNP [dm3] X_6794976_SNP [dm6]	C	T	2.545e^-4	0.997	INTRON C3G	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	2380335	2L_2380335_SNP [dm3] 2L_2380335_SNP [dm6]	T	A	2.547e^-4	0.997	UTR_3_PRIME Atxn7 UPSTREAM Eogt DOWNSTREAM Atxn7	TF binding site BDTNP1_TFBS_dl
2R	19656607	2R_19656607_SNP [dm3] 2R_23769084_SNP [dm6]	A	G	2.589e^-4	0.997	SPLICE_SITE_REGION CG9850 INTRON CG9850
2L	6511287	2L_6511287_SNP [dm3] 2L_6511287_SNP [dm6]	A	T	2.622e^-4	0.997	INTRON CG31637
3R	21066624	3R_21066624_SNP [dm3] 3R_25240902_SNP [dm6]	A	G	2.625e^-4	0.997	SYNONYMOUS_CODING to
3R	21066654	3R_21066654_SNP [dm3] 3R_25240932_SNP [dm6]	G	T	2.625e^-4	0.997	SYNONYMOUS_CODING to
3L	6975982	3L_6975982_SNP [dm3] 3L_6982882_SNP [dm6]	C	T	2.709e^-4	0.997	DOWNSTREAM CG32388 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7599150	2L_7599150_SNP [dm3] 2L_7599150_SNP [dm6]	G	A	2.721e^-4	0.997	INTERGENIC
3L	7445263	3L_7445263_SNP [dm3] 3L_7452163_SNP [dm6]	A	G	2.755e^-4	0.997	DOWNSTREAM CG33278 INTRON CG42458
2R	18983704	2R_18983704_SNP [dm3] 2R_23096181_SNP [dm6]	A	C	2.764e^-4	0.997	INTERGENIC
2L	6793970	2L_6793970_SNP [dm3] 2L_6793970_SNP [dm6]	A	C	2.778e^-4	0.997	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12351077	2L_12351077_SNP [dm3] 2L_12351077_SNP [dm6]	G	A	2.780e^-4	0.997	INTRON bru-2
3R	23499946	3R_23499946_SNP [dm3] 3R_27674224_SNP [dm6]	A	T	2.800e^-4	0.997	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo
2R	15854967	2R_15854967_SNP [dm3] 2R_19967462_SNP [dm6]	T	G	2.880e^-4	0.997	INTERGENIC
2R	16691959	2R_16691959_SNP [dm3] 2R_20804454_SNP [dm6]	G	A	2.954e^-4	0.997	INTERGENIC
2L	13106725	2L_13106725_SNP [dm3] 2L_13106725_SNP [dm6]	C	A	2.956e^-4	0.997	UPSTREAM CG5142 INTERGENIC
X	5008278	X_5008278_SNP [dm3] X_5114245_SNP [dm6]	C	A	2.979e^-4	0.997	INTRON rg & 1 other
3L	8745109	3L_8745109_SNP [dm3] 3L_8752009_SNP [dm6]	A	G	2.987e^-4	0.997	UPSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10177142	3R_10177142_SNP [dm3] 3R_14351420_SNP [dm6]	C	T	2.993e^-4	0.997	INTRON NK7.1
2R	6469750	2R_6469750_SNP [dm3] 2R_10582245_SNP [dm6]	A	C	3.001e^-4	0.997	INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	15230572	3L_15230572_SNP [dm3] 3L_15237472_SNP [dm6]	A	C	3.002e^-4	0.997	NON_SYNONYMOUS_CODING Tollo	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12586507	2L_12586507_SNP [dm3] 2L_12586507_SNP [dm6]	G	A	3.032e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17649831	2R_17649831_DEL [dm3] 2R_21762326_DEL [dm6]	TCA	T	3.045e^-4	0.997	DOWNSTREAM CR43983 INTERGENIC
2R	17649841	2R_17649841_SNP [dm3] 2R_21762336_SNP [dm6]	A	T	3.045e^-4	0.997	DOWNSTREAM CR43983 INTERGENIC
3L	18291719	3L_18291719_SNP [dm3] 3L_18298619_SNP [dm6]	A	G	3.110e^-4	0.997	DOWNSTREAM CG13700 INTERGENIC
3R	23580600	3R_23580600_SNP [dm3] 3R_27754878_SNP [dm6]	T	A	3.153e^-4	0.997	INTERGENIC
2R	5211527	2R_5211527_SNP [dm3] 2R_9324022_SNP [dm6]	T	A	3.161e^-4	0.997	INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16824527	3L_16824527_SNP [dm3] 3L_16831427_SNP [dm6]	A	G	3.171e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16531300	2R_16531300_SNP [dm3] 2R_20643795_SNP [dm6]	C	T	3.172e^-4	0.997	UPSTREAM DMAP1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2R	5908229	2R_5908229_SNP [dm3] 2R_10020724_SNP [dm6]	A	C	3.173e^-4	0.997	INTRON Pka-R2
2L	2380297	2L_2380297_SNP [dm3] 2L_2380297_SNP [dm6]	T	A	3.226e^-4	0.997	UTR_3_PRIME Atxn7 UPSTREAM Eogt DOWNSTREAM Atxn7	TF binding site BDTNP1_TFBS_dl
3R	9316113	3R_9316113_SNP [dm3] 3R_13490391_SNP [dm6]	G	A	3.238e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7800722	2L_7800722_SNP [dm3] 2L_7800722_SNP [dm6]	G	A	3.248e^-4	0.997	SPLICE_SITE_REGION r2d2 SYNONYMOUS_CODING r2d2 UPSTREAM Herp DOWNSTREAM cdc14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1074877	3L_1074877_SNP [dm3] 3L_1074877_SNP [dm6]	G	A	3.268e^-4	0.997	INTRON bab1
2R	8865383	2R_8865383_SNP [dm3] 2R_12977878_SNP [dm6]	C	T	3.271e^-4	0.997	NON_SYNONYMOUS_CODING Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	289874	2L_289874_SNP [dm3] 2L_289874_SNP [dm6]	G	T	3.283e^-4	0.997	UPSTREAM Amnionless INTRON CG3625
3L	11130437	3L_11130437_SNP [dm3] 3L_11137337_SNP [dm6]	A	G	3.295e^-4	0.997	INTRON CG32082
2L	5836791	2L_5836791_SNP [dm3] 2L_5836791_SNP [dm6]	C	T	3.341e^-4	0.997	INTRON TrissinR
3L	9558278	3L_9558278_SNP [dm3] 3L_9565178_SNP [dm6]	T	C	3.354e^-4	0.997	INTRON CG42673
3R	8939969	3R_8939969_SNP [dm3] 3R_13114247_SNP [dm6]	A	G	3.362e^-4	0.997	SPLICE_SITE_REGION timeout INTRON timeout
3R	25138869	3R_25138869_SNP [dm3] 3R_29313147_SNP [dm6]	A	G	3.377e^-4	0.997	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	11895826	3L_11895826_SNP [dm3] 3L_11902726_SNP [dm6]	G	C	3.399e^-4	0.997	INTRON CG44837
3R	24139884	3R_24139884_SNP [dm3] 3R_28314162_SNP [dm6]	C	A	3.416e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	12869206	2R_12869206_DEL [dm3] 2R_16981701_DEL [dm6]	TT	T	3.519e^-4	0.997	INTRON Cbp53E
2L	312064	2L_312064_SNP [dm3] 2L_312064_SNP [dm6]	A	C	3.541e^-4	0.997	INTRON Plc21C
3L	20565475	3L_20565475_SNP [dm3] 3L_20572375_SNP [dm6]	A	T	3.542e^-4	0.997	INTERGENIC
2L	2381042	2L_2381042_SNP [dm3] 2L_2381042_SNP [dm6]	G	A	3.562e^-4	0.997	UPSTREAM Eogt DOWNSTREAM Atxn7 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7376960	2L_7376960_SNP [dm3] 2L_7376960_SNP [dm6]	T	A	3.563e^-4	0.997	UPSTREAM ninaC INTRON Wnt10
3L	20565303	3L_20565303_SNP [dm3] 3L_20572203_SNP [dm6]	A	G	3.571e^-4	0.997	INTERGENIC
3L	20565474	3L_20565474_SNP [dm3] 3L_20572374_SNP [dm6]	A	T	3.571e^-4	0.997	INTERGENIC
2R	4496925	2R_4496925_SNP [dm3] 2R_8609420_SNP [dm6]	A	G	3.576e^-4	0.997	INTRON rgr	TF binding site mE1_TFBS_cad
3R	18886082	3R_18886082_SNP [dm3] 3R_23060360_SNP [dm6]	G	A	3.642e^-4	0.997	INTRON sav	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11208850	2L_11208850_SNP [dm3] 2L_11208850_SNP [dm6]	C	T	3.664e^-4	0.997	INTERGENIC
3R	22465119	3R_22465119_SNP [dm3] 3R_26639397_SNP [dm6]	T	C	3.669e^-4	0.997	UPSTREAM TwdlD INTERGENIC
2L	8358149	2L_8358149_SNP [dm3] 2L_8358149_SNP [dm6]	T	C	3.683e^-4	0.997	SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_twi
3L	9398341	3L_9398341_SNP [dm3] 3L_9405241_SNP [dm6]	G	T	3.697e^-4	0.997	DOWNSTREAM CG4022 INTRON Cpr67B
3L	14466809	3L_14466809_SNP [dm3] 3L_14473709_SNP [dm6]	A	T	3.707e^-4	0.997	INTRON bbg
2L	13492526	2L_13492526_SNP [dm3] 2L_13492526_SNP [dm6]	G	T	3.721e^-4	0.997	INTRON CG42784
3L	18291763	3L_18291763_SNP [dm3] 3L_18298663_SNP [dm6]	A	T	3.800e^-4	0.997	DOWNSTREAM CG13700 INTERGENIC
3R	25386008	3R_25386008_SNP [dm3] 3R_29560286_SNP [dm6]	G	A	3.802e^-4	0.997	INTRON Dr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	7589918	2L_7589918_SNP [dm3] 2L_7589918_SNP [dm6]	C	T	3.808e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	25470024	3R_25470024_SNP [dm3] 3R_29644302_SNP [dm6]	C	A	3.835e^-4	0.997	INTRON Dop1R2
3R	25470073	3R_25470073_SNP [dm3] 3R_29644351_SNP [dm6]	G	T	3.835e^-4	0.997	INTRON Dop1R2
3R	22759226	3R_22759226_SNP [dm3] 3R_26933504_SNP [dm6]	G	C	3.851e^-4	0.997	INTRON sda
2L	10871059	2L_10871059_SNP [dm3] 2L_10871059_SNP [dm6]	A	G	3.859e^-4	0.997	UPSTREAM CR45454 DOWNSTREAM CG12517 EXON CR45453
3R	9326954	3R_9326954_SNP [dm3] 3R_13501232_SNP [dm6]	C	T	3.867e^-4	0.997	INTERGENIC
3L	11313293	3L_11313293_SNP [dm3] 3L_11320193_SNP [dm6]	A	G	3.897e^-4	0.997	UTR_3_PRIME CG6168 DOWNSTREAM CG6168
X	19396972	X_19396972_SNP [dm3] X_19502939_SNP [dm6]	A	G	3.944e^-4	0.997	INTRON Pfrx & 1 other	transposable element FlyBase
3R	18781805	3R_18781805_SNP [dm3] 3R_22956083_SNP [dm6]	A	T	3.958e^-4	0.997	INTRON klg
2R	18422560	2R_18422560_SNP [dm3] 2R_22535055_SNP [dm6]	T	C	3.978e^-4	0.997	SYNONYMOUS_CODING px
3L	10876928	3L_10876928_SNP [dm3] 3L_10883828_SNP [dm6]	C	T	4.023e^-4	0.997	DOWNSTREAM CG6404 & 1 other INTERGENIC
3R	18781782	3R_18781782_SNP [dm3] 3R_22956060_SNP [dm6]	G	A	4.029e^-4	0.997	INTRON klg
3R	18781800	3R_18781800_SNP [dm3] 3R_22956078_SNP [dm6]	T	C	4.029e^-4	0.997	INTRON klg
3R	18781801	3R_18781801_SNP [dm3] 3R_22956079_SNP [dm6]	G	A	4.029e^-4	0.997	INTRON klg
2L	18760557	2L_18760557_SNP [dm3] 2L_18760557_SNP [dm6]	A	T	4.054e^-4	0.997	INTERGENIC
2R	5085793	2R_5085793_SNP [dm3] 2R_9198288_SNP [dm6]	T	C	4.057e^-4	0.997	INTRON unpg	transposable element FlyBase
3R	27529084	3R_27529084_SNP [dm3] 3R_31703362_SNP [dm6]	A	G	4.084e^-4	0.997	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	7837831	2R_7837831_DEL [dm3] 2R_11950326_DEL [dm6]	AA	A	4.089e^-4	0.997	INTRON CG13188
2L	2248306	2L_2248306_SNP [dm3] 2L_2248306_SNP [dm6]	T	C	4.097e^-4	0.997	DOWNSTREAM CR42859 INTERGENIC
2R	17649895	2R_17649895_DEL [dm3] 2R_21762390_DEL [dm6]	TGTATGTAT	T	4.107e^-4	0.997	DOWNSTREAM CR43983 INTERGENIC
2L	9187515	2L_9187515_SNP [dm3] 2L_9187515_SNP [dm6]	A	G	4.126e^-4	0.997	INTRON tai	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19905596	3R_19905596_SNP [dm3] 3R_24079874_SNP [dm6]	T	A	4.160e^-4	0.997	INTRON 4EHP
3L	16786532	3L_16786532_SNP [dm3] 3L_16793432_SNP [dm6]	T	C	4.169e^-4	0.997	SYNONYMOUS_CODING CG9674	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15681900	3L_15681900_SNP [dm3] 3L_15688800_SNP [dm6]	G	A	4.214e^-4	0.997	STOP_GAINED CG34451 UPSTREAM CG34452	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2381031	2L_2381031_SNP [dm3] 2L_2381031_SNP [dm6]	A	C	4.229e^-4	0.997	UPSTREAM Eogt DOWNSTREAM Atxn7 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2381037	2L_2381037_SNP [dm3] 2L_2381037_SNP [dm6]	T	A	4.229e^-4	0.997	UPSTREAM Eogt DOWNSTREAM Atxn7 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17428458	2L_17428458_SNP [dm3] 2L_17428458_SNP [dm6]	T	A	4.254e^-4	0.997	UPSTREAM Dif INTRON Dif
2L	17428471	2L_17428471_SNP [dm3] 2L_17428471_SNP [dm6]	G	A	4.254e^-4	0.997	UPSTREAM Dif INTRON Dif
2R	17658426	2R_17658426_SNP [dm3] 2R_21770921_SNP [dm6]	G	C	4.283e^-4	0.997	DOWNSTREAM CG30395 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21397645	3R_21397645_SNP [dm3] 3R_25571923_SNP [dm6]	G	A	4.286e^-4	0.997	INTRON msi
3R	19551737	3R_19551737_SNP [dm3] 3R_23726015_SNP [dm6]	G	T	4.292e^-4	0.997	INTRON CG10365
2R	15238937	2R_15238937_SNP [dm3] 2R_19351432_SNP [dm6]	C	T	4.344e^-4	0.997	INTRON Rgk1
2R	17658454	2R_17658454_SNP [dm3] 2R_21770949_SNP [dm6]	C	A	4.365e^-4	0.997	DOWNSTREAM CG30395 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17658429	2R_17658429_SNP [dm3] 2R_21770924_SNP [dm6]	G	A	4.403e^-4	0.997	DOWNSTREAM CG30395 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14314417	2R_14314417_SNP [dm3] 2R_18426912_SNP [dm6]	C	A	4.405e^-4	0.997	DOWNSTREAM CG5174 INTRON CG12263	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9335127	2R_9335127_SNP [dm3] 2R_13447622_SNP [dm6]	C	G	4.410e^-4	0.997	INTRON cnn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10811576	2L_10811576_SNP [dm3] 2L_10811576_SNP [dm6]	G	C	4.416e^-4	0.997	INTRON Nos
3R	18159905	3R_18159905_SNP [dm3] 3R_22334183_SNP [dm6]	T	C	4.438e^-4	0.997	UPSTREAM CG5391 DOWNSTREAM CG5388 INTERGENIC
2L	6786222	2L_6786222_SNP [dm3] 2L_6786222_SNP [dm6]	T	A	4.457e^-4	0.997	INTRON nrv1	TF binding site mE1_TFBS_Trl
3R	8605314	3R_8605314_SNP [dm3] 3R_12779592_SNP [dm6]	C	A	4.475e^-4	0.997	INTRON beat-Vc
2R	6399040	2R_6399040_SNP [dm3] 2R_10511535_SNP [dm6]	G	T	4.490e^-4	0.997	INTRON lola
3L	13417610	3L_13417610_SNP [dm3] 3L_13424510_SNP [dm6]	G	T	4.520e^-4	0.997	UPSTREAM CG33263 DOWNSTREAM CG14106 INTERGENIC
2R	14364594	2R_14364594_DEL [dm3] 2R_18477089_DEL [dm6]	CGCAA	C	4.536e^-4	0.997	INTRON CG30116	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	19177077	3L_19177077_SNP [dm3] 3L_19183977_SNP [dm6]	C	G	4.540e^-4	0.997	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	21030694	3R_21030694_DEL [dm3] 3R_25204972_DEL [dm6]	ATTGTA	A	4.545e^-4	0.997	INTRON CG13654 & 1 other
2R	6122637	2R_6122637_SNP [dm3] 2R_10235132_SNP [dm6]	G	T	4.555e^-4	0.997	UPSTREAM CG12912 & 1 other INTRON Hr46
3L	7638143	3L_7638143_SNP [dm3] 3L_7645043_SNP [dm6]	G	A	4.557e^-4	0.997	INTERGENIC
3L	16440149	3L_16440149_INS [dm3] 3L_16447049_INS [dm6]	A	AA	4.595e^-4	0.997	INTRON CG33158 & 1 other
2L	2248450	2L_2248450_SNP [dm3] 2L_2248450_SNP [dm6]	C	G	4.625e^-4	0.997	INTERGENIC
2R	14326318	2R_14326318_SNP [dm3] 2R_18438813_SNP [dm6]	T	A	4.641e^-4	0.997	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	11722955	2R_11722955_SNP [dm3] 2R_15835450_SNP [dm6]	G	A	4.676e^-4	0.997	UPSTREAM Poxn INTRON tun	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	1917319	3L_1917319_SNP [dm3] 3L_1917319_SNP [dm6]	G	T	4.714e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	13977705	3L_13977705_SNP [dm3] 3L_13984605_SNP [dm6]	C	T	4.732e^-4	0.997	INTRON CG17364
2R	2958373	2R_2958373_SNP [dm3] 2R_7070868_SNP [dm6]	G	A	4.747e^-4	0.997	UTR_3_PRIME CG12831 UPSTREAM tRNA:CR30298 & 1 other DOWNSTREAM CG12836
2L	5837108	2L_5837108_SNP [dm3] 2L_5837108_SNP [dm6]	T	A	4.756e^-4	0.997	INTRON TrissinR
3R	18886050	3R_18886050_SNP [dm3] 3R_23060328_SNP [dm6]	C	A	4.762e^-4	0.997	INTRON sav	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18886033	3R_18886033_SNP [dm3] 3R_23060311_SNP [dm6]	C	T	4.784e^-4	0.997	INTRON sav	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3847491	2L_3847491_SNP [dm3] 2L_3847491_SNP [dm6]	A	G	4.799e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_inv
2R	18855574	2R_18855574_INS [dm3] 2R_22968051_INS [dm6]	A	AC	4.806e^-4	0.997	INTERGENIC
2R	17657261	2R_17657261_SNP [dm3] 2R_21769756_SNP [dm6]	T	A	4.806e^-4	0.997	INTRON CG30395	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8366068	3R_8366068_SNP [dm3] 3R_12540346_SNP [dm6]	T	A	4.813e^-4	0.997	INTRON Octbeta3R
3L	11895846	3L_11895846_SNP [dm3] 3L_11902746_SNP [dm6]	A	C	4.819e^-4	0.997	INTRON CG44837
2L	12351093	2L_12351093_SNP [dm3] 2L_12351093_SNP [dm6]	A	G	4.821e^-4	0.997	INTRON bru-2
2L	318859	2L_318859_SNP [dm3] 2L_318859_SNP [dm6]	T	C	4.836e^-4	0.997	SYNONYMOUS_CODING CG11912 INTRON Plc21C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7119263	2L_7119263_SNP [dm3] 2L_7119263_SNP [dm6]	C	A	4.854e^-4	0.997	INTRON Pvf3
3L	10642759	3L_10642759_SNP [dm3] 3L_10649659_SNP [dm6]	G	A	4.869e^-4	0.997	INTRON CG32066	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18291777	3L_18291777_SNP [dm3] 3L_18298677_SNP [dm6]	T	A	4.889e^-4	0.997	DOWNSTREAM CG13700 INTERGENIC
3R	12975919	3R_12975919_DEL [dm3] 3R_17150197_DEL [dm6]	CGAATCC	C	4.917e^-4	0.997	UPSTREAM m-cup & 1 other INTRON Det	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13162332	3L_13162332_SNP [dm3] 3L_13169232_SNP [dm6]	G	A	4.920e^-4	0.997	INTERGENIC
3L	7717517	3L_7717517_SNP [dm3] 3L_7724417_SNP [dm6]	G	A	4.949e^-4	0.997	SYNONYMOUS_CODING CG7457 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3620537	2L_3620537_SNP [dm3] 2L_3620537_SNP [dm6]	C	A	4.976e^-4	0.997	SYNONYMOUS_CODING Dot DOWNSTREAM CG15418
2R	18889815	2R_18889815_SNP [dm3] 2R_23002292_SNP [dm6]	A	G	4.996e^-4	0.997	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	25387424	3R_25387424_SNP [dm3] 3R_29561702_SNP [dm6]	G	C	5.021e^-4	0.997	INTRON Dr	TF binding site mE1_TFBS_chinmo
3L	10643902	3L_10643902_SNP [dm3] 3L_10650802_SNP [dm6]	G	A	5.064e^-4	0.997	INTRON CG32066
2L	8358461	2L_8358461_SNP [dm3] 2L_8358461_SNP [dm6]	C	G	5.088e^-4	0.997	SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_twi
3R	12975816	3R_12975816_SNP [dm3] 3R_17150094_SNP [dm6]	G	C	5.092e^-4	0.997	NON_SYNONYMOUS_CODING Det UPSTREAM m-cup & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	12515168	2L_12515168_SNP [dm3] 2L_12515168_SNP [dm6]	A	C	5.101e^-4	0.997	INTRON bun
3L	18291720	3L_18291720_SNP [dm3] 3L_18298620_SNP [dm6]	C	T	5.156e^-4	0.997	DOWNSTREAM CG13700 INTERGENIC
2R	14823023	2R_14823023_SNP [dm3] 2R_18935518_SNP [dm6]	G	A	5.171e^-4	0.997	INTRON sano
2L	4176727	2L_4176727_SNP [dm3] 2L_4176727_SNP [dm6]	C	A	5.172e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_inv
3R	22486468	3R_22486468_SNP [dm3] 3R_26660746_SNP [dm6]	C	G	5.185e^-4	0.997	INTRON beat-VII
3L	19198994	3L_19198994_SNP [dm3] 3L_19205894_SNP [dm6]	A	C	5.198e^-4	0.997	INTRON fz2
3R	12324719	3R_12324719_SNP [dm3] 3R_16498997_SNP [dm6]	T	A	5.206e^-4	0.997	UPSTREAM Gr89a DOWNSTREAM decay INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12324725	3R_12324725_SNP [dm3] 3R_16499003_SNP [dm6]	C	T	5.206e^-4	0.997	UPSTREAM Gr89a DOWNSTREAM decay INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12324730	3R_12324730_SNP [dm3] 3R_16499008_SNP [dm6]	G	T	5.206e^-4	0.997	UPSTREAM Gr89a DOWNSTREAM decay INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18291728	3L_18291728_SNP [dm3] 3L_18298628_SNP [dm6]	G	A	5.226e^-4	0.997	DOWNSTREAM CG13700 INTERGENIC
X	8400848	X_8400848_SNP [dm3] X_8506815_SNP [dm6]	G	A	5.248e^-4	0.997	INTRON CG33181	TF binding site mE1_TFBS_inv
3L	1270171	3L_1270171_SNP [dm3] 3L_1270171_SNP [dm6]	T	A	5.256e^-4	0.997	INTRON CG9134
2R	6968892	2R_6968892_SNP [dm3] 2R_11081387_SNP [dm6]	T	A	5.277e^-4	0.997	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16933166	3L_16933166_SNP [dm3] 3L_16940066_SNP [dm6]	C	A	5.289e^-4	0.997	SYNONYMOUS_CODING Cpr73D	TF binding site mE1_TFBS_chinmo
2L	8311796	2L_8311796_SNP [dm3] 2L_8311796_SNP [dm6]	T	C	5.314e^-4	0.997	SYNONYMOUS_CODING CG7806 UPSTREAM CG7810	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	24185127	3R_24185127_SNP [dm3] 3R_28359405_SNP [dm6]	A	G	5.330e^-4	0.997	INTERGENIC
2R	17654237	2R_17654237_SNP [dm3] 2R_21766732_SNP [dm6]	G	A	5.342e^-4	0.997	NON_SYNONYMOUS_CODING CG30395 INTRON CG30395
3R	11970123	3R_11970123_SNP [dm3] 3R_16144401_SNP [dm6]	G	T	5.356e^-4	0.997	DOWNSTREAM CG5903 INTRON Sb
2R	12243988	2R_12243988_SNP [dm3] 2R_16356483_SNP [dm6]	A	G	5.361e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15572313	2R_15572313_SNP [dm3] 2R_19684808_SNP [dm6]	G	T	5.363e^-4	0.997	UPSTREAM CR44505 DOWNSTREAM CG15128 INTERGENIC
2R	17016156	2R_17016156_SNP [dm3] 2R_21128651_SNP [dm6]	T	C	5.387e^-4	0.997	UTR_5_PRIME mago UPSTREAM CG4050 DOWNSTREAM Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17016187	2R_17016187_SNP [dm3] 2R_21128682_SNP [dm6]	C	A	5.387e^-4	0.997	UTR_5_PRIME mago UPSTREAM CG4050 DOWNSTREAM Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11360920	2R_11360920_SNP [dm3] 2R_15473415_SNP [dm6]	G	T	5.402e^-4	0.997	SYNONYMOUS_CODING CG8180	TF binding site mE1_TFBS_chinmo
2R	11362337	2R_11362337_SNP [dm3] 2R_15474832_SNP [dm6]	C	A	5.402e^-4	0.997	INTRON CG8180
3L	6976870	3L_6976870_SNP [dm3] 3L_6983770_SNP [dm6]	A	G	5.420e^-4	0.997	UTR_3_PRIME CG32388 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14686238	2L_14686238_SNP [dm3] 2L_14686238_SNP [dm6]	A	T	5.463e^-4	0.997	INTRON osp
2R	13795794	2R_13795794_SNP [dm3] 2R_17908289_SNP [dm6]	A	T	5.475e^-4	0.997	INTRON Elk
3R	13805891	3R_13805891_SNP [dm3] 3R_17980169_SNP [dm6]	C	G	5.495e^-4	0.997	INTRON cpo
3R	25087923	3R_25087923_SNP [dm3] 3R_29262201_SNP [dm6]	G	C	5.512e^-4	0.997	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12864015	2L_12864015_SNP [dm3] 2L_12864015_SNP [dm6]	C	T	5.534e^-4	0.997	INTERGENIC
3L	6174223	3L_6174223_SNP [dm3] 3L_6181123_SNP [dm6]	T	C	5.540e^-4	0.997	SYNONYMOUS_CODING CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13898203	3L_13898203_SNP [dm3] 3L_13905103_SNP [dm6]	A	C	5.544e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3437286	2L_3437286_SNP [dm3] 2L_3437286_SNP [dm6]	G	A	5.565e^-4	0.997	INTERGENIC
2L	3437290	2L_3437290_SNP [dm3] 2L_3437290_SNP [dm6]	C	A	5.565e^-4	0.997	INTERGENIC
2L	7589815	2L_7589815_SNP [dm3] 2L_7589815_SNP [dm6]	A	T	5.593e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_Kr
X	17912013	X_17912013_SNP [dm3] X_18017980_SNP [dm6]	T	C	5.614e^-4	0.997	INTRON Sh
X	17912040	X_17912040_INS [dm3] X_18018007_INS [dm6]	T	TGCTGTGAACATAAT...	5.614e^-4	0.997	INTRON Sh
X	11522369	X_11522369_SNP [dm3] X_11628336_SNP [dm6]	G	A	5.629e^-4	0.997	INTRON Ptp10D
X	11522397	X_11522397_SNP [dm3] X_11628364_SNP [dm6]	A	C	5.629e^-4	0.997	INTRON Ptp10D
2L	4179488	2L_4179488_SNP [dm3] 2L_4179488_SNP [dm6]	A	T	5.638e^-4	0.997	INTERGENIC
2L	4179489	2L_4179489_SNP [dm3] 2L_4179489_SNP [dm6]	T	A	5.638e^-4	0.997	INTERGENIC
2L	11526914	2L_11526914_SNP [dm3] 2L_11526914_SNP [dm6]	T	A	5.645e^-4	0.997	INTRON CG31705
2L	11526965	2L_11526965_SNP [dm3] 2L_11526965_SNP [dm6]	G	T	5.645e^-4	0.997	INTRON CG31705
2L	11526979	2L_11526979_SNP [dm3] 2L_11526979_SNP [dm6]	G	A	5.645e^-4	0.997	INTRON CG31705
2R	2068609	2R_2068609_SNP [dm3] 2R_6181104_SNP [dm6]	G	A	5.650e^-4	0.997	SYNONYMOUS_CODING CG11211 DOWNSTREAM CG8343 & 1 other	regulatory region REDfly_CRMs
3L	13435134	3L_13435134_SNP [dm3] 3L_13442034_SNP [dm6]	A	G	5.662e^-4	0.997	SYNONYMOUS_CODING CG14109 UPSTREAM CG10732	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	13435260	3L_13435260_SNP [dm3] 3L_13442160_SNP [dm6]	T	C	5.662e^-4	0.997	SYNONYMOUS_CODING CG14109 UPSTREAM CG10732	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	13435263	3L_13435263_SNP [dm3] 3L_13442163_SNP [dm6]	C	T	5.662e^-4	0.997	SYNONYMOUS_CODING CG14109 UPSTREAM CG10732	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	13435287	3L_13435287_SNP [dm3] 3L_13442187_SNP [dm6]	T	C	5.662e^-4	0.997	SYNONYMOUS_CODING CG14109 UPSTREAM CG10732	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	13435296	3L_13435296_SNP [dm3] 3L_13442196_SNP [dm6]	C	T	5.662e^-4	0.997	SYNONYMOUS_CODING CG14109 UPSTREAM CG10732	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	13435427	3L_13435427_SNP [dm3] 3L_13442327_SNP [dm6]	A	C	5.662e^-4	0.997	UTR_3_PRIME CG14109 UPSTREAM CG10732	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	13435429	3L_13435429_SNP [dm3] 3L_13442329_SNP [dm6]	A	C	5.662e^-4	0.997	UTR_3_PRIME CG14109 UPSTREAM CG10732	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	13435450	3L_13435450_SNP [dm3] 3L_13442350_SNP [dm6]	T	G	5.662e^-4	0.997	UTR_3_PRIME CG14109 UPSTREAM CG10732	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	13435476	3L_13435476_SNP [dm3] 3L_13442376_SNP [dm6]	G	A	5.662e^-4	0.997	UTR_3_PRIME CG14109 UPSTREAM CG10732	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	19693437	2R_19693437_SNP [dm3] 2R_23805914_SNP [dm6]	T	G	5.707e^-4	0.997	UTR_3_PRIME CG5539 DOWNSTREAM Ssrp & 1 other INTRON CG13561
3L	13458467	3L_13458467_SNP [dm3] 3L_13465367_SNP [dm6]	G	A	5.748e^-4	0.997	UTR_3_PRIME CG10738 DOWNSTREAM CG10089
3L	13458486	3L_13458486_SNP [dm3] 3L_13465386_SNP [dm6]	A	T	5.748e^-4	0.997	UTR_3_PRIME CG10738 DOWNSTREAM CG10089
3R	7735703	3R_7735703_SNP [dm3] 3R_11909981_SNP [dm6]	A	G	5.783e^-4	0.997	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12424401	2L_12424401_DEL [dm3] 2L_12424401_DEL [dm6]	TGACTTGTTTTTAAATAAAC...	T	5.806e^-4	0.997	UPSTREAM vir-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
3R	9333525	3R_9333525_SNP [dm3] 3R_13507803_SNP [dm6]	G	A	5.817e^-4	0.997	INTERGENIC
2L	5966335	2L_5966335_SNP [dm3] 2L_5966335_SNP [dm6]	A	G	5.836e^-4	0.997	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	19310334	3R_19310334_SNP [dm3] 3R_23484612_SNP [dm6]	A	C	5.844e^-4	0.997	SYNONYMOUS_CODING Ir94g UPSTREAM CR44324	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7594540	2L_7594540_SNP [dm3] 2L_7594540_SNP [dm6]	T	G	5.848e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12351075	2L_12351075_SNP [dm3] 2L_12351075_SNP [dm6]	A	C	5.858e^-4	0.997	INTRON bru-2
2L	12351086	2L_12351086_SNP [dm3] 2L_12351086_SNP [dm6]	C	T	5.858e^-4	0.997	INTRON bru-2
2R	17655793	2R_17655793_SNP [dm3] 2R_21768288_SNP [dm6]	G	A	5.921e^-4	0.997	NON_SYNONYMOUS_CODING CG30395
3L	13443514	3L_13443514_SNP [dm3] 3L_13450414_SNP [dm6]	T	C	5.987e^-4	0.997	UPSTREAM CG10738 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	12459938	2R_12459938_SNP [dm3] 2R_16572433_SNP [dm6]	T	A	5.996e^-4	0.997	INTRON CG4927	TF binding site mE1_TFBS_bab1
2R	17430442	2R_17430442_SNP [dm3] 2R_21542937_SNP [dm6]	G	T	6.025e^-4	0.997	INTRON Egfr
3R	15024079	3R_15024079_SNP [dm3] 3R_19198357_SNP [dm6]	T	C	6.046e^-4	0.997	INTRON CG31475
3L	9178970	3L_9178970_SNP [dm3] 3L_9185870_SNP [dm6]	T	C	6.069e^-4	0.997	INTERGENIC
3L	7717544	3L_7717544_SNP [dm3] 3L_7724444_SNP [dm6]	G	A	6.075e^-4	0.997	SYNONYMOUS_CODING CG7457 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14072933	3L_14072933_SNP [dm3] 3L_14079833_SNP [dm6]	T	C	6.107e^-4	0.997	SYNONYMOUS_CODING btl
2L	8301593	2L_8301593_SNP [dm3] 2L_8301593_SNP [dm6]	C	G	6.119e^-4	0.997	NON_SYNONYMOUS_CODING wol UPSTREAM Btk29A	TF binding site BDTNP1_TFBS_dl
3R	20706724	3R_20706724_SNP [dm3] 3R_24881002_SNP [dm6]	C	G	6.131e^-4	0.997	SYNONYMOUS_CODING CG11089 DOWNSTREAM CG31121	TF binding site mE1_TFBS_cad
2L	9773855	2L_9773855_SNP [dm3] 2L_9773855_SNP [dm6]	A	G	6.133e^-4	0.997	SPLICE_SITE_REGION ppk11 UPSTREAM ppk16 INTRON ppk11
X	14737147	X_14737147_SNP [dm3] X_14843114_SNP [dm6]	T	C	6.140e^-4	0.997	SYNONYMOUS_CODING CG12539 INTRON Flo2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	9185619	X_9185619_SNP [dm3] X_9291586_SNP [dm6]	G	A	6.194e^-4	0.997	INTRON lz	TF binding site mE1_TFBS_sens
3R	18781802	3R_18781802_INS [dm3] 3R_22956080_INS [dm6]	A	AGTTACTCAAGTT...	6.257e^-4	0.997	INTRON klg
X	15588417	X_15588417_SNP [dm3] X_15694384_SNP [dm6]	A	G	6.277e^-4	0.997	UPSTREAM CR45524 DOWNSTREAM CR45526 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9229626	3L_9229626_SNP [dm3] 3L_9236526_SNP [dm6]	A	G	6.277e^-4	0.997	SYNONYMOUS_CODING CG4483
2L	6087192	2L_6087192_SNP [dm3] 2L_6087192_SNP [dm6]	A	G	6.308e^-4	0.997	INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl
3L	10644691	3L_10644691_SNP [dm3] 3L_10651591_SNP [dm6]	A	G	6.348e^-4	0.997	INTRON CG32066
2R	16775857	2R_16775857_SNP [dm3] 2R_20888352_SNP [dm6]	A	C	6.364e^-4	0.997	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	9251776	2R_9251776_SNP [dm3] 2R_13364271_SNP [dm6]	G	T	6.405e^-4	0.997	INTERGENIC
3R	11094517	3R_11094517_SNP [dm3] 3R_15268795_SNP [dm6]	G	A	6.426e^-4	0.997	SYNONYMOUS_CODING Zip88E UPSTREAM CG14864	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3R	13838844	3R_13838844_SNP [dm3] 3R_18013122_SNP [dm6]	C	G	6.432e^-4	0.997	INTRON cpo	TF binding site mE1_TFBS_cad
3R	8366231	3R_8366231_INS [dm3] 3R_12540509_INS [dm6]	A	AGTTCTTTA	6.437e^-4	0.997	INTRON Octbeta3R
2L	7524130	2L_7524130_SNP [dm3] 2L_7524130_SNP [dm6]	T	C	6.444e^-4	0.997	INTRON RapGAP1
3L	17652858	3L_17652858_DEL [dm3] 3L_17659758_DEL [dm6]	AA	A	6.451e^-4	0.997	DOWNSTREAM Crtc INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9392540	2R_9392540_SNP [dm3] 2R_13505035_SNP [dm6]	G	A	6.470e^-4	0.997	NON_SYNONYMOUS_CODING mars	TF binding site mE1_TFBS_chinmo
2R	13855503	2R_13855503_SNP [dm3] 2R_17967998_SNP [dm6]	G	C	6.477e^-4	0.997	INTERGENIC
3L	3531780	3L_3531780_SNP [dm3] 3L_3531780_SNP [dm6]	A	G	6.482e^-4	0.997	INTRON Eip63E
3R	11094609	3R_11094609_SNP [dm3] 3R_15268887_SNP [dm6]	T	C	6.498e^-4	0.997	NON_SYNONYMOUS_CODING Zip88E UPSTREAM CG14864	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	18984341	3R_18984341_SNP [dm3] 3R_23158619_SNP [dm6]	T	A	6.500e^-4	0.997	SYNONYMOUS_CODING VhaAC39-2 UPSTREAM unk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	6968760	2R_6968760_SNP [dm3] 2R_11081255_SNP [dm6]	A	G	6.506e^-4	0.997	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10177143	3R_10177143_SNP [dm3] 3R_14351421_SNP [dm6]	T	A	6.507e^-4	0.997	INTRON NK7.1
X	4716631	X_4716631_INS [dm3] X_4822598_INS [dm6]	T	TA	6.539e^-4	0.997	INTERGENIC
2L	7589824	2L_7589824_SNP [dm3] 2L_7589824_SNP [dm6]	A	C	6.561e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	7589838	2L_7589838_SNP [dm3] 2L_7589838_SNP [dm6]	T	C	6.561e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	7589839	2L_7589839_SNP [dm3] 2L_7589839_SNP [dm6]	G	A	6.561e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	7589852	2L_7589852_SNP [dm3] 2L_7589852_SNP [dm6]	G	A	6.561e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	7589864	2L_7589864_SNP [dm3] 2L_7589864_SNP [dm6]	T	A	6.561e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	7589866	2L_7589866_SNP [dm3] 2L_7589866_SNP [dm6]	A	T	6.561e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_Kr
X	21329313	X_21329313_SNP [dm3] X_21458286_SNP [dm6]	T	A	6.562e^-4	0.997	UPSTREAM CG42343 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	17392439	2R_17392439_SNP [dm3] 2R_21504934_SNP [dm6]	T	C	6.572e^-4	0.997	INTRON MESK2
2R	8530621	2R_8530621_SNP [dm3] 2R_12643116_SNP [dm6]	G	C	6.572e^-4	0.997	INTRON CG8785
3L	16744846	3L_16744846_SNP [dm3] 3L_16751746_SNP [dm6]	A	C	6.581e^-4	0.997	INTERGENIC
2L	7927935	2L_7927935_SNP [dm3] 2L_7927935_SNP [dm6]	T	G	6.585e^-4	0.997	INTRON Snoo
3L	6818004	3L_6818004_SNP [dm3] 3L_6824904_SNP [dm6]	T	A	6.601e^-4	0.997	INTERGENIC	regulatory region REDfly_CRMs
3L	11518974	3L_11518974_SNP [dm3] 3L_11525874_SNP [dm6]	G	A	6.606e^-4	0.997	INTRON Mob2
3R	18450564	3R_18450564_DEL [dm3] 3R_22624842_DEL [dm6]	CTC	C	6.607e^-4	0.997	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	14323787	2R_14323787_SNP [dm3] 2R_18436282_SNP [dm6]	T	A	6.618e^-4	0.997	INTRON CG30118	TF binding site BDTNP1_TFBS_dl
2R	6470780	2R_6470780_SNP [dm3] 2R_10583275_SNP [dm6]	A	T	6.619e^-4	0.997	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	1154738	3R_1154738_SNP [dm3] 3R_5329016_SNP [dm6]	G	C	6.634e^-4	0.997	INTRON mtd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	17718706	3L_17718706_SNP [dm3] 3L_17725606_SNP [dm6]	A	G	6.640e^-4	0.997	SYNONYMOUS_CODING CG6052 INTRON Ccn
3R	11124440	3R_11124440_SNP [dm3] 3R_15298718_SNP [dm6]	A	C	6.640e^-4	0.997	INTRON Tm1
2L	2381048	2L_2381048_SNP [dm3] 2L_2381048_SNP [dm6]	G	C	6.649e^-4	0.997	UPSTREAM Eogt DOWNSTREAM Atxn7 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11128962	2L_11128962_INS [dm3] 2L_11128962_INS [dm6]	T	TT	6.662e^-4	0.997	UTR_3_PRIME Nup160 & 1 other	TF binding site mE1_TFBS_cad
3L	9398338	3L_9398338_SNP [dm3] 3L_9405238_SNP [dm6]	A	C	6.697e^-4	0.997	DOWNSTREAM CG4022 INTRON Cpr67B
2L	7704749	2L_7704749_SNP [dm3] 2L_7704749_SNP [dm6]	G	T	6.722e^-4	0.997	INTRON Tep3
3L	12823565	3L_12823565_SNP [dm3] 3L_12830465_SNP [dm6]	A	G	6.728e^-4	0.997	INTRON CG10960	TF binding site mE1_TFBS_cnc
3R	19408966	3R_19408966_SNP [dm3] 3R_23583244_SNP [dm6]	C	A	6.735e^-4	0.997	INTERGENIC
3R	20994234	3R_20994234_SNP [dm3] 3R_25168512_SNP [dm6]	T	A	6.743e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	9179329	3L_9179329_SNP [dm3] 3L_9186229_SNP [dm6]	T	G	6.759e^-4	0.997	INTERGENIC
3R	8130936	3R_8130936_SNP [dm3] 3R_12305214_SNP [dm6]	A	T	6.796e^-4	0.997	INTERGENIC
2R	11812895	2R_11812895_SNP [dm3] 2R_15925390_SNP [dm6]	A	G	6.802e^-4	0.997	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4177634	2L_4177634_SNP [dm3] 2L_4177634_SNP [dm6]	T	C	6.808e^-4	0.997	INTERGENIC
3R	8379057	3R_8379057_SNP [dm3] 3R_12553335_SNP [dm6]	C	A	6.813e^-4	0.997	INTRON Octbeta2R
3R	8379083	3R_8379083_SNP [dm3] 3R_12553361_SNP [dm6]	G	C	6.813e^-4	0.997	INTRON Octbeta2R
3L	8804730	3L_8804730_SNP [dm3] 3L_8811630_SNP [dm6]	T	A	6.822e^-4	0.997	DOWNSTREAM CG13309 INTERGENIC	TF binding site mE1_TFBS_inv
3L	18261062	3L_18261062_SNP [dm3] 3L_18267962_SNP [dm6]	C	T	6.836e^-4	0.997	INTERGENIC
2L	7592874	2L_7592874_INS [dm3] 2L_7592874_INS [dm6]	T	TT	6.862e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10704847	2L_10704847_SNP [dm3] 2L_10704847_SNP [dm6]	G	A	6.864e^-4	0.997	SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15412939	2R_15412939_SNP [dm3] 2R_19525434_SNP [dm6]	A	T	6.874e^-4	0.997	UTR_3_PRIME sm
X	11664665	X_11664665_SNP [dm3] X_11770632_SNP [dm6]	G	A	6.878e^-4	0.997	UTR_3_PRIME dy
2R	14326149	2R_14326149_SNP [dm3] 2R_18438644_SNP [dm6]	T	C	6.887e^-4	0.997	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14326154	2R_14326154_SNP [dm3] 2R_18438649_SNP [dm6]	A	G	6.887e^-4	0.997	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25032361	3R_25032361_SNP [dm3] 3R_29206639_SNP [dm6]	C	T	6.901e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13062908	2R_13062908_SNP [dm3] 2R_17175403_SNP [dm6]	G	A	7.004e^-4	0.997	INTERGENIC
X	13253189	X_13253189_SNP [dm3] X_13359156_SNP [dm6]	C	G	7.049e^-4	0.997	UPSTREAM Syt12 INTERGENIC
3L	6562849	3L_6562849_DEL [dm3] 3L_6569749_DEL [dm6]	AA	A	7.060e^-4	0.997	INTRON CG18769 & 1 other
2L	2269355	2L_2269355_SNP [dm3] 2L_2269355_SNP [dm6]	T	G	7.066e^-4	0.997	UPSTREAM CG17242 INTERGENIC
X	14768754	X_14768754_SNP [dm3] X_14874721_SNP [dm6]	C	T	7.071e^-4	0.997	DOWNSTREAM CG45065 & 1 other INTRON Flo2
2R	14364603	2R_14364603_SNP [dm3] 2R_18477098_SNP [dm6]	A	T	7.078e^-4	0.997	INTRON CG30116	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17655852	2R_17655852_SNP [dm3] 2R_21768347_SNP [dm6]	C	T	7.100e^-4	0.997	NON_SYNONYMOUS_CODING CG30395
3R	19437582	3R_19437582_INS [dm3] 3R_23611860_INS [dm6]	G	GTGT	7.104e^-4	0.997	INTRON CG31145
3R	19437584	3R_19437584_DEL [dm3] 3R_23611862_DEL [dm6]	TACAC	T	7.104e^-4	0.997	INTRON CG31145
3R	25905383	3R_25905383_SNP [dm3] 3R_30079661_SNP [dm6]	T	G	7.114e^-4	0.997	INTRON sima
X	12450265	X_12450265_SNP [dm3] X_12556232_SNP [dm6]	G	T	7.128e^-4	0.997	INTRON CG43921
X	5407875	X_5407875_INS [dm3] X_5513842_INS [dm6]	A	AC	7.128e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8569418	3L_8569418_SNP [dm3] 3L_8576318_SNP [dm6]	A	G	7.149e^-4	0.997	UPSTREAM CG43078 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2L	12515129	2L_12515129_SNP [dm3] 2L_12515129_SNP [dm6]	G	A	7.151e^-4	0.997	INTRON bun
2R	14274403	2R_14274403_SNP [dm3] 2R_18386898_SNP [dm6]	C	T	7.163e^-4	0.997	UTR_3_PRIME IM2 UPSTREAM IM3
3R	11092796	3R_11092796_SNP [dm3] 3R_15267074_SNP [dm6]	G	T	7.167e^-4	0.997	SYNONYMOUS_CODING CG14864 DOWNSTREAM Oscp	TF binding site mE1_TFBS_sens
2R	19128106	2R_19128106_SNP [dm3] 2R_23240583_SNP [dm6]	A	C	7.175e^-4	0.997	INTERGENIC
2R	11724791	2R_11724791_SNP [dm3] 2R_15837286_SNP [dm6]	G	A	7.178e^-4	0.997	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	18291725	3L_18291725_SNP [dm3] 3L_18298625_SNP [dm6]	T	C	7.185e^-4	0.997	DOWNSTREAM CG13700 INTERGENIC
2R	16251974	2R_16251974_SNP [dm3] 2R_20364469_SNP [dm6]	T	C	7.209e^-4	0.997	INTERGENIC
3R	19170956	3R_19170956_SNP [dm3] 3R_23345234_SNP [dm6]	A	C	7.249e^-4	0.997	INTRON pnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	19171002	3R_19171002_SNP [dm3] 3R_23345280_SNP [dm6]	A	G	7.249e^-4	0.997	INTRON pnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	19171003	3R_19171003_SNP [dm3] 3R_23345281_SNP [dm6]	T	A	7.249e^-4	0.997	INTRON pnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	19171030	3R_19171030_SNP [dm3] 3R_23345308_SNP [dm6]	T	C	7.249e^-4	0.997	INTRON pnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	20994253	3R_20994253_SNP [dm3] 3R_25168531_SNP [dm6]	G	A	7.276e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	18886042	3R_18886042_SNP [dm3] 3R_23060320_SNP [dm6]	T	A	7.330e^-4	0.997	INTRON sav	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22106523	3R_22106523_SNP [dm3] 3R_26280801_SNP [dm6]	C	G	7.338e^-4	0.997	INTERGENIC
3R	22106540	3R_22106540_SNP [dm3] 3R_26280818_SNP [dm6]	T	G	7.338e^-4	0.997	INTERGENIC
2L	22533240	2L_22533240_SNP [dm3] 2L_22640508_SNP [dm6]	G	C	7.378e^-4	0.997	INTRON CG40006
2R	7046199	2R_7046199_SNP [dm3] 2R_11158694_SNP [dm6]	T	C	7.390e^-4	0.997	UPSTREAM shn INTRON CG13229
3R	27493313	3R_27493313_SNP [dm3] 3R_31667591_SNP [dm6]	T	A	7.392e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8979781	3R_8979781_SNP [dm3] 3R_13154059_SNP [dm6]	G	A	7.395e^-4	0.997	INTRON timeout & 2 others
2L	11525862	2L_11525862_SNP [dm3] 2L_11525862_SNP [dm6]	G	T	7.397e^-4	0.997	INTRON CG31705
3L	8874469	3L_8874469_SNP [dm3] 3L_8881369_SNP [dm6]	G	A	7.426e^-4	0.997	INTRON dally
3R	9834110	3R_9834110_SNP [dm3] 3R_14008388_SNP [dm6]	C	A	7.444e^-4	0.997	INTRON rdx
2R	16138687	2R_16138687_SNP [dm3] 2R_20251182_SNP [dm6]	G	C	7.446e^-4	0.997	INTRON CG9864
2L	7589910	2L_7589910_SNP [dm3] 2L_7589910_SNP [dm6]	T	A	7.449e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	20671679	3L_20671679_SNP [dm3] 3L_20678579_SNP [dm6]	A	C	7.456e^-4	0.997	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10642948	3L_10642948_DEL [dm3] 3L_10649848_DEL [dm6]	TCCCCAACT	T	7.459e^-4	0.997	INTRON CG32066	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12121446	3L_12121446_SNP [dm3] 3L_12128346_SNP [dm6]	A	C	7.466e^-4	0.997	SYNONYMOUS_CODING CG34241 UPSTREAM Ir68b
2R	18610109	2R_18610109_SNP [dm3] 2R_22722604_SNP [dm6]	C	T	7.489e^-4	0.997	UTR_3_PRIME jbug INTRON jbug
3L	758749	3L_758749_SNP [dm3] 3L_758749_SNP [dm6]	A	G	7.495e^-4	0.997	INTERGENIC
3R	13608605	3R_13608605_SNP [dm3] 3R_17782883_SNP [dm6]	A	C	7.541e^-4	0.997	SYNONYMOUS_CODING CG43102 UTR_5_PRIME CG43102	TF binding site mE1_TFBS_cad
2L	8225058	2L_8225058_SNP [dm3] 2L_8225058_SNP [dm6]	C	T	7.546e^-4	0.997	INTRON Pvr
2R	15270364	2R_15270364_SNP [dm3] 2R_19382859_SNP [dm6]	T	C	7.552e^-4	0.997	SYNONYMOUS_CODING CG10073
3R	3240635	3R_3240635_SNP [dm3] 3R_7414913_SNP [dm6]	C	A	7.565e^-4	0.997	INTERGENIC
3R	10213098	3R_10213098_SNP [dm3] 3R_14387376_SNP [dm6]	T	C	7.575e^-4	0.997	INTERGENIC
2R	1831152	2R_1831152_SNP [dm3] 2R_5943647_SNP [dm6]	C	T	7.617e^-4	0.997	INTERGENIC
3L	13430492	3L_13430492_SNP [dm3] 3L_13437392_SNP [dm6]	T	C	7.672e^-4	0.997	UPSTREAM CG10725 & 1 other INTERGENIC
2L	3675357	2L_3675357_INS [dm3] 2L_3675357_INS [dm6]	C	CTC	7.678e^-4	0.997	INTRON CG34340
2R	15572388	2R_15572388_SNP [dm3] 2R_19684883_SNP [dm6]	G	A	7.680e^-4	0.997	UPSTREAM CR44505 DOWNSTREAM CG15128 INTERGENIC
2L	10462960	2L_10462960_SNP [dm3] 2L_10462960_SNP [dm6]	G	T	7.691e^-4	0.997	DOWNSTREAM RluA-1 & 1 other INTERGENIC
X	1605041	X_1605041_SNP [dm3] X_1711008_SNP [dm6]	A	G	7.705e^-4	0.997	UPSTREAM CG3795 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	26599558	3R_26599558_SNP [dm3] 3R_30773836_SNP [dm6]	T	C	7.705e^-4	0.997	INTRON zfh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	27488126	3R_27488126_SNP [dm3] 3R_31662404_SNP [dm6]	G	A	7.718e^-4	0.997	UTR_3_PRIME kek6
2L	7699423	2L_7699423_SNP [dm3] 2L_7699423_SNP [dm6]	G	C	7.729e^-4	0.997	SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_sens
2L	1689530	2L_1689530_INS [dm3] 2L_1689530_INS [dm6]	G	GGT	7.755e^-4	0.997	INTRON chinmo	TF binding site mE1_TFBS_HSA
2R	16861254	2R_16861254_SNP [dm3] 2R_20973749_SNP [dm6]	A	G	7.785e^-4	0.997	INTRON CG15649
3L	7457742	3L_7457742_SNP [dm3] 3L_7464642_SNP [dm6]	T	G	7.819e^-4	0.997	UPSTREAM Tsp66A & 2 others INTERGENIC
X	13236657	X_13236657_SNP [dm3] X_13342624_SNP [dm6]	C	T	7.876e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13435348	3L_13435348_SNP [dm3] 3L_13442248_SNP [dm6]	A	C	7.899e^-4	0.997	SYNONYMOUS_CODING CG14109 UPSTREAM CG10732	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	12270822	2R_12270822_SNP [dm3] 2R_16383317_SNP [dm6]	A	G	7.916e^-4	0.997	UTR_3_PRIME CG43187
2L	8331658	2L_8331658_SNP [dm3] 2L_8331658_SNP [dm6]	G	A	7.938e^-4	0.997	INTRON CG14275
3L	13490598	3L_13490598_SNP [dm3] 3L_13497498_SNP [dm6]	T	C	7.946e^-4	0.997	INTRON Tgi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17923703	3L_17923703_SNP [dm3] 3L_17930603_SNP [dm6]	T	G	7.996e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	17923974	3L_17923974_SNP [dm3] 3L_17930874_SNP [dm6]	A	C	7.996e^-4	0.997	INTERGENIC
2L	11343846	2L_11343846_SNP [dm3] 2L_11343846_SNP [dm6]	T	A	8.013e^-4	0.997	UPSTREAM CG14926 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3910611	3L_3910611_DEL [dm3] 3L_3910611_DEL [dm6]	GG	G	8.021e^-4	0.997	UTR_3_PRIME Eip63F-1 UPSTREAM mge
3R	6478533	3R_6478533_SNP [dm3] 3R_10652811_SNP [dm6]	T	C	8.027e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cnc
3R	6478536	3R_6478536_SNP [dm3] 3R_10652814_SNP [dm6]	T	C	8.027e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cnc
3R	6478538	3R_6478538_SNP [dm3] 3R_10652816_SNP [dm6]	T	A	8.027e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cnc
3R	11201027	3R_11201027_SNP [dm3] 3R_15375305_SNP [dm6]	A	C	8.028e^-4	0.997	UTR_5_PRIME Rbp UPSTREAM Rbp INTRON Rbp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1828364	3L_1828364_SNP [dm3] 3L_1828364_SNP [dm6]	A	G	8.029e^-4	0.997	INTRON Cpr62Ba
2R	17370907	2R_17370907_SNP [dm3] 2R_21483402_SNP [dm6]	A	G	8.072e^-4	0.997	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13103314	3L_13103314_SNP [dm3] 3L_13110214_SNP [dm6]	C	G	8.104e^-4	0.997	INTERGENIC
2L	10903502	2L_10903502_SNP [dm3] 2L_10903502_SNP [dm6]	G	A	8.108e^-4	0.997	DOWNSTREAM CR45724 INTERGENIC
2L	10903503	2L_10903503_SNP [dm3] 2L_10903503_SNP [dm6]	A	G	8.108e^-4	0.997	DOWNSTREAM CR45724 INTERGENIC
3L	11109721	3L_11109721_SNP [dm3] 3L_11116621_SNP [dm6]	G	A	8.113e^-4	0.997	INTRON fd68A
3R	18984488	3R_18984488_SNP [dm3] 3R_23158766_SNP [dm6]	C	T	8.118e^-4	0.997	SYNONYMOUS_CODING VhaAC39-2 UPSTREAM unk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	6658719	2R_6658719_SNP [dm3] 2R_10771214_SNP [dm6]	T	A	8.181e^-4	0.997	INTRON CG33144	TF binding site mE1_TFBS_HSA
X	12450262	X_12450262_SNP [dm3] X_12556229_SNP [dm6]	C	T	8.205e^-4	0.997	INTRON CG43921
3R	13036210	3R_13036210_SNP [dm3] 3R_17210488_SNP [dm6]	C	T	8.222e^-4	0.997	INTERGENIC
3L	11705030	3L_11705030_SNP [dm3] 3L_11711930_SNP [dm6]	T	C	8.228e^-4	0.997	UPSTREAM crim DOWNSTREAM CG14132 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	11705031	3L_11705031_SNP [dm3] 3L_11711931_SNP [dm6]	C	G	8.228e^-4	0.997	UPSTREAM crim DOWNSTREAM CG14132 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	11864778	2L_11864778_INS [dm3] 2L_11864778_INS [dm6]	T	TT	8.230e^-4	0.997	INTRON Pde1c
2R	6332745	2R_6332745_SNP [dm3] 2R_10445240_SNP [dm6]	A	G	8.246e^-4	0.997	SPLICE_SITE_REGION Galphao START_GAINED Galphao UTR_5_PRIME Galphao INTRON Galphao	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	25386007	3R_25386007_SNP [dm3] 3R_29560285_SNP [dm6]	A	G	8.257e^-4	0.997	INTRON Dr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	6470233	2R_6470233_SNP [dm3] 2R_10582728_SNP [dm6]	T	C	8.262e^-4	0.997	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	13641982	3L_13641982_SNP [dm3] 3L_13648882_SNP [dm6]	G	A	8.268e^-4	0.997	INTRON bru-3
2R	19344030	2R_19344030_SNP [dm3] 2R_23456507_SNP [dm6]	G	C	8.278e^-4	0.997	SYNONYMOUS_CODING CG43795	TF binding site mE1_TFBS_chinmo
3R	11094838	3R_11094838_SNP [dm3] 3R_15269116_SNP [dm6]	T	A	8.286e^-4	0.997	SYNONYMOUS_CODING Zip88E UPSTREAM CG14864	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	9341795	3R_9341795_SNP [dm3] 3R_13516073_SNP [dm6]	A	T	8.303e^-4	0.997	INTERGENIC
3R	8362211	3R_8362211_SNP [dm3] 3R_12536489_SNP [dm6]	T	C	8.322e^-4	0.997	INTRON Octbeta3R
2R	5147666	2R_5147666_SNP [dm3] 2R_9260161_SNP [dm6]	C	T	8.326e^-4	0.997	DOWNSTREAM CG34141 INTRON Pkn	TF binding site mE1_TFBS_cad
3R	20930157	3R_20930157_SNP [dm3] 3R_25104435_SNP [dm6]	C	A	8.343e^-4	0.997	NON_SYNONYMOUS_CODING CG34027 DOWNSTREAM CG45095
3R	6471797	3R_6471797_SNP [dm3] 3R_10646075_SNP [dm6]	G	A	8.351e^-4	0.997	DOWNSTREAM CR44018 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17981208	2R_17981208_SNP [dm3] 2R_22093703_SNP [dm6]	C	G	8.363e^-4	0.997	SYNONYMOUS_CODING CG11073 INTRON CG11073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7521043	2R_7521043_SNP [dm3] 2R_11633538_SNP [dm6]	C	G	8.365e^-4	0.997	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	8199751	2L_8199751_SNP [dm3] 2L_8199751_SNP [dm6]	G	A	8.366e^-4	0.997	SYNONYMOUS_CODING PGAP5 DOWNSTREAM CG8460 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16545968	2L_16545968_SNP [dm3] 2L_16545968_SNP [dm6]	A	G	8.398e^-4	0.997	INTRON CG42389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	24140847	3R_24140847_SNP [dm3] 3R_28315125_SNP [dm6]	T	C	8.399e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_inv
3R	24140852	3R_24140852_SNP [dm3] 3R_28315130_SNP [dm6]	A	C	8.399e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_inv
3R	24140853	3R_24140853_SNP [dm3] 3R_28315131_SNP [dm6]	A	C	8.399e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_inv
2L	22128351	2L_22128351_DEL [dm3] 2L_22128351_DEL [dm6]	ATAA	A	8.405e^-4	0.997	UTR_3_PRIME CycK
3L	13435956	3L_13435956_INS [dm3] 3L_13442856_INS [dm6]	G	GACG	8.454e^-4	0.997	CODON_INSERTION CG10732 UPSTREAM CG10732 DOWNSTREAM CG14109	TF binding site BDTNP1_TFBS_hb
3L	10541117	3L_10541117_SNP [dm3] 3L_10548017_SNP [dm6]	C	A	8.460e^-4	0.997	INTRON A2bp1
2L	7599740	2L_7599740_SNP [dm3] 2L_7599740_SNP [dm6]	C	G	8.501e^-4	0.997	INTERGENIC
2R	8309316	2R_8309316_SNP [dm3] 2R_12421811_SNP [dm6]	A	C	8.505e^-4	0.997	INTRON CG8834	TF binding site mE1_TFBS_cad
3L	15194979	3L_15194979_SNP [dm3] 3L_15201879_SNP [dm6]	C	T	8.523e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15541345	3L_15541345_SNP [dm3] 3L_15548245_SNP [dm6]	A	G	8.536e^-4	0.997	INTRON CrebA	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	15541412	3L_15541412_DEL [dm3] 3L_15548312_DEL [dm6]	TA	T	8.536e^-4	0.997	INTRON CrebA	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	15541419	3L_15541419_SNP [dm3] 3L_15548319_SNP [dm6]	G	C	8.536e^-4	0.997	INTRON CrebA	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	13037400	3R_13037400_SNP [dm3] 3R_17211678_SNP [dm6]	A	G	8.549e^-4	0.997	INTERGENIC
3L	8804760	3L_8804760_SNP [dm3] 3L_8811660_SNP [dm6]	C	G	8.571e^-4	0.997	DOWNSTREAM CG13309 INTERGENIC	TF binding site mE1_TFBS_inv
2L	8310665	2L_8310665_SNP [dm3] 2L_8310665_SNP [dm6]	C	T	8.582e^-4	0.997	SYNONYMOUS_CODING CG7810 UPSTREAM CG7806 DOWNSTREAM CG7818	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	19592952	2R_19592952_SNP [dm3] 2R_23705429_SNP [dm6]	A	C	8.585e^-4	0.997	DOWNSTREAM l_2_not & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11110306	3L_11110306_SNP [dm3] 3L_11117206_SNP [dm6]	G	T	8.600e^-4	0.997	INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	3487864	3L_3487864_INS [dm3] 3L_3487864_INS [dm6]	C	CT	8.625e^-4	0.997	INTRON CG42324
2R	16364250	2R_16364250_SNP [dm3] 2R_20476745_SNP [dm6]	T	C	8.626e^-4	0.997	INTRON CG12484
2R	11581283	2R_11581283_SNP [dm3] 2R_15693778_SNP [dm6]	T	A	8.636e^-4	0.997	UPSTREAM CG33460 DOWNSTREAM CG30087 EXON CR44372	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6032764	2R_6032764_SNP [dm3] 2R_10145259_SNP [dm6]	C	T	8.647e^-4	0.997	SYNONYMOUS_CODING CG18011 DOWNSTREAM KCNQ
3R	13035257	3R_13035257_SNP [dm3] 3R_17209535_SNP [dm6]	C	T	8.651e^-4	0.997	INTERGENIC
2R	8866092	2R_8866092_SNP [dm3] 2R_12978587_SNP [dm6]	G	A	8.659e^-4	0.997	INTRON Psc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Trl
2R	9345967	2R_9345967_SNP [dm3] 2R_13458462_SNP [dm6]	G	A	8.679e^-4	0.997	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11092637	3R_11092637_SNP [dm3] 3R_15266915_SNP [dm6]	T	A	8.703e^-4	0.997	SYNONYMOUS_CODING CG14864 DOWNSTREAM Oscp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11092874	3R_11092874_SNP [dm3] 3R_15267152_SNP [dm6]	T	C	8.703e^-4	0.997	SYNONYMOUS_CODING CG14864 DOWNSTREAM Oscp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11109554	2L_11109554_SNP [dm3] 2L_11109554_SNP [dm6]	T	A	8.716e^-4	0.997	INTRON l_2_gd1
3R	13838975	3R_13838975_SNP [dm3] 3R_18013253_SNP [dm6]	G	A	8.718e^-4	0.997	SYNONYMOUS_CODING cpo UTR_3_PRIME cpo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8358428	2L_8358428_SNP [dm3] 2L_8358428_SNP [dm6]	C	G	8.724e^-4	0.997	SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_twi
2R	4614055	2R_4614055_SNP [dm3] 2R_8726550_SNP [dm6]	T	C	8.732e^-4	0.997	INTRON gcl
3L	13103591	3L_13103591_SNP [dm3] 3L_13110491_SNP [dm6]	C	T	8.742e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	11108569	3L_11108569_SNP [dm3] 3L_11115469_SNP [dm6]	T	C	8.767e^-4	0.997	INTRON fd68A
2R	7225348	2R_7225348_SNP [dm3] 2R_11337843_SNP [dm6]	A	T	8.783e^-4	0.997	UTR_3_PRIME kappaTry DOWNSTREAM lambdaTry	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20184676	X_20184676_SNP [dm3] X_20313649_SNP [dm6]	A	G	8.788e^-4	0.997	INTRON CG1504
2L	13692860	2L_13692860_SNP [dm3] 2L_13692860_SNP [dm6]	T	C	8.790e^-4	0.997	INTRON CG31814
3R	13627041	3R_13627041_SNP [dm3] 3R_17801319_SNP [dm6]	A	G	8.828e^-4	0.997	UPSTREAM CG17803 DOWNSTREAM CG17806 INTERGENIC
3L	9179132	3L_9179132_SNP [dm3] 3L_9186032_SNP [dm6]	C	T	8.830e^-4	0.997	INTERGENIC
3R	9341885	3R_9341885_SNP [dm3] 3R_13516163_SNP [dm6]	G	A	8.830e^-4	0.997	INTERGENIC
2R	18289952	2R_18289952_SNP [dm3] 2R_22402447_SNP [dm6]	T	C	8.831e^-4	0.997	UPSTREAM babos DOWNSTREAM CR44760 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12351110	2L_12351110_SNP [dm3] 2L_12351110_SNP [dm6]	T	C	8.904e^-4	0.997	INTRON bru-2
2R	19304160	2R_19304160_SNP [dm3] 2R_23416637_SNP [dm6]	T	G	8.907e^-4	0.997	UTR_3_PRIME CG30411 INTRON CG9812	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	1487313	3L_1487313_SNP [dm3] 3L_1487313_SNP [dm6]	T	G	8.911e^-4	0.997	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2L	12666797	2L_12666797_SNP [dm3] 2L_12666797_SNP [dm6]	A	G	8.925e^-4	0.997	DOWNSTREAM CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4177872	2L_4177872_SNP [dm3] 2L_4177872_SNP [dm6]	G	A	8.935e^-4	0.997	INTERGENIC
2L	18767218	2L_18767218_SNP [dm3] 2L_18767218_SNP [dm6]	T	C	8.966e^-4	0.997	INTRON ham
2R	11724903	2R_11724903_SNP [dm3] 2R_15837398_SNP [dm6]	C	T	9.016e^-4	0.997	INTRON tun	regulatory region REDfly_CRMs
2L	22539386	2L_22539386_SNP [dm3] 2L_22646654_SNP [dm6]	G	T	9.021e^-4	0.997	INTRON CG40006
2L	16387035	2L_16387035_SNP [dm3] 2L_16387035_SNP [dm6]	G	A	9.040e^-4	0.997	INTERGENIC
2R	7507945	2R_7507945_SNP [dm3] 2R_11620440_SNP [dm6]	A	G	9.047e^-4	0.997	UTR_3_PRIME CG9005
2L	12666835	2L_12666835_SNP [dm3] 2L_12666835_SNP [dm6]	C	T	9.059e^-4	0.997	DOWNSTREAM CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7973107	3L_7973107_SNP [dm3] 3L_7980007_SNP [dm6]	T	C	9.088e^-4	0.997	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3L	7973409	3L_7973409_SNP [dm3] 3L_7980309_SNP [dm6]	A	G	9.088e^-4	0.997	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	10891250	2L_10891250_SNP [dm3] 2L_10891250_SNP [dm6]	A	G	9.144e^-4	0.997	INTERGENIC
2L	8308406	2L_8308406_SNP [dm3] 2L_8308406_SNP [dm6]	G	A	9.154e^-4	0.997	UPSTREAM CG7818 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	20084087	2R_20084087_SNP [dm3] 2R_24196564_SNP [dm6]	C	T	9.190e^-4	0.997	SYNONYMOUS_CODING cN-IIIB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20231867	2R_20231867_SNP [dm3] 2R_24344344_SNP [dm6]	G	A	9.203e^-4	0.997	SYNONYMOUS_CODING bs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16204242	3L_16204242_DEL [dm3] 3L_16211142_DEL [dm6]	TT	T	9.216e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14242906	3L_14242906_SNP [dm3] 3L_14249806_SNP [dm6]	C	T	9.234e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15472706	2R_15472706_SNP [dm3] 2R_19585201_SNP [dm6]	A	T	9.240e^-4	0.997	INTRON sm
2R	17897289	2R_17897289_SNP [dm3] 2R_22009784_SNP [dm6]	G	A	9.257e^-4	0.997	INTRON CG34370
2R	16692431	2R_16692431_SNP [dm3] 2R_20804926_SNP [dm6]	G	A	9.273e^-4	0.997	INTERGENIC
3L	10643912	3L_10643912_SNP [dm3] 3L_10650812_SNP [dm6]	T	A	9.288e^-4	0.997	INTRON CG32066
3L	10643913	3L_10643913_SNP [dm3] 3L_10650813_SNP [dm6]	G	T	9.288e^-4	0.997	INTRON CG32066
3L	10643916	3L_10643916_SNP [dm3] 3L_10650816_SNP [dm6]	A	T	9.288e^-4	0.997	INTRON CG32066
3L	10643917	3L_10643917_SNP [dm3] 3L_10650817_SNP [dm6]	G	T	9.288e^-4	0.997	INTRON CG32066
3L	10643924	3L_10643924_DEL [dm3] 3L_10650824_DEL [dm6]	TT	T	9.288e^-4	0.997	INTRON CG32066
3L	10643937	3L_10643937_DEL [dm3] 3L_10650837_DEL [dm6]	CAAA	T	9.288e^-4	0.997	INTRON CG32066
3L	7007909	3L_7007909_SNP [dm3] 3L_7014809_SNP [dm6]	C	T	9.295e^-4	0.997	UTR_5_PRIME Mp INTRON Mp
2R	11314872	2R_11314872_SNP [dm3] 2R_15427367_SNP [dm6]	C	A	9.299e^-4	0.997	INTRON CG43729 & 1 other
2L	14980684	2L_14980684_SNP [dm3] 2L_14980684_SNP [dm6]	A	C	9.309e^-4	0.997	INTRON mol
3L	16786637	3L_16786637_SNP [dm3] 3L_16793537_SNP [dm6]	T	C	9.335e^-4	0.997	SYNONYMOUS_CODING CG9674	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10031191	3L_10031191_DEL [dm3] 3L_10038091_DEL [dm6]	CA	C	9.384e^-4	0.997	INTRON dpr6
3R	13275018	3R_13275018_SNP [dm3] 3R_17449296_SNP [dm6]	G	T	9.396e^-4	0.997	UPSTREAM Eh INTERGENIC	TF binding site mE1_TFBS_bab1
3R	27190579	3R_27190579_SNP [dm3] 3R_31364857_SNP [dm6]	T	G	9.406e^-4	0.997	INTRON CG34347
3R	25469985	3R_25469985_SNP [dm3] 3R_29644263_SNP [dm6]	C	T	9.423e^-4	0.997	INTRON Dop1R2
3R	25469987	3R_25469987_SNP [dm3] 3R_29644265_SNP [dm6]	G	C	9.423e^-4	0.997	INTRON Dop1R2
2R	15546632	2R_15546632_SNP [dm3] 2R_19659127_SNP [dm6]	G	A	9.440e^-4	0.997	DOWNSTREAM CR44504 INTRON CG15125	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4258412	2R_4258412_SNP [dm3] 2R_8370907_SNP [dm6]	T	G	9.457e^-4	0.997	UPSTREAM CG2127 & 1 other INTRON pdm3
2L	4186779	2L_4186779_SNP [dm3] 2L_4186779_SNP [dm6]	C	T	9.467e^-4	0.997	SYNONYMOUS_CODING CG31961 DOWNSTREAM CR44057	TF binding site mE1_TFBS_sens
3L	758706	3L_758706_SNP [dm3] 3L_758706_SNP [dm6]	G	A	9.503e^-4	0.997	INTERGENIC
2R	5317762	2R_5317762_SNP [dm3] 2R_9430257_SNP [dm6]	T	G	9.552e^-4	0.997	INTRON Pdk
X	6493368	X_6493368_SNP [dm3] X_6599335_SNP [dm6]	C	T	9.568e^-4	0.997	UTR_3_PRIME APC7 UPSTREAM pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	4936330	2R_4936330_SNP [dm3] 2R_9048825_SNP [dm6]	A	C	9.601e^-4	0.997	INTRON CG13743	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2097650	2L_2097650_SNP [dm3] 2L_2097650_SNP [dm6]	T	A	9.604e^-4	0.997	INTRON dpr3
2R	8618444	2R_8618444_SNP [dm3] 2R_12730939_SNP [dm6]	T	C	9.635e^-4	0.997	INTRON CG42663	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11974333	2L_11974333_SNP [dm3] 2L_11974333_SNP [dm6]	T	G	9.644e^-4	0.997	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10712142	2R_10712142_SNP [dm3] 2R_14824637_SNP [dm6]	G	A	9.653e^-4	0.997	UPSTREAM CR45329 INTERGENIC
3R	27136552	3R_27136552_SNP [dm3] 3R_31310830_SNP [dm6]	T	G	9.691e^-4	0.997	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	7973389	3L_7973389_SNP [dm3] 3L_7980289_SNP [dm6]	T	A	9.704e^-4	0.997	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	27463489	3R_27463489_SNP [dm3] 3R_31637767_SNP [dm6]	G	A	9.704e^-4	0.997	INTRON kek6
3R	13625919	3R_13625919_SNP [dm3] 3R_17800197_SNP [dm6]	A	C	9.724e^-4	0.997	NON_SYNONYMOUS_CODING CG17803
3L	17590837	3L_17590837_SNP [dm3] 3L_17597737_SNP [dm6]	G	A	9.740e^-4	0.997	SYNONYMOUS_CODING Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	10961233	2L_10961233_SNP [dm3] 2L_10961233_SNP [dm6]	G	T	9.781e^-4	0.997	UTR_5_PRIME dpr2
2R	18896250	2R_18896250_SNP [dm3] 2R_23008727_SNP [dm6]	A	T	9.783e^-4	0.997	INTRON twi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8365239	3R_8365239_SNP [dm3] 3R_12539517_SNP [dm6]	G	A	9.794e^-4	0.997	INTRON Octbeta3R
3R	8365240	3R_8365240_SNP [dm3] 3R_12539518_SNP [dm6]	C	T	9.794e^-4	0.997	INTRON Octbeta3R
2L	3847469	2L_3847469_SNP [dm3] 2L_3847469_SNP [dm6]	G	A	9.831e^-4	0.997	INTERGENIC	TF binding site mE1_TFBS_inv
2R	17653911	2R_17653911_DEL [dm3] 2R_21766406_DEL [dm6]	TCTTCTGCAAT...	T	9.868e^-4	0.997	INTRON CG30395
2R	17653960	2R_17653960_SNP [dm3] 2R_21766455_SNP [dm6]	T	G	9.868e^-4	0.997	INTRON CG30395
2R	17654031	2R_17654031_SNP [dm3] 2R_21766526_SNP [dm6]	C	A	9.868e^-4	0.997	NON_SYNONYMOUS_CODING CG30395 INTRON CG30395
2L	7538042	2L_7538042_SNP [dm3] 2L_7538042_SNP [dm6]	G	A	9.882e^-4	0.997	INTRON RapGAP1	TF binding site mE1_TFBS_zfh1
3R	8379004	3R_8379004_SNP [dm3] 3R_12553282_SNP [dm6]	T	G	9.892e^-4	0.997	INTRON Octbeta2R	TF binding site BDTNP1_TFBS_sna
2R	15231874	2R_15231874_SNP [dm3] 2R_19344369_SNP [dm6]	T	C	9.901e^-4	0.997	UTR_3_PRIME CG9975 INTRON Rgk1
3R	22762605	3R_22762605_SNP [dm3] 3R_26936883_SNP [dm6]	T	C	9.921e^-4	0.997	INTRON sda
2R	17981177	2R_17981177_SNP [dm3] 2R_22093672_SNP [dm6]	C	G	9.922e^-4	0.997	NON_SYNONYMOUS_CODING CG11073 INTRON CG11073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9425593	3R_9425593_SNP [dm3] 3R_13599871_SNP [dm6]	G	A	9.955e^-4	0.997	INTERGENIC
2R	12004994	2R_12004994_SNP [dm3] 2R_16117489_SNP [dm6]	C	T	9.962e^-4	0.997	SYNONYMOUS_CODING Jhedup DOWNSTREAM Asph
3L	7005538	3L_7005538_SNP [dm3] 3L_7012438_SNP [dm6]	C	T	9.971e^-4	0.997	INTRON Mp	TF binding site mE1_TFBS_bab1
3R	9333787	3R_9333787_SNP [dm3] 3R_13508065_SNP [dm6]	G	A	9.982e^-4	0.997	INTERGENIC
2R	15875516	2R_15875516_SNP [dm3] 2R_19988011_SNP [dm6]	T	C	9.993e^-4	0.997	INTERGENIC

By genomic position
Variant impact
Gene name