DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.672e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.09218
In_3R_Mo	0.05303

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2114 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	12074434	3R_12074434_SNP [dm3] 3R_16248712_SNP [dm6]	T	G	7.959e^-7	0.612	INTRON tara	TF binding site BDTNP1_TFBS_dl
2L	3448452	2L_3448452_SNP [dm3] 2L_3448452_SNP [dm6]	A	G	1.064e^-6	0.612	DOWNSTREAM CG2772 INTERGENIC
3R	4691301	3R_4691301_SNP [dm3] 3R_8865579_SNP [dm6]	C	T	1.411e^-6	0.612	NON_SYNONYMOUS_CODING pyd INTRON pyd
3R	4723784	3R_4723784_SNP [dm3] 3R_8898062_SNP [dm6]	A	G	1.454e^-6	0.612	INTRON pyd	TF binding site BDTNP1_TFBS_dl
3L	5426620	3L_5426620_SNP [dm3] 3L_5433520_SNP [dm6]	G	A	1.673e^-6	0.612	INTRON CG34391
3R	12074278	3R_12074278_SNP [dm3] 3R_16248556_SNP [dm6]	G	A	2.497e^-6	0.663	INTRON tara	TF binding site BDTNP1_TFBS_dl
2R	13944740	2R_13944740_SNP [dm3] 2R_18057235_SNP [dm6]	T	G	2.535e^-6	0.663	UPSTREAM CG10912 DOWNSTREAM CR45314 INTERGENIC	TF binding site mE1_TFBS_cad
2R	7376248	2R_7376248_SNP [dm3] 2R_11488743_SNP [dm6]	C	A	3.336e^-6	0.696	INTRON inv
3R	12074225	3R_12074225_SNP [dm3] 3R_16248503_SNP [dm6]	G	A	3.804e^-6	0.696	INTRON tara	TF binding site BDTNP1_TFBS_dl
3R	12074276	3R_12074276_SNP [dm3] 3R_16248554_SNP [dm6]	C	T	3.804e^-6	0.696	INTRON tara	TF binding site BDTNP1_TFBS_dl
2R	16780132	2R_16780132_SNP [dm3] 2R_20892627_SNP [dm6]	A	C	5.005e^-6	0.732	INTRON otp
3L	15574049	3L_15574049_SNP [dm3] 3L_15580949_SNP [dm6]	C	T	5.221e^-6	0.732	SYNONYMOUS_CODING CG12301 UPSTREAM mrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10364076	2R_10364076_SNP [dm3] 2R_14476571_SNP [dm6]	G	A	5.854e^-6	0.732	EXON CR44462	TF binding site mE1_TFBS_sens
2R	12505825	2R_12505825_SNP [dm3] 2R_16618320_SNP [dm6]	C	T	5.946e^-6	0.732	INTRON CG5065
2R	16403358	2R_16403358_SNP [dm3] 2R_20515853_SNP [dm6]	A	G	6.430e^-6	0.732	INTERGENIC
3R	12074237	3R_12074237_SNP [dm3] 3R_16248515_SNP [dm6]	G	T	6.793e^-6	0.732	INTRON tara	TF binding site BDTNP1_TFBS_dl
3L	15007894	3L_15007894_SNP [dm3] 3L_15014794_SNP [dm6]	G	T	6.982e^-6	0.732	UTR_3_PRIME Sytbeta UPSTREAM Reck	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3L	18837505	3L_18837505_SNP [dm3] 3L_18844405_SNP [dm6]	C	T	7.646e^-6	0.732	INTRON Indy
2L	19949357	2L_19949357_SNP [dm3] 2L_19949357_SNP [dm6]	G	C	7.721e^-6	0.732	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11456748	2R_11456748_SNP [dm3] 2R_15569243_SNP [dm6]	C	T	8.779e^-6	0.732	UTR_5_PRIME CG30466 & 1 other DOWNSTREAM Cdk5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	3448415	2L_3448415_SNP [dm3] 2L_3448415_SNP [dm6]	T	C	9.079e^-6	0.732	DOWNSTREAM CG2772 INTERGENIC
3L	9230392	3L_9230392_SNP [dm3] 3L_9237292_SNP [dm6]	T	G	9.533e^-6	0.732	UPSTREAM CG4483 INTERGENIC
3R	4723832	3R_4723832_DEL [dm3] 3R_8898110_DEL [dm6]	TCTGCAAATCACAAT...	T	9.695e^-6	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_dl
3L	15574137	3L_15574137_SNP [dm3] 3L_15581037_SNP [dm6]	G	A	1.047e^-5	0.732	NON_SYNONYMOUS_CODING CG12301 UPSTREAM mrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	801523	2R_801523_SNP [dm3] 2R_4914018_SNP [dm6]	C	T	1.096e^-5	0.732	INTERGENIC	transposable element FlyBase
3R	12074291	3R_12074291_SNP [dm3] 3R_16248569_SNP [dm6]	A	G	1.117e^-5	0.732	INTRON tara	TF binding site BDTNP1_TFBS_dl
2R	10553107	2R_10553107_SNP [dm3] 2R_14665602_SNP [dm6]	T	A	1.384e^-5	0.732	UPSTREAM CG12861 DOWNSTREAM CG12860 INTERGENIC
2L	6767556	2L_6767556_SNP [dm3] 2L_6767556_SNP [dm6]	C	T	1.449e^-5	0.732	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo
2R	6327587	2R_6327587_INS [dm3] 2R_10440082_INS [dm6]	C	CG	1.465e^-5	0.732	INTRON Galphao	TF binding site BDTNP1_TFBS_twi
3L	15007586	3L_15007586_DEL [dm3] 3L_15014486_DEL [dm6]	TT	T	1.486e^-5	0.732	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	15007600	3L_15007600_SNP [dm3] 3L_15014500_SNP [dm6]	C	T	1.486e^-5	0.732	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	15573855	3L_15573855_SNP [dm3] 3L_15580755_SNP [dm6]	T	C	1.490e^-5	0.732	UPSTREAM CG12301 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15573972	3L_15573972_SNP [dm3] 3L_15580872_SNP [dm6]	A	G	1.490e^-5	0.732	UTR_5_PRIME CG12301 UPSTREAM mrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15573981	3L_15573981_SNP [dm3] 3L_15580881_SNP [dm6]	C	G	1.490e^-5	0.732	UTR_5_PRIME CG12301 UPSTREAM mrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15573995	3L_15573995_SNP [dm3] 3L_15580895_SNP [dm6]	T	C	1.490e^-5	0.732	SYNONYMOUS_CODING CG12301 UPSTREAM mrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7367505	2L_7367505_SNP [dm3] 2L_7367505_SNP [dm6]	A	T	1.588e^-5	0.732	INTRON Wnt10
3R	12283835	3R_12283835_SNP [dm3] 3R_16458113_SNP [dm6]	T	A	1.644e^-5	0.732	UTR_3_PRIME CG14883 DOWNSTREAM CG42232
2L	5297002	2L_5297002_SNP [dm3] 2L_5297002_SNP [dm6]	G	A	1.647e^-5	0.732	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11373616	3L_11373616_SNP [dm3] 3L_11380516_SNP [dm6]	C	G	1.682e^-5	0.732	INTERGENIC	TF binding site mE1_TFBS_cad
X	8647412	X_8647412_SNP [dm3] X_8753379_SNP [dm6]	C	T	1.729e^-5	0.732	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	4710640	3R_4710640_SNP [dm3] 3R_8884918_SNP [dm6]	T	C	1.753e^-5	0.732	INTRON pyd
2R	17128643	2R_17128643_SNP [dm3] 2R_21241138_SNP [dm6]	T	C	1.838e^-5	0.732	INTRON ASPP
2R	17128663	2R_17128663_SNP [dm3] 2R_21241158_SNP [dm6]	C	A	1.838e^-5	0.732	INTRON ASPP
2R	16404913	2R_16404913_SNP [dm3] 2R_20517408_SNP [dm6]	G	A	1.859e^-5	0.732	INTERGENIC
3L	8880883	3L_8880883_SNP [dm3] 3L_8887783_SNP [dm6]	C	T	2.092e^-5	0.732	DOWNSTREAM CG43169 INTRON dally
3L	15007645	3L_15007645_SNP [dm3] 3L_15014545_SNP [dm6]	C	T	2.102e^-5	0.732	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
X	14298123	X_14298123_SNP [dm3] X_14404090_SNP [dm6]	G	A	2.194e^-5	0.732	INTRON dpr8
3L	3578024	3L_3578024_INS [dm3] 3L_3578024_INS [dm6]	G	AA	2.342e^-5	0.732	INTRON Eip63E
3L	6897069	3L_6897069_SNP [dm3] 3L_6903969_SNP [dm6]	A	G	2.383e^-5	0.732	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6975860	2L_6975860_SNP [dm3] 2L_6975860_SNP [dm6]	C	A	2.470e^-5	0.732	SPLICE_SITE_REGION uif INTRON uif	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6327586	2R_6327586_SNP [dm3] 2R_10440081_SNP [dm6]	C	T	2.489e^-5	0.732	INTRON Galphao	TF binding site BDTNP1_TFBS_twi
2R	6088680	2R_6088680_SNP [dm3] 2R_10201175_SNP [dm6]	C	G	2.491e^-5	0.732	INTERGENIC
2L	3443810	2L_3443810_SNP [dm3] 2L_3443810_SNP [dm6]	G	T	2.525e^-5	0.732	INTERGENIC
3R	4721961	3R_4721961_SNP [dm3] 3R_8896239_SNP [dm6]	A	T	2.584e^-5	0.732	INTRON pyd	TF binding site mE1_TFBS_Trl
3L	15535351	3L_15535351_SNP [dm3] 3L_15542251_SNP [dm6]	G	A	2.645e^-5	0.732	INTRON CrebA
2L	19967461	2L_19967461_SNP [dm3] 2L_19967461_SNP [dm6]	A	G	2.690e^-5	0.732	NON_SYNONYMOUS_CODING Hf UPSTREAM OS9	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19967616	2L_19967616_SNP [dm3] 2L_19967616_SNP [dm6]	G	A	2.690e^-5	0.732	SYNONYMOUS_CODING Hf	TF binding site mE1_TFBS_cad
3L	8046491	3L_8046491_SNP [dm3] 3L_8053391_SNP [dm6]	T	C	2.695e^-5	0.732	UTR_3_PRIME nmo DOWNSTREAM nmo & 1 other
3L	1978092	3L_1978092_SNP [dm3] 3L_1978092_SNP [dm6]	G	A	2.822e^-5	0.732	INTERGENIC
3L	15007465	3L_15007465_SNP [dm3] 3L_15014365_SNP [dm6]	G	A	2.823e^-5	0.732	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9515303	2L_9515303_INS [dm3] 2L_9515303_INS [dm6]	T	TG	2.830e^-5	0.732	INTRON CG33298
2R	9236824	2R_9236824_SNP [dm3] 2R_13349319_SNP [dm6]	A	G	3.046e^-5	0.732	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7396526	2L_7396526_SNP [dm3] 2L_7396526_SNP [dm6]	C	T	3.065e^-5	0.732	UPSTREAM CG5160 INTRON CG5160
2L	9210118	2L_9210118_SNP [dm3] 2L_9210118_SNP [dm6]	A	G	3.215e^-5	0.732	INTRON tai
3L	15007177	3L_15007177_SNP [dm3] 3L_15014077_SNP [dm6]	T	G	3.221e^-5	0.732	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8908304	3L_8908304_SNP [dm3] 3L_8915204_SNP [dm6]	T	G	3.225e^-5	0.732	UPSTREAM CR43970 INTRON Tsp66E
2R	10343492	2R_10343492_SNP [dm3] 2R_14455987_SNP [dm6]	T	A	3.292e^-5	0.732	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20287869	2R_20287869_SNP [dm3] 2R_24400346_SNP [dm6]	C	T	3.302e^-5	0.732	SPLICE_SITE_REGION slik INTRON Rpn8 & 1 other	TF binding site mE1_TFBS_cad
2R	20287884	2R_20287884_SNP [dm3] 2R_24400361_SNP [dm6]	A	T	3.302e^-5	0.732	INTRON Rpn8 & 1 other	TF binding site mE1_TFBS_cad
3L	15007646	3L_15007646_SNP [dm3] 3L_15014546_SNP [dm6]	G	A	3.392e^-5	0.732	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
X	14297723	X_14297723_SNP [dm3] X_14403690_SNP [dm6]	C	T	3.397e^-5	0.732	INTRON dpr8
2R	6327545	2R_6327545_SNP [dm3] 2R_10440040_SNP [dm6]	T	C	3.399e^-5	0.732	INTRON Galphao	TF binding site BDTNP1_TFBS_twi
2R	20612411	2R_20612411_SNP [dm3] 2R_24724888_SNP [dm6]	T	C	3.561e^-5	0.732	INTRON Mid1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15430493	2L_15430493_SNP [dm3] 2L_15430493_SNP [dm6]	A	G	3.612e^-5	0.732	INTERGENIC
2R	15549897	2R_15549897_SNP [dm3] 2R_19662392_SNP [dm6]	A	G	3.626e^-5	0.732	UPSTREAM CG11018 & 4 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	12876831	2R_12876831_SNP [dm3] 2R_16989326_SNP [dm6]	T	A	3.626e^-5	0.732	INTRON Cbp53E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10546629	2L_10546629_SNP [dm3] 2L_10546629_SNP [dm6]	T	C	3.630e^-5	0.732	INTRON Trim9	TF binding site BDTNP1_TFBS_da
3L	8906259	3L_8906259_SNP [dm3] 3L_8913159_SNP [dm6]	A	G	3.630e^-5	0.732	UPSTREAM mfr INTRON Tsp66E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
X	14377624	X_14377624_SNP [dm3] X_14483591_SNP [dm6]	C	T	3.638e^-5	0.732	INTERGENIC
3L	14932426	3L_14932426_SNP [dm3] 3L_14939326_SNP [dm6]	T	G	3.662e^-5	0.732	INTRON DCX-EMAP
2L	20020816	2L_20020816_SNP [dm3] 2L_20020816_SNP [dm6]	T	A	3.711e^-5	0.732	INTERGENIC
2L	6767544	2L_6767544_SNP [dm3] 2L_6767544_SNP [dm6]	T	C	3.780e^-5	0.732	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo
X	14297692	X_14297692_SNP [dm3] X_14403659_SNP [dm6]	A	G	3.806e^-5	0.732	INTRON dpr8
3L	12586048	3L_12586048_SNP [dm3] 3L_12592948_SNP [dm6]	T	C	3.874e^-5	0.732	INTRON ara	TF binding site mE1_TFBS_HSA
3R	4739842	3R_4739842_SNP [dm3] 3R_8914120_SNP [dm6]	T	A	3.940e^-5	0.732	INTRON pyd
3R	3993712	3R_3993712_SNP [dm3] 3R_8167990_SNP [dm6]	C	T	3.969e^-5	0.732	SYNONYMOUS_CODING grn	TF binding site mE1_TFBS_chinmo
2L	4320551	2L_4320551_SNP [dm3] 2L_4320551_SNP [dm6]	G	A	4.026e^-5	0.732	SYNONYMOUS_CODING tutl UTR_3_PRIME tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15549919	2R_15549919_SNP [dm3] 2R_19662414_SNP [dm6]	C	T	4.155e^-5	0.732	UPSTREAM CG11018 & 4 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	9210115	2L_9210115_SNP [dm3] 2L_9210115_SNP [dm6]	T	G	4.185e^-5	0.732	INTRON tai
2R	9519408	2R_9519408_SNP [dm3] 2R_13631903_SNP [dm6]	T	C	4.237e^-5	0.732	INTRON fas
2R	13493212	2R_13493212_SNP [dm3] 2R_17605707_SNP [dm6]	A	G	4.323e^-5	0.732	DOWNSTREAM tRNA:CR30231 INTRON CG10936
2L	6975889	2L_6975889_SNP [dm3] 2L_6975889_SNP [dm6]	G	A	4.336e^-5	0.732	INTRON uif	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9990783	2L_9990783_SNP [dm3] 2L_9990783_SNP [dm6]	G	A	4.342e^-5	0.732	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20287931	2R_20287931_SNP [dm3] 2R_24400408_SNP [dm6]	T	C	4.416e^-5	0.732	SPLICE_SITE_REGION slik SYNONYMOUS_CODING slik INTRON Rpn8	TF binding site mE1_TFBS_cad
3L	13010352	3L_13010352_SNP [dm3] 3L_13017252_SNP [dm6]	T	C	4.577e^-5	0.732	NON_SYNONYMOUS_CODING mRpL20 DOWNSTREAM CG11267	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9735552	3L_9735552_SNP [dm3] 3L_9742452_SNP [dm6]	T	C	4.649e^-5	0.732	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_inv
2L	11373629	2L_11373629_SNP [dm3] 2L_11373629_SNP [dm6]	G	C	4.659e^-5	0.732	UTR_3_PRIME salr DOWNSTREAM salr	TF binding site mE1_TFBS_sbb
3R	10367946	3R_10367946_SNP [dm3] 3R_14542224_SNP [dm6]	T	A	4.683e^-5	0.732	INTRON Pde6
2R	9920679	2R_9920679_SNP [dm3] 2R_14033174_SNP [dm6]	A	G	4.801e^-5	0.732	INTRON mam
2R	9920694	2R_9920694_SNP [dm3] 2R_14033189_SNP [dm6]	G	A	4.801e^-5	0.732	INTRON mam
3R	4690920	3R_4690920_SNP [dm3] 3R_8865198_SNP [dm6]	A	C	4.845e^-5	0.732	NON_SYNONYMOUS_CODING pyd UTR_5_PRIME pyd UPSTREAM pyd
2R	11041058	2R_11041058_DEL [dm3] 2R_15153553_DEL [dm6]	AACAGCGA	A	4.870e^-5	0.732	INTERGENIC
2R	11041070	2R_11041070_SNP [dm3] 2R_15153565_SNP [dm6]	C	A	4.870e^-5	0.732	INTERGENIC
2R	11041071	2R_11041071_DEL [dm3] 2R_15153566_DEL [dm6]	TC	T	4.870e^-5	0.732	INTERGENIC
2R	18925504	2R_18925504_SNP [dm3] 2R_23037981_SNP [dm6]	T	C	4.903e^-5	0.732	INTRON twi & 1 other
2R	7685664	2R_7685664_SNP [dm3] 2R_11798159_SNP [dm6]	C	G	4.976e^-5	0.732	INTRON ths
X	13065622	X_13065622_SNP [dm3] X_13171589_SNP [dm6]	T	C	5.051e^-5	0.732	INTRON CG34411	TF binding site BDTNP1_TFBS_twi
2R	15549914	2R_15549914_SNP [dm3] 2R_19662409_SNP [dm6]	G	T	5.066e^-5	0.732	UPSTREAM CG11018 & 4 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	4767020	3R_4767020_SNP [dm3] 3R_8941298_SNP [dm6]	G	C	5.096e^-5	0.732	INTRON skap	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15007738	3L_15007738_SNP [dm3] 3L_15014638_SNP [dm6]	G	T	5.108e^-5	0.732	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	2609360	2R_2609360_SNP [dm3] 2R_6721855_SNP [dm6]	G	A	5.113e^-5	0.732	SYNONYMOUS_CODING l_2_01289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4710568	3R_4710568_SNP [dm3] 3R_8884846_SNP [dm6]	T	G	5.122e^-5	0.732	INTRON pyd
X	6079666	X_6079666_SNP [dm3] X_6185633_SNP [dm6]	G	A	5.142e^-5	0.732	INTRON Ca-alpha1T
3L	15007697	3L_15007697_SNP [dm3] 3L_15014597_SNP [dm6]	A	T	5.234e^-5	0.732	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3L	15007737	3L_15007737_SNP [dm3] 3L_15014637_SNP [dm6]	A	T	5.234e^-5	0.732	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3L	10347606	3L_10347606_SNP [dm3] 3L_10354506_SNP [dm6]	C	G	5.246e^-5	0.732	INTRON CR44327	TF binding site BDTNP1_TFBS_twi
3L	3662371	3L_3662371_SNP [dm3] 3L_3662371_SNP [dm6]	T	C	5.380e^-5	0.732	INTERGENIC
2L	10549999	2L_10549999_SNP [dm3] 2L_10549999_SNP [dm6]	A	G	5.402e^-5	0.732	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	10791540	2L_10791540_SNP [dm3] 2L_10791540_SNP [dm6]	A	C	5.402e^-5	0.732	DOWNSTREAM CG31870 INTRON CG31869
2L	10791547	2L_10791547_SNP [dm3] 2L_10791547_SNP [dm6]	G	A	5.402e^-5	0.732	DOWNSTREAM CG31870 INTRON CG31869
2L	17251794	2L_17251794_INS [dm3] 2L_17251794_INS [dm6]	A	ATA	5.402e^-5	0.732	INTRON beat-IIIc
2L	17284879	2L_17284879_SNP [dm3] 2L_17284879_SNP [dm6]	G	A	5.402e^-5	0.732	INTERGENIC
2L	9532264	2L_9532264_SNP [dm3] 2L_9532264_SNP [dm6]	C	A	5.402e^-5	0.732	INTRON Oatp30B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10534735	3L_10534735_SNP [dm3] 3L_10541635_SNP [dm6]	T	C	5.402e^-5	0.732	INTRON A2bp1
3L	16061975	3L_16061975_SNP [dm3] 3L_16068875_SNP [dm6]	A	T	5.402e^-5	0.732	NON_SYNONYMOUS_CODING Mbs INTRON Mbs	TF binding site mE1_TFBS_cad
3L	19571965	3L_19571965_SNP [dm3] 3L_19578865_SNP [dm6]	G	A	5.402e^-5	0.732	INTRON Shal
3L	19572077	3L_19572077_SNP [dm3] 3L_19578977_SNP [dm6]	C	A	5.402e^-5	0.732	INTRON Shal
3L	19572079	3L_19572079_INS [dm3] 3L_19578979_INS [dm6]	C	CCGCCCCACACCC...	5.402e^-5	0.732	INTRON Shal
3L	4955787	3L_4955787_SNP [dm3] 3L_4955787_SNP [dm6]	C	A	5.402e^-5	0.732	INTRON Con
3L	9504930	3L_9504930_SNP [dm3] 3L_9511830_SNP [dm6]	A	C	5.402e^-5	0.732	UPSTREAM RpS9 DOWNSTREAM CG33703 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA
3L	9504941	3L_9504941_SNP [dm3] 3L_9511841_SNP [dm6]	G	A	5.402e^-5	0.732	UPSTREAM RpS9 DOWNSTREAM CG33703 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA
2L	9212228	2L_9212228_SNP [dm3] 2L_9212228_SNP [dm6]	A	C	5.507e^-5	0.732	INTRON tai
3L	12586052	3L_12586052_SNP [dm3] 3L_12592952_SNP [dm6]	C	G	5.508e^-5	0.732	INTRON ara	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13310991	3L_13310991_SNP [dm3] 3L_13317891_SNP [dm6]	A	G	5.626e^-5	0.732	INTERGENIC
2R	13938989	2R_13938989_SNP [dm3] 2R_18051484_SNP [dm6]	T	C	5.638e^-5	0.732	INTRON Muc55B
2R	17712441	2R_17712441_SNP [dm3] 2R_21824936_SNP [dm6]	T	A	5.659e^-5	0.732	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	7184091	3R_7184091_DEL [dm3] 3R_11358369_DEL [dm6]	AA	A	5.690e^-5	0.732	INTRON pros
3L	17285101	3L_17285101_SNP [dm3] 3L_17292001_SNP [dm6]	C	A	5.804e^-5	0.732	INTERGENIC
2L	9498310	2L_9498310_SNP [dm3] 2L_9498310_SNP [dm6]	A	G	5.922e^-5	0.732	INTRON CG33298	TF binding site BDTNP1_TFBS_twi
2R	13776108	2R_13776108_SNP [dm3] 2R_17888603_SNP [dm6]	T	C	5.926e^-5	0.732	SYNONYMOUS_CODING PPO1 INTRON Elk	TF binding site mE1_TFBS_cad
X	6888617	X_6888617_INS [dm3] X_6994584_INS [dm6]	C	CTCACCA	6.073e^-5	0.732	UPSTREAM Inx7 INTRON Inx7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
3L	949865	3L_949865_SNP [dm3] 3L_949865_SNP [dm6]	T	G	6.082e^-5	0.732	INTRON Glut1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	19934001	3L_19934001_SNP [dm3] 3L_19940901_SNP [dm6]	T	G	6.084e^-5	0.732	INTRON Ac76E
X	5702660	X_5702660_SNP [dm3] X_5808627_SNP [dm6]	G	C	6.165e^-5	0.732	UPSTREAM Prosbeta2R1 INTERGENIC
3L	14378728	3L_14378728_SNP [dm3] 3L_14385628_SNP [dm6]	A	T	6.186e^-5	0.732	INTERGENIC
2L	6976881	2L_6976881_SNP [dm3] 2L_6976881_SNP [dm6]	A	G	6.242e^-5	0.732	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	8435004	2L_8435004_SNP [dm3] 2L_8435004_SNP [dm6]	G	A	6.246e^-5	0.732	SYNONYMOUS_CODING D12	TF binding site mE1_TFBS_sens
X	2929003	X_2929003_SNP [dm3] X_3034970_SNP [dm6]	A	G	6.268e^-5	0.732	INTRON kirre
3L	3714180	3L_3714180_SNP [dm3] 3L_3714180_SNP [dm6]	T	C	6.327e^-5	0.732	SYNONYMOUS_CODING CG43089 DOWNSTREAM CG32264
3R	3106158	3R_3106158_SNP [dm3] 3R_7280436_SNP [dm6]	G	T	6.331e^-5	0.732	INTRON rn
3R	25252086	3R_25252086_SNP [dm3] 3R_29426364_SNP [dm6]	A	C	6.379e^-5	0.732	INTRON Ptp99A	TF binding site BDTNP1_TFBS_dl
3L	7877495	3L_7877495_SNP [dm3] 3L_7884395_SNP [dm6]	A	G	6.400e^-5	0.732	INTRON CG32365
2L	17853424	2L_17853424_SNP [dm3] 2L_17853424_SNP [dm6]	G	C	6.467e^-5	0.732	INTRON CadN2
3L	1547922	3L_1547922_SNP [dm3] 3L_1547922_SNP [dm6]	C	G	6.481e^-5	0.732	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	3952313	X_3952313_SNP [dm3] X_4058280_SNP [dm6]	A	G	6.568e^-5	0.732	INTERGENIC
3L	19925814	3L_19925814_SNP [dm3] 3L_19932714_SNP [dm6]	A	G	6.601e^-5	0.732	UTR_3_PRIME RhoGDI
X	6473105	X_6473105_SNP [dm3] X_6579072_SNP [dm6]	C	A	6.695e^-5	0.732	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	6473229	X_6473229_SNP [dm3] X_6579196_SNP [dm6]	T	C	6.695e^-5	0.732	SYNONYMOUS_CODING CG34417 INTRON CG34417
X	6473283	X_6473283_SNP [dm3] X_6579250_SNP [dm6]	G	C	6.695e^-5	0.732	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	6442755	2R_6442755_SNP [dm3] 2R_10555250_SNP [dm6]	A	G	6.747e^-5	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	9195029	2L_9195029_SNP [dm3] 2L_9195029_SNP [dm6]	T	G	6.772e^-5	0.732	INTRON tai
3L	13010353	3L_13010353_SNP [dm3] 3L_13017253_SNP [dm6]	G	A	6.840e^-5	0.732	SYNONYMOUS_CODING mRpL20 DOWNSTREAM CG11267	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6392352	2R_6392352_SNP [dm3] 2R_10504847_SNP [dm6]	G	T	6.923e^-5	0.732	DOWNSTREAM lola INTRON lola	TF binding site mE1_TFBS_HSA
2R	20406739	2R_20406739_SNP [dm3] 2R_24519216_SNP [dm6]	T	C	6.957e^-5	0.732	UPSTREAM Ir60d DOWNSTREAM Ir60c INTERGENIC
2L	13237369	2L_13237369_SNP [dm3] 2L_13237369_SNP [dm6]	A	C	7.012e^-5	0.732	INTRON CG5867
3L	10350461	3L_10350461_SNP [dm3] 3L_10357361_SNP [dm6]	C	T	7.025e^-5	0.732	INTRON CR44327	TF binding site mE1_TFBS_Trl
3L	9812701	3L_9812701_SNP [dm3] 3L_9819601_SNP [dm6]	C	T	7.100e^-5	0.732	INTRON CG43897
2L	10516172	2L_10516172_SNP [dm3] 2L_10516172_SNP [dm6]	T	G	7.133e^-5	0.732	INTRON Fatp & 1 other	TF binding site BDTNP1_TFBS_dl
2L	10516194	2L_10516194_SNP [dm3] 2L_10516194_SNP [dm6]	T	G	7.133e^-5	0.732	INTRON Fatp & 1 other	TF binding site BDTNP1_TFBS_dl
2L	10521814	2L_10521814_SNP [dm3] 2L_10521814_SNP [dm6]	T	A	7.133e^-5	0.732	INTERGENIC
2L	10522061	2L_10522061_SNP [dm3] 2L_10522061_SNP [dm6]	G	A	7.133e^-5	0.732	INTERGENIC
2L	10522078	2L_10522078_SNP [dm3] 2L_10522078_SNP [dm6]	C	A	7.133e^-5	0.732	INTERGENIC
2R	11221317	2R_11221317_SNP [dm3] 2R_15333812_SNP [dm6]	G	A	7.191e^-5	0.732	SYNONYMOUS_CODING Hr51	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9735810	3L_9735810_SNP [dm3] 3L_9742710_SNP [dm6]	C	A	7.315e^-5	0.732	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4955798	3L_4955798_SNP [dm3] 3L_4955798_SNP [dm6]	C	T	7.323e^-5	0.732	INTRON Con
3L	4955800	3L_4955800_SNP [dm3] 3L_4955800_SNP [dm6]	C	A	7.323e^-5	0.732	INTRON Con
2L	12580166	2L_12580166_SNP [dm3] 2L_12580166_SNP [dm6]	G	A	7.353e^-5	0.732	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	6964479	2R_6964479_INS [dm3] 2R_11076974_INS [dm6]	G	GTTG	7.405e^-5	0.732	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10958737	2R_10958737_SNP [dm3] 2R_15071232_SNP [dm6]	C	T	7.450e^-5	0.732	INTERGENIC
3L	11454945	3L_11454945_SNP [dm3] 3L_11461845_SNP [dm6]	T	C	7.450e^-5	0.732	INTERGENIC
2R	6018885	2R_6018885_SNP [dm3] 2R_10131380_SNP [dm6]	T	A	7.481e^-5	0.732	INTRON gem	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	11178976	2R_11178976_SNP [dm3] 2R_15291471_SNP [dm6]	T	A	7.545e^-5	0.732	UPSTREAM Trpm INTRON Trpm
2L	21816764	2L_21816764_SNP [dm3] 2L_21816764_SNP [dm6]	C	G	7.662e^-5	0.732	INTERGENIC
3L	8907900	3L_8907900_SNP [dm3] 3L_8914800_SNP [dm6]	T	G	7.694e^-5	0.732	UPSTREAM CR43970 INTRON Tsp66E
X	15815600	X_15815600_DEL [dm3] X_15921567_DEL [dm6]	TT	T	7.694e^-5	0.732	UPSTREAM CG8916 DOWNSTREAM CG8909 INTERGENIC
2R	11571464	2R_11571464_SNP [dm3] 2R_15683959_SNP [dm6]	T	C	7.708e^-5	0.732	SYNONYMOUS_CODING Ranbp11 EXON CR43429	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14951931	3L_14951931_SNP [dm3] 3L_14958831_SNP [dm6]	C	T	7.708e^-5	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	14952259	3L_14952259_SNP [dm3] 3L_14959159_SNP [dm6]	G	A	7.708e^-5	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	14952418	3L_14952418_SNP [dm3] 3L_14959318_SNP [dm6]	G	A	7.708e^-5	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11179042	2R_11179042_SNP [dm3] 2R_15291537_SNP [dm6]	C	A	7.925e^-5	0.732	UPSTREAM Trpm INTRON Trpm
3R	13855922	3R_13855922_SNP [dm3] 3R_18030200_SNP [dm6]	C	T	8.089e^-5	0.732	INTERGENIC
2L	1447979	2L_1447979_SNP [dm3] 2L_1447979_SNP [dm6]	G	A	8.150e^-5	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	17615078	2R_17615078_SNP [dm3] 2R_21727573_SNP [dm6]	C	A	8.249e^-5	0.732	EXON CR44750	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10093952	3L_10093952_SNP [dm3] 3L_10100852_SNP [dm6]	G	A	8.262e^-5	0.732	SYNONYMOUS_CODING CG42826 INTRON dpr6
2R	15549814	2R_15549814_SNP [dm3] 2R_19662309_SNP [dm6]	G	A	8.293e^-5	0.732	UPSTREAM mir-4 & 5 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	15549896	2R_15549896_SNP [dm3] 2R_19662391_SNP [dm6]	T	G	8.293e^-5	0.732	UPSTREAM CG11018 & 4 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	15549909	2R_15549909_SNP [dm3] 2R_19662404_SNP [dm6]	G	C	8.293e^-5	0.732	UPSTREAM CG11018 & 4 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	15454382	3L_15454382_SNP [dm3] 3L_15461282_SNP [dm6]	T	G	8.421e^-5	0.732	INTERGENIC
2L	10516548	2L_10516548_SNP [dm3] 2L_10516548_SNP [dm6]	T	C	8.459e^-5	0.732	SYNONYMOUS_CODING Fatp UTR_3_PRIME CG45083 UPSTREAM Lrr47	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	15549851	2R_15549851_SNP [dm3] 2R_19662346_SNP [dm6]	C	T	8.491e^-5	0.732	UPSTREAM mir-4 & 5 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	16406776	2R_16406776_SNP [dm3] 2R_20519271_SNP [dm6]	C	G	8.520e^-5	0.732	INTERGENIC
2R	16406778	2R_16406778_SNP [dm3] 2R_20519273_SNP [dm6]	G	A	8.520e^-5	0.732	INTERGENIC
X	15511106	X_15511106_SNP [dm3] X_15617073_SNP [dm6]	G	A	8.542e^-5	0.732	INTRON sog
3L	8599412	3L_8599412_SNP [dm3] 3L_8606312_SNP [dm6]	G	A	8.682e^-5	0.732	INTRON CG6282
3L	1547915	3L_1547915_SNP [dm3] 3L_1547915_SNP [dm6]	C	T	8.689e^-5	0.732	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1547924	3L_1547924_SNP [dm3] 3L_1547924_SNP [dm6]	T	A	8.689e^-5	0.732	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	17427533	X_17427533_SNP [dm3] X_17533500_SNP [dm6]	T	C	8.785e^-5	0.732	SYNONYMOUS_CODING CG43658	TF binding site mE1_TFBS_chinmo
X	17946412	X_17946412_SNP [dm3] X_18052379_SNP [dm6]	A	G	8.795e^-5	0.732	INTRON Sh
X	4511903	X_4511903_INS [dm3] X_4617870_INS [dm6]	A	AA	8.856e^-5	0.732	UTR_5_PRIME peb	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	4511936	X_4511936_SNP [dm3] X_4617903_SNP [dm6]	A	T	8.856e^-5	0.732	UTR_5_PRIME peb	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12659933	3L_12659933_SNP [dm3] 3L_12666833_SNP [dm6]	T	A	8.898e^-5	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10516303	2L_10516303_SNP [dm3] 2L_10516303_SNP [dm6]	A	C	8.958e^-5	0.732	INTRON Fatp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	10516340	2L_10516340_SNP [dm3] 2L_10516340_SNP [dm6]	T	C	8.958e^-5	0.732	UPSTREAM Lrr47 INTRON Fatp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	3714044	3L_3714044_SNP [dm3] 3L_3714044_SNP [dm6]	G	T	9.040e^-5	0.732	UTR_5_PRIME CG43089 DOWNSTREAM CG32264
3R	7184088	3R_7184088_SNP [dm3] 3R_11358366_SNP [dm6]	A	G	9.054e^-5	0.732	INTRON pros
2L	13271093	2L_13271093_SNP [dm3] 2L_13271093_SNP [dm6]	T	A	9.097e^-5	0.732	INTRON CG44085
X	14685760	X_14685760_SNP [dm3] X_14791727_SNP [dm6]	C	T	9.147e^-5	0.732	SYNONYMOUS_CODING rut INTRON rut	TF binding site mE1_TFBS_chinmo
2L	6167993	2L_6167993_SNP [dm3] 2L_6167993_SNP [dm6]	G	A	9.319e^-5	0.732	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15268923	X_15268923_SNP [dm3] X_15374890_SNP [dm6]	G	C	9.338e^-5	0.732	INTRON acj6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15268932	X_15268932_SNP [dm3] X_15374899_SNP [dm6]	T	A	9.338e^-5	0.732	INTRON acj6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4767191	3R_4767191_SNP [dm3] 3R_8941469_SNP [dm6]	G	T	9.434e^-5	0.732	SYNONYMOUS_CODING skap	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19925760	3L_19925760_SNP [dm3] 3L_19932660_SNP [dm6]	C	A	9.476e^-5	0.732	UTR_3_PRIME RhoGDI
2L	10545469	2L_10545469_SNP [dm3] 2L_10545469_SNP [dm6]	T	C	9.505e^-5	0.732	SYNONYMOUS_CODING Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12592049	2L_12592049_DEL [dm3] 2L_12592049_DEL [dm6]	TCTAA	T	9.505e^-5	0.732	INTRON nub
2L	12592062	2L_12592062_SNP [dm3] 2L_12592062_SNP [dm6]	T	A	9.505e^-5	0.732	INTRON nub
2L	12592078	2L_12592078_SNP [dm3] 2L_12592078_SNP [dm6]	T	A	9.505e^-5	0.732	INTRON nub
X	6279531	X_6279531_SNP [dm3] X_6385498_SNP [dm6]	C	A	9.530e^-5	0.732	DOWNSTREAM CG33664 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	13403711	3L_13403711_SNP [dm3] 3L_13410611_SNP [dm6]	T	C	9.568e^-5	0.732	DOWNSTREAM CG10222 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1
X	12899320	X_12899320_SNP [dm3] X_13005287_SNP [dm6]	C	G	9.569e^-5	0.732	UPSTREAM CG15719 INTRON rad
3L	15007631	3L_15007631_SNP [dm3] 3L_15014531_SNP [dm6]	A	G	9.607e^-5	0.732	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3L	13789465	3L_13789465_INS [dm3] 3L_13796365_INS [dm6]	G	GG	9.744e^-5	0.732	INTRON bru-3
3R	11060146	3R_11060146_SNP [dm3] 3R_15234424_SNP [dm6]	T	G	9.750e^-5	0.732	SYNONYMOUS_CODING tefu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10547304	2L_10547304_SNP [dm3] 2L_10547304_SNP [dm6]	G	T	9.772e^-5	0.732	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3593275	2L_3593275_SNP [dm3] 2L_3593275_SNP [dm6]	A	T	9.772e^-5	0.732	INTERGENIC
3L	10589910	3L_10589910_SNP [dm3] 3L_10596810_SNP [dm6]	T	C	9.773e^-5	0.732	INTERGENIC
2L	3858809	2L_3858809_SNP [dm3] 2L_3858809_SNP [dm6]	C	T	1.002e^-4	0.732	INTERGENIC
3R	3080324	3R_3080324_SNP [dm3] 3R_7254602_SNP [dm6]	T	A	1.006e^-4	0.732	INTRON Gld
2L	3727473	2L_3727473_SNP [dm3] 2L_3727473_SNP [dm6]	C	G	1.015e^-4	0.732	UTR_3_PRIME Shaw
2L	8504633	2L_8504633_SNP [dm3] 2L_8504633_SNP [dm6]	C	A	1.016e^-4	0.732	INTRON Dh31
X	17427545	X_17427545_SNP [dm3] X_17533512_SNP [dm6]	A	G	1.029e^-4	0.732	SYNONYMOUS_CODING CG43658	TF binding site mE1_TFBS_chinmo
X	5702663	X_5702663_DEL [dm3] X_5808630_DEL [dm6]	GCATTGGGTGG...	G	1.034e^-4	0.732	UPSTREAM Prosbeta2R1 INTERGENIC
3L	10547910	3L_10547910_SNP [dm3] 3L_10554810_SNP [dm6]	T	C	1.043e^-4	0.732	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	6088609	2R_6088609_SNP [dm3] 2R_10201104_SNP [dm6]	T	A	1.045e^-4	0.732	INTERGENIC
2L	12135457	2L_12135457_DEL [dm3] 2L_12135457_DEL [dm6]	CACTTAGG	T	1.046e^-4	0.732	INTERGENIC
2R	16998322	2R_16998322_SNP [dm3] 2R_21110817_SNP [dm6]	G	A	1.047e^-4	0.732	INTRON ktub
3L	13359869	3L_13359869_SNP [dm3] 3L_13366769_SNP [dm6]	A	G	1.048e^-4	0.732	INTERGENIC
X	5700063	X_5700063_DEL [dm3] X_5806030_DEL [dm6]	CTTCCC	C	1.057e^-4	0.732	DOWNSTREAM Cpr5C INTERGENIC	TF binding site mE1_TFBS_chinmo
X	5700192	X_5700192_SNP [dm3] X_5806159_SNP [dm6]	G	A	1.057e^-4	0.732	DOWNSTREAM Cpr5C INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	11455243	3L_11455243_SNP [dm3] 3L_11462143_SNP [dm6]	A	C	1.058e^-4	0.732	INTERGENIC
3R	3997345	3R_3997345_SNP [dm3] 3R_8171623_SNP [dm6]	C	T	1.072e^-4	0.732	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14947232	3L_14947232_SNP [dm3] 3L_14954132_SNP [dm6]	C	T	1.073e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9212905	2L_9212905_SNP [dm3] 2L_9212905_SNP [dm6]	T	C	1.077e^-4	0.732	INTRON tai
3L	20252471	3L_20252471_SNP [dm3] 3L_20259371_SNP [dm6]	A	G	1.080e^-4	0.732	UPSTREAM rdgC INTRON rdgC
3L	20252473	3L_20252473_SNP [dm3] 3L_20259373_SNP [dm6]	T	A	1.080e^-4	0.732	UPSTREAM rdgC INTRON rdgC
3L	20252634	3L_20252634_SNP [dm3] 3L_20259534_SNP [dm6]	C	T	1.080e^-4	0.732	UPSTREAM rdgC INTRON rdgC
3L	8241170	3L_8241170_INS [dm3] 3L_8248070_INS [dm6]	A	AAT	1.084e^-4	0.732	INTRON Dscam4
X	681220	X_681220_SNP [dm3] X_787187_SNP [dm6]	C	T	1.113e^-4	0.732	SYNONYMOUS_CODING tw DOWNSTREAM CG13360
2R	14499104	2R_14499104_SNP [dm3] 2R_18611599_SNP [dm6]	C	T	1.115e^-4	0.732	UTR_5_PRIME GEFmeso DOWNSTREAM CG42697	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	8504639	2L_8504639_DEL [dm3] 2L_8504639_DEL [dm6]	TACCGTCTGCATCTCCT...	T	1.121e^-4	0.732	INTRON Dh31
2L	12384592	2L_12384592_SNP [dm3] 2L_12384592_SNP [dm6]	A	C	1.124e^-4	0.732	INTRON bru-2
2L	3955232	2L_3955232_SNP [dm3] 2L_3955232_SNP [dm6]	A	T	1.128e^-4	0.732	INTRON fred
2R	5389333	2R_5389333_SNP [dm3] 2R_9501828_SNP [dm6]	C	T	1.129e^-4	0.732	INTRON Wnt2	TF binding site mE1_TFBS_cad
2R	8931395	2R_8931395_SNP [dm3] 2R_13043890_SNP [dm6]	C	T	1.143e^-4	0.732	DOWNSTREAM CG13323 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	9594034	2L_9594034_SNP [dm3] 2L_9594034_SNP [dm6]	C	T	1.144e^-4	0.732	INTERGENIC	regulatory region REDfly_CRMs
3L	3134641	3L_3134641_SNP [dm3] 3L_3134641_SNP [dm6]	G	C	1.153e^-4	0.732	UPSTREAM CG11537 INTRON CG11537
3R	9955331	3R_9955331_SNP [dm3] 3R_14129609_SNP [dm6]	C	T	1.153e^-4	0.732	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1547913	3L_1547913_SNP [dm3] 3L_1547913_SNP [dm6]	G	A	1.160e^-4	0.732	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	3983639	X_3983639_SNP [dm3] X_4089606_SNP [dm6]	C	T	1.163e^-4	0.732	INTRON CG43689	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	952346	3L_952346_SNP [dm3] 3L_952346_SNP [dm6]	A	G	1.171e^-4	0.732	INTRON Glut1
3L	952351	3L_952351_SNP [dm3] 3L_952351_SNP [dm6]	A	T	1.171e^-4	0.732	INTRON Glut1
3R	5725576	3R_5725576_SNP [dm3] 3R_9899854_SNP [dm6]	A	C	1.174e^-4	0.732	INTRON Glut4EF
3L	14941698	3L_14941698_SNP [dm3] 3L_14948598_SNP [dm6]	T	A	1.185e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	5471205	X_5471205_SNP [dm3] X_5577172_SNP [dm6]	G	T	1.186e^-4	0.732	INTERGENIC
2L	3443884	2L_3443884_SNP [dm3] 2L_3443884_SNP [dm6]	T	G	1.188e^-4	0.732	INTERGENIC
3L	15007431	3L_15007431_SNP [dm3] 3L_15014331_SNP [dm6]	C	T	1.188e^-4	0.732	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	18686500	2R_18686500_SNP [dm3] 2R_22798995_SNP [dm6]	G	A	1.191e^-4	0.732	UPSTREAM blw & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16191007	2L_16191007_SNP [dm3] 2L_16191007_SNP [dm6]	C	A	1.192e^-4	0.732	DOWNSTREAM Ca-alpha1D INTERGENIC
X	6075697	X_6075697_SNP [dm3] X_6181664_SNP [dm6]	T	G	1.194e^-4	0.732	INTRON Ca-alpha1T
X	4511935	X_4511935_SNP [dm3] X_4617902_SNP [dm6]	G	A	1.196e^-4	0.732	UTR_5_PRIME peb	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	19958819	2L_19958819_SNP [dm3] 2L_19958819_SNP [dm6]	C	A	1.207e^-4	0.732	UPSTREAM CoIV DOWNSTREAM sick INTRON CoIV	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11571758	3L_11571758_SNP [dm3] 3L_11578658_SNP [dm6]	A	G	1.215e^-4	0.732	UPSTREAM CG33270 INTERGENIC
3R	10118085	3R_10118085_SNP [dm3] 3R_14292363_SNP [dm6]	G	A	1.221e^-4	0.732	INTRON CG12207
3R	10118088	3R_10118088_SNP [dm3] 3R_14292366_SNP [dm6]	T	A	1.221e^-4	0.732	INTRON CG12207
2R	10607144	2R_10607144_SNP [dm3] 2R_14719639_SNP [dm6]	A	T	1.224e^-4	0.732	INTERGENIC
2R	10607145	2R_10607145_SNP [dm3] 2R_14719640_SNP [dm6]	A	C	1.224e^-4	0.732	INTERGENIC
3R	10578009	3R_10578009_SNP [dm3] 3R_14752287_SNP [dm6]	A	C	1.245e^-4	0.732	NON_SYNONYMOUS_CODING CG7362 INTRON jvl
2R	13944773	2R_13944773_SNP [dm3] 2R_18057268_SNP [dm6]	G	A	1.248e^-4	0.732	UPSTREAM CG10912 DOWNSTREAM CR45314 INTERGENIC	TF binding site mE1_TFBS_cad
3L	11795256	3L_11795256_SNP [dm3] 3L_11802156_SNP [dm6]	T	C	1.256e^-4	0.732	NON_SYNONYMOUS_CODING CG42255 UPSTREAM tRNA:CR32093
3R	10368002	3R_10368002_SNP [dm3] 3R_14542280_SNP [dm6]	T	C	1.260e^-4	0.732	INTRON Pde6
3R	25283936	3R_25283936_DEL [dm3] 3R_29458214_DEL [dm6]	GAA	G	1.262e^-4	0.732	DOWNSTREAM CR44022 INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16164359	2R_16164359_SNP [dm3] 2R_20276854_SNP [dm6]	A	G	1.283e^-4	0.732	SYNONYMOUS_CODING CG9143 DOWNSTREAM CG11788
X	10724323	X_10724323_SNP [dm3] X_10830290_SNP [dm6]	G	A	1.288e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	17804937	3L_17804937_SNP [dm3] 3L_17811837_SNP [dm6]	A	T	1.298e^-4	0.732	INTRON cln3
X	6472849	X_6472849_SNP [dm3] X_6578816_SNP [dm6]	T	A	1.304e^-4	0.732	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25718506	3R_25718506_SNP [dm3] 3R_29892784_SNP [dm6]	T	G	1.322e^-4	0.732	INTRON CG31038
3R	25718508	3R_25718508_DEL [dm3] 3R_29892786_DEL [dm6]	AA	G	1.322e^-4	0.732	INTRON CG31038
X	18282412	X_18282412_SNP [dm3] X_18388379_SNP [dm6]	A	C	1.323e^-4	0.732	INTRON Tsf1	TF binding site mE1_TFBS_chinmo
X	18282555	X_18282555_SNP [dm3] X_18388522_SNP [dm6]	A	T	1.323e^-4	0.732	INTRON Tsf1	TF binding site mE1_TFBS_chinmo
X	18282560	X_18282560_SNP [dm3] X_18388527_SNP [dm6]	C	T	1.323e^-4	0.732	INTRON Tsf1	TF binding site mE1_TFBS_chinmo
X	18282600	X_18282600_INS [dm3] X_18388567_INS [dm6]	T	ATTC	1.323e^-4	0.732	SPLICE_SITE_REGION Tsf1 INTRON Tsf1	TF binding site mE1_TFBS_chinmo
X	18283031	X_18283031_SNP [dm3] X_18388998_SNP [dm6]	A	G	1.323e^-4	0.732	SYNONYMOUS_CODING Tsf1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19571477	3L_19571477_SNP [dm3] 3L_19578377_SNP [dm6]	T	A	1.330e^-4	0.732	INTRON Shal
3L	4632631	3L_4632631_SNP [dm3] 3L_4632631_SNP [dm6]	A	T	1.358e^-4	0.732	INTRON axo
2L	9970013	2L_9970013_SNP [dm3] 2L_9970013_SNP [dm6]	C	T	1.363e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	12837940	X_12837940_SNP [dm3] X_12943907_SNP [dm6]	A	G	1.363e^-4	0.732	INTRON fne
X	12837943	X_12837943_SNP [dm3] X_12943910_SNP [dm6]	A	G	1.363e^-4	0.732	INTRON fne
2L	711163	2L_711163_SNP [dm3] 2L_711163_SNP [dm6]	G	T	1.371e^-4	0.732	INTRON ds & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10607168	2R_10607168_SNP [dm3] 2R_14719663_SNP [dm6]	T	G	1.371e^-4	0.732	INTERGENIC
2R	7041735	2R_7041735_SNP [dm3] 2R_11154230_SNP [dm6]	G	T	1.380e^-4	0.732	UPSTREAM CG13230 INTRON CG13229
3L	3331097	3L_3331097_SNP [dm3] 3L_3331097_SNP [dm6]	T	C	1.401e^-4	0.732	SYNONYMOUS_CODING CG14961	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	4767052	3R_4767052_INS [dm3] 3R_8941330_INS [dm6]	A	AT	1.404e^-4	0.732	INTRON skap	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7974263	3L_7974263_DEL [dm3] 3L_7981163_DEL [dm6]	ACAA	A	1.423e^-4	0.732	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	7974296	3L_7974296_SNP [dm3] 3L_7981196_SNP [dm6]	A	T	1.423e^-4	0.732	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	21017758	3R_21017758_SNP [dm3] 3R_25192036_SNP [dm6]	G	A	1.425e^-4	0.732	NON_SYNONYMOUS_CODING dan UTR_3_PRIME dan INTRON lobo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4715252	3R_4715252_SNP [dm3] 3R_8889530_SNP [dm6]	C	T	1.427e^-4	0.732	INTRON pyd
3L	6897677	3L_6897677_SNP [dm3] 3L_6904577_SNP [dm6]	A	G	1.433e^-4	0.732	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	17845573	2L_17845573_SNP [dm3] 2L_17845573_SNP [dm6]	A	G	1.434e^-4	0.732	INTRON CadN2
2L	19008773	2L_19008773_SNP [dm3] 2L_19008773_SNP [dm6]	T	C	1.434e^-4	0.732	UPSTREAM snoRNA:Me28S-A2113 DOWNSTREAM CG31793 INTRON RpL30	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	12539035	2L_12539035_SNP [dm3] 2L_12539035_SNP [dm6]	A	G	1.441e^-4	0.732	NON_SYNONYMOUS_CODING bun	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	4754206	2L_4754206_SNP [dm3] 2L_4754206_SNP [dm6]	T	G	1.443e^-4	0.732	INTRON CG15630
X	17944150	X_17944150_SNP [dm3] X_18050117_SNP [dm6]	C	A	1.447e^-4	0.732	INTRON Sh
3L	6897698	3L_6897698_SNP [dm3] 3L_6904598_SNP [dm6]	A	C	1.449e^-4	0.732	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7079723	2R_7079723_SNP [dm3] 2R_11192218_SNP [dm6]	G	A	1.453e^-4	0.732	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20612322	2R_20612322_SNP [dm3] 2R_24724799_SNP [dm6]	C	T	1.461e^-4	0.732	INTRON Mid1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7174174	3R_7174174_SNP [dm3] 3R_11348452_SNP [dm6]	A	G	1.470e^-4	0.732	UTR_5_PRIME KP78b UTR_3_PRIME KP78a UPSTREAM KP78b INTRON pros	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	10019837	X_10019837_SNP [dm3] X_10125804_SNP [dm6]	A	C	1.473e^-4	0.732	INTRON CR44894 & 1 other
2L	9203108	2L_9203108_SNP [dm3] 2L_9203108_SNP [dm6]	A	T	1.477e^-4	0.732	INTRON tai	TF binding site mE1_TFBS_Trl
2L	9203110	2L_9203110_INS [dm3] 2L_9203110_INS [dm6]	A	AG	1.477e^-4	0.732	INTRON tai	TF binding site mE1_TFBS_Trl
2L	9203112	2L_9203112_INS [dm3] 2L_9203112_INS [dm6]	G	GCA	1.477e^-4	0.732	INTRON tai	TF binding site mE1_TFBS_Trl
2L	9203234	2L_9203234_SNP [dm3] 2L_9203234_SNP [dm6]	G	A	1.477e^-4	0.732	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	12139443	3R_12139443_SNP [dm3] 3R_16313721_SNP [dm6]	A	G	1.477e^-4	0.732	SYNONYMOUS_CODING Sulf1	TF binding site mE1_TFBS_cad
3R	12139498	3R_12139498_SNP [dm3] 3R_16313776_SNP [dm6]	T	G	1.477e^-4	0.732	SPLICE_SITE_REGION Sulf1 INTRON Sulf1	TF binding site mE1_TFBS_cad
3L	9067660	3L_9067660_SNP [dm3] 3L_9074560_SNP [dm6]	A	G	1.483e^-4	0.732	UPSTREAM Tequila DOWNSTREAM CG4942 INTERGENIC
3R	3832322	3R_3832322_SNP [dm3] 3R_8006600_SNP [dm6]	C	T	1.488e^-4	0.732	SYNONYMOUS_CODING CG2767 DOWNSTREAM CG2698
2L	3448074	2L_3448074_SNP [dm3] 2L_3448074_SNP [dm6]	A	T	1.504e^-4	0.732	DOWNSTREAM CG2772 INTERGENIC
2R	14322119	2R_14322119_SNP [dm3] 2R_18434614_SNP [dm6]	T	C	1.513e^-4	0.732	INTRON CG30118
3L	12169781	3L_12169781_SNP [dm3] 3L_12176681_SNP [dm6]	G	A	1.526e^-4	0.732	UPSTREAM CAH2 INTERGENIC
2R	19743428	2R_19743428_SNP [dm3] 2R_23855905_SNP [dm6]	C	A	1.528e^-4	0.732	DOWNSTREAM wibg INTRON bgcn	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	3252470	2R_3252470_DEL [dm3] 2R_7364965_DEL [dm6]	GG	G	1.528e^-4	0.732	INTRON Dscam1
3R	4056388	3R_4056388_SNP [dm3] 3R_8230666_SNP [dm6]	C	G	1.528e^-4	0.732	EXON CR45551
3R	4091692	3R_4091692_SNP [dm3] 3R_8265970_SNP [dm6]	G	A	1.528e^-4	0.732	SYNONYMOUS_CODING Mcm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	4263302	3R_4263302_SNP [dm3] 3R_8437580_SNP [dm6]	A	T	1.528e^-4	0.732	INTRON CG45263
2L	7400346	2L_7400346_SNP [dm3] 2L_7400346_SNP [dm6]	G	A	1.529e^-4	0.732	UPSTREAM CG5171 DOWNSTREAM CR44079 INTERGENIC
3R	5432834	3R_5432834_SNP [dm3] 3R_9607112_SNP [dm6]	C	G	1.536e^-4	0.732	INTRON CG8312
X	10063633	X_10063633_SNP [dm3] X_10169600_SNP [dm6]	C	G	1.551e^-4	0.732	INTRON CR44894 & 1 other
X	5472084	X_5472084_SNP [dm3] X_5578051_SNP [dm6]	A	G	1.562e^-4	0.732	INTERGENIC
X	5472086	X_5472086_SNP [dm3] X_5578053_SNP [dm6]	C	T	1.562e^-4	0.732	INTERGENIC
X	5472106	X_5472106_SNP [dm3] X_5578073_SNP [dm6]	C	T	1.562e^-4	0.732	INTERGENIC
X	5472112	X_5472112_SNP [dm3] X_5578079_SNP [dm6]	T	A	1.562e^-4	0.732	INTERGENIC
3R	3997350	3R_3997350_MNP [dm3] 3R_8171628_MNP [dm6]	AAC	CTA	1.570e^-4	0.732	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5526461	2L_5526461_SNP [dm3] 2L_5526461_SNP [dm6]	T	C	1.579e^-4	0.732	SYNONYMOUS_CODING Cap-D3 UPSTREAM CG31648 DOWNSTREAM CG6907 EXON CR44793	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	3600445	3R_3600445_SNP [dm3] 3R_7774723_SNP [dm6]	T	C	1.588e^-4	0.732	INTERGENIC
3L	16875915	3L_16875915_SNP [dm3] 3L_16882815_SNP [dm6]	T	A	1.590e^-4	0.732	INTRON Lmpt
2R	18541845	2R_18541845_SNP [dm3] 2R_22654340_SNP [dm6]	G	T	1.591e^-4	0.732	SYNONYMOUS_CODING Cyp6d2 DOWNSTREAM nsr & 1 other	TF binding site mE1_TFBS_cad
2L	12986692	2L_12986692_DEL [dm3] 2L_12986692_DEL [dm6]	TATACA	T	1.600e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5389394	2R_5389394_SNP [dm3] 2R_9501889_SNP [dm6]	G	A	1.610e^-4	0.732	INTRON Wnt2	TF binding site mE1_TFBS_cad
3L	1547925	3L_1547925_SNP [dm3] 3L_1547925_SNP [dm6]	C	T	1.621e^-4	0.732	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	4046135	3R_4046135_SNP [dm3] 3R_8220413_SNP [dm6]	G	T	1.637e^-4	0.732	NON_SYNONYMOUS_CODING CG18249 DOWNSTREAM CG7800	TF binding site mE1_TFBS_sens
3L	3661929	3L_3661929_SNP [dm3] 3L_3661929_SNP [dm6]	A	G	1.640e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	15204914	X_15204914_SNP [dm3] X_15310881_SNP [dm6]	T	C	1.643e^-4	0.732	SYNONYMOUS_CODING gce	TF binding site mE1_TFBS_chinmo
2R	7645561	2R_7645561_SNP [dm3] 2R_11758056_SNP [dm6]	G	A	1.655e^-4	0.732	UTR_5_PRIME ths	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	14618532	3L_14618532_SNP [dm3] 3L_14625432_SNP [dm6]	C	T	1.655e^-4	0.732	INTRON CG9628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	9459218	2L_9459218_SNP [dm3] 2L_9459218_SNP [dm6]	G	A	1.657e^-4	0.732	INTRON numb	TF binding site BDTNP1_TFBS_dl
3L	16220896	3L_16220896_SNP [dm3] 3L_16227796_SNP [dm6]	T	C	1.667e^-4	0.732	SYNONYMOUS_CODING l_3_72Dn	TF binding site mE1_TFBS_sens
X	4281744	X_4281744_SNP [dm3] X_4387711_SNP [dm6]	A	T	1.700e^-4	0.732	EXON CR32773	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13789574	3L_13789574_SNP [dm3] 3L_13796474_SNP [dm6]	A	T	1.703e^-4	0.732	INTRON bru-3
X	5358964	X_5358964_SNP [dm3] X_5464931_SNP [dm6]	A	C	1.720e^-4	0.732	UTR_5_PRIME SPR INTRON SPR
X	5358982	X_5358982_SNP [dm3] X_5464949_SNP [dm6]	T	C	1.720e^-4	0.732	UTR_5_PRIME SPR INTRON SPR
X	5358983	X_5358983_SNP [dm3] X_5464950_SNP [dm6]	T	G	1.720e^-4	0.732	START_GAINED SPR UTR_5_PRIME SPR INTRON SPR
2L	15444809	2L_15444809_DEL [dm3] 2L_15444809_DEL [dm6]	GACG	G	1.731e^-4	0.732	INTERGENIC
X	18282965	X_18282965_SNP [dm3] X_18388932_SNP [dm6]	T	C	1.736e^-4	0.732	SYNONYMOUS_CODING Tsf1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11978637	3R_11978637_SNP [dm3] 3R_16152915_SNP [dm6]	A	G	1.743e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	10570697	2L_10570697_SNP [dm3] 2L_10570697_SNP [dm6]	C	A	1.748e^-4	0.732	INTRON Trim9
X	17952280	X_17952280_SNP [dm3] X_18058247_SNP [dm6]	A	T	1.749e^-4	0.732	INTRON Sh
X	11778593	X_11778593_SNP [dm3] X_11884560_SNP [dm6]	C	T	1.750e^-4	0.732	UTR_5_PRIME CG10353 INTRON CG10353	TF binding site mE1_TFBS_sens
X	11778611	X_11778611_SNP [dm3] X_11884578_SNP [dm6]	T	C	1.750e^-4	0.732	UTR_5_PRIME CG10353 INTRON CG10353	TF binding site mE1_TFBS_sens
X	11778634	X_11778634_SNP [dm3] X_11884601_SNP [dm6]	G	A	1.750e^-4	0.732	INTRON CG10353	TF binding site mE1_TFBS_sens
3R	12742143	3R_12742143_DEL [dm3] 3R_16916421_DEL [dm6]	TA	G	1.763e^-4	0.732	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	10530372	2R_10530372_SNP [dm3] 2R_14642867_SNP [dm6]	T	C	1.765e^-4	0.732	INTERGENIC
2R	4905418	2R_4905418_SNP [dm3] 2R_9017913_SNP [dm6]	A	G	1.771e^-4	0.732	UTR_5_PRIME CG13747 UPSTREAM CG13744
2R	16403066	2R_16403066_SNP [dm3] 2R_20515561_SNP [dm6]	G	A	1.783e^-4	0.732	INTERGENIC
3L	3881108	3L_3881108_SNP [dm3] 3L_3881108_SNP [dm6]	C	T	1.783e^-4	0.732	INTERGENIC
2L	9155693	2L_9155693_SNP [dm3] 2L_9155693_SNP [dm6]	C	T	1.784e^-4	0.732	INTRON CG32982
2L	10196748	2L_10196748_SNP [dm3] 2L_10196748_SNP [dm6]	C	T	1.787e^-4	0.732	INTRON Sur
2L	10547021	2L_10547021_SNP [dm3] 2L_10547021_SNP [dm6]	T	C	1.787e^-4	0.732	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12570332	2L_12570332_SNP [dm3] 2L_12570332_SNP [dm6]	T	G	1.787e^-4	0.732	DOWNSTREAM CR44598 & 1 other INTERGENIC
2L	12591958	2L_12591958_DEL [dm3] 2L_12591958_DEL [dm6]	GTT	AC	1.787e^-4	0.732	INTRON nub
2L	12592102	2L_12592102_SNP [dm3] 2L_12592102_SNP [dm6]	C	G	1.787e^-4	0.732	INTRON nub
2R	12505954	2R_12505954_SNP [dm3] 2R_16618449_SNP [dm6]	A	G	1.801e^-4	0.732	INTRON CG5065
2R	12506009	2R_12506009_SNP [dm3] 2R_16618504_SNP [dm6]	A	C	1.801e^-4	0.732	INTRON CG5065
2R	12506016	2R_12506016_SNP [dm3] 2R_16618511_SNP [dm6]	C	T	1.801e^-4	0.732	INTRON CG5065
3R	4746298	3R_4746298_SNP [dm3] 3R_8920576_SNP [dm6]	A	G	1.804e^-4	0.732	INTRON pyd	TF binding site mE1_TFBS_cad
X	14299461	X_14299461_DEL [dm3] X_14405428_DEL [dm6]	AT	A	1.819e^-4	0.732	INTRON dpr8
2L	9990988	2L_9990988_SNP [dm3] 2L_9990988_SNP [dm6]	C	T	1.826e^-4	0.732	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	20234697	3L_20234697_DEL [dm3] 3L_20241597_DEL [dm6]	TT	T	1.838e^-4	0.732	UTR_5_PRIME Clc & 1 other UPSTREAM Clc & 1 other INTRON CG17233 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12567401	2R_12567401_SNP [dm3] 2R_16679896_SNP [dm6]	C	G	1.846e^-4	0.732	INTRON CG30463
2L	8962294	2L_8962294_SNP [dm3] 2L_8962294_SNP [dm6]	G	T	1.850e^-4	0.732	NON_SYNONYMOUS_CODING CG9525 UPSTREAM CG32985
3R	13688624	3R_13688624_SNP [dm3] 3R_17862902_SNP [dm6]	G	T	1.856e^-4	0.732	INTRON tinc
2R	6018522	2R_6018522_SNP [dm3] 2R_10131017_SNP [dm6]	C	A	1.861e^-4	0.732	INTRON gem	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17251557	X_17251557_SNP [dm3] X_17357524_SNP [dm6]	C	G	1.861e^-4	0.732	INTERGENIC
X	15314246	X_15314246_SNP [dm3] X_15420213_SNP [dm6]	G	T	1.865e^-4	0.732	UTR_5_PRIME Cngl
X	18282791	X_18282791_SNP [dm3] X_18388758_SNP [dm6]	T	C	1.881e^-4	0.732	SYNONYMOUS_CODING Tsf1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10553066	2R_10553066_SNP [dm3] 2R_14665561_SNP [dm6]	C	G	1.884e^-4	0.732	UPSTREAM CG12861 DOWNSTREAM CG12860 INTERGENIC
3R	4721982	3R_4721982_SNP [dm3] 3R_8896260_SNP [dm6]	C	T	1.893e^-4	0.732	INTRON pyd	TF binding site mE1_TFBS_Trl
2R	16856463	2R_16856463_SNP [dm3] 2R_20968958_SNP [dm6]	A	G	1.894e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12506146	2R_12506146_SNP [dm3] 2R_16618641_SNP [dm6]	C	G	1.912e^-4	0.732	INTRON CG5065
2R	12506232	2R_12506232_SNP [dm3] 2R_16618727_SNP [dm6]	A	C	1.912e^-4	0.732	INTRON CG5065
X	7138697	X_7138697_SNP [dm3] X_7244664_SNP [dm6]	T	C	1.919e^-4	0.732	INTRON CR44357	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3080956	3R_3080956_SNP [dm3] 3R_7255234_SNP [dm6]	T	G	1.922e^-4	0.732	INTRON Gld
X	15317525	X_15317525_SNP [dm3] X_15423492_SNP [dm6]	T	A	1.923e^-4	0.732	INTRON Cngl
X	2697108	X_2697108_SNP [dm3] X_2803075_SNP [dm6]	A	C	1.930e^-4	0.732	INTRON kirre
X	15317570	X_15317570_SNP [dm3] X_15423537_SNP [dm6]	C	G	1.933e^-4	0.732	INTRON Cngl
3R	14381343	3R_14381343_SNP [dm3] 3R_18555621_SNP [dm6]	A	G	1.938e^-4	0.732	INTERGENIC
3L	1098386	3L_1098386_SNP [dm3] 3L_1098386_SNP [dm6]	C	A	1.940e^-4	0.732	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14942619	3L_14942619_SNP [dm3] 3L_14949519_SNP [dm6]	T	C	1.944e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14096398	X_14096398_SNP [dm3] X_14202365_SNP [dm6]	A	G	1.944e^-4	0.732	SYNONYMOUS_CODING l_1_G0007	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	3694874	2R_3694874_SNP [dm3] 2R_7807369_SNP [dm6]	C	T	1.951e^-4	0.732	UPSTREAM Nop17l INTRON sax	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	17853205	2L_17853205_SNP [dm3] 2L_17853205_SNP [dm6]	T	C	1.957e^-4	0.732	INTRON CadN2
3L	9128689	3L_9128689_SNP [dm3] 3L_9135589_SNP [dm6]	G	A	1.957e^-4	0.732	SYNONYMOUS_CODING Dhpr DOWNSTREAM Use1	TF binding site BDTNP1_TFBS_dl
3R	26819150	3R_26819150_SNP [dm3] 3R_30993428_SNP [dm6]	G	A	1.972e^-4	0.732	UPSTREAM CG31007 INTRON 5-HT7
3R	4771958	3R_4771958_SNP [dm3] 3R_8946236_SNP [dm6]	G	T	1.975e^-4	0.732	INTERGENIC
3L	7974294	3L_7974294_SNP [dm3] 3L_7981194_SNP [dm6]	G	C	1.978e^-4	0.732	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
X	10063646	X_10063646_SNP [dm3] X_10169613_SNP [dm6]	A	C	1.989e^-4	0.732	INTRON CR44894 & 1 other
3R	5305013	3R_5305013_INS [dm3] 3R_9479291_INS [dm6]	T	TATTAGTTATTT...	1.990e^-4	0.732	INTRON CG16779
2R	16310657	2R_16310657_SNP [dm3] 2R_20423152_SNP [dm6]	A	T	1.994e^-4	0.732	INTERGENIC
2L	8680267	2L_8680267_SNP [dm3] 2L_8680267_SNP [dm6]	A	G	2.010e^-4	0.732	UPSTREAM CG9287 INTERGENIC
2L	7061064	2L_7061064_SNP [dm3] 2L_7061064_SNP [dm6]	T	A	2.018e^-4	0.732	SYNONYMOUS_CODING Mnn1 UPSTREAM CG31907
2R	19532994	2R_19532994_SNP [dm3] 2R_23645471_SNP [dm6]	A	C	2.019e^-4	0.732	UPSTREAM retn INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	665309	3L_665309_SNP [dm3] 3L_665309_SNP [dm6]	C	T	2.024e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_sens
3L	11455128	3L_11455128_SNP [dm3] 3L_11462028_SNP [dm6]	T	C	2.029e^-4	0.732	INTERGENIC
X	5702784	X_5702784_SNP [dm3] X_5808751_SNP [dm6]	T	C	2.030e^-4	0.732	UPSTREAM Prosbeta2R1 INTERGENIC
3L	6827892	3L_6827892_SNP [dm3] 3L_6834792_SNP [dm6]	A	G	2.038e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3534710	3L_3534710_SNP [dm3] 3L_3534710_SNP [dm6]	A	G	2.039e^-4	0.732	INTRON Eip63E
3L	724575	3L_724575_INS [dm3] 3L_724575_INS [dm6]	A	ATA	2.044e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	6191105	2L_6191105_SNP [dm3] 2L_6191105_SNP [dm6]	T	C	2.056e^-4	0.732	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	10547909	3L_10547909_SNP [dm3] 3L_10554809_SNP [dm6]	T	C	2.063e^-4	0.732	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	12937318	3R_12937318_INS [dm3] 3R_17111596_INS [dm6]	A	AA	2.063e^-4	0.732	INTRON cher
2L	4141966	2L_4141966_SNP [dm3] 2L_4141966_SNP [dm6]	G	A	2.064e^-4	0.732	INTERGENIC
2L	4142013	2L_4142013_SNP [dm3] 2L_4142013_SNP [dm6]	A	T	2.064e^-4	0.732	INTERGENIC
2R	6847922	2R_6847922_SNP [dm3] 2R_10960417_SNP [dm6]	G	T	2.064e^-4	0.732	INTERGENIC
3R	4353734	3R_4353734_SNP [dm3] 3R_8528012_SNP [dm6]	A	G	2.064e^-4	0.732	DOWNSTREAM CG11741 INTERGENIC
3R	4699602	3R_4699602_SNP [dm3] 3R_8873880_SNP [dm6]	T	A	2.064e^-4	0.732	INTRON pyd	TF binding site mE1_TFBS_cad
3R	4700151	3R_4700151_DEL [dm3] 3R_8874429_DEL [dm6]	AT	A	2.064e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4700688	3R_4700688_SNP [dm3] 3R_8874966_SNP [dm6]	C	A	2.064e^-4	0.732	INTRON pyd
3R	4709843	3R_4709843_SNP [dm3] 3R_8884121_SNP [dm6]	T	C	2.064e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	4722738	3R_4722738_SNP [dm3] 3R_8897016_SNP [dm6]	T	G	2.064e^-4	0.732	INTRON pyd
3R	4722759	3R_4722759_SNP [dm3] 3R_8897037_SNP [dm6]	G	T	2.064e^-4	0.732	INTRON pyd
3R	4723051	3R_4723051_SNP [dm3] 3R_8897329_SNP [dm6]	G	T	2.064e^-4	0.732	INTRON pyd
3R	4723715	3R_4723715_SNP [dm3] 3R_8897993_SNP [dm6]	C	T	2.064e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4741325	3R_4741325_DEL [dm3] 3R_8915603_DEL [dm6]	AA	A	2.064e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4741426	3R_4741426_INS [dm3] 3R_8915704_INS [dm6]	A	AA	2.064e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4741628	3R_4741628_SNP [dm3] 3R_8915906_SNP [dm6]	A	G	2.064e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_twi
3R	4741652	3R_4741652_SNP [dm3] 3R_8915930_SNP [dm6]	G	A	2.064e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_twi
3R	4741745	3R_4741745_SNP [dm3] 3R_8916023_SNP [dm6]	T	C	2.064e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_twi
3R	4743637	3R_4743637_SNP [dm3] 3R_8917915_SNP [dm6]	T	C	2.064e^-4	0.732	INTRON pyd
3R	4744599	3R_4744599_SNP [dm3] 3R_8918877_SNP [dm6]	C	A	2.064e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	4744665	3R_4744665_SNP [dm3] 3R_8918943_SNP [dm6]	C	G	2.064e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4745231	3R_4745231_SNP [dm3] 3R_8919509_SNP [dm6]	G	A	2.064e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4745313	3R_4745313_SNP [dm3] 3R_8919591_SNP [dm6]	T	C	2.064e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4745645	3R_4745645_SNP [dm3] 3R_8919923_SNP [dm6]	C	T	2.064e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4747351	3R_4747351_SNP [dm3] 3R_8921629_SNP [dm6]	C	G	2.064e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_twi
3R	4769982	3R_4769982_SNP [dm3] 3R_8944260_SNP [dm6]	C	T	2.064e^-4	0.732	SYNONYMOUS_CODING CG11964	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	4773669	3R_4773669_SNP [dm3] 3R_8947947_SNP [dm6]	T	A	2.064e^-4	0.732	INTERGENIC
3R	4773913	3R_4773913_SNP [dm3] 3R_8948191_SNP [dm6]	C	A	2.064e^-4	0.732	INTERGENIC
3R	4776678	3R_4776678_SNP [dm3] 3R_8950956_SNP [dm6]	T	C	2.064e^-4	0.732	UTR_3_PRIME CG11966
3R	4780633	3R_4780633_SNP [dm3] 3R_8954911_SNP [dm6]	C	A	2.064e^-4	0.732	INTRON CG11966	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4782519	3R_4782519_SNP [dm3] 3R_8956797_SNP [dm6]	C	T	2.064e^-4	0.732	INTRON CG11966	TF binding site BDTNP1_TFBS_twi
3R	4782735	3R_4782735_SNP [dm3] 3R_8957013_SNP [dm6]	T	C	2.064e^-4	0.732	INTRON CG11966	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4782934	3R_4782934_SNP [dm3] 3R_8957212_SNP [dm6]	C	A	2.064e^-4	0.732	INTRON CG11966	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4783201	3R_4783201_DEL [dm3] 3R_8957479_DEL [dm6]	GG	G	2.064e^-4	0.732	INTRON CG11966
2R	7642602	2R_7642602_SNP [dm3] 2R_11755097_SNP [dm6]	A	C	2.077e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	3622527	3R_3622527_SNP [dm3] 3R_7796805_SNP [dm6]	G	T	2.093e^-4	0.732	DOWNSTREAM CG18744 & 1 other INTERGENIC
3R	11495013	3R_11495013_SNP [dm3] 3R_15669291_SNP [dm6]	A	T	2.093e^-4	0.732	DOWNSTREAM CR43849 INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14816544	3L_14816544_SNP [dm3] 3L_14823444_SNP [dm6]	T	C	2.097e^-4	0.732	INTRON CG17839
3L	14816566	3L_14816566_SNP [dm3] 3L_14823466_SNP [dm6]	T	C	2.097e^-4	0.732	INTRON CG17839
3L	14816601	3L_14816601_SNP [dm3] 3L_14823501_SNP [dm6]	A	C	2.097e^-4	0.732	INTRON CG17839
3L	14816604	3L_14816604_SNP [dm3] 3L_14823504_SNP [dm6]	A	G	2.097e^-4	0.732	INTRON CG17839
3L	14816626	3L_14816626_SNP [dm3] 3L_14823526_SNP [dm6]	T	C	2.097e^-4	0.732	INTRON CG17839
3R	10057823	3R_10057823_SNP [dm3] 3R_14232101_SNP [dm6]	G	C	2.099e^-4	0.732	INTERGENIC
X	12899387	X_12899387_SNP [dm3] X_13005354_SNP [dm6]	C	G	2.105e^-4	0.732	UPSTREAM CG15719 INTRON rad
2L	7713450	2L_7713450_SNP [dm3] 2L_7713450_SNP [dm6]	G	C	2.106e^-4	0.732	SYNONYMOUS_CODING Ntl DOWNSTREAM CG33296
2R	9444557	2R_9444557_SNP [dm3] 2R_13557052_SNP [dm6]	A	G	2.123e^-4	0.732	SYNONYMOUS_CODING link DOWNSTREAM snoRNA:Psi28S-1153 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	20290254	2R_20290254_SNP [dm3] 2R_24402731_SNP [dm6]	G	A	2.127e^-4	0.732	UPSTREAM Rpn8 & 1 other INTRON Rpn8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5697267	3R_5697267_SNP [dm3] 3R_9871545_SNP [dm6]	A	G	2.140e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	21816672	2L_21816672_SNP [dm3] 2L_21816672_SNP [dm6]	G	A	2.144e^-4	0.732	INTERGENIC
2L	8895726	2L_8895726_INS [dm3] 2L_8895726_INS [dm6]	T	TT	2.161e^-4	0.732	INTERGENIC
2R	7638265	2R_7638265_SNP [dm3] 2R_11750760_SNP [dm6]	G	A	2.174e^-4	0.732	INTERGENIC
2R	7638300	2R_7638300_SNP [dm3] 2R_11750795_SNP [dm6]	A	T	2.174e^-4	0.732	INTERGENIC
2R	7642603	2R_7642603_SNP [dm3] 2R_11755098_SNP [dm6]	T	C	2.174e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7657388	2R_7657388_SNP [dm3] 2R_11769883_SNP [dm6]	G	A	2.174e^-4	0.732	DOWNSTREAM CG13193 INTRON ths	TF binding site mE1_TFBS_cad
2R	7662443	2R_7662443_SNP [dm3] 2R_11774938_SNP [dm6]	C	G	2.182e^-4	0.732	INTRON ths
2L	6976809	2L_6976809_SNP [dm3] 2L_6976809_SNP [dm6]	T	G	2.183e^-4	0.732	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	9128676	3L_9128676_SNP [dm3] 3L_9135576_SNP [dm6]	C	A	2.183e^-4	0.732	NON_SYNONYMOUS_CODING Dhpr DOWNSTREAM Use1	TF binding site BDTNP1_TFBS_dl
2R	18043909	2R_18043909_SNP [dm3] 2R_22156404_SNP [dm6]	T	C	2.186e^-4	0.732	INTRON a	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	25643682	3R_25643682_SNP [dm3] 3R_29817960_SNP [dm6]	C	T	2.187e^-4	0.732	UPSTREAM CG7829 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15404393	2R_15404393_SNP [dm3] 2R_19516888_SNP [dm6]	A	C	2.189e^-4	0.732	DOWNSTREAM sm INTERGENIC
3L	12114735	3L_12114735_SNP [dm3] 3L_12121635_SNP [dm6]	G	T	2.199e^-4	0.732	UTR_3_PRIME yps DOWNSTREAM yps & 1 other
X	15306567	X_15306567_SNP [dm3] X_15412534_SNP [dm6]	G	T	2.200e^-4	0.732	INTRON Cngl
2L	1950233	2L_1950233_SNP [dm3] 2L_1950233_SNP [dm6]	T	C	2.203e^-4	0.732	DOWNSTREAM erm INTERGENIC
3L	2182097	3L_2182097_SNP [dm3] 3L_2182097_SNP [dm6]	C	T	2.209e^-4	0.732	INTERGENIC
2L	16269504	2L_16269504_SNP [dm3] 2L_16269504_SNP [dm6]	T	C	2.213e^-4	0.732	INTRON crp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2R	12616607	2R_12616607_SNP [dm3] 2R_16729102_SNP [dm6]	T	C	2.214e^-4	0.732	INTRON CG30463
2L	15434063	2L_15434063_SNP [dm3] 2L_15434063_SNP [dm6]	C	T	2.214e^-4	0.732	SYNONYMOUS_CODING CG4161	TF binding site mE1_TFBS_sens
3L	14994706	3L_14994706_SNP [dm3] 3L_15001606_SNP [dm6]	A	G	2.215e^-4	0.732	UTR_3_PRIME Reck DOWNSTREAM Prosbeta2
3L	12586013	3L_12586013_SNP [dm3] 3L_12592913_SNP [dm6]	T	C	2.216e^-4	0.732	INTRON ara	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12586021	3L_12586021_SNP [dm3] 3L_12592921_SNP [dm6]	T	A	2.216e^-4	0.732	INTRON ara	TF binding site mE1_TFBS_HSA
2L	9593862	2L_9593862_SNP [dm3] 2L_9593862_SNP [dm6]	C	T	2.231e^-4	0.732	INTERGENIC	regulatory region REDfly_CRMs
2R	9519085	2R_9519085_SNP [dm3] 2R_13631580_SNP [dm6]	T	C	2.234e^-4	0.732	INTRON fas
2R	9578865	2R_9578865_SNP [dm3] 2R_13691360_SNP [dm6]	G	T	2.237e^-4	0.732	DOWNSTREAM CG6220 INTRON fas
2L	4280982	2L_4280982_SNP [dm3] 2L_4280982_SNP [dm6]	C	T	2.245e^-4	0.732	INTRON Art2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16552130	2L_16552130_SNP [dm3] 2L_16552130_SNP [dm6]	C	T	2.247e^-4	0.732	INTRON CG42389	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	3622126	3R_3622126_SNP [dm3] 3R_7796404_SNP [dm6]	C	G	2.248e^-4	0.732	NON_SYNONYMOUS_CODING CG2641 DOWNSTREAM CG18744
X	8286907	X_8286907_SNP [dm3] X_8392874_SNP [dm6]	G	C	2.252e^-4	0.732	INTERGENIC
3R	13689398	3R_13689398_SNP [dm3] 3R_17863676_SNP [dm6]	G	C	2.256e^-4	0.732	INTRON tinc
3R	4694183	3R_4694183_SNP [dm3] 3R_8868461_SNP [dm6]	C	T	2.256e^-4	0.732	INTRON pyd
3L	2077298	3L_2077298_SNP [dm3] 3L_2077298_SNP [dm6]	T	C	2.265e^-4	0.732	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_sens
3R	11325808	3R_11325808_SNP [dm3] 3R_15500086_SNP [dm6]	A	G	2.284e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3566660	3L_3566660_SNP [dm3] 3L_3566660_SNP [dm6]	A	G	2.294e^-4	0.732	INTRON Eip63E
2R	2612587	2R_2612587_SNP [dm3] 2R_6725082_SNP [dm6]	C	T	2.304e^-4	0.732	INTRON l_2_01289
2R	2612614	2R_2612614_SNP [dm3] 2R_6725109_SNP [dm6]	C	A	2.304e^-4	0.732	INTRON l_2_01289	TF binding site mE1_TFBS_cad
2L	4234106	2L_4234106_SNP [dm3] 2L_4234106_SNP [dm6]	T	C	2.305e^-4	0.732	INTERGENIC
2R	6137002	2R_6137002_DEL [dm3] 2R_10249497_DEL [dm6]	AA	A	2.331e^-4	0.732	UTR_3_PRIME Syb DOWNSTREAM CG12914 INTRON CG12913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13789535	3L_13789535_SNP [dm3] 3L_13796435_SNP [dm6]	T	G	2.331e^-4	0.732	INTRON bru-3
2L	4210318	2L_4210318_SNP [dm3] 2L_4210318_SNP [dm6]	A	G	2.333e^-4	0.732	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10343761	2R_10343761_SNP [dm3] 2R_14456256_SNP [dm6]	T	C	2.334e^-4	0.732	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10344236	2R_10344236_SNP [dm3] 2R_14456731_SNP [dm6]	A	T	2.334e^-4	0.732	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14440570	3L_14440570_SNP [dm3] 3L_14447470_SNP [dm6]	T	G	2.334e^-4	0.732	INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4041043	X_4041043_SNP [dm3] X_4147010_SNP [dm6]	G	A	2.343e^-4	0.732	INTRON Fas2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7686014	2R_7686014_SNP [dm3] 2R_11798509_SNP [dm6]	T	C	2.347e^-4	0.732	INTRON ths
3L	13789546	3L_13789546_SNP [dm3] 3L_13796446_SNP [dm6]	A	T	2.356e^-4	0.732	INTRON bru-3
3L	5426307	3L_5426307_SNP [dm3] 3L_5433207_SNP [dm6]	G	T	2.357e^-4	0.732	SYNONYMOUS_CODING CG34391
2R	7685699	2R_7685699_SNP [dm3] 2R_11798194_SNP [dm6]	C	T	2.362e^-4	0.732	INTRON ths
2R	19367998	2R_19367998_SNP [dm3] 2R_23480475_SNP [dm6]	A	T	2.362e^-4	0.732	INTRON CG43795
3R	12074882	3R_12074882_SNP [dm3] 3R_16249160_SNP [dm6]	A	G	2.362e^-4	0.732	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
X	20379740	X_20379740_SNP [dm3] X_20508713_SNP [dm6]	T	A	2.362e^-4	0.732	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl
3R	12231354	3R_12231354_SNP [dm3] 3R_16405632_SNP [dm6]	T	C	2.372e^-4	0.732	INTERGENIC
2L	21822307	2L_21822307_SNP [dm3] 2L_21822307_SNP [dm6]	T	C	2.379e^-4	0.732	EXON CR44786
2R	10790841	2R_10790841_SNP [dm3] 2R_14903336_SNP [dm6]	C	T	2.379e^-4	0.732	SYNONYMOUS_CODING CG10249 DOWNSTREAM Cyp317a1
X	20380003	X_20380003_SNP [dm3] X_20508976_SNP [dm6]	G	C	2.387e^-4	0.732	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	19055615	2L_19055615_SNP [dm3] 2L_19055615_SNP [dm6]	C	T	2.395e^-4	0.732	INTRON CG10492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	19072606	2L_19072606_SNP [dm3] 2L_19072606_SNP [dm6]	G	C	2.395e^-4	0.732	INTRON CG17572
3L	13169626	3L_13169626_SNP [dm3] 3L_13176526_SNP [dm6]	A	G	2.407e^-4	0.732	SYNONYMOUS_CODING snky
3L	3875182	3L_3875182_SNP [dm3] 3L_3875182_SNP [dm6]	T	A	2.417e^-4	0.732	INTERGENIC
2L	9593155	2L_9593155_SNP [dm3] 2L_9593155_SNP [dm6]	T	C	2.417e^-4	0.732	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	11455108	3L_11455108_SNP [dm3] 3L_11462008_SNP [dm6]	A	C	2.420e^-4	0.732	INTERGENIC
X	17427523	X_17427523_SNP [dm3] X_17533490_SNP [dm6]	A	C	2.433e^-4	0.732	NON_SYNONYMOUS_CODING CG43658	TF binding site mE1_TFBS_chinmo
2R	11182596	2R_11182596_SNP [dm3] 2R_15295091_SNP [dm6]	T	A	2.438e^-4	0.732	UPSTREAM CR44241 INTRON Trpm
2R	13493817	2R_13493817_SNP [dm3] 2R_17606312_SNP [dm6]	A	T	2.439e^-4	0.732	NON_SYNONYMOUS_CODING CG10936
2L	6768261	2L_6768261_SNP [dm3] 2L_6768261_SNP [dm6]	G	T	2.447e^-4	0.732	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1071215	3R_1071215_SNP [dm3] 3R_5245493_SNP [dm6]	A	T	2.448e^-4	0.732	INTRON CG12163
2L	4893801	2L_4893801_INS [dm3] 2L_4893801_INS [dm6]	G	GG	2.451e^-4	0.732	INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4655678	2R_4655678_SNP [dm3] 2R_8768173_SNP [dm6]	C	T	2.452e^-4	0.732	DOWNSTREAM CR44278 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	10728635	X_10728635_SNP [dm3] X_10834602_SNP [dm6]	A	G	2.452e^-4	0.732	SYNONYMOUS_CODING sbr
2R	10553081	2R_10553081_SNP [dm3] 2R_14665576_SNP [dm6]	A	T	2.455e^-4	0.732	UPSTREAM CG12861 DOWNSTREAM CG12860 INTERGENIC
3L	13789524	3L_13789524_SNP [dm3] 3L_13796424_SNP [dm6]	A	T	2.465e^-4	0.732	INTRON bru-3
3L	13789630	3L_13789630_SNP [dm3] 3L_13796530_SNP [dm6]	A	G	2.465e^-4	0.732	INTRON bru-3
3L	13011277	3L_13011277_SNP [dm3] 3L_13018177_SNP [dm6]	A	T	2.467e^-4	0.732	UPSTREAM ste14 & 1 other DOWNSTREAM CR45445 INTERGENIC
2L	12584670	2L_12584670_SNP [dm3] 2L_12584670_SNP [dm6]	T	C	2.474e^-4	0.732	INTERGENIC
3L	2838330	3L_2838330_SNP [dm3] 3L_2838330_SNP [dm6]	C	A	2.474e^-4	0.732	INTRON CG43444
3L	3878583	3L_3878583_SNP [dm3] 3L_3878583_SNP [dm6]	T	G	2.481e^-4	0.732	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	15609602	3L_15609602_SNP [dm3] 3L_15616502_SNP [dm6]	A	G	2.487e^-4	0.732	INTRON comm3
2R	12506227	2R_12506227_SNP [dm3] 2R_16618722_SNP [dm6]	T	A	2.517e^-4	0.732	INTRON CG5065
2R	6755043	2R_6755043_SNP [dm3] 2R_10867538_SNP [dm6]	A	G	2.519e^-4	0.732	INTRON CG30015
3L	14758665	3L_14758665_SNP [dm3] 3L_14765565_SNP [dm6]	T	C	2.519e^-4	0.732	SYNONYMOUS_CODING CG9384	TF binding site mE1_TFBS_cad
X	15770952	X_15770952_SNP [dm3] X_15876919_SNP [dm6]	T	G	2.522e^-4	0.732	UTR_3_PRIME tay
2R	7646083	2R_7646083_SNP [dm3] 2R_11758578_SNP [dm6]	G	T	2.528e^-4	0.732	UTR_5_PRIME ths
3L	16031473	3L_16031473_SNP [dm3] 3L_16038373_SNP [dm6]	C	A	2.530e^-4	0.732	DOWNSTREAM th INTERGENIC
X	5359010	X_5359010_SNP [dm3] X_5464977_SNP [dm6]	G	A	2.532e^-4	0.732	INTRON SPR
2L	19032051	2L_19032051_SNP [dm3] 2L_19032051_SNP [dm6]	T	C	2.538e^-4	0.732	NON_SYNONYMOUS_CODING hk
2L	19032052	2L_19032052_SNP [dm3] 2L_19032052_SNP [dm6]	T	C	2.538e^-4	0.732	SYNONYMOUS_CODING hk
2L	8092566	2L_8092566_SNP [dm3] 2L_8092566_SNP [dm6]	T	A	2.543e^-4	0.732	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4741784	3R_4741784_SNP [dm3] 3R_8916062_SNP [dm6]	A	T	2.552e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_twi
3R	4782710	3R_4782710_DEL [dm3] 3R_8956988_DEL [dm6]	AA	A	2.552e^-4	0.732	INTRON CG11966	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13789558	3L_13789558_SNP [dm3] 3L_13796458_SNP [dm6]	A	G	2.553e^-4	0.732	INTRON bru-3
2R	17937679	2R_17937679_SNP [dm3] 2R_22050174_SNP [dm6]	A	T	2.561e^-4	0.732	INTERGENIC
2L	7416744	2L_7416744_SNP [dm3] 2L_7416744_SNP [dm6]	G	A	2.563e^-4	0.732	INTRON chm	TF binding site BDTNP1_TFBS_dl
2R	19343475	2R_19343475_SNP [dm3] 2R_23455952_SNP [dm6]	C	A	2.574e^-4	0.732	INTRON CG43795
2R	17120424	2R_17120424_SNP [dm3] 2R_21232919_SNP [dm6]	T	G	2.578e^-4	0.732	INTRON ASPP
3R	3080332	3R_3080332_SNP [dm3] 3R_7254610_SNP [dm6]	T	A	2.584e^-4	0.732	INTRON Gld
3L	6827564	3L_6827564_SNP [dm3] 3L_6834464_SNP [dm6]	C	A	2.585e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1810919	3L_1810919_SNP [dm3] 3L_1810919_SNP [dm6]	T	C	2.587e^-4	0.732	INTRON GV1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5472125	X_5472125_SNP [dm3] X_5578092_SNP [dm6]	A	G	2.589e^-4	0.732	INTERGENIC
2L	17838437	2L_17838437_SNP [dm3] 2L_17838437_SNP [dm6]	T	G	2.593e^-4	0.732	INTRON CadN2
2L	10130367	2L_10130367_INS [dm3] 2L_10130367_INS [dm6]	G	GG	2.593e^-4	0.732	INTRON CG44153
2R	19511246	2R_19511246_SNP [dm3] 2R_23623723_SNP [dm6]	C	T	2.606e^-4	0.732	INTERGENIC
2R	17565338	2R_17565338_SNP [dm3] 2R_21677833_SNP [dm6]	A	C	2.615e^-4	0.732	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12130945	3L_12130945_SNP [dm3] 3L_12137845_SNP [dm6]	G	T	2.617e^-4	0.732	NON_SYNONYMOUS_CODING l_3_neo18 DOWNSTREAM Atg12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_sens
3L	12131152	3L_12131152_SNP [dm3] 3L_12138052_SNP [dm6]	G	A	2.617e^-4	0.732	SYNONYMOUS_CODING l_3_neo18 UPSTREAM RhoGAP68F DOWNSTREAM Atg12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_sens
3L	12132931	3L_12132931_SNP [dm3] 3L_12139831_SNP [dm6]	T	C	2.617e^-4	0.732	INTRON RhoGAP68F
3L	2076917	3L_2076917_SNP [dm3] 3L_2076917_SNP [dm6]	T	C	2.645e^-4	0.732	SYNONYMOUS_CODING sls INTRON sls
X	16090098	X_16090098_INS [dm3] X_16196065_INS [dm6]	C	CC	2.653e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9727274	3L_9727274_SNP [dm3] 3L_9734174_SNP [dm6]	A	T	2.654e^-4	0.732	UTR_3_PRIME CG42268 UPSTREAM mir-4986 & 1 other
3R	15435098	3R_15435098_SNP [dm3] 3R_19609376_SNP [dm6]	T	A	2.655e^-4	0.732	UPSTREAM CG17752 DOWNSTREAM CG17751 INTERGENIC
2L	15341435	2L_15341435_SNP [dm3] 2L_15341435_SNP [dm6]	A	G	2.676e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14994717	3L_14994717_SNP [dm3] 3L_15001617_SNP [dm6]	G	T	2.682e^-4	0.732	UTR_3_PRIME Reck DOWNSTREAM Prosbeta2
3L	18837482	3L_18837482_SNP [dm3] 3L_18844382_SNP [dm6]	C	G	2.716e^-4	0.732	INTRON Indy
3R	4040407	3R_4040407_SNP [dm3] 3R_8214685_SNP [dm6]	A	C	2.717e^-4	0.732	INTERGENIC
2L	15339910	2L_15339910_SNP [dm3] 2L_15339910_SNP [dm6]	G	A	2.721e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	19477322	3R_19477322_SNP [dm3] 3R_23651600_SNP [dm6]	T	G	2.721e^-4	0.732	INTRON CG31145
2R	7685156	2R_7685156_SNP [dm3] 2R_11797651_SNP [dm6]	C	T	2.732e^-4	0.732	INTRON ths	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
X	1011859	X_1011859_SNP [dm3] X_1117826_SNP [dm6]	C	G	2.735e^-4	0.732	INTRON CG3655
3R	12419366	3R_12419366_SNP [dm3] 3R_16593644_SNP [dm6]	A	T	2.736e^-4	0.732	UPSTREAM CG14892 INTERGENIC
2L	9175434	2L_9175434_SNP [dm3] 2L_9175434_SNP [dm6]	A	G	2.739e^-4	0.732	UPSTREAM tai INTRON tai
2R	15166248	2R_15166248_SNP [dm3] 2R_19278743_SNP [dm6]	T	C	2.744e^-4	0.732	SYNONYMOUS_CODING rib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13805956	3R_13805956_SNP [dm3] 3R_17980234_SNP [dm6]	T	C	2.745e^-4	0.732	INTRON cpo
3R	4709026	3R_4709026_SNP [dm3] 3R_8883304_SNP [dm6]	T	C	2.755e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	4709095	3R_4709095_SNP [dm3] 3R_8883373_SNP [dm6]	A	C	2.755e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	4709097	3R_4709097_SNP [dm3] 3R_8883375_SNP [dm6]	G	T	2.755e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	4709098	3R_4709098_DEL [dm3] 3R_8883376_DEL [dm6]	TCAATGGATTAACATTTTAT...	T	2.755e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	4718634	3R_4718634_SNP [dm3] 3R_8892912_SNP [dm6]	T	G	2.755e^-4	0.732	INTRON pyd
2L	9593294	2L_9593294_SNP [dm3] 2L_9593294_SNP [dm6]	A	G	2.761e^-4	0.732	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	16281797	2L_16281797_SNP [dm3] 2L_16281797_SNP [dm6]	C	T	2.763e^-4	0.732	INTRON crp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6897690	3L_6897690_SNP [dm3] 3L_6904590_SNP [dm6]	G	A	2.765e^-4	0.732	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16444975	2R_16444975_SNP [dm3] 2R_20557470_SNP [dm6]	T	A	2.766e^-4	0.732	INTRON lms	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3384171	3R_3384171_SNP [dm3] 3R_7558449_SNP [dm6]	G	A	2.776e^-4	0.732	INTERGENIC
2R	6984281	2R_6984281_SNP [dm3] 2R_11096776_SNP [dm6]	G	A	2.780e^-4	0.732	INTRON luna	TF binding site BDTNP1_TFBS_twi
X	6888616	X_6888616_SNP [dm3] X_6994583_SNP [dm6]	A	C	2.780e^-4	0.732	UPSTREAM Inx7 INTRON Inx7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
3R	16285314	3R_16285314_SNP [dm3] 3R_20459592_SNP [dm6]	T	G	2.784e^-4	0.732	INTRON Gfrl
3R	25643693	3R_25643693_SNP [dm3] 3R_29817971_SNP [dm6]	A	G	2.789e^-4	0.732	UPSTREAM CG7829 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12686528	2L_12686528_SNP [dm3] 2L_12686528_SNP [dm6]	A	G	2.795e^-4	0.732	DOWNSTREAM pdm2 INTERGENIC
2R	20290315	2R_20290315_SNP [dm3] 2R_24402792_SNP [dm6]	A	T	2.801e^-4	0.732	UPSTREAM Rpn8 & 1 other INTRON Rpn8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3896095	2R_3896095_SNP [dm3] 2R_8008590_SNP [dm6]	C	A	2.814e^-4	0.732	SYNONYMOUS_CODING Odc2 DOWNSTREAM CG14762	TF binding site mE1_TFBS_cad
2R	3896101	2R_3896101_SNP [dm3] 2R_8008596_SNP [dm6]	C	T	2.814e^-4	0.732	SYNONYMOUS_CODING Odc2 DOWNSTREAM CG14762	TF binding site mE1_TFBS_cad
3L	6956353	3L_6956353_SNP [dm3] 3L_6963253_SNP [dm6]	A	G	2.820e^-4	0.732	INTRON sgl	TF binding site BDTNP1_TFBS_dl
3L	6956354	3L_6956354_SNP [dm3] 3L_6963254_SNP [dm6]	C	A	2.820e^-4	0.732	INTRON sgl	TF binding site BDTNP1_TFBS_dl
X	3927138	X_3927138_SNP [dm3] X_4033105_SNP [dm6]	G	A	2.839e^-4	0.732	INTERGENIC
3R	4759122	3R_4759122_SNP [dm3] 3R_8933400_SNP [dm6]	A	C	2.839e^-4	0.732	DOWNSTREAM CR44020 INTERGENIC
X	12681585	X_12681585_SNP [dm3] X_12787552_SNP [dm6]	G	T	2.840e^-4	0.732	UTR_3_PRIME Pde9	TF binding site BDTNP1_TFBS_dl
3R	4353678	3R_4353678_SNP [dm3] 3R_8527956_SNP [dm6]	A	T	2.848e^-4	0.732	DOWNSTREAM CG11741 INTERGENIC
2L	4513415	2L_4513415_SNP [dm3] 2L_4513415_SNP [dm6]	G	T	2.860e^-4	0.732	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6767256	2R_6767256_SNP [dm3] 2R_10879751_SNP [dm6]	C	G	2.860e^-4	0.732	UPSTREAM Pex6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	6767258	2R_6767258_SNP [dm3] 2R_10879753_SNP [dm6]	A	C	2.860e^-4	0.732	UPSTREAM Pex6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	6768945	2R_6768945_SNP [dm3] 2R_10881440_SNP [dm6]	A	T	2.860e^-4	0.732	SYNONYMOUS_CODING Pex6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6769321	2R_6769321_SNP [dm3] 2R_10881816_SNP [dm6]	A	T	2.860e^-4	0.732	SYNONYMOUS_CODING Pex6	TF binding site mE1_TFBS_sens
2R	6769423	2R_6769423_SNP [dm3] 2R_10881918_SNP [dm6]	G	A	2.860e^-4	0.732	SYNONYMOUS_CODING Pex6	TF binding site mE1_TFBS_sens
2R	6769463	2R_6769463_SNP [dm3] 2R_10881958_SNP [dm6]	A	G	2.860e^-4	0.732	NON_SYNONYMOUS_CODING Pex6	TF binding site mE1_TFBS_sens
2R	6769495	2R_6769495_SNP [dm3] 2R_10881990_SNP [dm6]	A	G	2.860e^-4	0.732	SYNONYMOUS_CODING Pex6	TF binding site mE1_TFBS_sens
2R	7144715	2R_7144715_SNP [dm3] 2R_11257210_SNP [dm6]	C	T	2.860e^-4	0.732	SYNONYMOUS_CODING CG13223
3L	11173530	3L_11173530_SNP [dm3] 3L_11180430_SNP [dm6]	C	T	2.860e^-4	0.732	INTRON GlcAT-P
3L	13789511	3L_13789511_SNP [dm3] 3L_13796411_SNP [dm6]	T	A	2.868e^-4	0.732	INTRON bru-3
2R	16203914	2R_16203914_SNP [dm3] 2R_20316409_SNP [dm6]	G	A	2.869e^-4	0.732	UPSTREAM CG13871 DOWNSTREAM CR44642 INTRON CG13868
2R	16203922	2R_16203922_SNP [dm3] 2R_20316417_SNP [dm6]	A	G	2.869e^-4	0.732	UPSTREAM CG13871 DOWNSTREAM CR44642 INTRON CG13868
3R	2965970	3R_2965970_SNP [dm3] 3R_7140248_SNP [dm6]	A	G	2.877e^-4	0.732	INTRON Fer1	transposable element FlyBase
3R	4781272	3R_4781272_SNP [dm3] 3R_8955550_SNP [dm6]	A	G	2.877e^-4	0.732	INTRON CG11966	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3725021	2L_3725021_SNP [dm3] 2L_3725021_SNP [dm6]	T	C	2.877e^-4	0.732	UTR_3_PRIME Shaw INTRON Shaw
3R	4709061	3R_4709061_SNP [dm3] 3R_8883339_SNP [dm6]	C	T	2.879e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	641085	2L_641085_SNP [dm3] 2L_641085_SNP [dm6]	T	C	2.883e^-4	0.732	SYNONYMOUS_CODING ds	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13043802	3R_13043802_SNP [dm3] 3R_17218080_SNP [dm6]	T	G	2.884e^-4	0.732	INTRON CG31262
3R	13043808	3R_13043808_SNP [dm3] 3R_17218086_SNP [dm6]	G	A	2.884e^-4	0.732	INTRON CG31262
3L	6334420	3L_6334420_SNP [dm3] 3L_6341320_SNP [dm6]	G	A	2.885e^-4	0.732	INTRON CG13300
X	6099732	X_6099732_SNP [dm3] X_6205699_SNP [dm6]	T	C	2.894e^-4	0.732	INTERGENIC
3L	1797115	3L_1797115_SNP [dm3] 3L_1797115_SNP [dm6]	G	A	2.904e^-4	0.732	NON_SYNONYMOUS_CODING Cdc37 UPSTREAM CG12020	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
X	5709644	X_5709644_SNP [dm3] X_5815611_SNP [dm6]	A	G	2.910e^-4	0.732	SYNONYMOUS_CODING CG15766	TF binding site mE1_TFBS_chinmo
3L	9949289	3L_9949289_SNP [dm3] 3L_9956189_SNP [dm6]	T	A	2.913e^-4	0.732	INTRON CG34356
X	14299629	X_14299629_SNP [dm3] X_14405596_SNP [dm6]	A	T	2.920e^-4	0.732	INTRON dpr8
2R	14588427	2R_14588427_SNP [dm3] 2R_18700922_SNP [dm6]	T	C	2.928e^-4	0.732	SYNONYMOUS_CODING Sik3	TF binding site mE1_TFBS_chinmo
3R	1627692	3R_1627692_SNP [dm3] 3R_5801970_SNP [dm6]	G	C	2.928e^-4	0.732	UPSTREAM CG11000 INTERGENIC
3L	9722116	3L_9722116_SNP [dm3] 3L_9729016_SNP [dm6]	C	T	2.933e^-4	0.732	UTR_3_PRIME Naa60 UPSTREAM ATPsyn-b DOWNSTREAM Naa60
3R	4776982	3R_4776982_SNP [dm3] 3R_8951260_SNP [dm6]	C	A	2.936e^-4	0.732	UTR_3_PRIME CG11966
3R	4777004	3R_4777004_SNP [dm3] 3R_8951282_SNP [dm6]	T	A	2.936e^-4	0.732	UTR_3_PRIME CG11966
3R	4445393	3R_4445393_SNP [dm3] 3R_8619671_SNP [dm6]	G	C	2.937e^-4	0.732	INTRON 5-HT2B
X	20379905	X_20379905_SNP [dm3] X_20508878_SNP [dm6]	T	C	2.940e^-4	0.732	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	20379912	X_20379912_SNP [dm3] X_20508885_SNP [dm6]	C	T	2.940e^-4	0.732	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	11575782	3L_11575782_SNP [dm3] 3L_11582682_SNP [dm6]	T	G	2.948e^-4	0.732	SYNONYMOUS_CODING CG32086 UPSTREAM CG33269
3L	4654993	3L_4654993_INS [dm3] 3L_4654993_INS [dm6]	C	CG	2.952e^-4	0.732	INTRON axo
2R	9578857	2R_9578857_SNP [dm3] 2R_13691352_SNP [dm6]	A	G	2.960e^-4	0.732	DOWNSTREAM CG6220 INTRON fas
2R	9578864	2R_9578864_SNP [dm3] 2R_13691359_SNP [dm6]	G	T	2.960e^-4	0.732	DOWNSTREAM CG6220 INTRON fas
3R	11125989	3R_11125989_SNP [dm3] 3R_15300267_SNP [dm6]	T	C	2.961e^-4	0.732	INTRON Tm1
2R	19341504	2R_19341504_SNP [dm3] 2R_23453981_SNP [dm6]	A	G	2.976e^-4	0.732	INTRON CG43795
2R	19341536	2R_19341536_SNP [dm3] 2R_23454013_SNP [dm6]	T	C	2.976e^-4	0.732	INTRON CG43795
3L	18371015	3L_18371015_SNP [dm3] 3L_18377915_SNP [dm6]	A	T	2.976e^-4	0.732	INTERGENIC
2R	6785242	2R_6785242_SNP [dm3] 2R_10897737_SNP [dm6]	G	A	2.977e^-4	0.732	SYNONYMOUS_CODING CG7712 DOWNSTREAM Rpb5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
2R	7645540	2R_7645540_SNP [dm3] 2R_11758035_SNP [dm6]	T	A	2.980e^-4	0.732	START_GAINED ths UTR_5_PRIME ths	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	4049083	3R_4049083_SNP [dm3] 3R_8223361_SNP [dm6]	A	G	3.000e^-4	0.732	INTERGENIC
X	356151	X_356151_SNP [dm3] X_462118_SNP [dm6]	T	C	3.002e^-4	0.732	NON_SYNONYMOUS_CODING ase INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	10731138	2L_10731138_SNP [dm3] 2L_10731138_SNP [dm6]	C	T	3.002e^-4	0.732	SYNONYMOUS_CODING CG17118 DOWNSTREAM CG6443 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12130414	3L_12130414_SNP [dm3] 3L_12137314_SNP [dm6]	T	A	3.026e^-4	0.732	UPSTREAM CG5645 DOWNSTREAM l_3_neo18 INTRON Atg12	TF binding site BDTNP1_TFBS_z
3R	13631115	3R_13631115_SNP [dm3] 3R_17805393_SNP [dm6]	C	T	3.027e^-4	0.732	UPSTREAM CG17802 DOWNSTREAM CG17801 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14967715	3L_14967715_SNP [dm3] 3L_14974615_SNP [dm6]	C	T	3.040e^-4	0.732	UPSTREAM Ocho INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14973742	3L_14973742_SNP [dm3] 3L_14980642_SNP [dm6]	A	G	3.040e^-4	0.732	NON_SYNONYMOUS_CODING CG3349	TF binding site mE1_TFBS_sens
3R	12742184	3R_12742184_SNP [dm3] 3R_16916462_SNP [dm6]	A	T	3.057e^-4	0.732	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	20047365	3L_20047365_SNP [dm3] 3L_20054265_SNP [dm6]	T	G	3.068e^-4	0.732	INTERGENIC
X	11778517	X_11778517_SNP [dm3] X_11884484_SNP [dm6]	G	A	3.068e^-4	0.732	UTR_5_PRIME CG10353 INTRON CG10353
3R	12272825	3R_12272825_SNP [dm3] 3R_16447103_SNP [dm6]	C	T	3.075e^-4	0.732	UTR_3_PRIME Pak3
2L	14063200	2L_14063200_SNP [dm3] 2L_14063200_SNP [dm6]	G	A	3.076e^-4	0.732	INTRON nAChRalpha5
3L	11455090	3L_11455090_SNP [dm3] 3L_11461990_SNP [dm6]	C	T	3.088e^-4	0.732	INTERGENIC
3R	4743843	3R_4743843_SNP [dm3] 3R_8918121_SNP [dm6]	T	A	3.094e^-4	0.732	INTRON pyd
2L	1557733	2L_1557733_SNP [dm3] 2L_1557733_SNP [dm6]	G	A	3.101e^-4	0.732	INTRON haf	TF binding site mE1_TFBS_HSA
3L	3872627	3L_3872627_SNP [dm3] 3L_3872627_SNP [dm6]	A	G	3.102e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx
2R	16117623	2R_16117623_SNP [dm3] 2R_20230118_SNP [dm6]	G	C	3.111e^-4	0.732	DOWNSTREAM tRNA:G3:56EFa INTERGENIC
3R	14506930	3R_14506930_SNP [dm3] 3R_18681208_SNP [dm6]	G	T	3.119e^-4	0.732	UTR_5_PRIME CG7708 DOWNSTREAM CG7706
X	1617556	X_1617556_SNP [dm3] X_1723523_SNP [dm6]	G	T	3.120e^-4	0.732	INTERGENIC
2R	20290052	2R_20290052_INS [dm3] 2R_24402529_INS [dm6]	A	AA	3.127e^-4	0.732	UPSTREAM Rpn8 & 1 other INTRON Rpn8 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	4021905	2L_4021905_SNP [dm3] 2L_4021905_SNP [dm6]	C	T	3.136e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_jumu
2L	1133757	2L_1133757_SNP [dm3] 2L_1133757_SNP [dm6]	C	T	3.154e^-4	0.732	NON_SYNONYMOUS_CODING Iris UPSTREAM CG4577	TF binding site mE1_TFBS_sens
3L	16302932	3L_16302932_SNP [dm3] 3L_16309832_SNP [dm6]	T	C	3.154e^-4	0.732	EXON CR32160
3L	6900862	3L_6900862_SNP [dm3] 3L_6907762_SNP [dm6]	G	A	3.155e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4712234	3R_4712234_SNP [dm3] 3R_8886512_SNP [dm6]	C	A	3.159e^-4	0.732	INTRON pyd
2R	10069684	2R_10069684_SNP [dm3] 2R_14182179_SNP [dm6]	C	T	3.163e^-4	0.732	UTR_3_PRIME cg
2L	6976797	2L_6976797_SNP [dm3] 2L_6976797_SNP [dm6]	T	C	3.175e^-4	0.732	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	16166352	2R_16166352_SNP [dm3] 2R_20278847_SNP [dm6]	A	G	3.181e^-4	0.732	UTR_5_PRIME CG9143 DOWNSTREAM CG9090	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11862666	3R_11862666_SNP [dm3] 3R_16036944_SNP [dm6]	T	C	3.187e^-4	0.732	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17883966	2L_17883966_DEL [dm3] 2L_17883966_DEL [dm6]	TATTTGT	T	3.187e^-4	0.732	INTERGENIC
2R	16404962	2R_16404962_SNP [dm3] 2R_20517457_SNP [dm6]	T	C	3.192e^-4	0.732	INTERGENIC
X	12181760	X_12181760_SNP [dm3] X_12287727_SNP [dm6]	A	G	3.193e^-4	0.732	INTRON Ten-a
X	15306549	X_15306549_SNP [dm3] X_15412516_SNP [dm6]	C	G	3.194e^-4	0.732	INTRON Cngl
3L	6433847	3L_6433847_SNP [dm3] 3L_6440747_SNP [dm6]	A	C	3.195e^-4	0.732	INTRON CG42747
2L	10618008	2L_10618008_SNP [dm3] 2L_10618008_SNP [dm6]	C	T	3.204e^-4	0.732	INTRON Trim9
3R	14042832	3R_14042832_SNP [dm3] 3R_18217110_SNP [dm6]	T	C	3.219e^-4	0.732	SYNONYMOUS_CODING CG14314	TF binding site mE1_TFBS_cad
3R	12752517	3R_12752517_SNP [dm3] 3R_16926795_SNP [dm6]	C	A	3.241e^-4	0.732	DOWNSTREAM Abd-B INTERGENIC
2R	6851898	2R_6851898_SNP [dm3] 2R_10964393_SNP [dm6]	C	T	3.250e^-4	0.732	INTERGENIC
3R	4741278	3R_4741278_INS [dm3] 3R_8915556_INS [dm6]	A	AA	3.257e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10225964	3R_10225964_SNP [dm3] 3R_14400242_SNP [dm6]	G	A	3.262e^-4	0.732	INTRON cv-c	TF binding site mE1_TFBS_Trl
3R	12740333	3R_12740333_SNP [dm3] 3R_16914611_SNP [dm6]	G	T	3.278e^-4	0.732	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9522551	2R_9522551_SNP [dm3] 2R_13635046_SNP [dm6]	T	C	3.280e^-4	0.732	INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8737617	2L_8737617_SNP [dm3] 2L_8737617_SNP [dm6]	G	C	3.281e^-4	0.732	INTRON raw
2L	8737899	2L_8737899_SNP [dm3] 2L_8737899_SNP [dm6]	G	A	3.281e^-4	0.732	INTRON raw
2L	4279567	2L_4279567_SNP [dm3] 2L_4279567_SNP [dm6]	C	T	3.283e^-4	0.732	UPSTREAM Art2 INTRON Art2	TF binding site BDTNP1_TFBS_dl
3L	11795115	3L_11795115_SNP [dm3] 3L_11802015_SNP [dm6]	G	A	3.284e^-4	0.732	UTR_3_PRIME CG42255 UPSTREAM tRNA:CR32093
3L	13011182	3L_13011182_SNP [dm3] 3L_13018082_SNP [dm6]	C	T	3.291e^-4	0.732	UPSTREAM ste14 & 1 other DOWNSTREAM CR45445 INTERGENIC
2L	22041822	2L_22041822_SNP [dm3] 2L_22041822_SNP [dm6]	C	T	3.294e^-4	0.732	INTRON CG31601
3R	9874284	3R_9874284_INS [dm3] 3R_14048562_INS [dm6]	A	AAA	3.299e^-4	0.732	INTERGENIC
2R	19167963	2R_19167963_SNP [dm3] 2R_23280440_SNP [dm6]	G	T	3.306e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_inv
2L	13343525	2L_13343525_SNP [dm3] 2L_13343525_SNP [dm6]	T	G	3.309e^-4	0.732	INTERGENIC
2L	16282327	2L_16282327_SNP [dm3] 2L_16282327_SNP [dm6]	C	G	3.311e^-4	0.732	INTRON crp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13665575	2R_13665575_SNP [dm3] 2R_17778070_SNP [dm6]	A	G	3.311e^-4	0.732	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13666853	2R_13666853_SNP [dm3] 2R_17779348_SNP [dm6]	A	C	3.311e^-4	0.732	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981	TF binding site mE1_TFBS_sens
3L	11128099	3L_11128099_SNP [dm3] 3L_11134999_SNP [dm6]	G	T	3.311e^-4	0.732	START_LOST CG14143 DOWNSTREAM CG42575
3R	10121800	3R_10121800_SNP [dm3] 3R_14296078_SNP [dm6]	T	G	3.313e^-4	0.732	INTRON CG12207
3R	12742048	3R_12742048_SNP [dm3] 3R_16916326_SNP [dm6]	T	A	3.315e^-4	0.732	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	6718958	3L_6718958_SNP [dm3] 3L_6725858_SNP [dm6]	T	C	3.326e^-4	0.732	UPSTREAM CR44523 INTERGENIC
2R	13244176	2R_13244176_SNP [dm3] 2R_17356671_SNP [dm6]	A	C	3.331e^-4	0.732	INTRON mbl
3R	15461347	3R_15461347_SNP [dm3] 3R_19635625_SNP [dm6]	C	T	3.333e^-4	0.732	INTRON subdued & 1 other
3L	1810757	3L_1810757_SNP [dm3] 3L_1810757_SNP [dm6]	T	C	3.335e^-4	0.732	INTRON GV1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12414383	2L_12414383_SNP [dm3] 2L_12414383_SNP [dm6]	T	A	3.340e^-4	0.732	INTRON vir-1
2R	7647105	2R_7647105_SNP [dm3] 2R_11759600_SNP [dm6]	A	G	3.340e^-4	0.732	INTRON ths
2L	7372112	2L_7372112_INS [dm3] 2L_7372112_INS [dm6]	G	GT	3.341e^-4	0.732	INTRON Wnt10	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7372126	2L_7372126_SNP [dm3] 2L_7372126_SNP [dm6]	C	A	3.341e^-4	0.732	INTRON Wnt10	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9660900	3L_9660900_SNP [dm3] 3L_9667800_SNP [dm6]	A	G	3.352e^-4	0.732	SYNONYMOUS_CODING fry
3L	9660903	3L_9660903_SNP [dm3] 3L_9667803_SNP [dm6]	T	C	3.352e^-4	0.732	SYNONYMOUS_CODING fry
2R	3722889	2R_3722889_SNP [dm3] 2R_7835384_SNP [dm6]	A	G	3.353e^-4	0.732	UTR_3_PRIME Atg10 & 1 other DOWNSTREAM Atg10
2R	3722903	2R_3722903_SNP [dm3] 2R_7835398_SNP [dm6]	T	G	3.353e^-4	0.732	UTR_3_PRIME Atg10 & 1 other DOWNSTREAM Atg10
3L	9723497	3L_9723497_SNP [dm3] 3L_9730397_SNP [dm6]	C	T	3.361e^-4	0.732	SYNONYMOUS_CODING ATPsyn-b DOWNSTREAM Naa60 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20379825	X_20379825_SNP [dm3] X_20508798_SNP [dm6]	C	A	3.363e^-4	0.732	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	13382576	3L_13382576_SNP [dm3] 3L_13389476_SNP [dm6]	T	G	3.366e^-4	0.732	SYNONYMOUS_CODING Poc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	1310478	X_1310478_DEL [dm3] X_1416445_DEL [dm6]	TGAATAGTTTATCCCATTGT...	T	3.367e^-4	0.732	INTRON futsch
3L	12130653	3L_12130653_SNP [dm3] 3L_12137553_SNP [dm6]	T	G	3.369e^-4	0.732	UTR_3_PRIME Atg12 & 1 other UPSTREAM CG5645 DOWNSTREAM l_3_neo18	TF binding site BDTNP1_TFBS_z
2L	7398679	2L_7398679_SNP [dm3] 2L_7398679_SNP [dm6]	A	G	3.377e^-4	0.732	UTR_5_PRIME CG5160 UPSTREAM CR44079
2L	7398702	2L_7398702_SNP [dm3] 2L_7398702_SNP [dm6]	C	T	3.377e^-4	0.732	UTR_5_PRIME CG5160 UPSTREAM CR44079
2L	7398761	2L_7398761_SNP [dm3] 2L_7398761_SNP [dm6]	C	G	3.377e^-4	0.732	UPSTREAM CR44079 & 1 other INTERGENIC
X	5362298	X_5362298_INS [dm3] X_5468265_INS [dm6]	G	GG	3.380e^-4	0.732	INTRON SPR
X	12681693	X_12681693_SNP [dm3] X_12787660_SNP [dm6]	A	T	3.386e^-4	0.732	UTR_3_PRIME Pde9	TF binding site BDTNP1_TFBS_dl
3L	13380223	3L_13380223_SNP [dm3] 3L_13387123_SNP [dm6]	A	C	3.391e^-4	0.732	SYNONYMOUS_CODING CG10171	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20252691	3L_20252691_DEL [dm3] 3L_20259591_DEL [dm6]	GG	G	3.397e^-4	0.732	UPSTREAM rdgC INTRON rdgC	transposable element FlyBase
X	20380028	X_20380028_SNP [dm3] X_20509001_SNP [dm6]	A	T	3.400e^-4	0.732	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	5483981	2L_5483981_SNP [dm3] 2L_5483981_SNP [dm6]	T	C	3.409e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12850986	3L_12850986_SNP [dm3] 3L_12857886_SNP [dm6]	A	T	3.410e^-4	0.732	UTR_3_PRIME CG32107 DOWNSTREAM Ent3	TF binding site mE1_TFBS_kn
2R	12982568	2R_12982568_SNP [dm3] 2R_17095063_SNP [dm6]	G	T	3.412e^-4	0.732	SPLICE_SITE_REGION GstS1 INTRON GstS1	TF binding site mE1_TFBS_cad
2R	7650654	2R_7650654_SNP [dm3] 2R_11763149_SNP [dm6]	C	T	3.413e^-4	0.732	INTRON ths
3L	9742734	3L_9742734_SNP [dm3] 3L_9749634_SNP [dm6]	G	A	3.414e^-4	0.732	NON_SYNONYMOUS_CODING CG42268	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9212901	2L_9212901_SNP [dm3] 2L_9212901_SNP [dm6]	C	T	3.437e^-4	0.732	INTRON tai
2R	10344911	2R_10344911_SNP [dm3] 2R_14457406_SNP [dm6]	A	G	3.438e^-4	0.732	INTRON Oaz	TF binding site BDTNP1_TFBS_dl
2R	10344917	2R_10344917_SNP [dm3] 2R_14457412_SNP [dm6]	C	T	3.438e^-4	0.732	INTRON Oaz	TF binding site BDTNP1_TFBS_dl
3L	7475342	3L_7475342_SNP [dm3] 3L_7482242_SNP [dm6]	G	C	3.451e^-4	0.732	INTERGENIC
2R	6250111	2R_6250111_SNP [dm3] 2R_10362606_SNP [dm6]	C	A	3.454e^-4	0.732	NON_SYNONYMOUS_CODING Gr47a INTRON CG42732
3L	18789522	3L_18789522_SNP [dm3] 3L_18796422_SNP [dm6]	T	A	3.461e^-4	0.732	INTRON ftz-f1
2R	13776189	2R_13776189_SNP [dm3] 2R_17888684_SNP [dm6]	T	C	3.463e^-4	0.732	SYNONYMOUS_CODING PPO1 INTRON Elk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4509302	X_4509302_SNP [dm3] X_4615269_SNP [dm6]	A	T	3.472e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19072452	2L_19072452_SNP [dm3] 2L_19072452_SNP [dm6]	C	G	3.472e^-4	0.732	INTRON CG17572
2L	19072459	2L_19072459_DEL [dm3] 2L_19072459_DEL [dm6]	TACA	GC	3.472e^-4	0.732	INTRON CG17572
2L	759218	2L_759218_SNP [dm3] 2L_759218_SNP [dm6]	C	T	3.473e^-4	0.732	INTRON GABA-B-R3
2L	759222	2L_759222_SNP [dm3] 2L_759222_SNP [dm6]	C	T	3.473e^-4	0.732	INTRON GABA-B-R3
2R	13494836	2R_13494836_SNP [dm3] 2R_17607331_SNP [dm6]	T	G	3.487e^-4	0.732	SYNONYMOUS_CODING CG10936	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10401663	2R_10401663_SNP [dm3] 2R_14514158_SNP [dm6]	C	T	3.491e^-4	0.732	NON_SYNONYMOUS_CODING CG30197 INTRON Cpr51A
3L	12132529	3L_12132529_SNP [dm3] 3L_12139429_SNP [dm6]	A	C	3.495e^-4	0.732	UPSTREAM l_3_neo18 INTRON RhoGAP68F
3R	4776975	3R_4776975_SNP [dm3] 3R_8951253_SNP [dm6]	T	C	3.499e^-4	0.732	UTR_3_PRIME CG11966
X	14080842	X_14080842_DEL [dm3] X_14186809_DEL [dm6]	AA	A	3.500e^-4	0.732	UPSTREAM CG12481 INTERGENIC	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2L	10553159	2L_10553159_INS [dm3] 2L_10553159_INS [dm6]	T	TATTAGGT	3.501e^-4	0.732	INTRON Trim9	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	7520381	2L_7520381_SNP [dm3] 2L_7520381_SNP [dm6]	C	T	3.503e^-4	0.732	DOWNSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1548073	2L_1548073_SNP [dm3] 2L_1548073_SNP [dm6]	C	T	3.506e^-4	0.732	INTERGENIC
3L	8880919	3L_8880919_SNP [dm3] 3L_8887819_SNP [dm6]	T	C	3.517e^-4	0.732	DOWNSTREAM CG43169 INTRON dally
2R	19167962	2R_19167962_SNP [dm3] 2R_23280439_SNP [dm6]	C	G	3.525e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15007934	3L_15007934_SNP [dm3] 3L_15014834_SNP [dm6]	T	A	3.525e^-4	0.732	UTR_3_PRIME Sytbeta UPSTREAM Reck	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3R	11123936	3R_11123936_SNP [dm3] 3R_15298214_SNP [dm6]	G	A	3.534e^-4	0.732	DOWNSTREAM Tm1 INTRON Tm1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6088499	2R_6088499_SNP [dm3] 2R_10200994_SNP [dm6]	A	G	3.548e^-4	0.732	INTERGENIC
X	18721572	X_18721572_SNP [dm3] X_18827539_SNP [dm6]	A	T	3.557e^-4	0.732	UTR_3_PRIME CG42450 DOWNSTREAM CG42450
2R	13776096	2R_13776096_SNP [dm3] 2R_17888591_SNP [dm6]	C	T	3.572e^-4	0.732	SYNONYMOUS_CODING PPO1 INTRON Elk	TF binding site mE1_TFBS_cad
3L	13789603	3L_13789603_SNP [dm3] 3L_13796503_SNP [dm6]	T	G	3.581e^-4	0.732	INTRON bru-3
3L	13789613	3L_13789613_DEL [dm3] 3L_13796513_DEL [dm6]	TA	T	3.581e^-4	0.732	INTRON bru-3
2R	17110154	2R_17110154_SNP [dm3] 2R_21222649_SNP [dm6]	A	T	3.594e^-4	0.732	INTRON ASPP	TF binding site mE1_TFBS_cad
3L	9740424	3L_9740424_SNP [dm3] 3L_9747324_SNP [dm6]	C	T	3.594e^-4	0.732	NON_SYNONYMOUS_CODING CG42268	TF binding site mE1_TFBS_cad
3L	9741686	3L_9741686_SNP [dm3] 3L_9748586_SNP [dm6]	G	A	3.594e^-4	0.732	SYNONYMOUS_CODING CG42268	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19958809	2L_19958809_SNP [dm3] 2L_19958809_SNP [dm6]	C	G	3.603e^-4	0.732	UPSTREAM CoIV DOWNSTREAM sick INTRON CoIV	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13011348	3L_13011348_SNP [dm3] 3L_13018248_SNP [dm6]	G	A	3.610e^-4	0.732	UPSTREAM ste14 & 1 other DOWNSTREAM CR45445 INTERGENIC
3L	7848306	3L_7848306_SNP [dm3] 3L_7855206_SNP [dm6]	T	C	3.617e^-4	0.732	UTR_5_PRIME Pdp1 INTRON Pdp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	702221	2L_702221_SNP [dm3] 2L_702221_SNP [dm6]	G	A	3.620e^-4	0.732	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3R	12929201	3R_12929201_SNP [dm3] 3R_17103479_SNP [dm6]	T	C	3.623e^-4	0.732	INTRON cher
3L	2077127	3L_2077127_SNP [dm3] 3L_2077127_SNP [dm6]	C	G	3.632e^-4	0.732	SYNONYMOUS_CODING sls INTRON sls
2R	8962417	2R_8962417_SNP [dm3] 2R_13074912_SNP [dm6]	T	C	3.639e^-4	0.732	INTRON Drl-2
2L	4281004	2L_4281004_SNP [dm3] 2L_4281004_SNP [dm6]	T	C	3.641e^-4	0.732	INTRON Art2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10204894	X_10204894_SNP [dm3] X_10310861_SNP [dm6]	A	G	3.647e^-4	0.732	INTRON alpha-Man-I
2R	10666955	2R_10666955_SNP [dm3] 2R_14779450_SNP [dm6]	A	G	3.659e^-4	0.732	INTRON kn
3R	4374634	3R_4374634_SNP [dm3] 3R_8548912_SNP [dm6]	T	C	3.667e^-4	0.732	INTERGENIC
X	13640603	X_13640603_SNP [dm3] X_13746570_SNP [dm6]	A	G	3.668e^-4	0.732	UTR_3_PRIME Pdcd4 DOWNSTREAM Pdcd4	TF binding site BDTNP1_TFBS_dl
3R	26038037	3R_26038037_SNP [dm3] 3R_30212315_SNP [dm6]	A	G	3.670e^-4	0.732	SYNONYMOUS_CODING CecA2 UPSTREAM Cec2 DOWNSTREAM Cec-Psi1 & 1 other
2R	3896149	2R_3896149_SNP [dm3] 2R_8008644_SNP [dm6]	A	C	3.683e^-4	0.732	DOWNSTREAM CG14762 INTRON Odc2	TF binding site mE1_TFBS_cad
3R	4751622	3R_4751622_SNP [dm3] 3R_8925900_SNP [dm6]	T	C	3.687e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	5002095	2L_5002095_SNP [dm3] 2L_5002095_SNP [dm6]	A	G	3.689e^-4	0.732	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run
3L	19200967	3L_19200967_SNP [dm3] 3L_19207867_SNP [dm6]	C	A	3.692e^-4	0.732	INTRON fz2
2L	6539113	2L_6539113_SNP [dm3] 2L_6539113_SNP [dm6]	A	C	3.699e^-4	0.732	INTRON eya
2R	13785781	2R_13785781_SNP [dm3] 2R_17898276_SNP [dm6]	T	C	3.708e^-4	0.732	UTR_5_PRIME Elk
2L	14547883	2L_14547883_SNP [dm3] 2L_14547883_SNP [dm6]	G	A	3.709e^-4	0.732	SYNONYMOUS_CODING CG4218 DOWNSTREAM CG4218	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12592025	2L_12592025_DEL [dm3] 2L_12592025_DEL [dm6]	TACAGTACACTAGCATGTTG...	T	3.712e^-4	0.732	INTRON nub
2L	3443641	2L_3443641_SNP [dm3] 2L_3443641_SNP [dm6]	C	T	3.712e^-4	0.732	INTERGENIC
3R	13688635	3R_13688635_SNP [dm3] 3R_17862913_SNP [dm6]	C	A	3.712e^-4	0.732	INTRON tinc
2L	19027671	2L_19027671_SNP [dm3] 2L_19027671_SNP [dm6]	A	C	3.713e^-4	0.732	UPSTREAM Side INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19034748	2L_19034748_SNP [dm3] 2L_19034748_SNP [dm6]	G	T	3.713e^-4	0.732	UTR_5_PRIME mib2 UPSTREAM mib2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	12130419	3L_12130419_SNP [dm3] 3L_12137319_SNP [dm6]	A	T	3.723e^-4	0.732	UPSTREAM CG5645 DOWNSTREAM l_3_neo18 INTRON Atg12	TF binding site BDTNP1_TFBS_z
2R	17854072	2R_17854072_SNP [dm3] 2R_21966567_SNP [dm6]	A	C	3.736e^-4	0.732	INTRON ppk9
2R	17854077	2R_17854077_SNP [dm3] 2R_21966572_SNP [dm6]	A	T	3.736e^-4	0.732	INTRON ppk9
2R	19773574	2R_19773574_SNP [dm3] 2R_23886051_SNP [dm6]	G	A	3.736e^-4	0.732	UPSTREAM CG5597 INTERGENIC
3R	10300280	3R_10300280_SNP [dm3] 3R_14474558_SNP [dm6]	A	G	3.748e^-4	0.732	INTRON cv-c	TF binding site mE1_TFBS_cad
3R	13161593	3R_13161593_SNP [dm3] 3R_17335871_SNP [dm6]	T	C	3.750e^-4	0.732	INTRON beat-IIa
3L	16546307	3L_16546307_SNP [dm3] 3L_16553207_SNP [dm6]	A	C	3.762e^-4	0.732	INTERGENIC
2L	13331595	2L_13331595_SNP [dm3] 2L_13331595_SNP [dm6]	C	G	3.768e^-4	0.732	UPSTREAM CG43778 INTERGENIC
2L	8524462	2L_8524462_SNP [dm3] 2L_8524462_SNP [dm6]	C	T	3.769e^-4	0.732	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19503044	2R_19503044_SNP [dm3] 2R_23615521_SNP [dm6]	C	T	3.769e^-4	0.732	UPSTREAM CG4019 INTRON CG17664	TF binding site mE1_TFBS_HSA
3L	3399391	3L_3399391_SNP [dm3] 3L_3399391_SNP [dm6]	T	A	3.769e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3399470	3L_3399470_SNP [dm3] 3L_3399470_SNP [dm6]	T	A	3.769e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3399471	3L_3399471_DEL [dm3] 3L_3399471_DEL [dm6]	AATGTACATAACCTTACA...	A	3.769e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3399513	3L_3399513_SNP [dm3] 3L_3399513_SNP [dm6]	T	A	3.769e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18281664	X_18281664_SNP [dm3] X_18387631_SNP [dm6]	C	T	3.769e^-4	0.732	UTR_5_PRIME Tsf1 UPSTREAM Tsf1
2L	4141943	2L_4141943_SNP [dm3] 2L_4141943_SNP [dm6]	A	T	3.774e^-4	0.732	INTERGENIC
3R	16285581	3R_16285581_DEL [dm3] 3R_20459859_DEL [dm6]	AGAACAACAA	A	3.801e^-4	0.732	INTRON Gfrl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2216629	X_2216629_SNP [dm3] X_2322596_SNP [dm6]	T	G	3.802e^-4	0.732	UPSTREAM CR34052 INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	9661165	3L_9661165_SNP [dm3] 3L_9668065_SNP [dm6]	A	G	3.813e^-4	0.732	SYNONYMOUS_CODING fry
2R	4941526	2R_4941526_DEL [dm3] 2R_9054021_DEL [dm6]	TA	T	3.826e^-4	0.732	INTRON CG13743
X	12666198	X_12666198_SNP [dm3] X_12772165_SNP [dm6]	T	G	3.842e^-4	0.732	UTR_3_PRIME CG3812 & 1 other
X	1310520	X_1310520_SNP [dm3] X_1416487_SNP [dm6]	T	G	3.843e^-4	0.732	INTRON futsch
3R	4719924	3R_4719924_SNP [dm3] 3R_8894202_SNP [dm6]	A	T	3.846e^-4	0.732	INTRON pyd	TF binding site mE1_TFBS_Trl
X	14019154	X_14019154_SNP [dm3] X_14125121_SNP [dm6]	G	T	3.846e^-4	0.732	INTERGENIC
2L	3444364	2L_3444364_SNP [dm3] 2L_3444364_SNP [dm6]	C	T	3.848e^-4	0.732	INTERGENIC
3L	12130399	3L_12130399_SNP [dm3] 3L_12137299_SNP [dm6]	C	A	3.850e^-4	0.732	SPLICE_SITE_REGION Atg12 UPSTREAM CG5645 DOWNSTREAM l_3_neo18 INTRON Atg12	TF binding site BDTNP1_TFBS_z
3L	7897474	3L_7897474_SNP [dm3] 3L_7904374_SNP [dm6]	G	A	3.852e^-4	0.732	UPSTREAM pbl INTRON pbl
3R	3444316	3R_3444316_SNP [dm3] 3R_7618594_SNP [dm6]	G	T	3.854e^-4	0.732	INTRON CG34127
X	10069941	X_10069941_SNP [dm3] X_10175908_SNP [dm6]	A	T	3.857e^-4	0.732	INTRON CG43902 & 1 other
X	10069951	X_10069951_SNP [dm3] X_10175918_SNP [dm6]	C	G	3.857e^-4	0.732	INTRON CG43902 & 1 other
2R	6916449	2R_6916449_SNP [dm3] 2R_11028944_SNP [dm6]	G	A	3.857e^-4	0.732	INTRON luna
X	20379763	X_20379763_SNP [dm3] X_20508736_SNP [dm6]	A	G	3.858e^-4	0.732	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl
X	9614493	X_9614493_SNP [dm3] X_9720460_SNP [dm6]	A	G	3.868e^-4	0.732	INTERGENIC
3L	4778872	3L_4778872_INS [dm3] 3L_4778872_INS [dm6]	A	ACTGCAGCAGTCTAA...	3.875e^-4	0.732	INTRON RhoGEF64C
3R	4718407	3R_4718407_SNP [dm3] 3R_8892685_SNP [dm6]	C	T	3.888e^-4	0.732	INTRON pyd
3R	26093567	3R_26093567_SNP [dm3] 3R_30267845_SNP [dm6]	T	A	3.890e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	17042462	3L_17042462_SNP [dm3] 3L_17049362_SNP [dm6]	G	A	3.891e^-4	0.732	UPSTREAM rogdi DOWNSTREAM TpnC73F INTERGENIC
2L	14547937	2L_14547937_SNP [dm3] 2L_14547937_SNP [dm6]	C	G	3.894e^-4	0.732	NON_SYNONYMOUS_CODING CG4218 DOWNSTREAM CG4218	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14547943	2L_14547943_SNP [dm3] 2L_14547943_SNP [dm6]	A	G	3.894e^-4	0.732	SYNONYMOUS_CODING CG4218 DOWNSTREAM CG4218	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14547954	2L_14547954_SNP [dm3] 2L_14547954_SNP [dm6]	T	C	3.894e^-4	0.732	NON_SYNONYMOUS_CODING CG4218 DOWNSTREAM CG4218	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6086491	2R_6086491_SNP [dm3] 2R_10198986_SNP [dm6]	C	G	3.908e^-4	0.732	INTRON CG34221
3L	14147422	3L_14147422_SNP [dm3] 3L_14154322_SNP [dm6]	G	A	3.912e^-4	0.732	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13939135	2R_13939135_SNP [dm3] 2R_18051630_SNP [dm6]	G	T	3.916e^-4	0.732	DOWNSTREAM CG10911 INTRON Muc55B
3L	20226732	3L_20226732_SNP [dm3] 3L_20233632_SNP [dm6]	C	G	3.929e^-4	0.732	UTR_3_PRIME CG17233 DOWNSTREAM CG13813
2R	8588006	2R_8588006_SNP [dm3] 2R_12700501_SNP [dm6]	G	A	3.932e^-4	0.732	SYNONYMOUS_CODING wuc
X	14293648	X_14293648_SNP [dm3] X_14399615_SNP [dm6]	C	G	3.936e^-4	0.732	INTRON dpr8
3R	3902790	3R_3902790_SNP [dm3] 3R_8077068_SNP [dm6]	A	C	3.941e^-4	0.732	INTRON mAChR-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6767311	2R_6767311_SNP [dm3] 2R_10879806_SNP [dm6]	T	G	3.947e^-4	0.732	UPSTREAM Pex6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_ttk
3L	3399460	3L_3399460_DEL [dm3] 3L_3399460_DEL [dm6]	TAT	T	3.951e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3399467	3L_3399467_SNP [dm3] 3L_3399467_SNP [dm6]	T	C	3.951e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2984689	3L_2984689_SNP [dm3] 3L_2984689_SNP [dm6]	G	A	3.960e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	12231117	3R_12231117_SNP [dm3] 3R_16405395_SNP [dm6]	A	C	3.974e^-4	0.732	INTERGENIC
2L	9990848	2L_9990848_INS [dm3] 2L_9990848_INS [dm6]	T	TT	3.974e^-4	0.732	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	13381029	3L_13381029_SNP [dm3] 3L_13387929_SNP [dm6]	C	A	3.976e^-4	0.732	UPSTREAM CG10171 DOWNSTREAM Poc1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	13381032	3L_13381032_SNP [dm3] 3L_13387932_SNP [dm6]	A	T	3.976e^-4	0.732	UPSTREAM CG10171 DOWNSTREAM Poc1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	3444567	2L_3444567_SNP [dm3] 2L_3444567_SNP [dm6]	A	G	3.977e^-4	0.732	INTERGENIC
3R	17245949	3R_17245949_SNP [dm3] 3R_21420227_SNP [dm6]	A	T	3.985e^-4	0.732	INTRON lbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7643772	2R_7643772_SNP [dm3] 2R_11756267_SNP [dm6]	C	T	3.986e^-4	0.732	UPSTREAM ths INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1386327	2L_1386327_SNP [dm3] 2L_1386327_SNP [dm6]	A	G	3.987e^-4	0.732	INTRON lea
3L	14994920	3L_14994920_SNP [dm3] 3L_15001820_SNP [dm6]	T	A	3.989e^-4	0.732	UTR_3_PRIME Reck DOWNSTREAM Prosbeta2	TF binding site mE1_TFBS_cad
X	3085130	X_3085130_SNP [dm3] X_3191097_SNP [dm6]	A	G	3.989e^-4	0.732	INTRON dnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12982589	2R_12982589_SNP [dm3] 2R_17095084_SNP [dm6]	G	T	3.999e^-4	0.732	INTRON GstS1	TF binding site mE1_TFBS_cad
2L	12492842	2L_12492842_SNP [dm3] 2L_12492842_SNP [dm6]	G	A	4.000e^-4	0.732	UPSTREAM bun INTRON bun
2R	17948372	2R_17948372_SNP [dm3] 2R_22060867_SNP [dm6]	A	G	4.006e^-4	0.732	UPSTREAM Snp & 1 other INTRON CG13501	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	9533037	2L_9533037_SNP [dm3] 2L_9533037_SNP [dm6]	G	T	4.020e^-4	0.732	INTRON Oatp30B
3R	13856186	3R_13856186_SNP [dm3] 3R_18030464_SNP [dm6]	A	T	4.034e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	7230836	2R_7230836_SNP [dm3] 2R_11343331_SNP [dm6]	A	C	4.037e^-4	0.732	UPSTREAM thetaTry DOWNSTREAM alphaTry INTERGENIC
2R	10532584	2R_10532584_SNP [dm3] 2R_14645079_SNP [dm6]	A	T	4.053e^-4	0.732	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10532592	2R_10532592_SNP [dm3] 2R_14645087_SNP [dm6]	A	C	4.053e^-4	0.732	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5477376	2L_5477376_SNP [dm3] 2L_5477376_SNP [dm6]	C	T	4.054e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_sens
2R	19469161	2R_19469161_SNP [dm3] 2R_23581638_SNP [dm6]	C	G	4.057e^-4	0.732	INTRON apt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6897451	3L_6897451_SNP [dm3] 3L_6904351_SNP [dm6]	T	C	4.060e^-4	0.732	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6957021	3L_6957021_DEL [dm3] 3L_6963921_DEL [dm6]	GCAG	G	4.062e^-4	0.732	INTRON sgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Trl
3L	6957035	3L_6957035_SNP [dm3] 3L_6963935_SNP [dm6]	T	C	4.062e^-4	0.732	INTRON sgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Trl
3L	6957084	3L_6957084_SNP [dm3] 3L_6963984_SNP [dm6]	A	C	4.062e^-4	0.732	INTRON sgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_sens mE1_TFBS_Trl
3L	8061011	3L_8061011_SNP [dm3] 3L_8067911_SNP [dm6]	A	G	4.062e^-4	0.732	DOWNSTREAM tRNA:CR32363 & 1 other INTRON Ect4
2L	19007942	2L_19007942_SNP [dm3] 2L_19007942_SNP [dm6]	G	T	4.066e^-4	0.732	NON_SYNONYMOUS_CODING CG31793 DOWNSTREAM RpL30 & 1 other
X	9816287	X_9816287_SNP [dm3] X_9922254_SNP [dm6]	T	C	4.069e^-4	0.732	INTERGENIC
3L	6907303	3L_6907303_SNP [dm3] 3L_6914203_SNP [dm6]	A	G	4.075e^-4	0.732	UPSTREAM Prat2 INTRON Prat2	silencer mE1_HDAC_PRE
3R	19598670	3R_19598670_SNP [dm3] 3R_23772948_SNP [dm6]	T	A	4.083e^-4	0.732	UPSTREAM tst DOWNSTREAM CG10208 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco
3R	19598699	3R_19598699_SNP [dm3] 3R_23772977_SNP [dm6]	T	A	4.083e^-4	0.732	UPSTREAM tst DOWNSTREAM CG10208 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco
2R	18707909	2R_18707909_SNP [dm3] 2R_22820404_SNP [dm6]	G	A	4.085e^-4	0.732	SYNONYMOUS_CODING CG30271	TF binding site mE1_TFBS_chinmo
2L	6702609	2L_6702609_SNP [dm3] 2L_6702609_SNP [dm6]	G	A	4.090e^-4	0.732	INTRON Tsp
3R	13229712	3R_13229712_SNP [dm3] 3R_17403990_SNP [dm6]	G	T	4.090e^-4	0.732	UPSTREAM CG34279 & 1 other DOWNSTREAM CG42823 INTERGENIC
2R	16112691	2R_16112691_SNP [dm3] 2R_20225186_SNP [dm6]	G	C	4.095e^-4	0.732	INTERGENIC
X	15269064	X_15269064_SNP [dm3] X_15375031_SNP [dm6]	T	C	4.104e^-4	0.732	INTRON acj6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5399517	2R_5399517_SNP [dm3] 2R_9512012_SNP [dm6]	T	C	4.107e^-4	0.732	INTRON brp
2R	17324946	2R_17324946_SNP [dm3] 2R_21437441_SNP [dm6]	T	C	4.114e^-4	0.732	INTRON Sdc
3L	13011172	3L_13011172_SNP [dm3] 3L_13018072_SNP [dm6]	G	A	4.125e^-4	0.732	UPSTREAM ste14 & 1 other DOWNSTREAM CR45445 INTERGENIC
X	12837852	X_12837852_SNP [dm3] X_12943819_SNP [dm6]	C	T	4.132e^-4	0.732	INTRON fne
3R	11507593	3R_11507593_DEL [dm3] 3R_15681871_DEL [dm6]	GTGG	G	4.132e^-4	0.732	INTRON pxb
2R	19502410	2R_19502410_SNP [dm3] 2R_23614887_SNP [dm6]	T	A	4.134e^-4	0.732	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	10553843	3L_10553843_SNP [dm3] 3L_10560743_SNP [dm6]	G	C	4.153e^-4	0.732	INTRON A2bp1
3L	2145662	3L_2145662_SNP [dm3] 3L_2145662_SNP [dm6]	T	C	4.156e^-4	0.732	INTRON zormin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10250578	2L_10250578_SNP [dm3] 2L_10250578_SNP [dm6]	T	G	4.162e^-4	0.732	UPSTREAM bsk & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3L	2787376	3L_2787376_SNP [dm3] 3L_2787376_SNP [dm6]	A	G	4.168e^-4	0.732	UTR_3_PRIME CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16761321	2R_16761321_SNP [dm3] 2R_20873816_SNP [dm6]	C	T	4.177e^-4	0.732	UPSTREAM Ipk1 INTRON Ipk1	TF binding site mE1_TFBS_cad
2R	16761338	2R_16761338_SNP [dm3] 2R_20873833_SNP [dm6]	G	C	4.177e^-4	0.732	UPSTREAM Ipk1 INTRON Ipk1	TF binding site mE1_TFBS_cad
2L	15468969	2L_15468969_SNP [dm3] 2L_15468969_SNP [dm6]	T	C	4.184e^-4	0.732	EXON CR45353
X	435242	X_435242_SNP [dm3] X_541209_SNP [dm6]	T	G	4.185e^-4	0.732	INTRON Appl
2L	11147920	2L_11147920_SNP [dm3] 2L_11147920_SNP [dm6]	G	A	4.186e^-4	0.732	INTRON Gyc32E
2L	11147942	2L_11147942_SNP [dm3] 2L_11147942_SNP [dm6]	T	C	4.186e^-4	0.732	INTRON Gyc32E
2R	18154584	2R_18154584_SNP [dm3] 2R_22267079_SNP [dm6]	A	G	4.209e^-4	0.732	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5296789	2L_5296789_DEL [dm3] 2L_5296789_DEL [dm6]	TGTACTAGATGCAT...	T	4.215e^-4	0.732	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	5296829	2L_5296829_SNP [dm3] 2L_5296829_SNP [dm6]	G	A	4.215e^-4	0.732	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	11456689	2R_11456689_SNP [dm3] 2R_15569184_SNP [dm6]	A	T	4.217e^-4	0.732	UTR_5_PRIME CG30466 & 1 other DOWNSTREAM Cdk5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	17883963	2L_17883963_INS [dm3] 2L_17883963_INS [dm6]	T	TGAACAAA	4.232e^-4	0.732	INTERGENIC
X	15172213	X_15172213_INS [dm3] X_15278180_INS [dm6]	G	GCTCG	4.234e^-4	0.732	INTERGENIC
3L	14933120	3L_14933120_SNP [dm3] 3L_14940020_SNP [dm6]	T	C	4.237e^-4	0.732	INTRON DCX-EMAP	TF binding site mE1_TFBS_cad
2L	19033803	2L_19033803_SNP [dm3] 2L_19033803_SNP [dm6]	A	T	4.239e^-4	0.732	NON_SYNONYMOUS_CODING CG31800 UPSTREAM mib2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	19035969	2L_19035969_DEL [dm3] 2L_19035969_DEL [dm6]	TTTTTGTTATATAGTTCAGA...	T	4.239e^-4	0.732	INTRON mib2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	699818	2L_699818_SNP [dm3] 2L_699818_SNP [dm6]	A	G	4.246e^-4	0.732	INTRON ds
3L	13284903	3L_13284903_SNP [dm3] 3L_13291803_SNP [dm6]	G	A	4.258e^-4	0.732	UPSTREAM CR43912 INTERGENIC
2L	3572175	2L_3572175_SNP [dm3] 2L_3572175_SNP [dm6]	C	T	4.278e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	10367911	3R_10367911_SNP [dm3] 3R_14542189_SNP [dm6]	A	G	4.279e^-4	0.732	INTRON Pde6
3L	11319769	3L_11319769_SNP [dm3] 3L_11326669_SNP [dm6]	G	A	4.294e^-4	0.732	INTERGENIC
X	14298170	X_14298170_SNP [dm3] X_14404137_SNP [dm6]	C	A	4.303e^-4	0.732	INTRON dpr8
3R	4742155	3R_4742155_DEL [dm3] 3R_8916433_DEL [dm6]	ATTAAAGGGGTAATATCA...	A	4.306e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10550251	2L_10550251_SNP [dm3] 2L_10550251_SNP [dm6]	T	G	4.310e^-4	0.732	INTRON Trim9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18316330	2R_18316330_SNP [dm3] 2R_22428825_SNP [dm6]	A	C	4.316e^-4	0.732	SYNONYMOUS_CODING ppk12
2R	7640839	2R_7640839_SNP [dm3] 2R_11753334_SNP [dm6]	A	T	4.326e^-4	0.732	INTERGENIC
2R	7649019	2R_7649019_SNP [dm3] 2R_11761514_SNP [dm6]	C	T	4.326e^-4	0.732	INTRON ths
2L	21781637	2L_21781637_SNP [dm3] 2L_21781637_SNP [dm6]	T	C	4.337e^-4	0.732	DOWNSTREAM CG11630 INTRON CG31612	TF binding site BDTNP1_TFBS_twi
2L	21781648	2L_21781648_SNP [dm3] 2L_21781648_SNP [dm6]	G	C	4.337e^-4	0.732	DOWNSTREAM CG11630 INTRON CG31612	TF binding site BDTNP1_TFBS_twi
2R	20289775	2R_20289775_SNP [dm3] 2R_24402252_SNP [dm6]	T	C	4.339e^-4	0.732	UTR_5_PRIME slik UPSTREAM Rpn8 INTRON Rpn8 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20290378	2R_20290378_SNP [dm3] 2R_24402855_SNP [dm6]	C	T	4.339e^-4	0.732	UPSTREAM Rpn8 & 1 other INTRON Rpn8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8081843	3L_8081843_SNP [dm3] 3L_8088743_SNP [dm6]	C	T	4.348e^-4	0.732	SYNONYMOUS_CODING CG7565 INTRON Ect4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25252105	3R_25252105_SNP [dm3] 3R_29426383_SNP [dm6]	A	G	4.359e^-4	0.732	INTRON Ptp99A	TF binding site BDTNP1_TFBS_dl
2L	4715664	2L_4715664_SNP [dm3] 2L_4715664_SNP [dm6]	T	C	4.362e^-4	0.732	INTRON CG34351
2R	16579243	2R_16579243_SNP [dm3] 2R_20691738_SNP [dm6]	G	A	4.366e^-4	0.732	UPSTREAM CR44659 INTERGENIC
2R	13602156	2R_13602156_SNP [dm3] 2R_17714651_SNP [dm6]	C	T	4.370e^-4	0.732	INTRON CG6424
3R	12203417	3R_12203417_SNP [dm3] 3R_16377695_SNP [dm6]	G	A	4.372e^-4	0.732	SYNONYMOUS_CODING ss	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13788049	3L_13788049_SNP [dm3] 3L_13794949_SNP [dm6]	T	A	4.372e^-4	0.732	INTRON bru-3
X	3184225	X_3184225_SNP [dm3] X_3290192_SNP [dm6]	A	C	4.384e^-4	0.732	UTR_5_PRIME dnc UPSTREAM dnc INTRON dnc
X	3927142	X_3927142_SNP [dm3] X_4033109_SNP [dm6]	T	A	4.393e^-4	0.732	INTERGENIC
X	3927158	X_3927158_SNP [dm3] X_4033125_SNP [dm6]	G	A	4.393e^-4	0.732	INTERGENIC
X	3927159	X_3927159_SNP [dm3] X_4033126_SNP [dm6]	T	A	4.393e^-4	0.732	INTERGENIC
X	3927161	X_3927161_INS [dm3] X_4033128_INS [dm6]	TT	AAA	4.393e^-4	0.732	INTERGENIC
X	3927172	X_3927172_SNP [dm3] X_4033139_SNP [dm6]	A	G	4.393e^-4	0.732	INTERGENIC
X	3927175	X_3927175_SNP [dm3] X_4033142_SNP [dm6]	G	T	4.393e^-4	0.732	INTERGENIC
X	3927177	X_3927177_SNP [dm3] X_4033144_SNP [dm6]	A	T	4.393e^-4	0.732	INTERGENIC
X	3927178	X_3927178_SNP [dm3] X_4033145_SNP [dm6]	T	A	4.393e^-4	0.732	INTERGENIC
X	3927181	X_3927181_INS [dm3] X_4033148_INS [dm6]	C	CCTTATAT	4.393e^-4	0.732	INTERGENIC
X	3927183	X_3927183_SNP [dm3] X_4033150_SNP [dm6]	A	C	4.393e^-4	0.732	INTERGENIC
X	3927187	X_3927187_SNP [dm3] X_4033154_SNP [dm6]	C	G	4.393e^-4	0.732	INTERGENIC
3L	9733864	3L_9733864_SNP [dm3] 3L_9740764_SNP [dm6]	G	T	4.413e^-4	0.732	UPSTREAM CR44348 INTRON CG42268
3L	9733949	3L_9733949_SNP [dm3] 3L_9740849_SNP [dm6]	A	G	4.413e^-4	0.732	UPSTREAM CR44348 INTRON CG42268
2L	6357283	2L_6357283_SNP [dm3] 2L_6357283_SNP [dm6]	T	A	4.421e^-4	0.732	NON_SYNONYMOUS_CODING CG9500 DOWNSTREAM ppk14	TF binding site mE1_TFBS_bab1
3L	19565286	3L_19565286_SNP [dm3] 3L_19572186_SNP [dm6]	C	G	4.437e^-4	0.732	INTRON Shal
2L	6975206	2L_6975206_SNP [dm3] 2L_6975206_SNP [dm6]	T	A	4.442e^-4	0.732	INTRON uif	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11860997	3R_11860997_SNP [dm3] 3R_16035275_SNP [dm6]	C	T	4.447e^-4	0.732	INTRON pnr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll
3R	11862600	3R_11862600_SNP [dm3] 3R_16036878_SNP [dm6]	C	G	4.447e^-4	0.732	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4488433	2L_4488433_SNP [dm3] 2L_4488433_SNP [dm6]	T	C	4.448e^-4	0.732	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15339922	2L_15339922_SNP [dm3] 2L_15339922_SNP [dm6]	G	A	4.452e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	21753890	2L_21753890_SNP [dm3] 2L_21753890_SNP [dm6]	G	A	4.453e^-4	0.732	UPSTREAM step INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17382095	2R_17382095_SNP [dm3] 2R_21494590_SNP [dm6]	T	C	4.484e^-4	0.732	INTRON Fkbp14
2R	7774666	2R_7774666_SNP [dm3] 2R_11887161_SNP [dm6]	T	A	4.491e^-4	0.732	DOWNSTREAM ERp60 INTRON cuff
2R	7774689	2R_7774689_SNP [dm3] 2R_11887184_SNP [dm6]	C	T	4.491e^-4	0.732	DOWNSTREAM ERp60 INTRON cuff
3L	12129379	3L_12129379_SNP [dm3] 3L_12136279_SNP [dm6]	G	A	4.501e^-4	0.732	NON_SYNONYMOUS_CODING CG5645 UPSTREAM Atg12	TF binding site mE1_TFBS_cad
3R	12075038	3R_12075038_SNP [dm3] 3R_16249316_SNP [dm6]	A	G	4.508e^-4	0.732	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
3R	4771191	3R_4771191_DEL [dm3] 3R_8945469_DEL [dm6]	AC	A	4.509e^-4	0.732	UPSTREAM CG11964 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5478114	3L_5478114_SNP [dm3] 3L_5485014_SNP [dm6]	A	G	4.517e^-4	0.732	INTERGENIC
3L	5478126	3L_5478126_SNP [dm3] 3L_5485026_SNP [dm6]	C	T	4.517e^-4	0.732	INTERGENIC
2L	4488512	2L_4488512_SNP [dm3] 2L_4488512_SNP [dm6]	A	G	4.518e^-4	0.732	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9591745	2L_9591745_SNP [dm3] 2L_9591745_SNP [dm6]	G	A	4.519e^-4	0.732	UTR_3_PRIME CG3841	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3L	14291829	3L_14291829_SNP [dm3] 3L_14298729_SNP [dm6]	A	C	4.522e^-4	0.732	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	23998266	3R_23998266_SNP [dm3] 3R_28172544_SNP [dm6]	A	C	4.528e^-4	0.732	INTRON CG34354
2R	13735970	2R_13735970_SNP [dm3] 2R_17848465_SNP [dm6]	T	C	4.531e^-4	0.732	DOWNSTREAM olf186-M INTRON olf186-F
2R	19026181	2R_19026181_SNP [dm3] 2R_23138658_SNP [dm6]	G	T	4.535e^-4	0.732	UTR_5_PRIME CG30192 DOWNSTREAM CG13544
2L	4502501	2L_4502501_SNP [dm3] 2L_4502501_SNP [dm6]	G	T	4.550e^-4	0.732	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13789510	3L_13789510_SNP [dm3] 3L_13796410_SNP [dm6]	C	T	4.562e^-4	0.732	INTRON bru-3
2R	4884715	2R_4884715_SNP [dm3] 2R_8997210_SNP [dm6]	C	T	4.562e^-4	0.732	SYNONYMOUS_CODING Np	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17427521	X_17427521_SNP [dm3] X_17533488_SNP [dm6]	T	A	4.563e^-4	0.732	SYNONYMOUS_CODING CG43658	TF binding site mE1_TFBS_chinmo
2R	10344905	2R_10344905_SNP [dm3] 2R_14457400_SNP [dm6]	A	T	4.565e^-4	0.732	INTRON Oaz	TF binding site BDTNP1_TFBS_dl
3L	7974274	3L_7974274_SNP [dm3] 3L_7981174_SNP [dm6]	T	G	4.567e^-4	0.732	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	6357139	2L_6357139_SNP [dm3] 2L_6357139_SNP [dm6]	G	T	4.568e^-4	0.732	UTR_3_PRIME CG9500 DOWNSTREAM ppk14	TF binding site mE1_TFBS_bab1
2L	12556371	2L_12556371_SNP [dm3] 2L_12556371_SNP [dm6]	T	A	4.569e^-4	0.732	INTERGENIC
3R	3600866	3R_3600866_SNP [dm3] 3R_7775144_SNP [dm6]	A	C	4.570e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10547903	3L_10547903_INS [dm3] 3L_10554803_INS [dm6]	C	CA	4.571e^-4	0.732	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	14035649	3L_14035649_SNP [dm3] 3L_14042549_SNP [dm6]	C	T	4.576e^-4	0.732	SYNONYMOUS_CODING Hsc70Cb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3661913	3L_3661913_SNP [dm3] 3L_3661913_SNP [dm6]	A	T	4.583e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3399399	3L_3399399_SNP [dm3] 3L_3399399_SNP [dm6]	A	G	4.595e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26649721	3R_26649721_SNP [dm3] 3R_30823999_SNP [dm6]	C	T	4.610e^-4	0.732	INTRON cindr	TF binding site mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.447e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.03384
In_3R_Mo	0.08996

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1427 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	9185619	X_9185619_SNP [dm3] X_9291586_SNP [dm6]	G	A	1.296e^-6	0.91	INTRON lz	TF binding site mE1_TFBS_sens
3R	11468334	3R_11468334_SNP [dm3] 3R_15642612_SNP [dm6]	C	A	2.440e^-6	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	20994234	3R_20994234_SNP [dm3] 3R_25168512_SNP [dm6]	T	A	2.782e^-6	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	9478197	2R_9478197_SNP [dm3] 2R_13590692_SNP [dm6]	G	A	3.348e^-6	0.91	SYNONYMOUS_CODING CG6191 UTR_3_PRIME CG45088	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16296713	2L_16296713_SNP [dm3] 2L_16296713_SNP [dm6]	A	G	5.055e^-6	0.91	UTR_3_PRIME Cyp303a1 & 1 other DOWNSTREAM Cyp303a1
3L	1088770	3L_1088770_DEL [dm3] 3L_1088770_DEL [dm6]	TCT	T	7.155e^-6	0.91	INTRON bab1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14760767	3R_14760767_SNP [dm3] 3R_18935045_SNP [dm6]	A	T	7.427e^-6	0.91	INTRON CG42613
2R	17649895	2R_17649895_DEL [dm3] 2R_21762390_DEL [dm6]	TGTATGTAT	T	9.094e^-6	0.91	DOWNSTREAM CR43983 INTERGENIC
3L	16033351	3L_16033351_SNP [dm3] 3L_16040251_SNP [dm6]	C	A	9.307e^-6	0.91	INTRON th	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	8927259	3L_8927259_SNP [dm3] 3L_8934159_SNP [dm6]	T	A	1.114e^-5	0.91	INTRON CG43783
2R	17649831	2R_17649831_DEL [dm3] 2R_21762326_DEL [dm6]	TCA	T	1.249e^-5	0.91	DOWNSTREAM CR43983 INTERGENIC
2R	17649841	2R_17649841_SNP [dm3] 2R_21762336_SNP [dm6]	A	T	1.249e^-5	0.91	DOWNSTREAM CR43983 INTERGENIC
2L	15389863	2L_15389863_SNP [dm3] 2L_15389863_SNP [dm6]	G	T	1.276e^-5	0.91	INTERGENIC
3L	13630499	3L_13630499_SNP [dm3] 3L_13637399_SNP [dm6]	C	A	1.291e^-5	0.91	INTRON bru-3
3R	14760736	3R_14760736_SNP [dm3] 3R_18935014_SNP [dm6]	T	C	1.578e^-5	0.91	INTRON CG42613
3R	10872817	3R_10872817_SNP [dm3] 3R_15047095_SNP [dm6]	A	G	1.731e^-5	0.91	INTERGENIC
2R	16168787	2R_16168787_SNP [dm3] 2R_20281282_SNP [dm6]	G	C	1.906e^-5	0.91	UPSTREAM CG9090 DOWNSTREAM CG16868 INTERGENIC
2R	16168848	2R_16168848_SNP [dm3] 2R_20281343_SNP [dm6]	T	C	1.906e^-5	0.91	UPSTREAM CG9090 DOWNSTREAM CG16868 INTERGENIC
2R	16168903	2R_16168903_SNP [dm3] 2R_20281398_SNP [dm6]	A	T	1.906e^-5	0.91	UPSTREAM CG9090 DOWNSTREAM CG16868 INTERGENIC
X	6515761	X_6515761_DEL [dm3] X_6621728_DEL [dm6]	TTTTTT	T	2.000e^-5	0.91	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7142933	X_7142933_SNP [dm3] X_7248900_SNP [dm6]	G	A	2.005e^-5	0.91	INTRON CR44357
2R	5317762	2R_5317762_SNP [dm3] 2R_9430257_SNP [dm6]	T	G	2.171e^-5	0.91	INTRON Pdk
3L	9392860	3L_9392860_SNP [dm3] 3L_9399760_SNP [dm6]	A	G	2.332e^-5	0.91	UTR_3_PRIME eIF-4E UPSTREAM CG4080	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12101525	3L_12101525_SNP [dm3] 3L_12108425_SNP [dm6]	A	G	2.416e^-5	0.91	INTERGENIC
3R	10872821	3R_10872821_SNP [dm3] 3R_15047099_SNP [dm6]	A	G	2.474e^-5	0.91	INTERGENIC
3L	9395926	3L_9395926_SNP [dm3] 3L_9402826_SNP [dm6]	A	T	2.488e^-5	0.91	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl mE1_TFBS_Ubx
2L	20515560	2L_20515560_SNP [dm3] 2L_20515560_SNP [dm6]	A	G	2.502e^-5	0.91	INTERGENIC
2L	20515562	2L_20515562_SNP [dm3] 2L_20515562_SNP [dm6]	C	G	2.502e^-5	0.91	INTERGENIC
X	2212649	X_2212649_DEL [dm3] X_2318616_DEL [dm6]	GT	G	2.635e^-5	0.91	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19236941	3L_19236941_SNP [dm3] 3L_19243841_SNP [dm6]	G	T	2.647e^-5	0.91	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8351140	3R_8351140_SNP [dm3] 3R_12525418_SNP [dm6]	T	C	2.745e^-5	0.91	UPSTREAM Hug INTRON Octbeta3R
2R	15815381	2R_15815381_DEL [dm3] 2R_19927876_DEL [dm6]	CAACTTTTTATACTTATCCC...	C	2.769e^-5	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	10981279	3L_10981279_SNP [dm3] 3L_10988179_SNP [dm6]	A	G	3.123e^-5	0.91	INTRON klu
3L	12101542	3L_12101542_SNP [dm3] 3L_12108442_SNP [dm6]	C	T	3.191e^-5	0.91	INTERGENIC
2R	16967755	2R_16967755_SNP [dm3] 2R_21080250_SNP [dm6]	C	T	3.214e^-5	0.91	UPSTREAM Treh INTRON Treh
4	508828	4_508828_SNP [dm3] 4_488202_SNP [dm6]	G	A	3.358e^-5	0.91	INTRON Asator	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	9392778	3L_9392778_SNP [dm3] 3L_9399678_SNP [dm6]	C	T	3.526e^-5	0.91	UTR_3_PRIME eIF-4E UPSTREAM CG4080	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8956615	3R_8956615_SNP [dm3] 3R_13130893_SNP [dm6]	C	T	3.526e^-5	0.91	INTRON timeout & 1 other
3L	3735132	3L_3735132_SNP [dm3] 3L_3735132_SNP [dm6]	C	A	3.528e^-5	0.91	INTRON CG32264
2R	18119336	2R_18119336_SNP [dm3] 2R_22231831_SNP [dm6]	C	T	3.581e^-5	0.91	INTERGENIC
3L	8921816	3L_8921816_SNP [dm3] 3L_8928716_SNP [dm6]	A	G	3.834e^-5	0.91	INTRON Tsp66E
2R	16168805	2R_16168805_SNP [dm3] 2R_20281300_SNP [dm6]	G	T	3.844e^-5	0.91	UPSTREAM CG9090 DOWNSTREAM CG16868 INTERGENIC
X	15166740	X_15166740_SNP [dm3] X_15272707_SNP [dm6]	T	G	3.851e^-5	0.91	UPSTREAM CG9106 INTERGENIC
3R	9834110	3R_9834110_SNP [dm3] 3R_14008388_SNP [dm6]	C	A	4.045e^-5	0.91	INTRON rdx
2L	14686238	2L_14686238_SNP [dm3] 2L_14686238_SNP [dm6]	A	T	4.253e^-5	0.91	INTRON osp
3L	16549674	3L_16549674_SNP [dm3] 3L_16556574_SNP [dm6]	C	G	4.489e^-5	0.91	UPSTREAM CG4229 INTERGENIC
3R	14761203	3R_14761203_SNP [dm3] 3R_18935481_SNP [dm6]	T	C	4.578e^-5	0.91	INTRON CG42613
3R	25087923	3R_25087923_SNP [dm3] 3R_29262201_SNP [dm6]	G	C	4.699e^-5	0.91	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3946684	3L_3946684_SNP [dm3] 3L_3946684_SNP [dm6]	T	C	5.055e^-5	0.91	UTR_3_PRIME CG14982 DOWNSTREAM CG14982
3L	1088841	3L_1088841_SNP [dm3] 3L_1088841_SNP [dm6]	G	T	5.266e^-5	0.91	INTRON bab1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14723781	3R_14723781_SNP [dm3] 3R_18898059_SNP [dm6]	A	T	5.357e^-5	0.91	UPSTREAM CG14297 INTERGENIC
3L	7266950	3L_7266950_SNP [dm3] 3L_7273850_SNP [dm6]	T	G	5.520e^-5	0.91	INTRON unc-13-4A
2R	15815016	2R_15815016_SNP [dm3] 2R_19927511_SNP [dm6]	G	T	5.572e^-5	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	15343743	3R_15343743_SNP [dm3] 3R_19518021_SNP [dm6]	A	T	6.001e^-5	0.91	INTRON Dys
3L	8353926	3L_8353926_SNP [dm3] 3L_8360826_SNP [dm6]	G	A	6.139e^-5	0.91	UTR_5_PRIME Idh UPSTREAM Idh	TF binding site mE1_TFBS_Trl
X	13576232	X_13576232_SNP [dm3] X_13682199_SNP [dm6]	G	A	6.162e^-5	0.91	UPSTREAM CG11158 INTERGENIC
3R	14761024	3R_14761024_SNP [dm3] 3R_18935302_SNP [dm6]	A	G	6.175e^-5	0.91	INTRON CG42613
3R	16090579	3R_16090579_SNP [dm3] 3R_20264857_SNP [dm6]	T	A	6.368e^-5	0.91	INTRON cic
2R	19656607	2R_19656607_SNP [dm3] 2R_23769084_SNP [dm6]	A	G	6.428e^-5	0.91	SPLICE_SITE_REGION CG9850 INTRON CG9850
3L	9139678	3L_9139678_SNP [dm3] 3L_9146578_SNP [dm6]	G	A	6.442e^-5	0.91	UTR_3_PRIME Rdl DOWNSTREAM nwk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9367577	3R_9367577_SNP [dm3] 3R_13541855_SNP [dm6]	A	C	6.481e^-5	0.91	INTERGENIC
3L	11094533	3L_11094533_SNP [dm3] 3L_11101433_SNP [dm6]	C	T	6.540e^-5	0.91	NON_SYNONYMOUS_CODING Elo68beta SPLICE_SITE_REGION Elo68beta DOWNSTREAM APP-BP1 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	912083	X_912083_SNP [dm3] X_1018050_SNP [dm6]	T	C	6.540e^-5	0.91	INTRON su_w[a]_ & 1 other	transposable element FlyBase
X	914259	X_914259_SNP [dm3] X_1020226_SNP [dm6]	A	G	6.540e^-5	0.91	UTR_3_PRIME CG32814 INTRON su_w[a]_ & 1 other
X	920158	X_920158_SNP [dm3] X_1026125_SNP [dm6]	T	C	6.540e^-5	0.91	UPSTREAM CG3021 INTRON su_w[a]_ & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
X	927148	X_927148_SNP [dm3] X_1033115_SNP [dm6]	T	C	6.540e^-5	0.91	UTR_3_PRIME CG14630 UPSTREAM su_w[a]_ INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	936753	X_936753_SNP [dm3] X_1042720_SNP [dm6]	G	A	6.540e^-5	0.91	UTR_5_PRIME su_w[a]_ UTR_3_PRIME su_w[a]_ INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_sens
3L	13047126	3L_13047126_SNP [dm3] 3L_13054026_SNP [dm6]	A	T	6.838e^-5	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	916406	X_916406_SNP [dm3] X_1022373_SNP [dm6]	C	T	6.855e^-5	0.91	INTRON su_w[a]_ & 2 others	transposable element FlyBase
X	940403	X_940403_SNP [dm3] X_1046370_SNP [dm6]	C	T	6.855e^-5	0.91	UTR_5_PRIME CG42259 UPSTREAM CG42259 & 1 other DOWNSTREAM su_w[a]_
3L	11734431	3L_11734431_SNP [dm3] 3L_11741331_SNP [dm6]	C	G	6.873e^-5	0.91	INTRON CG6024	TF binding site mE1_TFBS_chinmo
3L	12688814	3L_12688814_SNP [dm3] 3L_12695714_SNP [dm6]	T	C	7.040e^-5	0.91	INTRON mirr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7939352	2L_7939352_SNP [dm3] 2L_7939352_SNP [dm6]	C	G	7.078e^-5	0.91	INTRON Snoo
3L	13019718	3L_13019718_SNP [dm3] 3L_13026618_SNP [dm6]	C	T	7.092e^-5	0.91	UPSTREAM Zmynd10 INTERGENIC
3L	13019722	3L_13019722_SNP [dm3] 3L_13026622_SNP [dm6]	A	G	7.092e^-5	0.91	UPSTREAM Zmynd10 INTERGENIC
X	1004058	X_1004058_SNP [dm3] X_1110025_SNP [dm6]	C	T	7.109e^-5	0.91	INTRON CG3655
X	1004405	X_1004405_SNP [dm3] X_1110372_SNP [dm6]	A	C	7.109e^-5	0.91	INTRON CG3655
2L	2807698	2L_2807698_DEL [dm3] 2L_2807698_DEL [dm6]	CC	C	7.310e^-5	0.91	UPSTREAM daw INTRON daw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10255394	3L_10255394_SNP [dm3] 3L_10262294_SNP [dm6]	T	C	7.396e^-5	0.91	INTERGENIC
2L	8474281	2L_8474281_SNP [dm3] 2L_8474281_SNP [dm6]	A	T	7.498e^-5	0.91	INTRON d
3L	922998	3L_922998_SNP [dm3] 3L_922998_SNP [dm6]	C	T	7.511e^-5	0.91	INTRON Glut1
3L	17317866	3L_17317866_SNP [dm3] 3L_17324766_SNP [dm6]	C	G	7.536e^-5	0.91	UTR_3_PRIME CG13725 DOWNSTREAM CG13724
3R	21404601	3R_21404601_SNP [dm3] 3R_25578879_SNP [dm6]	G	C	7.600e^-5	0.91	INTRON msi	TF binding site BDTNP1_TFBS_slp1
X	5476825	X_5476825_SNP [dm3] X_5582792_SNP [dm6]	A	G	7.605e^-5	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7153132	2R_7153132_SNP [dm3] 2R_11265627_SNP [dm6]	T	C	7.668e^-5	0.91	SYNONYMOUS_CODING Cpr47Ee	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7486717	2L_7486717_DEL [dm3] 2L_7486717_DEL [dm6]	TCT	T	7.674e^-5	0.91	INTRON Ziz
2R	16487101	2R_16487101_SNP [dm3] 2R_20599596_SNP [dm6]	G	C	7.749e^-5	0.91	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17911593	2R_17911593_SNP [dm3] 2R_22024088_SNP [dm6]	A	G	7.786e^-5	0.91	INTRON CG34370
3R	8850106	3R_8850106_SNP [dm3] 3R_13024384_SNP [dm6]	T	C	7.897e^-5	0.91	DOWNSTREAM CtBP INTRON CtBP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	13984294	3L_13984294_SNP [dm3] 3L_13991194_SNP [dm6]	C	T	7.913e^-5	0.91	INTRON CG17364	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	7206881	X_7206881_SNP [dm3] X_7312848_SNP [dm6]	A	T	7.926e^-5	0.91	INTRON CR44357 & 1 other
2R	17191745	2R_17191745_SNP [dm3] 2R_21304240_SNP [dm6]	G	A	7.937e^-5	0.91	SYNONYMOUS_CODING CG42672	TF binding site mE1_TFBS_cad
X	13480140	X_13480140_SNP [dm3] X_13586107_SNP [dm6]	T	C	7.949e^-5	0.91	INTRON Tango13
2L	12586507	2L_12586507_SNP [dm3] 2L_12586507_SNP [dm6]	G	A	8.049e^-5	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	9422335	3R_9422335_INS [dm3] 3R_13596613_INS [dm6]	A	AGTAGCA	8.050e^-5	0.91	INTERGENIC
3L	8922277	3L_8922277_SNP [dm3] 3L_8929177_SNP [dm6]	A	G	8.086e^-5	0.91	INTRON Tsp66E
X	13575984	X_13575984_SNP [dm3] X_13681951_SNP [dm6]	T	A	8.095e^-5	0.91	INTERGENIC
3L	15681900	3L_15681900_SNP [dm3] 3L_15688800_SNP [dm6]	G	A	8.140e^-5	0.91	STOP_GAINED CG34451 UPSTREAM CG34452	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9422301	3R_9422301_DEL [dm3] 3R_13596579_DEL [dm6]	GG	G	8.372e^-5	0.91	INTERGENIC
3R	9422319	3R_9422319_DEL [dm3] 3R_13596597_DEL [dm6]	AGTTATATATTTAAC...	A	8.372e^-5	0.91	INTERGENIC
X	11669020	X_11669020_SNP [dm3] X_11774987_SNP [dm6]	G	T	8.513e^-5	0.91	INTRON dy	TF binding site mE1_TFBS_chinmo
2R	18200082	2R_18200082_SNP [dm3] 2R_22312577_SNP [dm6]	C	T	8.582e^-5	0.91	UPSTREAM CR44758 & 1 other INTERGENIC
2R	17649869	2R_17649869_DEL [dm3] 2R_21762364_DEL [dm6]	GGGAATGGAG	G	8.636e^-5	0.91	DOWNSTREAM CR43983 INTERGENIC
2R	17649909	2R_17649909_SNP [dm3] 2R_21762404_SNP [dm6]	T	G	8.636e^-5	0.91	DOWNSTREAM CR43983 INTERGENIC
2R	17649910	2R_17649910_SNP [dm3] 2R_21762405_SNP [dm6]	T	C	8.636e^-5	0.91	DOWNSTREAM CR43983 INTERGENIC
3L	18331727	3L_18331727_SNP [dm3] 3L_18338627_SNP [dm6]	T	G	8.759e^-5	0.91	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16376548	2L_16376548_SNP [dm3] 2L_16376548_SNP [dm6]	C	G	8.818e^-5	0.91	INTERGENIC
3L	1691333	3L_1691333_SNP [dm3] 3L_1691333_SNP [dm6]	C	A	9.038e^-5	0.91	INTRON CG7991	TF binding site mE1_TFBS_cad
X	6204334	X_6204334_SNP [dm3] X_6310301_SNP [dm6]	C	A	9.234e^-5	0.91	INTRON CG15894
X	6204338	X_6204338_SNP [dm3] X_6310305_SNP [dm6]	A	T	9.234e^-5	0.91	INTRON CG15894
3L	9955965	3L_9955965_SNP [dm3] 3L_9962865_SNP [dm6]	C	T	9.256e^-5	0.91	INTRON CG34356	TF binding site mE1_TFBS_kn
2R	13935583	2R_13935583_SNP [dm3] 2R_18048078_SNP [dm6]	A	T	9.319e^-5	0.91	UPSTREAM CG34005 & 1 other DOWNSTREAM CG14495 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	5472752	X_5472752_SNP [dm3] X_5578719_SNP [dm6]	C	T	9.410e^-5	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	13480138	X_13480138_SNP [dm3] X_13586105_SNP [dm6]	C	A	9.421e^-5	0.91	INTRON Tango13
3R	13627041	3R_13627041_SNP [dm3] 3R_17801319_SNP [dm6]	A	G	9.584e^-5	0.91	UPSTREAM CG17803 DOWNSTREAM CG17806 INTERGENIC
X	14501884	X_14501884_SNP [dm3] X_14607851_SNP [dm6]	C	T	1.001e^-4	0.91	INTRON NetA	TF binding site BDTNP1_TFBS_twi
3L	14274475	3L_14274475_SNP [dm3] 3L_14281375_SNP [dm6]	C	T	1.012e^-4	0.91	INTRON fz
3L	8921927	3L_8921927_SNP [dm3] 3L_8928827_SNP [dm6]	G	A	1.024e^-4	0.91	INTRON Tsp66E
2L	5705236	2L_5705236_SNP [dm3] 2L_5705236_SNP [dm6]	T	A	1.036e^-4	0.91	INTERGENIC
2R	17713614	2R_17713614_SNP [dm3] 2R_21826109_SNP [dm6]	A	G	1.043e^-4	0.91	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16521511	2R_16521511_SNP [dm3] 2R_20634006_SNP [dm6]	G	C	1.051e^-4	0.91	UTR_3_PRIME rig UPSTREAM Rcd6
X	994529	X_994529_SNP [dm3] X_1100496_SNP [dm6]	A	T	1.060e^-4	0.91	INTRON CG3655	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	978155	X_978155_SNP [dm3] X_1084122_SNP [dm6]	A	G	1.061e^-4	0.91	INTRON CR44779 & 1 other EXON CR44779	TF binding site mE1_TFBS_sens
3L	14247091	3L_14247091_INS [dm3] 3L_14253991_INS [dm6]	C	CT	1.078e^-4	0.91	INTERGENIC
3L	13744000	3L_13744000_SNP [dm3] 3L_13750900_SNP [dm6]	G	C	1.079e^-4	0.91	INTRON bru-3	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	16378090	2L_16378090_SNP [dm3] 2L_16378090_SNP [dm6]	T	C	1.082e^-4	0.91	INTERGENIC
3R	7369009	3R_7369009_SNP [dm3] 3R_11543287_SNP [dm6]	G	C	1.120e^-4	0.91	UPSTREAM dpr4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	4090385	X_4090385_INS [dm3] X_4196352_INS [dm6]	T	TCGAGACT	1.152e^-4	0.91	INTRON Fas2
3R	11468350	3R_11468350_SNP [dm3] 3R_15642628_SNP [dm6]	C	T	1.161e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	8354187	3L_8354187_SNP [dm3] 3L_8361087_SNP [dm6]	G	A	1.183e^-4	0.91	UPSTREAM Idh INTERGENIC	TF binding site mE1_TFBS_Trl
3R	25362634	3R_25362634_SNP [dm3] 3R_29536912_SNP [dm6]	A	T	1.188e^-4	0.91	INTERGENIC
X	15170389	X_15170389_SNP [dm3] X_15276356_SNP [dm6]	A	G	1.188e^-4	0.91	INTERGENIC
2L	11831883	2L_11831883_SNP [dm3] 2L_11831883_SNP [dm6]	A	G	1.189e^-4	0.91	INTRON Pde1c
X	11668900	X_11668900_SNP [dm3] X_11774867_SNP [dm6]	C	T	1.191e^-4	0.91	INTRON dy	TF binding site mE1_TFBS_chinmo
X	19241830	X_19241830_SNP [dm3] X_19347797_SNP [dm6]	T	G	1.200e^-4	0.91	UTR_5_PRIME nAChRalpha7 INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_twi
3L	16240803	3L_16240803_SNP [dm3] 3L_16247703_SNP [dm6]	G	C	1.201e^-4	0.91	INTERGENIC
3L	1260217	3L_1260217_SNP [dm3] 3L_1260217_SNP [dm6]	G	A	1.210e^-4	0.91	INTRON CG9134
3L	1260221	3L_1260221_SNP [dm3] 3L_1260221_SNP [dm6]	T	A	1.210e^-4	0.91	INTRON CG9134
X	10279490	X_10279490_INS [dm3] X_10385457_INS [dm6]	T	TATTATCTATTAGGCTAGT...	1.211e^-4	0.91	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	911010	X_911010_DEL [dm3] X_1016977_DEL [dm6]	CAAGT	C	1.212e^-4	0.91	INTRON su_w[a]_ & 1 other
2R	13776802	2R_13776802_SNP [dm3] 2R_17889297_SNP [dm6]	A	G	1.225e^-4	0.91	INTRON Elk & 1 other	TF binding site mE1_TFBS_cad
X	3010015	X_3010015_SNP [dm3] X_3115982_SNP [dm6]	A	C	1.238e^-4	0.91	INTRON kirre
3R	10898100	3R_10898100_SNP [dm3] 3R_15072378_SNP [dm6]	G	C	1.254e^-4	0.91	INTRON dpr9
2L	14086814	2L_14086814_SNP [dm3] 2L_14086814_SNP [dm6]	G	A	1.272e^-4	0.91	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_twi
3R	11468733	3R_11468733_SNP [dm3] 3R_15643011_SNP [dm6]	C	A	1.275e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	22321820	2L_22321820_SNP [dm3] 2L_22321820_SNP [dm6]	A	G	1.286e^-4	0.91	INTRON CG17018
3L	1257563	3L_1257563_SNP [dm3] 3L_1257563_SNP [dm6]	G	A	1.286e^-4	0.91	INTRON CG9134
3L	1257582	3L_1257582_SNP [dm3] 3L_1257582_SNP [dm6]	T	A	1.286e^-4	0.91	INTRON CG9134
3L	1257630	3L_1257630_SNP [dm3] 3L_1257630_SNP [dm6]	A	T	1.286e^-4	0.91	INTRON CG9134
X	10698085	X_10698085_SNP [dm3] X_10804052_SNP [dm6]	C	T	1.287e^-4	0.91	INTRON Imp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	2843217	X_2843217_SNP [dm3] X_2949184_SNP [dm6]	A	C	1.303e^-4	0.91	DOWNSTREAM CG3603 INTRON kirre	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13632229	2R_13632229_SNP [dm3] 2R_17744724_SNP [dm6]	C	T	1.310e^-4	0.91	SYNONYMOUS_CODING Ir54a DOWNSTREAM CG4996 & 1 other	TF binding site mE1_TFBS_sens
2R	16523072	2R_16523072_SNP [dm3] 2R_20635567_SNP [dm6]	G	A	1.311e^-4	0.91	SYNONYMOUS_CODING rig UPSTREAM CG13436	TF binding site mE1_TFBS_cad
3L	9395719	3L_9395719_SNP [dm3] 3L_9402619_SNP [dm6]	C	G	1.319e^-4	0.91	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	15162633	3L_15162633_INS [dm3] 3L_15169533_INS [dm6]	C	CAAATTAC	1.320e^-4	0.91	INTERGENIC
3L	15162634	3L_15162634_INS [dm3] 3L_15169534_INS [dm6]	T	AAATTA	1.320e^-4	0.91	INTERGENIC
3L	14274444	3L_14274444_INS [dm3] 3L_14281344_INS [dm6]	A	AGTATA	1.323e^-4	0.91	INTRON fz
3R	22525650	3R_22525650_SNP [dm3] 3R_26699928_SNP [dm6]	G	T	1.323e^-4	0.91	INTRON amon
3R	24056895	3R_24056895_SNP [dm3] 3R_28231173_SNP [dm6]	G	T	1.323e^-4	0.91	INTRON CG34354
3R	13626266	3R_13626266_SNP [dm3] 3R_17800544_SNP [dm6]	T	A	1.327e^-4	0.91	DOWNSTREAM CG17806 INTRON CG17803
3R	13626283	3R_13626283_SNP [dm3] 3R_17800561_SNP [dm6]	A	T	1.327e^-4	0.91	DOWNSTREAM CG17806 INTRON CG17803
2R	9649891	2R_9649891_SNP [dm3] 2R_13762386_SNP [dm6]	C	T	1.338e^-4	0.91	INTERGENIC
3L	17329933	3L_17329933_SNP [dm3] 3L_17336833_SNP [dm6]	G	C	1.345e^-4	0.91	DOWNSTREAM CG6479 EXON CR44564
X	15166741	X_15166741_SNP [dm3] X_15272708_SNP [dm6]	C	T	1.351e^-4	0.91	UPSTREAM CG9106 INTERGENIC
3L	758749	3L_758749_SNP [dm3] 3L_758749_SNP [dm6]	A	G	1.357e^-4	0.91	INTERGENIC
3L	11522707	3L_11522707_SNP [dm3] 3L_11529607_SNP [dm6]	C	G	1.359e^-4	0.91	INTRON Mob2
3L	1251792	3L_1251792_SNP [dm3] 3L_1251792_SNP [dm6]	C	G	1.378e^-4	0.91	UPSTREAM CG9130 & 1 other DOWNSTREAM CG9129 INTERGENIC
3L	1251801	3L_1251801_SNP [dm3] 3L_1251801_SNP [dm6]	G	A	1.378e^-4	0.91	UPSTREAM CG9130 & 1 other DOWNSTREAM CG9129 INTERGENIC
3L	1251865	3L_1251865_SNP [dm3] 3L_1251865_SNP [dm6]	A	G	1.378e^-4	0.91	UPSTREAM CG9130 & 1 other DOWNSTREAM CG9129 INTERGENIC
3L	1256578	3L_1256578_SNP [dm3] 3L_1256578_SNP [dm6]	G	A	1.378e^-4	0.91	UTR_5_PRIME CG9134 DOWNSTREAM CG9130 & 1 other
3R	13036210	3R_13036210_SNP [dm3] 3R_17210488_SNP [dm6]	C	T	1.390e^-4	0.91	INTERGENIC
3R	24147714	3R_24147714_SNP [dm3] 3R_28321992_SNP [dm6]	C	A	1.399e^-4	0.91	SYNONYMOUS_CODING larp	TF binding site mE1_TFBS_cad
2R	9811974	2R_9811974_SNP [dm3] 2R_13924469_SNP [dm6]	T	C	1.421e^-4	0.91	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	9811997	2R_9811997_SNP [dm3] 2R_13924492_SNP [dm6]	T	A	1.421e^-4	0.91	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	5867295	3L_5867295_SNP [dm3] 3L_5874195_SNP [dm6]	G	A	1.432e^-4	0.91	NON_SYNONYMOUS_CODING CG18586 DOWNSTREAM CG5568
X	987584	X_987584_SNP [dm3] X_1093551_SNP [dm6]	A	T	1.438e^-4	0.91	INTRON CG3655
3L	17008891	3L_17008891_SNP [dm3] 3L_17015791_SNP [dm6]	C	G	1.454e^-4	0.91	UTR_5_PRIME CG6664 UPSTREAM CG7728	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8582774	3R_8582774_SNP [dm3] 3R_12757052_SNP [dm6]	C	T	1.454e^-4	0.91	INTRON beat-Vc	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	21114795	X_21114795_SNP [dm3] X_21243768_SNP [dm6]	C	T	1.468e^-4	0.91	INTRON CG32521
3L	758702	3L_758702_SNP [dm3] 3L_758702_SNP [dm6]	G	A	1.471e^-4	0.91	INTERGENIC
3L	1251933	3L_1251933_SNP [dm3] 3L_1251933_SNP [dm6]	T	C	1.480e^-4	0.91	UPSTREAM CG9130 & 1 other DOWNSTREAM CG9129 INTERGENIC
3R	19716966	3R_19716966_SNP [dm3] 3R_23891244_SNP [dm6]	T	A	1.481e^-4	0.91	UPSTREAM TfIIA-S DOWNSTREAM tbrd-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	15087727	2L_15087727_SNP [dm3] 2L_15087727_SNP [dm6]	T	C	1.486e^-4	0.91	SYNONYMOUS_CODING CG15270
3R	20994253	3R_20994253_SNP [dm3] 3R_25168531_SNP [dm6]	G	A	1.487e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	5211527	2R_5211527_SNP [dm3] 2R_9324022_SNP [dm6]	T	A	1.510e^-4	0.91	INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3768610	3L_3768610_SNP [dm3] 3L_3768610_SNP [dm6]	G	A	1.519e^-4	0.91	INTRON CG32264	TF binding site BDTNP1_TFBS_dl
X	15265972	X_15265972_SNP [dm3] X_15371939_SNP [dm6]	A	G	1.525e^-4	0.91	INTRON acj6
3L	6265941	3L_6265941_SNP [dm3] 3L_6272841_SNP [dm6]	C	G	1.529e^-4	0.91	INTERGENIC
3L	1256636	3L_1256636_SNP [dm3] 3L_1256636_SNP [dm6]	G	A	1.532e^-4	0.91	UTR_5_PRIME CG9134 DOWNSTREAM CG9130 & 1 other
3L	3259060	3L_3259060_INS [dm3] 3L_3259060_INS [dm6]	A	AAATTTAAA	1.536e^-4	0.91	INTRON ckd
2L	11475244	2L_11475244_SNP [dm3] 2L_11475244_SNP [dm6]	T	G	1.548e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk
3L	3823078	3L_3823078_SNP [dm3] 3L_3823078_SNP [dm6]	C	T	1.571e^-4	0.91	INTRON enc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19244050	2R_19244050_SNP [dm3] 2R_23356527_SNP [dm6]	A	G	1.573e^-4	0.91	SYNONYMOUS_CODING CG3500 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	2469572	3L_2469572_SNP [dm3] 3L_2469572_SNP [dm6]	G	T	1.593e^-4	0.91	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12053897	3L_12053897_SNP [dm3] 3L_12060797_SNP [dm6]	C	T	1.603e^-4	0.91	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	12053921	3L_12053921_SNP [dm3] 3L_12060821_SNP [dm6]	C	A	1.603e^-4	0.91	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	3903618	3R_3903618_SNP [dm3] 3R_8077896_SNP [dm6]	A	T	1.610e^-4	0.91	INTRON mAChR-B
3R	3903652	3R_3903652_SNP [dm3] 3R_8077930_SNP [dm6]	G	T	1.610e^-4	0.91	INTRON mAChR-B
3L	1251878	3L_1251878_SNP [dm3] 3L_1251878_SNP [dm6]	T	A	1.610e^-4	0.91	UPSTREAM CG9130 & 1 other DOWNSTREAM CG9129 INTERGENIC
3L	10997517	3L_10997517_SNP [dm3] 3L_11004417_SNP [dm6]	C	T	1.614e^-4	0.91	INTRON klu
3L	10997561	3L_10997561_SNP [dm3] 3L_11004461_SNP [dm6]	C	T	1.614e^-4	0.91	INTRON klu
3R	20663555	3R_20663555_SNP [dm3] 3R_24837833_SNP [dm6]	T	G	1.637e^-4	0.91	INTRON sosie
3R	21538503	3R_21538503_SNP [dm3] 3R_25712781_SNP [dm6]	T	G	1.646e^-4	0.91	INTRON LpR2
3R	21538505	3R_21538505_SNP [dm3] 3R_25712783_SNP [dm6]	G	A	1.646e^-4	0.91	INTRON LpR2
3R	21538513	3R_21538513_SNP [dm3] 3R_25712791_SNP [dm6]	C	T	1.646e^-4	0.91	INTRON LpR2
3R	21538533	3R_21538533_SNP [dm3] 3R_25712811_SNP [dm6]	A	T	1.646e^-4	0.91	INTRON LpR2
3R	21538596	3R_21538596_SNP [dm3] 3R_25712874_SNP [dm6]	A	T	1.646e^-4	0.91	INTRON LpR2
3R	21538654	3R_21538654_SNP [dm3] 3R_25712932_SNP [dm6]	G	A	1.646e^-4	0.91	INTRON LpR2
3R	11341214	3R_11341214_SNP [dm3] 3R_15515492_SNP [dm6]	T	A	1.655e^-4	0.91	INTERGENIC
X	6515745	X_6515745_SNP [dm3] X_6621712_SNP [dm6]	A	T	1.675e^-4	0.91	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1303527	2L_1303527_SNP [dm3] 2L_1303527_SNP [dm6]	A	C	1.688e^-4	0.91	INTERGENIC
3R	25097241	3R_25097241_SNP [dm3] 3R_29271519_SNP [dm6]	T	C	1.692e^-4	0.91	INTERGENIC	regulatory region REDfly_CRMs
2R	6047899	2R_6047899_SNP [dm3] 2R_10160394_SNP [dm6]	T	G	1.721e^-4	0.91	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26755944	3R_26755944_SNP [dm3] 3R_30930222_SNP [dm6]	G	T	1.736e^-4	0.91	UTR_3_PRIME Ptx1 DOWNSTREAM Ptx1
X	5476855	X_5476855_SNP [dm3] X_5582822_SNP [dm6]	C	T	1.742e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11468222	2L_11468222_SNP [dm3] 2L_11468222_SNP [dm6]	G	C	1.753e^-4	0.91	INTERGENIC
3R	8933597	3R_8933597_SNP [dm3] 3R_13107875_SNP [dm6]	T	C	1.756e^-4	0.91	INTRON timeout	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6327665	2R_6327665_SNP [dm3] 2R_10440160_SNP [dm6]	A	T	1.768e^-4	0.91	INTRON Galphao	TF binding site BDTNP1_TFBS_twi
X	10000605	X_10000605_SNP [dm3] X_10106572_SNP [dm6]	A	G	1.773e^-4	0.91	INTRON RhoU
X	8063535	X_8063535_SNP [dm3] X_8169502_SNP [dm6]	A	G	1.773e^-4	0.91	NON_SYNONYMOUS_CODING CG2278 DOWNSTREAM slpr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17166704	3L_17166704_SNP [dm3] 3L_17173604_SNP [dm6]	T	G	1.789e^-4	0.91	INTRON Rbp6
2L	13841983	2L_13841983_SNP [dm3] 2L_13841983_SNP [dm6]	A	C	1.804e^-4	0.91	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3L	13641982	3L_13641982_SNP [dm3] 3L_13648882_SNP [dm6]	G	A	1.817e^-4	0.91	INTRON bru-3
2L	10025454	2L_10025454_SNP [dm3] 2L_10025454_SNP [dm6]	A	G	1.825e^-4	0.91	INTERGENIC
2R	16523028	2R_16523028_SNP [dm3] 2R_20635523_SNP [dm6]	T	A	1.832e^-4	0.91	NON_SYNONYMOUS_CODING rig UPSTREAM CG13436	TF binding site mE1_TFBS_cad
2L	13123911	2L_13123911_SNP [dm3] 2L_13123911_SNP [dm6]	C	T	1.842e^-4	0.91	INTERGENIC
X	6493306	X_6493306_SNP [dm3] X_6599273_SNP [dm6]	C	G	1.844e^-4	0.91	NON_SYNONYMOUS_CODING APC7 UPSTREAM pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	1314536	2L_1314536_SNP [dm3] 2L_1314536_SNP [dm6]	G	A	1.858e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26446997	3R_26446997_SNP [dm3] 3R_30621275_SNP [dm6]	C	T	1.867e^-4	0.91	INTRON CG44954
2R	6544024	2R_6544024_SNP [dm3] 2R_10656519_SNP [dm6]	T	C	1.879e^-4	0.91	DOWNSTREAM CR44452 INTERGENIC
3R	12605546	3R_12605546_SNP [dm3] 3R_16779824_SNP [dm6]	T	C	1.881e^-4	0.91	INTERGENIC
3R	18985093	3R_18985093_SNP [dm3] 3R_23159371_SNP [dm6]	A	T	1.885e^-4	0.91	UPSTREAM VhaAC39-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7537961	2R_7537961_SNP [dm3] 2R_11650456_SNP [dm6]	A	T	1.889e^-4	0.91	INTRON CG9003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	9051433	3R_9051433_SNP [dm3] 3R_13225711_SNP [dm6]	C	T	1.898e^-4	0.91	UTR_3_PRIME Ace INTRON Ace
2R	20231867	2R_20231867_SNP [dm3] 2R_24344344_SNP [dm6]	G	A	1.904e^-4	0.91	SYNONYMOUS_CODING bs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17305756	3L_17305756_SNP [dm3] 3L_17312656_SNP [dm6]	A	T	1.906e^-4	0.91	INTERGENIC
3R	26700105	3R_26700105_SNP [dm3] 3R_30874383_SNP [dm6]	T	C	1.906e^-4	0.91	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9140447	2R_9140447_SNP [dm3] 2R_13252942_SNP [dm6]	A	G	1.909e^-4	0.91	SYNONYMOUS_CODING CG4714	TF binding site mE1_TFBS_cad
2R	9658918	2R_9658918_SNP [dm3] 2R_13771413_SNP [dm6]	T	C	1.909e^-4	0.91	INTRON Cpr50Ca
3R	19716878	3R_19716878_SNP [dm3] 3R_23891156_SNP [dm6]	G	T	1.911e^-4	0.91	UPSTREAM TfIIA-S DOWNSTREAM tbrd-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	21356626	X_21356626_SNP [dm3] X_21485599_SNP [dm6]	G	T	1.912e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16616873	3R_16616873_SNP [dm3] 3R_20791151_SNP [dm6]	C	T	1.932e^-4	0.91	INTRON Syp
3L	1402328	3L_1402328_SNP [dm3] 3L_1402328_SNP [dm6]	G	T	1.947e^-4	0.91	DOWNSTREAM tRNA:E4:62Ad & 2 others INTRON Ptp61F	TF binding site mE1_TFBS_HSA
3L	1257614	3L_1257614_SNP [dm3] 3L_1257614_SNP [dm6]	T	C	1.955e^-4	0.91	INTRON CG9134
3L	1257618	3L_1257618_INS [dm3] 3L_1257618_INS [dm6]	A	AGCAAACTTGTTGTAATTTA...	1.955e^-4	0.91	INTRON CG9134
3R	22525640	3R_22525640_SNP [dm3] 3R_26699918_SNP [dm6]	A	G	1.955e^-4	0.91	INTRON amon
3L	8891620	3L_8891620_SNP [dm3] 3L_8898520_SNP [dm6]	A	G	1.956e^-4	0.91	INTRON TrpA1
X	2843220	X_2843220_DEL [dm3] X_2949187_DEL [dm6]	AGACTAGTTA	A	1.960e^-4	0.91	DOWNSTREAM CG3603 INTRON kirre	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	16747539	3L_16747539_SNP [dm3] 3L_16754439_SNP [dm6]	C	A	1.968e^-4	0.91	INTERGENIC
3L	8921417	3L_8921417_DEL [dm3] 3L_8928317_DEL [dm6]	TTTTTGTGTTATG...	T	1.970e^-4	0.91	INTRON Tsp66E
3L	8921431	3L_8921431_DEL [dm3] 3L_8928331_DEL [dm6]	GT	G	1.970e^-4	0.91	INTRON Tsp66E
3L	8921434	3L_8921434_DEL [dm3] 3L_8928334_DEL [dm6]	TCTTAACTTCA...	T	1.970e^-4	0.91	INTRON Tsp66E
3R	13995495	3R_13995495_SNP [dm3] 3R_18169773_SNP [dm6]	C	G	1.972e^-4	0.91	NON_SYNONYMOUS_CODING PP2A-B' INTRON PP2A-B'	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16145231	3L_16145231_SNP [dm3] 3L_16152131_SNP [dm6]	C	T	1.976e^-4	0.91	INTRON CG5151
X	11670436	X_11670436_SNP [dm3] X_11776403_SNP [dm6]	A	G	1.981e^-4	0.91	INTRON dy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8350983	3R_8350983_SNP [dm3] 3R_12525261_SNP [dm6]	G	T	1.988e^-4	0.91	UPSTREAM Hug INTRON Octbeta3R
2R	17740086	2R_17740086_SNP [dm3] 2R_21852581_SNP [dm6]	T	G	1.989e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_cad
3L	8235069	3L_8235069_SNP [dm3] 3L_8241969_SNP [dm6]	A	T	1.992e^-4	0.91	INTRON Dscam4
3L	3975426	3L_3975426_SNP [dm3] 3L_3975426_SNP [dm6]	T	C	2.010e^-4	0.91	INTERGENIC	regulatory region REDfly_CRMs
3L	3975429	3L_3975429_SNP [dm3] 3L_3975429_SNP [dm6]	G	C	2.010e^-4	0.91	INTERGENIC	regulatory region REDfly_CRMs
X	10000376	X_10000376_SNP [dm3] X_10106343_SNP [dm6]	G	A	2.015e^-4	0.91	INTRON RhoU	TF binding site mE1_TFBS_HSA
3L	1756277	3L_1756277_SNP [dm3] 3L_1756277_SNP [dm6]	C	A	2.020e^-4	0.91	UTR_5_PRIME CG8001 UPSTREAM CG8001 & 1 other	TF binding site mE1_TFBS_cad
2L	18318064	2L_18318064_INS [dm3] 2L_18318064_INS [dm6]	T	TT	2.022e^-4	0.91	INTERGENIC
3L	9766029	3L_9766029_SNP [dm3] 3L_9772929_SNP [dm6]	A	G	2.022e^-4	0.91	INTRON CG8177
2R	11545393	2R_11545393_DEL [dm3] 2R_15657888_DEL [dm6]	GG	G	2.024e^-4	0.91	UTR_3_PRIME fus DOWNSTREAM mir-278 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	1591261	3L_1591261_SNP [dm3] 3L_1591261_SNP [dm6]	G	T	2.034e^-4	0.91	INTRON CG13917
X	6311220	X_6311220_SNP [dm3] X_6417187_SNP [dm6]	C	T	2.037e^-4	0.91	INTERGENIC
3L	8235259	3L_8235259_SNP [dm3] 3L_8242159_SNP [dm6]	A	T	2.040e^-4	0.91	INTRON Dscam4
3L	8234994	3L_8234994_SNP [dm3] 3L_8241894_SNP [dm6]	C	A	2.050e^-4	0.91	INTRON Dscam4
2R	7046586	2R_7046586_SNP [dm3] 2R_11159081_SNP [dm6]	A	G	2.059e^-4	0.91	UPSTREAM shn INTRON CG13229	TF binding site BDTNP1_TFBS_twi
X	999602	X_999602_SNP [dm3] X_1105569_SNP [dm6]	G	A	2.077e^-4	0.91	INTRON CG3655
3L	8698484	3L_8698484_SNP [dm3] 3L_8705384_SNP [dm6]	C	T	2.084e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4051262	2R_4051262_SNP [dm3] 2R_8163757_SNP [dm6]	G	T	2.094e^-4	0.91	UTR_5_PRIME Rs1 UPSTREAM RagC-D DOWNSTREAM CG30373	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5487918	3L_5487918_INS [dm3] 3L_5494818_INS [dm6]	A	AA	2.106e^-4	0.91	UPSTREAM CR44520 INTERGENIC
3L	12547503	3L_12547503_SNP [dm3] 3L_12554403_SNP [dm6]	G	T	2.127e^-4	0.91	INTRON sowah
2L	15886344	2L_15886344_SNP [dm3] 2L_15886344_SNP [dm6]	A	G	2.129e^-4	0.91	INTERGENIC
3R	21485873	3R_21485873_SNP [dm3] 3R_25660151_SNP [dm6]	G	A	2.165e^-4	0.91	INTRON Tnks	TF binding site mE1_TFBS_cad
3R	21486286	3R_21486286_SNP [dm3] 3R_25660564_SNP [dm6]	G	A	2.165e^-4	0.91	INTRON Tnks	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19880414	X_19880414_INS [dm3] X_19986381_INS [dm6]	C	CCACCCTCCC	2.181e^-4	0.91	INTERGENIC
2L	17782861	2L_17782861_SNP [dm3] 2L_17782861_SNP [dm6]	A	G	2.206e^-4	0.91	INTERGENIC
X	6493691	X_6493691_SNP [dm3] X_6599658_SNP [dm6]	C	T	2.225e^-4	0.91	UTR_3_PRIME APC7 UPSTREAM pigs	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	20994237	3R_20994237_SNP [dm3] 3R_25168515_SNP [dm6]	G	C	2.227e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	14596382	3R_14596382_SNP [dm3] 3R_18770660_SNP [dm6]	C	T	2.248e^-4	0.91	INTRON CG7720
3L	11418205	3L_11418205_SNP [dm3] 3L_11425105_SNP [dm6]	G	A	2.251e^-4	0.91	UPSTREAM CG7560 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	6410433	X_6410433_SNP [dm3] X_6516400_SNP [dm6]	A	C	2.268e^-4	0.91	UPSTREAM tRNA:CR32748 INTRON CG42340	TF binding site mE1_TFBS_inv
3L	1092153	3L_1092153_SNP [dm3] 3L_1092153_SNP [dm6]	T	C	2.276e^-4	0.91	INTRON bab1	regulatory region REDfly_CRMs
2L	5973814	2L_5973814_SNP [dm3] 2L_5973814_SNP [dm6]	T	C	2.285e^-4	0.91	INTRON chic
2R	19867527	2R_19867527_SNP [dm3] 2R_23980004_SNP [dm6]	C	G	2.294e^-4	0.91	UTR_5_PRIME Sox14	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9232997	3L_9232997_SNP [dm3] 3L_9239897_SNP [dm6]	T	G	2.298e^-4	0.91	INTERGENIC
3R	13501752	3R_13501752_SNP [dm3] 3R_17676030_SNP [dm6]	A	C	2.298e^-4	0.91	INTRON alt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13568863	2L_13568863_INS [dm3] 2L_13568863_INS [dm6]	C	CTGC	2.328e^-4	0.91	INTRON kuz
2R	6047973	2R_6047973_SNP [dm3] 2R_10160468_SNP [dm6]	C	T	2.331e^-4	0.91	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6048196	2R_6048196_SNP [dm3] 2R_10160691_SNP [dm6]	C	T	2.331e^-4	0.91	INTRON KCNQ	TF binding site mE1_TFBS_HSA
3L	1905242	3L_1905242_SNP [dm3] 3L_1905242_SNP [dm6]	T	A	2.331e^-4	0.91	INTRON CG1887
3R	13037400	3R_13037400_SNP [dm3] 3R_17211678_SNP [dm6]	A	G	2.336e^-4	0.91	INTERGENIC
3L	8531993	3L_8531993_SNP [dm3] 3L_8538893_SNP [dm6]	A	C	2.338e^-4	0.91	DOWNSTREAM ergic53 INTERGENIC
3R	13625309	3R_13625309_SNP [dm3] 3R_17799587_SNP [dm6]	T	A	2.342e^-4	0.91	NON_SYNONYMOUS_CODING CG17803	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8235027	3L_8235027_SNP [dm3] 3L_8241927_SNP [dm6]	G	A	2.346e^-4	0.91	INTRON Dscam4
3L	8235118	3L_8235118_SNP [dm3] 3L_8242018_SNP [dm6]	C	T	2.346e^-4	0.91	INTRON Dscam4
3L	8235214	3L_8235214_SNP [dm3] 3L_8242114_SNP [dm6]	G	A	2.346e^-4	0.91	INTRON Dscam4
3L	8235216	3L_8235216_SNP [dm3] 3L_8242116_SNP [dm6]	T	G	2.346e^-4	0.91	INTRON Dscam4
3L	19190251	3L_19190251_SNP [dm3] 3L_19197151_SNP [dm6]	A	G	2.348e^-4	0.91	INTRON fz2	TF binding site mE1_TFBS_inv
4	468266	4_468266_SNP [dm3] 4_447640_SNP [dm6]	G	C	2.350e^-4	0.91	INTRON CaMKI
4	494822	4_494822_SNP [dm3] 4_474196_SNP [dm6]	A	C	2.350e^-4	0.91	INTRON Asator
3L	429025	3L_429025_SNP [dm3] 3L_429025_SNP [dm6]	C	A	2.364e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1253461	3L_1253461_SNP [dm3] 3L_1253461_SNP [dm6]	G	A	2.365e^-4	0.91	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 UPSTREAM CG9133	TF binding site mE1_TFBS_cad
X	8063471	X_8063471_SNP [dm3] X_8169438_SNP [dm6]	A	T	2.365e^-4	0.91	DOWNSTREAM slpr INTRON CG2278	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20233908	X_20233908_SNP [dm3] X_20362881_SNP [dm6]	G	T	2.371e^-4	0.91	INTERGENIC
3L	758799	3L_758799_SNP [dm3] 3L_758799_SNP [dm6]	A	C	2.379e^-4	0.91	INTERGENIC
3L	1260311	3L_1260311_SNP [dm3] 3L_1260311_SNP [dm6]	T	C	2.391e^-4	0.91	INTRON CG9134
X	5482569	X_5482569_SNP [dm3] X_5588536_SNP [dm6]	G	A	2.398e^-4	0.91	INTERGENIC
3R	21410911	3R_21410911_SNP [dm3] 3R_25585189_SNP [dm6]	G	C	2.411e^-4	0.91	INTRON msi
X	19241847	X_19241847_SNP [dm3] X_19347814_SNP [dm6]	G	A	2.434e^-4	0.91	UTR_5_PRIME nAChRalpha7 INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_twi
2R	16927976	2R_16927976_SNP [dm3] 2R_21040471_SNP [dm6]	A	G	2.442e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13241928	2L_13241928_DEL [dm3] 2L_13241928_DEL [dm6]	CAATTGAC	C	2.452e^-4	0.91	DOWNSTREAM CG5945 EXON CR45330	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17430442	2R_17430442_SNP [dm3] 2R_21542937_SNP [dm6]	G	T	2.453e^-4	0.91	INTRON Egfr
X	4074498	X_4074498_SNP [dm3] X_4180465_SNP [dm6]	T	A	2.455e^-4	0.91	INTRON Fas2	TF binding site mE1_TFBS_inv
X	14048828	X_14048828_SNP [dm3] X_14154795_SNP [dm6]	C	T	2.459e^-4	0.91	INTERGENIC
3R	7732648	3R_7732648_SNP [dm3] 3R_11906926_SNP [dm6]	T	C	2.499e^-4	0.91	INTRON Cad87A
3R	9878603	3R_9878603_SNP [dm3] 3R_14052881_SNP [dm6]	T	A	2.501e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8767218	3L_8767218_SNP [dm3] 3L_8774118_SNP [dm6]	T	G	2.528e^-4	0.91	INTRON Fhos	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	27471286	3R_27471286_DEL [dm3] 3R_31645564_DEL [dm6]	AA	A	2.530e^-4	0.91	INTRON kek6
3R	8863037	3R_8863037_SNP [dm3] 3R_13037315_SNP [dm6]	C	T	2.538e^-4	0.91	SYNONYMOUS_CODING ry	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	17650140	2R_17650140_SNP [dm3] 2R_21762635_SNP [dm6]	C	T	2.553e^-4	0.91	DOWNSTREAM CR43983 INTERGENIC
3L	9551385	3L_9551385_SNP [dm3] 3L_9558285_SNP [dm6]	T	A	2.565e^-4	0.91	INTRON CG42673
2R	7537988	2R_7537988_SNP [dm3] 2R_11650483_SNP [dm6]	A	G	2.569e^-4	0.91	INTRON CG9003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3L	3946629	3L_3946629_SNP [dm3] 3L_3946629_SNP [dm6]	A	T	2.577e^-4	0.91	UTR_3_PRIME CG14982 DOWNSTREAM CG14982
3L	3946634	3L_3946634_SNP [dm3] 3L_3946634_SNP [dm6]	T	A	2.577e^-4	0.91	UTR_3_PRIME CG14982 DOWNSTREAM CG14982
X	9643156	X_9643156_SNP [dm3] X_9749123_SNP [dm6]	T	G	2.585e^-4	0.91	INTRON Sp1	TF binding site BDTNP1_TFBS_dl
2L	20886196	2L_20886196_SNP [dm3] 2L_20886196_SNP [dm6]	T	A	2.595e^-4	0.91	UPSTREAM sky INTRON sky & 1 other	TF binding site mE1_TFBS_Trl
2R	5327178	2R_5327178_SNP [dm3] 2R_9439673_SNP [dm6]	C	G	2.614e^-4	0.91	INTRON ced-6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13985486	3L_13985486_SNP [dm3] 3L_13992386_SNP [dm6]	T	G	2.624e^-4	0.91	INTRON CG17364	TF binding site BDTNP1_TFBS_dl
3L	13985564	3L_13985564_SNP [dm3] 3L_13992464_SNP [dm6]	C	G	2.624e^-4	0.91	INTRON CG17364	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13985662	3L_13985662_INS [dm3] 3L_13992562_INS [dm6]	A	AA	2.624e^-4	0.91	INTRON CG17364	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13985664	3L_13985664_SNP [dm3] 3L_13992564_SNP [dm6]	A	T	2.624e^-4	0.91	INTRON CG17364	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15850770	2R_15850770_SNP [dm3] 2R_19963265_SNP [dm6]	C	A	2.632e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_cad
2R	20206705	2R_20206705_SNP [dm3] 2R_24319182_SNP [dm6]	G	A	2.632e^-4	0.91	INTERGENIC
3L	10041817	3L_10041817_SNP [dm3] 3L_10048717_SNP [dm6]	G	A	2.632e^-4	0.91	INTRON dpr6
3L	12217990	3L_12217990_SNP [dm3] 3L_12224890_SNP [dm6]	G	T	2.632e^-4	0.91	UPSTREAM app INTRON app	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1264707	3L_1264707_SNP [dm3] 3L_1264707_SNP [dm6]	G	C	2.632e^-4	0.91	INTRON CG9134
3L	1621948	3L_1621948_SNP [dm3] 3L_1621948_SNP [dm6]	G	A	2.632e^-4	0.91	SYNONYMOUS_CODING ABCB7	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11668351	X_11668351_INS [dm3] X_11774318_INS [dm6]	C	CCTACCC	2.632e^-4	0.91	INTRON dy	TF binding site mE1_TFBS_chinmo
X	11668806	X_11668806_SNP [dm3] X_11774773_SNP [dm6]	A	C	2.632e^-4	0.91	INTRON dy	TF binding site mE1_TFBS_chinmo
X	11670005	X_11670005_SNP [dm3] X_11775972_SNP [dm6]	A	G	2.632e^-4	0.91	INTRON dy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5973725	2L_5973725_SNP [dm3] 2L_5973725_SNP [dm6]	T	G	2.633e^-4	0.91	INTRON chic
3L	10868611	3L_10868611_SNP [dm3] 3L_10875511_SNP [dm6]	G	C	2.646e^-4	0.91	UTR_3_PRIME tna DOWNSTREAM tna & 1 other
X	9615321	X_9615321_SNP [dm3] X_9721288_SNP [dm6]	C	T	2.648e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	1795087	2L_1795087_SNP [dm3] 2L_1795087_SNP [dm6]	G	A	2.664e^-4	0.91	UPSTREAM Gr22a INTERGENIC
3R	12605598	3R_12605598_SNP [dm3] 3R_16779876_SNP [dm6]	G	C	2.664e^-4	0.91	INTERGENIC
3R	13736325	3R_13736325_SNP [dm3] 3R_17910603_SNP [dm6]	G	T	2.665e^-4	0.91	UPSTREAM CG43445 INTRON Rim
3L	4034144	3L_4034144_SNP [dm3] 3L_4034144_SNP [dm6]	C	A	2.677e^-4	0.91	DOWNSTREAM Gr64d INTRON Gr64d & 1 other EXON CR45042
3L	4034149	3L_4034149_DEL [dm3] 3L_4034149_DEL [dm6]	ACG	A	2.677e^-4	0.91	DOWNSTREAM Gr64d INTRON Gr64d & 1 other EXON CR45042
2R	15920794	2R_15920794_SNP [dm3] 2R_20033289_SNP [dm6]	C	G	2.681e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9659274	2R_9659274_SNP [dm3] 2R_13771769_SNP [dm6]	C	G	2.686e^-4	0.91	INTRON Cpr50Ca
2L	22539386	2L_22539386_SNP [dm3] 2L_22646654_SNP [dm6]	G	T	2.688e^-4	0.91	INTRON CG40006
3L	8235132	3L_8235132_SNP [dm3] 3L_8242032_SNP [dm6]	A	G	2.701e^-4	0.91	INTRON Dscam4
3L	8235153	3L_8235153_SNP [dm3] 3L_8242053_SNP [dm6]	T	C	2.701e^-4	0.91	INTRON Dscam4
3L	8235159	3L_8235159_INS [dm3] 3L_8242059_INS [dm6]	T	TA	2.701e^-4	0.91	INTRON Dscam4
X	7988900	X_7988900_SNP [dm3] X_8094867_SNP [dm6]	T	C	2.707e^-4	0.91	UTR_3_PRIME CG2258 UPSTREAM Ubc-E2H
2L	15742330	2L_15742330_SNP [dm3] 2L_15742330_SNP [dm6]	C	T	2.724e^-4	0.91	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18288600	3L_18288600_SNP [dm3] 3L_18295500_SNP [dm6]	T	C	2.734e^-4	0.91	EXON CR43306	TF binding site mE1_TFBS_Kr mE1_TFBS_sbb
3L	8235337	3L_8235337_SNP [dm3] 3L_8242237_SNP [dm6]	T	A	2.741e^-4	0.91	INTRON Dscam4
3L	8235340	3L_8235340_SNP [dm3] 3L_8242240_SNP [dm6]	T	C	2.741e^-4	0.91	INTRON Dscam4
3L	8235371	3L_8235371_SNP [dm3] 3L_8242271_SNP [dm6]	G	C	2.741e^-4	0.91	INTRON Dscam4
3L	8698485	3L_8698485_SNP [dm3] 3L_8705385_SNP [dm6]	A	G	2.741e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8698724	3L_8698724_SNP [dm3] 3L_8705624_SNP [dm6]	C	T	2.741e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9884137	3R_9884137_SNP [dm3] 3R_14058415_SNP [dm6]	A	G	2.750e^-4	0.91	INTRON foxo
2R	18797888	2R_18797888_SNP [dm3] 2R_22910365_SNP [dm6]	A	T	2.754e^-4	0.91	INTRON nahoda
X	7816015	X_7816015_SNP [dm3] X_7921982_SNP [dm6]	C	G	2.757e^-4	0.91	DOWNSTREAM CG10777 & 1 other INTERGENIC
2L	12404997	2L_12404997_SNP [dm3] 2L_12404997_SNP [dm6]	A	T	2.761e^-4	0.91	UPSTREAM vir-1 INTRON vir-1
2R	5152098	2R_5152098_SNP [dm3] 2R_9264593_SNP [dm6]	T	G	2.769e^-4	0.91	UPSTREAM CG34141 INTRON Pkn
3L	19177077	3L_19177077_SNP [dm3] 3L_19183977_SNP [dm6]	C	G	2.771e^-4	0.91	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	8235112	3L_8235112_SNP [dm3] 3L_8242012_SNP [dm6]	A	T	2.791e^-4	0.91	INTRON Dscam4
3L	15286797	3L_15286797_SNP [dm3] 3L_15293697_SNP [dm6]	A	G	2.792e^-4	0.91	INTERGENIC
X	4090416	X_4090416_SNP [dm3] X_4196383_SNP [dm6]	A	G	2.793e^-4	0.91	INTRON Fas2
3R	8555216	3R_8555216_SNP [dm3] 3R_12729494_SNP [dm6]	T	A	2.799e^-4	0.91	INTERGENIC
X	7110662	X_7110662_INS [dm3] X_7216629_INS [dm6]	G	GATGCTG	2.823e^-4	0.91	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_twi
X	2842891	X_2842891_SNP [dm3] X_2948858_SNP [dm6]	T	C	2.847e^-4	0.91	SYNONYMOUS_CODING CG3603 INTRON kirre	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	9951802	3R_9951802_SNP [dm3] 3R_14126080_SNP [dm6]	A	T	2.849e^-4	0.91	UPSTREAM 140up INTRON RpII140	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6052114	2R_6052114_SNP [dm3] 2R_10164609_SNP [dm6]	T	C	2.856e^-4	0.91	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10999004	3L_10999004_SNP [dm3] 3L_11005904_SNP [dm6]	C	G	2.881e^-4	0.91	INTRON klu
X	12054141	X_12054141_SNP [dm3] X_12160108_SNP [dm6]	G	A	2.881e^-4	0.91	INTRON Ten-a
3L	16740978	3L_16740978_SNP [dm3] 3L_16747878_SNP [dm6]	T	A	2.884e^-4	0.91	INTERGENIC
3L	3975427	3L_3975427_SNP [dm3] 3L_3975427_SNP [dm6]	T	A	2.896e^-4	0.91	INTERGENIC	regulatory region REDfly_CRMs
2L	22323256	2L_22323256_SNP [dm3] 2L_22323256_SNP [dm6]	T	C	2.912e^-4	0.91	INTRON CG17018
3R	24836955	3R_24836955_SNP [dm3] 3R_29011233_SNP [dm6]	G	A	2.933e^-4	0.91	INTRON wat
3L	17652858	3L_17652858_DEL [dm3] 3L_17659758_DEL [dm6]	AA	A	2.936e^-4	0.91	DOWNSTREAM Crtc INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18291719	3L_18291719_SNP [dm3] 3L_18298619_SNP [dm6]	A	G	2.963e^-4	0.91	DOWNSTREAM CG13700 INTERGENIC
4	492328	4_492328_SNP [dm3] 4_471702_SNP [dm6]	A	C	2.974e^-4	0.91	UTR_3_PRIME Asator DOWNSTREAM pncr013:4
2R	7870083	2R_7870083_SNP [dm3] 2R_11982578_SNP [dm6]	C	T	2.975e^-4	0.91	SYNONYMOUS_CODING CG33145 DOWNSTREAM RnrS	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7872148	2R_7872148_SNP [dm3] 2R_11984643_SNP [dm6]	C	A	2.975e^-4	0.91	INTRON RnrS	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13627900	3R_13627900_SNP [dm3] 3R_17802178_SNP [dm6]	C	A	2.978e^-4	0.91	SYNONYMOUS_CODING CG17806 UPSTREAM CG17803	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	13625553	3R_13625553_SNP [dm3] 3R_17799831_SNP [dm6]	G	A	2.979e^-4	0.91	SYNONYMOUS_CODING CG17803	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6206046	2L_6206046_SNP [dm3] 2L_6206046_SNP [dm6]	A	C	2.994e^-4	0.91	INTRON CG34380	TF binding site BDTNP1_TFBS_da
2L	6206093	2L_6206093_SNP [dm3] 2L_6206093_SNP [dm6]	C	T	3.002e^-4	0.91	INTRON CG34380	TF binding site BDTNP1_TFBS_da
3R	13037051	3R_13037051_SNP [dm3] 3R_17211329_SNP [dm6]	A	G	3.009e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15225162	2L_15225162_SNP [dm3] 2L_15225162_SNP [dm6]	T	A	3.027e^-4	0.91	INTERGENIC
X	13611993	X_13611993_SNP [dm3] X_13717960_SNP [dm6]	G	T	3.027e^-4	0.91	DOWNSTREAM CG9941 & 1 other INTRON CG9940	TF binding site BDTNP1_TFBS_dl
2R	5908229	2R_5908229_SNP [dm3] 2R_10020724_SNP [dm6]	A	C	3.033e^-4	0.91	INTRON Pka-R2
X	14509334	X_14509334_SNP [dm3] X_14615301_SNP [dm6]	G	A	3.042e^-4	0.91	INTRON NetA
2L	17612232	2L_17612232_SNP [dm3] 2L_17612232_SNP [dm6]	T	G	3.043e^-4	0.91	INTERGENIC
2L	11468478	2L_11468478_SNP [dm3] 2L_11468478_SNP [dm6]	C	T	3.054e^-4	0.91	INTERGENIC
3L	18309888	3L_18309888_SNP [dm3] 3L_18316788_SNP [dm6]	T	A	3.062e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14342976	2L_14342976_SNP [dm3] 2L_14342976_SNP [dm6]	G	C	3.082e^-4	0.91	SYNONYMOUS_CODING CG33090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21363332	X_21363332_SNP [dm3] X_21492305_SNP [dm6]	A	T	3.085e^-4	0.91	INTERGENIC
X	980834	X_980834_SNP [dm3] X_1086801_SNP [dm6]	C	T	3.117e^-4	0.91	INTRON CR44779 & 1 other EXON CR44779
2L	14664146	2L_14664146_SNP [dm3] 2L_14664146_SNP [dm6]	G	T	3.134e^-4	0.91	INTRON osp
3L	7255731	3L_7255731_SNP [dm3] 3L_7262631_SNP [dm6]	G	A	3.138e^-4	0.91	INTRON CG14830
3R	9870142	3R_9870142_SNP [dm3] 3R_14044420_SNP [dm6]	T	A	3.148e^-4	0.91	DOWNSTREAM tRNA:S2b:88A INTERGENIC
X	4556762	X_4556762_SNP [dm3] X_4662729_SNP [dm6]	T	C	3.163e^-4	0.91	INTRON CG3009
3R	11205706	3R_11205706_SNP [dm3] 3R_15379984_SNP [dm6]	T	A	3.168e^-4	0.91	INTRON Rbp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7709624	3L_7709624_SNP [dm3] 3L_7716524_SNP [dm6]	A	G	3.168e^-4	0.91	UPSTREAM Ank2 INTRON CG32373 & 1 other
3L	7813595	3L_7813595_SNP [dm3] 3L_7820495_SNP [dm6]	T	A	3.172e^-4	0.91	INTRON Pdp1
3L	3785765	3L_3785765_SNP [dm3] 3L_3785765_SNP [dm6]	T	G	3.173e^-4	0.91	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	16168742	2R_16168742_SNP [dm3] 2R_20281237_SNP [dm6]	A	G	3.191e^-4	0.91	UPSTREAM CG9090 DOWNSTREAM CG16868 INTERGENIC
2R	16168747	2R_16168747_SNP [dm3] 2R_20281242_SNP [dm6]	G	A	3.191e^-4	0.91	UPSTREAM CG9090 DOWNSTREAM CG16868 INTERGENIC
2R	20485712	2R_20485712_SNP [dm3] 2R_24598189_SNP [dm6]	T	G	3.203e^-4	0.91	NON_SYNONYMOUS_CODING CG13587 DOWNSTREAM pio & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6258807	3L_6258807_SNP [dm3] 3L_6265707_SNP [dm6]	G	C	3.203e^-4	0.91	INTERGENIC
2R	1823967	2R_1823967_SNP [dm3] 2R_5936462_SNP [dm6]	A	G	3.210e^-4	0.91	UPSTREAM CR44126 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20886250	2L_20886250_SNP [dm3] 2L_20886250_SNP [dm6]	T	G	3.216e^-4	0.91	UPSTREAM sky INTRON sky & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	27457511	3R_27457511_DEL [dm3] 3R_31631789_DEL [dm6]	TT	C	3.219e^-4	0.91	INTRON kek6
2R	9649871	2R_9649871_SNP [dm3] 2R_13762366_SNP [dm6]	A	T	3.221e^-4	0.91	INTERGENIC
2R	10020439	2R_10020439_SNP [dm3] 2R_14132934_SNP [dm6]	T	C	3.223e^-4	0.91	INTRON Prosap	TF binding site mE1_TFBS_inv
2R	18988728	2R_18988728_SNP [dm3] 2R_23101205_SNP [dm6]	C	T	3.228e^-4	0.91	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC
2R	8873076	2R_8873076_SNP [dm3] 2R_12985571_SNP [dm6]	G	T	3.232e^-4	0.91	EXON CR44339	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	4916416	3L_4916416_SNP [dm3] 3L_4916416_SNP [dm6]	C	T	3.240e^-4	0.91	INTRON Rh50
2R	9612562	2R_9612562_SNP [dm3] 2R_13725057_SNP [dm6]	C	A	3.242e^-4	0.91	INTRON fas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14553620	3L_14553620_SNP [dm3] 3L_14560520_SNP [dm6]	A	C	3.246e^-4	0.91	NON_SYNONYMOUS_CODING Lk INTRON CG34039 EXON CR44843	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	17141443	3L_17141443_SNP [dm3] 3L_17148343_SNP [dm6]	T	C	3.255e^-4	0.91	UPSTREAM Rbp6 INTRON Rbp6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	16170741	2R_16170741_SNP [dm3] 2R_20283236_SNP [dm6]	G	A	3.255e^-4	0.91	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16170759	2R_16170759_SNP [dm3] 2R_20283254_SNP [dm6]	T	C	3.255e^-4	0.91	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8715261	3R_8715261_SNP [dm3] 3R_12889539_SNP [dm6]	C	T	3.256e^-4	0.91	INTERGENIC
X	15167521	X_15167521_SNP [dm3] X_15273488_SNP [dm6]	G	A	3.256e^-4	0.91	INTERGENIC
2R	15012031	2R_15012031_SNP [dm3] 2R_19124526_SNP [dm6]	G	T	3.267e^-4	0.91	INTRON CG15117
3R	13626942	3R_13626942_SNP [dm3] 3R_17801220_SNP [dm6]	T	A	3.268e^-4	0.91	UTR_5_PRIME CG17803 DOWNSTREAM CG17806
3R	13037076	3R_13037076_SNP [dm3] 3R_17211354_SNP [dm6]	C	G	3.268e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11897171	2R_11897171_SNP [dm3] 2R_16009666_SNP [dm6]	G	A	3.282e^-4	0.91	SYNONYMOUS_CODING CG8388 INTRON CG8389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	6047998	2R_6047998_SNP [dm3] 2R_10160493_SNP [dm6]	T	C	3.284e^-4	0.91	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6048001	2R_6048001_SNP [dm3] 2R_10160496_SNP [dm6]	T	C	3.284e^-4	0.91	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6048003	2R_6048003_SNP [dm3] 2R_10160498_SNP [dm6]	A	T	3.284e^-4	0.91	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18291720	3L_18291720_SNP [dm3] 3L_18298620_SNP [dm6]	C	T	3.324e^-4	0.91	DOWNSTREAM CG13700 INTERGENIC
2R	10316433	2R_10316433_SNP [dm3] 2R_14428928_SNP [dm6]	A	G	3.333e^-4	0.91	INTRON phyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20483704	2R_20483704_SNP [dm3] 2R_24596181_SNP [dm6]	C	T	3.334e^-4	0.91	SYNONYMOUS_CODING pio	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6669265	3L_6669265_SNP [dm3] 3L_6676165_SNP [dm6]	A	T	3.346e^-4	0.91	INTERGENIC
3R	17060694	3R_17060694_SNP [dm3] 3R_21234972_SNP [dm6]	A	G	3.352e^-4	0.91	INTRON e	regulatory region REDfly_CRMs
3L	1174003	3L_1174003_SNP [dm3] 3L_1174003_SNP [dm6]	A	G	3.358e^-4	0.91	SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14542753	X_14542753_DEL [dm3] X_14648720_DEL [dm6]	ATAA	A	3.361e^-4	0.91	INTRON NetA	TF binding site BDTNP1_TFBS_twi
3L	19185599	3L_19185599_SNP [dm3] 3L_19192499_SNP [dm6]	A	T	3.362e^-4	0.91	INTRON fz2
2R	18279242	2R_18279242_SNP [dm3] 2R_22391737_SNP [dm6]	C	T	3.363e^-4	0.91	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6758541	2L_6758541_SNP [dm3] 2L_6758541_SNP [dm6]	A	G	3.376e^-4	0.91	SYNONYMOUS_CODING CG11322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15337907	2L_15337907_SNP [dm3] 2L_15337907_SNP [dm6]	G	C	3.394e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_cad
2L	15337918	2L_15337918_SNP [dm3] 2L_15337918_SNP [dm6]	A	T	3.394e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_cad
2L	15337919	2L_15337919_DEL [dm3] 2L_15337919_DEL [dm6]	TA	T	3.394e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_cad
2L	15502818	2L_15502818_SNP [dm3] 2L_15502818_SNP [dm6]	T	C	3.394e^-4	0.91	SYNONYMOUS_CODING lace	TF binding site mE1_TFBS_HSA
3R	25032787	3R_25032787_SNP [dm3] 3R_29207065_SNP [dm6]	G	A	3.413e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12710993	3L_12710993_SNP [dm3] 3L_12717893_SNP [dm6]	A	T	3.416e^-4	0.91	INTERGENIC
3R	16090532	3R_16090532_SNP [dm3] 3R_20264810_SNP [dm6]	G	T	3.421e^-4	0.91	INTRON cic
3L	12856247	3L_12856247_SNP [dm3] 3L_12863147_SNP [dm6]	A	C	3.456e^-4	0.91	UPSTREAM CG10943 INTERGENIC
3L	8919690	3L_8919690_INS [dm3] 3L_8926590_INS [dm6]	T	TTTGTGTTT	3.466e^-4	0.91	INTRON Tsp66E
3L	12371008	3L_12371008_SNP [dm3] 3L_12377908_SNP [dm6]	T	C	3.469e^-4	0.91	INTRON Ncc69
3R	14376277	3R_14376277_SNP [dm3] 3R_18550555_SNP [dm6]	A	G	3.473e^-4	0.91	INTERGENIC
2L	5885434	2L_5885434_SNP [dm3] 2L_5885434_SNP [dm6]	C	G	3.475e^-4	0.91	UTR_3_PRIME CG43185 UPSTREAM Sfp26Ac & 1 other
2L	5885435	2L_5885435_SNP [dm3] 2L_5885435_SNP [dm6]	G	A	3.475e^-4	0.91	UTR_3_PRIME CG43185 UPSTREAM Sfp26Ac & 1 other
X	17019634	X_17019634_DEL [dm3] X_17125601_DEL [dm6]	AAACGGTTTA	A	3.480e^-4	0.91	UPSTREAM CG5004 INTRON CG5004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	17019710	X_17019710_DEL [dm3] X_17125677_DEL [dm6]	AA	A	3.480e^-4	0.91	UPSTREAM CG5004 INTRON CG5004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	910524	X_910524_SNP [dm3] X_1016491_SNP [dm6]	A	C	3.485e^-4	0.91	INTRON su_w[a]_ & 1 other
3R	10900613	3R_10900613_SNP [dm3] 3R_15074891_SNP [dm6]	A	G	3.488e^-4	0.91	INTRON dpr9
X	1010030	X_1010030_SNP [dm3] X_1115997_SNP [dm6]	A	G	3.530e^-4	0.91	INTRON CG3655
3L	16747598	3L_16747598_SNP [dm3] 3L_16754498_SNP [dm6]	C	T	3.542e^-4	0.91	UPSTREAM CG42852 INTERGENIC
X	5814695	X_5814695_SNP [dm3] X_5920662_SNP [dm6]	A	C	3.543e^-4	0.91	INTRON CG3726
3L	20137240	3L_20137240_SNP [dm3] 3L_20144140_SNP [dm6]	A	T	3.549e^-4	0.91	INTERGENIC
3L	3946670	3L_3946670_SNP [dm3] 3L_3946670_SNP [dm6]	G	T	3.562e^-4	0.91	UTR_3_PRIME CG14982 DOWNSTREAM CG14982
2R	16170747	2R_16170747_SNP [dm3] 2R_20283242_SNP [dm6]	T	C	3.563e^-4	0.91	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
4	508638	4_508638_SNP [dm3] 4_488012_SNP [dm6]	C	G	3.567e^-4	0.91	INTRON Asator	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	13625353	3R_13625353_SNP [dm3] 3R_17799631_SNP [dm6]	G	A	3.595e^-4	0.91	SPLICE_SITE_REGION CG17803 INTRON CG17803	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7628133	3L_7628133_DEL [dm3] 3L_7635033_DEL [dm6]	TT	T	3.603e^-4	0.91	INTRON CG33275	TF binding site mE1_TFBS_HSA
X	13164836	X_13164836_SNP [dm3] X_13270803_SNP [dm6]	C	A	3.613e^-4	0.91	INTRON HDAC4
2R	7625480	2R_7625480_SNP [dm3] 2R_11737975_SNP [dm6]	A	C	3.628e^-4	0.91	INTERGENIC
3L	17778728	3L_17778728_SNP [dm3] 3L_17785628_SNP [dm6]	C	G	3.639e^-4	0.91	UPSTREAM CR44668 INTERGENIC
3L	6669303	3L_6669303_SNP [dm3] 3L_6676203_SNP [dm6]	T	C	3.643e^-4	0.91	INTERGENIC
3L	8705095	3L_8705095_SNP [dm3] 3L_8711995_SNP [dm6]	T	C	3.643e^-4	0.91	INTERGENIC	regulatory region REDfly_CRMs
2L	5885453	2L_5885453_SNP [dm3] 2L_5885453_SNP [dm6]	A	G	3.650e^-4	0.91	UTR_3_PRIME CG43185 UPSTREAM Sfp26Ac & 1 other
3L	14511518	3L_14511518_SNP [dm3] 3L_14518418_SNP [dm6]	T	C	3.650e^-4	0.91	NON_SYNONYMOUS_CODING CG9592 INTRON bbg
X	2842912	X_2842912_SNP [dm3] X_2948879_SNP [dm6]	A	C	3.657e^-4	0.91	SYNONYMOUS_CODING CG3603 INTRON kirre	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	21089591	3R_21089591_SNP [dm3] 3R_25263869_SNP [dm6]	T	C	3.666e^-4	0.91	SYNONYMOUS_CODING Aats-gln DOWNSTREAM CG11858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7370153	2R_7370153_SNP [dm3] 2R_11482648_SNP [dm6]	T	G	3.678e^-4	0.91	INTRON inv
X	3779260	X_3779260_SNP [dm3] X_3885227_SNP [dm6]	T	A	3.683e^-4	0.91	INTRON CG15239
3L	18414061	3L_18414061_SNP [dm3] 3L_18420961_SNP [dm6]	C	T	3.689e^-4	0.91	INTERGENIC
2R	7893835	2R_7893835_SNP [dm3] 2R_12006330_SNP [dm6]	T	C	3.691e^-4	0.91	INTRON otk	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	15930043	2R_15930043_SNP [dm3] 2R_20042538_SNP [dm6]	A	G	3.696e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	17019569	X_17019569_DEL [dm3] X_17125536_DEL [dm6]	AA	A	3.710e^-4	0.91	SPLICE_SITE_REGION CG5004 UTR_5_PRIME CG5004 UPSTREAM CG5004 INTRON CG5004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	758818	3L_758818_SNP [dm3] 3L_758818_SNP [dm6]	T	C	3.718e^-4	0.91	INTERGENIC
X	925420	X_925420_SNP [dm3] X_1031387_SNP [dm6]	C	T	3.738e^-4	0.91	SYNONYMOUS_CODING CG33082 UPSTREAM CG14630 & 1 other INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14507004	3L_14507004_SNP [dm3] 3L_14513904_SNP [dm6]	T	A	3.745e^-4	0.91	INTRON bbg	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_bab1
X	4074469	X_4074469_SNP [dm3] X_4180436_SNP [dm6]	C	A	3.763e^-4	0.91	INTRON Fas2	TF binding site mE1_TFBS_inv
3L	1598430	3L_1598430_SNP [dm3] 3L_1598430_SNP [dm6]	T	A	3.764e^-4	0.91	INTRON CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1598438	3L_1598438_SNP [dm3] 3L_1598438_SNP [dm6]	A	T	3.764e^-4	0.91	INTRON CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10859462	3L_10859462_SNP [dm3] 3L_10866362_SNP [dm6]	T	A	3.776e^-4	0.91	INTRON tna
3L	12974905	3L_12974905_SNP [dm3] 3L_12981805_SNP [dm6]	C	T	3.779e^-4	0.91	INTERGENIC
3R	22935058	3R_22935058_SNP [dm3] 3R_27109336_SNP [dm6]	C	T	3.780e^-4	0.91	INTRON gb EXON CR45209
2L	767580	2L_767580_SNP [dm3] 2L_767580_SNP [dm6]	A	G	3.808e^-4	0.91	INTERGENIC
2L	767623	2L_767623_SNP [dm3] 2L_767623_SNP [dm6]	C	A	3.808e^-4	0.91	INTERGENIC
2L	767635	2L_767635_SNP [dm3] 2L_767635_SNP [dm6]	A	G	3.808e^-4	0.91	INTERGENIC
3R	8715260	3R_8715260_SNP [dm3] 3R_12889538_SNP [dm6]	C	T	3.823e^-4	0.91	INTERGENIC
2R	17313309	2R_17313309_SNP [dm3] 2R_21425804_SNP [dm6]	C	T	3.829e^-4	0.91	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12432353	X_12432353_SNP [dm3] X_12538320_SNP [dm6]	G	A	3.839e^-4	0.91	INTRON CG43921
X	12432355	X_12432355_SNP [dm3] X_12538322_SNP [dm6]	G	A	3.839e^-4	0.91	INTRON CG43921
3L	887704	3L_887704_SNP [dm3] 3L_887704_SNP [dm6]	A	G	3.857e^-4	0.91	UPSTREAM CG32479 INTRON CG32479
2R	6981149	2R_6981149_SNP [dm3] 2R_11093644_SNP [dm6]	T	A	3.865e^-4	0.91	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4165461	2R_4165461_SNP [dm3] 2R_8277956_SNP [dm6]	T	C	3.875e^-4	0.91	EXON CR44280
3R	8578318	3R_8578318_SNP [dm3] 3R_12752596_SNP [dm6]	A	G	3.882e^-4	0.91	SYNONYMOUS_CODING beat-Vc
3R	8578327	3R_8578327_SNP [dm3] 3R_12752605_SNP [dm6]	T	C	3.882e^-4	0.91	SYNONYMOUS_CODING beat-Vc
3L	13631806	3L_13631806_SNP [dm3] 3L_13638706_SNP [dm6]	T	A	3.906e^-4	0.91	INTRON bru-3
2L	19701592	2L_19701592_SNP [dm3] 2L_19701592_SNP [dm6]	G	A	3.906e^-4	0.91	SYNONYMOUS_CODING Lar UPSTREAM scw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8436278	3R_8436278_SNP [dm3] 3R_12610556_SNP [dm6]	C	T	3.924e^-4	0.91	INTERGENIC
3L	1257542	3L_1257542_INS [dm3] 3L_1257542_INS [dm6]	C	CTTAATGTGGAC...	3.926e^-4	0.91	INTRON CG9134
3L	3141914	3L_3141914_SNP [dm3] 3L_3141914_SNP [dm6]	C	T	3.935e^-4	0.91	INTRON CG11537	TF binding site mE1_TFBS_HSA
X	9043962	X_9043962_SNP [dm3] X_9149929_SNP [dm6]	G	A	3.945e^-4	0.91	SYNONYMOUS_CODING dalao UPSTREAM fh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2207396	3L_2207396_SNP [dm3] 3L_2207396_SNP [dm6]	T	A	3.967e^-4	0.91	INTERGENIC
3R	13560051	3R_13560051_SNP [dm3] 3R_17734329_SNP [dm6]	T	A	3.979e^-4	0.91	UTR_3_PRIME CG14321
3L	18291728	3L_18291728_SNP [dm3] 3L_18298628_SNP [dm6]	G	A	3.982e^-4	0.91	DOWNSTREAM CG13700 INTERGENIC
3L	18006015	3L_18006015_SNP [dm3] 3L_18012915_SNP [dm6]	G	A	4.002e^-4	0.91	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6367282	3L_6367282_SNP [dm3] 3L_6374182_SNP [dm6]	G	A	4.028e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16108150	2L_16108150_SNP [dm3] 2L_16108150_SNP [dm6]	C	G	4.036e^-4	0.91	INTERGENIC
3R	24171589	3R_24171589_SNP [dm3] 3R_28345867_SNP [dm6]	G	A	4.038e^-4	0.91	DOWNSTREAM Moca-cyp INTERGENIC
3R	10407316	3R_10407316_SNP [dm3] 3R_14581594_SNP [dm6]	G	A	4.044e^-4	0.91	INTRON stumps
X	7988821	X_7988821_SNP [dm3] X_8094788_SNP [dm6]	G	A	4.048e^-4	0.91	UTR_3_PRIME CG2258 UPSTREAM Ubc-E2H	TF binding site mE1_TFBS_HSA
2R	15489983	2R_15489983_SNP [dm3] 2R_19602478_SNP [dm6]	G	A	4.050e^-4	0.91	UPSTREAM CR44473 INTRON sm
2R	16865039	2R_16865039_SNP [dm3] 2R_20977534_SNP [dm6]	C	T	4.051e^-4	0.91	UTR_3_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	6247944	3L_6247944_SNP [dm3] 3L_6254844_SNP [dm6]	C	T	4.058e^-4	0.91	INTRON Best2
3R	25465344	3R_25465344_SNP [dm3] 3R_29639622_SNP [dm6]	A	G	4.059e^-4	0.91	INTRON Dop1R2
3R	13035257	3R_13035257_SNP [dm3] 3R_17209535_SNP [dm6]	C	T	4.071e^-4	0.91	INTERGENIC
3L	8499842	3L_8499842_SNP [dm3] 3L_8506742_SNP [dm6]	G	C	4.079e^-4	0.91	DOWNSTREAM ZC3H3 INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18291725	3L_18291725_SNP [dm3] 3L_18298625_SNP [dm6]	T	C	4.084e^-4	0.91	DOWNSTREAM CG13700 INTERGENIC
3L	3829307	3L_3829307_INS [dm3] 3L_3829307_INS [dm6]	G	GATG	4.086e^-4	0.91	DOWNSTREAM Rdh INTRON enc
2R	11178627	2R_11178627_SNP [dm3] 2R_15291122_SNP [dm6]	T	C	4.093e^-4	0.91	START_GAINED Trpm UTR_5_PRIME Trpm INTRON Trpm
4	507033	4_507033_SNP [dm3] 4_486407_SNP [dm6]	G	A	4.093e^-4	0.91	UPSTREAM Asator INTRON Asator	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	14761358	3R_14761358_SNP [dm3] 3R_18935636_SNP [dm6]	T	G	4.107e^-4	0.91	INTRON CG42613
X	8190693	X_8190693_SNP [dm3] X_8296660_SNP [dm6]	G	T	4.111e^-4	0.91	INTRON nAChRalpha3
2R	17901220	2R_17901220_DEL [dm3] 2R_22013715_DEL [dm6]	AA	A	4.112e^-4	0.91	INTRON CG34370
2R	2395379	2R_2395379_SNP [dm3] 2R_6507874_SNP [dm6]	T	C	4.118e^-4	0.91	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	2395411	2R_2395411_SNP [dm3] 2R_6507906_SNP [dm6]	T	C	4.118e^-4	0.91	DOWNSTREAM CR45127 INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	21538518	3R_21538518_SNP [dm3] 3R_25712796_SNP [dm6]	T	C	4.143e^-4	0.91	INTRON LpR2
2R	20501244	2R_20501244_SNP [dm3] 2R_24613721_SNP [dm6]	T	A	4.160e^-4	0.91	NON_SYNONYMOUS_CODING CG3608 INTRON CG4741
3R	20283228	3R_20283228_SNP [dm3] 3R_24457506_SNP [dm6]	G	C	4.169e^-4	0.91	UPSTREAM nAChRalpha1 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	19128834	2R_19128834_SNP [dm3] 2R_23241311_SNP [dm6]	T	A	4.180e^-4	0.91	INTERGENIC
3R	10897951	3R_10897951_SNP [dm3] 3R_15072229_SNP [dm6]	C	T	4.189e^-4	0.91	UTR_5_PRIME dpr9
3R	10897989	3R_10897989_SNP [dm3] 3R_15072267_SNP [dm6]	C	G	4.189e^-4	0.91	SPLICE_SITE_REGION dpr9 INTRON dpr9
2L	5240458	2L_5240458_SNP [dm3] 2L_5240458_SNP [dm6]	C	G	4.225e^-4	0.91	UPSTREAM tRNA:CR31971 DOWNSTREAM tRNA:CR31914 INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
3R	26603280	3R_26603280_SNP [dm3] 3R_30777558_SNP [dm6]	T	A	4.226e^-4	0.91	INTRON zfh1	TF binding site mE1_TFBS_chinmo
2L	5240754	2L_5240754_SNP [dm3] 2L_5240754_SNP [dm6]	T	C	4.230e^-4	0.91	UPSTREAM tRNA:CR31971 DOWNSTREAM tRNA:CR31914 INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	888188	2L_888188_SNP [dm3] 2L_888188_SNP [dm6]	C	T	4.232e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	8115198	X_8115198_SNP [dm3] X_8221165_SNP [dm6]	C	G	4.247e^-4	0.91	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7931338	3L_7931338_SNP [dm3] 3L_7938238_SNP [dm6]	A	T	4.254e^-4	0.91	DOWNSTREAM Srp9 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	920146	X_920146_DEL [dm3] X_1026113_DEL [dm6]	GGG	G	4.258e^-4	0.91	UPSTREAM CG3021 INTRON su_w[a]_ & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
X	936558	X_936558_SNP [dm3] X_1042525_SNP [dm6]	C	A	4.258e^-4	0.91	UTR_5_PRIME su_w[a]_ UTR_3_PRIME su_w[a]_ INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_sens
X	936560	X_936560_SNP [dm3] X_1042527_SNP [dm6]	C	T	4.258e^-4	0.91	UTR_5_PRIME su_w[a]_ UTR_3_PRIME su_w[a]_ INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_sens
3R	13625574	3R_13625574_SNP [dm3] 3R_17799852_SNP [dm6]	A	C	4.272e^-4	0.91	SYNONYMOUS_CODING CG17803	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10020344	2R_10020344_SNP [dm3] 2R_14132839_SNP [dm6]	C	T	4.275e^-4	0.91	INTRON Prosap	TF binding site mE1_TFBS_inv
2R	10020345	2R_10020345_SNP [dm3] 2R_14132840_SNP [dm6]	C	T	4.275e^-4	0.91	INTRON Prosap	TF binding site mE1_TFBS_inv
2L	20555888	2L_20555888_INS [dm3] 2L_20555888_INS [dm6]	C	CC	4.278e^-4	0.91	INTERGENIC
X	6926643	X_6926643_INS [dm3] X_7032610_INS [dm6]	T	TT	4.315e^-4	0.91	INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19184461	3L_19184461_SNP [dm3] 3L_19191361_SNP [dm6]	C	T	4.317e^-4	0.91	INTRON fz2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5773964	2L_5773964_SNP [dm3] 2L_5773964_SNP [dm6]	A	T	4.356e^-4	0.91	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5773968	2L_5773968_DEL [dm3] 2L_5773968_DEL [dm6]	TTA	T	4.356e^-4	0.91	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	889771	3L_889771_SNP [dm3] 3L_889771_SNP [dm6]	T	C	4.357e^-4	0.91	SYNONYMOUS_CODING CG32479 UPSTREAM snoRNA:CG32479-b	TF binding site mE1_TFBS_chinmo
3R	9677552	3R_9677552_SNP [dm3] 3R_13851830_SNP [dm6]	G	A	4.361e^-4	0.91	INTERGENIC
3L	8702723	3L_8702723_SNP [dm3] 3L_8709623_SNP [dm6]	A	G	4.370e^-4	0.91	INTERGENIC	regulatory region REDfly_CRMs
2L	7414562	2L_7414562_SNP [dm3] 2L_7414562_SNP [dm6]	T	C	4.383e^-4	0.91	SYNONYMOUS_CODING chm
X	6248771	X_6248771_SNP [dm3] X_6354738_SNP [dm6]	T	C	4.384e^-4	0.91	INTRON kdn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	910647	X_910647_SNP [dm3] X_1016614_SNP [dm6]	C	T	4.387e^-4	0.91	UTR_5_PRIME CG11638 INTRON su_w[a]_
3L	16065308	3L_16065308_SNP [dm3] 3L_16072208_SNP [dm6]	T	C	4.400e^-4	0.91	INTRON Mbs
2R	18815010	2R_18815010_SNP [dm3] 2R_22927487_SNP [dm6]	A	G	4.401e^-4	0.91	INTRON CG42678	TF binding site mE1_TFBS_cad
3R	19867357	3R_19867357_SNP [dm3] 3R_24041635_SNP [dm6]	C	A	4.410e^-4	0.91	UTR_3_PRIME spas	TF binding site mE1_TFBS_cad
3L	13744039	3L_13744039_SNP [dm3] 3L_13750939_SNP [dm6]	C	T	4.414e^-4	0.91	INTRON bru-3	TF binding site BDTNP1_TFBS_hb
X	6157525	X_6157525_DEL [dm3] X_6263492_DEL [dm6]	TGTAT	T	4.419e^-4	0.91	INTRON schlank
3R	22148135	3R_22148135_INS [dm3] 3R_26322413_INS [dm6]	G	GCTGGCCCG	4.421e^-4	0.91	INTRON CG33970	TF binding site mE1_TFBS_inv
3L	12101676	3L_12101676_SNP [dm3] 3L_12108576_SNP [dm6]	A	C	4.424e^-4	0.91	INTERGENIC
3L	12101809	3L_12101809_SNP [dm3] 3L_12108709_SNP [dm6]	A	G	4.424e^-4	0.91	INTERGENIC
2R	4165727	2R_4165727_SNP [dm3] 2R_8278222_SNP [dm6]	C	G	4.427e^-4	0.91	DOWNSTREAM CR44280 INTERGENIC
2R	16192005	2R_16192005_SNP [dm3] 2R_20304500_SNP [dm6]	A	G	4.432e^-4	0.91	DOWNSTREAM CG11200 & 1 other INTERGENIC
2R	9368096	2R_9368096_SNP [dm3] 2R_13480591_SNP [dm6]	C	T	4.457e^-4	0.91	INTRON arr
3L	16034550	3L_16034550_DEL [dm3] 3L_16041450_DEL [dm6]	CC	C	4.465e^-4	0.91	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16667155	3R_16667155_SNP [dm3] 3R_20841433_SNP [dm6]	T	C	4.482e^-4	0.91	UPSTREAM CG15695 INTERGENIC
3R	19905596	3R_19905596_SNP [dm3] 3R_24079874_SNP [dm6]	T	A	4.494e^-4	0.91	INTRON 4EHP
2R	17435911	2R_17435911_SNP [dm3] 2R_21548406_SNP [dm6]	A	T	4.497e^-4	0.91	INTRON Egfr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6399040	2R_6399040_SNP [dm3] 2R_10511535_SNP [dm6]	G	T	4.511e^-4	0.91	INTRON lola
3L	18714031	3L_18714031_SNP [dm3] 3L_18720931_SNP [dm6]	C	T	4.513e^-4	0.91	DOWNSTREAM CG12477 INTERGENIC
2L	20246910	2L_20246910_SNP [dm3] 2L_20246910_SNP [dm6]	C	T	4.515e^-4	0.91	INTERGENIC
3L	4034146	3L_4034146_DEL [dm3] 3L_4034146_DEL [dm6]	TA	T	4.518e^-4	0.91	DOWNSTREAM Gr64d INTRON Gr64d & 1 other EXON CR45042
2R	16863903	2R_16863903_SNP [dm3] 2R_20976398_SNP [dm6]	C	A	4.524e^-4	0.91	UPSTREAM CG9344 INTRON CG34115	TF binding site mE1_TFBS_HSA
2R	16864913	2R_16864913_SNP [dm3] 2R_20977408_SNP [dm6]	C	T	4.524e^-4	0.91	SYNONYMOUS_CODING CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2R	16865073	2R_16865073_SNP [dm3] 2R_20977568_SNP [dm6]	C	A	4.524e^-4	0.91	UTR_3_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9879090	3R_9879090_SNP [dm3] 3R_14053368_SNP [dm6]	C	T	4.531e^-4	0.91	INTERGENIC
3R	15774978	3R_15774978_SNP [dm3] 3R_19949256_SNP [dm6]	G	C	4.554e^-4	0.91	DOWNSTREAM CG4783 INTRON Hs6st
3R	19715920	3R_19715920_SNP [dm3] 3R_23890198_SNP [dm6]	A	G	4.556e^-4	0.91	UPSTREAM Pli DOWNSTREAM TfIIA-S INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	19715996	3R_19715996_SNP [dm3] 3R_23890274_SNP [dm6]	T	C	4.556e^-4	0.91	UPSTREAM Pli DOWNSTREAM TfIIA-S INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	19716016	3R_19716016_SNP [dm3] 3R_23890294_SNP [dm6]	T	C	4.556e^-4	0.91	UPSTREAM Pli DOWNSTREAM TfIIA-S INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	8115125	X_8115125_DEL [dm3] X_8221092_DEL [dm6]	TT	T	4.563e^-4	0.91	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8115152	X_8115152_SNP [dm3] X_8221119_SNP [dm6]	G	T	4.563e^-4	0.91	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5548514	2R_5548514_SNP [dm3] 2R_9661009_SNP [dm6]	C	T	4.615e^-4	0.91	UPSTREAM tRNA:M3:46A INTRON Mmp2	TF binding site BDTNP1_TFBS_dl
3L	17201735	3L_17201735_SNP [dm3] 3L_17208635_SNP [dm6]	A	C	4.628e^-4	0.91	INTRON Rbp6
3L	18818987	3L_18818987_SNP [dm3] 3L_18825887_SNP [dm6]	T	A	4.632e^-4	0.91	INTRON Cat
3R	22444311	3R_22444311_SNP [dm3] 3R_26618589_SNP [dm6]	T	C	4.632e^-4	0.91	UPSTREAM TwdlM INTERGENIC
2L	3870568	2L_3870568_DEL [dm3] 2L_3870568_DEL [dm6]	TTTT	T	4.633e^-4	0.91	DOWNSTREAM CG31957 INTRON Cep97	TF binding site mE1_TFBS_sens
X	910517	X_910517_SNP [dm3] X_1016484_SNP [dm6]	T	C	4.635e^-4	0.91	INTRON su_w[a]_ & 1 other
X	912471	X_912471_SNP [dm3] X_1018438_SNP [dm6]	C	T	4.635e^-4	0.91	INTRON su_w[a]_ & 1 other
X	916417	X_916417_SNP [dm3] X_1022384_SNP [dm6]	G	T	4.635e^-4	0.91	INTRON su_w[a]_ & 2 others	transposable element FlyBase
X	926276	X_926276_SNP [dm3] X_1032243_SNP [dm6]	C	T	4.635e^-4	0.91	DOWNSTREAM CG33082 INTRON su_w[a]_ & 1 other	TF binding site mE1_TFBS_sens
X	943204	X_943204_SNP [dm3] X_1049171_SNP [dm6]	G	A	4.635e^-4	0.91	INTRON CR44779	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26111913	3R_26111913_SNP [dm3] 3R_30286191_SNP [dm6]	T	A	4.639e^-4	0.91	INTRON hdc
3R	9884251	3R_9884251_SNP [dm3] 3R_14058529_SNP [dm6]	A	C	4.640e^-4	0.91	INTRON foxo
3R	9884266	3R_9884266_SNP [dm3] 3R_14058544_SNP [dm6]	A	G	4.640e^-4	0.91	INTRON foxo
2L	13679242	2L_13679242_SNP [dm3] 2L_13679242_SNP [dm6]	T	C	4.655e^-4	0.91	INTRON CG31814
3L	12852720	3L_12852720_SNP [dm3] 3L_12859620_SNP [dm6]	C	G	4.663e^-4	0.91	NON_SYNONYMOUS_CODING CG32107
X	14996980	X_14996980_SNP [dm3] X_15102947_SNP [dm6]	T	C	4.680e^-4	0.91	INTRON Rab3-GEF
X	14996999	X_14996999_SNP [dm3] X_15102966_SNP [dm6]	T	A	4.680e^-4	0.91	INTRON Rab3-GEF
2R	20285072	2R_20285072_SNP [dm3] 2R_24397549_SNP [dm6]	C	G	4.690e^-4	0.91	NON_SYNONYMOUS_CODING slik	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20290278	2R_20290278_SNP [dm3] 2R_24402755_SNP [dm6]	G	T	4.690e^-4	0.91	UPSTREAM Rpn8 & 1 other INTRON Rpn8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	3513822	3R_3513822_SNP [dm3] 3R_7688100_SNP [dm6]	A	T	4.692e^-4	0.91	INTRON Nlg1
3R	3509328	3R_3509328_SNP [dm3] 3R_7683606_SNP [dm6]	T	A	4.692e^-4	0.91	INTRON Nlg1
3L	12160016	3L_12160016_INS [dm3] 3L_12166916_INS [dm6]	G	GG	4.695e^-4	0.91	INTRON Rh7	TF binding site mE1_TFBS_cad
3R	9369260	3R_9369260_SNP [dm3] 3R_13543538_SNP [dm6]	T	C	4.705e^-4	0.91	DOWNSTREAM CG31337 INTERGENIC
2L	8311796	2L_8311796_SNP [dm3] 2L_8311796_SNP [dm6]	T	C	4.725e^-4	0.91	SYNONYMOUS_CODING CG7806 UPSTREAM CG7810	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	3773471	X_3773471_SNP [dm3] X_3879438_SNP [dm6]	T	A	4.730e^-4	0.91	DOWNSTREAM CG2930 INTRON CG2930	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	10943747	X_10943747_SNP [dm3] X_11049714_SNP [dm6]	G	A	4.731e^-4	0.91	DOWNSTREAM CG11160 INTERGENIC
3R	13037387	3R_13037387_SNP [dm3] 3R_17211665_SNP [dm6]	A	T	4.734e^-4	0.91	INTERGENIC
2L	3583358	2L_3583358_SNP [dm3] 2L_3583358_SNP [dm6]	A	G	4.737e^-4	0.91	INTERGENIC
2R	10019708	2R_10019708_SNP [dm3] 2R_14132203_SNP [dm6]	G	A	4.742e^-4	0.91	INTRON Prosap	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6544034	2R_6544034_SNP [dm3] 2R_10656529_SNP [dm6]	G	A	4.752e^-4	0.91	DOWNSTREAM CR44452 INTERGENIC
3R	21538608	3R_21538608_SNP [dm3] 3R_25712886_SNP [dm6]	G	A	4.753e^-4	0.91	INTRON LpR2
3R	12047649	3R_12047649_SNP [dm3] 3R_16221927_SNP [dm6]	G	T	4.794e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7815898	X_7815898_SNP [dm3] X_7921865_SNP [dm6]	A	G	4.796e^-4	0.91	UTR_3_PRIME Ykt6 DOWNSTREAM CG10777
3L	14242906	3L_14242906_SNP [dm3] 3L_14249806_SNP [dm6]	C	T	4.798e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16197537	2L_16197537_SNP [dm3] 2L_16197537_SNP [dm6]	G	C	4.801e^-4	0.91	INTERGENIC
X	7607468	X_7607468_SNP [dm3] X_7713435_SNP [dm6]	G	C	4.803e^-4	0.91	NON_SYNONYMOUS_CODING CG15478	TF binding site mE1_TFBS_chinmo
3R	17477923	3R_17477923_SNP [dm3] 3R_21652201_SNP [dm6]	C	T	4.804e^-4	0.91	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	19699852	2L_19699852_SNP [dm3] 2L_19699852_SNP [dm6]	C	T	4.806e^-4	0.91	SYNONYMOUS_CODING scw INTRON Lar	TF binding site BDTNP1_TFBS_da
2R	15920745	2R_15920745_SNP [dm3] 2R_20033240_SNP [dm6]	C	G	4.807e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	15920753	2R_15920753_SNP [dm3] 2R_20033248_SNP [dm6]	T	C	4.807e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	13626355	3R_13626355_SNP [dm3] 3R_17800633_SNP [dm6]	T	C	4.820e^-4	0.91	DOWNSTREAM CG17806 INTRON CG17803
X	9631082	X_9631082_SNP [dm3] X_9737049_SNP [dm6]	C	T	4.821e^-4	0.91	INTRON Sp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4980752	3L_4980752_SNP [dm3] 3L_4980752_SNP [dm6]	G	A	4.822e^-4	0.91	UTR_5_PRIME CG17030 UPSTREAM CR45685 INTRON Con	TF binding site mE1_TFBS_HSA
2R	8448383	2R_8448383_SNP [dm3] 2R_12560878_SNP [dm6]	T	C	4.825e^-4	0.91	SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16964101	3R_16964101_SNP [dm3] 3R_21138379_SNP [dm6]	A	C	4.831e^-4	0.91	UTR_5_PRIME meigo UPSTREAM meigo DOWNSTREAM Ubpy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3R	12047636	3R_12047636_SNP [dm3] 3R_16221914_SNP [dm6]	T	A	4.834e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6266423	X_6266423_SNP [dm3] X_6372390_SNP [dm6]	T	C	4.849e^-4	0.91	SYNONYMOUS_CODING PpV	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	10249137	3R_10249137_SNP [dm3] 3R_14423415_SNP [dm6]	A	C	4.859e^-4	0.91	UPSTREAM CR44176 INTRON cv-c
3L	5734386	3L_5734386_SNP [dm3] 3L_5741286_SNP [dm6]	A	G	4.864e^-4	0.91	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21486294	3R_21486294_SNP [dm3] 3R_25660572_SNP [dm6]	C	A	4.868e^-4	0.91	INTRON Tnks	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3534889	3L_3534889_SNP [dm3] 3L_3534889_SNP [dm6]	A	G	4.879e^-4	0.91	INTRON Eip63E
3L	11442339	3L_11442339_SNP [dm3] 3L_11449239_SNP [dm6]	C	A	4.883e^-4	0.91	INTERGENIC
3L	8919729	3L_8919729_DEL [dm3] 3L_8926629_DEL [dm6]	TACCACT	T	4.887e^-4	0.91	INTRON Tsp66E
3R	3709711	3R_3709711_SNP [dm3] 3R_7883989_SNP [dm6]	T	C	4.892e^-4	0.91	INTRON CG17816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16786532	3L_16786532_SNP [dm3] 3L_16793432_SNP [dm6]	T	C	4.900e^-4	0.91	SYNONYMOUS_CODING CG9674	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	945345	X_945345_INS [dm3] X_1051312_INS [dm6]	C	CC	4.912e^-4	0.91	UPSTREAM CG14629 INTRON CR44779	TF binding site BDTNP1_TFBS_z
2R	19206608	2R_19206608_SNP [dm3] 2R_23319085_SNP [dm6]	A	G	4.921e^-4	0.91	SYNONYMOUS_CODING CG30412 INTRON CG30412	TF binding site mE1_TFBS_chinmo
3L	6976870	3L_6976870_SNP [dm3] 3L_6983770_SNP [dm6]	A	G	4.943e^-4	0.91	UTR_3_PRIME CG32388 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8560789	3R_8560789_SNP [dm3] 3R_12735067_SNP [dm6]	C	T	4.947e^-4	0.91	INTERGENIC
2R	11045356	2R_11045356_SNP [dm3] 2R_15157851_SNP [dm6]	G	T	4.947e^-4	0.91	INTRON igl
3R	16309500	3R_16309500_SNP [dm3] 3R_20483778_SNP [dm6]	G	A	4.953e^-4	0.91	INTRON Gfrl
2L	2561300	2L_2561300_SNP [dm3] 2L_2561300_SNP [dm6]	A	G	4.954e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10980455	2R_10980455_SNP [dm3] 2R_15092950_SNP [dm6]	T	G	4.962e^-4	0.91	DOWNSTREAM CR44457 INTERGENIC
3R	14049989	3R_14049989_SNP [dm3] 3R_18224267_SNP [dm6]	C	T	4.970e^-4	0.91	SYNONYMOUS_CODING CG7993 UPSTREAM mTerf5 DOWNSTREAM CG7168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	15962935	2R_15962935_SNP [dm3] 2R_20075430_SNP [dm6]	C	T	4.976e^-4	0.91	INTERGENIC
2L	13580204	2L_13580204_SNP [dm3] 2L_13580204_SNP [dm6]	C	T	4.979e^-4	0.91	INTRON kuz
3R	7901112	3R_7901112_SNP [dm3] 3R_12075390_SNP [dm6]	G	A	4.987e^-4	0.91	SYNONYMOUS_CODING CG14741	TF binding site mE1_TFBS_cad
2L	4006679	2L_4006679_SNP [dm3] 2L_4006679_SNP [dm6]	A	G	4.988e^-4	0.91	DOWNSTREAM CG15423 INTERGENIC
3L	12796991	3L_12796991_SNP [dm3] 3L_12803891_SNP [dm6]	T	A	4.994e^-4	0.91	INTRON Atg1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	24907018	3R_24907018_SNP [dm3] 3R_29081296_SNP [dm6]	T	C	5.004e^-4	0.91	INTRON CG11873
3R	23924131	3R_23924131_SNP [dm3] 3R_28098409_SNP [dm6]	A	G	5.005e^-4	0.91	INTERGENIC
X	5323117	X_5323117_DEL [dm3] X_5429084_DEL [dm6]	GG	G	5.023e^-4	0.91	UPSTREAM CG15784 DOWNSTREAM CG16756 EXON CR45517
3L	17330391	3L_17330391_SNP [dm3] 3L_17337291_SNP [dm6]	A	G	5.027e^-4	0.91	UTR_3_PRIME CG6479 UPSTREAM CR44564
2R	14601377	2R_14601377_SNP [dm3] 2R_18713872_SNP [dm6]	C	T	5.032e^-4	0.91	INTERGENIC
3L	17330373	3L_17330373_SNP [dm3] 3L_17337273_SNP [dm6]	G	C	5.051e^-4	0.91	UTR_3_PRIME CG6479 UPSTREAM CR44564
3L	17330388	3L_17330388_SNP [dm3] 3L_17337288_SNP [dm6]	G	C	5.051e^-4	0.91	UTR_3_PRIME CG6479 UPSTREAM CR44564
3L	17330457	3L_17330457_SNP [dm3] 3L_17337357_SNP [dm6]	T	C	5.051e^-4	0.91	SYNONYMOUS_CODING CG6479 UPSTREAM CR44564
2R	11722955	2R_11722955_SNP [dm3] 2R_15835450_SNP [dm6]	G	A	5.054e^-4	0.91	UPSTREAM Poxn INTRON tun	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	21328767	3R_21328767_SNP [dm3] 3R_25503045_SNP [dm6]	G	A	5.056e^-4	0.91	UPSTREAM CR45651 & 1 other EXON CR43457	TF binding site mE1_TFBS_HSA
2L	16323288	2L_16323288_SNP [dm3] 2L_16323288_SNP [dm6]	T	G	5.056e^-4	0.91	INTRON cact	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24085612	3R_24085612_SNP [dm3] 3R_28259890_SNP [dm6]	C	T	5.063e^-4	0.91	INTERGENIC
2L	4468654	2L_4468654_SNP [dm3] 2L_4468654_SNP [dm6]	T	C	5.069e^-4	0.91	DOWNSTREAM CG17840 INTRON ine	TF binding site mE1_TFBS_cad
3R	3509347	3R_3509347_SNP [dm3] 3R_7683625_SNP [dm6]	G	A	5.075e^-4	0.91	INTRON Nlg1
X	19383475	X_19383475_SNP [dm3] X_19489442_SNP [dm6]	G	T	5.100e^-4	0.91	INTRON pcm	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16121036	2R_16121036_SNP [dm3] 2R_20233531_SNP [dm6]	C	T	5.104e^-4	0.91	SPLICE_SITE_REGION CG11044 DOWNSTREAM tRNA:G3:56EFb INTRON CG11044
2L	12532904	2L_12532904_SNP [dm3] 2L_12532904_SNP [dm6]	T	G	5.113e^-4	0.91	INTRON bun
3L	12807157	3L_12807157_SNP [dm3] 3L_12814057_SNP [dm6]	G	A	5.114e^-4	0.91	UPSTREAM CG42588 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13595388	3R_13595388_SNP [dm3] 3R_17769666_SNP [dm6]	G	A	5.115e^-4	0.91	UTR_3_PRIME CG43102
3R	16401373	3R_16401373_SNP [dm3] 3R_20575651_SNP [dm6]	T	A	5.117e^-4	0.91	DOWNSTREAM snoRNA:Psi18S-301 INTRON TFAM	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7987284	2R_7987284_SNP [dm3] 2R_12099779_SNP [dm6]	A	G	5.127e^-4	0.91	INTRON jeb	TF binding site mE1_TFBS_Trl
3L	16781387	3L_16781387_SNP [dm3] 3L_16788287_SNP [dm6]	A	T	5.128e^-4	0.91	UTR_3_PRIME CG9674
2L	2119889	2L_2119889_SNP [dm3] 2L_2119889_SNP [dm6]	A	G	5.134e^-4	0.91	INTERGENIC
3R	10411897	3R_10411897_SNP [dm3] 3R_14586175_SNP [dm6]	A	T	5.135e^-4	0.91	INTRON stumps	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
X	7875448	X_7875448_SNP [dm3] X_7981415_SNP [dm6]	A	T	5.148e^-4	0.91	INTRON sn
X	13575910	X_13575910_SNP [dm3] X_13681877_SNP [dm6]	C	G	5.151e^-4	0.91	INTERGENIC
3L	16449620	3L_16449620_SNP [dm3] 3L_16456520_SNP [dm6]	T	G	5.161e^-4	0.91	INTRON CG33158
3R	17477947	3R_17477947_SNP [dm3] 3R_21652225_SNP [dm6]	T	A	5.174e^-4	0.91	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9100775	2R_9100775_SNP [dm3] 2R_13213270_SNP [dm6]	C	T	5.185e^-4	0.91	SYNONYMOUS_CODING AQP
2R	10312468	2R_10312468_SNP [dm3] 2R_14424963_SNP [dm6]	C	A	5.186e^-4	0.91	DOWNSTREAM CG17386 INTERGENIC
2L	6116365	2L_6116365_SNP [dm3] 2L_6116365_SNP [dm6]	A	C	5.201e^-4	0.91	INTRON stai
3L	13744010	3L_13744010_SNP [dm3] 3L_13750910_SNP [dm6]	A	T	5.205e^-4	0.91	INTRON bru-3	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	5639872	X_5639872_SNP [dm3] X_5745839_SNP [dm6]	A	G	5.208e^-4	0.91	INTRON IntS6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2R	17319738	2R_17319738_SNP [dm3] 2R_21432233_SNP [dm6]	C	A	5.216e^-4	0.91	INTRON Sdc
X	989110	X_989110_SNP [dm3] X_1095077_SNP [dm6]	A	C	5.221e^-4	0.91	INTRON CG3655
X	989144	X_989144_SNP [dm3] X_1095111_SNP [dm6]	A	C	5.221e^-4	0.91	INTRON CG3655
2L	3620537	2L_3620537_SNP [dm3] 2L_3620537_SNP [dm6]	C	A	5.233e^-4	0.91	SYNONYMOUS_CODING Dot DOWNSTREAM CG15418
3R	11340965	3R_11340965_SNP [dm3] 3R_15515243_SNP [dm6]	G	A	5.249e^-4	0.91	INTERGENIC
2R	11772048	2R_11772048_SNP [dm3] 2R_15884543_SNP [dm6]	G	A	5.256e^-4	0.91	SYNONYMOUS_CODING sli
X	12883463	X_12883463_SNP [dm3] X_12989430_SNP [dm6]	C	T	5.260e^-4	0.91	INTRON rad
2R	12066898	2R_12066898_SNP [dm3] 2R_16179393_SNP [dm6]	A	G	5.267e^-4	0.91	INTRON Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12052465	3L_12052465_SNP [dm3] 3L_12059365_SNP [dm6]	A	G	5.272e^-4	0.91	INTRON rols
2L	19985665	2L_19985665_SNP [dm3] 2L_19985665_SNP [dm6]	T	A	5.281e^-4	0.91	INTRON CG43861	TF binding site mE1_TFBS_inv
3L	1584929	3L_1584929_SNP [dm3] 3L_1584929_SNP [dm6]	C	G	5.291e^-4	0.91	INTRON CG13917
3L	1584932	3L_1584932_SNP [dm3] 3L_1584932_SNP [dm6]	T	G	5.291e^-4	0.91	INTRON CG13917
3L	1584937	3L_1584937_SNP [dm3] 3L_1584937_SNP [dm6]	A	C	5.291e^-4	0.91	INTRON CG13917
3L	1584939	3L_1584939_SNP [dm3] 3L_1584939_SNP [dm6]	A	T	5.291e^-4	0.91	INTRON CG13917
3L	1584941	3L_1584941_INS [dm3] 3L_1584941_INS [dm6]	T	TT	5.291e^-4	0.91	INTRON CG13917
3L	1584943	3L_1584943_SNP [dm3] 3L_1584943_SNP [dm6]	A	T	5.291e^-4	0.91	INTRON CG13917
3R	18984488	3R_18984488_SNP [dm3] 3R_23158766_SNP [dm6]	C	T	5.303e^-4	0.91	SYNONYMOUS_CODING VhaAC39-2 UPSTREAM unk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	17650107	2R_17650107_DEL [dm3] 2R_21762602_DEL [dm6]	GG	G	5.306e^-4	0.91	DOWNSTREAM CR43983 INTERGENIC
3L	2375776	3L_2375776_SNP [dm3] 3L_2375776_SNP [dm6]	G	A	5.308e^-4	0.91	NON_SYNONYMOUS_CODING CG9004 DOWNSTREAM CG15877	TF binding site mE1_TFBS_sens
3L	17309896	3L_17309896_SNP [dm3] 3L_17316796_SNP [dm6]	T	C	5.309e^-4	0.91	INTERGENIC
3R	11468396	3R_11468396_SNP [dm3] 3R_15642674_SNP [dm6]	A	C	5.313e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	11205613	3R_11205613_SNP [dm3] 3R_15379891_SNP [dm6]	A	T	5.325e^-4	0.91	INTRON Rbp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	7794834	3R_7794834_SNP [dm3] 3R_11969112_SNP [dm6]	A	G	5.337e^-4	0.91	INTRON GC1
3L	14215326	3L_14215326_DEL [dm3] 3L_14222226_DEL [dm6]	TT	T	5.345e^-4	0.91	INTRON nuf
3L	14215343	3L_14215343_SNP [dm3] 3L_14222243_SNP [dm6]	T	A	5.345e^-4	0.91	INTRON nuf
3L	14215347	3L_14215347_DEL [dm3] 3L_14222247_DEL [dm6]	TTGATAA	T	5.345e^-4	0.91	INTRON nuf
3L	14215360	3L_14215360_SNP [dm3] 3L_14222260_SNP [dm6]	C	T	5.345e^-4	0.91	INTRON nuf
3R	26493712	3R_26493712_SNP [dm3] 3R_30667990_SNP [dm6]	A	G	5.346e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	19615253	X_19615253_SNP [dm3] X_19721220_SNP [dm6]	T	A	5.358e^-4	0.91	INTRON CG12531
X	19383477	X_19383477_DEL [dm3] X_19489444_DEL [dm6]	GGACATGGCG	G	5.371e^-4	0.91	INTRON pcm	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16022569	3R_16022569_SNP [dm3] 3R_20196847_SNP [dm6]	G	A	5.373e^-4	0.91	INTERGENIC
3L	6247908	3L_6247908_SNP [dm3] 3L_6254808_SNP [dm6]	T	G	5.379e^-4	0.91	INTRON Best2
2R	11751578	2R_11751578_SNP [dm3] 2R_15864073_SNP [dm6]	A	T	5.395e^-4	0.91	DOWNSTREAM Rif1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25448969	3R_25448969_SNP [dm3] 3R_29623247_SNP [dm6]	A	G	5.398e^-4	0.91	INTERGENIC
X	989232	X_989232_SNP [dm3] X_1095199_SNP [dm6]	A	C	5.398e^-4	0.91	INTRON CG3655
2L	20905986	2L_20905986_SNP [dm3] 2L_20905986_SNP [dm6]	T	G	5.418e^-4	0.91	INTRON sky & 1 other
2R	15931170	2R_15931170_SNP [dm3] 2R_20043665_SNP [dm6]	A	G	5.424e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_cad
3R	8555227	3R_8555227_DEL [dm3] 3R_12729505_DEL [dm6]	TT	T	5.435e^-4	0.91	INTERGENIC
2L	5973727	2L_5973727_SNP [dm3] 2L_5973727_SNP [dm6]	G	C	5.436e^-4	0.91	INTRON chic
2L	5837172	2L_5837172_SNP [dm3] 2L_5837172_SNP [dm6]	A	T	5.437e^-4	0.91	INTRON TrissinR
X	15167027	X_15167027_SNP [dm3] X_15272994_SNP [dm6]	A	G	5.439e^-4	0.91	UPSTREAM CG9106 INTERGENIC
2R	11317613	2R_11317613_SNP [dm3] 2R_15430108_SNP [dm6]	C	T	5.443e^-4	0.91	INTRON CG43729
3R	8636162	3R_8636162_SNP [dm3] 3R_12810440_SNP [dm6]	C	A	5.447e^-4	0.91	DOWNSTREAM CG31345 INTERGENIC
X	10082997	X_10082997_INS [dm3] X_10188964_INS [dm6]	A	AGCAGCA	5.466e^-4	0.91	INTRON CR44894
X	10083006	X_10083006_INS [dm3] X_10188973_INS [dm6]	A	AGCACTA	5.466e^-4	0.91	INTRON CR44894
3L	13984306	3L_13984306_SNP [dm3] 3L_13991206_SNP [dm6]	A	T	5.468e^-4	0.91	INTRON CG17364	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	14761495	3R_14761495_SNP [dm3] 3R_18935773_SNP [dm6]	T	A	5.474e^-4	0.91	INTRON CG42613
3R	20993301	3R_20993301_SNP [dm3] 3R_25167579_SNP [dm6]	A	C	5.475e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20993379	3R_20993379_SNP [dm3] 3R_25167657_SNP [dm6]	T	A	5.475e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12240317	X_12240317_SNP [dm3] X_12346284_SNP [dm6]	T	G	5.489e^-4	0.91	INTERGENIC
3R	9682894	3R_9682894_SNP [dm3] 3R_13857172_SNP [dm6]	A	G	5.500e^-4	0.91	INTERGENIC
X	5382272	X_5382272_SNP [dm3] X_5488239_SNP [dm6]	G	A	5.501e^-4	0.91	INTRON SPR
3R	26659002	3R_26659002_SNP [dm3] 3R_30833280_SNP [dm6]	A	T	5.516e^-4	0.91	INTRON CG15544
X	7188360	X_7188360_SNP [dm3] X_7294327_SNP [dm6]	G	A	5.516e^-4	0.91	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E
3L	3262077	3L_3262077_SNP [dm3] 3L_3262077_SNP [dm6]	C	G	5.532e^-4	0.91	INTRON ckd
X	16079218	X_16079218_SNP [dm3] X_16185185_SNP [dm6]	C	T	5.532e^-4	0.91	INTERGENIC
X	16286848	X_16286848_SNP [dm3] X_16392815_SNP [dm6]	G	T	5.532e^-4	0.91	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3802929	3L_3802929_SNP [dm3] 3L_3802929_SNP [dm6]	G	A	5.539e^-4	0.91	DOWNSTREAM ntc INTRON CG32264
3L	3802938	3L_3802938_SNP [dm3] 3L_3802938_SNP [dm6]	T	C	5.539e^-4	0.91	DOWNSTREAM ntc INTRON CG32264
X	13060240	X_13060240_SNP [dm3] X_13166207_SNP [dm6]	G	T	5.557e^-4	0.91	INTRON CG34411
2R	19399679	2R_19399679_SNP [dm3] 2R_23512156_SNP [dm6]	T	A	5.562e^-4	0.91	SYNONYMOUS_CODING CG3906	TF binding site mE1_TFBS_cad
3R	24308824	3R_24308824_SNP [dm3] 3R_28483102_SNP [dm6]	A	C	5.571e^-4	0.91	INTERGENIC
2R	5318847	2R_5318847_SNP [dm3] 2R_9431342_SNP [dm6]	A	G	5.576e^-4	0.91	INTRON Pdk
2L	581955	2L_581955_SNP [dm3] 2L_581955_SNP [dm6]	G	A	5.578e^-4	0.91	INTERGENIC
2L	16575750	2L_16575750_SNP [dm3] 2L_16575750_SNP [dm6]	G	A	5.579e^-4	0.91	INTRON CG42389
2L	16575759	2L_16575759_SNP [dm3] 2L_16575759_SNP [dm6]	T	G	5.579e^-4	0.91	INTRON CG42389
3R	20118368	3R_20118368_SNP [dm3] 3R_24292646_SNP [dm6]	A	T	5.607e^-4	0.91	UTR_3_PRIME CG6364 DOWNSTREAM CG6364 & 1 other INTRON CG6364
3L	10094296	3L_10094296_SNP [dm3] 3L_10101196_SNP [dm6]	T	G	5.623e^-4	0.91	UPSTREAM CG42826 INTRON dpr6
3L	4052080	3L_4052080_SNP [dm3] 3L_4052080_SNP [dm6]	A	G	5.636e^-4	0.91	INTRON CG1136	TF binding site BDTNP1_TFBS_twi
2R	15926141	2R_15926141_SNP [dm3] 2R_20038636_SNP [dm6]	A	G	5.639e^-4	0.91	INTERGENIC
2R	15926153	2R_15926153_SNP [dm3] 2R_20038648_SNP [dm6]	G	A	5.639e^-4	0.91	INTERGENIC
3R	16063629	3R_16063629_SNP [dm3] 3R_20237907_SNP [dm6]	G	A	5.642e^-4	0.91	SYNONYMOUS_CODING Nlg4
X	13165031	X_13165031_SNP [dm3] X_13270998_SNP [dm6]	T	A	5.661e^-4	0.91	INTRON HDAC4
2R	13807238	2R_13807238_SNP [dm3] 2R_17919733_SNP [dm6]	C	T	5.683e^-4	0.91	INTRON Elk
3R	14256083	3R_14256083_SNP [dm3] 3R_18430361_SNP [dm6]	T	C	5.686e^-4	0.91	UTR_3_PRIME fru DOWNSTREAM fru INTRON fru
3R	14256084	3R_14256084_SNP [dm3] 3R_18430362_SNP [dm6]	G	A	5.686e^-4	0.91	UTR_3_PRIME fru DOWNSTREAM fru INTRON fru
3L	3078823	3L_3078823_SNP [dm3] 3L_3078823_SNP [dm6]	T	C	5.690e^-4	0.91	INTRON CG11486
X	989220	X_989220_SNP [dm3] X_1095187_SNP [dm6]	A	C	5.696e^-4	0.91	INTRON CG3655
3L	14208067	3L_14208067_SNP [dm3] 3L_14214967_SNP [dm6]	T	C	5.698e^-4	0.91	INTRON nuf	TF binding site mE1_TFBS_inv
X	910649	X_910649_SNP [dm3] X_1016616_SNP [dm6]	T	C	5.710e^-4	0.91	UTR_5_PRIME CG11638 INTRON su_w[a]_
3R	13625919	3R_13625919_SNP [dm3] 3R_17800197_SNP [dm6]	A	C	5.720e^-4	0.91	NON_SYNONYMOUS_CODING CG17803
3L	19208037	3L_19208037_SNP [dm3] 3L_19214937_SNP [dm6]	C	G	5.722e^-4	0.91	INTRON fz2
2R	19592952	2R_19592952_SNP [dm3] 2R_23705429_SNP [dm6]	A	C	5.751e^-4	0.91	DOWNSTREAM l_2_not & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12710978	3L_12710978_DEL [dm3] 3L_12717878_DEL [dm6]	TTACT	T	5.754e^-4	0.91	INTERGENIC
3L	12710988	3L_12710988_DEL [dm3] 3L_12717888_DEL [dm6]	AAA	G	5.754e^-4	0.91	INTERGENIC
3L	14274415	3L_14274415_DEL [dm3] 3L_14281315_DEL [dm6]	ATGTA	A	5.764e^-4	0.91	INTRON fz
X	10342486	X_10342486_SNP [dm3] X_10448453_SNP [dm6]	G	A	5.795e^-4	0.91	INTRON CG32683
2R	17813949	2R_17813949_SNP [dm3] 2R_21926444_SNP [dm6]	A	G	5.796e^-4	0.91	INTRON Fili
2R	6047882	2R_6047882_SNP [dm3] 2R_10160377_SNP [dm6]	A	G	5.798e^-4	0.91	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8511394	2R_8511394_SNP [dm3] 2R_12623889_SNP [dm6]	C	T	5.802e^-4	0.91	NON_SYNONYMOUS_CODING CG30054 DOWNSTREAM Galphaq INTRON CG30054
3L	8866546	3L_8866546_SNP [dm3] 3L_8873446_SNP [dm6]	C	G	5.806e^-4	0.91	INTRON dally	TF binding site mE1_TFBS_cad
2R	7625369	2R_7625369_SNP [dm3] 2R_11737864_SNP [dm6]	T	G	5.817e^-4	0.91	INTERGENIC
X	993930	X_993930_SNP [dm3] X_1099897_SNP [dm6]	T	C	5.831e^-4	0.91	INTRON CG3655	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15091616	2L_15091616_SNP [dm3] 2L_15091616_SNP [dm6]	G	C	5.838e^-4	0.91	INTRON CG15270
X	6884037	X_6884037_SNP [dm3] X_6990004_SNP [dm6]	C	A	5.847e^-4	0.91	INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	14671977	2L_14671977_SNP [dm3] 2L_14671977_SNP [dm6]	T	C	5.872e^-4	0.91	INTRON osp
3L	13985487	3L_13985487_SNP [dm3] 3L_13992387_SNP [dm6]	A	G	5.874e^-4	0.91	INTRON CG17364	TF binding site BDTNP1_TFBS_dl
3L	2707695	3L_2707695_SNP [dm3] 3L_2707695_SNP [dm6]	C	A	5.881e^-4	0.91	INTRON Fife
2R	11491209	2R_11491209_SNP [dm3] 2R_15603704_SNP [dm6]	T	C	5.882e^-4	0.91	INTERGENIC
2L	13580175	2L_13580175_SNP [dm3] 2L_13580175_SNP [dm6]	A	T	5.883e^-4	0.91	INTRON kuz
3R	14145237	3R_14145237_SNP [dm3] 3R_18319515_SNP [dm6]	T	A	5.883e^-4	0.91	INTRON CG31235
2L	14656433	2L_14656433_SNP [dm3] 2L_14656433_SNP [dm6]	G	A	5.884e^-4	0.91	INTRON osp
3L	11885640	3L_11885640_SNP [dm3] 3L_11892540_SNP [dm6]	C	T	5.888e^-4	0.91	INTRON CG44837
2L	22128351	2L_22128351_DEL [dm3] 2L_22128351_DEL [dm6]	ATAA	A	5.905e^-4	0.91	UTR_3_PRIME CycK
X	3780482	X_3780482_SNP [dm3] X_3886449_SNP [dm6]	T	C	5.923e^-4	0.91	INTRON CG15239
X	989192	X_989192_SNP [dm3] X_1095159_SNP [dm6]	T	A	5.927e^-4	0.91	INTRON CG3655
X	989953	X_989953_SNP [dm3] X_1095920_SNP [dm6]	G	A	5.927e^-4	0.91	INTRON CG3655
X	994042	X_994042_SNP [dm3] X_1100009_SNP [dm6]	G	T	5.927e^-4	0.91	INTRON CG3655	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25465399	3R_25465399_SNP [dm3] 3R_29639677_SNP [dm6]	C	A	5.931e^-4	0.91	INTRON Dop1R2
2R	16987042	2R_16987042_SNP [dm3] 2R_21099537_SNP [dm6]	G	A	5.932e^-4	0.91	NON_SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	25977995	3R_25977995_SNP [dm3] 3R_30152273_SNP [dm6]	C	A	5.944e^-4	0.91	SYNONYMOUS_CODING CG15529 DOWNSTREAM CG11498	TF binding site mE1_TFBS_cad
2R	19491465	2R_19491465_SNP [dm3] 2R_23603942_SNP [dm6]	T	C	5.947e^-4	0.91	NON_SYNONYMOUS_CODING CG17664 DOWNSTREAM CG5398
3R	8636315	3R_8636315_SNP [dm3] 3R_12810593_SNP [dm6]	T	G	5.964e^-4	0.91	DOWNSTREAM CG31345 INTERGENIC
3R	27472952	3R_27472952_INS [dm3] 3R_31647230_INS [dm6]	G	GG	5.965e^-4	0.91	INTRON kek6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8922401	3L_8922401_SNP [dm3] 3L_8929301_SNP [dm6]	G	A	5.972e^-4	0.91	INTRON Tsp66E
2R	16981798	2R_16981798_SNP [dm3] 2R_21094293_SNP [dm6]	A	T	5.975e^-4	0.91	INTRON CG34396
X	988169	X_988169_SNP [dm3] X_1094136_SNP [dm6]	A	G	5.982e^-4	0.91	INTRON CG3655
X	989999	X_989999_SNP [dm3] X_1095966_SNP [dm6]	G	T	5.982e^-4	0.91	INTRON CG3655
3L	6129116	3L_6129116_INS [dm3] 3L_6136016_INS [dm6]	A	AATCCGCGGAAAA...	5.984e^-4	0.91	UPSTREAM Lcp65Ag1 DOWNSTREAM Lcp65Af INTERGENIC	transposable element FlyBase
X	11670067	X_11670067_INS [dm3] X_11776034_INS [dm6]	G	GCGTTCC	5.985e^-4	0.91	INTRON dy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	912965	X_912965_SNP [dm3] X_1018932_SNP [dm6]	A	G	5.987e^-4	0.91	DOWNSTREAM CG32814 INTRON su_w[a]_ & 1 other
3R	9566434	3R_9566434_DEL [dm3] 3R_13740712_DEL [dm6]	TT	T	6.001e^-4	0.91	INTRON CG34383
2R	17649922	2R_17649922_SNP [dm3] 2R_21762417_SNP [dm6]	G	C	6.006e^-4	0.91	DOWNSTREAM CR43983 INTERGENIC
3R	8939526	3R_8939526_SNP [dm3] 3R_13113804_SNP [dm6]	A	G	6.007e^-4	0.91	INTRON timeout
2R	15853305	2R_15853305_DEL [dm3] 2R_19965800_DEL [dm6]	AGGTACATCA	A	6.038e^-4	0.91	INTERGENIC
2R	8931321	2R_8931321_SNP [dm3] 2R_13043816_SNP [dm6]	T	G	6.053e^-4	0.91	DOWNSTREAM CG13323 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	6047984	2R_6047984_SNP [dm3] 2R_10160479_SNP [dm6]	T	A	6.054e^-4	0.91	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6048018	2R_6048018_SNP [dm3] 2R_10160513_SNP [dm6]	T	C	6.054e^-4	0.91	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6048042	2R_6048042_DEL [dm3] 2R_10160537_DEL [dm6]	ACATA	A	6.054e^-4	0.91	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6048056	2R_6048056_SNP [dm3] 2R_10160551_SNP [dm6]	C	A	6.054e^-4	0.91	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6048062	2R_6048062_SNP [dm3] 2R_10160557_SNP [dm6]	A	T	6.054e^-4	0.91	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6048085	2R_6048085_SNP [dm3] 2R_10160580_SNP [dm6]	A	T	6.054e^-4	0.91	INTRON KCNQ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6048154	2R_6048154_SNP [dm3] 2R_10160649_SNP [dm6]	T	G	6.054e^-4	0.91	INTRON KCNQ	TF binding site mE1_TFBS_HSA
2R	6048216	2R_6048216_SNP [dm3] 2R_10160711_SNP [dm6]	T	G	6.054e^-4	0.91	INTRON KCNQ	TF binding site mE1_TFBS_HSA
3R	16069665	3R_16069665_SNP [dm3] 3R_20243943_SNP [dm6]	A	T	6.056e^-4	0.91	INTRON Nlg4	TF binding site BDTNP1_TFBS_sna
2L	6118197	2L_6118197_SNP [dm3] 2L_6118197_SNP [dm6]	A	G	6.081e^-4	0.91	UPSTREAM CG31642 INTRON stai
X	6884158	X_6884158_SNP [dm3] X_6990125_SNP [dm6]	C	T	6.095e^-4	0.91	INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
X	6884163	X_6884163_SNP [dm3] X_6990130_SNP [dm6]	C	T	6.095e^-4	0.91	INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
2R	20255161	2R_20255161_SNP [dm3] 2R_24367638_SNP [dm6]	G	A	6.099e^-4	0.91	INTRON bs & 1 other	TF binding site mE1_TFBS_inv
3R	15796376	3R_15796376_SNP [dm3] 3R_19970654_SNP [dm6]	G	A	6.105e^-4	0.91	INTRON Hs6st
3R	22769648	3R_22769648_SNP [dm3] 3R_26943926_SNP [dm6]	G	C	6.117e^-4	0.91	SYNONYMOUS_CODING sda
3L	1584930	3L_1584930_SNP [dm3] 3L_1584930_SNP [dm6]	A	G	6.130e^-4	0.91	INTRON CG13917
2L	15632177	2L_15632177_SNP [dm3] 2L_15632177_SNP [dm6]	T	A	6.131e^-4	0.91	UTR_3_PRIME CG18480
3R	25538547	3R_25538547_SNP [dm3] 3R_29712825_SNP [dm6]	G	A	6.134e^-4	0.91	DOWNSTREAM CR45569 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	758706	3L_758706_SNP [dm3] 3L_758706_SNP [dm6]	G	A	6.137e^-4	0.91	INTERGENIC
2L	12387891	2L_12387891_SNP [dm3] 2L_12387891_SNP [dm6]	A	T	6.137e^-4	0.91	INTRON bru-2
2L	16966155	2L_16966155_SNP [dm3] 2L_16966155_SNP [dm6]	T	C	6.151e^-4	0.91	DOWNSTREAM CR45285 INTERGENIC
X	15167127	X_15167127_SNP [dm3] X_15273094_SNP [dm6]	T	C	6.162e^-4	0.91	UPSTREAM CG9106 INTERGENIC
3R	12605211	3R_12605211_SNP [dm3] 3R_16779489_SNP [dm6]	A	G	6.177e^-4	0.91	INTERGENIC
3R	3508975	3R_3508975_SNP [dm3] 3R_7683253_SNP [dm6]	T	G	6.178e^-4	0.91	INTRON Nlg1
3R	9369261	3R_9369261_SNP [dm3] 3R_13543539_SNP [dm6]	T	C	6.180e^-4	0.91	DOWNSTREAM CG31337 INTERGENIC
2L	1006745	2L_1006745_SNP [dm3] 2L_1006745_SNP [dm6]	C	G	6.182e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	8446274	3R_8446274_SNP [dm3] 3R_12620552_SNP [dm6]	C	T	6.187e^-4	0.91	INTERGENIC
3R	16401363	3R_16401363_SNP [dm3] 3R_20575641_SNP [dm6]	T	A	6.215e^-4	0.91	DOWNSTREAM snoRNA:Psi18S-301 INTRON TFAM	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16323279	2L_16323279_INS [dm3] 2L_16323279_INS [dm6]	G	CAAAT	6.242e^-4	0.91	INTRON cact	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8679925	3L_8679925_SNP [dm3] 3L_8686825_SNP [dm6]	C	A	6.263e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_bcd
3L	2537737	3L_2537737_SNP [dm3] 3L_2537737_SNP [dm6]	C	T	6.280e^-4	0.91	INTRON Spn
3L	13543406	3L_13543406_INS [dm3] 3L_13550306_INS [dm6]	A	AA	6.283e^-4	0.91	INTRON bru-3
3R	18988219	3R_18988219_SNP [dm3] 3R_23162497_SNP [dm6]	C	A	6.289e^-4	0.91	INTERGENIC
3R	14322565	3R_14322565_SNP [dm3] 3R_18496843_SNP [dm6]	A	G	6.293e^-4	0.91	INTRON fru	TF binding site mE1_TFBS_inv
3L	13041689	3L_13041689_SNP [dm3] 3L_13048589_SNP [dm6]	T	G	6.299e^-4	0.91	UTR_3_PRIME CG11279 DOWNSTREAM CG11279
3R	15012665	3R_15012665_SNP [dm3] 3R_19186943_SNP [dm6]	A	T	6.306e^-4	0.91	INTRON CG31475	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	888190	2L_888190_SNP [dm3] 2L_888190_SNP [dm6]	T	G	6.313e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16069318	3R_16069318_SNP [dm3] 3R_20243596_SNP [dm6]	T	C	6.315e^-4	0.91	INTRON Nlg4
2R	12286796	2R_12286796_SNP [dm3] 2R_16399291_SNP [dm6]	C	T	6.324e^-4	0.91	SYNONYMOUS_CODING Sema-2b	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16551082	2L_16551082_SNP [dm3] 2L_16551082_SNP [dm6]	A	T	6.325e^-4	0.91	INTRON CG42389
2R	15982894	2R_15982894_SNP [dm3] 2R_20095389_SNP [dm6]	A	C	6.336e^-4	0.91	INTERGENIC
3R	23924205	3R_23924205_SNP [dm3] 3R_28098483_SNP [dm6]	A	G	6.338e^-4	0.91	INTERGENIC
3R	11516157	3R_11516157_SNP [dm3] 3R_15690435_SNP [dm6]	C	A	6.348e^-4	0.91	UTR_3_PRIME pxb
2R	5549150	2R_5549150_SNP [dm3] 2R_9661645_SNP [dm6]	C	T	6.363e^-4	0.91	DOWNSTREAM tRNA:M3:46A INTRON Mmp2
3R	15959356	3R_15959356_SNP [dm3] 3R_20133634_SNP [dm6]	G	C	6.363e^-4	0.91	INTERGENIC
3L	1990917	3L_1990917_SNP [dm3] 3L_1990917_SNP [dm6]	C	T	6.381e^-4	0.91	INTERGENIC
2L	14374078	2L_14374078_SNP [dm3] 2L_14374078_SNP [dm6]	G	C	6.394e^-4	0.91	INTERGENIC
3L	10131506	3L_10131506_SNP [dm3] 3L_10138406_SNP [dm6]	G	T	6.404e^-4	0.91	INTRON dpr6
2R	19720041	2R_19720041_SNP [dm3] 2R_23832518_SNP [dm6]	T	C	6.405e^-4	0.91	INTRON CG5549
3R	10137321	3R_10137321_SNP [dm3] 3R_14311599_SNP [dm6]	T	C	6.421e^-4	0.91	INTRON CG31321
3R	24578311	3R_24578311_SNP [dm3] 3R_28752589_SNP [dm6]	C	T	6.426e^-4	0.91	UPSTREAM CG10000 INTERGENIC
3R	13608605	3R_13608605_SNP [dm3] 3R_17782883_SNP [dm6]	A	C	6.431e^-4	0.91	SYNONYMOUS_CODING CG43102 UTR_5_PRIME CG43102	TF binding site mE1_TFBS_cad
3R	13996763	3R_13996763_SNP [dm3] 3R_18171041_SNP [dm6]	G	A	6.442e^-4	0.91	UPSTREAM PP2A-B' INTRON PP2A-B'	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	6476483	3R_6476483_SNP [dm3] 3R_10650761_SNP [dm6]	T	G	6.442e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15927595	2R_15927595_SNP [dm3] 2R_20040090_SNP [dm6]	C	G	6.447e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_sens
2R	15927615	2R_15927615_SNP [dm3] 2R_20040110_SNP [dm6]	G	C	6.447e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_sens
2R	19906498	2R_19906498_SNP [dm3] 2R_24018975_SNP [dm6]	G	A	6.458e^-4	0.91	SYNONYMOUS_CODING CG3121 DOWNSTREAM CG3907	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19906499	2R_19906499_SNP [dm3] 2R_24018976_SNP [dm6]	A	T	6.458e^-4	0.91	NON_SYNONYMOUS_CODING CG3121 DOWNSTREAM CG3907	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19906519	2R_19906519_SNP [dm3] 2R_24018996_SNP [dm6]	A	G	6.458e^-4	0.91	SYNONYMOUS_CODING CG3121 DOWNSTREAM CG3907	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2521632	X_2521632_SNP [dm3] X_2627599_SNP [dm6]	C	T	6.458e^-4	0.91	INTRON PI4KIIIalpha
X	8063828	X_8063828_SNP [dm3] X_8169795_SNP [dm6]	A	G	6.458e^-4	0.91	SYNONYMOUS_CODING CG2278 DOWNSTREAM slpr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14247119	3L_14247119_SNP [dm3] 3L_14254019_SNP [dm6]	T	C	6.459e^-4	0.91	INTERGENIC
3R	3505414	3R_3505414_SNP [dm3] 3R_7679692_SNP [dm6]	T	C	6.461e^-4	0.91	INTRON Nlg1
2L	19702268	2L_19702268_SNP [dm3] 2L_19702268_SNP [dm6]	C	T	6.480e^-4	0.91	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	8005523	X_8005523_SNP [dm3] X_8111490_SNP [dm6]	G	A	6.494e^-4	0.91	INTRON Gclc
2R	11772180	2R_11772180_SNP [dm3] 2R_15884675_SNP [dm6]	G	A	6.509e^-4	0.91	INTRON sli
X	986036	X_986036_SNP [dm3] X_1092003_SNP [dm6]	C	T	6.511e^-4	0.91	INTRON CG3655
2R	18157656	2R_18157656_SNP [dm3] 2R_22270151_SNP [dm6]	A	T	6.532e^-4	0.91	UPSTREAM dve INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	17059645	2R_17059645_SNP [dm3] 2R_21172140_SNP [dm6]	G	A	6.535e^-4	0.91	SYNONYMOUS_CODING Xpd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	11967196	2L_11967196_SNP [dm3] 2L_11967196_SNP [dm6]	A	G	6.549e^-4	0.91	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2R	7878293	2R_7878293_SNP [dm3] 2R_11990788_SNP [dm6]	T	C	6.555e^-4	0.91	SYNONYMOUS_CODING CG8298	TF binding site mE1_TFBS_cad
2R	7878301	2R_7878301_SNP [dm3] 2R_11990796_SNP [dm6]	T	A	6.555e^-4	0.91	SYNONYMOUS_CODING CG8298	TF binding site mE1_TFBS_cad
2R	7878354	2R_7878354_SNP [dm3] 2R_11990849_SNP [dm6]	C	T	6.555e^-4	0.91	NON_SYNONYMOUS_CODING CG8298	TF binding site mE1_TFBS_cad
2R	7878499	2R_7878499_SNP [dm3] 2R_11990994_SNP [dm6]	A	T	6.555e^-4	0.91	INTRON CG8298	TF binding site mE1_TFBS_cad
2R	7878506	2R_7878506_SNP [dm3] 2R_11991001_SNP [dm6]	A	C	6.555e^-4	0.91	INTRON CG8298	TF binding site mE1_TFBS_cad
2R	7878509	2R_7878509_SNP [dm3] 2R_11991004_SNP [dm6]	T	A	6.555e^-4	0.91	INTRON CG8298	TF binding site mE1_TFBS_cad
2R	7878516	2R_7878516_SNP [dm3] 2R_11991011_SNP [dm6]	G	T	6.555e^-4	0.91	INTRON CG8298	TF binding site mE1_TFBS_cad
2R	7878528	2R_7878528_SNP [dm3] 2R_11991023_SNP [dm6]	T	A	6.555e^-4	0.91	INTRON CG8298	TF binding site mE1_TFBS_cad
2R	6914049	2R_6914049_SNP [dm3] 2R_11026544_SNP [dm6]	T	G	6.563e^-4	0.91	INTRON luna
X	993929	X_993929_SNP [dm3] X_1099896_SNP [dm6]	T	C	6.566e^-4	0.91	INTRON CG3655	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3773778	X_3773778_SNP [dm3] X_3879745_SNP [dm6]	T	C	6.580e^-4	0.91	SYNONYMOUS_CODING CG2930 DOWNSTREAM CG2930	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	21881909	3L_21881909_SNP [dm3] 3L_21888809_SNP [dm6]	C	A	6.592e^-4	0.91	INTRON mub	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15481468	X_15481468_SNP [dm3] X_15587435_SNP [dm6]	T	G	6.639e^-4	0.91	SYNONYMOUS_CODING CG9220 UPSTREAM CG8105	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	15225218	2L_15225218_SNP [dm3] 2L_15225218_SNP [dm6]	A	T	6.641e^-4	0.91	INTERGENIC
2R	16168775	2R_16168775_SNP [dm3] 2R_20281270_SNP [dm6]	C	A	6.642e^-4	0.91	UPSTREAM CG9090 DOWNSTREAM CG16868 INTERGENIC
2R	14788254	2R_14788254_SNP [dm3] 2R_18900749_SNP [dm6]	C	G	6.647e^-4	0.91	INTRON sano
X	5465006	X_5465006_SNP [dm3] X_5570973_SNP [dm6]	C	T	6.661e^-4	0.91	INTERGENIC
3R	9884028	3R_9884028_SNP [dm3] 3R_14058306_SNP [dm6]	G	A	6.664e^-4	0.91	INTRON foxo
2R	15853425	2R_15853425_SNP [dm3] 2R_19965920_SNP [dm6]	A	T	6.666e^-4	0.91	INTERGENIC
3R	3552514	3R_3552514_SNP [dm3] 3R_7726792_SNP [dm6]	G	T	6.668e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14846159	3R_14846159_SNP [dm3] 3R_19020437_SNP [dm6]	G	A	6.697e^-4	0.91	DOWNSTREAM gukh INTRON gukh
X	936347	X_936347_SNP [dm3] X_1042314_SNP [dm6]	C	A	6.698e^-4	0.91	SYNONYMOUS_CODING su_w[a]_ UTR_5_PRIME su_w[a]_ UTR_3_PRIME su_w[a]_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	18427601	3R_18427601_SNP [dm3] 3R_22601879_SNP [dm6]	A	G	6.702e^-4	0.91	INTRON Efa6	TF binding site mE1_TFBS_cad
3R	18427611	3R_18427611_SNP [dm3] 3R_22601889_SNP [dm6]	T	A	6.702e^-4	0.91	INTRON Efa6	TF binding site mE1_TFBS_cad
X	942455	X_942455_SNP [dm3] X_1048422_SNP [dm6]	G	C	6.709e^-4	0.91	INTRON CR44779
2L	20146604	2L_20146604_SNP [dm3] 2L_20146604_SNP [dm6]	G	A	6.714e^-4	0.91	INTERGENIC
2L	20146645	2L_20146645_SNP [dm3] 2L_20146645_SNP [dm6]	C	T	6.714e^-4	0.91	INTERGENIC
2L	12386805	2L_12386805_SNP [dm3] 2L_12386805_SNP [dm6]	T	G	6.723e^-4	0.91	INTRON bru-2
3R	9087321	3R_9087321_SNP [dm3] 3R_13261599_SNP [dm6]	G	A	6.729e^-4	0.91	SPLICE_SITE_REGION CG11686 INTRON CG11686
3R	9087329	3R_9087329_SNP [dm3] 3R_13261607_SNP [dm6]	G	A	6.729e^-4	0.91	SPLICE_SITE_REGION CG11686 UTR_5_PRIME CG11686
3L	7290004	3L_7290004_SNP [dm3] 3L_7296904_SNP [dm6]	A	T	6.742e^-4	0.91	INTRON unc-13-4A
2R	16505970	2R_16505970_SNP [dm3] 2R_20618465_SNP [dm6]	T	C	6.751e^-4	0.91	UPSTREAM CG9945 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	5473028	X_5473028_SNP [dm3] X_5578995_SNP [dm6]	G	C	6.765e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA
3L	12209949	3L_12209949_SNP [dm3] 3L_12216849_SNP [dm6]	G	A	6.771e^-4	0.91	INTRON app
3L	15286762	3L_15286762_SNP [dm3] 3L_15293662_SNP [dm6]	C	T	6.792e^-4	0.91	INTERGENIC
2L	1365559	2L_1365559_SNP [dm3] 2L_1365559_SNP [dm6]	A	C	6.802e^-4	0.91	INTERGENIC
3R	17477940	3R_17477940_DEL [dm3] 3R_21652218_DEL [dm6]	TG	T	6.812e^-4	0.91	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	7206929	X_7206929_SNP [dm3] X_7312896_SNP [dm6]	A	T	6.813e^-4	0.91	INTRON CR44357 & 1 other
X	14803104	X_14803104_SNP [dm3] X_14909071_SNP [dm6]	G	C	6.815e^-4	0.91	UTR_5_PRIME CG9509 UPSTREAM CG9509 DOWNSTREAM CG14406 INTRON Flo2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13317312	3L_13317312_SNP [dm3] 3L_13324212_SNP [dm6]	C	T	6.816e^-4	0.91	DOWNSTREAM CR44558 INTERGENIC
3R	11228132	3R_11228132_SNP [dm3] 3R_15402410_SNP [dm6]	A	C	6.821e^-4	0.91	UTR_3_PRIME Rbp DOWNSTREAM CG6125
3R	21431822	3R_21431822_SNP [dm3] 3R_25606100_SNP [dm6]	T	C	6.824e^-4	0.91	UTR_3_PRIME msi INTRON ymp
2L	20246915	2L_20246915_SNP [dm3] 2L_20246915_SNP [dm6]	G	T	6.826e^-4	0.91	INTERGENIC
2L	2502043	2L_2502043_SNP [dm3] 2L_2502043_SNP [dm6]	G	A	6.851e^-4	0.91	INTERGENIC
3L	19210541	3L_19210541_SNP [dm3] 3L_19217441_SNP [dm6]	A	C	6.863e^-4	0.91	INTRON fz2
3L	9395745	3L_9395745_SNP [dm3] 3L_9402645_SNP [dm6]	G	T	6.884e^-4	0.91	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9395751	3L_9395751_SNP [dm3] 3L_9402651_SNP [dm6]	C	G	6.884e^-4	0.91	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9395757	3L_9395757_SNP [dm3] 3L_9402657_SNP [dm6]	T	C	6.884e^-4	0.91	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	20329377	3R_20329377_SNP [dm3] 3R_24503655_SNP [dm6]	C	A	6.889e^-4	0.91	INTERGENIC
3L	18021814	3L_18021814_SNP [dm3] 3L_18028714_SNP [dm6]	T	G	6.891e^-4	0.91	INTRON Eip75B
3L	4339720	3L_4339720_DEL [dm3] 3L_4339720_DEL [dm6]	TGATTGCTT	T	6.893e^-4	0.91	INTRON Cip4
2R	13940881	2R_13940881_SNP [dm3] 2R_18053376_SNP [dm6]	A	T	6.896e^-4	0.91	INTRON CG10911	TF binding site mE1_TFBS_cad
3R	23018962	3R_23018962_SNP [dm3] 3R_27193240_SNP [dm6]	A	G	6.899e^-4	0.91	INTRON Ser	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb mE1_TFBS_Trl
X	16773193	X_16773193_SNP [dm3] X_16879160_SNP [dm6]	A	G	6.916e^-4	0.91	INTERGENIC
2L	16375050	2L_16375050_SNP [dm3] 2L_16375050_SNP [dm6]	T	G	6.921e^-4	0.91	INTERGENIC
2L	14003494	2L_14003494_SNP [dm3] 2L_14003494_SNP [dm6]	C	G	6.930e^-4	0.91	INTERGENIC
2L	22078873	2L_22078873_SNP [dm3] 2L_22078873_SNP [dm6]	G	T	6.933e^-4	0.91	UPSTREAM ttm3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9640653	3L_9640653_SNP [dm3] 3L_9647553_SNP [dm6]	T	A	6.933e^-4	0.91	INTRON fry & 1 other
3L	9640656	3L_9640656_INS [dm3] 3L_9647556_INS [dm6]	T	TAT	6.933e^-4	0.91	INTRON fry & 1 other
3L	14767012	3L_14767012_SNP [dm3] 3L_14773912_SNP [dm6]	C	T	6.948e^-4	0.91	SYNONYMOUS_CODING mop
2L	720463	2L_720463_SNP [dm3] 2L_720463_SNP [dm6]	T	G	6.958e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	720464	2L_720464_SNP [dm3] 2L_720464_SNP [dm6]	A	G	6.958e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4074129	2R_4074129_SNP [dm3] 2R_8186624_SNP [dm6]	T	A	6.963e^-4	0.91	INTRON LRP1
X	8084224	X_8084224_SNP [dm3] X_8190191_SNP [dm6]	A	T	6.967e^-4	0.91	INTRON sdt
3L	7628113	3L_7628113_SNP [dm3] 3L_7635013_SNP [dm6]	A	T	6.993e^-4	0.91	INTRON CG33275	TF binding site mE1_TFBS_HSA
2R	9476930	2R_9476930_SNP [dm3] 2R_13589425_SNP [dm6]	C	G	7.000e^-4	0.91	INTRON CG6191 & 1 other
2L	10961233	2L_10961233_SNP [dm3] 2L_10961233_SNP [dm6]	G	T	7.000e^-4	0.91	UTR_5_PRIME dpr2
3L	16194787	3L_16194787_SNP [dm3] 3L_16201687_SNP [dm6]	T	C	7.006e^-4	0.91	SYNONYMOUS_CODING CG33690 DOWNSTREAM CG33689
2L	1395452	2L_1395452_SNP [dm3] 2L_1395452_SNP [dm6]	T	C	7.011e^-4	0.91	INTRON lea
3L	21395435	3L_21395435_SNP [dm3] 3L_21402335_SNP [dm6]	A	G	7.018e^-4	0.91	INTRON rgn
3L	7542889	3L_7542889_SNP [dm3] 3L_7549789_SNP [dm6]	T	G	7.024e^-4	0.91	INTERGENIC
X	989555	X_989555_SNP [dm3] X_1095522_SNP [dm6]	C	T	7.030e^-4	0.91	INTRON CG3655
X	989583	X_989583_SNP [dm3] X_1095550_SNP [dm6]	C	G	7.030e^-4	0.91	INTRON CG3655
X	989937	X_989937_SNP [dm3] X_1095904_SNP [dm6]	G	A	7.030e^-4	0.91	INTRON CG3655
X	990252	X_990252_DEL [dm3] X_1096219_DEL [dm6]	GCTTAAGTCG	G	7.030e^-4	0.91	INTRON CG3655
X	990274	X_990274_SNP [dm3] X_1096241_SNP [dm6]	A	G	7.030e^-4	0.91	INTRON CG3655
X	990577	X_990577_SNP [dm3] X_1096544_SNP [dm6]	T	A	7.030e^-4	0.91	INTRON CG3655
X	991827	X_991827_SNP [dm3] X_1097794_SNP [dm6]	C	T	7.030e^-4	0.91	INTRON CG3655
X	992963	X_992963_SNP [dm3] X_1098930_SNP [dm6]	G	A	7.030e^-4	0.91	INTRON CG3655
X	993008	X_993008_SNP [dm3] X_1098975_SNP [dm6]	G	T	7.030e^-4	0.91	INTRON CG3655
3L	8235077	3L_8235077_SNP [dm3] 3L_8241977_SNP [dm6]	A	C	7.044e^-4	0.91	INTRON Dscam4
3R	12325835	3R_12325835_SNP [dm3] 3R_16500113_SNP [dm6]	C	T	7.075e^-4	0.91	INTRON decay
3L	1616545	3L_1616545_SNP [dm3] 3L_1616545_SNP [dm6]	G	A	7.078e^-4	0.91	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170 UPSTREAM CG12105 DOWNSTREAM CG13926
3L	3499353	3L_3499353_SNP [dm3] 3L_3499353_SNP [dm6]	C	A	7.080e^-4	0.91	INTRON CG42324
3L	758231	3L_758231_SNP [dm3] 3L_758231_SNP [dm6]	T	C	7.090e^-4	0.91	INTERGENIC
3R	15008206	3R_15008206_SNP [dm3] 3R_19182484_SNP [dm6]	T	A	7.098e^-4	0.91	INTRON CG31475
2L	8663081	2L_8663081_SNP [dm3] 2L_8663081_SNP [dm6]	A	G	7.098e^-4	0.91	SYNONYMOUS_CODING Sema-1a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1968245	3L_1968245_SNP [dm3] 3L_1968245_SNP [dm6]	G	A	7.103e^-4	0.91	UPSTREAM CG1927 INTRON CG1927	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2734381	3L_2734381_SNP [dm3] 3L_2734381_SNP [dm6]	A	G	7.106e^-4	0.91	INTRON Mrtf
3L	5679203	3L_5679203_SNP [dm3] 3L_5686103_SNP [dm6]	C	G	7.112e^-4	0.91	INTRON sif
2L	2546940	2L_2546940_SNP [dm3] 2L_2546940_SNP [dm6]	T	A	7.141e^-4	0.91	INTERGENIC
3L	15982639	3L_15982639_SNP [dm3] 3L_15989539_SNP [dm6]	T	C	7.144e^-4	0.91	SYNONYMOUS_CODING Hip14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	15669489	X_15669489_SNP [dm3] X_15775456_SNP [dm6]	T	A	7.151e^-4	0.91	INTRON CG43672
3R	7064545	3R_7064545_INS [dm3] 3R_11238823_INS [dm6]	T	TATGAT	7.154e^-4	0.91	FRAME_SHIFT CG31388 INTRON CG31388	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	22519467	2L_22519467_SNP [dm3] 2L_22626735_SNP [dm6]	T	A	7.179e^-4	0.91	INTRON CG40006
2L	5240933	2L_5240933_SNP [dm3] 2L_5240933_SNP [dm6]	G	A	7.183e^-4	0.91	DOWNSTREAM tRNA:CR31914 & 1 other INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17311511	3L_17311511_SNP [dm3] 3L_17318411_SNP [dm6]	T	C	7.191e^-4	0.91	INTERGENIC
2L	15632228	2L_15632228_SNP [dm3] 2L_15632228_SNP [dm6]	T	A	7.208e^-4	0.91	UTR_3_PRIME CG18480
2R	6327371	2R_6327371_SNP [dm3] 2R_10439866_SNP [dm6]	C	G	7.213e^-4	0.91	INTRON Galphao	TF binding site BDTNP1_TFBS_twi
2R	6327387	2R_6327387_SNP [dm3] 2R_10439882_SNP [dm6]	G	A	7.213e^-4	0.91	INTRON Galphao	TF binding site BDTNP1_TFBS_twi
2R	16967688	2R_16967688_SNP [dm3] 2R_21080183_SNP [dm6]	A	T	7.236e^-4	0.91	UPSTREAM Treh INTRON Treh
X	7264413	X_7264413_SNP [dm3] X_7370380_SNP [dm6]	C	G	7.242e^-4	0.91	INTRON CG1677 & 1 other

By genomic position
Variant impact
Gene name

N phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results