DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.281e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1893 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	11649339	3L_11649339_SNP [dm3] 3L_11656239_SNP [dm6]	A	T	1.517e^-7	0.267	UPSTREAM mir-274 INTRON CG32085
3L	11649711	3L_11649711_SNP [dm3] 3L_11656611_SNP [dm6]	T	A	5.246e^-7	0.462	UPSTREAM mir-274 INTRON CG32085
X	19364133	X_19364133_SNP [dm3] X_19470100_SNP [dm6]	A	G	1.024e^-6	0.507	UTR_3_PRIME kek5 DOWNSTREAM kek5	TF binding site mE1_TFBS_cad
X	8423297	X_8423297_SNP [dm3] X_8529264_SNP [dm6]	C	A	1.151e^-6	0.507	INTRON Nrg & 1 other	TF binding site mE1_TFBS_cad
X	21931868	X_21931868_SNP [dm3] X_22530032_SNP [dm6]	C	T	3.167e^-6	0.704	UTR_5_PRIME S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	13877716	2L_13877716_SNP [dm3] 2L_13877716_SNP [dm6]	A	G	3.283e^-6	0.704	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13471274	3R_13471274_SNP [dm3] 3R_17645552_SNP [dm6]	C	T	3.291e^-6	0.704	UPSTREAM tRNA:CR31578 & 2 others DOWNSTREAM CG43175 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	13716844	2L_13716844_SNP [dm3] 2L_13716844_SNP [dm6]	C	G	4.233e^-6	0.704	INTRON CG31814
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	5.179e^-6	0.704	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	11321086	X_11321086_SNP [dm3] X_11427053_SNP [dm6]	T	C	5.756e^-6	0.704	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13473654	3R_13473654_SNP [dm3] 3R_17647932_SNP [dm6]	C	G	5.809e^-6	0.704	UTR_5_PRIME CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	6391147	2L_6391147_SNP [dm3] 2L_6391147_SNP [dm6]	A	G	6.441e^-6	0.704	SYNONYMOUS_CODING CG42368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11650223	3L_11650223_SNP [dm3] 3L_11657123_SNP [dm6]	A	G	6.607e^-6	0.704	DOWNSTREAM mir-274 INTRON CG32085
2R	10820287	2R_10820287_SNP [dm3] 2R_14932782_SNP [dm6]	C	T	7.282e^-6	0.704	UPSTREAM CG12853 INTRON CG10253
2L	12527584	2L_12527584_SNP [dm3] 2L_12527584_SNP [dm6]	A	T	7.418e^-6	0.704	INTRON bun	TF binding site BDTNP1_TFBS_dl
3L	12447176	3L_12447176_SNP [dm3] 3L_12454076_SNP [dm6]	G	T	7.779e^-6	0.704	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	12447179	3L_12447179_SNP [dm3] 3L_12454079_SNP [dm6]	T	A	7.779e^-6	0.704	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	13716643	2L_13716643_SNP [dm3] 2L_13716643_SNP [dm6]	T	G	8.160e^-6	0.704	INTRON CG31814
X	19364153	X_19364153_SNP [dm3] X_19470120_SNP [dm6]	C	T	8.196e^-6	0.704	UTR_3_PRIME kek5 DOWNSTREAM kek5	TF binding site mE1_TFBS_cad
3R	9955163	3R_9955163_SNP [dm3] 3R_14129441_SNP [dm6]	A	G	8.372e^-6	0.704	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11649398	3L_11649398_SNP [dm3] 3L_11656298_SNP [dm6]	T	C	8.399e^-6	0.704	UPSTREAM mir-274 INTRON CG32085
3L	10923226	3L_10923226_SNP [dm3] 3L_10930126_SNP [dm6]	C	T	9.538e^-6	0.763	INTERGENIC
2L	13411777	2L_13411777_SNP [dm3] 2L_13411777_SNP [dm6]	C	T	1.012e^-5	0.775	UPSTREAM CG16848 & 1 other DOWNSTREAM CG7110 INTERGENIC
3R	13473665	3R_13473665_SNP [dm3] 3R_17647943_SNP [dm6]	T	C	1.089e^-5	0.795	UTR_5_PRIME CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	13473998	3R_13473998_SNP [dm3] 3R_17648276_SNP [dm6]	C	A	1.234e^-5	0.795	INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	14739112	3R_14739112_SNP [dm3] 3R_18913390_SNP [dm6]	A	C	1.251e^-5	0.795	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2L	9606736	2L_9606736_SNP [dm3] 2L_9606736_SNP [dm6]	T	G	1.385e^-5	0.795	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2L	3387669	2L_3387669_SNP [dm3] 2L_3387669_SNP [dm6]	A	G	1.469e^-5	0.795	NON_SYNONYMOUS_CODING Sfp23F UPSTREAM CR45301 DOWNSTREAM CG42460
3R	3790477	3R_3790477_SNP [dm3] 3R_7964755_SNP [dm6]	G	A	1.494e^-5	0.795	INTRON dsx
3R	3790480	3R_3790480_SNP [dm3] 3R_7964758_SNP [dm6]	G	A	1.494e^-5	0.795	INTRON dsx
2L	13876299	2L_13876299_SNP [dm3] 2L_13876299_SNP [dm6]	G	C	1.536e^-5	0.795	INTRON CenG1A
3R	25370157	3R_25370157_SNP [dm3] 3R_29544435_SNP [dm6]	C	T	1.537e^-5	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_sens
X	19520168	X_19520168_SNP [dm3] X_19626135_SNP [dm6]	G	A	1.617e^-5	0.795	NON_SYNONYMOUS_CODING CG14212 DOWNSTREAM MKP-4 & 1 other	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3380673	2L_3380673_SNP [dm3] 2L_3380673_SNP [dm6]	T	A	1.673e^-5	0.795	INTERGENIC
2L	14359817	2L_14359817_SNP [dm3] 2L_14359817_SNP [dm6]	T	C	1.813e^-5	0.795	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13471268	3R_13471268_SNP [dm3] 3R_17645546_SNP [dm6]	G	C	1.831e^-5	0.795	UPSTREAM tRNA:CR31578 & 2 others DOWNSTREAM CG43175 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	2717863	2R_2717863_SNP [dm3] 2R_6830358_SNP [dm6]	G	T	2.152e^-5	0.795	DOWNSTREAM CG34215 INTRON CG15236
2L	13412120	2L_13412120_SNP [dm3] 2L_13412120_SNP [dm6]	T	G	2.234e^-5	0.795	UPSTREAM CG16848 & 1 other INTERGENIC
2R	16998554	2R_16998554_SNP [dm3] 2R_21111049_SNP [dm6]	A	T	2.257e^-5	0.795	INTRON ktub
2R	19024962	2R_19024962_INS [dm3] 2R_23137439_INS [dm6]	A	AA	2.340e^-5	0.795	INTERGENIC
3R	5267763	3R_5267763_SNP [dm3] 3R_9442041_SNP [dm6]	T	A	2.347e^-5	0.795	INTRON ps
2R	18604862	2R_18604862_SNP [dm3] 2R_22717357_SNP [dm6]	T	A	2.367e^-5	0.795	UTR_3_PRIME jbug DOWNSTREAM CG30268
2L	2851118	2L_2851118_SNP [dm3] 2L_2851118_SNP [dm6]	C	T	2.370e^-5	0.795	INTRON CG3104
2L	2851122	2L_2851122_SNP [dm3] 2L_2851122_SNP [dm6]	C	G	2.370e^-5	0.795	INTRON CG3104
3R	11234734	3R_11234734_SNP [dm3] 3R_15409012_SNP [dm6]	T	C	2.405e^-5	0.795	START_GAINED Atx2 UTR_5_PRIME Atx2 UPSTREAM Atx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11234777	3R_11234777_SNP [dm3] 3R_15409055_SNP [dm6]	C	T	2.405e^-5	0.795	UTR_5_PRIME Atx2 UPSTREAM Atx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17457632	2L_17457632_SNP [dm3] 2L_17457632_SNP [dm6]	G	T	2.429e^-5	0.795	SYNONYMOUS_CODING CG18563 INTRON CG5050	TF binding site mE1_TFBS_cad
2L	17457657	2L_17457657_SNP [dm3] 2L_17457657_SNP [dm6]	A	G	2.429e^-5	0.795	NON_SYNONYMOUS_CODING CG18563 INTRON CG5050	TF binding site mE1_TFBS_cad
X	7998017	X_7998017_SNP [dm3] X_8103984_SNP [dm6]	G	A	2.477e^-5	0.795	INTRON Gclc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19735599	2R_19735599_SNP [dm3] 2R_23848076_SNP [dm6]	G	C	2.484e^-5	0.795	UTR_3_PRIME ytr	TF binding site mE1_TFBS_chinmo
2R	19551007	2R_19551007_SNP [dm3] 2R_23663484_SNP [dm6]	A	C	2.528e^-5	0.795	INTRON Pde8	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	14905574	X_14905574_SNP [dm3] X_15011541_SNP [dm6]	C	T	2.550e^-5	0.795	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2L	13877686	2L_13877686_SNP [dm3] 2L_13877686_SNP [dm6]	C	T	2.715e^-5	0.795	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13118125	3L_13118125_SNP [dm3] 3L_13125025_SNP [dm6]	G	C	2.853e^-5	0.795	INTERGENIC	TF binding site mE1_TFBS_sens
2R	12289145	2R_12289145_SNP [dm3] 2R_16401640_SNP [dm6]	T	A	2.915e^-5	0.795	INTRON Sema-2b
3L	3296481	3L_3296481_SNP [dm3] 3L_3296481_SNP [dm6]	G	A	2.952e^-5	0.795	NON_SYNONYMOUS_CODING CG12009	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	4952225	2L_4952225_SNP [dm3] 2L_4952225_SNP [dm6]	C	T	2.968e^-5	0.795	DOWNSTREAM Jon25Bii INTERGENIC	TF binding site mE1_TFBS_cad
X	21931315	X_21931315_SNP [dm3] X_22529479_SNP [dm6]	A	G	2.990e^-5	0.795	UPSTREAM S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	16013909	2L_16013909_SNP [dm3] 2L_16013909_SNP [dm6]	T	A	3.007e^-5	0.795	INTRON beat-Ic
3R	25391719	3R_25391719_DEL [dm3] 3R_29565997_DEL [dm6]	GTGG	G	3.096e^-5	0.795	DOWNSTREAM Dr INTERGENIC
3L	13310278	3L_13310278_SNP [dm3] 3L_13317178_SNP [dm6]	C	G	3.283e^-5	0.795	INTERGENIC
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	3.283e^-5	0.795	INTERGENIC
2L	12527657	2L_12527657_SNP [dm3] 2L_12527657_SNP [dm6]	T	A	3.293e^-5	0.795	INTRON bun	TF binding site BDTNP1_TFBS_dl
3R	5091823	3R_5091823_SNP [dm3] 3R_9266101_SNP [dm6]	T	A	3.306e^-5	0.795	UPSTREAM Vps16A INTRON Aats-trp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	7083128	X_7083128_SNP [dm3] X_7189095_SNP [dm6]	A	T	3.314e^-5	0.795	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	5234075	2R_5234075_SNP [dm3] 2R_9346570_SNP [dm6]	T	G	3.333e^-5	0.795	SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
3R	5374907	3R_5374907_DEL [dm3] 3R_9549185_DEL [dm6]	GG	G	3.343e^-5	0.795	INTRON mura EXON CR42549	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5129777	3R_5129777_SNP [dm3] 3R_9304055_SNP [dm6]	A	C	3.380e^-5	0.795	INTRON CG8861
3R	10165866	3R_10165866_SNP [dm3] 3R_14340144_SNP [dm6]	G	T	3.386e^-5	0.795	INTRON NK7.1
X	9421316	X_9421316_SNP [dm3] X_9527283_SNP [dm6]	A	C	3.408e^-5	0.795	INTRON CG32700
2R	17678420	2R_17678420_SNP [dm3] 2R_21790915_SNP [dm6]	A	G	3.633e^-5	0.795	SYNONYMOUS_CODING lox2
2L	3692670	2L_3692670_SNP [dm3] 2L_3692670_SNP [dm6]	G	A	3.634e^-5	0.795	UPSTREAM CG16704 DOWNSTREAM CG3513 & 2 others INTERGENIC
3R	9956819	3R_9956819_SNP [dm3] 3R_14131097_SNP [dm6]	G	C	3.679e^-5	0.795	SYNONYMOUS_CODING CG14356 DOWNSTREAM RpII140	TF binding site mE1_TFBS_cad
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	3.744e^-5	0.795	INTERGENIC
2L	3388307	2L_3388307_SNP [dm3] 2L_3388307_SNP [dm6]	C	A	3.790e^-5	0.795	UPSTREAM Sfp23F INTRON CG42460
2R	10820197	2R_10820197_SNP [dm3] 2R_14932692_SNP [dm6]	T	A	4.082e^-5	0.795	UPSTREAM CG12853 INTRON CG10253
X	8423218	X_8423218_SNP [dm3] X_8529185_SNP [dm6]	T	G	4.139e^-5	0.795	INTRON Nrg & 1 other	TF binding site mE1_TFBS_cad
2R	18361679	2R_18361679_SNP [dm3] 2R_22474174_SNP [dm6]	C	T	4.151e^-5	0.795	INTRON CG45062	TF binding site mE1_TFBS_cad
2L	4317869	2L_4317869_SNP [dm3] 2L_4317869_SNP [dm6]	A	T	4.214e^-5	0.795	INTRON tutl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9873427	3L_9873427_SNP [dm3] 3L_9880327_SNP [dm6]	A	G	4.258e^-5	0.795	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
3L	18248575	3L_18248575_SNP [dm3] 3L_18255475_SNP [dm6]	A	T	4.337e^-5	0.795	INTERGENIC
2L	3387655	2L_3387655_SNP [dm3] 2L_3387655_SNP [dm6]	T	A	4.341e^-5	0.795	SYNONYMOUS_CODING Sfp23F UPSTREAM CR45301 DOWNSTREAM CG42460
2L	3387656	2L_3387656_SNP [dm3] 2L_3387656_SNP [dm6]	G	A	4.341e^-5	0.795	NON_SYNONYMOUS_CODING Sfp23F UPSTREAM CR45301 DOWNSTREAM CG42460
3L	16658080	3L_16658080_DEL [dm3] 3L_16664980_DEL [dm6]	TT	T	4.594e^-5	0.795	INTRON Galphaf
2R	19551009	2R_19551009_INS [dm3] 2R_23663486_INS [dm6]	A	GC	4.842e^-5	0.795	INTRON Pde8	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5412902	2L_5412902_SNP [dm3] 2L_5412902_SNP [dm6]	T	C	4.860e^-5	0.795	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2135350	3R_2135350_SNP [dm3] 3R_6309628_SNP [dm6]	A	G	5.016e^-5	0.795	UPSTREAM CG31560 & 1 other INTERGENIC
2L	4326359	2L_4326359_SNP [dm3] 2L_4326359_SNP [dm6]	T	C	5.081e^-5	0.795	INTRON CG16857
2L	12527578	2L_12527578_SNP [dm3] 2L_12527578_SNP [dm6]	C	A	5.150e^-5	0.795	INTRON bun	TF binding site BDTNP1_TFBS_dl
2L	12527581	2L_12527581_SNP [dm3] 2L_12527581_SNP [dm6]	A	G	5.150e^-5	0.795	INTRON bun	TF binding site BDTNP1_TFBS_dl
X	7082997	X_7082997_SNP [dm3] X_7188964_SNP [dm6]	T	A	5.551e^-5	0.795	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	1646015	2R_1646015_SNP [dm3] 2R_5758510_SNP [dm6]	T	C	5.555e^-5	0.795	SYNONYMOUS_CODING CG7791 DOWNSTREAM CG34200	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3380094	2L_3380094_SNP [dm3] 2L_3380094_SNP [dm6]	C	A	5.574e^-5	0.795	INTERGENIC
2L	3380110	2L_3380110_SNP [dm3] 2L_3380110_SNP [dm6]	T	A	5.574e^-5	0.795	INTERGENIC
2R	19735564	2R_19735564_SNP [dm3] 2R_23848041_SNP [dm6]	C	G	5.641e^-5	0.795	UTR_3_PRIME ytr	TF binding site mE1_TFBS_chinmo
X	16871558	X_16871558_SNP [dm3] X_16977525_SNP [dm6]	G	A	5.702e^-5	0.795	INTRON CG45002
2L	9463855	2L_9463855_SNP [dm3] 2L_9463855_SNP [dm6]	C	T	5.709e^-5	0.795	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
2L	9851017	2L_9851017_SNP [dm3] 2L_9851017_SNP [dm6]	T	G	5.750e^-5	0.795	INTRON nAChRalpha6
3L	11669478	3L_11669478_SNP [dm3] 3L_11676378_SNP [dm6]	A	T	5.840e^-5	0.795	INTRON CG32085
2L	8986584	2L_8986584_SNP [dm3] 2L_8986584_SNP [dm6]	G	A	5.896e^-5	0.795	INTRON rost
2L	5434922	2L_5434922_SNP [dm3] 2L_5434922_SNP [dm6]	C	A	6.135e^-5	0.795	UPSTREAM CR43715 DOWNSTREAM CR31647 INTERGENIC	TF binding site mE1_TFBS_Kr
2L	7389894	2L_7389894_SNP [dm3] 2L_7389894_SNP [dm6]	G	T	6.173e^-5	0.795	SYNONYMOUS_CODING gudu
3R	13472395	3R_13472395_SNP [dm3] 3R_17646673_SNP [dm6]	T	C	6.192e^-5	0.795	DOWNSTREAM tRNA:CR31578 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	4182643	2R_4182643_SNP [dm3] 2R_8295138_SNP [dm6]	C	T	6.249e^-5	0.795	INTERGENIC
3L	15562758	3L_15562758_SNP [dm3] 3L_15569658_SNP [dm6]	C	G	6.333e^-5	0.795	SYNONYMOUS_CODING CG6498	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21380071	3R_21380071_SNP [dm3] 3R_25554349_SNP [dm6]	T	C	6.333e^-5	0.795	INTRON msi
2R	15592065	2R_15592065_SNP [dm3] 2R_19704560_SNP [dm6]	T	G	6.358e^-5	0.795	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
2R	20172293	2R_20172293_SNP [dm3] 2R_24284770_SNP [dm6]	C	T	6.387e^-5	0.795	INTRON nvy
2R	8914876	2R_8914876_SNP [dm3] 2R_13027371_SNP [dm6]	G	A	6.495e^-5	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	6.497e^-5	0.795	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	3752074	2L_3752074_SNP [dm3] 2L_3752074_SNP [dm6]	C	T	6.584e^-5	0.795	NON_SYNONYMOUS_CODING CG10019
2R	10035311	2R_10035311_SNP [dm3] 2R_14147806_SNP [dm6]	C	A	6.608e^-5	0.795	DOWNSTREAM Rcd1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	15320685	3L_15320685_SNP [dm3] 3L_15327585_SNP [dm6]	A	T	6.646e^-5	0.795	INTERGENIC
3L	8321056	3L_8321056_INS [dm3] 3L_8327956_INS [dm6]	C	CTC	6.657e^-5	0.795	UTR_3_PRIME CG34461 UPSTREAM CG34462 DOWNSTREAM CG34461	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	2695482	X_2695482_SNP [dm3] X_2801449_SNP [dm6]	C	T	6.698e^-5	0.795	INTRON kirre
2L	7154262	2L_7154262_SNP [dm3] 2L_7154262_SNP [dm6]	G	A	6.902e^-5	0.795	INTRON Pvf3
3L	15836135	3L_15836135_SNP [dm3] 3L_15843035_SNP [dm6]	G	A	6.913e^-5	0.795	DOWNSTREAM mir-263b INTRON CG32150
2L	3388090	2L_3388090_SNP [dm3] 2L_3388090_SNP [dm6]	T	A	7.027e^-5	0.795	UTR_3_PRIME CG42460 UPSTREAM CR45301 & 1 other
2L	3388101	2L_3388101_SNP [dm3] 2L_3388101_SNP [dm6]	T	C	7.027e^-5	0.795	NON_SYNONYMOUS_CODING CG42460 UPSTREAM CR45301 & 1 other
3R	6503951	3R_6503951_SNP [dm3] 3R_10678229_SNP [dm6]	T	C	7.031e^-5	0.795	UPSTREAM CG6465 INTRON CG14688	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	11596613	3L_11596613_SNP [dm3] 3L_11603513_SNP [dm6]	A	G	7.200e^-5	0.795	INTRON CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10820146	2R_10820146_SNP [dm3] 2R_14932641_SNP [dm6]	A	G	7.315e^-5	0.795	UPSTREAM CG12853 INTRON CG10253
2R	10820199	2R_10820199_SNP [dm3] 2R_14932694_SNP [dm6]	C	T	7.315e^-5	0.795	UPSTREAM CG12853 INTRON CG10253
2R	10820203	2R_10820203_SNP [dm3] 2R_14932698_SNP [dm6]	A	T	7.315e^-5	0.795	UPSTREAM CG12853 INTRON CG10253
2R	10820209	2R_10820209_SNP [dm3] 2R_14932704_SNP [dm6]	C	A	7.315e^-5	0.795	UPSTREAM CG12853 INTRON CG10253
2R	10820226	2R_10820226_SNP [dm3] 2R_14932721_SNP [dm6]	A	T	7.315e^-5	0.795	UPSTREAM CG12853 INTRON CG10253
2R	10820227	2R_10820227_SNP [dm3] 2R_14932722_SNP [dm6]	A	T	7.315e^-5	0.795	UPSTREAM CG12853 INTRON CG10253
2R	10820250	2R_10820250_SNP [dm3] 2R_14932745_SNP [dm6]	A	G	7.315e^-5	0.795	UPSTREAM CG12853 INTRON CG10253
2R	10820263	2R_10820263_SNP [dm3] 2R_14932758_SNP [dm6]	C	G	7.315e^-5	0.795	UPSTREAM CG12853 INTRON CG10253
2R	10820277	2R_10820277_SNP [dm3] 2R_14932772_SNP [dm6]	G	A	7.315e^-5	0.795	UPSTREAM CG12853 INTRON CG10253
2R	10820279	2R_10820279_SNP [dm3] 2R_14932774_SNP [dm6]	A	T	7.315e^-5	0.795	UPSTREAM CG12853 INTRON CG10253
2R	10029374	2R_10029374_DEL [dm3] 2R_14141869_DEL [dm6]	TT	T	7.537e^-5	0.795	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	16427338	2R_16427338_SNP [dm3] 2R_20539833_SNP [dm6]	T	G	7.579e^-5	0.795	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16427344	2R_16427344_INS [dm3] 2R_20539839_INS [dm6]	T	TATATATATATATATATA...	7.579e^-5	0.795	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12411288	3L_12411288_SNP [dm3] 3L_12418188_SNP [dm6]	G	C	7.977e^-5	0.795	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	6225720	2R_6225720_SNP [dm3] 2R_10338215_SNP [dm6]	G	A	7.978e^-5	0.795	INTRON CG42732
2R	6225726	2R_6225726_SNP [dm3] 2R_10338221_SNP [dm6]	T	C	7.978e^-5	0.795	INTRON CG42732
2L	13757075	2L_13757075_SNP [dm3] 2L_13757075_SNP [dm6]	A	G	8.107e^-5	0.795	DOWNSTREAM CR44846 INTRON TM9SF4
3L	3131764	3L_3131764_SNP [dm3] 3L_3131764_SNP [dm6]	T	C	8.144e^-5	0.795	INTRON CG11537	TF binding site mE1_TFBS_Kr
3R	23333221	3R_23333221_SNP [dm3] 3R_27507499_SNP [dm6]	C	T	8.151e^-5	0.795	INTERGENIC
X	8798865	X_8798865_SNP [dm3] X_8904832_SNP [dm6]	T	A	8.341e^-5	0.795	UTR_3_PRIME e_r_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	709523	3L_709523_SNP [dm3] 3L_709523_SNP [dm6]	T	A	8.344e^-5	0.795	INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	709537	3L_709537_SNP [dm3] 3L_709537_SNP [dm6]	A	T	8.344e^-5	0.795	INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	709549	3L_709549_SNP [dm3] 3L_709549_SNP [dm6]	A	T	8.344e^-5	0.795	SPLICE_SITE_REGION CkIIalpha-i3 INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	709565	3L_709565_SNP [dm3] 3L_709565_SNP [dm6]	C	T	8.344e^-5	0.795	NON_SYNONYMOUS_CODING CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	8.344e^-5	0.795	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	8.344e^-5	0.795	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	8.344e^-5	0.795	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	8.344e^-5	0.795	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	8.344e^-5	0.795	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	8.344e^-5	0.795	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	8.344e^-5	0.795	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	8.344e^-5	0.795	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	8.344e^-5	0.795	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	8.344e^-5	0.795	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	8.344e^-5	0.795	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	8.344e^-5	0.795	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	10872181	X_10872181_SNP [dm3] X_10978148_SNP [dm6]	G	A	8.393e^-5	0.795	INTRON CG42339
3L	11596432	3L_11596432_SNP [dm3] 3L_11603332_SNP [dm6]	C	T	8.439e^-5	0.795	SPLICE_SITE_REGION CG7368 INTRON CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11234648	3R_11234648_SNP [dm3] 3R_15408926_SNP [dm6]	C	G	8.460e^-5	0.795	UTR_5_PRIME Atx2 UPSTREAM Atx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14389510	3R_14389510_SNP [dm3] 3R_18563788_SNP [dm6]	C	T	8.476e^-5	0.795	DOWNSTREAM CG43210 & 1 other INTERGENIC
3L	12375107	3L_12375107_SNP [dm3] 3L_12382007_SNP [dm6]	C	T	8.492e^-5	0.795	INTRON Ncc69
2R	10820187	2R_10820187_SNP [dm3] 2R_14932682_SNP [dm6]	T	A	8.782e^-5	0.795	UPSTREAM CG12853 INTRON CG10253
2L	8762745	2L_8762745_SNP [dm3] 2L_8762745_SNP [dm6]	T	G	8.813e^-5	0.795	INTERGENIC
X	7319363	X_7319363_SNP [dm3] X_7425330_SNP [dm6]	A	T	8.830e^-5	0.795	UTR_3_PRIME CG32726 UPSTREAM CG15036 DOWNSTREAM CG32726
2L	12527748	2L_12527748_SNP [dm3] 2L_12527748_SNP [dm6]	T	C	8.901e^-5	0.795	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	585691	2R_585691_SNP [dm3] 2R_4698186_SNP [dm6]	A	C	8.914e^-5	0.795	INTRON Nipped-B
X	16871593	X_16871593_SNP [dm3] X_16977560_SNP [dm6]	C	G	8.918e^-5	0.795	INTRON CG45002
3L	1692241	3L_1692241_SNP [dm3] 3L_1692241_SNP [dm6]	T	C	8.921e^-5	0.795	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13876154	2L_13876154_SNP [dm3] 2L_13876154_SNP [dm6]	G	A	9.043e^-5	0.795	INTRON CenG1A
2R	20175238	2R_20175238_SNP [dm3] 2R_24287715_SNP [dm6]	A	T	9.056e^-5	0.795	INTRON nvy	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9428857	3L_9428857_SNP [dm3] 3L_9435757_SNP [dm6]	C	T	9.107e^-5	0.795	UPSTREAM CG42526 INTRON MTF-1	TF binding site mE1_TFBS_cad
2L	7341261	2L_7341261_INS [dm3] 2L_7341261_INS [dm6]	T	TT	9.113e^-5	0.795	INTRON Wnt6	TF binding site mE1_TFBS_sbb
2L	13414010	2L_13414010_SNP [dm3] 2L_13414010_SNP [dm6]	A	C	9.117e^-5	0.795	NON_SYNONYMOUS_CODING CG16956 DOWNSTREAM CG16848
2L	19607996	2L_19607996_SNP [dm3] 2L_19607996_SNP [dm6]	G	C	9.213e^-5	0.795	INTRON Lar	TF binding site BDTNP1_TFBS_da
2R	15591974	2R_15591974_DEL [dm3] 2R_19704469_DEL [dm6]	ATATA	T	9.227e^-5	0.795	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
2R	16186636	2R_16186636_SNP [dm3] 2R_20299131_SNP [dm6]	C	A	9.246e^-5	0.795	INTERGENIC
3R	10811112	3R_10811112_SNP [dm3] 3R_14985390_SNP [dm6]	T	C	9.310e^-5	0.795	INTERGENIC
3R	10811113	3R_10811113_SNP [dm3] 3R_14985391_SNP [dm6]	G	A	9.310e^-5	0.795	INTERGENIC
2R	15877001	2R_15877001_SNP [dm3] 2R_19989496_SNP [dm6]	G	A	9.335e^-5	0.795	INTERGENIC
3R	11234636	3R_11234636_SNP [dm3] 3R_15408914_SNP [dm6]	T	C	9.433e^-5	0.795	UTR_5_PRIME Atx2 UPSTREAM Atx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	1605496	2R_1605496_SNP [dm3] 2R_5717991_SNP [dm6]	C	T	9.467e^-5	0.795	INTRON ap	TF binding site mE1_TFBS_HSA transposable element FlyBase
3R	24820064	3R_24820064_SNP [dm3] 3R_28994342_SNP [dm6]	A	C	9.493e^-5	0.795	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5412427	2L_5412427_SNP [dm3] 2L_5412427_SNP [dm6]	G	T	9.544e^-5	0.795	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19038168	3R_19038168_SNP [dm3] 3R_23212446_SNP [dm6]	A	C	9.608e^-5	0.795	INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	12527304	2L_12527304_SNP [dm3] 2L_12527304_SNP [dm6]	G	T	9.735e^-5	0.795	INTRON bun
3R	26646106	3R_26646106_SNP [dm3] 3R_30820384_SNP [dm6]	G	A	9.752e^-5	0.795	INTRON cindr	TF binding site mE1_TFBS_disco mE1_TFBS_Trl
2R	19731432	2R_19731432_SNP [dm3] 2R_23843909_SNP [dm6]	G	A	9.847e^-5	0.795	SYNONYMOUS_CODING Snap29 UPSTREAM shu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	10820191	2R_10820191_SNP [dm3] 2R_14932686_SNP [dm6]	A	C	9.880e^-5	0.795	UPSTREAM CG12853 INTRON CG10253
2R	10820258	2R_10820258_SNP [dm3] 2R_14932753_SNP [dm6]	A	G	9.880e^-5	0.795	UPSTREAM CG12853 INTRON CG10253
2L	13231337	2L_13231337_SNP [dm3] 2L_13231337_SNP [dm6]	A	G	9.946e^-5	0.795	UPSTREAM Prosalpha6T DOWNSTREAM CG16815 INTERGENIC	TF binding site mE1_TFBS_cad
3R	10267064	3R_10267064_SNP [dm3] 3R_14441342_SNP [dm6]	G	T	1.007e^-4	0.795	INTRON cv-c
3L	17633388	3L_17633388_SNP [dm3] 3L_17640288_SNP [dm6]	A	G	1.008e^-4	0.795	INTRON Pep	TF binding site mE1_TFBS_cad
2R	16996570	2R_16996570_SNP [dm3] 2R_21109065_SNP [dm6]	T	G	1.028e^-4	0.795	INTRON ktub
3L	11545080	3L_11545080_SNP [dm3] 3L_11551980_SNP [dm6]	A	C	1.033e^-4	0.795	DOWNSTREAM mir-4968 INTRON Mob2	TF binding site BDTNP1_TFBS_dl
2L	5412912	2L_5412912_SNP [dm3] 2L_5412912_SNP [dm6]	A	C	1.035e^-4	0.795	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5412915	2L_5412915_SNP [dm3] 2L_5412915_SNP [dm6]	C	T	1.035e^-4	0.795	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14905982	X_14905982_SNP [dm3] X_15011949_SNP [dm6]	C	T	1.039e^-4	0.795	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10764772	2L_10764772_SNP [dm3] 2L_10764772_SNP [dm6]	G	A	1.045e^-4	0.795	SYNONYMOUS_CODING CG6495 DOWNSTREAM UbcD2	TF binding site mE1_TFBS_chinmo
2R	6002214	2R_6002214_SNP [dm3] 2R_10114709_SNP [dm6]	C	T	1.048e^-4	0.795	INTRON Pfk
3R	25547001	3R_25547001_SNP [dm3] 3R_29721279_SNP [dm6]	C	T	1.057e^-4	0.795	SYNONYMOUS_CODING CG15506
3L	13342181	3L_13342181_SNP [dm3] 3L_13349081_SNP [dm6]	A	T	1.066e^-4	0.795	UPSTREAM CG17687 INTERGENIC
X	11320928	X_11320928_MNP [dm3] X_11426895_MNP [dm6]	GCGG	TTTT	1.067e^-4	0.795	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320932	X_11320932_INS [dm3] X_11426899_INS [dm6]	A	AAT	1.067e^-4	0.795	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320993	X_11320993_SNP [dm3] X_11426960_SNP [dm6]	G	A	1.067e^-4	0.795	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11321111	X_11321111_SNP [dm3] X_11427078_SNP [dm6]	C	G	1.067e^-4	0.795	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26125295	3R_26125295_SNP [dm3] 3R_30299573_SNP [dm6]	C	T	1.071e^-4	0.795	INTRON hdc
X	11119294	X_11119294_SNP [dm3] X_11225261_SNP [dm6]	A	T	1.073e^-4	0.795	INTRON CG44422
X	11119301	X_11119301_SNP [dm3] X_11225268_SNP [dm6]	T	C	1.073e^-4	0.795	INTRON CG44422
X	11119321	X_11119321_SNP [dm3] X_11225288_SNP [dm6]	T	C	1.073e^-4	0.795	INTRON CG44422
2R	20723118	2R_20723118_SNP [dm3] 2R_24835595_SNP [dm6]	T	G	1.073e^-4	0.795	UTR_3_PRIME Dll DOWNSTREAM Dll
3L	12375088	3L_12375088_SNP [dm3] 3L_12381988_SNP [dm6]	C	T	1.077e^-4	0.795	INTRON Ncc69
3L	10730947	3L_10730947_SNP [dm3] 3L_10737847_SNP [dm6]	C	T	1.079e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	16998407	2R_16998407_SNP [dm3] 2R_21110902_SNP [dm6]	T	C	1.085e^-4	0.795	INTRON ktub
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	1.094e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	709492	3L_709492_SNP [dm3] 3L_709492_SNP [dm6]	T	C	1.101e^-4	0.795	SPLICE_SITE_REGION CkIIalpha-i3 SYNONYMOUS_CODING CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	5192306	3L_5192306_SNP [dm3] 3L_5199206_SNP [dm6]	G	A	1.109e^-4	0.795	INTRON shep
2L	4211001	2L_4211001_INS [dm3] 2L_4211001_INS [dm6]	T	TCTA	1.113e^-4	0.795	INTRON ft
X	11408411	X_11408411_SNP [dm3] X_11514378_SNP [dm6]	G	A	1.120e^-4	0.795	INTRON Drak
3R	22767927	3R_22767927_SNP [dm3] 3R_26942205_SNP [dm6]	T	C	1.121e^-4	0.795	SYNONYMOUS_CODING sda	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	11900139	X_11900139_SNP [dm3] X_12006106_SNP [dm6]	A	G	1.127e^-4	0.795	INTERGENIC
2R	16400394	2R_16400394_SNP [dm3] 2R_20512889_SNP [dm6]	A	G	1.130e^-4	0.795	SYNONYMOUS_CODING CG13426 DOWNSTREAM CR44649
3L	11854074	3L_11854074_SNP [dm3] 3L_11860974_SNP [dm6]	G	C	1.138e^-4	0.795	INTRON CG44837
3L	10784751	3L_10784751_SNP [dm3] 3L_10791651_SNP [dm6]	C	T	1.141e^-4	0.795	INTERGENIC
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	1.151e^-4	0.795	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	1.151e^-4	0.795	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	26246202	3R_26246202_SNP [dm3] 3R_30420480_SNP [dm6]	G	A	1.160e^-4	0.795	UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 DOWNSTREAM CG2217 INTRON CG42740 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	17239706	3L_17239706_SNP [dm3] 3L_17246606_SNP [dm6]	A	G	1.161e^-4	0.795	INTRON CR43870
3L	11648578	3L_11648578_SNP [dm3] 3L_11655478_SNP [dm6]	A	C	1.172e^-4	0.795	INTRON CG32085
3R	19043868	3R_19043868_SNP [dm3] 3R_23218146_SNP [dm6]	T	G	1.172e^-4	0.795	SYNONYMOUS_CODING cnc INTRON cnc	TF binding site mE1_TFBS_chinmo
2R	15877225	2R_15877225_SNP [dm3] 2R_19989720_SNP [dm6]	A	T	1.181e^-4	0.795	INTERGENIC
2R	10820260	2R_10820260_SNP [dm3] 2R_14932755_SNP [dm6]	A	G	1.186e^-4	0.795	UPSTREAM CG12853 INTRON CG10253
2L	3522838	2L_3522838_SNP [dm3] 2L_3522838_SNP [dm6]	G	T	1.191e^-4	0.795	NON_SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
2L	3523392	2L_3523392_SNP [dm3] 2L_3523392_SNP [dm6]	A	T	1.191e^-4	0.795	SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
3R	26363093	3R_26363093_SNP [dm3] 3R_30537371_SNP [dm6]	C	A	1.193e^-4	0.795	INTRON tmod
2L	5158849	2L_5158849_SNP [dm3] 2L_5158849_SNP [dm6]	G	A	1.197e^-4	0.795	NON_SYNONYMOUS_CODING Msp300 DOWNSTREAM Msp300 INTRON Msp300
2R	19729096	2R_19729096_SNP [dm3] 2R_23841573_SNP [dm6]	A	T	1.203e^-4	0.795	UTR_3_PRIME shu DOWNSTREAM CR44805
2L	10704084	2L_10704084_SNP [dm3] 2L_10704084_SNP [dm6]	A	G	1.204e^-4	0.795	NON_SYNONYMOUS_CODING CG6415 INTRON Lip2
2L	4400562	2L_4400562_DEL [dm3] 2L_4400562_DEL [dm6]	CCTGATCAATAAGATTGAGC...	C	1.206e^-4	0.795	UPSTREAM CG33003 DOWNSTREAM l_2_k05819 INTERGENIC
2L	15380882	2L_15380882_SNP [dm3] 2L_15380882_SNP [dm6]	C	T	1.220e^-4	0.795	INTERGENIC
X	4966354	X_4966354_SNP [dm3] X_5072321_SNP [dm6]	G	A	1.222e^-4	0.795	UTR_3_PRIME CG32767
3L	16330220	3L_16330220_SNP [dm3] 3L_16337120_SNP [dm6]	T	A	1.231e^-4	0.795	INTERGENIC
2R	13906994	2R_13906994_SNP [dm3] 2R_18019489_SNP [dm6]	T	C	1.235e^-4	0.795	SYNONYMOUS_CODING CG5084 UPSTREAM CG10910	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11923714	2R_11923714_SNP [dm3] 2R_16036209_SNP [dm6]	G	T	1.244e^-4	0.795	INTRON SP2353
3L	16357132	3L_16357132_SNP [dm3] 3L_16364032_SNP [dm6]	T	G	1.245e^-4	0.795	UPSTREAM Cpr72Eb DOWNSTREAM Cpr72Ea INTERGENIC
2R	19073621	2R_19073621_SNP [dm3] 2R_23186098_SNP [dm6]	G	C	1.245e^-4	0.795	DOWNSTREAM CG13539 INTRON CG34371
3L	1360120	3L_1360120_SNP [dm3] 3L_1360120_SNP [dm6]	C	G	1.258e^-4	0.795	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10181577	2L_10181577_SNP [dm3] 2L_10181577_SNP [dm6]	C	A	1.263e^-4	0.795	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv transposable element FlyBase
2L	10181718	2L_10181718_SNP [dm3] 2L_10181718_SNP [dm6]	C	T	1.263e^-4	0.795	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2L	10181723	2L_10181723_SNP [dm3] 2L_10181723_SNP [dm6]	A	G	1.263e^-4	0.795	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2L	10181732	2L_10181732_SNP [dm3] 2L_10181732_SNP [dm6]	T	A	1.263e^-4	0.795	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
3L	10268293	3L_10268293_SNP [dm3] 3L_10275193_SNP [dm6]	G	A	1.265e^-4	0.795	DOWNSTREAM Or67d INTERGENIC
3L	10268305	3L_10268305_SNP [dm3] 3L_10275205_SNP [dm6]	G	C	1.265e^-4	0.795	DOWNSTREAM Or67d INTERGENIC
2L	13981351	2L_13981351_SNP [dm3] 2L_13981351_SNP [dm6]	A	G	1.267e^-4	0.795	SYNONYMOUS_CODING NimC2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6051607	3R_6051607_SNP [dm3] 3R_10225885_SNP [dm6]	A	G	1.293e^-4	0.795	NON_SYNONYMOUS_CODING CG42795 UPSTREAM CG42795 DOWNSTREAM CG34107
3L	11596536	3L_11596536_SNP [dm3] 3L_11603436_SNP [dm6]	C	T	1.304e^-4	0.795	SYNONYMOUS_CODING CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10315356	3L_10315356_SNP [dm3] 3L_10322256_SNP [dm6]	T	G	1.305e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	12527759	2L_12527759_SNP [dm3] 2L_12527759_SNP [dm6]	A	G	1.311e^-4	0.795	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9663250	X_9663250_SNP [dm3] X_9769217_SNP [dm6]	T	C	1.314e^-4	0.795	INTERGENIC
X	9663251	X_9663251_SNP [dm3] X_9769218_SNP [dm6]	G	T	1.314e^-4	0.795	INTERGENIC
X	11408373	X_11408373_SNP [dm3] X_11514340_SNP [dm6]	C	G	1.314e^-4	0.795	INTRON Drak
3L	7161214	3L_7161214_SNP [dm3] 3L_7168114_SNP [dm6]	C	T	1.316e^-4	0.795	INTRON Dscam2
2R	16302031	2R_16302031_SNP [dm3] 2R_20414526_SNP [dm6]	A	C	1.336e^-4	0.795	INTERGENIC
3R	24894833	3R_24894833_SNP [dm3] 3R_29069111_SNP [dm6]	C	T	1.340e^-4	0.795	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	10365585	3R_10365585_SNP [dm3] 3R_14539863_SNP [dm6]	G	C	1.342e^-4	0.795	INTRON Pde6
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	1.342e^-4	0.795	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	7319419	X_7319419_DEL [dm3] X_7425386_DEL [dm6]	TG	T	1.344e^-4	0.795	UTR_3_PRIME CG32726 UPSTREAM CG15036
3L	13342242	3L_13342242_SNP [dm3] 3L_13349142_SNP [dm6]	C	T	1.348e^-4	0.795	UPSTREAM CG17687 INTERGENIC
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	1.348e^-4	0.795	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	1385378	3L_1385378_SNP [dm3] 3L_1385378_SNP [dm6]	C	T	1.352e^-4	0.795	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	19449722	2R_19449722_SNP [dm3] 2R_23562199_SNP [dm6]	T	A	1.355e^-4	0.795	SYNONYMOUS_CODING Pi3K59F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7857753	X_7857753_SNP [dm3] X_7963720_SNP [dm6]	A	G	1.356e^-4	0.795	SYNONYMOUS_CODING sws UPSTREAM sn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	1.359e^-4	0.795	INTRON dnc
2R	3204968	2R_3204968_INS [dm3] 2R_7317463_INS [dm6]	G	GG	1.373e^-4	0.795	DOWNSTREAM Dscam1 INTERGENIC
X	18694445	X_18694445_DEL [dm3] X_18800412_DEL [dm6]	TTTAGATGTTTGATCTAT...	T	1.375e^-4	0.795	INTRON Pk17E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	1.379e^-4	0.795	INTRON CG17839
2L	12527344	2L_12527344_SNP [dm3] 2L_12527344_SNP [dm6]	C	A	1.384e^-4	0.795	INTRON bun	TF binding site BDTNP1_TFBS_dl
3R	17877895	3R_17877895_SNP [dm3] 3R_22052173_SNP [dm6]	T	A	1.387e^-4	0.795	INTRON how	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	11184085	3L_11184085_SNP [dm3] 3L_11190985_SNP [dm6]	T	C	1.407e^-4	0.795	INTRON GlcAT-P
2R	19726701	2R_19726701_SNP [dm3] 2R_23839178_SNP [dm6]	C	T	1.409e^-4	0.795	UTR_3_PRIME CG5549 DOWNSTREAM snoRNA:Psi18S-176
3L	9815207	3L_9815207_SNP [dm3] 3L_9822107_SNP [dm6]	T	A	1.415e^-4	0.795	INTRON CG43897
3R	19043961	3R_19043961_SNP [dm3] 3R_23218239_SNP [dm6]	C	T	1.416e^-4	0.795	SYNONYMOUS_CODING cnc INTRON cnc	TF binding site mE1_TFBS_chinmo
3L	3096331	3L_3096331_SNP [dm3] 3L_3096331_SNP [dm6]	A	T	1.418e^-4	0.795	UPSTREAM tRNA:CR32287 & 1 other DOWNSTREAM tRNA:CR32288 & 2 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18295899	2R_18295899_SNP [dm3] 2R_22408394_SNP [dm6]	G	C	1.422e^-4	0.795	UTR_3_PRIME CG6044 UPSTREAM ventrally-expressed-protein-D DOWNSTREAM qkr58E-3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4904810	2R_4904810_SNP [dm3] 2R_9017305_SNP [dm6]	C	T	1.437e^-4	0.795	UPSTREAM CG13747 & 1 other INTERGENIC
2R	3350755	2R_3350755_SNP [dm3] 2R_7463250_SNP [dm6]	T	A	1.447e^-4	0.795	START_GAINED CG11141 UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	20026366	X_20026366_SNP [dm3] X_20132333_SNP [dm6]	G	C	1.472e^-4	0.795	UPSTREAM CG42582 INTERGENIC
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	1.478e^-4	0.795	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	14389452	3R_14389452_SNP [dm3] 3R_18563730_SNP [dm6]	T	A	1.486e^-4	0.795	DOWNSTREAM CG43210 & 1 other INTERGENIC
3L	19531135	3L_19531135_DEL [dm3] 3L_19538035_DEL [dm6]	AA	A	1.492e^-4	0.795	UTR_3_PRIME Cpr76Bd DOWNSTREAM CG9279
2L	2653929	2L_2653929_SNP [dm3] 2L_2653929_SNP [dm6]	T	C	1.493e^-4	0.795	UPSTREAM Or23a DOWNSTREAM Prosbeta4R1 INTERGENIC
2R	10820255	2R_10820255_SNP [dm3] 2R_14932750_SNP [dm6]	T	A	1.494e^-4	0.795	UPSTREAM CG12853 INTRON CG10253
X	11320940	X_11320940_SNP [dm3] X_11426907_SNP [dm6]	C	A	1.500e^-4	0.795	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13342187	3L_13342187_SNP [dm3] 3L_13349087_SNP [dm6]	C	T	1.502e^-4	0.795	UPSTREAM CG17687 INTERGENIC
X	11320962	X_11320962_DEL [dm3] X_11426929_DEL [dm6]	TAA	T	1.503e^-4	0.795	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320968	X_11320968_DEL [dm3] X_11426935_DEL [dm6]	AATCTAATTAA...	CG	1.503e^-4	0.795	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4049424	3L_4049424_SNP [dm3] 3L_4049424_SNP [dm6]	A	G	1.523e^-4	0.795	INTRON CG1136
2R	6225714	2R_6225714_DEL [dm3] 2R_10338209_DEL [dm6]	AT	C	1.524e^-4	0.795	INTRON CG42732
X	11320937	X_11320937_SNP [dm3] X_11426904_SNP [dm6]	G	C	1.526e^-4	0.795	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320942	X_11320942_SNP [dm3] X_11426909_SNP [dm6]	C	T	1.526e^-4	0.795	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320946	X_11320946_SNP [dm3] X_11426913_SNP [dm6]	T	G	1.526e^-4	0.795	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320947	X_11320947_SNP [dm3] X_11426914_SNP [dm6]	T	C	1.526e^-4	0.795	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	709494	3L_709494_SNP [dm3] 3L_709494_SNP [dm6]	G	T	1.529e^-4	0.795	NON_SYNONYMOUS_CODING CkIIalpha-i3 SPLICE_SITE_REGION CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
X	11303295	X_11303295_SNP [dm3] X_11409262_SNP [dm6]	C	T	1.540e^-4	0.795	UTR_3_PRIME dlg1 UPSTREAM CG15196 DOWNSTREAM dlg1
3R	14607643	3R_14607643_SNP [dm3] 3R_18781921_SNP [dm6]	C	T	1.546e^-4	0.795	INTRON CG7720
2R	14978893	2R_14978893_SNP [dm3] 2R_19091388_SNP [dm6]	C	T	1.562e^-4	0.795	SYNONYMOUS_CODING 5-HT1A
3L	11648057	3L_11648057_SNP [dm3] 3L_11654957_SNP [dm6]	T	C	1.563e^-4	0.795	INTRON CG32085
X	5750616	X_5750616_SNP [dm3] X_5856583_SNP [dm6]	C	T	1.571e^-4	0.795	INTERGENIC
X	5750618	X_5750618_SNP [dm3] X_5856585_SNP [dm6]	A	C	1.571e^-4	0.795	INTERGENIC
X	11320860	X_11320860_SNP [dm3] X_11426827_SNP [dm6]	A	T	1.574e^-4	0.795	INTRON Gs2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21441821	3R_21441821_SNP [dm3] 3R_25616099_SNP [dm6]	C	A	1.582e^-4	0.795	INTRON Npl4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	20558843	X_20558843_SNP [dm3] X_20687816_SNP [dm6]	C	A	1.593e^-4	0.795	DOWNSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	13979052	3R_13979052_SNP [dm3] 3R_18153330_SNP [dm6]	T	C	1.598e^-4	0.795	SYNONYMOUS_CODING CG14316
2L	7374398	2L_7374398_SNP [dm3] 2L_7374398_SNP [dm6]	T	C	1.615e^-4	0.795	INTRON Wnt10	TF binding site mE1_TFBS_cad
3L	11043943	3L_11043943_SNP [dm3] 3L_11050843_SNP [dm6]	A	C	1.617e^-4	0.795	UPSTREAM CG43693 INTRON CG43693 EXON CR45119
3L	11043959	3L_11043959_SNP [dm3] 3L_11050859_SNP [dm6]	G	C	1.617e^-4	0.795	UPSTREAM CG43693 INTRON CG43693 EXON CR45119
3L	10607856	3L_10607856_SNP [dm3] 3L_10614756_SNP [dm6]	T	A	1.619e^-4	0.795	INTERGENIC
3L	10607874	3L_10607874_SNP [dm3] 3L_10614774_SNP [dm6]	C	A	1.619e^-4	0.795	INTERGENIC
X	21848777	X_21848777_SNP [dm3] X_22446941_SNP [dm6]	T	C	1.620e^-4	0.795	SYNONYMOUS_CODING CG14621 DOWNSTREAM CG14615
3L	5192292	3L_5192292_SNP [dm3] 3L_5199192_SNP [dm6]	T	C	1.626e^-4	0.795	INTRON shep
2R	16831281	2R_16831281_SNP [dm3] 2R_20943776_SNP [dm6]	C	T	1.629e^-4	0.795	UPSTREAM Act57B INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	12968846	3R_12968846_SNP [dm3] 3R_17143124_SNP [dm6]	A	T	1.641e^-4	0.795	UPSTREAM TwdlW INTERGENIC
2R	10820244	2R_10820244_SNP [dm3] 2R_14932739_SNP [dm6]	A	C	1.644e^-4	0.795	UPSTREAM CG12853 INTRON CG10253
2L	17247765	2L_17247765_SNP [dm3] 2L_17247765_SNP [dm6]	T	G	1.658e^-4	0.795	DOWNSTREAM CR44395 INTRON beat-IIIc
3L	13339531	3L_13339531_SNP [dm3] 3L_13346431_SNP [dm6]	G	T	1.659e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14947132	X_14947132_SNP [dm3] X_15053099_SNP [dm6]	C	A	1.677e^-4	0.795	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13735521	2L_13735521_SNP [dm3] 2L_13735521_SNP [dm6]	C	G	1.716e^-4	0.795	UPSTREAM CG31813 INTERGENIC
3R	26256786	3R_26256786_SNP [dm3] 3R_30431064_SNP [dm6]	A	G	1.718e^-4	0.795	UPSTREAM CG15534 INTRON CG15533	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad
2R	19728235	2R_19728235_SNP [dm3] 2R_23840712_SNP [dm6]	G	A	1.724e^-4	0.795	UPSTREAM snoRNA:Psi18S-176 DOWNSTREAM CG5549 & 1 other EXON CR44805	TF binding site mE1_TFBS_HSA
2R	19730181	2R_19730181_SNP [dm3] 2R_23842658_SNP [dm6]	T	A	1.724e^-4	0.795	SYNONYMOUS_CODING shu DOWNSTREAM Snap29	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10315322	3L_10315322_SNP [dm3] 3L_10322222_SNP [dm6]	A	G	1.736e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	5513325	2L_5513325_SNP [dm3] 2L_5513325_SNP [dm6]	A	C	1.750e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	13545568	X_13545568_SNP [dm3] X_13651535_SNP [dm6]	T	C	1.762e^-4	0.795	INTRON NFAT
3L	14828782	3L_14828782_SNP [dm3] 3L_14835682_SNP [dm6]	A	C	1.772e^-4	0.795	INTRON CG17839
2R	19025083	2R_19025083_DEL [dm3] 2R_23137560_DEL [dm6]	TTTTATCT	T	1.773e^-4	0.795	INTERGENIC
3L	18124962	3L_18124962_SNP [dm3] 3L_18131862_SNP [dm6]	G	A	1.786e^-4	0.795	SYNONYMOUS_CODING Cyp312a1
3R	14389440	3R_14389440_SNP [dm3] 3R_18563718_SNP [dm6]	G	A	1.795e^-4	0.795	DOWNSTREAM CG43210 & 1 other INTERGENIC
3L	7890887	3L_7890887_SNP [dm3] 3L_7897787_SNP [dm6]	A	G	1.803e^-4	0.795	SYNONYMOUS_CODING pbl
2R	19833846	2R_19833846_SNP [dm3] 2R_23946323_SNP [dm6]	A	T	1.803e^-4	0.795	DOWNSTREAM CG13565 INTRON Galphas
2L	9489983	2L_9489983_SNP [dm3] 2L_9489983_SNP [dm6]	T	C	1.804e^-4	0.795	INTERGENIC
2L	17235530	2L_17235530_SNP [dm3] 2L_17235530_SNP [dm6]	T	C	1.812e^-4	0.795	INTRON beat-IIIc
2L	10048417	2L_10048417_SNP [dm3] 2L_10048417_SNP [dm6]	C	A	1.812e^-4	0.795	INTERGENIC
2L	16125414	2L_16125414_SNP [dm3] 2L_16125414_SNP [dm6]	G	C	1.818e^-4	0.795	INTERGENIC
X	12364002	X_12364002_SNP [dm3] X_12469969_SNP [dm6]	A	C	1.819e^-4	0.795	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4236258	X_4236258_SNP [dm3] X_4342225_SNP [dm6]	C	T	1.820e^-4	0.795	INTRON norpA
2L	3766163	2L_3766163_SNP [dm3] 2L_3766163_SNP [dm6]	C	T	1.820e^-4	0.795	UPSTREAM CG43707 DOWNSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	19493011	2R_19493011_SNP [dm3] 2R_23605488_SNP [dm6]	C	A	1.825e^-4	0.795	UPSTREAM CG17664 DOWNSTREAM CG17662 INTRON CG17664
X	20026044	X_20026044_SNP [dm3] X_20132011_SNP [dm6]	A	T	1.826e^-4	0.795	UPSTREAM CG42582 INTERGENIC
X	16871762	X_16871762_SNP [dm3] X_16977729_SNP [dm6]	T	A	1.827e^-4	0.795	INTRON CG45002
2L	5514630	2L_5514630_SNP [dm3] 2L_5514630_SNP [dm6]	C	G	1.831e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4576142	2L_4576142_SNP [dm3] 2L_4576142_SNP [dm6]	G	C	1.837e^-4	0.795	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11408422	X_11408422_SNP [dm3] X_11514389_SNP [dm6]	T	A	1.841e^-4	0.795	INTRON Drak
3R	10247733	3R_10247733_SNP [dm3] 3R_14422011_SNP [dm6]	C	T	1.844e^-4	0.795	SPLICE_SITE_REGION CR44176 DOWNSTREAM natalisin INTRON cv-c EXON CR44176
3L	15266421	3L_15266421_SNP [dm3] 3L_15273321_SNP [dm6]	C	A	1.845e^-4	0.795	INTERGENIC
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	1.848e^-4	0.795	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	1.848e^-4	0.795	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	7494266	X_7494266_SNP [dm3] X_7600233_SNP [dm6]	C	T	1.857e^-4	0.795	INTERGENIC	regulatory region REDfly_CRMs
2R	19024678	2R_19024678_SNP [dm3] 2R_23137155_SNP [dm6]	A	T	1.863e^-4	0.795	INTERGENIC
3L	15606722	3L_15606722_SNP [dm3] 3L_15613622_SNP [dm6]	T	C	1.863e^-4	0.795	SYNONYMOUS_CODING comm3 UPSTREAM CG13449
3R	14888483	3R_14888483_DEL [dm3] 3R_19062761_DEL [dm6]	TTGCAATATCATATCTT...	T	1.868e^-4	0.795	INTRON cdi
3R	3765618	3R_3765618_SNP [dm3] 3R_7939896_SNP [dm6]	T	A	1.869e^-4	0.795	INTRON dsx
3R	3765638	3R_3765638_SNP [dm3] 3R_7939916_SNP [dm6]	A	G	1.869e^-4	0.795	INTRON dsx
3R	25603243	3R_25603243_DEL [dm3] 3R_29777521_DEL [dm6]	ATAGAT	A	1.873e^-4	0.795	INTRON kay	TF binding site BDTNP1_TFBS_z
2L	7380401	2L_7380401_SNP [dm3] 2L_7380401_SNP [dm6]	G	A	1.877e^-4	0.795	SYNONYMOUS_CODING ninaC
3R	14389436	3R_14389436_SNP [dm3] 3R_18563714_SNP [dm6]	A	C	1.878e^-4	0.795	DOWNSTREAM CG43210 & 1 other INTERGENIC
X	11321022	X_11321022_SNP [dm3] X_11426989_SNP [dm6]	A	T	1.880e^-4	0.795	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11321058	X_11321058_SNP [dm3] X_11427025_SNP [dm6]	T	G	1.880e^-4	0.795	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5808609	2L_5808609_SNP [dm3] 2L_5808609_SNP [dm6]	T	C	1.891e^-4	0.795	SYNONYMOUS_CODING CG11034 UTR_3_PRIME CG11034	TF binding site mE1_TFBS_cad
3R	9166630	3R_9166630_SNP [dm3] 3R_13340908_SNP [dm6]	T	C	1.910e^-4	0.795	INTRON PK2-R1
3L	8485661	3L_8485661_DEL [dm3] 3L_8492561_DEL [dm6]	GG	G	1.915e^-4	0.795	INTRON CG43163
3L	16050178	3L_16050178_SNP [dm3] 3L_16057078_SNP [dm6]	T	A	1.926e^-4	0.795	INTRON Mbs	TF binding site BDTNP1_TFBS_dl
2L	881603	2L_881603_SNP [dm3] 2L_881603_SNP [dm6]	A	G	1.929e^-4	0.795	INTRON CG15824	TF binding site mE1_TFBS_cad
2R	16161747	2R_16161747_SNP [dm3] 2R_20274242_SNP [dm6]	G	T	1.934e^-4	0.795	UTR_5_PRIME CG10444 UPSTREAM CG11788	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12527355	2L_12527355_SNP [dm3] 2L_12527355_SNP [dm6]	A	G	1.937e^-4	0.795	INTRON bun	TF binding site BDTNP1_TFBS_dl
2L	13743364	2L_13743364_SNP [dm3] 2L_13743364_SNP [dm6]	T	G	1.960e^-4	0.795	INTERGENIC
2L	11842681	2L_11842681_SNP [dm3] 2L_11842681_SNP [dm6]	T	C	1.961e^-4	0.795	UPSTREAM CG14933 & 2 others INTRON Pde1c
3L	9842668	3L_9842668_SNP [dm3] 3L_9849568_SNP [dm6]	C	T	1.965e^-4	0.795	INTRON RasGAP1
3L	10039318	3L_10039318_DEL [dm3] 3L_10046218_DEL [dm6]	GGAG	G	1.971e^-4	0.795	INTRON dpr6
3R	5096095	3R_5096095_SNP [dm3] 3R_9270373_SNP [dm6]	T	C	1.974e^-4	0.795	DOWNSTREAM Vps16A INTERGENIC
2L	2831841	2L_2831841_SNP [dm3] 2L_2831841_SNP [dm6]	G	A	1.974e^-4	0.795	INTERGENIC
2L	10181695	2L_10181695_SNP [dm3] 2L_10181695_SNP [dm6]	C	A	1.988e^-4	0.795	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2L	10181696	2L_10181696_SNP [dm3] 2L_10181696_SNP [dm6]	A	C	1.988e^-4	0.795	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
3R	26256760	3R_26256760_SNP [dm3] 3R_30431038_SNP [dm6]	T	A	1.998e^-4	0.795	INTRON CG15533	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad
3L	12707369	3L_12707369_SNP [dm3] 3L_12714269_SNP [dm6]	A	T	2.005e^-4	0.795	INTERGENIC
3R	6048867	3R_6048867_SNP [dm3] 3R_10223145_SNP [dm6]	T	A	2.015e^-4	0.795	SYNONYMOUS_CODING CG12420 DOWNSTREAM CG12817 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14944691	X_14944691_SNP [dm3] X_15050658_SNP [dm6]	C	G	2.018e^-4	0.795	NON_SYNONYMOUS_CODING CG5541 INTRON hiw	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4721797	3L_4721797_SNP [dm3] 3L_4721797_SNP [dm6]	T	C	2.027e^-4	0.795	INTRON RhoGEF64C
3R	11128005	3R_11128005_DEL [dm3] 3R_15302283_DEL [dm6]	TAATTCACTGAGATATTTAT...	T	2.035e^-4	0.795	INTRON Tm1	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
X	5450954	X_5450954_SNP [dm3] X_5556921_SNP [dm6]	C	G	2.039e^-4	0.795	INTRON Vsx2
3L	11596227	3L_11596227_SNP [dm3] 3L_11603127_SNP [dm6]	T	A	2.045e^-4	0.795	SYNONYMOUS_CODING CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	9814003	3R_9814003_SNP [dm3] 3R_13988281_SNP [dm6]	G	A	2.046e^-4	0.795	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11672828	3L_11672828_SNP [dm3] 3L_11679728_SNP [dm6]	A	G	2.050e^-4	0.795	INTRON CG32085
2R	6568874	2R_6568874_SNP [dm3] 2R_10681369_SNP [dm6]	T	A	2.056e^-4	0.795	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12382348	3L_12382348_SNP [dm3] 3L_12389248_SNP [dm6]	A	T	2.064e^-4	0.795	INTRON Ncc69
2L	10181798	2L_10181798_SNP [dm3] 2L_10181798_SNP [dm6]	A	G	2.065e^-4	0.795	DOWNSTREAM Sur INTERGENIC
3R	10122990	3R_10122990_SNP [dm3] 3R_14297268_SNP [dm6]	C	A	2.070e^-4	0.795	UPSTREAM CG12207 INTRON CG12207
3R	25298904	3R_25298904_SNP [dm3] 3R_29473182_SNP [dm6]	G	A	2.070e^-4	0.795	SYNONYMOUS_CODING Ptp99A
3R	19008361	3R_19008361_SNP [dm3] 3R_23182639_SNP [dm6]	A	G	2.073e^-4	0.795	UPSTREAM Irk1 INTRON Irk1
3L	4405562	3L_4405562_SNP [dm3] 3L_4405562_SNP [dm6]	C	T	2.079e^-4	0.795	SYNONYMOUS_CODING CG15019 DOWNSTREAM Syx17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7383453	2L_7383453_SNP [dm3] 2L_7383453_SNP [dm6]	C	G	2.081e^-4	0.795	DOWNSTREAM ninaC INTRON ninaC	TF binding site mE1_TFBS_cad
2L	7383464	2L_7383464_SNP [dm3] 2L_7383464_SNP [dm6]	A	C	2.081e^-4	0.795	DOWNSTREAM ninaC INTRON ninaC	TF binding site mE1_TFBS_cad
X	9109410	X_9109410_SNP [dm3] X_9215377_SNP [dm6]	G	A	2.083e^-4	0.795	SYNONYMOUS_CODING Obp8a UPSTREAM CG15368
3R	24219136	3R_24219136_SNP [dm3] 3R_28393414_SNP [dm6]	A	T	2.090e^-4	0.795	INTERGENIC
X	4293464	X_4293464_SNP [dm3] X_4399431_SNP [dm6]	C	G	2.095e^-4	0.795	INTRON CR32773
3R	25603205	3R_25603205_SNP [dm3] 3R_29777483_SNP [dm6]	A	G	2.096e^-4	0.795	INTRON kay	TF binding site BDTNP1_TFBS_z
3L	4411368	3L_4411368_SNP [dm3] 3L_4411368_SNP [dm6]	A	T	2.098e^-4	0.795	INTRON DOR
2L	7091248	2L_7091248_SNP [dm3] 2L_7091248_SNP [dm6]	A	T	2.099e^-4	0.795	INTERGENIC
2L	3523371	2L_3523371_SNP [dm3] 2L_3523371_SNP [dm6]	T	C	2.102e^-4	0.795	SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
3L	15836111	3L_15836111_SNP [dm3] 3L_15843011_SNP [dm6]	A	T	2.106e^-4	0.795	DOWNSTREAM mir-263b INTRON CG32150
3R	19038218	3R_19038218_SNP [dm3] 3R_23212496_SNP [dm6]	A	C	2.109e^-4	0.795	INTRON cnc	TF binding site BDTNP1_TFBS_dl
3L	16050413	3L_16050413_SNP [dm3] 3L_16057313_SNP [dm6]	C	T	2.109e^-4	0.795	INTRON Mbs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10152879	2L_10152879_SNP [dm3] 2L_10152879_SNP [dm6]	A	G	2.113e^-4	0.795	INTRON CG44153 & 1 other
X	803593	X_803593_SNP [dm3] X_909560_SNP [dm6]	C	G	2.117e^-4	0.795	UPSTREAM CG43867 INTRON CG43867	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	803658	X_803658_SNP [dm3] X_909625_SNP [dm6]	T	A	2.117e^-4	0.795	UPSTREAM CG43867 INTRON CG43867	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	13411499	2L_13411499_SNP [dm3] 2L_13411499_SNP [dm6]	C	G	2.118e^-4	0.795	SYNONYMOUS_CODING Vm34Ca DOWNSTREAM CG7110
3L	16050182	3L_16050182_INS [dm3] 3L_16057082_INS [dm6]	T	TT	2.127e^-4	0.795	INTRON Mbs	TF binding site BDTNP1_TFBS_dl
3R	25883810	3R_25883810_SNP [dm3] 3R_30058088_SNP [dm6]	C	T	2.136e^-4	0.795	UTR_3_PRIME CG34317 & 1 other UPSTREAM sima	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	11650219	3L_11650219_SNP [dm3] 3L_11657119_SNP [dm6]	A	G	2.139e^-4	0.795	DOWNSTREAM mir-274 INTRON CG32085
3L	416270	3L_416270_SNP [dm3] 3L_416270_SNP [dm6]	G	T	2.148e^-4	0.795	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14672545	3L_14672545_SNP [dm3] 3L_14679445_SNP [dm6]	T	G	2.154e^-4	0.795	INTRON ome
3R	1863635	3R_1863635_SNP [dm3] 3R_6037913_SNP [dm6]	C	G	2.161e^-4	0.795	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10820121	2R_10820121_SNP [dm3] 2R_14932616_SNP [dm6]	A	G	2.167e^-4	0.795	UPSTREAM CG12853 INTRON CG10253
X	6503382	X_6503382_SNP [dm3] X_6609349_SNP [dm6]	T	A	2.168e^-4	0.795	INTRON pigs
2L	3211134	2L_3211134_SNP [dm3] 2L_3211134_SNP [dm6]	C	T	2.170e^-4	0.795	EXON CR45336
X	588325	X_588325_SNP [dm3] X_694292_SNP [dm6]	T	C	2.172e^-4	0.795	INTRON sdk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
3L	16931385	3L_16931385_SNP [dm3] 3L_16938285_SNP [dm6]	C	T	2.175e^-4	0.795	DOWNSTREAM CG13022 & 1 other INTERGENIC
2R	17695926	2R_17695926_SNP [dm3] 2R_21808421_SNP [dm6]	G	T	2.177e^-4	0.795	INTERGENIC
2L	13671767	2L_13671767_SNP [dm3] 2L_13671767_SNP [dm6]	C	T	2.178e^-4	0.795	DOWNSTREAM CG18507 INTRON CG18507
2L	22944948	2L_22944948_DEL [dm3] 2L_23052216_DEL [dm6]	GC	G	2.178e^-4	0.795	INTERGENIC
3L	9850037	3L_9850037_SNP [dm3] 3L_9856937_SNP [dm6]	C	T	2.184e^-4	0.795	DOWNSTREAM CG10809 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	9850057	3L_9850057_SNP [dm3] 3L_9856957_SNP [dm6]	T	C	2.184e^-4	0.795	DOWNSTREAM CG10809 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	7158796	2R_7158796_SNP [dm3] 2R_11271291_SNP [dm6]	A	G	2.186e^-4	0.795	INTRON Cpr47Ef
3L	13591135	3L_13591135_INS [dm3] 3L_13598035_INS [dm6]	G	GC	2.191e^-4	0.795	INTRON bru-3
3L	709440	3L_709440_SNP [dm3] 3L_709440_SNP [dm6]	G	C	2.204e^-4	0.795	NON_SYNONYMOUS_CODING CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	709450	3L_709450_SNP [dm3] 3L_709450_SNP [dm6]	G	A	2.204e^-4	0.795	SYNONYMOUS_CODING CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3R	21422706	3R_21422706_SNP [dm3] 3R_25596984_SNP [dm6]	C	T	2.209e^-4	0.795	INTRON ymp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2789198	2L_2789198_SNP [dm3] 2L_2789198_SNP [dm6]	C	T	2.222e^-4	0.795	INTRON Syt1
3R	25468097	3R_25468097_SNP [dm3] 3R_29642375_SNP [dm6]	G	T	2.225e^-4	0.795	INTRON Dop1R2	TF binding site mE1_TFBS_cad
3R	25468099	3R_25468099_SNP [dm3] 3R_29642377_SNP [dm6]	G	A	2.225e^-4	0.795	INTRON Dop1R2	TF binding site mE1_TFBS_cad
2L	10181684	2L_10181684_SNP [dm3] 2L_10181684_SNP [dm6]	A	C	2.238e^-4	0.795	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
3R	19038208	3R_19038208_SNP [dm3] 3R_23212486_SNP [dm6]	C	T	2.239e^-4	0.795	INTRON cnc	TF binding site BDTNP1_TFBS_dl
2L	2998354	2L_2998354_SNP [dm3] 2L_2998354_SNP [dm6]	T	A	2.241e^-4	0.795	UTR_3_PRIME CG3558 UPSTREAM CG17265
2R	10447899	2R_10447899_SNP [dm3] 2R_14560394_SNP [dm6]	C	T	2.246e^-4	0.795	INTRON ttv
3L	11596231	3L_11596231_SNP [dm3] 3L_11603131_SNP [dm6]	A	G	2.248e^-4	0.795	NON_SYNONYMOUS_CODING CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	13591132	3L_13591132_SNP [dm3] 3L_13598032_SNP [dm6]	T	C	2.248e^-4	0.795	INTRON bru-3
3L	3103668	3L_3103668_SNP [dm3] 3L_3103668_SNP [dm6]	C	G	2.250e^-4	0.795	INTRON Cht7
3L	5712721	3L_5712721_SNP [dm3] 3L_5719621_SNP [dm6]	A	G	2.257e^-4	0.795	UPSTREAM snoRNA:Me18S-A1494 INTRON sif
2L	881620	2L_881620_SNP [dm3] 2L_881620_SNP [dm6]	A	G	2.260e^-4	0.795	INTRON CG15824	TF binding site mE1_TFBS_cad
2L	881627	2L_881627_SNP [dm3] 2L_881627_SNP [dm6]	T	A	2.260e^-4	0.795	INTRON CG15824	TF binding site mE1_TFBS_cad
3L	5268729	3L_5268729_DEL [dm3] 3L_5275629_DEL [dm6]	GG	G	2.272e^-4	0.795	INTRON shep	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13784072	2R_13784072_SNP [dm3] 2R_17896567_SNP [dm6]	A	C	2.273e^-4	0.795	DOWNSTREAM CG14491 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16715633	2L_16715633_SNP [dm3] 2L_16715633_SNP [dm6]	C	G	2.275e^-4	0.795	UPSTREAM Cyt-c-d INTRON CG31808	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	16715655	2L_16715655_SNP [dm3] 2L_16715655_SNP [dm6]	G	A	2.275e^-4	0.795	UPSTREAM Cyt-c-d INTRON CG31808	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	15501852	X_15501852_SNP [dm3] X_15607819_SNP [dm6]	T	A	2.280e^-4	0.795	INTRON sog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15501860	X_15501860_SNP [dm3] X_15607827_SNP [dm6]	G	A	2.280e^-4	0.795	INTRON sog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20469643	2R_20469643_SNP [dm3] 2R_24582120_SNP [dm6]	T	A	2.285e^-4	0.795	INTRON pio	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2L	7080864	2L_7080864_SNP [dm3] 2L_7080864_SNP [dm6]	T	C	2.286e^-4	0.795	INTRON Pvf2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10996917	3L_10996917_SNP [dm3] 3L_11003817_SNP [dm6]	C	G	2.290e^-4	0.795	INTRON klu
2R	7031461	2R_7031461_SNP [dm3] 2R_11143956_SNP [dm6]	G	A	2.291e^-4	0.795	UPSTREAM CG13229 INTRON CG13229
2R	14184864	2R_14184864_SNP [dm3] 2R_18297359_SNP [dm6]	T	C	2.292e^-4	0.795	SPLICE_SITE_REGION CG18538 UPSTREAM CG18539 DOWNSTREAM CG18537 INTRON sbb & 1 other
3L	4304113	3L_4304113_SNP [dm3] 3L_4304113_SNP [dm6]	G	A	2.295e^-4	0.795	INTRON dyl
3R	26476642	3R_26476642_SNP [dm3] 3R_30650920_SNP [dm6]	C	T	2.298e^-4	0.795	DOWNSTREAM CG34433 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18930447	2L_18930447_SNP [dm3] 2L_18930447_SNP [dm6]	G	A	2.301e^-4	0.795	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18604212	2R_18604212_SNP [dm3] 2R_22716707_SNP [dm6]	A	G	2.303e^-4	0.795	SYNONYMOUS_CODING CG30268 DOWNSTREAM jbug
2R	17676065	2R_17676065_SNP [dm3] 2R_21788560_SNP [dm6]	G	A	2.306e^-4	0.795	INTERGENIC
3L	14578107	3L_14578107_SNP [dm3] 3L_14585007_SNP [dm6]	A	C	2.311e^-4	0.795	INTRON HGTX	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12527342	2L_12527342_SNP [dm3] 2L_12527342_SNP [dm6]	A	T	2.317e^-4	0.795	INTRON bun	TF binding site BDTNP1_TFBS_dl
2L	490987	2L_490987_SNP [dm3] 2L_490987_SNP [dm6]	G	T	2.318e^-4	0.795	UTR_5_PRIME ush INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	490995	2L_490995_SNP [dm3] 2L_490995_SNP [dm6]	A	T	2.318e^-4	0.795	START_GAINED ush UTR_5_PRIME ush INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	3765605	3R_3765605_SNP [dm3] 3R_7939883_SNP [dm6]	T	A	2.320e^-4	0.795	INTRON dsx
3R	12793620	3R_12793620_SNP [dm3] 3R_16967898_SNP [dm6]	A	C	2.326e^-4	0.795	INTRON Abd-B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2498344	3R_2498344_SNP [dm3] 3R_6672622_SNP [dm6]	C	T	2.327e^-4	0.795	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	8766859	2L_8766859_SNP [dm3] 2L_8766859_SNP [dm6]	G	T	2.335e^-4	0.795	NON_SYNONYMOUS_CODING CG9463
2R	18295857	2R_18295857_SNP [dm3] 2R_22408352_SNP [dm6]	A	T	2.336e^-4	0.795	UTR_3_PRIME CG6044 UPSTREAM ventrally-expressed-protein-D DOWNSTREAM qkr58E-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11062625	3L_11062625_SNP [dm3] 3L_11069525_SNP [dm6]	G	A	2.343e^-4	0.795	SYNONYMOUS_CODING CG6310 DOWNSTREAM SuUR & 1 other
3R	26476477	3R_26476477_SNP [dm3] 3R_30650755_SNP [dm6]	G	T	2.347e^-4	0.795	UTR_3_PRIME CG34433 DOWNSTREAM CG34432	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19527247	2L_19527247_SNP [dm3] 2L_19527247_SNP [dm6]	C	G	2.365e^-4	0.795	UTR_3_PRIME CG10165 UPSTREAM CG10166 DOWNSTREAM CG10165 INTRON CG10137
2L	19527301	2L_19527301_SNP [dm3] 2L_19527301_SNP [dm6]	C	A	2.365e^-4	0.795	UTR_3_PRIME CG10165 UPSTREAM CG10166 INTRON CG10137
2L	19527710	2L_19527710_SNP [dm3] 2L_19527710_SNP [dm6]	A	G	2.365e^-4	0.795	INTRON CG10137 & 1 other
2L	19528054	2L_19528054_SNP [dm3] 2L_19528054_SNP [dm6]	T	C	2.365e^-4	0.795	INTRON CG10137 & 1 other
3L	10726729	3L_10726729_SNP [dm3] 3L_10733629_SNP [dm6]	A	G	2.376e^-4	0.795	INTERGENIC
3L	10726744	3L_10726744_SNP [dm3] 3L_10733644_SNP [dm6]	G	A	2.376e^-4	0.795	INTERGENIC
X	12273532	X_12273532_SNP [dm3] X_12379499_SNP [dm6]	A	C	2.379e^-4	0.795	INTERGENIC
3R	11235440	3R_11235440_SNP [dm3] 3R_15409718_SNP [dm6]	G	T	2.387e^-4	0.795	INTRON Atx2
3R	25603939	3R_25603939_SNP [dm3] 3R_29778217_SNP [dm6]	A	G	2.387e^-4	0.795	INTRON kay	TF binding site BDTNP1_TFBS_z
X	16299383	X_16299383_DEL [dm3] X_16405350_DEL [dm6]	ACA	A	2.401e^-4	0.795	UPSTREAM CG4301 & 1 other INTERGENIC
3R	19033454	3R_19033454_SNP [dm3] 3R_23207732_SNP [dm6]	A	G	2.403e^-4	0.795	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	3080310	2R_3080310_SNP [dm3] 2R_7192805_SNP [dm6]	A	G	2.407e^-4	0.795	UTR_5_PRIME pk INTRON pk	TF binding site BDTNP1_TFBS_prd
2L	5649943	2L_5649943_SNP [dm3] 2L_5649943_SNP [dm6]	T	A	2.435e^-4	0.795	INTRON CG31646
2L	12513904	2L_12513904_SNP [dm3] 2L_12513904_SNP [dm6]	T	C	2.436e^-4	0.795	INTRON bun
2L	8669539	2L_8669539_INS [dm3] 2L_8669539_INS [dm6]	T	TT	2.439e^-4	0.795	UTR_3_PRIME Sema-1a
X	21081580	X_21081580_SNP [dm3] X_21210553_SNP [dm6]	A	G	2.464e^-4	0.795	INTRON CG32521
3R	25283936	3R_25283936_DEL [dm3] 3R_29458214_DEL [dm6]	GAA	G	2.493e^-4	0.795	DOWNSTREAM CR44022 INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17205564	2R_17205564_INS [dm3] 2R_21318059_INS [dm6]	G	ATAATAAT	2.496e^-4	0.795	UTR_3_PRIME CG33655 INTRON CG9485
2R	10820254	2R_10820254_SNP [dm3] 2R_14932749_SNP [dm6]	C	A	2.497e^-4	0.795	UPSTREAM CG12853 INTRON CG10253
2R	10820284	2R_10820284_SNP [dm3] 2R_14932779_SNP [dm6]	A	C	2.497e^-4	0.795	UPSTREAM CG12853 INTRON CG10253
2L	10181779	2L_10181779_INS [dm3] 2L_10181779_INS [dm6]	T	TTTCAGTGAATGT...	2.508e^-4	0.795	DOWNSTREAM Sur INTERGENIC
2R	10820100	2R_10820100_SNP [dm3] 2R_14932595_SNP [dm6]	G	T	2.519e^-4	0.795	UPSTREAM CG12853 INTRON CG10253
2R	10820102	2R_10820102_SNP [dm3] 2R_14932597_SNP [dm6]	A	C	2.519e^-4	0.795	UPSTREAM CG12853 INTRON CG10253
2R	19737551	2R_19737551_SNP [dm3] 2R_23850028_SNP [dm6]	G	T	2.524e^-4	0.795	SYNONYMOUS_CODING eIF6 INTRON ytr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	19738553	2R_19738553_SNP [dm3] 2R_23851030_SNP [dm6]	A	G	2.524e^-4	0.795	UTR_5_PRIME ytr UPSTREAM eIF6 & 1 other INTRON ytr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	19739076	2R_19739076_SNP [dm3] 2R_23851553_SNP [dm6]	G	A	2.524e^-4	0.795	UPSTREAM gbb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	2650248	3R_2650248_SNP [dm3] 3R_6824526_SNP [dm6]	G	A	2.525e^-4	0.795	UTR_3_PRIME Scr	regulatory region REDfly_CRMs
2L	5513310	2L_5513310_INS [dm3] 2L_5513310_INS [dm6]	A	ACA	2.528e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	26249046	3R_26249046_SNP [dm3] 3R_30423324_SNP [dm6]	A	G	2.530e^-4	0.795	UTR_3_PRIME CG15535 UPSTREAM CG2217 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23333243	3R_23333243_SNP [dm3] 3R_27507521_SNP [dm6]	A	T	2.541e^-4	0.795	INTERGENIC
3L	1279322	3L_1279322_SNP [dm3] 3L_1279322_SNP [dm6]	G	A	2.542e^-4	0.795	INTRON CG32333
2L	746873	2L_746873_SNP [dm3] 2L_746873_SNP [dm6]	G	C	2.547e^-4	0.795	INTERGENIC
2R	19404439	2R_19404439_SNP [dm3] 2R_23516916_SNP [dm6]	G	A	2.549e^-4	0.795	INTERGENIC
3L	10861132	3L_10861132_SNP [dm3] 3L_10868032_SNP [dm6]	G	A	2.549e^-4	0.795	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12411303	3L_12411303_SNP [dm3] 3L_12418203_SNP [dm6]	A	T	2.550e^-4	0.795	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	2.560e^-4	0.795	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	19745686	2R_19745686_SNP [dm3] 2R_23858163_SNP [dm6]	G	C	2.561e^-4	0.795	SYNONYMOUS_CODING bgcn DOWNSTREAM TBPH	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	22365562	X_22365562_SNP [dm3] X_22963726_SNP [dm6]	G	A	2.562e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19735454	2R_19735454_SNP [dm3] 2R_23847931_SNP [dm6]	C	T	2.563e^-4	0.795	UTR_3_PRIME ytr DOWNSTREAM CG5554
2R	19735459	2R_19735459_INS [dm3] 2R_23847936_INS [dm6]	T	TCATTTGGGTTTC...	2.563e^-4	0.795	UTR_3_PRIME ytr DOWNSTREAM CG5554
3L	5615573	3L_5615573_SNP [dm3] 3L_5622473_SNP [dm6]	A	G	2.570e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3L	5615598	3L_5615598_SNP [dm3] 3L_5622498_SNP [dm6]	A	G	2.570e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3R	14423301	3R_14423301_SNP [dm3] 3R_18597579_SNP [dm6]	C	G	2.571e^-4	0.795	NON_SYNONYMOUS_CODING CG14304 INTRON qin	TF binding site mE1_TFBS_chinmo
2R	824460	2R_824460_SNP [dm3] 2R_4936955_SNP [dm6]	T	A	2.577e^-4	0.795	INTRON Ir41a	transposable element FlyBase
3R	15014854	3R_15014854_SNP [dm3] 3R_19189132_SNP [dm6]	A	C	2.578e^-4	0.795	INTRON CG31475
3L	14583365	3L_14583365_SNP [dm3] 3L_14590265_SNP [dm6]	G	T	2.578e^-4	0.795	INTRON HGTX
2R	16188909	2R_16188909_SNP [dm3] 2R_20301404_SNP [dm6]	G	T	2.578e^-4	0.795	UPSTREAM CR44640 INTERGENIC
X	7960794	X_7960794_SNP [dm3] X_8066761_SNP [dm6]	T	C	2.581e^-4	0.795	INTRON mys
3R	6355104	3R_6355104_SNP [dm3] 3R_10529382_SNP [dm6]	G	T	2.591e^-4	0.795	INTRON hth
X	14182936	X_14182936_SNP [dm3] X_14288903_SNP [dm6]	T	C	2.591e^-4	0.795	SYNONYMOUS_CODING CG9400 DOWNSTREAM Muc12Ea	TF binding site mE1_TFBS_HSA
2R	19141324	2R_19141324_SNP [dm3] 2R_23253801_SNP [dm6]	G	A	2.593e^-4	0.795	INTERGENIC
X	14942469	X_14942469_SNP [dm3] X_15048436_SNP [dm6]	G	A	2.597e^-4	0.795	UPSTREAM CG5541 INTRON hiw & 1 other	transposable element FlyBase
3L	15270486	3L_15270486_SNP [dm3] 3L_15277386_SNP [dm6]	C	G	2.603e^-4	0.795	INTERGENIC
3R	10046175	3R_10046175_SNP [dm3] 3R_14220453_SNP [dm6]	T	A	2.604e^-4	0.795	UPSTREAM CG31326 DOWNSTREAM CG33109 INTERGENIC
3R	10046182	3R_10046182_SNP [dm3] 3R_14220460_SNP [dm6]	A	G	2.604e^-4	0.795	UPSTREAM CG31326 DOWNSTREAM CG33109 INTERGENIC
3R	10046184	3R_10046184_SNP [dm3] 3R_14220462_SNP [dm6]	T	A	2.604e^-4	0.795	UPSTREAM CG31326 DOWNSTREAM CG33109 INTERGENIC
3R	10046186	3R_10046186_SNP [dm3] 3R_14220464_SNP [dm6]	A	G	2.604e^-4	0.795	UPSTREAM CG31326 DOWNSTREAM CG33109 INTERGENIC
3L	10905993	3L_10905993_SNP [dm3] 3L_10912893_SNP [dm6]	C	T	2.604e^-4	0.795	INTERGENIC
3L	15606719	3L_15606719_SNP [dm3] 3L_15613619_SNP [dm6]	T	C	2.614e^-4	0.795	SYNONYMOUS_CODING comm3 UPSTREAM CG13449
2R	19745746	2R_19745746_SNP [dm3] 2R_23858223_SNP [dm6]	C	T	2.616e^-4	0.795	SYNONYMOUS_CODING bgcn DOWNSTREAM TBPH	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	14444762	2L_14444762_SNP [dm3] 2L_14444762_SNP [dm6]	G	T	2.629e^-4	0.795	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	3765890	2L_3765890_SNP [dm3] 2L_3765890_SNP [dm6]	C	G	2.637e^-4	0.795	UPSTREAM CG43707 DOWNSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_Trl
X	14904432	X_14904432_SNP [dm3] X_15010399_SNP [dm6]	G	A	2.653e^-4	0.795	UTR_3_PRIME hiw DOWNSTREAM hiw & 1 other	TF binding site BDTNP1_TFBS_dl
2L	3380464	2L_3380464_SNP [dm3] 2L_3380464_SNP [dm6]	T	C	2.677e^-4	0.795	INTERGENIC
3L	4406793	3L_4406793_SNP [dm3] 3L_4406793_SNP [dm6]	A	C	2.682e^-4	0.795	UPSTREAM DOR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	4406795	3L_4406795_SNP [dm3] 3L_4406795_SNP [dm6]	G	A	2.682e^-4	0.795	UPSTREAM DOR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	4406803	3L_4406803_SNP [dm3] 3L_4406803_SNP [dm6]	C	A	2.682e^-4	0.795	UPSTREAM DOR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	13413577	2R_13413577_SNP [dm3] 2R_17526072_SNP [dm6]	A	G	2.694e^-4	0.795	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6051633	3R_6051633_SNP [dm3] 3R_10225911_SNP [dm6]	A	T	2.695e^-4	0.795	NON_SYNONYMOUS_CODING CG42795 UPSTREAM CG42795 DOWNSTREAM CG34107
2R	14504011	2R_14504011_SNP [dm3] 2R_18616506_SNP [dm6]	C	G	2.707e^-4	0.795	SYNONYMOUS_CODING CG5327 DOWNSTREAM CG5493 & 1 other
2R	19731447	2R_19731447_SNP [dm3] 2R_23843924_SNP [dm6]	G	A	2.710e^-4	0.795	SYNONYMOUS_CODING Snap29 UPSTREAM shu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	3543899	3R_3543899_SNP [dm3] 3R_7718177_SNP [dm6]	C	T	2.715e^-4	0.795	INTERGENIC
2L	2902694	2L_2902694_SNP [dm3] 2L_2902694_SNP [dm6]	A	C	2.715e^-4	0.795	INTRON lilli	TF binding site mE1_TFBS_chinmo
3R	24765292	3R_24765292_SNP [dm3] 3R_28939570_SNP [dm6]	C	G	2.718e^-4	0.795	INTRON CG14521
2L	3388124	2L_3388124_SNP [dm3] 2L_3388124_SNP [dm6]	C	T	2.728e^-4	0.795	SYNONYMOUS_CODING CG42460 UPSTREAM CR45301 & 1 other
2L	22328190	2L_22328190_SNP [dm3] 2L_22328190_SNP [dm6]	A	T	2.731e^-4	0.795	INTRON CG17018	transposable element FlyBase
3L	14668822	3L_14668822_SNP [dm3] 3L_14675722_SNP [dm6]	A	T	2.736e^-4	0.795	INTRON ome & 1 other
X	18547556	X_18547556_SNP [dm3] X_18653523_SNP [dm6]	C	A	2.754e^-4	0.795	UTR_3_PRIME CG6659 UPSTREAM Ing3	TF binding site BDTNP1_TFBS_dl
3L	10731066	3L_10731066_INS [dm3] 3L_10737966_INS [dm6]	T	TTTATAAT	2.761e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	7949869	3L_7949869_SNP [dm3] 3L_7956769_SNP [dm6]	A	C	2.764e^-4	0.795	INTERGENIC
3R	9796859	3R_9796859_SNP [dm3] 3R_13971137_SNP [dm6]	A	G	2.776e^-4	0.795	UPSTREAM CR43460 INTRON rdx	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5998197	3L_5998197_SNP [dm3] 3L_6005097_SNP [dm6]	C	A	2.780e^-4	0.795	INTRON PVRAP	TF binding site mE1_TFBS_cad
X	6159384	X_6159384_SNP [dm3] X_6265351_SNP [dm6]	C	A	2.787e^-4	0.795	INTRON schlank	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14914222	3R_14914222_SNP [dm3] 3R_19088500_SNP [dm6]	C	G	2.788e^-4	0.795	INTRON cdi
2R	17205568	2R_17205568_DEL [dm3] 2R_21318063_DEL [dm6]	ATTCAACCATTT...	A	2.791e^-4	0.795	UTR_3_PRIME CG33655 INTRON CG9485
X	11320954	X_11320954_SNP [dm3] X_11426921_SNP [dm6]	A	T	2.799e^-4	0.795	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3923933	X_3923933_INS [dm3] X_4029900_INS [dm6]	A	AT	2.803e^-4	0.795	INTERGENIC
3R	18646633	3R_18646633_SNP [dm3] 3R_22820911_SNP [dm6]	G	A	2.806e^-4	0.795	INTERGENIC
2L	7381663	2L_7381663_SNP [dm3] 2L_7381663_SNP [dm6]	T	G	2.813e^-4	0.795	SYNONYMOUS_CODING ninaC
2L	7381675	2L_7381675_SNP [dm3] 2L_7381675_SNP [dm6]	C	T	2.813e^-4	0.795	SYNONYMOUS_CODING ninaC
2L	10343438	2L_10343438_SNP [dm3] 2L_10343438_SNP [dm6]	A	G	2.814e^-4	0.795	SYNONYMOUS_CODING Sps2 DOWNSTREAM CG31715	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	15296561	3R_15296561_SNP [dm3] 3R_19470839_SNP [dm6]	C	T	2.817e^-4	0.795	INTRON Dys
3R	15296569	3R_15296569_SNP [dm3] 3R_19470847_SNP [dm6]	C	A	2.817e^-4	0.795	INTRON Dys
3L	4470057	3L_4470057_SNP [dm3] 3L_4470057_SNP [dm6]	A	T	2.819e^-4	0.795	INTRON CG32249
3R	2132971	3R_2132971_SNP [dm3] 3R_6307249_SNP [dm6]	A	C	2.820e^-4	0.795	NON_SYNONYMOUS_CODING CG31556 DOWNSTREAM Osi16	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2134621	3R_2134621_SNP [dm3] 3R_6308899_SNP [dm6]	C	A	2.820e^-4	0.795	NON_SYNONYMOUS_CODING CG31556
3L	15658609	3L_15658609_SNP [dm3] 3L_15665509_SNP [dm6]	G	C	2.829e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	7027520	2R_7027520_SNP [dm3] 2R_11140015_SNP [dm6]	T	G	2.833e^-4	0.795	UTR_3_PRIME CG13229 DOWNSTREAM BBS4
2R	2793455	2R_2793455_SNP [dm3] 2R_6905950_SNP [dm6]	T	C	2.838e^-4	0.795	UTR_5_PRIME CG30158	TF binding site mE1_TFBS_chinmo
3L	12830968	3L_12830968_SNP [dm3] 3L_12837868_SNP [dm6]	T	C	2.839e^-4	0.795	INTRON CG10960
3L	12831039	3L_12831039_SNP [dm3] 3L_12837939_SNP [dm6]	T	A	2.839e^-4	0.795	INTRON CG10960
3R	5416244	3R_5416244_SNP [dm3] 3R_9590522_SNP [dm6]	G	A	2.840e^-4	0.795	SYNONYMOUS_CODING bocksbeutel UPSTREAM CG8312 DOWNSTREAM P58IPK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14221351	X_14221351_SNP [dm3] X_14327318_SNP [dm6]	A	G	2.851e^-4	0.795	INTRON dpr8	TF binding site mE1_TFBS_inv
2L	10181727	2L_10181727_SNP [dm3] 2L_10181727_SNP [dm6]	A	C	2.858e^-4	0.795	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
3L	10096464	3L_10096464_SNP [dm3] 3L_10103364_SNP [dm6]	C	G	2.863e^-4	0.795	INTRON dpr6
3L	10096467	3L_10096467_SNP [dm3] 3L_10103367_SNP [dm6]	A	G	2.863e^-4	0.795	INTRON dpr6
X	9731880	X_9731880_SNP [dm3] X_9837847_SNP [dm6]	A	G	2.866e^-4	0.795	INTRON CG32698
X	9731886	X_9731886_SNP [dm3] X_9837853_SNP [dm6]	T	A	2.866e^-4	0.795	INTRON CG32698
2L	3523508	2L_3523508_SNP [dm3] 2L_3523508_SNP [dm6]	G	C	2.867e^-4	0.795	NON_SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
2L	3523841	2L_3523841_SNP [dm3] 2L_3523841_SNP [dm6]	A	G	2.867e^-4	0.795	SYNONYMOUS_CODING Sr-CIV
3R	24652647	3R_24652647_SNP [dm3] 3R_28826925_SNP [dm6]	G	C	2.871e^-4	0.795	INTRON WASp
2R	1745010	2R_1745010_SNP [dm3] 2R_5857505_SNP [dm6]	G	A	2.881e^-4	0.795	SYNONYMOUS_CODING dpr12
2R	19739853	2R_19739853_SNP [dm3] 2R_23852330_SNP [dm6]	G	T	2.886e^-4	0.795	SYNONYMOUS_CODING gbb UPSTREAM ytr DOWNSTREAM bgcn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4800971	3L_4800971_SNP [dm3] 3L_4800971_SNP [dm6]	A	T	2.902e^-4	0.795	UPSTREAM CR44528 DOWNSTREAM CR45740 INTERGENIC
3R	6299585	3R_6299585_SNP [dm3] 3R_10473863_SNP [dm6]	G	T	2.910e^-4	0.795	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5963065	2L_5963065_SNP [dm3] 2L_5963065_SNP [dm6]	C	T	2.930e^-4	0.795	DOWNSTREAM psd INTERGENIC	TF binding site mE1_TFBS_cad
3L	8485532	3L_8485532_SNP [dm3] 3L_8492432_SNP [dm6]	A	G	2.932e^-4	0.795	INTRON CG43163
2R	16427367	2R_16427367_SNP [dm3] 2R_20539862_SNP [dm6]	T	G	2.941e^-4	0.795	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25608446	3R_25608446_SNP [dm3] 3R_29782724_SNP [dm6]	A	T	2.952e^-4	0.795	UTR_5_PRIME kay INTRON kay	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	3092554	3L_3092554_SNP [dm3] 3L_3092554_SNP [dm6]	A	G	2.959e^-4	0.795	SYNONYMOUS_CODING Cht7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7153755	2L_7153755_SNP [dm3] 2L_7153755_SNP [dm6]	T	C	2.985e^-4	0.795	INTRON Pvf3
2L	4930548	2L_4930548_SNP [dm3] 2L_4930548_SNP [dm6]	A	G	3.006e^-4	0.795	INTRON hoe1
3R	10145254	3R_10145254_SNP [dm3] 3R_14319532_SNP [dm6]	C	T	3.010e^-4	0.795	UTR_3_PRIME pr-set7 DOWNSTREAM Afti
3L	11184066	3L_11184066_DEL [dm3] 3L_11190966_DEL [dm6]	TGACAAATCTCAGGGAAA...	T	3.024e^-4	0.795	INTRON GlcAT-P
2R	9347601	2R_9347601_SNP [dm3] 2R_13460096_SNP [dm6]	C	T	3.038e^-4	0.795	INTRON arr	TF binding site mE1_TFBS_chinmo
2R	16400509	2R_16400509_SNP [dm3] 2R_20513004_SNP [dm6]	C	T	3.055e^-4	0.795	SPLICE_SITE_REGION CG13426 SYNONYMOUS_CODING CG13426 DOWNSTREAM CR44649
2R	19729335	2R_19729335_SNP [dm3] 2R_23841812_SNP [dm6]	C	T	3.062e^-4	0.795	SYNONYMOUS_CODING shu	TF binding site mE1_TFBS_cad
2R	19731258	2R_19731258_SNP [dm3] 2R_23843735_SNP [dm6]	A	C	3.062e^-4	0.795	SYNONYMOUS_CODING Snap29 UPSTREAM shu	TF binding site mE1_TFBS_cad
2R	19731984	2R_19731984_SNP [dm3] 2R_23844461_SNP [dm6]	T	C	3.062e^-4	0.795	SYNONYMOUS_CODING Snap29 UPSTREAM CG5554	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13471918	3R_13471918_SNP [dm3] 3R_17646196_SNP [dm6]	T	A	3.063e^-4	0.795	UPSTREAM tRNA:CR31579 & 1 other DOWNSTREAM CG43175 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2758370	2L_2758370_SNP [dm3] 2L_2758370_SNP [dm6]	T	G	3.070e^-4	0.795	UPSTREAM CR44772 DOWNSTREAM Snapin & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA
3L	7161229	3L_7161229_SNP [dm3] 3L_7168129_SNP [dm6]	C	T	3.076e^-4	0.795	INTRON Dscam2
3L	14586611	3L_14586611_SNP [dm3] 3L_14593511_SNP [dm6]	G	A	3.077e^-4	0.795	INTRON HGTX
2L	16490195	2L_16490195_INS [dm3] 2L_16490195_INS [dm6]	T	TT	3.090e^-4	0.795	DOWNSTREAM CR44994 & 1 other INTERGENIC
3L	335010	3L_335010_SNP [dm3] 3L_335010_SNP [dm6]	T	C	3.093e^-4	0.795	SYNONYMOUS_CODING mthl10 INTRON Ptpmeg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11320959	X_11320959_SNP [dm3] X_11426926_SNP [dm6]	A	C	3.107e^-4	0.795	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11631056	3L_11631056_SNP [dm3] 3L_11637956_SNP [dm6]	C	T	3.112e^-4	0.795	INTRON CG32091
2L	10802451	2L_10802451_SNP [dm3] 2L_10802451_SNP [dm6]	T	G	3.123e^-4	0.795	INTRON CR44581
3L	11577403	3L_11577403_SNP [dm3] 3L_11584303_SNP [dm6]	G	A	3.123e^-4	0.795	SYNONYMOUS_CODING rt UPSTREAM CG32086	TF binding site mE1_TFBS_cad
3L	4410440	3L_4410440_SNP [dm3] 3L_4410440_SNP [dm6]	A	T	3.149e^-4	0.795	INTRON DOR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3L	14815037	3L_14815037_SNP [dm3] 3L_14821937_SNP [dm6]	A	C	3.152e^-4	0.795	INTRON CG17839
3L	14474037	3L_14474037_SNP [dm3] 3L_14480937_SNP [dm6]	C	A	3.168e^-4	0.795	INTRON bbg
3L	14474068	3L_14474068_SNP [dm3] 3L_14480968_SNP [dm6]	T	C	3.168e^-4	0.795	INTRON bbg
3L	14814995	3L_14814995_SNP [dm3] 3L_14821895_SNP [dm6]	G	T	3.175e^-4	0.795	INTRON CG17839
3R	26139035	3R_26139035_SNP [dm3] 3R_30313313_SNP [dm6]	G	C	3.178e^-4	0.795	INTRON hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19733258	2R_19733258_SNP [dm3] 2R_23845735_SNP [dm6]	C	A	3.194e^-4	0.795	UPSTREAM Snap29 INTRON CG5554	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13718420	2L_13718420_SNP [dm3] 2L_13718420_SNP [dm6]	T	A	3.196e^-4	0.795	INTERGENIC
3R	4881211	3R_4881211_SNP [dm3] 3R_9055489_SNP [dm6]	T	C	3.201e^-4	0.795	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	709696	3L_709696_SNP [dm3] 3L_709696_SNP [dm6]	C	T	3.202e^-4	0.795	INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	11596200	3L_11596200_SNP [dm3] 3L_11603100_SNP [dm6]	G	C	3.213e^-4	0.795	SYNONYMOUS_CODING CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	15173056	2R_15173056_DEL [dm3] 2R_19285551_DEL [dm6]	AGTCTAACAAAATTAGTA...	A	3.218e^-4	0.795	UTR_3_PRIME CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
3L	10731209	3L_10731209_SNP [dm3] 3L_10738109_SNP [dm6]	C	T	3.221e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	10905762	3L_10905762_SNP [dm3] 3L_10912662_SNP [dm6]	A	T	3.233e^-4	0.795	INTERGENIC
X	4236257	X_4236257_SNP [dm3] X_4342224_SNP [dm6]	T	C	3.235e^-4	0.795	INTRON norpA
2R	10368916	2R_10368916_SNP [dm3] 2R_14481411_SNP [dm6]	T	A	3.239e^-4	0.795	UTR_5_PRIME L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5650232	3L_5650232_SNP [dm3] 3L_5657132_SNP [dm6]	T	C	3.240e^-4	0.795	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5650256	3L_5650256_SNP [dm3] 3L_5657156_SNP [dm6]	G	C	3.240e^-4	0.795	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3301608	X_3301608_SNP [dm3] X_3407575_SNP [dm6]	G	A	3.241e^-4	0.795	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13342931	3L_13342931_SNP [dm3] 3L_13349831_SNP [dm6]	C	T	3.251e^-4	0.795	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19210079	X_19210079_DEL [dm3] X_19316046_DEL [dm6]	TATT	T	3.258e^-4	0.795	INTRON out	TF binding site mE1_TFBS_Trl
2R	1715544	2R_1715544_SNP [dm3] 2R_5828039_SNP [dm6]	C	T	3.258e^-4	0.795	INTRON dpr12
3R	13471016	3R_13471016_SNP [dm3] 3R_17645294_SNP [dm6]	C	T	3.259e^-4	0.795	UPSTREAM tRNA:CR31578 DOWNSTREAM tRNA:CR31568 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	13471144	3R_13471144_SNP [dm3] 3R_17645422_SNP [dm6]	T	C	3.259e^-4	0.795	UPSTREAM tRNA:CR31578 & 2 others DOWNSTREAM CG43175 INTERGENIC	TF binding site mE1_TFBS_cad
X	16344746	X_16344746_SNP [dm3] X_16450713_SNP [dm6]	A	T	3.259e^-4	0.795	INTRON Rbp2
2R	20197475	2R_20197475_SNP [dm3] 2R_24309952_SNP [dm6]	T	C	3.263e^-4	0.795	INTRON betaTub60D	regulatory region REDfly_CRMs
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	3.266e^-4	0.795	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	12060263	2R_12060263_SNP [dm3] 2R_16172758_SNP [dm6]	G	A	3.272e^-4	0.795	NON_SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
3L	11613699	3L_11613699_SNP [dm3] 3L_11620599_SNP [dm6]	A	T	3.275e^-4	0.795	UTR_3_PRIME CG6084 UPSTREAM Muc68Ca
2R	9145064	2R_9145064_SNP [dm3] 2R_13257559_SNP [dm6]	A	G	3.280e^-4	0.795	UPSTREAM CG10799 DOWNSTREAM CG4716 INTERGENIC
X	16051345	X_16051345_SNP [dm3] X_16157312_SNP [dm6]	G	T	3.285e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13470734	3R_13470734_SNP [dm3] 3R_17645012_SNP [dm6]	T	C	3.288e^-4	0.795	NON_SYNONYMOUS_CODING CG43175 UPSTREAM tRNA:CR31578 DOWNSTREAM tRNA:CR31568	TF binding site mE1_TFBS_cad
3R	14971533	3R_14971533_SNP [dm3] 3R_19145811_SNP [dm6]	G	C	3.298e^-4	0.795	SYNONYMOUS_CODING Ppcs
X	3525258	X_3525258_SNP [dm3] X_3631225_SNP [dm6]	A	C	3.313e^-4	0.795	INTRON AstA-R1
3L	18584053	3L_18584053_SNP [dm3] 3L_18590953_SNP [dm6]	A	G	3.315e^-4	0.795	DOWNSTREAM CG7271 INTERGENIC	transposable element FlyBase
3L	2808982	3L_2808982_SNP [dm3] 3L_2808982_SNP [dm6]	T	G	3.318e^-4	0.795	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	13413915	2L_13413915_SNP [dm3] 2L_13413915_SNP [dm6]	C	T	3.320e^-4	0.795	SYNONYMOUS_CODING CG16956 DOWNSTREAM CG16848
3R	23307798	3R_23307798_SNP [dm3] 3R_27482076_SNP [dm6]	T	A	3.327e^-4	0.795	UTR_3_PRIME Cyp6a18
3L	9865768	3L_9865768_SNP [dm3] 3L_9872668_SNP [dm6]	A	T	3.336e^-4	0.795	INTERGENIC
2R	12060270	2R_12060270_SNP [dm3] 2R_16172765_SNP [dm6]	G	A	3.338e^-4	0.795	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
2R	6568748	2R_6568748_SNP [dm3] 2R_10681243_SNP [dm6]	G	A	3.341e^-4	0.795	INTRON stan	TF binding site mE1_TFBS_HSA
3R	24888731	3R_24888731_SNP [dm3] 3R_29063009_SNP [dm6]	T	A	3.368e^-4	0.795	UPSTREAM CG11873 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
X	12364072	X_12364072_SNP [dm3] X_12470039_SNP [dm6]	T	C	3.370e^-4	0.795	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8365190	X_8365190_SNP [dm3] X_8471157_SNP [dm6]	G	A	3.381e^-4	0.795	INTRON CG33223 & 1 other
3L	10607780	3L_10607780_SNP [dm3] 3L_10614680_SNP [dm6]	A	T	3.386e^-4	0.795	INTERGENIC
3L	10607787	3L_10607787_SNP [dm3] 3L_10614687_SNP [dm6]	C	T	3.386e^-4	0.795	INTERGENIC
2R	2432304	2R_2432304_SNP [dm3] 2R_6544799_SNP [dm6]	T	C	3.395e^-4	0.795	INTRON jing	TF binding site BDTNP1_TFBS_dl
3L	7161434	3L_7161434_SNP [dm3] 3L_7168334_SNP [dm6]	G	A	3.414e^-4	0.795	INTRON Dscam2
2L	13927635	2L_13927635_SNP [dm3] 2L_13927635_SNP [dm6]	G	A	3.416e^-4	0.795	INTRON Ance-3
X	10872188	X_10872188_SNP [dm3] X_10978155_SNP [dm6]	T	C	3.416e^-4	0.795	INTRON CG42339
2R	16571227	2R_16571227_SNP [dm3] 2R_20683722_SNP [dm6]	T	G	3.417e^-4	0.795	INTERGENIC
X	9505372	X_9505372_SNP [dm3] X_9611339_SNP [dm6]	A	G	3.425e^-4	0.795	SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8762613	2L_8762613_SNP [dm3] 2L_8762613_SNP [dm6]	C	G	3.428e^-4	0.795	INTERGENIC
2L	7973206	2L_7973206_SNP [dm3] 2L_7973206_SNP [dm6]	A	C	3.431e^-4	0.795	INTRON Snoo
2R	11082215	2R_11082215_SNP [dm3] 2R_15194710_SNP [dm6]	T	A	3.434e^-4	0.795	UPSTREAM CG43829 INTERGENIC
2R	16591750	2R_16591750_SNP [dm3] 2R_20704245_SNP [dm6]	A	G	3.434e^-4	0.795	INTRON dpr
3L	15567587	3L_15567587_SNP [dm3] 3L_15574487_SNP [dm6]	A	C	3.434e^-4	0.795	INTRON CG6498	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	16734342	3L_16734342_SNP [dm3] 3L_16741242_SNP [dm6]	C	T	3.434e^-4	0.795	INTERGENIC
3R	24678153	3R_24678153_SNP [dm3] 3R_28852431_SNP [dm6]	C	A	3.434e^-4	0.795	INTRON spg
3R	26269937	3R_26269937_SNP [dm3] 3R_30444215_SNP [dm6]	C	A	3.434e^-4	0.795	SYNONYMOUS_CODING Osi23 UPSTREAM CG15537
X	1412081	X_1412081_SNP [dm3] X_1518048_SNP [dm6]	C	T	3.434e^-4	0.795	DOWNSTREAM inc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	8423931	X_8423931_SNP [dm3] X_8529898_SNP [dm6]	A	G	3.434e^-4	0.795	UPSTREAM PIP82 INTRON Nrg	TF binding site BDTNP1_TFBS_dl
3L	13269262	3L_13269262_SNP [dm3] 3L_13276162_SNP [dm6]	A	G	3.435e^-4	0.795	SYNONYMOUS_CODING caps	TF binding site mE1_TFBS_chinmo
3L	14188848	3L_14188848_SNP [dm3] 3L_14195748_SNP [dm6]	A	C	3.441e^-4	0.795	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13721290	2L_13721290_SNP [dm3] 2L_13721290_SNP [dm6]	T	A	3.449e^-4	0.795	DOWNSTREAM CG9014 INTERGENIC
2R	9007613	2R_9007613_SNP [dm3] 2R_13120108_SNP [dm6]	T	A	3.452e^-4	0.795	INTRON CG13325
3L	14226808	3L_14226808_SNP [dm3] 3L_14233708_SNP [dm6]	A	G	3.455e^-4	0.795	NON_SYNONYMOUS_CODING CG7924 DOWNSTREAM nuf	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	767684	2L_767684_SNP [dm3] 2L_767684_SNP [dm6]	G	A	3.457e^-4	0.795	INTERGENIC
3R	3813272	3R_3813272_SNP [dm3] 3R_7987550_SNP [dm6]	G	T	3.467e^-4	0.795	INTRON CG2781
3R	3813287	3R_3813287_SNP [dm3] 3R_7987565_SNP [dm6]	A	G	3.467e^-4	0.795	INTRON CG2781
X	9505336	X_9505336_SNP [dm3] X_9611303_SNP [dm6]	C	T	3.473e^-4	0.795	SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15732893	2L_15732893_SNP [dm3] 2L_15732893_SNP [dm6]	A	T	3.479e^-4	0.795	INTRON CycE	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	4418733	3L_4418733_SNP [dm3] 3L_4418733_SNP [dm6]	A	G	3.479e^-4	0.795	START_GAINED DOR UTR_5_PRIME DOR INTRON DOR	TF binding site mE1_TFBS_chinmo
3R	25296725	3R_25296725_SNP [dm3] 3R_29471003_SNP [dm6]	A	G	3.481e^-4	0.795	INTRON Ptp99A
3L	413912	3L_413912_SNP [dm3] 3L_413912_SNP [dm6]	C	T	3.487e^-4	0.795	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	15733620	2L_15733620_SNP [dm3] 2L_15733620_SNP [dm6]	T	C	3.498e^-4	0.795	INTRON CycE	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16399825	2R_16399825_SNP [dm3] 2R_20512320_SNP [dm6]	G	T	3.504e^-4	0.795	DOWNSTREAM CR44648 & 2 others INTERGENIC
3L	11471804	3L_11471804_SNP [dm3] 3L_11478704_SNP [dm6]	C	T	3.518e^-4	0.795	INTERGENIC
X	10912796	X_10912796_SNP [dm3] X_11018763_SNP [dm6]	C	T	3.529e^-4	0.795	INTRON CG42339
2R	16831261	2R_16831261_SNP [dm3] 2R_20943756_SNP [dm6]	A	C	3.533e^-4	0.795	UPSTREAM Act57B INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3276705	2L_3276705_SNP [dm3] 2L_3276705_SNP [dm6]	G	A	3.539e^-4	0.795	SYNONYMOUS_CODING CG3332	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7387641	2L_7387641_SNP [dm3] 2L_7387641_SNP [dm6]	T	A	3.545e^-4	0.795	UPSTREAM gudu INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16400515	2R_16400515_SNP [dm3] 2R_20513010_SNP [dm6]	A	G	3.546e^-4	0.795	DOWNSTREAM CR44649 INTRON CG13426
2R	16400529	2R_16400529_SNP [dm3] 2R_20513024_SNP [dm6]	T	A	3.546e^-4	0.795	DOWNSTREAM CR44649 INTRON CG13426
X	9663293	X_9663293_DEL [dm3] X_9769260_DEL [dm6]	ATTCAAATAGC...	A	3.547e^-4	0.795	INTERGENIC
2R	19024988	2R_19024988_SNP [dm3] 2R_23137465_SNP [dm6]	T	A	3.567e^-4	0.795	INTERGENIC
X	11408330	X_11408330_SNP [dm3] X_11514297_SNP [dm6]	T	A	3.568e^-4	0.795	INTRON Drak
3R	12545979	3R_12545979_SNP [dm3] 3R_16720257_SNP [dm6]	T	A	3.570e^-4	0.795	INTRON Ubx	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8413801	2R_8413801_SNP [dm3] 2R_12526296_SNP [dm6]	A	G	3.580e^-4	0.795	INTERGENIC
3L	12696493	3L_12696493_SNP [dm3] 3L_12703393_SNP [dm6]	A	C	3.587e^-4	0.795	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17444982	2L_17444982_SNP [dm3] 2L_17444982_SNP [dm6]	C	G	3.588e^-4	0.795	INTRON dl
2L	17445031	2L_17445031_SNP [dm3] 2L_17445031_SNP [dm6]	C	G	3.588e^-4	0.795	INTRON dl
2L	4128485	2L_4128485_SNP [dm3] 2L_4128485_SNP [dm6]	T	C	3.588e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5981846	2L_5981846_SNP [dm3] 2L_5981846_SNP [dm6]	A	T	3.591e^-4	0.795	UPSTREAM chic & 1 other INTRON eIF-4a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	5355981	2R_5355981_SNP [dm3] 2R_9468476_SNP [dm6]	G	C	3.591e^-4	0.795	INTRON Camta
2L	19915382	2L_19915382_SNP [dm3] 2L_19915382_SNP [dm6]	G	A	3.594e^-4	0.795	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	11044422	3L_11044422_SNP [dm3] 3L_11051322_SNP [dm6]	T	G	3.604e^-4	0.795	UTR_5_PRIME CG43693 UPSTREAM CG43693 DOWNSTREAM CR45119
3R	14739161	3R_14739161_INS [dm3] 3R_18913439_INS [dm6]	A	ACATACATA	3.606e^-4	0.795	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3L	416051	3L_416051_SNP [dm3] 3L_416051_SNP [dm6]	A	G	3.613e^-4	0.795	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	416257	3L_416257_SNP [dm3] 3L_416257_SNP [dm6]	A	G	3.613e^-4	0.795	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	19025081	2R_19025081_SNP [dm3] 2R_23137558_SNP [dm6]	C	T	3.622e^-4	0.795	INTERGENIC
3R	10122995	3R_10122995_SNP [dm3] 3R_14297273_SNP [dm6]	C	A	3.624e^-4	0.795	UPSTREAM CG12207 INTRON CG12207
X	1146926	X_1146926_SNP [dm3] X_1252893_SNP [dm6]	G	T	3.626e^-4	0.795	INTRON Atf3
X	1146927	X_1146927_SNP [dm3] X_1252894_SNP [dm6]	G	A	3.626e^-4	0.795	INTRON Atf3
3L	5689937	3L_5689937_SNP [dm3] 3L_5696837_SNP [dm6]	C	T	3.632e^-4	0.795	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26459822	3R_26459822_SNP [dm3] 3R_30634100_SNP [dm6]	T	A	3.642e^-4	0.795	INTERGENIC
X	5716114	X_5716114_SNP [dm3] X_5822081_SNP [dm6]	G	A	3.643e^-4	0.795	INTRON CG15765	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24652621	3R_24652621_SNP [dm3] 3R_28826899_SNP [dm6]	C	T	3.648e^-4	0.795	INTRON WASp
3L	7693079	3L_7693079_SNP [dm3] 3L_7699979_SNP [dm6]	T	C	3.651e^-4	0.795	SYNONYMOUS_CODING Ank2 INTRON CG32373
3L	4410409	3L_4410409_DEL [dm3] 3L_4410409_DEL [dm6]	CTAAT	A	3.652e^-4	0.795	INTRON DOR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	7643229	2L_7643229_SNP [dm3] 2L_7643229_SNP [dm6]	A	G	3.661e^-4	0.795	UTR_3_PRIME Slob DOWNSTREAM Slob
3L	16864698	3L_16864698_SNP [dm3] 3L_16871598_SNP [dm6]	G	T	3.662e^-4	0.795	INTRON Lmpt
2L	2836985	2L_2836985_SNP [dm3] 2L_2836985_SNP [dm6]	G	A	3.663e^-4	0.795	INTRON CG3119
2R	10446997	2R_10446997_SNP [dm3] 2R_14559492_SNP [dm6]	C	T	3.664e^-4	0.795	INTRON ttv
X	7083382	X_7083382_SNP [dm3] X_7189349_SNP [dm6]	A	G	3.666e^-4	0.795	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	8460942	3L_8460942_SNP [dm3] 3L_8467842_SNP [dm6]	G	A	3.687e^-4	0.795	SYNONYMOUS_CODING Gug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9145070	2R_9145070_SNP [dm3] 2R_13257565_SNP [dm6]	A	C	3.688e^-4	0.795	UPSTREAM CG10799 DOWNSTREAM CG4716 INTERGENIC
3L	5649135	3L_5649135_SNP [dm3] 3L_5656035_SNP [dm6]	C	A	3.690e^-4	0.795	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14927593	X_14927593_SNP [dm3] X_15033560_SNP [dm6]	T	C	3.697e^-4	0.795	INTRON hiw & 1 other
X	14927623	X_14927623_SNP [dm3] X_15033590_SNP [dm6]	C	T	3.697e^-4	0.795	INTRON hiw & 1 other
3R	6048313	3R_6048313_SNP [dm3] 3R_10222591_SNP [dm6]	C	T	3.702e^-4	0.795	UPSTREAM CG12420 DOWNSTREAM CG12817 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6048371	3R_6048371_SNP [dm3] 3R_10222649_SNP [dm6]	C	T	3.702e^-4	0.795	UPSTREAM CG12420 DOWNSTREAM CG12817 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6049436	3R_6049436_SNP [dm3] 3R_10223714_SNP [dm6]	A	T	3.702e^-4	0.795	UTR_3_PRIME CG12817 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6049592	3R_6049592_SNP [dm3] 3R_10223870_SNP [dm6]	C	A	3.702e^-4	0.795	UTR_3_PRIME CG12817 DOWNSTREAM CG12420	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6055834	3R_6055834_SNP [dm3] 3R_10230112_SNP [dm6]	C	T	3.702e^-4	0.795	INTRON CG42795
2L	5514506	2L_5514506_SNP [dm3] 2L_5514506_SNP [dm6]	T	C	3.713e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6569028	2R_6569028_INS [dm3] 2R_10681523_INS [dm6]	T	TT	3.714e^-4	0.795	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10508886	3L_10508886_SNP [dm3] 3L_10515786_SNP [dm6]	T	C	3.716e^-4	0.795	UPSTREAM A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	12363989	X_12363989_SNP [dm3] X_12469956_SNP [dm6]	T	C	3.734e^-4	0.795	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10448074	2R_10448074_SNP [dm3] 2R_14560569_SNP [dm6]	A	G	3.734e^-4	0.795	INTRON ttv
2R	10448076	2R_10448076_SNP [dm3] 2R_14560571_SNP [dm6]	G	A	3.734e^-4	0.795	INTRON ttv
3L	16908911	3L_16908911_SNP [dm3] 3L_16915811_SNP [dm6]	C	T	3.736e^-4	0.795	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	3.768e^-4	0.795	INTRON fry	TF binding site mE1_TFBS_cad
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	3.768e^-4	0.795	INTRON fry	TF binding site mE1_TFBS_cad
3L	14513137	3L_14513137_SNP [dm3] 3L_14520037_SNP [dm6]	G	T	3.776e^-4	0.795	INTRON bbg & 1 other
3R	12170920	3R_12170920_SNP [dm3] 3R_16345198_SNP [dm6]	G	A	3.778e^-4	0.795	NON_SYNONYMOUS_CODING pad DOWNSTREAM CG14879
3L	16325313	3L_16325313_SNP [dm3] 3L_16332213_SNP [dm6]	T	G	3.780e^-4	0.795	NON_SYNONYMOUS_CODING retinin DOWNSTREAM CG33061 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10695675	3L_10695675_SNP [dm3] 3L_10702575_SNP [dm6]	A	T	3.783e^-4	0.795	INTERGENIC
3R	19540177	3R_19540177_SNP [dm3] 3R_23714455_SNP [dm6]	A	G	3.793e^-4	0.795	INTRON nau
2L	13671788	2L_13671788_SNP [dm3] 2L_13671788_SNP [dm6]	T	G	3.805e^-4	0.795	DOWNSTREAM CG18507 INTRON CG18507
X	16343083	X_16343083_SNP [dm3] X_16449050_SNP [dm6]	G	T	3.809e^-4	0.795	UPSTREAM Rbp2 & 1 other INTRON Rbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	18694355	X_18694355_SNP [dm3] X_18800322_SNP [dm6]	A	T	3.814e^-4	0.795	INTRON Pk17E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10704601	2L_10704601_SNP [dm3] 2L_10704601_SNP [dm6]	C	T	3.814e^-4	0.795	SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site mE1_TFBS_chinmo
2L	3523445	2L_3523445_SNP [dm3] 2L_3523445_SNP [dm6]	A	G	3.822e^-4	0.795	SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
3R	21385360	3R_21385360_SNP [dm3] 3R_25559638_SNP [dm6]	C	T	3.830e^-4	0.795	INTRON msi
2R	6280663	2R_6280663_SNP [dm3] 2R_10393158_SNP [dm6]	C	T	3.830e^-4	0.795	INTRON CG42732
2L	8070477	2L_8070477_SNP [dm3] 2L_8070477_SNP [dm6]	A	G	3.833e^-4	0.795	INTRON poe
3L	10607798	3L_10607798_SNP [dm3] 3L_10614698_SNP [dm6]	C	G	3.838e^-4	0.795	INTERGENIC
3L	10607801	3L_10607801_SNP [dm3] 3L_10614701_SNP [dm6]	G	T	3.838e^-4	0.795	INTERGENIC
3L	10607808	3L_10607808_SNP [dm3] 3L_10614708_SNP [dm6]	C	T	3.838e^-4	0.795	INTERGENIC
3L	10607809	3L_10607809_SNP [dm3] 3L_10614709_SNP [dm6]	A	T	3.838e^-4	0.795	INTERGENIC
3L	10607813	3L_10607813_SNP [dm3] 3L_10614713_SNP [dm6]	A	T	3.838e^-4	0.795	INTERGENIC
3L	10607814	3L_10607814_SNP [dm3] 3L_10614714_SNP [dm6]	G	T	3.838e^-4	0.795	INTERGENIC
3R	8588773	3R_8588773_SNP [dm3] 3R_12763051_SNP [dm6]	C	A	3.855e^-4	0.795	INTRON beat-Vc
3R	8588945	3R_8588945_SNP [dm3] 3R_12763223_SNP [dm6]	A	G	3.855e^-4	0.795	INTRON beat-Vc
2L	7455579	2L_7455579_SNP [dm3] 2L_7455579_SNP [dm6]	A	G	3.863e^-4	0.795	SYNONYMOUS_CODING Gr28b	TF binding site mE1_TFBS_HSA
X	3889413	X_3889413_SNP [dm3] X_3995380_SNP [dm6]	A	G	3.884e^-4	0.795	INTERGENIC
2R	18893791	2R_18893791_SNP [dm3] 2R_23006268_SNP [dm6]	A	C	3.891e^-4	0.795	INTRON twi
2R	19825921	2R_19825921_SNP [dm3] 2R_23938398_SNP [dm6]	C	T	3.894e^-4	0.795	NON_SYNONYMOUS_CODING CG3735	TF binding site mE1_TFBS_sens
2R	2953499	2R_2953499_SNP [dm3] 2R_7065994_SNP [dm6]	G	A	3.904e^-4	0.795	SYNONYMOUS_STOP Tsp42Er
2R	2954135	2R_2954135_SNP [dm3] 2R_7066630_SNP [dm6]	T	C	3.904e^-4	0.795	DOWNSTREAM Tsp42Er INTERGENIC	TF binding site mE1_TFBS_cad
2R	10838615	2R_10838615_SNP [dm3] 2R_14951110_SNP [dm6]	A	T	3.911e^-4	0.795	UPSTREAM aPKC INTRON aPKC
2L	16170031	2L_16170031_SNP [dm3] 2L_16170031_SNP [dm6]	C	T	3.914e^-4	0.795	INTRON Ca-alpha1D
2R	15046118	2R_15046118_SNP [dm3] 2R_19158613_SNP [dm6]	T	C	3.917e^-4	0.795	INTRON ena	TF binding site mE1_TFBS_inv
3R	15292919	3R_15292919_DEL [dm3] 3R_19467197_DEL [dm6]	GATAAGTACAT...	G	3.926e^-4	0.795	INTRON Dys
3L	6789870	3L_6789870_SNP [dm3] 3L_6796770_SNP [dm6]	A	T	3.937e^-4	0.795	INTERGENIC
2L	10269942	2L_10269942_SNP [dm3] 2L_10269942_SNP [dm6]	G	C	3.940e^-4	0.795	UPSTREAM Mulk DOWNSTREAM CG4957 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	7319392	X_7319392_SNP [dm3] X_7425359_SNP [dm6]	T	C	3.948e^-4	0.795	UTR_3_PRIME CG32726 UPSTREAM CG15036 DOWNSTREAM CG32726
2L	2900065	2L_2900065_SNP [dm3] 2L_2900065_SNP [dm6]	A	C	3.952e^-4	0.795	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2900071	2L_2900071_SNP [dm3] 2L_2900071_SNP [dm6]	A	C	3.952e^-4	0.795	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1418764	3L_1418764_SNP [dm3] 3L_1418764_SNP [dm6]	A	T	3.968e^-4	0.795	DOWNSTREAM FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
3R	10364938	3R_10364938_SNP [dm3] 3R_14539216_SNP [dm6]	G	T	3.980e^-4	0.795	INTRON Pde6
2L	9053262	2L_9053262_SNP [dm3] 2L_9053262_SNP [dm6]	T	A	4.001e^-4	0.795	INTRON CG31708
3L	2673180	3L_2673180_SNP [dm3] 3L_2673180_SNP [dm6]	G	A	4.004e^-4	0.795	SYNONYMOUS_CODING Fife
3L	2673210	3L_2673210_SNP [dm3] 3L_2673210_SNP [dm6]	T	C	4.004e^-4	0.795	SYNONYMOUS_CODING Fife
2R	12832291	2R_12832291_INS [dm3] 2R_16944786_INS [dm6]	A	ACCATA	4.009e^-4	0.795	UTR_3_PRIME Pkc53E UPSTREAM CG15614
2L	10191683	2L_10191683_SNP [dm3] 2L_10191683_SNP [dm6]	A	G	4.011e^-4	0.795	SYNONYMOUS_CODING Sur UPSTREAM CG31874
3R	14739820	3R_14739820_SNP [dm3] 3R_18914098_SNP [dm6]	T	C	4.021e^-4	0.795	UPSTREAM Xrp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	10593279	3R_10593279_SNP [dm3] 3R_14767557_SNP [dm6]	T	C	4.028e^-4	0.795	INTRON jvl
3R	27039197	3R_27039197_SNP [dm3] 3R_31213475_SNP [dm6]	T	G	4.033e^-4	0.795	UTR_5_PRIME CG1542 UPSTREAM Zwilch	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	5129759	3R_5129759_SNP [dm3] 3R_9304037_SNP [dm6]	C	A	4.043e^-4	0.795	INTRON CG8861
3R	10696338	3R_10696338_SNP [dm3] 3R_14870616_SNP [dm6]	A	T	4.052e^-4	0.795	INTRON btsz
X	4642847	X_4642847_SNP [dm3] X_4748814_SNP [dm6]	T	C	4.052e^-4	0.795	INTERGENIC
3R	6286954	3R_6286954_SNP [dm3] 3R_10461232_SNP [dm6]	C	T	4.055e^-4	0.795	EXON CR44939	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	2758563	2L_2758563_SNP [dm3] 2L_2758563_SNP [dm6]	A	G	4.071e^-4	0.795	NON_SYNONYMOUS_CODING CG9960 UTR_3_PRIME Snapin UPSTREAM CR44772 DOWNSTREAM Bacc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
X	2400397	X_2400397_SNP [dm3] X_2506364_SNP [dm6]	C	G	4.072e^-4	0.795	UPSTREAM trol INTRON trol
X	2400416	X_2400416_SNP [dm3] X_2506383_SNP [dm6]	T	G	4.072e^-4	0.795	UPSTREAM trol INTRON trol
X	2400432	X_2400432_SNP [dm3] X_2506399_SNP [dm6]	G	C	4.072e^-4	0.795	UPSTREAM trol INTRON trol
2L	4923541	2L_4923541_SNP [dm3] 2L_4923541_SNP [dm6]	G	T	4.074e^-4	0.795	INTRON hoe1
2L	10792203	2L_10792203_SNP [dm3] 2L_10792203_SNP [dm6]	T	A	4.077e^-4	0.795	DOWNSTREAM CG31870 INTRON CG31869
2L	10792213	2L_10792213_SNP [dm3] 2L_10792213_SNP [dm6]	A	T	4.077e^-4	0.795	DOWNSTREAM CG31870 INTRON CG31869
3L	536533	3L_536533_SNP [dm3] 3L_536533_SNP [dm6]	A	G	4.081e^-4	0.795	INTRON klar
2R	15282981	2R_15282981_SNP [dm3] 2R_19395476_SNP [dm6]	T	G	4.092e^-4	0.795	DOWNSTREAM cer INTRON SdhA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2R	13620677	2R_13620677_SNP [dm3] 2R_17733172_SNP [dm6]	T	A	4.104e^-4	0.795	UPSTREAM CG34195 DOWNSTREAM CG4984 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	881608	2L_881608_SNP [dm3] 2L_881608_SNP [dm6]	A	T	4.113e^-4	0.795	INTRON CG15824	TF binding site mE1_TFBS_cad
3L	18248220	3L_18248220_DEL [dm3] 3L_18255120_DEL [dm6]	GAACTATTG	G	4.136e^-4	0.795	INTERGENIC
3R	13472363	3R_13472363_SNP [dm3] 3R_17646641_SNP [dm6]	C	A	4.136e^-4	0.795	DOWNSTREAM tRNA:CR31578 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	14480577	3L_14480577_SNP [dm3] 3L_14487477_SNP [dm6]	G	C	4.141e^-4	0.795	INTRON bbg
X	16791502	X_16791502_SNP [dm3] X_16897469_SNP [dm6]	T	A	4.164e^-4	0.795	UPSTREAM CG33252 INTERGENIC
2L	7339363	2L_7339363_SNP [dm3] 2L_7339363_SNP [dm6]	G	C	4.169e^-4	0.795	INTRON Wnt6
3R	10365362	3R_10365362_SNP [dm3] 3R_14539640_SNP [dm6]	G	A	4.170e^-4	0.795	INTRON Pde6
2R	9149471	2R_9149471_SNP [dm3] 2R_13261966_SNP [dm6]	C	A	4.174e^-4	0.795	UPSTREAM CG42319 INTRON CG42319
3L	17239734	3L_17239734_SNP [dm3] 3L_17246634_SNP [dm6]	G	C	4.188e^-4	0.795	INTRON CR43870
3L	12605965	3L_12605965_SNP [dm3] 3L_12612865_SNP [dm6]	A	G	4.196e^-4	0.795	INTRON caup
3L	11062628	3L_11062628_SNP [dm3] 3L_11069528_SNP [dm6]	A	G	4.214e^-4	0.795	SYNONYMOUS_CODING CG6310 UPSTREAM Mocs1 DOWNSTREAM SuUR & 1 other
3L	16356772	3L_16356772_SNP [dm3] 3L_16363672_SNP [dm6]	T	C	4.214e^-4	0.795	SYNONYMOUS_CODING Cpr72Ea
3L	11764649	3L_11764649_SNP [dm3] 3L_11771549_SNP [dm6]	A	T	4.220e^-4	0.795	NON_SYNONYMOUS_CODING Muc68D
2R	9930183	2R_9930183_SNP [dm3] 2R_14042678_SNP [dm6]	A	T	4.231e^-4	0.795	INTRON mam	TF binding site BDTNP1_TFBS_dl
2L	10704568	2L_10704568_SNP [dm3] 2L_10704568_SNP [dm6]	A	G	4.234e^-4	0.795	SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site mE1_TFBS_chinmo
3L	11629082	3L_11629082_INS [dm3] 3L_11635982_INS [dm6]	A	AA	4.237e^-4	0.795	INTRON CG32091
3L	11922222	3L_11922222_SNP [dm3] 3L_11929122_SNP [dm6]	A	G	4.239e^-4	0.795	INTRON CG44837 & 1 other
2L	19854015	2L_19854015_SNP [dm3] 2L_19854015_SNP [dm6]	G	A	4.242e^-4	0.795	INTRON sick
X	18694403	X_18694403_SNP [dm3] X_18800370_SNP [dm6]	G	A	4.258e^-4	0.795	INTRON Pk17E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6839618	3L_6839618_SNP [dm3] 3L_6846518_SNP [dm6]	A	T	4.263e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	6839619	3L_6839619_SNP [dm3] 3L_6846519_SNP [dm6]	T	G	4.263e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	6839628	3L_6839628_SNP [dm3] 3L_6846528_SNP [dm6]	A	G	4.263e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	3276675	2L_3276675_SNP [dm3] 2L_3276675_SNP [dm6]	G	A	4.267e^-4	0.795	SYNONYMOUS_CODING CG3332	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11781210	3R_11781210_INS [dm3] 3R_15955488_INS [dm6]	T	TCT	4.267e^-4	0.795	INTRON Sap47
3R	8588798	3R_8588798_SNP [dm3] 3R_12763076_SNP [dm6]	T	G	4.268e^-4	0.795	INTRON beat-Vc
2L	22254890	2L_22254890_SNP [dm3] 2L_22254890_SNP [dm6]	G	T	4.277e^-4	0.795	INTRON Tif-IA
3L	11101095	3L_11101095_SNP [dm3] 3L_11107995_SNP [dm6]	T	A	4.285e^-4	0.795	UPSTREAM CG12522 & 1 other DOWNSTREAM CG34012 INTERGENIC
3L	14556898	3L_14556898_SNP [dm3] 3L_14563798_SNP [dm6]	G	A	4.286e^-4	0.795	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	19974108	2L_19974108_SNP [dm3] 2L_19974108_SNP [dm6]	G	T	4.298e^-4	0.795	INTRON CG43861
X	5371794	X_5371794_SNP [dm3] X_5477761_SNP [dm6]	A	C	4.310e^-4	0.795	INTRON SPR
3L	5615665	3L_5615665_SNP [dm3] 3L_5622565_SNP [dm6]	T	C	4.312e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	9489982	2L_9489982_SNP [dm3] 2L_9489982_SNP [dm6]	C	A	4.330e^-4	0.795	INTERGENIC
3R	19035976	3R_19035976_SNP [dm3] 3R_23210254_SNP [dm6]	C	T	4.333e^-4	0.795	INTRON cnc
2L	22159931	2L_22159931_SNP [dm3] 2L_22159931_SNP [dm6]	A	G	4.334e^-4	0.795	UTR_3_PRIME CG42748 DOWNSTREAM CG42748 INTRON CG42748
3L	5705590	3L_5705590_SNP [dm3] 3L_5712490_SNP [dm6]	A	G	4.347e^-4	0.795	UPSTREAM CG44521 INTRON sif	TF binding site mE1_TFBS_chinmo
2L	13910746	2L_13910746_SNP [dm3] 2L_13910746_SNP [dm6]	C	T	4.359e^-4	0.795	SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad
2L	9431224	2L_9431224_SNP [dm3] 2L_9431224_SNP [dm6]	A	C	4.366e^-4	0.795	UPSTREAM scat & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20558990	X_20558990_SNP [dm3] X_20687963_SNP [dm6]	G	A	4.370e^-4	0.795	DOWNSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	10913502	2L_10913502_SNP [dm3] 2L_10913502_SNP [dm6]	A	G	4.372e^-4	0.795	INTERGENIC
3R	2441023	3R_2441023_DEL [dm3] 3R_6615301_DEL [dm6]	AAG	A	4.374e^-4	0.795	INTERGENIC
2R	6012741	2R_6012741_SNP [dm3] 2R_10125236_SNP [dm6]	A	G	4.378e^-4	0.795	UTR_5_PRIME gem UPSTREAM gem	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6013779	2R_6013779_SNP [dm3] 2R_10126274_SNP [dm6]	A	G	4.378e^-4	0.795	START_GAINED gem UTR_5_PRIME gem	TF binding site mE1_TFBS_Trl
2R	16578560	2R_16578560_SNP [dm3] 2R_20691055_SNP [dm6]	T	A	4.386e^-4	0.795	UPSTREAM CR44659 INTERGENIC
2R	19733028	2R_19733028_SNP [dm3] 2R_23845505_SNP [dm6]	T	C	4.394e^-4	0.795	UPSTREAM Snap29 INTRON CG5554	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26618205	3R_26618205_SNP [dm3] 3R_30792483_SNP [dm6]	C	T	4.399e^-4	0.795	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
3L	11617856	3L_11617856_SNP [dm3] 3L_11624756_SNP [dm6]	T	G	4.401e^-4	0.795	SYNONYMOUS_CODING CG6083 UPSTREAM CG6084
X	14511435	X_14511435_SNP [dm3] X_14617402_SNP [dm6]	A	T	4.401e^-4	0.795	INTRON NetA
3R	3793072	3R_3793072_SNP [dm3] 3R_7967350_SNP [dm6]	A	T	4.405e^-4	0.795	UTR_5_PRIME dsx	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	3793115	3R_3793115_SNP [dm3] 3R_7967393_SNP [dm6]	A	C	4.405e^-4	0.795	START_GAINED dsx UTR_5_PRIME dsx	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	7693055	3L_7693055_SNP [dm3] 3L_7699955_SNP [dm6]	C	A	4.407e^-4	0.795	SYNONYMOUS_CODING Ank2 INTRON CG32373
2R	16188462	2R_16188462_SNP [dm3] 2R_20300957_SNP [dm6]	A	T	4.410e^-4	0.795	INTERGENIC
X	7960954	X_7960954_SNP [dm3] X_8066921_SNP [dm6]	G	A	4.415e^-4	0.795	INTRON mys
3L	13591134	3L_13591134_SNP [dm3] 3L_13598034_SNP [dm6]	A	G	4.434e^-4	0.795	INTRON bru-3
2L	6391073	2L_6391073_SNP [dm3] 2L_6391073_SNP [dm6]	T	C	4.436e^-4	0.795	INTRON CG42368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3556366	2L_3556366_SNP [dm3] 2L_3556366_SNP [dm6]	A	G	4.443e^-4	0.795	INTERGENIC
3L	10315428	3L_10315428_SNP [dm3] 3L_10322328_SNP [dm6]	C	A	4.447e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	9859260	3L_9859260_SNP [dm3] 3L_9866160_SNP [dm6]	C	T	4.456e^-4	0.795	INTRON CG8108
2R	10368451	2R_10368451_SNP [dm3] 2R_14480946_SNP [dm6]	A	T	4.460e^-4	0.795	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10368493	2R_10368493_SNP [dm3] 2R_14480988_SNP [dm6]	T	A	4.460e^-4	0.795	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14396998	3R_14396998_INS [dm3] 3R_18571276_INS [dm6]	T	TT	4.462e^-4	0.795	INTERGENIC
3R	24652689	3R_24652689_SNP [dm3] 3R_28826967_SNP [dm6]	G	A	4.467e^-4	0.795	SYNONYMOUS_CODING WASp
2R	16018987	2R_16018987_SNP [dm3] 2R_20131482_SNP [dm6]	G	T	4.475e^-4	0.795	INTERGENIC
2L	3388309	2L_3388309_DEL [dm3] 2L_3388309_DEL [dm6]	AATG	A	4.482e^-4	0.795	UPSTREAM Sfp23F INTRON CG42460
2L	19974125	2L_19974125_SNP [dm3] 2L_19974125_SNP [dm6]	G	A	4.483e^-4	0.795	INTRON CG43861
3R	19043705	3R_19043705_SNP [dm3] 3R_23217983_SNP [dm6]	T	C	4.484e^-4	0.795	NON_SYNONYMOUS_CODING cnc INTRON cnc	TF binding site mE1_TFBS_chinmo
3R	27142002	3R_27142002_SNP [dm3] 3R_31316280_SNP [dm6]	A	G	4.494e^-4	0.795	INTRON CG34347
3R	27142004	3R_27142004_SNP [dm3] 3R_31316282_SNP [dm6]	T	C	4.494e^-4	0.795	INTRON CG34347
2R	3056357	2R_3056357_SNP [dm3] 2R_7168852_SNP [dm6]	C	G	4.496e^-4	0.795	INTRON pk
X	13701011	X_13701011_SNP [dm3] X_13806978_SNP [dm6]	G	T	4.500e^-4	0.795	UTR_3_PRIME inaE INTRON inaE	TF binding site BDTNP1_TFBS_dl
3L	4304354	3L_4304354_DEL [dm3] 3L_4304354_DEL [dm6]	CC	C	4.502e^-4	0.795	INTRON dyl
3L	4304362	3L_4304362_SNP [dm3] 3L_4304362_SNP [dm6]	G	A	4.502e^-4	0.795	INTRON dyl
3R	26644444	3R_26644444_SNP [dm3] 3R_30818722_SNP [dm6]	G	A	4.503e^-4	0.795	INTRON cindr	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
3L	12989036	3L_12989036_SNP [dm3] 3L_12995936_SNP [dm6]	G	A	4.508e^-4	0.795	SYNONYMOUS_CODING CG11262
2L	17235570	2L_17235570_SNP [dm3] 2L_17235570_SNP [dm6]	T	C	4.511e^-4	0.795	INTRON beat-IIIc
3L	11045313	3L_11045313_DEL [dm3] 3L_11052213_DEL [dm6]	TGTC	AAA	4.521e^-4	0.795	UPSTREAM CG43693 INTERGENIC
2L	9424663	2L_9424663_SNP [dm3] 2L_9424663_SNP [dm6]	A	T	4.522e^-4	0.795	SYNONYMOUS_CODING Mco1	TF binding site mE1_TFBS_sens
3R	19041003	3R_19041003_SNP [dm3] 3R_23215281_SNP [dm6]	T	A	4.528e^-4	0.795	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	19041014	3R_19041014_SNP [dm3] 3R_23215292_SNP [dm6]	C	G	4.528e^-4	0.795	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	19041070	3R_19041070_SNP [dm3] 3R_23215348_SNP [dm6]	T	A	4.528e^-4	0.795	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	19041076	3R_19041076_INS [dm3] 3R_23215354_INS [dm6]	T	TAT	4.528e^-4	0.795	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	20198450	3R_20198450_SNP [dm3] 3R_24372728_SNP [dm6]	T	A	4.539e^-4	0.795	SYNONYMOUS_CODING CG17782 DOWNSTREAM CG17781	TF binding site mE1_TFBS_chinmo
2R	3205012	2R_3205012_SNP [dm3] 2R_7317507_SNP [dm6]	G	A	4.539e^-4	0.795	DOWNSTREAM Dscam1 INTERGENIC
3R	9955988	3R_9955988_SNP [dm3] 3R_14130266_SNP [dm6]	A	G	4.540e^-4	0.795	DOWNSTREAM CG14356 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	19024797	2R_19024797_SNP [dm3] 2R_23137274_SNP [dm6]	C	T	4.542e^-4	0.795	INTERGENIC
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	4.542e^-4	0.795	INTERGENIC
X	9167359	X_9167359_SNP [dm3] X_9273326_SNP [dm6]	T	A	4.544e^-4	0.795	UPSTREAM CG16892 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	9428509	2L_9428509_SNP [dm3] 2L_9428509_SNP [dm6]	C	A	4.547e^-4	0.795	UTR_3_PRIME CG42847 DOWNSTREAM FucTB & 1 other
3L	12707392	3L_12707392_SNP [dm3] 3L_12714292_SNP [dm6]	A	T	4.554e^-4	0.795	INTERGENIC
3R	3152514	3R_3152514_DEL [dm3] 3R_7326792_DEL [dm6]	ACTCA	A	4.560e^-4	0.795	DOWNSTREAM CG44335 EXON CR44336	TF binding site mE1_TFBS_cad
3L	8486148	3L_8486148_SNP [dm3] 3L_8493048_SNP [dm6]	C	G	4.568e^-4	0.795	INTRON CG43163	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11525805	3L_11525805_SNP [dm3] 3L_11532705_SNP [dm6]	G	A	4.571e^-4	0.795	INTRON Mob2
3L	14188795	3L_14188795_SNP [dm3] 3L_14195695_SNP [dm6]	A	T	4.571e^-4	0.795	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	14188828	3L_14188828_SNP [dm3] 3L_14195728_SNP [dm6]	T	G	4.571e^-4	0.795	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	4349879	3R_4349879_SNP [dm3] 3R_8524157_SNP [dm6]	T	A	4.571e^-4	0.795	UTR_5_PRIME CG31259 DOWNSTREAM CG31454
3L	16734398	3L_16734398_SNP [dm3] 3L_16741298_SNP [dm6]	T	A	4.574e^-4	0.795	INTERGENIC
3L	2637369	3L_2637369_SNP [dm3] 3L_2637369_SNP [dm6]	T	C	4.580e^-4	0.795	SYNONYMOUS_CODING MEP-1 UTR_3_PRIME CG42245	TF binding site mE1_TFBS_cad
3L	11597825	3L_11597825_SNP [dm3] 3L_11604725_SNP [dm6]	G	T	4.587e^-4	0.795	UTR_3_PRIME CG7368 DOWNSTREAM CG6091
2R	17678455	2R_17678455_SNP [dm3] 2R_21790950_SNP [dm6]	T	G	4.588e^-4	0.795	NON_SYNONYMOUS_CODING lox2
2L	19439624	2L_19439624_SNP [dm3] 2L_19439624_SNP [dm6]	A	T	4.591e^-4	0.795	UPSTREAM CG10237 INTRON CG10237	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20702984	2L_20702984_SNP [dm3] 2L_20702984_SNP [dm6]	A	G	4.591e^-4	0.795	INTRON Hr38
2R	17676151	2R_17676151_SNP [dm3] 2R_21788646_SNP [dm6]	C	T	4.592e^-4	0.795	DOWNSTREAM lox2 INTERGENIC
X	14927599	X_14927599_SNP [dm3] X_15033566_SNP [dm6]	G	C	4.599e^-4	0.795	INTRON hiw & 1 other
2R	20722957	2R_20722957_SNP [dm3] 2R_24835434_SNP [dm6]	C	T	4.606e^-4	0.795	UTR_3_PRIME Dll DOWNSTREAM Dll
2L	19949326	2L_19949326_SNP [dm3] 2L_19949326_SNP [dm6]	T	C	4.610e^-4	0.795	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17760863	2R_17760863_SNP [dm3] 2R_21873358_SNP [dm6]	T	C	4.619e^-4	0.795	INTRON Fili
3R	9664196	3R_9664196_SNP [dm3] 3R_13838474_SNP [dm6]	C	T	4.619e^-4	0.795	UTR_3_PRIME CG31495 UPSTREAM Nsf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11961338	2R_11961338_SNP [dm3] 2R_16073833_SNP [dm6]	T	C	4.625e^-4	0.795	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	962094	2L_962094_SNP [dm3] 2L_962094_SNP [dm6]	G	A	4.636e^-4	0.795	INTERGENIC
X	8731990	X_8731990_SNP [dm3] X_8837957_SNP [dm6]	C	T	4.645e^-4	0.795	UPSTREAM CG12075 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	13343445	X_13343445_SNP [dm3] X_13449412_SNP [dm6]	C	T	4.647e^-4	0.795	INTRON Neto
X	20558998	X_20558998_SNP [dm3] X_20687971_SNP [dm6]	A	T	4.651e^-4	0.795	DOWNSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	11750299	3L_11750299_INS [dm3] 3L_11757199_INS [dm6]	G	GG	4.653e^-4	0.795	INTRON CG6024
2L	7371585	2L_7371585_SNP [dm3] 2L_7371585_SNP [dm6]	C	A	4.658e^-4	0.795	INTRON Wnt10
2R	17260895	2R_17260895_SNP [dm3] 2R_21373390_SNP [dm6]	T	C	4.661e^-4	0.795	INTRON cv-2	TF binding site BDTNP1_TFBS_twi
X	4375993	X_4375993_SNP [dm3] X_4481960_SNP [dm6]	A	G	4.668e^-4	0.795	INTRON CR32773 & 1 other
2L	14936854	2L_14936854_SNP [dm3] 2L_14936854_SNP [dm6]	A	T	4.670e^-4	0.795	INTRON CG42313
2L	13773361	2L_13773361_SNP [dm3] 2L_13773361_SNP [dm6]	A	T	4.686e^-4	0.795	UPSTREAM CG43376 DOWNSTREAM CG9008 INTRON TM9SF4
2L	17576125	2L_17576125_SNP [dm3] 2L_17576125_SNP [dm6]	A	C	4.686e^-4	0.795	UPSTREAM CR45358 INTERGENIC
2L	12423696	2L_12423696_SNP [dm3] 2L_12423696_SNP [dm6]	A	T	4.698e^-4	0.795	UPSTREAM vir-1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	20558976	X_20558976_SNP [dm3] X_20687949_SNP [dm6]	C	A	4.701e^-4	0.795	DOWNSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	20558982	X_20558982_SNP [dm3] X_20687955_SNP [dm6]	A	T	4.701e^-4	0.795	DOWNSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	17760427	2R_17760427_DEL [dm3] 2R_21872922_DEL [dm6]	AA	A	4.723e^-4	0.795	INTRON Fili	TF binding site mE1_TFBS_D
2R	17760464	2R_17760464_SNP [dm3] 2R_21872959_SNP [dm6]	T	C	4.723e^-4	0.795	INTRON Fili	TF binding site mE1_TFBS_D
X	16079430	X_16079430_SNP [dm3] X_16185397_SNP [dm6]	A	T	4.725e^-4	0.795	INTERGENIC
3R	13145823	3R_13145823_SNP [dm3] 3R_17320101_SNP [dm6]	T	C	4.727e^-4	0.795	UTR_3_PRIME beat-IIa
2L	10181600	2L_10181600_SNP [dm3] 2L_10181600_SNP [dm6]	C	G	4.741e^-4	0.795	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv transposable element FlyBase
2L	5412909	2L_5412909_SNP [dm3] 2L_5412909_SNP [dm6]	C	A	4.749e^-4	0.795	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19904035	2R_19904035_SNP [dm3] 2R_24016512_SNP [dm6]	A	G	4.750e^-4	0.795	SYNONYMOUS_CODING CG4324 UPSTREAM CG3121	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20605740	2R_20605740_SNP [dm3] 2R_24718217_SNP [dm6]	G	C	4.758e^-4	0.795	INTRON Mid1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	881623	2L_881623_DEL [dm3] 2L_881623_DEL [dm6]	TGT	T	4.764e^-4	0.795	INTRON CG15824	TF binding site mE1_TFBS_cad
2L	13771105	2L_13771105_SNP [dm3] 2L_13771105_SNP [dm6]	T	C	4.772e^-4	0.795	UTR_5_PRIME TM9SF4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	22834618	2L_22834618_SNP [dm3] 2L_22941886_SNP [dm6]	G	T	4.772e^-4	0.795	UTR_3_PRIME lt
2L	22859171	2L_22859171_SNP [dm3] 2L_22966439_SNP [dm6]	T	C	4.772e^-4	0.795	INTERGENIC
2L	22865461	2L_22865461_SNP [dm3] 2L_22972729_SNP [dm6]	C	G	4.772e^-4	0.795	INTERGENIC
2L	22868138	2L_22868138_SNP [dm3] 2L_22975406_SNP [dm6]	T	C	4.772e^-4	0.795	INTERGENIC
2L	22869484	2L_22869484_SNP [dm3] 2L_22976752_SNP [dm6]	C	A	4.772e^-4	0.795	INTERGENIC
2L	22896491	2L_22896491_SNP [dm3] 2L_23003759_SNP [dm6]	T	A	4.772e^-4	0.795	NON_SYNONYMOUS_CODING Cht3
2L	22916523	2L_22916523_SNP [dm3] 2L_23023791_SNP [dm6]	T	A	4.772e^-4	0.795	INTRON Cht3
2L	22916832	2L_22916832_DEL [dm3] 2L_23024100_DEL [dm6]	CCCGTTAC	C	4.772e^-4	0.795	INTRON Cht3
2L	22931535	2L_22931535_SNP [dm3] 2L_23038803_SNP [dm6]	C	G	4.772e^-4	0.795	INTERGENIC
2L	22934133	2L_22934133_SNP [dm3] 2L_23041401_SNP [dm6]	G	A	4.772e^-4	0.795	INTERGENIC
2L	22934338	2L_22934338_SNP [dm3] 2L_23041606_SNP [dm6]	G	A	4.772e^-4	0.795	INTERGENIC
2L	22939856	2L_22939856_DEL [dm3] 2L_23047124_DEL [dm6]	GG	G	4.772e^-4	0.795	INTERGENIC
2L	22947884	2L_22947884_SNP [dm3] 2L_23055152_SNP [dm6]	T	C	4.772e^-4	0.795	INTERGENIC
2L	22962981	2L_22962981_SNP [dm3] 2L_23070249_SNP [dm6]	C	T	4.772e^-4	0.795	EXON CR43242	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	22972953	2L_22972953_SNP [dm3] 2L_23080221_SNP [dm6]	G	A	4.772e^-4	0.795	INTERGENIC
2L	22974338	2L_22974338_SNP [dm3] 2L_23081606_SNP [dm6]	G	A	4.772e^-4	0.795	INTERGENIC
3L	9010877	3L_9010877_SNP [dm3] 3L_9017777_SNP [dm6]	G	C	4.772e^-4	0.795	INTRON Doc2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	8762290	3R_8762290_INS [dm3] 3R_12936568_INS [dm6]	A	AGGA	4.772e^-4	0.795	INTERGENIC
3R	24894781	3R_24894781_SNP [dm3] 3R_29069059_SNP [dm6]	T	C	4.776e^-4	0.795	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	19449646	2R_19449646_SNP [dm3] 2R_23562123_SNP [dm6]	G	C	4.782e^-4	0.795	NON_SYNONYMOUS_CODING Pi3K59F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14578154	3L_14578154_SNP [dm3] 3L_14585054_SNP [dm6]	G	A	4.783e^-4	0.795	INTRON HGTX	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23339779	3R_23339779_SNP [dm3] 3R_27514057_SNP [dm6]	A	G	4.801e^-4	0.795	INTERGENIC
2L	13743754	2L_13743754_SNP [dm3] 2L_13743754_SNP [dm6]	A	G	4.805e^-4	0.795	INTERGENIC
3L	4406785	3L_4406785_SNP [dm3] 3L_4406785_SNP [dm6]	C	T	4.808e^-4	0.795	UPSTREAM DOR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	10082129	2L_10082129_SNP [dm3] 2L_10082129_SNP [dm6]	A	T	4.815e^-4	0.795	INTRON CG44153	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21081440	X_21081440_SNP [dm3] X_21210413_SNP [dm6]	A	G	4.815e^-4	0.795	INTRON CG32521
2L	22919048	2L_22919048_SNP [dm3] 2L_23026316_SNP [dm6]	T	G	4.821e^-4	0.795	UPSTREAM Cht3 INTERGENIC
X	8424623	X_8424623_SNP [dm3] X_8530590_SNP [dm6]	T	C	4.821e^-4	0.795	UPSTREAM PIP82 INTRON Nrg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26259472	3R_26259472_SNP [dm3] 3R_30433750_SNP [dm6]	C	T	4.835e^-4	0.795	INTRON CG15534
3L	11648034	3L_11648034_SNP [dm3] 3L_11654934_SNP [dm6]	T	C	4.835e^-4	0.795	INTRON CG32085
3L	17217720	3L_17217720_SNP [dm3] 3L_17224620_SNP [dm6]	A	G	4.858e^-4	0.795	INTRON Rbp6
2R	6593493	2R_6593493_SNP [dm3] 2R_10705988_SNP [dm6]	A	G	4.867e^-4	0.795	UTR_5_PRIME stan INTRON stan
X	4471293	X_4471293_INS [dm3] X_4577260_INS [dm6]	A	AAA	4.868e^-4	0.795	INTRON CR32773
X	18255489	X_18255489_SNP [dm3] X_18361456_SNP [dm6]	G	A	4.887e^-4	0.795	SYNONYMOUS_CODING CG6106
2L	19569580	2L_19569580_SNP [dm3] 2L_19569580_SNP [dm6]	A	G	4.890e^-4	0.795	UPSTREAM mir-2a-2 DOWNSTREAM mir-2a-1 & 1 other INTRON spi
2L	3196636	2L_3196636_SNP [dm3] 2L_3196636_SNP [dm6]	A	G	4.890e^-4	0.795	INTRON CG34393
3L	4387597	3L_4387597_SNP [dm3] 3L_4387597_SNP [dm6]	A	G	4.900e^-4	0.795	INTRON slow
2R	10820343	2R_10820343_DEL [dm3] 2R_14932838_DEL [dm6]	CAC	C	4.907e^-4	0.795	UPSTREAM CG12853 INTRON CG10253
2L	3457880	2L_3457880_SNP [dm3] 2L_3457880_SNP [dm6]	T	A	4.909e^-4	0.795	SYNONYMOUS_CODING Sec5 UPSTREAM Cog3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	13342179	3L_13342179_SNP [dm3] 3L_13349079_SNP [dm6]	C	T	4.927e^-4	0.795	UPSTREAM CG17687 INTERGENIC
X	4376049	X_4376049_SNP [dm3] X_4482016_SNP [dm6]	G	A	4.929e^-4	0.795	INTRON CR32773 & 1 other
2R	15280902	2R_15280902_SNP [dm3] 2R_19393397_SNP [dm6]	C	T	4.936e^-4	0.795	SYNONYMOUS_CODING SdhA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	259094	2L_259094_SNP [dm3] 2L_259094_SNP [dm6]	C	T	4.939e^-4	0.795	DOWNSTREAM CG17075 INTRON CG3645
3R	6048834	3R_6048834_SNP [dm3] 3R_10223112_SNP [dm6]	A	T	4.950e^-4	0.795	SPLICE_SITE_REGION CG12420 DOWNSTREAM CG12817 & 1 other INTRON CG12420	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6050313	3R_6050313_SNP [dm3] 3R_10224591_SNP [dm6]	T	C	4.950e^-4	0.795	SYNONYMOUS_CODING CG12817 UPSTREAM CG34107 DOWNSTREAM CG12420	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7643352	2L_7643352_SNP [dm3] 2L_7643352_SNP [dm6]	A	C	4.954e^-4	0.795	UTR_3_PRIME Slob DOWNSTREAM Slob
2L	3960894	2L_3960894_SNP [dm3] 2L_3960894_SNP [dm6]	G	A	4.957e^-4	0.795	INTRON fred
2L	12730685	2L_12730685_SNP [dm3] 2L_12730685_SNP [dm6]	G	C	4.969e^-4	0.795	INTRON MRP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8588897	3R_8588897_DEL [dm3] 3R_12763175_DEL [dm6]	AAATGTGCTTCATATTTATA...	A	4.975e^-4	0.795	INTRON beat-Vc
X	11320952	X_11320952_SNP [dm3] X_11426919_SNP [dm6]	T	C	4.976e^-4	0.795	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4874046	2L_4874046_SNP [dm3] 2L_4874046_SNP [dm6]	T	C	4.978e^-4	0.795	INTRON pog
3R	22141342	3R_22141342_SNP [dm3] 3R_26315620_SNP [dm6]	G	A	4.988e^-4	0.795	INTERGENIC
2R	16400527	2R_16400527_SNP [dm3] 2R_20513022_SNP [dm6]	G	A	4.991e^-4	0.795	DOWNSTREAM CR44649 INTRON CG13426
3R	19038237	3R_19038237_DEL [dm3] 3R_23212515_DEL [dm6]	AA	C	4.992e^-4	0.795	INTRON cnc	TF binding site BDTNP1_TFBS_dl
3R	23338954	3R_23338954_SNP [dm3] 3R_27513232_SNP [dm6]	T	C	4.994e^-4	0.795	INTERGENIC
2L	1677679	2L_1677679_SNP [dm3] 2L_1677679_SNP [dm6]	G	A	5.020e^-4	0.795	INTRON chinmo
3L	18849034	3L_18849034_SNP [dm3] 3L_18855934_SNP [dm6]	T	A	5.026e^-4	0.795	UPSTREAM CR45388 INTERGENIC
2R	9128381	2R_9128381_SNP [dm3] 2R_13240876_SNP [dm6]	G	T	5.031e^-4	0.795	UTR_3_PRIME GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10082494	2L_10082494_SNP [dm3] 2L_10082494_SNP [dm6]	A	G	5.033e^-4	0.795	INTRON CG44153
X	13624147	X_13624147_SNP [dm3] X_13730114_SNP [dm6]	A	G	5.037e^-4	0.795	SYNONYMOUS_CODING g	TF binding site mE1_TFBS_cad mE1_TFBS_sens

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.441e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	2.8182	0.0932

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1672 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	7998017	X_7998017_SNP [dm3] X_8103984_SNP [dm6]	G	A	2.640e^-6	0.74	INTRON Gclc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11649711	3L_11649711_SNP [dm3] 3L_11656611_SNP [dm6]	T	A	7.725e^-6	0.74	UPSTREAM mir-274 INTRON CG32085
X	10872181	X_10872181_SNP [dm3] X_10978148_SNP [dm6]	G	A	1.001e^-5	0.74	INTRON CG42339
3L	5192306	3L_5192306_SNP [dm3] 3L_5199206_SNP [dm6]	G	A	1.008e^-5	0.74	INTRON shep
3L	13310278	3L_13310278_SNP [dm3] 3L_13317178_SNP [dm6]	C	G	1.060e^-5	0.74	INTERGENIC
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	1.060e^-5	0.74	INTERGENIC
X	7083128	X_7083128_SNP [dm3] X_7189095_SNP [dm6]	A	T	1.110e^-5	0.74	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	3380094	2L_3380094_SNP [dm3] 2L_3380094_SNP [dm6]	C	A	1.151e^-5	0.74	INTERGENIC
2L	3380110	2L_3380110_SNP [dm3] 2L_3380110_SNP [dm6]	T	A	1.151e^-5	0.74	INTERGENIC
2R	15591974	2R_15591974_DEL [dm3] 2R_19704469_DEL [dm6]	ATATA	T	1.297e^-5	0.74	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
X	8423297	X_8423297_SNP [dm3] X_8529264_SNP [dm6]	C	A	1.378e^-5	0.74	INTRON Nrg & 1 other	TF binding site mE1_TFBS_cad
X	6159384	X_6159384_SNP [dm3] X_6265351_SNP [dm6]	C	A	1.416e^-5	0.74	INTRON schlank	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11649339	3L_11649339_SNP [dm3] 3L_11656239_SNP [dm6]	A	T	1.451e^-5	0.74	UPSTREAM mir-274 INTRON CG32085
3R	5267763	3R_5267763_SNP [dm3] 3R_9442041_SNP [dm6]	T	A	1.509e^-5	0.74	INTRON ps
3L	5192292	3L_5192292_SNP [dm3] 3L_5199192_SNP [dm6]	T	C	1.679e^-5	0.74	INTRON shep
2R	16998554	2R_16998554_SNP [dm3] 2R_21111049_SNP [dm6]	A	T	1.763e^-5	0.74	INTRON ktub
X	7082997	X_7082997_SNP [dm3] X_7188964_SNP [dm6]	T	A	1.793e^-5	0.74	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	19745686	2R_19745686_SNP [dm3] 2R_23858163_SNP [dm6]	G	C	1.877e^-5	0.74	SYNONYMOUS_CODING bgcn DOWNSTREAM TBPH	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	9421316	X_9421316_SNP [dm3] X_9527283_SNP [dm6]	A	C	1.901e^-5	0.74	INTRON CG32700
3R	14739112	3R_14739112_SNP [dm3] 3R_18913390_SNP [dm6]	A	C	1.959e^-5	0.74	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3L	11854074	3L_11854074_SNP [dm3] 3L_11860974_SNP [dm6]	G	C	1.983e^-5	0.74	INTRON CG44837
2R	15592065	2R_15592065_SNP [dm3] 2R_19704560_SNP [dm6]	T	G	2.143e^-5	0.74	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
3R	3790477	3R_3790477_SNP [dm3] 3R_7964755_SNP [dm6]	G	A	2.219e^-5	0.74	INTRON dsx
3R	3790480	3R_3790480_SNP [dm3] 3R_7964758_SNP [dm6]	G	A	2.219e^-5	0.74	INTRON dsx
X	8423218	X_8423218_SNP [dm3] X_8529185_SNP [dm6]	T	G	2.231e^-5	0.74	INTRON Nrg & 1 other	TF binding site mE1_TFBS_cad
3L	12447176	3L_12447176_SNP [dm3] 3L_12454076_SNP [dm6]	G	T	2.315e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	12447179	3L_12447179_SNP [dm3] 3L_12454079_SNP [dm6]	T	A	2.315e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	5192198	3L_5192198_SNP [dm3] 3L_5199098_SNP [dm6]	G	A	2.333e^-5	0.74	INTRON shep
X	10872188	X_10872188_SNP [dm3] X_10978155_SNP [dm6]	T	C	2.531e^-5	0.74	INTRON CG42339
2R	19745746	2R_19745746_SNP [dm3] 2R_23858223_SNP [dm6]	C	T	2.577e^-5	0.74	SYNONYMOUS_CODING bgcn DOWNSTREAM TBPH	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	11923714	2R_11923714_SNP [dm3] 2R_16036209_SNP [dm6]	G	T	2.624e^-5	0.74	INTRON SP2353
2L	7389894	2L_7389894_SNP [dm3] 2L_7389894_SNP [dm6]	G	T	2.667e^-5	0.74	SYNONYMOUS_CODING gudu
3R	12793620	3R_12793620_SNP [dm3] 3R_16967898_SNP [dm6]	A	C	2.751e^-5	0.74	INTRON Abd-B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12527304	2L_12527304_SNP [dm3] 2L_12527304_SNP [dm6]	G	T	3.145e^-5	0.74	INTRON bun
3L	11545080	3L_11545080_SNP [dm3] 3L_11551980_SNP [dm6]	A	C	3.170e^-5	0.74	DOWNSTREAM mir-4968 INTRON Mob2	TF binding site BDTNP1_TFBS_dl
X	21931868	X_21931868_SNP [dm3] X_22530032_SNP [dm6]	C	T	3.311e^-5	0.74	UTR_5_PRIME S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	22328190	2L_22328190_SNP [dm3] 2L_22328190_SNP [dm6]	A	T	3.346e^-5	0.74	INTRON CG17018	transposable element FlyBase
2R	18361679	2R_18361679_SNP [dm3] 2R_22474174_SNP [dm6]	C	T	3.523e^-5	0.74	INTRON CG45062	TF binding site mE1_TFBS_cad
2R	19024962	2R_19024962_INS [dm3] 2R_23137439_INS [dm6]	A	AA	3.792e^-5	0.74	INTERGENIC
3L	16658080	3L_16658080_DEL [dm3] 3L_16664980_DEL [dm6]	TT	T	3.801e^-5	0.74	INTRON Galphaf
2L	16013909	2L_16013909_SNP [dm3] 2L_16013909_SNP [dm6]	T	A	3.818e^-5	0.74	INTRON beat-Ic
2L	17457632	2L_17457632_SNP [dm3] 2L_17457632_SNP [dm6]	G	T	3.905e^-5	0.74	SYNONYMOUS_CODING CG18563 INTRON CG5050	TF binding site mE1_TFBS_cad
2L	17457657	2L_17457657_SNP [dm3] 2L_17457657_SNP [dm6]	A	G	3.905e^-5	0.74	NON_SYNONYMOUS_CODING CG18563 INTRON CG5050	TF binding site mE1_TFBS_cad
2R	16831261	2R_16831261_SNP [dm3] 2R_20943756_SNP [dm6]	A	C	4.061e^-5	0.74	UPSTREAM Act57B INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25298904	3R_25298904_SNP [dm3] 3R_29473182_SNP [dm6]	G	A	4.114e^-5	0.74	SYNONYMOUS_CODING Ptp99A
2R	15592066	2R_15592066_SNP [dm3] 2R_19704561_SNP [dm6]	G	T	4.128e^-5	0.74	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
2L	7341261	2L_7341261_INS [dm3] 2L_7341261_INS [dm6]	T	TT	4.242e^-5	0.74	INTRON Wnt6	TF binding site mE1_TFBS_sbb
2L	13877686	2L_13877686_SNP [dm3] 2L_13877686_SNP [dm6]	C	T	4.252e^-5	0.74	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11613699	3L_11613699_SNP [dm3] 3L_11620599_SNP [dm6]	A	T	4.254e^-5	0.74	UTR_3_PRIME CG6084 UPSTREAM Muc68Ca
3L	11062625	3L_11062625_SNP [dm3] 3L_11069525_SNP [dm6]	G	A	4.350e^-5	0.74	SYNONYMOUS_CODING CG6310 DOWNSTREAM SuUR & 1 other
3L	16864698	3L_16864698_SNP [dm3] 3L_16871598_SNP [dm6]	G	T	4.428e^-5	0.74	INTRON Lmpt
3R	10046175	3R_10046175_SNP [dm3] 3R_14220453_SNP [dm6]	T	A	4.588e^-5	0.74	UPSTREAM CG31326 DOWNSTREAM CG33109 INTERGENIC
3R	10046182	3R_10046182_SNP [dm3] 3R_14220460_SNP [dm6]	A	G	4.588e^-5	0.74	UPSTREAM CG31326 DOWNSTREAM CG33109 INTERGENIC
3R	10046184	3R_10046184_SNP [dm3] 3R_14220462_SNP [dm6]	T	A	4.588e^-5	0.74	UPSTREAM CG31326 DOWNSTREAM CG33109 INTERGENIC
3R	10046186	3R_10046186_SNP [dm3] 3R_14220464_SNP [dm6]	A	G	4.588e^-5	0.74	UPSTREAM CG31326 DOWNSTREAM CG33109 INTERGENIC
X	9104267	X_9104267_SNP [dm3] X_9210234_SNP [dm6]	T	C	4.606e^-5	0.74	SYNONYMOUS_CODING CG12119
2R	5234075	2R_5234075_SNP [dm3] 2R_9346570_SNP [dm6]	T	G	4.638e^-5	0.74	SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
3L	10730947	3L_10730947_SNP [dm3] 3L_10737847_SNP [dm6]	C	T	4.775e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	4293464	X_4293464_SNP [dm3] X_4399431_SNP [dm6]	C	G	4.787e^-5	0.74	INTRON CR32773
2L	8766859	2L_8766859_SNP [dm3] 2L_8766859_SNP [dm6]	G	T	4.838e^-5	0.74	NON_SYNONYMOUS_CODING CG9463
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	4.862e^-5	0.74	INTRON CG17839
3R	3543899	3R_3543899_SNP [dm3] 3R_7718177_SNP [dm6]	C	T	4.931e^-5	0.74	INTERGENIC
3L	16699848	3L_16699848_SNP [dm3] 3L_16706748_SNP [dm6]	G	A	5.028e^-5	0.74	DOWNSTREAM CG9692 INTRON Lasp & 1 other
2R	10820287	2R_10820287_SNP [dm3] 2R_14932782_SNP [dm6]	C	T	5.156e^-5	0.74	UPSTREAM CG12853 INTRON CG10253
X	21931315	X_21931315_SNP [dm3] X_22529479_SNP [dm6]	A	G	5.177e^-5	0.74	UPSTREAM S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	25883810	3R_25883810_SNP [dm3] 3R_30058088_SNP [dm6]	C	T	5.194e^-5	0.74	UTR_3_PRIME CG34317 & 1 other UPSTREAM sima	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	15501852	X_15501852_SNP [dm3] X_15607819_SNP [dm6]	T	A	5.199e^-5	0.74	INTRON sog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15501860	X_15501860_SNP [dm3] X_15607827_SNP [dm6]	G	A	5.199e^-5	0.74	INTRON sog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17239706	3L_17239706_SNP [dm3] 3L_17246606_SNP [dm6]	A	G	5.340e^-5	0.74	INTRON CR43870
3R	19043868	3R_19043868_SNP [dm3] 3R_23218146_SNP [dm6]	T	G	5.352e^-5	0.74	SYNONYMOUS_CODING cnc INTRON cnc	TF binding site mE1_TFBS_chinmo
X	19520168	X_19520168_SNP [dm3] X_19626135_SNP [dm6]	G	A	5.366e^-5	0.74	NON_SYNONYMOUS_CODING CG14212 DOWNSTREAM MKP-4 & 1 other	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18248575	3L_18248575_SNP [dm3] 3L_18255475_SNP [dm6]	A	T	5.485e^-5	0.74	INTERGENIC
3L	11062571	3L_11062571_SNP [dm3] 3L_11069471_SNP [dm6]	A	G	5.567e^-5	0.74	SYNONYMOUS_CODING CG6310 DOWNSTREAM SuUR & 1 other
2L	8986584	2L_8986584_SNP [dm3] 2L_8986584_SNP [dm6]	G	A	5.936e^-5	0.74	INTRON rost
X	7319363	X_7319363_SNP [dm3] X_7425330_SNP [dm6]	A	T	6.083e^-5	0.74	UTR_3_PRIME CG32726 UPSTREAM CG15036 DOWNSTREAM CG32726
3L	769191	3L_769191_SNP [dm3] 3L_769191_SNP [dm6]	G	A	6.112e^-5	0.74	UPSTREAM tRNA:CR32480 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	770738	3L_770738_SNP [dm3] 3L_770738_SNP [dm6]	C	T	6.112e^-5	0.74	DOWNSTREAM tRNA:CR32481 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	6.126e^-5	0.74	INTERGENIC
2R	16998407	2R_16998407_SNP [dm3] 2R_21110902_SNP [dm6]	T	C	6.155e^-5	0.74	INTRON ktub
3L	10640601	3L_10640601_SNP [dm3] 3L_10647501_SNP [dm6]	A	G	6.453e^-5	0.74	INTRON CG32066
2R	17678420	2R_17678420_SNP [dm3] 2R_21790915_SNP [dm6]	A	G	6.472e^-5	0.74	SYNONYMOUS_CODING lox2
2L	10795296	2L_10795296_INS [dm3] 2L_10795296_INS [dm6]	T	TTCAT	6.606e^-5	0.74	INTRON CG31869	TF binding site mE1_TFBS_inv
3R	19043961	3R_19043961_SNP [dm3] 3R_23218239_SNP [dm6]	C	T	6.661e^-5	0.74	SYNONYMOUS_CODING cnc INTRON cnc	TF binding site mE1_TFBS_chinmo
2L	10181798	2L_10181798_SNP [dm3] 2L_10181798_SNP [dm6]	A	G	6.884e^-5	0.74	DOWNSTREAM Sur INTERGENIC
3L	10731209	3L_10731209_SNP [dm3] 3L_10738109_SNP [dm6]	C	T	7.006e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	2441023	3R_2441023_DEL [dm3] 3R_6615301_DEL [dm6]	AAG	A	7.201e^-5	0.74	INTERGENIC
3L	3296481	3L_3296481_SNP [dm3] 3L_3296481_SNP [dm6]	G	A	7.266e^-5	0.74	NON_SYNONYMOUS_CODING CG12009	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	11321086	X_11321086_SNP [dm3] X_11427053_SNP [dm6]	T	C	7.355e^-5	0.74	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11062628	3L_11062628_SNP [dm3] 3L_11069528_SNP [dm6]	A	G	7.422e^-5	0.74	SYNONYMOUS_CODING CG6310 UPSTREAM Mocs1 DOWNSTREAM SuUR & 1 other
2R	15592083	2R_15592083_SNP [dm3] 2R_19704578_SNP [dm6]	C	T	7.463e^-5	0.74	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
2R	6568874	2R_6568874_SNP [dm3] 2R_10681369_SNP [dm6]	T	A	7.523e^-5	0.74	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	5412427	2L_5412427_SNP [dm3] 2L_5412427_SNP [dm6]	G	T	7.567e^-5	0.74	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13231337	2L_13231337_SNP [dm3] 2L_13231337_SNP [dm6]	A	G	7.573e^-5	0.74	UPSTREAM Prosalpha6T DOWNSTREAM CG16815 INTERGENIC	TF binding site mE1_TFBS_cad
3L	16357132	3L_16357132_SNP [dm3] 3L_16364032_SNP [dm6]	T	G	7.625e^-5	0.74	UPSTREAM Cpr72Eb DOWNSTREAM Cpr72Ea INTERGENIC
2R	20172293	2R_20172293_SNP [dm3] 2R_24284770_SNP [dm6]	C	T	7.740e^-5	0.74	INTRON nvy
X	11119294	X_11119294_SNP [dm3] X_11225261_SNP [dm6]	A	T	7.811e^-5	0.74	INTRON CG44422
X	11119301	X_11119301_SNP [dm3] X_11225268_SNP [dm6]	T	C	7.811e^-5	0.74	INTRON CG44422
X	11119321	X_11119321_SNP [dm3] X_11225288_SNP [dm6]	T	C	7.811e^-5	0.74	INTRON CG44422
2R	19141324	2R_19141324_SNP [dm3] 2R_23253801_SNP [dm6]	G	A	7.896e^-5	0.74	INTERGENIC
3L	8321056	3L_8321056_INS [dm3] 3L_8327956_INS [dm6]	C	CTC	7.991e^-5	0.74	UTR_3_PRIME CG34461 UPSTREAM CG34462 DOWNSTREAM CG34461	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	8.075e^-5	0.74	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	2673180	3L_2673180_SNP [dm3] 3L_2673180_SNP [dm6]	G	A	8.252e^-5	0.74	SYNONYMOUS_CODING Fife
3L	2673210	3L_2673210_SNP [dm3] 3L_2673210_SNP [dm6]	T	C	8.252e^-5	0.74	SYNONYMOUS_CODING Fife
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	8.555e^-5	0.74	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	9428509	2L_9428509_SNP [dm3] 2L_9428509_SNP [dm6]	C	A	8.569e^-5	0.74	UTR_3_PRIME CG42847 DOWNSTREAM FucTB & 1 other
X	15165990	X_15165990_DEL [dm3] X_15271957_DEL [dm6]	TAC	T	8.639e^-5	0.74	INTRON CG9106
3L	13343644	3L_13343644_SNP [dm3] 3L_13350544_SNP [dm6]	A	G	8.913e^-5	0.74	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7319419	X_7319419_DEL [dm3] X_7425386_DEL [dm6]	TG	T	8.989e^-5	0.74	UTR_3_PRIME CG32726 UPSTREAM CG15036
3R	2741831	3R_2741831_SNP [dm3] 3R_6916109_SNP [dm6]	A	T	9.096e^-5	0.74	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad
3R	2741859	3R_2741859_SNP [dm3] 3R_6916137_SNP [dm6]	G	A	9.096e^-5	0.74	INTRON Antp	TF binding site BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2L	9053262	2L_9053262_SNP [dm3] 2L_9053262_SNP [dm6]	T	A	9.108e^-5	0.74	INTRON CG31708
3R	19043705	3R_19043705_SNP [dm3] 3R_23217983_SNP [dm6]	T	C	9.222e^-5	0.74	NON_SYNONYMOUS_CODING cnc INTRON cnc	TF binding site mE1_TFBS_chinmo
2L	9851017	2L_9851017_SNP [dm3] 2L_9851017_SNP [dm6]	T	G	9.277e^-5	0.74	INTRON nAChRalpha6
2R	15591953	2R_15591953_SNP [dm3] 2R_19704448_SNP [dm6]	C	T	9.311e^-5	0.74	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
2R	2793455	2R_2793455_SNP [dm3] 2R_6905950_SNP [dm6]	T	C	9.342e^-5	0.74	UTR_5_PRIME CG30158	TF binding site mE1_TFBS_chinmo
2R	15877001	2R_15877001_SNP [dm3] 2R_19989496_SNP [dm6]	G	A	9.398e^-5	0.74	INTERGENIC
2L	7387641	2L_7387641_SNP [dm3] 2L_7387641_SNP [dm6]	T	A	9.482e^-5	0.74	UPSTREAM gudu INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	19024797	2R_19024797_SNP [dm3] 2R_23137274_SNP [dm6]	C	T	9.620e^-5	0.74	INTERGENIC
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	9.620e^-5	0.74	INTERGENIC
3R	19038168	3R_19038168_SNP [dm3] 3R_23212446_SNP [dm6]	A	C	9.699e^-5	0.74	INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	21422706	3R_21422706_SNP [dm3] 3R_25596984_SNP [dm6]	C	T	9.750e^-5	0.74	INTRON ymp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11063327	3L_11063327_SNP [dm3] 3L_11070227_SNP [dm6]	T	C	9.954e^-5	0.74	UPSTREAM Mocs1 & 1 other INTERGENIC
3R	9664196	3R_9664196_SNP [dm3] 3R_13838474_SNP [dm6]	C	T	9.959e^-5	0.74	UTR_3_PRIME CG31495 UPSTREAM Nsf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5412902	2L_5412902_SNP [dm3] 2L_5412902_SNP [dm6]	T	C	1.000e^-4	0.74	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20175238	2R_20175238_SNP [dm3] 2R_24287715_SNP [dm6]	A	T	1.005e^-4	0.74	INTRON nvy	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11062735	3L_11062735_SNP [dm3] 3L_11069635_SNP [dm6]	G	T	1.011e^-4	0.74	UPSTREAM Mocs1 DOWNSTREAM SuUR & 1 other INTRON CG6310
X	16344746	X_16344746_SNP [dm3] X_16450713_SNP [dm6]	A	T	1.019e^-4	0.74	INTRON Rbp2
3L	16908911	3L_16908911_SNP [dm3] 3L_16915811_SNP [dm6]	C	T	1.026e^-4	0.74	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	10181577	2L_10181577_SNP [dm3] 2L_10181577_SNP [dm6]	C	A	1.033e^-4	0.74	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv transposable element FlyBase
2L	10181718	2L_10181718_SNP [dm3] 2L_10181718_SNP [dm6]	C	T	1.033e^-4	0.74	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2L	10181723	2L_10181723_SNP [dm3] 2L_10181723_SNP [dm6]	A	G	1.033e^-4	0.74	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2L	10181732	2L_10181732_SNP [dm3] 2L_10181732_SNP [dm6]	T	A	1.033e^-4	0.74	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2L	8762745	2L_8762745_SNP [dm3] 2L_8762745_SNP [dm6]	T	G	1.044e^-4	0.74	INTERGENIC
3L	769149	3L_769149_SNP [dm3] 3L_769149_SNP [dm6]	A	G	1.056e^-4	0.74	UPSTREAM tRNA:CR32480 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	4695772	3L_4695772_SNP [dm3] 3L_4695772_SNP [dm6]	T	C	1.064e^-4	0.74	UPSTREAM CG15876 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13591135	3L_13591135_INS [dm3] 3L_13598035_INS [dm6]	G	GC	1.068e^-4	0.74	INTRON bru-3
2L	9428545	2L_9428545_SNP [dm3] 2L_9428545_SNP [dm6]	C	T	1.069e^-4	0.74	UTR_3_PRIME CG42847 DOWNSTREAM FucTB & 1 other
X	10872291	X_10872291_SNP [dm3] X_10978258_SNP [dm6]	C	G	1.074e^-4	0.74	INTRON CG42339
2L	4326359	2L_4326359_SNP [dm3] 2L_4326359_SNP [dm6]	T	C	1.081e^-4	0.74	INTRON CG16857
2L	13877716	2L_13877716_SNP [dm3] 2L_13877716_SNP [dm6]	A	G	1.098e^-4	0.74	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10269314	3L_10269314_SNP [dm3] 3L_10276214_SNP [dm6]	T	G	1.100e^-4	0.74	INTERGENIC
3L	8485532	3L_8485532_SNP [dm3] 3L_8492432_SNP [dm6]	A	G	1.113e^-4	0.74	INTRON CG43163
2R	19735599	2R_19735599_SNP [dm3] 2R_23848076_SNP [dm6]	G	C	1.113e^-4	0.74	UTR_3_PRIME ytr	TF binding site mE1_TFBS_chinmo
3R	11128005	3R_11128005_DEL [dm3] 3R_15302283_DEL [dm6]	TAATTCACTGAGATATTTAT...	T	1.115e^-4	0.74	INTRON Tm1	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	19038218	3R_19038218_SNP [dm3] 3R_23212496_SNP [dm6]	A	C	1.120e^-4	0.74	INTRON cnc	TF binding site BDTNP1_TFBS_dl
2R	16188909	2R_16188909_SNP [dm3] 2R_20301404_SNP [dm6]	G	T	1.122e^-4	0.74	UPSTREAM CR44640 INTERGENIC
2R	17676065	2R_17676065_SNP [dm3] 2R_21788560_SNP [dm6]	G	A	1.127e^-4	0.74	INTERGENIC
X	6562903	X_6562903_SNP [dm3] X_6668870_SNP [dm6]	A	G	1.130e^-4	0.74	UTR_3_PRIME CG3198 DOWNSTREAM Ctr1A	TF binding site BDTNP1_TFBS_dl
3L	16931385	3L_16931385_SNP [dm3] 3L_16938285_SNP [dm6]	C	T	1.138e^-4	0.74	DOWNSTREAM CG13022 & 1 other INTERGENIC
2R	6976935	2R_6976935_SNP [dm3] 2R_11089430_SNP [dm6]	T	G	1.146e^-4	0.74	INTRON luna	TF binding site BDTNP1_TFBS_twi
3L	10731066	3L_10731066_INS [dm3] 3L_10737966_INS [dm6]	T	TTTATAAT	1.146e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	5450954	X_5450954_SNP [dm3] X_5556921_SNP [dm6]	C	G	1.152e^-4	0.74	INTRON Vsx2
3L	11649398	3L_11649398_SNP [dm3] 3L_11656298_SNP [dm6]	T	C	1.164e^-4	0.74	UPSTREAM mir-274 INTRON CG32085
2L	9428917	2L_9428917_SNP [dm3] 2L_9428917_SNP [dm6]	T	A	1.167e^-4	0.74	SYNONYMOUS_CODING FucTB DOWNSTREAM Fbp2 & 1 other
3R	3765618	3R_3765618_SNP [dm3] 3R_7939896_SNP [dm6]	T	A	1.168e^-4	0.74	INTRON dsx
3R	3765638	3R_3765638_SNP [dm3] 3R_7939916_SNP [dm6]	A	G	1.168e^-4	0.74	INTRON dsx
3L	14188848	3L_14188848_SNP [dm3] 3L_14195748_SNP [dm6]	A	C	1.180e^-4	0.74	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19733028	2R_19733028_SNP [dm3] 2R_23845505_SNP [dm6]	T	C	1.190e^-4	0.74	UPSTREAM Snap29 INTRON CG5554	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2673207	3L_2673207_SNP [dm3] 3L_2673207_SNP [dm6]	G	A	1.198e^-4	0.74	SYNONYMOUS_CODING Fife
X	9731880	X_9731880_SNP [dm3] X_9837847_SNP [dm6]	A	G	1.204e^-4	0.74	INTRON CG32698
X	9731886	X_9731886_SNP [dm3] X_9837853_SNP [dm6]	T	A	1.204e^-4	0.74	INTRON CG32698
3R	26125295	3R_26125295_SNP [dm3] 3R_30299573_SNP [dm6]	C	T	1.212e^-4	0.74	INTRON hdc
3L	19531135	3L_19531135_DEL [dm3] 3L_19538035_DEL [dm6]	AA	A	1.226e^-4	0.74	UTR_3_PRIME Cpr76Bd DOWNSTREAM CG9279
2L	13716643	2L_13716643_SNP [dm3] 2L_13716643_SNP [dm6]	T	G	1.229e^-4	0.74	INTRON CG31814
3R	25407484	3R_25407484_SNP [dm3] 3R_29581762_SNP [dm6]	T	C	1.233e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	13747050	2R_13747050_SNP [dm3] 2R_17859545_SNP [dm6]	G	A	1.238e^-4	0.74	SYNONYMOUS_CODING olf186-F
2R	13747059	2R_13747059_SNP [dm3] 2R_17859554_SNP [dm6]	T	C	1.238e^-4	0.74	SYNONYMOUS_CODING olf186-F
3L	11341765	3L_11341765_SNP [dm3] 3L_11348665_SNP [dm6]	A	T	1.239e^-4	0.74	DOWNSTREAM CR45251 INTERGENIC
3L	11341767	3L_11341767_SNP [dm3] 3L_11348667_SNP [dm6]	G	T	1.239e^-4	0.74	DOWNSTREAM CR45251 INTERGENIC
3L	13591132	3L_13591132_SNP [dm3] 3L_13598032_SNP [dm6]	T	C	1.256e^-4	0.74	INTRON bru-3
3R	13979052	3R_13979052_SNP [dm3] 3R_18153330_SNP [dm6]	T	C	1.261e^-4	0.74	SYNONYMOUS_CODING CG14316
2R	16400394	2R_16400394_SNP [dm3] 2R_20512889_SNP [dm6]	A	G	1.269e^-4	0.74	SYNONYMOUS_CODING CG13426 DOWNSTREAM CR44649
3L	19504490	3L_19504490_SNP [dm3] 3L_19511390_SNP [dm6]	A	T	1.271e^-4	0.74	INTERGENIC
2R	15877225	2R_15877225_SNP [dm3] 2R_19989720_SNP [dm6]	A	T	1.276e^-4	0.74	INTERGENIC
2L	13716844	2L_13716844_SNP [dm3] 2L_13716844_SNP [dm6]	C	G	1.282e^-4	0.74	INTRON CG31814
2L	8766156	2L_8766156_SNP [dm3] 2L_8766156_SNP [dm6]	A	G	1.292e^-4	0.74	SYNONYMOUS_CODING CG9463
2R	10368916	2R_10368916_SNP [dm3] 2R_14481411_SNP [dm6]	T	A	1.296e^-4	0.74	UTR_5_PRIME L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	15163683	X_15163683_SNP [dm3] X_15269650_SNP [dm6]	A	T	1.296e^-4	0.74	INTERGENIC
X	20227806	X_20227806_SNP [dm3] X_20356779_SNP [dm6]	G	A	1.298e^-4	0.74	INTERGENIC
2L	17247765	2L_17247765_SNP [dm3] 2L_17247765_SNP [dm6]	T	G	1.300e^-4	0.74	DOWNSTREAM CR44395 INTRON beat-IIIc
X	21929642	X_21929642_SNP [dm3] X_22527806_SNP [dm6]	C	T	1.322e^-4	0.74	INTRON CG17600
3L	770549	3L_770549_SNP [dm3] 3L_770549_SNP [dm6]	G	A	1.324e^-4	0.74	DOWNSTREAM tRNA:CR32480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9865768	3L_9865768_SNP [dm3] 3L_9872668_SNP [dm6]	A	T	1.339e^-4	0.74	INTERGENIC
2R	15591923	2R_15591923_SNP [dm3] 2R_19704418_SNP [dm6]	T	G	1.353e^-4	0.74	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
2L	10181684	2L_10181684_SNP [dm3] 2L_10181684_SNP [dm6]	A	C	1.356e^-4	0.74	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2L	8766911	2L_8766911_SNP [dm3] 2L_8766911_SNP [dm6]	A	C	1.366e^-4	0.74	NON_SYNONYMOUS_CODING CG9463
2L	2851118	2L_2851118_SNP [dm3] 2L_2851118_SNP [dm6]	C	T	1.369e^-4	0.74	INTRON CG3104
2L	2851122	2L_2851122_SNP [dm3] 2L_2851122_SNP [dm6]	C	G	1.369e^-4	0.74	INTRON CG3104
2R	17676151	2R_17676151_SNP [dm3] 2R_21788646_SNP [dm6]	C	T	1.376e^-4	0.74	DOWNSTREAM lox2 INTERGENIC
3R	19038208	3R_19038208_SNP [dm3] 3R_23212486_SNP [dm6]	C	T	1.385e^-4	0.74	INTRON cnc	TF binding site BDTNP1_TFBS_dl
2L	1677679	2L_1677679_SNP [dm3] 2L_1677679_SNP [dm6]	G	A	1.392e^-4	0.74	INTRON chinmo
2L	10181695	2L_10181695_SNP [dm3] 2L_10181695_SNP [dm6]	C	A	1.402e^-4	0.74	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2L	10181696	2L_10181696_SNP [dm3] 2L_10181696_SNP [dm6]	A	C	1.402e^-4	0.74	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
3L	9873427	3L_9873427_SNP [dm3] 3L_9880327_SNP [dm6]	A	G	1.402e^-4	0.74	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
2L	13671767	2L_13671767_SNP [dm3] 2L_13671767_SNP [dm6]	C	T	1.412e^-4	0.74	DOWNSTREAM CG18507 INTRON CG18507
2L	22944948	2L_22944948_DEL [dm3] 2L_23052216_DEL [dm6]	GC	G	1.412e^-4	0.74	INTERGENIC
3R	10122990	3R_10122990_SNP [dm3] 3R_14297268_SNP [dm6]	C	A	1.417e^-4	0.74	UPSTREAM CG12207 INTRON CG12207
3L	10905762	3L_10905762_SNP [dm3] 3L_10912662_SNP [dm6]	A	T	1.420e^-4	0.74	INTERGENIC
2L	14011440	2L_14011440_SNP [dm3] 2L_14011440_SNP [dm6]	T	G	1.432e^-4	0.74	UPSTREAM tRNA:Q:34E INTERGENIC
2L	14444762	2L_14444762_SNP [dm3] 2L_14444762_SNP [dm6]	G	T	1.435e^-4	0.74	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	8766261	2L_8766261_SNP [dm3] 2L_8766261_SNP [dm6]	G	A	1.439e^-4	0.74	SYNONYMOUS_CODING CG9463
3R	9664215	3R_9664215_SNP [dm3] 3R_13838493_SNP [dm6]	G	A	1.445e^-4	0.74	UTR_3_PRIME CG31495 UPSTREAM Nsf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16831281	2R_16831281_SNP [dm3] 2R_20943776_SNP [dm6]	C	T	1.447e^-4	0.74	UPSTREAM Act57B INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9430498	2L_9430498_SNP [dm3] 2L_9430498_SNP [dm6]	T	A	1.448e^-4	0.74	UPSTREAM FucTB & 1 other INTRON FucTB
3L	10269323	3L_10269323_SNP [dm3] 3L_10276223_SNP [dm6]	T	A	1.460e^-4	0.74	INTERGENIC
2L	12527584	2L_12527584_SNP [dm3] 2L_12527584_SNP [dm6]	A	T	1.469e^-4	0.74	INTRON bun	TF binding site BDTNP1_TFBS_dl
3R	10247733	3R_10247733_SNP [dm3] 3R_14422011_SNP [dm6]	C	T	1.485e^-4	0.74	SPLICE_SITE_REGION CR44176 DOWNSTREAM natalisin INTRON cv-c EXON CR44176
2L	14359817	2L_14359817_SNP [dm3] 2L_14359817_SNP [dm6]	T	C	1.507e^-4	0.74	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9955163	3R_9955163_SNP [dm3] 3R_14129441_SNP [dm6]	A	G	1.515e^-4	0.74	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8996770	2L_8996770_SNP [dm3] 2L_8996770_SNP [dm6]	A	G	1.518e^-4	0.74	SYNONYMOUS_CODING alien UPSTREAM CG18661	TF binding site BDTNP1_TFBS_dl
3L	10731932	3L_10731932_SNP [dm3] 3L_10738832_SNP [dm6]	T	A	1.518e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8460942	3L_8460942_SNP [dm3] 3L_8467842_SNP [dm6]	G	A	1.526e^-4	0.74	SYNONYMOUS_CODING Gug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8485989	3L_8485989_SNP [dm3] 3L_8492889_SNP [dm6]	C	G	1.529e^-4	0.74	INTRON CG43163	TF binding site mE1_TFBS_HSA
3L	8486030	3L_8486030_SNP [dm3] 3L_8492930_SNP [dm6]	C	T	1.529e^-4	0.74	INTRON CG43163	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8486072	3L_8486072_SNP [dm3] 3L_8492972_SNP [dm6]	T	C	1.529e^-4	0.74	INTRON CG43163	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16185652	3L_16185652_SNP [dm3] 3L_16192552_SNP [dm6]	C	A	1.530e^-4	0.74	INTERGENIC
3L	11525805	3L_11525805_SNP [dm3] 3L_11532705_SNP [dm6]	G	A	1.540e^-4	0.74	INTRON Mob2
3L	14188795	3L_14188795_SNP [dm3] 3L_14195695_SNP [dm6]	A	T	1.540e^-4	0.74	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	14188828	3L_14188828_SNP [dm3] 3L_14195728_SNP [dm6]	T	G	1.540e^-4	0.74	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	4349879	3R_4349879_SNP [dm3] 3R_8524157_SNP [dm6]	T	A	1.540e^-4	0.74	UTR_5_PRIME CG31259 DOWNSTREAM CG31454
2R	15592011	2R_15592011_SNP [dm3] 2R_19704506_SNP [dm6]	T	C	1.542e^-4	0.74	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
2R	15592012	2R_15592012_SNP [dm3] 2R_19704507_SNP [dm6]	A	T	1.542e^-4	0.74	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
2R	15592052	2R_15592052_SNP [dm3] 2R_19704547_SNP [dm6]	C	A	1.542e^-4	0.74	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
3L	14513137	3L_14513137_SNP [dm3] 3L_14520037_SNP [dm6]	G	T	1.550e^-4	0.74	INTRON bbg & 1 other
3L	15320685	3L_15320685_SNP [dm3] 3L_15327585_SNP [dm6]	A	T	1.558e^-4	0.74	INTERGENIC
3L	13339531	3L_13339531_SNP [dm3] 3L_13346431_SNP [dm6]	G	T	1.561e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12968846	3R_12968846_SNP [dm3] 3R_17143124_SNP [dm6]	A	T	1.568e^-4	0.74	UPSTREAM TwdlW INTERGENIC
2R	10963383	2R_10963383_SNP [dm3] 2R_15075878_SNP [dm6]	A	C	1.593e^-4	0.74	INTERGENIC
2L	3522662	2L_3522662_SNP [dm3] 2L_3522662_SNP [dm6]	C	T	1.598e^-4	0.74	NON_SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
2L	13743364	2L_13743364_SNP [dm3] 2L_13743364_SNP [dm6]	T	G	1.618e^-4	0.74	INTERGENIC
2R	19025083	2R_19025083_DEL [dm3] 2R_23137560_DEL [dm6]	TTTTATCT	T	1.628e^-4	0.74	INTERGENIC
2R	9347601	2R_9347601_SNP [dm3] 2R_13460096_SNP [dm6]	C	T	1.633e^-4	0.74	INTRON arr	TF binding site mE1_TFBS_chinmo
X	4414854	X_4414854_SNP [dm3] X_4520821_SNP [dm6]	C	T	1.633e^-4	0.74	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	19024678	2R_19024678_SNP [dm3] 2R_23137155_SNP [dm6]	A	T	1.641e^-4	0.74	INTERGENIC
X	13343445	X_13343445_SNP [dm3] X_13449412_SNP [dm6]	C	T	1.659e^-4	0.74	INTRON Neto
2L	10181779	2L_10181779_INS [dm3] 2L_10181779_INS [dm6]	T	TTTCAGTGAATGT...	1.660e^-4	0.74	DOWNSTREAM Sur INTERGENIC
X	6562883	X_6562883_SNP [dm3] X_6668850_SNP [dm6]	C	G	1.670e^-4	0.74	UTR_3_PRIME CG3198 DOWNSTREAM Ctr1A	TF binding site BDTNP1_TFBS_dl
3L	3096331	3L_3096331_SNP [dm3] 3L_3096331_SNP [dm6]	A	T	1.674e^-4	0.74	UPSTREAM tRNA:CR32287 & 1 other DOWNSTREAM tRNA:CR32288 & 2 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	5436478	3R_5436478_SNP [dm3] 3R_9610756_SNP [dm6]	T	A	1.676e^-4	0.74	INTRON CG8312
3R	5436480	3R_5436480_SNP [dm3] 3R_9610758_SNP [dm6]	T	G	1.676e^-4	0.74	INTRON CG8312
3L	4695256	3L_4695256_SNP [dm3] 3L_4695256_SNP [dm6]	A	T	1.682e^-4	0.74	UPSTREAM CG15876 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11549181	3L_11549181_SNP [dm3] 3L_11556081_SNP [dm6]	A	G	1.692e^-4	0.74	INTRON Mob2	TF binding site BDTNP1_TFBS_dl
X	1242946	X_1242946_SNP [dm3] X_1348913_SNP [dm6]	T	C	1.696e^-4	0.74	NON_SYNONYMOUS_CODING CG11418 DOWNSTREAM Tsp2A & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22141451	3R_22141451_SNP [dm3] 3R_26315729_SNP [dm6]	C	T	1.700e^-4	0.74	INTERGENIC
3L	10905993	3L_10905993_SNP [dm3] 3L_10912893_SNP [dm6]	C	T	1.701e^-4	0.74	INTERGENIC
2L	3752074	2L_3752074_SNP [dm3] 2L_3752074_SNP [dm6]	C	T	1.712e^-4	0.74	NON_SYNONYMOUS_CODING CG10019
3L	2673128	3L_2673128_SNP [dm3] 3L_2673128_SNP [dm6]	C	A	1.726e^-4	0.74	NON_SYNONYMOUS_CODING Fife
X	16343083	X_16343083_SNP [dm3] X_16449050_SNP [dm6]	G	T	1.732e^-4	0.74	UPSTREAM Rbp2 & 1 other INTRON Rbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	10285658	X_10285658_SNP [dm3] X_10391625_SNP [dm6]	C	T	1.732e^-4	0.74	INTRON flw
X	10285676	X_10285676_SNP [dm3] X_10391643_SNP [dm6]	A	G	1.732e^-4	0.74	INTRON flw
X	10285725	X_10285725_SNP [dm3] X_10391692_SNP [dm6]	A	C	1.732e^-4	0.74	INTRON flw
2L	7387617	2L_7387617_SNP [dm3] 2L_7387617_SNP [dm6]	C	A	1.738e^-4	0.74	UPSTREAM gudu INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7387624	2L_7387624_SNP [dm3] 2L_7387624_SNP [dm6]	A	G	1.738e^-4	0.74	UPSTREAM gudu INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7387626	2L_7387626_SNP [dm3] 2L_7387626_SNP [dm6]	A	T	1.738e^-4	0.74	UPSTREAM gudu INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7387644	2L_7387644_SNP [dm3] 2L_7387644_SNP [dm6]	G	T	1.738e^-4	0.74	UPSTREAM gudu INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	19504489	3L_19504489_SNP [dm3] 3L_19511389_SNP [dm6]	A	C	1.738e^-4	0.74	INTERGENIC
X	13366259	X_13366259_SNP [dm3] X_13472226_SNP [dm6]	A	G	1.749e^-4	0.74	INTRON Neto
X	2695482	X_2695482_SNP [dm3] X_2801449_SNP [dm6]	C	T	1.770e^-4	0.74	INTRON kirre
3R	3765605	3R_3765605_SNP [dm3] 3R_7939883_SNP [dm6]	T	A	1.796e^-4	0.74	INTRON dsx
3L	11637434	3L_11637434_SNP [dm3] 3L_11644334_SNP [dm6]	G	A	1.798e^-4	0.74	SYNONYMOUS_CODING CG6071
3L	769090	3L_769090_SNP [dm3] 3L_769090_SNP [dm6]	C	T	1.811e^-4	0.74	UPSTREAM tRNA:CR32480 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	5371794	X_5371794_SNP [dm3] X_5477761_SNP [dm6]	A	C	1.811e^-4	0.74	INTRON SPR
2L	15020541	2L_15020541_SNP [dm3] 2L_15020541_SNP [dm6]	C	T	1.831e^-4	0.74	INTRON GABA-B-R1
X	8423673	X_8423673_SNP [dm3] X_8529640_SNP [dm6]	A	G	1.832e^-4	0.74	UTR_5_PRIME PIP82 INTRON Nrg	TF binding site BDTNP1_TFBS_dl
3L	16658019	3L_16658019_SNP [dm3] 3L_16664919_SNP [dm6]	A	T	1.841e^-4	0.74	INTRON Galphaf
3L	13097072	3L_13097072_SNP [dm3] 3L_13103972_SNP [dm6]	C	A	1.841e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	21283194	X_21283194_SNP [dm3] X_21412167_SNP [dm6]	G	A	1.841e^-4	0.74	INTERGENIC
X	21283235	X_21283235_SNP [dm3] X_21412208_SNP [dm6]	G	A	1.841e^-4	0.74	INTERGENIC
3L	13591134	3L_13591134_SNP [dm3] 3L_13598034_SNP [dm6]	A	G	1.857e^-4	0.74	INTRON bru-3
3R	12970207	3R_12970207_SNP [dm3] 3R_17144485_SNP [dm6]	C	A	1.857e^-4	0.74	UTR_3_PRIME m-cup DOWNSTREAM m-cup
3R	13471274	3R_13471274_SNP [dm3] 3R_17645552_SNP [dm6]	C	T	1.859e^-4	0.74	UPSTREAM tRNA:CR31578 & 2 others DOWNSTREAM CG43175 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10607976	3L_10607976_SNP [dm3] 3L_10614876_SNP [dm6]	A	G	1.860e^-4	0.74	INTERGENIC
3R	5091823	3R_5091823_SNP [dm3] 3R_9266101_SNP [dm6]	T	A	1.861e^-4	0.74	UPSTREAM Vps16A INTRON Aats-trp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12527748	2L_12527748_SNP [dm3] 2L_12527748_SNP [dm6]	T	C	1.863e^-4	0.74	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16658030	3L_16658030_SNP [dm3] 3L_16664930_SNP [dm6]	T	G	1.863e^-4	0.74	INTRON Galphaf
2R	14327911	2R_14327911_SNP [dm3] 2R_18440406_SNP [dm6]	G	T	1.866e^-4	0.74	UTR_5_PRIME CG30118 UPSTREAM slim	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11599267	3L_11599267_SNP [dm3] 3L_11606167_SNP [dm6]	G	C	1.868e^-4	0.74	SYNONYMOUS_CODING CG6091 UTR_3_PRIME CG6091 DOWNSTREAM CG7368
3L	11599288	3L_11599288_SNP [dm3] 3L_11606188_SNP [dm6]	T	C	1.868e^-4	0.74	SYNONYMOUS_CODING CG6091 UTR_3_PRIME CG6091 DOWNSTREAM CG7368
3L	11599330	3L_11599330_SNP [dm3] 3L_11606230_SNP [dm6]	G	C	1.868e^-4	0.74	DOWNSTREAM CG7368 INTRON CG6091
3L	11599333	3L_11599333_SNP [dm3] 3L_11606233_SNP [dm6]	G	A	1.868e^-4	0.74	DOWNSTREAM CG7368 INTRON CG6091
2R	18604862	2R_18604862_SNP [dm3] 2R_22717357_SNP [dm6]	T	A	1.874e^-4	0.74	UTR_3_PRIME jbug DOWNSTREAM CG30268
2L	2853467	2L_2853467_SNP [dm3] 2L_2853467_SNP [dm6]	T	C	1.886e^-4	0.74	UTR_5_PRIME CG3104
2L	10704601	2L_10704601_SNP [dm3] 2L_10704601_SNP [dm6]	C	T	1.887e^-4	0.74	SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site mE1_TFBS_chinmo
2L	13412120	2L_13412120_SNP [dm3] 2L_13412120_SNP [dm6]	T	G	1.888e^-4	0.74	UPSTREAM CG16848 & 1 other INTERGENIC
3L	11606033	3L_11606033_SNP [dm3] 3L_11612933_SNP [dm6]	A	C	1.915e^-4	0.74	NON_SYNONYMOUS_CODING Muc68Ca
2R	824460	2R_824460_SNP [dm3] 2R_4936955_SNP [dm6]	T	A	1.921e^-4	0.74	INTRON Ir41a	transposable element FlyBase
2R	19025081	2R_19025081_SNP [dm3] 2R_23137558_SNP [dm6]	C	T	1.951e^-4	0.74	INTERGENIC
3L	16356772	3L_16356772_SNP [dm3] 3L_16363672_SNP [dm6]	T	C	1.973e^-4	0.74	SYNONYMOUS_CODING Cpr72Ea
2R	17695926	2R_17695926_SNP [dm3] 2R_21808421_SNP [dm6]	G	T	1.979e^-4	0.74	INTERGENIC
3L	1307483	3L_1307483_SNP [dm3] 3L_1307483_SNP [dm6]	G	A	1.979e^-4	0.74	UPSTREAM CG2469 & 1 other INTRON CG2469	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
3L	1307503	3L_1307503_SNP [dm3] 3L_1307503_SNP [dm6]	A	T	1.979e^-4	0.74	UPSTREAM CG2469 & 1 other INTRON CG2469	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	1307627	3L_1307627_SNP [dm3] 3L_1307627_SNP [dm6]	A	T	1.979e^-4	0.74	SPLICE_SITE_REGION CG2469 UTR_5_PRIME CG2469 UPSTREAM CG2277	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	1308014	3L_1308014_SNP [dm3] 3L_1308014_SNP [dm6]	G	A	1.979e^-4	0.74	SYNONYMOUS_CODING CG2469 UPSTREAM CG2277	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1308299	3L_1308299_SNP [dm3] 3L_1308299_SNP [dm6]	C	G	1.979e^-4	0.74	SYNONYMOUS_CODING CG2469 UPSTREAM CG2277	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	2132971	3R_2132971_SNP [dm3] 3R_6307249_SNP [dm6]	A	C	1.981e^-4	0.74	NON_SYNONYMOUS_CODING CG31556 DOWNSTREAM Osi16	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2134621	3R_2134621_SNP [dm3] 3R_6308899_SNP [dm6]	C	A	1.981e^-4	0.74	NON_SYNONYMOUS_CODING CG31556
3L	11672828	3L_11672828_SNP [dm3] 3L_11679728_SNP [dm6]	A	G	1.983e^-4	0.74	INTRON CG32085
2L	10048417	2L_10048417_SNP [dm3] 2L_10048417_SNP [dm6]	C	A	1.985e^-4	0.74	INTERGENIC
3R	21385360	3R_21385360_SNP [dm3] 3R_25559638_SNP [dm6]	C	T	1.991e^-4	0.74	INTRON msi
X	19364133	X_19364133_SNP [dm3] X_19470100_SNP [dm6]	A	G	2.027e^-4	0.74	UTR_3_PRIME kek5 DOWNSTREAM kek5	TF binding site mE1_TFBS_cad
2R	10368451	2R_10368451_SNP [dm3] 2R_14480946_SNP [dm6]	A	T	2.032e^-4	0.74	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10368493	2R_10368493_SNP [dm3] 2R_14480988_SNP [dm6]	T	A	2.032e^-4	0.74	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19735564	2R_19735564_SNP [dm3] 2R_23848041_SNP [dm6]	C	G	2.045e^-4	0.74	UTR_3_PRIME ytr	TF binding site mE1_TFBS_chinmo
2L	3825069	2L_3825069_SNP [dm3] 2L_3825069_SNP [dm6]	T	C	2.054e^-4	0.74	UPSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	3825075	2L_3825075_SNP [dm3] 2L_3825075_SNP [dm6]	T	A	2.054e^-4	0.74	UPSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	11621897	3L_11621897_SNP [dm3] 3L_11628797_SNP [dm6]	C	G	2.056e^-4	0.74	UPSTREAM mir-3642 INTRON CG18815	TF binding site mE1_TFBS_HSA
2L	10082494	2L_10082494_SNP [dm3] 2L_10082494_SNP [dm6]	A	G	2.072e^-4	0.74	INTRON CG44153
3L	10695675	3L_10695675_SNP [dm3] 3L_10702575_SNP [dm6]	A	T	2.102e^-4	0.74	INTERGENIC
2R	6280663	2R_6280663_SNP [dm3] 2R_10393158_SNP [dm6]	C	T	2.129e^-4	0.74	INTRON CG42732
3R	18909679	3R_18909679_SNP [dm3] 3R_23083957_SNP [dm6]	C	A	2.133e^-4	0.74	INTRON CG13830	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	770800	3L_770800_DEL [dm3] 3L_770800_DEL [dm6]	ACATA	A	2.140e^-4	0.74	DOWNSTREAM tRNA:CR32481 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7158796	2R_7158796_SNP [dm3] 2R_11271291_SNP [dm6]	A	G	2.141e^-4	0.74	INTRON Cpr47Ef
3R	26363093	3R_26363093_SNP [dm3] 3R_30537371_SNP [dm6]	C	A	2.148e^-4	0.74	INTRON tmod
2R	15273849	2R_15273849_SNP [dm3] 2R_19386344_SNP [dm6]	T	C	2.154e^-4	0.74	SYNONYMOUS_CODING CG10081
2R	15273852	2R_15273852_SNP [dm3] 2R_19386347_SNP [dm6]	A	G	2.154e^-4	0.74	SYNONYMOUS_CODING CG10081
2R	20723118	2R_20723118_SNP [dm3] 2R_24835595_SNP [dm6]	T	G	2.157e^-4	0.74	UTR_3_PRIME Dll DOWNSTREAM Dll
X	4414840	X_4414840_INS [dm3] X_4520807_INS [dm6]	T	TA	2.168e^-4	0.74	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
X	4414859	X_4414859_SNP [dm3] X_4520826_SNP [dm6]	G	C	2.168e^-4	0.74	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
X	4414872	X_4414872_SNP [dm3] X_4520839_SNP [dm6]	A	T	2.168e^-4	0.74	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
X	4414888	X_4414888_SNP [dm3] X_4520855_SNP [dm6]	T	G	2.168e^-4	0.74	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3L	8485970	3L_8485970_SNP [dm3] 3L_8492870_SNP [dm6]	G	C	2.175e^-4	0.74	INTRON CG43163	TF binding site mE1_TFBS_HSA
3L	16934132	3L_16934132_SNP [dm3] 3L_16941032_SNP [dm6]	C	T	2.176e^-4	0.74	INTRON Cpr73D
3L	16648640	3L_16648640_SNP [dm3] 3L_16655540_SNP [dm6]	G	C	2.176e^-4	0.74	INTRON Baldspot
3L	9873289	3L_9873289_SNP [dm3] 3L_9880189_SNP [dm6]	C	A	2.179e^-4	0.74	INTRON CG34382	TF binding site mE1_TFBS_chinmo
2R	17676149	2R_17676149_SNP [dm3] 2R_21788644_SNP [dm6]	C	T	2.179e^-4	0.74	DOWNSTREAM lox2 INTERGENIC
2R	8914876	2R_8914876_SNP [dm3] 2R_13027371_SNP [dm6]	G	A	2.180e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	6788386	X_6788386_SNP [dm3] X_6894353_SNP [dm6]	T	G	2.182e^-4	0.74	INTERGENIC
2L	9463855	2L_9463855_SNP [dm3] 2L_9463855_SNP [dm6]	C	T	2.186e^-4	0.74	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
3L	19456653	3L_19456653_SNP [dm3] 3L_19463553_SNP [dm6]	C	G	2.195e^-4	0.74	DOWNSTREAM CG14095 INTERGENIC
X	14511435	X_14511435_SNP [dm3] X_14617402_SNP [dm6]	A	T	2.199e^-4	0.74	INTRON NetA
2L	3960894	2L_3960894_SNP [dm3] 2L_3960894_SNP [dm6]	G	A	2.204e^-4	0.74	INTRON fred
2R	13784072	2R_13784072_SNP [dm3] 2R_17896567_SNP [dm6]	A	C	2.207e^-4	0.74	DOWNSTREAM CG14491 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10790313	2L_10790313_SNP [dm3] 2L_10790313_SNP [dm6]	A	G	2.226e^-4	0.74	START_GAINED CG31870 UTR_5_PRIME CG31870 INTRON CG31869
2L	9606736	2L_9606736_SNP [dm3] 2L_9606736_SNP [dm6]	T	G	2.226e^-4	0.74	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2L	13414010	2L_13414010_SNP [dm3] 2L_13414010_SNP [dm6]	A	C	2.234e^-4	0.74	NON_SYNONYMOUS_CODING CG16956 DOWNSTREAM CG16848
2R	1711923	2R_1711923_SNP [dm3] 2R_5824418_SNP [dm6]	A	G	2.239e^-4	0.74	INTRON dpr12
2R	2789570	2R_2789570_SNP [dm3] 2R_6902065_SNP [dm6]	A	C	2.242e^-4	0.74	INTRON CG30158
3L	10726729	3L_10726729_SNP [dm3] 3L_10733629_SNP [dm6]	A	G	2.245e^-4	0.74	INTERGENIC
3L	10726744	3L_10726744_SNP [dm3] 3L_10733644_SNP [dm6]	G	A	2.245e^-4	0.74	INTERGENIC
2L	4590373	2L_4590373_SNP [dm3] 2L_4590373_SNP [dm6]	C	T	2.250e^-4	0.74	INTRON dp
2L	4590531	2L_4590531_SNP [dm3] 2L_4590531_SNP [dm6]	T	G	2.250e^-4	0.74	INTRON dp
3R	25370157	3R_25370157_SNP [dm3] 3R_29544435_SNP [dm6]	C	T	2.263e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_sens
X	14905574	X_14905574_SNP [dm3] X_15011541_SNP [dm6]	C	T	2.263e^-4	0.74	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2L	13718420	2L_13718420_SNP [dm3] 2L_13718420_SNP [dm6]	T	A	2.268e^-4	0.74	INTERGENIC
2L	13716268	2L_13716268_SNP [dm3] 2L_13716268_SNP [dm6]	C	T	2.270e^-4	0.74	INTRON CG31814
3R	13145823	3R_13145823_SNP [dm3] 3R_17320101_SNP [dm6]	T	C	2.270e^-4	0.74	UTR_3_PRIME beat-IIa
2L	9720234	2L_9720234_SNP [dm3] 2L_9720234_SNP [dm6]	A	T	2.279e^-4	0.74	INTRON Nckx30C
3L	12548226	3L_12548226_SNP [dm3] 3L_12555126_SNP [dm6]	A	T	2.282e^-4	0.74	INTRON sowah
2R	15592053	2R_15592053_INS [dm3] 2R_19704548_INS [dm6]	C	CTCGAT	2.285e^-4	0.74	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
3R	5416244	3R_5416244_SNP [dm3] 3R_9590522_SNP [dm6]	G	A	2.309e^-4	0.74	SYNONYMOUS_CODING bocksbeutel UPSTREAM CG8312 DOWNSTREAM P58IPK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17953839	2R_17953839_SNP [dm3] 2R_22066334_SNP [dm6]	C	T	2.316e^-4	0.74	UPSTREAM Snp & 1 other INTRON Snp	TF binding site BDTNP1_TFBS_twi
3R	14389510	3R_14389510_SNP [dm3] 3R_18563788_SNP [dm6]	C	T	2.320e^-4	0.74	DOWNSTREAM CG43210 & 1 other INTERGENIC
2L	13735521	2L_13735521_SNP [dm3] 2L_13735521_SNP [dm6]	C	G	2.333e^-4	0.74	UPSTREAM CG31813 INTERGENIC
3L	16356790	3L_16356790_SNP [dm3] 3L_16363690_SNP [dm6]	C	T	2.334e^-4	0.74	UTR_3_PRIME Cpr72Ea
3L	17239734	3L_17239734_SNP [dm3] 3L_17246634_SNP [dm6]	G	C	2.338e^-4	0.74	INTRON CR43870
2L	7643352	2L_7643352_SNP [dm3] 2L_7643352_SNP [dm6]	A	C	2.341e^-4	0.74	UTR_3_PRIME Slob DOWNSTREAM Slob
2L	13411777	2L_13411777_SNP [dm3] 2L_13411777_SNP [dm6]	C	T	2.347e^-4	0.74	UPSTREAM CG16848 & 1 other DOWNSTREAM CG7110 INTERGENIC
2L	19688489	2L_19688489_SNP [dm3] 2L_19688489_SNP [dm6]	G	A	2.353e^-4	0.74	INTRON Lar	TF binding site BDTNP1_TFBS_twi
3L	19456679	3L_19456679_SNP [dm3] 3L_19463579_SNP [dm6]	G	A	2.354e^-4	0.74	DOWNSTREAM CG14095 INTERGENIC
3R	8425147	3R_8425147_DEL [dm3] 3R_12599425_DEL [dm6]	CCCAATATAGCCATTGATTG...	C	2.356e^-4	0.74	INTERGENIC	insulator Insulator_Class_II.mE01
X	20558990	X_20558990_SNP [dm3] X_20687963_SNP [dm6]	G	A	2.362e^-4	0.74	DOWNSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	3092929	3L_3092929_SNP [dm3] 3L_3092929_SNP [dm6]	C	T	2.372e^-4	0.74	SYNONYMOUS_CODING Cht7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2953499	2R_2953499_SNP [dm3] 2R_7065994_SNP [dm6]	G	A	2.377e^-4	0.74	SYNONYMOUS_STOP Tsp42Er
2R	2954135	2R_2954135_SNP [dm3] 2R_7066630_SNP [dm6]	T	C	2.377e^-4	0.74	DOWNSTREAM Tsp42Er INTERGENIC	TF binding site mE1_TFBS_cad
3L	11922245	3L_11922245_SNP [dm3] 3L_11929145_SNP [dm6]	C	A	2.410e^-4	0.74	INTRON CG44837 & 1 other
2L	12527657	2L_12527657_SNP [dm3] 2L_12527657_SNP [dm6]	T	A	2.426e^-4	0.74	INTRON bun	TF binding site BDTNP1_TFBS_dl
2R	7111621	2R_7111621_SNP [dm3] 2R_11224116_SNP [dm6]	T	C	2.443e^-4	0.74	INTRON CG7737	TF binding site BDTNP1_TFBS_twi
3R	19041003	3R_19041003_SNP [dm3] 3R_23215281_SNP [dm6]	T	A	2.464e^-4	0.74	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	19041014	3R_19041014_SNP [dm3] 3R_23215292_SNP [dm6]	C	G	2.464e^-4	0.74	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	19041070	3R_19041070_SNP [dm3] 3R_23215348_SNP [dm6]	T	A	2.464e^-4	0.74	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	19041076	3R_19041076_INS [dm3] 3R_23215354_INS [dm6]	T	TAT	2.464e^-4	0.74	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	5129777	3R_5129777_SNP [dm3] 3R_9304055_SNP [dm6]	A	C	2.470e^-4	0.74	INTRON CG8861
2L	881603	2L_881603_SNP [dm3] 2L_881603_SNP [dm6]	A	G	2.474e^-4	0.74	INTRON CG15824	TF binding site mE1_TFBS_cad
3R	25391719	3R_25391719_DEL [dm3] 3R_29565997_DEL [dm6]	GTGG	G	2.478e^-4	0.74	DOWNSTREAM Dr INTERGENIC
3R	26246202	3R_26246202_SNP [dm3] 3R_30420480_SNP [dm6]	G	A	2.490e^-4	0.74	UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 DOWNSTREAM CG2217 INTRON CG42740 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	20558976	X_20558976_SNP [dm3] X_20687949_SNP [dm6]	C	A	2.491e^-4	0.74	DOWNSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	20558982	X_20558982_SNP [dm3] X_20687955_SNP [dm6]	A	T	2.491e^-4	0.74	DOWNSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	13473654	3R_13473654_SNP [dm3] 3R_17647932_SNP [dm6]	C	G	2.492e^-4	0.74	UTR_5_PRIME CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	16188462	2R_16188462_SNP [dm3] 2R_20300957_SNP [dm6]	A	T	2.503e^-4	0.74	INTERGENIC
X	8029048	X_8029048_SNP [dm3] X_8135015_SNP [dm6]	T	G	2.516e^-4	0.74	UPSTREAM CG2120 DOWNSTREAM CG10958 INTRON cyr
2R	2789427	2R_2789427_SNP [dm3] 2R_6901922_SNP [dm6]	T	G	2.523e^-4	0.74	INTRON CG30158
2R	18295857	2R_18295857_SNP [dm3] 2R_22408352_SNP [dm6]	A	T	2.524e^-4	0.74	UTR_3_PRIME CG6044 UPSTREAM ventrally-expressed-protein-D DOWNSTREAM qkr58E-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16998869	3L_16998869_SNP [dm3] 3L_17005769_SNP [dm6]	C	A	2.530e^-4	0.74	INTRON CG3764
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	2.537e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4949790	2L_4949790_SNP [dm3] 2L_4949790_SNP [dm6]	G	A	2.537e^-4	0.74	UPSTREAM jet DOWNSTREAM Jon25Biii INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	2997922	2R_2997922_SNP [dm3] 2R_7110417_SNP [dm6]	G	A	2.539e^-4	0.74	INTRON esn
2R	6569028	2R_6569028_INS [dm3] 2R_10681523_INS [dm6]	T	TT	2.547e^-4	0.74	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6568861	2R_6568861_SNP [dm3] 2R_10681356_SNP [dm6]	T	G	2.551e^-4	0.74	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16427338	2R_16427338_SNP [dm3] 2R_20539833_SNP [dm6]	T	G	2.570e^-4	0.74	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16427344	2R_16427344_INS [dm3] 2R_20539839_INS [dm6]	T	TATATATATATATATATA...	2.570e^-4	0.74	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3523295	2L_3523295_SNP [dm3] 2L_3523295_SNP [dm6]	G	T	2.576e^-4	0.74	NON_SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
X	4083386	X_4083386_SNP [dm3] X_4189353_SNP [dm6]	A	G	2.581e^-4	0.74	INTRON Fas2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19735454	2R_19735454_SNP [dm3] 2R_23847931_SNP [dm6]	C	T	2.590e^-4	0.74	UTR_3_PRIME ytr DOWNSTREAM CG5554
2R	19735459	2R_19735459_INS [dm3] 2R_23847936_INS [dm6]	T	TCATTTGGGTTTC...	2.590e^-4	0.74	UTR_3_PRIME ytr DOWNSTREAM CG5554
2R	19493011	2R_19493011_SNP [dm3] 2R_23605488_SNP [dm6]	C	A	2.592e^-4	0.74	UPSTREAM CG17664 DOWNSTREAM CG17662 INTRON CG17664
X	4287649	X_4287649_SNP [dm3] X_4393616_SNP [dm6]	G	A	2.599e^-4	0.74	INTRON CR32773
X	13545568	X_13545568_SNP [dm3] X_13651535_SNP [dm6]	T	C	2.605e^-4	0.74	INTRON NFAT
3L	5615573	3L_5615573_SNP [dm3] 3L_5622473_SNP [dm6]	A	G	2.614e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3L	5615598	3L_5615598_SNP [dm3] 3L_5622498_SNP [dm6]	A	G	2.614e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2R	6012741	2R_6012741_SNP [dm3] 2R_10125236_SNP [dm6]	A	G	2.619e^-4	0.74	UTR_5_PRIME gem UPSTREAM gem	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6013779	2R_6013779_SNP [dm3] 2R_10126274_SNP [dm6]	A	G	2.619e^-4	0.74	START_GAINED gem UTR_5_PRIME gem	TF binding site mE1_TFBS_Trl
2L	881620	2L_881620_SNP [dm3] 2L_881620_SNP [dm6]	A	G	2.622e^-4	0.74	INTRON CG15824	TF binding site mE1_TFBS_cad
2L	881627	2L_881627_SNP [dm3] 2L_881627_SNP [dm6]	T	A	2.622e^-4	0.74	INTRON CG15824	TF binding site mE1_TFBS_cad
2R	7111639	2R_7111639_SNP [dm3] 2R_11224134_SNP [dm6]	A	G	2.623e^-4	0.74	INTRON CG7737	TF binding site BDTNP1_TFBS_twi
2L	4952225	2L_4952225_SNP [dm3] 2L_4952225_SNP [dm6]	C	T	2.623e^-4	0.74	DOWNSTREAM Jon25Bii INTERGENIC	TF binding site mE1_TFBS_cad
3L	8487469	3L_8487469_SNP [dm3] 3L_8494369_SNP [dm6]	G	A	2.631e^-4	0.74	INTRON CG43163
3L	13906821	3L_13906821_SNP [dm3] 3L_13913721_SNP [dm6]	C	A	2.631e^-4	0.74	INTRON Rgl
2L	8762613	2L_8762613_SNP [dm3] 2L_8762613_SNP [dm6]	C	G	2.633e^-4	0.74	INTERGENIC
3L	11922222	3L_11922222_SNP [dm3] 3L_11929122_SNP [dm6]	A	G	2.642e^-4	0.74	INTRON CG44837 & 1 other
2R	16415517	2R_16415517_SNP [dm3] 2R_20528012_SNP [dm6]	C	T	2.643e^-4	0.74	DOWNSTREAM CG30151 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16415524	2R_16415524_SNP [dm3] 2R_20528019_SNP [dm6]	G	A	2.643e^-4	0.74	DOWNSTREAM CG30151 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7319392	X_7319392_SNP [dm3] X_7425359_SNP [dm6]	T	C	2.643e^-4	0.74	UTR_3_PRIME CG32726 UPSTREAM CG15036 DOWNSTREAM CG32726
2R	20469643	2R_20469643_SNP [dm3] 2R_24582120_SNP [dm6]	T	A	2.656e^-4	0.74	INTRON pio	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3R	27033957	3R_27033957_SNP [dm3] 3R_31208235_SNP [dm6]	T	G	2.683e^-4	0.74	INTRON chp
2L	12651268	2L_12651268_DEL [dm3] 2L_12651268_DEL [dm6]	CC	C	2.699e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25216349	3R_25216349_SNP [dm3] 3R_29390627_SNP [dm6]	C	T	2.700e^-4	0.74	INTRON Ptp99A
2R	1605496	2R_1605496_SNP [dm3] 2R_5717991_SNP [dm6]	C	T	2.701e^-4	0.74	INTRON ap	TF binding site mE1_TFBS_HSA transposable element FlyBase
3L	8322130	3L_8322130_SNP [dm3] 3L_8329030_SNP [dm6]	A	C	2.702e^-4	0.74	DOWNSTREAM CG34461 INTRON CG34462	TF binding site mE1_TFBS_ttk
2L	12527759	2L_12527759_SNP [dm3] 2L_12527759_SNP [dm6]	A	G	2.718e^-4	0.74	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6824899	3L_6824899_SNP [dm3] 3L_6831799_SNP [dm6]	G	A	2.718e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4923541	2L_4923541_SNP [dm3] 2L_4923541_SNP [dm6]	G	T	2.723e^-4	0.74	INTRON hoe1
3R	2577503	3R_2577503_SNP [dm3] 3R_6751781_SNP [dm6]	T	A	2.730e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10122995	3R_10122995_SNP [dm3] 3R_14297273_SNP [dm6]	C	A	2.733e^-4	0.74	UPSTREAM CG12207 INTRON CG12207
X	803593	X_803593_SNP [dm3] X_909560_SNP [dm6]	C	G	2.747e^-4	0.74	UPSTREAM CG43867 INTRON CG43867	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	803658	X_803658_SNP [dm3] X_909625_SNP [dm6]	T	A	2.747e^-4	0.74	UPSTREAM CG43867 INTRON CG43867	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	8322093	3L_8322093_SNP [dm3] 3L_8328993_SNP [dm6]	T	G	2.748e^-4	0.74	DOWNSTREAM CG34461 INTRON CG34462	TF binding site mE1_TFBS_ttk
2R	16493184	2R_16493184_SNP [dm3] 2R_20605679_SNP [dm6]	C	T	2.753e^-4	0.74	SPLICE_SITE_REGION bl UPSTREAM mir-7 INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	11143511	2R_11143511_SNP [dm3] 2R_15256006_SNP [dm6]	T	G	2.764e^-4	0.74	SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad
3L	6824816	3L_6824816_SNP [dm3] 3L_6831716_SNP [dm6]	A	T	2.776e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7643229	2L_7643229_SNP [dm3] 2L_7643229_SNP [dm6]	A	G	2.777e^-4	0.74	UTR_3_PRIME Slob DOWNSTREAM Slob
2R	8777511	2R_8777511_DEL [dm3] 2R_12890006_DEL [dm6]	ACCATAACCA	T	2.782e^-4	0.74	INTRON vg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
2R	5980518	2R_5980518_SNP [dm3] 2R_10093013_SNP [dm6]	A	G	2.782e^-4	0.74	INTRON CG2269
2R	3350755	2R_3350755_SNP [dm3] 2R_7463250_SNP [dm6]	T	A	2.786e^-4	0.74	START_GAINED CG11141 UTR_5_PRIME CG11141 UPSTREAM CG11127 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5649943	2L_5649943_SNP [dm3] 2L_5649943_SNP [dm6]	T	A	2.789e^-4	0.74	INTRON CG31646
3L	6688094	3L_6688094_INS [dm3] 3L_6694994_INS [dm6]	A	AATAATTT	2.801e^-4	0.74	INTRON SP1173
3L	6688098	3L_6688098_SNP [dm3] 3L_6694998_SNP [dm6]	A	T	2.801e^-4	0.74	INTRON SP1173
3L	6688177	3L_6688177_SNP [dm3] 3L_6695077_SNP [dm6]	G	C	2.801e^-4	0.74	INTRON SP1173
2L	3825047	2L_3825047_SNP [dm3] 2L_3825047_SNP [dm6]	T	A	2.805e^-4	0.74	UPSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	14511442	X_14511442_SNP [dm3] X_14617409_SNP [dm6]	C	T	2.844e^-4	0.74	INTRON NetA
3R	10811112	3R_10811112_SNP [dm3] 3R_14985390_SNP [dm6]	T	C	2.849e^-4	0.74	INTERGENIC
3R	10811113	3R_10811113_SNP [dm3] 3R_14985391_SNP [dm6]	G	A	2.849e^-4	0.74	INTERGENIC
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	2.861e^-4	0.74	INTRON CG8861
3L	19449444	3L_19449444_SNP [dm3] 3L_19456344_SNP [dm6]	C	G	2.861e^-4	0.74	DOWNSTREAM CR45434 INTERGENIC
3R	25603243	3R_25603243_DEL [dm3] 3R_29777521_DEL [dm6]	ATAGAT	A	2.877e^-4	0.74	INTRON kay	TF binding site BDTNP1_TFBS_z
2L	10181775	2L_10181775_SNP [dm3] 2L_10181775_SNP [dm6]	A	T	2.881e^-4	0.74	DOWNSTREAM Sur INTERGENIC
2R	12111030	2R_12111030_SNP [dm3] 2R_16223525_SNP [dm6]	G	A	2.883e^-4	0.74	SYNONYMOUS_CODING CG15706 UPSTREAM CG7798 DOWNSTREAM CR43898
3L	1279322	3L_1279322_SNP [dm3] 3L_1279322_SNP [dm6]	G	A	2.887e^-4	0.74	INTRON CG32333
3L	11854082	3L_11854082_SNP [dm3] 3L_11860982_SNP [dm6]	T	G	2.887e^-4	0.74	INTRON CG44837
3R	6747214	3R_6747214_SNP [dm3] 3R_10921492_SNP [dm6]	C	G	2.888e^-4	0.74	INTERGENIC
3L	11879515	3L_11879515_SNP [dm3] 3L_11886415_SNP [dm6]	A	T	2.901e^-4	0.74	DOWNSTREAM CG5897 INTRON CG44837
3L	11879542	3L_11879542_SNP [dm3] 3L_11886442_SNP [dm6]	C	T	2.901e^-4	0.74	DOWNSTREAM CG5897 INTRON CG44837
3L	2075314	3L_2075314_SNP [dm3] 3L_2075314_SNP [dm6]	C	A	2.901e^-4	0.74	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_sens
2L	6391147	2L_6391147_SNP [dm3] 2L_6391147_SNP [dm6]	A	G	2.911e^-4	0.74	SYNONYMOUS_CODING CG42368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18547556	X_18547556_SNP [dm3] X_18653523_SNP [dm6]	C	A	2.912e^-4	0.74	UTR_3_PRIME CG6659 UPSTREAM Ing3	TF binding site BDTNP1_TFBS_dl
2L	10802451	2L_10802451_SNP [dm3] 2L_10802451_SNP [dm6]	T	G	2.915e^-4	0.74	INTRON CR44581
3L	15836135	3L_15836135_SNP [dm3] 3L_15843035_SNP [dm6]	G	A	2.932e^-4	0.74	DOWNSTREAM mir-263b INTRON CG32150
3L	2637369	3L_2637369_SNP [dm3] 3L_2637369_SNP [dm6]	T	C	2.937e^-4	0.74	SYNONYMOUS_CODING MEP-1 UTR_3_PRIME CG42245	TF binding site mE1_TFBS_cad
3R	25882322	3R_25882322_SNP [dm3] 3R_30056600_SNP [dm6]	C	G	2.947e^-4	0.74	UTR_3_PRIME CG15526 UPSTREAM CG7950 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	4381120	3R_4381120_SNP [dm3] 3R_8555398_SNP [dm6]	T	C	2.952e^-4	0.74	INTERGENIC
X	11121457	X_11121457_SNP [dm3] X_11227424_SNP [dm6]	A	T	2.968e^-4	0.74	INTRON CG44422
2L	10035776	2L_10035776_SNP [dm3] 2L_10035776_SNP [dm6]	G	T	2.973e^-4	0.74	INTRON obst-B
2L	10035816	2L_10035816_SNP [dm3] 2L_10035816_SNP [dm6]	T	C	2.973e^-4	0.74	INTRON obst-B
2R	11143645	2R_11143645_SNP [dm3] 2R_15256140_SNP [dm6]	T	A	2.973e^-4	0.74	INTRON scb	TF binding site mE1_TFBS_cad
2R	18312417	2R_18312417_SNP [dm3] 2R_22424912_SNP [dm6]	G	T	2.973e^-4	0.74	NON_SYNONYMOUS_CODING rad50 DOWNSTREAM CG10344	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21422778	3R_21422778_SNP [dm3] 3R_25597056_SNP [dm6]	A	G	2.973e^-4	0.74	INTRON ymp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	4408444	3R_4408444_SNP [dm3] 3R_8582722_SNP [dm6]	C	G	2.973e^-4	0.74	INTRON 5-HT2B
3R	4410382	3R_4410382_SNP [dm3] 3R_8584660_SNP [dm6]	T	C	2.973e^-4	0.74	INTRON 5-HT2B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4422479	3R_4422479_SNP [dm3] 3R_8596757_SNP [dm6]	C	G	2.973e^-4	0.74	INTRON 5-HT2B
X	18660864	X_18660864_SNP [dm3] X_18766831_SNP [dm6]	T	C	2.973e^-4	0.74	INTRON CCKLR-17D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
X	9732275	X_9732275_SNP [dm3] X_9838242_SNP [dm6]	G	A	2.973e^-4	0.74	INTRON CG32698
X	9732292	X_9732292_SNP [dm3] X_9838259_SNP [dm6]	T	C	2.973e^-4	0.74	INTRON CG32698
2R	20605740	2R_20605740_SNP [dm3] 2R_24718217_SNP [dm6]	G	C	2.985e^-4	0.74	INTRON Mid1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4387597	3L_4387597_SNP [dm3] 3L_4387597_SNP [dm6]	A	G	2.994e^-4	0.74	INTRON slow
3L	16648644	3L_16648644_SNP [dm3] 3L_16655544_SNP [dm6]	G	T	2.997e^-4	0.74	INTRON Baldspot
X	9732380	X_9732380_SNP [dm3] X_9838347_SNP [dm6]	G	T	3.004e^-4	0.74	INTRON CG32698
X	9732446	X_9732446_SNP [dm3] X_9838413_SNP [dm6]	G	C	3.004e^-4	0.74	INTRON CG32698
X	9732452	X_9732452_SNP [dm3] X_9838419_SNP [dm6]	G	A	3.004e^-4	0.74	INTRON CG32698
2L	16490195	2L_16490195_INS [dm3] 2L_16490195_INS [dm6]	T	TT	3.014e^-4	0.74	DOWNSTREAM CR44994 & 1 other INTERGENIC
3L	1307305	3L_1307305_SNP [dm3] 3L_1307305_SNP [dm6]	G	A	3.017e^-4	0.74	UTR_5_PRIME CG2469 & 1 other UPSTREAM CG2469 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
X	10912796	X_10912796_SNP [dm3] X_11018763_SNP [dm6]	C	T	3.040e^-4	0.74	INTRON CG42339
3L	11617467	3L_11617467_SNP [dm3] 3L_11624367_SNP [dm6]	T	G	3.042e^-4	0.74	UTR_5_PRIME CG6084 UPSTREAM CG6084 DOWNSTREAM CG6083
X	22365562	X_22365562_SNP [dm3] X_22963726_SNP [dm6]	G	A	3.046e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18584053	3L_18584053_SNP [dm3] 3L_18590953_SNP [dm6]	A	G	3.055e^-4	0.74	DOWNSTREAM CG7271 INTERGENIC	transposable element FlyBase
3L	14373342	3L_14373342_SNP [dm3] 3L_14380242_SNP [dm6]	A	T	3.058e^-4	0.74	INTERGENIC
3L	4049424	3L_4049424_SNP [dm3] 3L_4049424_SNP [dm6]	A	G	3.077e^-4	0.74	INTRON CG1136
X	18596840	X_18596840_SNP [dm3] X_18702807_SNP [dm6]	G	T	3.083e^-4	0.74	INTERGENIC
3L	11045313	3L_11045313_DEL [dm3] 3L_11052213_DEL [dm6]	TGTC	AAA	3.097e^-4	0.74	UPSTREAM CG43693 INTERGENIC
2R	16346869	2R_16346869_SNP [dm3] 2R_20459364_SNP [dm6]	T	G	3.102e^-4	0.74	INTRON CG12484
X	16343064	X_16343064_SNP [dm3] X_16449031_SNP [dm6]	G	T	3.112e^-4	0.74	UPSTREAM Rbp2 & 1 other INTRON Rbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	1264510	X_1264510_SNP [dm3] X_1370477_SNP [dm6]	G	C	3.130e^-4	0.74	UPSTREAM ssx DOWNSTREAM CG14770 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_zfh1
X	4236258	X_4236258_SNP [dm3] X_4342225_SNP [dm6]	C	T	3.146e^-4	0.74	INTRON norpA
2R	12826322	2R_12826322_SNP [dm3] 2R_16938817_SNP [dm6]	A	T	3.147e^-4	0.74	UPSTREAM Pkc53E DOWNSTREAM CG43788 INTRON Pkc53E & 1 other
2R	2997928	2R_2997928_SNP [dm3] 2R_7110423_SNP [dm6]	C	T	3.150e^-4	0.74	INTRON esn
3R	13145689	3R_13145689_SNP [dm3] 3R_17319967_SNP [dm6]	G	A	3.155e^-4	0.74	DOWNSTREAM beat-IIa INTERGENIC
3R	13360239	3R_13360239_INS [dm3] 3R_17534517_INS [dm6]	T	AA	3.156e^-4	0.74	UTR_5_PRIME CG5823 UPSTREAM P5cr-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	3238066	2L_3238066_SNP [dm3] 2L_3238066_SNP [dm6]	C	T	3.169e^-4	0.74	INTERGENIC
2L	7290579	2L_7290579_SNP [dm3] 2L_7290579_SNP [dm6]	T	G	3.202e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7290585	2L_7290585_SNP [dm3] 2L_7290585_SNP [dm6]	G	T	3.202e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10269942	2L_10269942_SNP [dm3] 2L_10269942_SNP [dm6]	G	C	3.210e^-4	0.74	UPSTREAM Mulk DOWNSTREAM CG4957 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4597223	2L_4597223_SNP [dm3] 2L_4597223_SNP [dm6]	G	C	3.220e^-4	0.74	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	12382348	3L_12382348_SNP [dm3] 3L_12389248_SNP [dm6]	A	T	3.222e^-4	0.74	INTRON Ncc69
2L	14695058	2L_14695058_SNP [dm3] 2L_14695058_SNP [dm6]	G	A	3.224e^-4	0.74	INTERGENIC
2L	4932151	2L_4932151_SNP [dm3] 2L_4932151_SNP [dm6]	A	G	3.235e^-4	0.74	UTR_5_PRIME hoe1 DOWNSTREAM hoe2
X	22154574	X_22154574_DEL [dm3] X_22752738_DEL [dm6]	AATTGTTTTTAAA...	A	3.250e^-4	0.74	INTRON CR44997
3L	12508540	3L_12508540_SNP [dm3] 3L_12515440_SNP [dm6]	A	T	3.260e^-4	0.74	UTR_5_PRIME tral UPSTREAM sti & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
X	7494266	X_7494266_SNP [dm3] X_7600233_SNP [dm6]	C	T	3.268e^-4	0.74	INTERGENIC	regulatory region REDfly_CRMs
X	4236257	X_4236257_SNP [dm3] X_4342224_SNP [dm6]	T	C	3.277e^-4	0.74	INTRON norpA
2L	20495587	2L_20495587_SNP [dm3] 2L_20495587_SNP [dm6]	T	C	3.285e^-4	0.74	UTR_3_PRIME CG34007 DOWNSTREAM CG34007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	20495622	2L_20495622_SNP [dm3] 2L_20495622_SNP [dm6]	T	C	3.285e^-4	0.74	UTR_3_PRIME CG34007 DOWNSTREAM CG34007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sbb
3L	11341758	3L_11341758_SNP [dm3] 3L_11348658_SNP [dm6]	T	A	3.292e^-4	0.74	DOWNSTREAM CR45251 INTERGENIC
3R	15069830	3R_15069830_SNP [dm3] 3R_19244108_SNP [dm6]	G	A	3.292e^-4	0.74	SYNONYMOUS_CODING unc79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9338529	2L_9338529_SNP [dm3] 2L_9338529_SNP [dm6]	G	C	3.296e^-4	0.74	SPLICE_SITE_REGION Eaat1 INTRON Eaat1
3R	10851997	3R_10851997_DEL [dm3] 3R_15026275_DEL [dm6]	AATCCTTTGA	A	3.329e^-4	0.74	INTERGENIC
X	3301608	X_3301608_SNP [dm3] X_3407575_SNP [dm6]	G	A	3.348e^-4	0.74	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	4341148	3R_4341148_SNP [dm3] 3R_8515426_SNP [dm6]	G	A	3.352e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16341426	X_16341426_SNP [dm3] X_16447393_SNP [dm6]	G	T	3.353e^-4	0.74	UPSTREAM eIF-2alpha DOWNSTREAM CG34015 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12696493	3L_12696493_SNP [dm3] 3L_12703393_SNP [dm6]	A	C	3.368e^-4	0.74	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14905982	X_14905982_SNP [dm3] X_15011949_SNP [dm6]	C	T	3.407e^-4	0.74	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16400515	2R_16400515_SNP [dm3] 2R_20513010_SNP [dm6]	A	G	3.417e^-4	0.74	DOWNSTREAM CR44649 INTRON CG13426
2R	16400529	2R_16400529_SNP [dm3] 2R_20513024_SNP [dm6]	T	A	3.417e^-4	0.74	DOWNSTREAM CR44649 INTRON CG13426
3L	10733111	3L_10733111_SNP [dm3] 3L_10740011_SNP [dm6]	A	T	3.427e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	16624995	2R_16624995_SNP [dm3] 2R_20737490_SNP [dm6]	C	T	3.438e^-4	0.74	INTRON dpr
3L	8363088	3L_8363088_SNP [dm3] 3L_8369988_SNP [dm6]	T	C	3.439e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23307798	3R_23307798_SNP [dm3] 3R_27482076_SNP [dm6]	T	A	3.441e^-4	0.74	UTR_3_PRIME Cyp6a18
2R	6002214	2R_6002214_SNP [dm3] 2R_10114709_SNP [dm6]	C	T	3.447e^-4	0.74	INTRON Pfk
2L	12527578	2L_12527578_SNP [dm3] 2L_12527578_SNP [dm6]	C	A	3.451e^-4	0.74	INTRON bun	TF binding site BDTNP1_TFBS_dl
2L	12527581	2L_12527581_SNP [dm3] 2L_12527581_SNP [dm6]	A	G	3.451e^-4	0.74	INTRON bun	TF binding site BDTNP1_TFBS_dl
3L	1360120	3L_1360120_SNP [dm3] 3L_1360120_SNP [dm6]	C	G	3.482e^-4	0.74	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17877895	3R_17877895_SNP [dm3] 3R_22052173_SNP [dm6]	T	A	3.485e^-4	0.74	INTRON how	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	13473665	3R_13473665_SNP [dm3] 3R_17647943_SNP [dm6]	T	C	3.491e^-4	0.74	UTR_5_PRIME CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	16196450	3L_16196450_SNP [dm3] 3L_16203350_SNP [dm6]	C	G	3.491e^-4	0.74	INTERGENIC
2R	16346779	2R_16346779_SNP [dm3] 2R_20459274_SNP [dm6]	T	A	3.494e^-4	0.74	INTRON CG12484
3L	13593995	3L_13593995_SNP [dm3] 3L_13600895_SNP [dm6]	A	C	3.496e^-4	0.74	INTRON bru-3
3L	12383451	3L_12383451_SNP [dm3] 3L_12390351_SNP [dm6]	T	C	3.500e^-4	0.74	INTRON Ncc69
3R	11781210	3R_11781210_INS [dm3] 3R_15955488_INS [dm6]	T	TCT	3.509e^-4	0.74	INTRON Sap47
3R	13471268	3R_13471268_SNP [dm3] 3R_17645546_SNP [dm6]	G	C	3.515e^-4	0.74	UPSTREAM tRNA:CR31578 & 2 others DOWNSTREAM CG43175 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5998197	3L_5998197_SNP [dm3] 3L_6005097_SNP [dm6]	C	A	3.538e^-4	0.74	INTRON PVRAP	TF binding site mE1_TFBS_cad
3R	25547001	3R_25547001_SNP [dm3] 3R_29721279_SNP [dm6]	C	T	3.545e^-4	0.74	SYNONYMOUS_CODING CG15506
2L	19688692	2L_19688692_SNP [dm3] 2L_19688692_SNP [dm6]	T	A	3.552e^-4	0.74	INTRON Lar	TF binding site BDTNP1_TFBS_twi
2L	19688694	2L_19688694_SNP [dm3] 2L_19688694_SNP [dm6]	T	G	3.552e^-4	0.74	INTRON Lar	TF binding site BDTNP1_TFBS_twi
2L	5472495	2L_5472495_SNP [dm3] 2L_5472495_SNP [dm6]	T	C	3.565e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	6747207	3R_6747207_SNP [dm3] 3R_10921485_SNP [dm6]	T	A	3.567e^-4	0.74	INTERGENIC
3L	10923226	3L_10923226_SNP [dm3] 3L_10930126_SNP [dm6]	C	T	3.578e^-4	0.74	INTERGENIC
3L	13594158	3L_13594158_SNP [dm3] 3L_13601058_SNP [dm6]	A	G	3.606e^-4	0.74	INTRON bru-3
3L	16658020	3L_16658020_DEL [dm3] 3L_16664920_DEL [dm6]	AAAA	A	3.608e^-4	0.74	INTRON Galphaf
2R	16996570	2R_16996570_SNP [dm3] 2R_21109065_SNP [dm6]	T	G	3.620e^-4	0.74	INTRON ktub
3R	10267064	3R_10267064_SNP [dm3] 3R_14441342_SNP [dm6]	G	T	3.633e^-4	0.74	INTRON cv-c
2R	16346802	2R_16346802_SNP [dm3] 2R_20459297_SNP [dm6]	A	C	3.634e^-4	0.74	INTRON CG12484
2R	16346829	2R_16346829_SNP [dm3] 2R_20459324_SNP [dm6]	A	G	3.634e^-4	0.74	INTRON CG12484
2R	16346835	2R_16346835_SNP [dm3] 2R_20459330_SNP [dm6]	C	T	3.634e^-4	0.74	INTRON CG12484
2R	14184864	2R_14184864_SNP [dm3] 2R_18297359_SNP [dm6]	T	C	3.648e^-4	0.74	SPLICE_SITE_REGION CG18538 UPSTREAM CG18539 DOWNSTREAM CG18537 INTRON sbb & 1 other
3L	11548825	3L_11548825_SNP [dm3] 3L_11555725_SNP [dm6]	A	T	3.652e^-4	0.74	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18700584	X_18700584_SNP [dm3] X_18806551_SNP [dm6]	C	T	3.665e^-4	0.74	UPSTREAM CG7058 & 1 other DOWNSTREAM Pk17E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11858701	2L_11858701_SNP [dm3] 2L_11858701_SNP [dm6]	C	T	3.669e^-4	0.74	INTRON Pde1c
2L	11858779	2L_11858779_SNP [dm3] 2L_11858779_SNP [dm6]	T	A	3.669e^-4	0.74	INTRON Pde1c
2R	18361703	2R_18361703_SNP [dm3] 2R_22474198_SNP [dm6]	T	A	3.673e^-4	0.74	INTRON CG45062
2R	18361706	2R_18361706_SNP [dm3] 2R_22474201_SNP [dm6]	T	A	3.673e^-4	0.74	INTRON CG45062
2L	9428753	2L_9428753_SNP [dm3] 2L_9428753_SNP [dm6]	T	G	3.677e^-4	0.74	UTR_3_PRIME FucTB DOWNSTREAM FucTB & 2 others
2L	9428755	2L_9428755_SNP [dm3] 2L_9428755_SNP [dm6]	A	G	3.677e^-4	0.74	UTR_3_PRIME FucTB DOWNSTREAM FucTB & 2 others
2L	9428834	2L_9428834_SNP [dm3] 2L_9428834_SNP [dm6]	G	A	3.677e^-4	0.74	NON_SYNONYMOUS_CODING FucTB DOWNSTREAM Fbp2 & 1 other
2L	9428884	2L_9428884_SNP [dm3] 2L_9428884_SNP [dm6]	A	T	3.677e^-4	0.74	SYNONYMOUS_CODING FucTB DOWNSTREAM Fbp2 & 1 other
2L	14454884	2L_14454884_SNP [dm3] 2L_14454884_SNP [dm6]	T	C	3.691e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	25882843	3R_25882843_SNP [dm3] 3R_30057121_SNP [dm6]	T	G	3.695e^-4	0.74	START_GAINED CG7950 UTR_5_PRIME CG7950 DOWNSTREAM CG15526 INTRON CG7950 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	5658904	3R_5658904_SNP [dm3] 3R_9833182_SNP [dm6]	C	T	3.728e^-4	0.74	INTRON Teh1	TF binding site BDTNP1_TFBS_dl
3L	5192475	3L_5192475_SNP [dm3] 3L_5199375_SNP [dm6]	A	C	3.735e^-4	0.74	INTRON shep
X	18255489	X_18255489_SNP [dm3] X_18361456_SNP [dm6]	G	A	3.737e^-4	0.74	SYNONYMOUS_CODING CG6106
2R	6014808	2R_6014808_SNP [dm3] 2R_10127303_SNP [dm6]	T	A	3.747e^-4	0.74	NON_SYNONYMOUS_CODING gem
3R	25597169	3R_25597169_SNP [dm3] 3R_29771447_SNP [dm6]	T	C	3.753e^-4	0.74	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5615704	3L_5615704_SNP [dm3] 3L_5622604_SNP [dm6]	A	C	3.757e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	9850037	3L_9850037_SNP [dm3] 3L_9856937_SNP [dm6]	C	T	3.767e^-4	0.74	DOWNSTREAM CG10809 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	9850057	3L_9850057_SNP [dm3] 3L_9856957_SNP [dm6]	T	C	3.767e^-4	0.74	DOWNSTREAM CG10809 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	10499574	3R_10499574_SNP [dm3] 3R_14673852_SNP [dm6]	T	C	3.772e^-4	0.74	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi
2L	14730933	2L_14730933_SNP [dm3] 2L_14730933_SNP [dm6]	A	T	3.773e^-4	0.74	UPSTREAM CG42685 INTERGENIC
2L	14731096	2L_14731096_SNP [dm3] 2L_14731096_SNP [dm6]	T	A	3.773e^-4	0.74	UPSTREAM CG42685 INTERGENIC
3R	14607643	3R_14607643_SNP [dm3] 3R_18781921_SNP [dm6]	C	T	3.784e^-4	0.74	INTRON CG7720
2R	15274487	2R_15274487_SNP [dm3] 2R_19386982_SNP [dm6]	C	T	3.802e^-4	0.74	INTRON CG10081
2R	15274490	2R_15274490_SNP [dm3] 2R_19386985_SNP [dm6]	G	T	3.802e^-4	0.74	INTRON CG10081
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	3.814e^-4	0.74	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	3.814e^-4	0.74	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
2R	10820197	2R_10820197_SNP [dm3] 2R_14932692_SNP [dm6]	T	A	3.828e^-4	0.74	UPSTREAM CG12853 INTRON CG10253
2L	3387669	2L_3387669_SNP [dm3] 2L_3387669_SNP [dm6]	A	G	3.828e^-4	0.74	NON_SYNONYMOUS_CODING Sfp23F UPSTREAM CR45301 DOWNSTREAM CG42460
2L	11574967	2L_11574967_SNP [dm3] 2L_11574967_SNP [dm6]	C	A	3.830e^-4	0.74	INTERGENIC
X	21081580	X_21081580_SNP [dm3] X_21210553_SNP [dm6]	A	G	3.842e^-4	0.74	INTRON CG32521
2R	12289145	2R_12289145_SNP [dm3] 2R_16401640_SNP [dm6]	T	A	3.853e^-4	0.74	INTRON Sema-2b
3R	10852016	3R_10852016_SNP [dm3] 3R_15026294_SNP [dm6]	T	A	3.854e^-4	0.74	INTERGENIC
X	6503382	X_6503382_SNP [dm3] X_6609349_SNP [dm6]	T	A	3.856e^-4	0.74	INTRON pigs
2L	7154262	2L_7154262_SNP [dm3] 2L_7154262_SNP [dm6]	G	A	3.856e^-4	0.74	INTRON Pvf3
2L	10799437	2L_10799437_SNP [dm3] 2L_10799437_SNP [dm6]	A	G	3.861e^-4	0.74	INTRON CG31869
3L	3735368	3L_3735368_SNP [dm3] 3L_3735368_SNP [dm6]	C	T	3.870e^-4	0.74	INTRON CG32264
X	3819821	X_3819821_SNP [dm3] X_3925788_SNP [dm6]	C	A	3.872e^-4	0.74	INTRON CG42541
X	16338819	X_16338819_SNP [dm3] X_16444786_SNP [dm6]	C	A	3.884e^-4	0.74	UTR_3_PRIME rngo DOWNSTREAM eIF-2alpha	TF binding site mE1_TFBS_cad
3L	1692241	3L_1692241_SNP [dm3] 3L_1692241_SNP [dm6]	T	C	3.887e^-4	0.74	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18356895	2R_18356895_SNP [dm3] 2R_22469390_SNP [dm6]	G	A	3.888e^-4	0.74	INTRON CG10384	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14389452	3R_14389452_SNP [dm3] 3R_18563730_SNP [dm6]	T	A	3.903e^-4	0.74	DOWNSTREAM CG43210 & 1 other INTERGENIC
3L	11597825	3L_11597825_SNP [dm3] 3L_11604725_SNP [dm6]	G	T	3.919e^-4	0.74	UTR_3_PRIME CG7368 DOWNSTREAM CG6091
3L	11596613	3L_11596613_SNP [dm3] 3L_11603513_SNP [dm6]	A	G	3.924e^-4	0.74	INTRON CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3509859	3R_3509859_SNP [dm3] 3R_7684137_SNP [dm6]	A	C	3.954e^-4	0.74	INTRON Nlg1
2L	4588031	2L_4588031_SNP [dm3] 2L_4588031_SNP [dm6]	A	G	3.956e^-4	0.74	INTRON dp
3L	16330220	3L_16330220_SNP [dm3] 3L_16337120_SNP [dm6]	T	A	3.960e^-4	0.74	INTERGENIC
3R	15061370	3R_15061370_INS [dm3] 3R_19235648_INS [dm6]	T	TG	3.972e^-4	0.74	INTRON unc79
2L	3767976	2L_3767976_SNP [dm3] 2L_3767976_SNP [dm6]	C	A	3.980e^-4	0.74	SYNONYMOUS_CODING CG43707 DOWNSTREAM mir-1004
3R	8564726	3R_8564726_SNP [dm3] 3R_12739004_SNP [dm6]	G	A	3.992e^-4	0.74	UPSTREAM CG5724 INTERGENIC
3R	17109339	3R_17109339_SNP [dm3] 3R_21283617_SNP [dm6]	G	T	3.995e^-4	0.74	NON_SYNONYMOUS_CODING CG17298 INTRON SIFaR	TF binding site mE1_TFBS_cad
3R	17109568	3R_17109568_SNP [dm3] 3R_21283846_SNP [dm6]	G	T	3.995e^-4	0.74	SYNONYMOUS_CODING CG17298 INTRON SIFaR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19726701	2R_19726701_SNP [dm3] 2R_23839178_SNP [dm6]	C	T	3.997e^-4	0.74	UTR_3_PRIME CG5549 DOWNSTREAM snoRNA:Psi18S-176
3L	13487113	3L_13487113_SNP [dm3] 3L_13494013_SNP [dm6]	A	T	3.998e^-4	0.74	INTRON Tgi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5641582	2R_5641582_DEL [dm3] 2R_9754077_DEL [dm6]	CCTGACTGCTCCTGGTTGCT...	C	4.005e^-4	0.74	INTRON trpl
2L	9424663	2L_9424663_SNP [dm3] 2L_9424663_SNP [dm6]	A	T	4.017e^-4	0.74	SYNONYMOUS_CODING Mco1	TF binding site mE1_TFBS_sens
3R	10122996	3R_10122996_SNP [dm3] 3R_14297274_SNP [dm6]	A	G	4.019e^-4	0.74	UPSTREAM CG12207 INTRON CG12207
3R	5096095	3R_5096095_SNP [dm3] 3R_9270373_SNP [dm6]	T	C	4.038e^-4	0.74	DOWNSTREAM Vps16A INTERGENIC
2R	17678455	2R_17678455_SNP [dm3] 2R_21790950_SNP [dm6]	T	G	4.041e^-4	0.74	NON_SYNONYMOUS_CODING lox2
2L	9431224	2L_9431224_SNP [dm3] 2L_9431224_SNP [dm6]	A	C	4.042e^-4	0.74	UPSTREAM scat & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10181727	2L_10181727_SNP [dm3] 2L_10181727_SNP [dm6]	A	C	4.047e^-4	0.74	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
3R	6299585	3R_6299585_SNP [dm3] 3R_10473863_SNP [dm6]	G	T	4.049e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15014854	3R_15014854_SNP [dm3] 3R_19189132_SNP [dm6]	A	C	4.052e^-4	0.74	INTRON CG31475
2L	2836985	2L_2836985_SNP [dm3] 2L_2836985_SNP [dm6]	G	A	4.054e^-4	0.74	INTRON CG3119
2L	13743754	2L_13743754_SNP [dm3] 2L_13743754_SNP [dm6]	A	G	4.077e^-4	0.74	INTERGENIC
2L	5412388	2L_5412388_SNP [dm3] 2L_5412388_SNP [dm6]	C	T	4.077e^-4	0.74	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5412395	2L_5412395_SNP [dm3] 2L_5412395_SNP [dm6]	G	A	4.077e^-4	0.74	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4317869	2L_4317869_SNP [dm3] 2L_4317869_SNP [dm6]	A	T	4.078e^-4	0.74	INTRON tutl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19516321	2R_19516321_DEL [dm3] 2R_23628798_DEL [dm6]	GG	G	4.089e^-4	0.74	INTERGENIC
2R	17260895	2R_17260895_SNP [dm3] 2R_21373390_SNP [dm6]	T	C	4.103e^-4	0.74	INTRON cv-2	TF binding site BDTNP1_TFBS_twi
X	20558998	X_20558998_SNP [dm3] X_20687971_SNP [dm6]	A	T	4.106e^-4	0.74	DOWNSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	1186178	2R_1186178_SNP [dm3] 2R_5298673_SNP [dm6]	G	A	4.109e^-4	0.74	INTERGENIC	transposable element FlyBase
X	14904432	X_14904432_SNP [dm3] X_15010399_SNP [dm6]	G	A	4.109e^-4	0.74	UTR_3_PRIME hiw DOWNSTREAM hiw & 1 other	TF binding site BDTNP1_TFBS_dl
2R	13859582	2R_13859582_SNP [dm3] 2R_17972077_SNP [dm6]	G	A	4.111e^-4	0.74	INTERGENIC
X	19868563	X_19868563_INS [dm3] X_19974530_INS [dm6]	A	ACACAGTGT	4.115e^-4	0.74	INTERGENIC
3R	25406654	3R_25406654_SNP [dm3] 3R_29580932_SNP [dm6]	A	T	4.117e^-4	0.74	INTERGENIC
3L	11548847	3L_11548847_SNP [dm3] 3L_11555747_SNP [dm6]	A	G	4.118e^-4	0.74	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10714501	2R_10714501_SNP [dm3] 2R_14826996_SNP [dm6]	G	A	4.120e^-4	0.74	INTERGENIC
2R	6933213	2R_6933213_SNP [dm3] 2R_11045708_SNP [dm6]	T	A	4.122e^-4	0.74	INTRON luna
3L	2020903	3L_2020903_SNP [dm3] 3L_2020903_SNP [dm6]	G	A	4.127e^-4	0.74	SYNONYMOUS_CODING CG42357
3L	10733368	3L_10733368_SNP [dm3] 3L_10740268_SNP [dm6]	A	G	4.132e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	8486045	3L_8486045_SNP [dm3] 3L_8492945_SNP [dm6]	A	G	4.132e^-4	0.74	INTRON CG43163	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	7079206	2R_7079206_SNP [dm3] 2R_11191701_SNP [dm6]	T	C	4.138e^-4	0.74	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9338570	2L_9338570_SNP [dm3] 2L_9338570_SNP [dm6]	G	T	4.141e^-4	0.74	INTRON Eaat1
X	13595462	X_13595462_SNP [dm3] X_13701429_SNP [dm6]	T	G	4.147e^-4	0.74	INTRON NnaD & 1 other
2R	6109774	2R_6109774_SNP [dm3] 2R_10222269_SNP [dm6]	T	A	4.152e^-4	0.74	INTRON Hr46 & 1 other
2R	6109808	2R_6109808_SNP [dm3] 2R_10222303_SNP [dm6]	A	G	4.152e^-4	0.74	INTRON Hr46 & 1 other
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	4.152e^-4	0.74	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
X	15164772	X_15164772_SNP [dm3] X_15270739_SNP [dm6]	T	C	4.156e^-4	0.74	DOWNSTREAM CG9106 INTERGENIC
3R	19038237	3R_19038237_DEL [dm3] 3R_23212515_DEL [dm6]	AA	C	4.159e^-4	0.74	INTRON cnc	TF binding site BDTNP1_TFBS_dl
2L	7539289	2L_7539289_SNP [dm3] 2L_7539289_SNP [dm6]	T	C	4.192e^-4	0.74	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	3651860	3L_3651860_SNP [dm3] 3L_3651860_SNP [dm6]	T	G	4.192e^-4	0.74	INTRON dar1
2L	10181600	2L_10181600_SNP [dm3] 2L_10181600_SNP [dm6]	C	G	4.195e^-4	0.74	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv transposable element FlyBase
3L	4721797	3L_4721797_SNP [dm3] 3L_4721797_SNP [dm6]	T	C	4.203e^-4	0.74	INTRON RhoGEF64C
2L	7590299	2L_7590299_SNP [dm3] 2L_7590299_SNP [dm6]	A	G	4.204e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	4391421	2R_4391421_SNP [dm3] 2R_8503916_SNP [dm6]	G	T	4.219e^-4	0.74	INTRON mtt
2L	10802556	2L_10802556_SNP [dm3] 2L_10802556_SNP [dm6]	T	G	4.228e^-4	0.74	INTRON CR44581
3L	14586611	3L_14586611_SNP [dm3] 3L_14593511_SNP [dm6]	G	A	4.235e^-4	0.74	INTRON HGTX
3L	11638534	3L_11638534_SNP [dm3] 3L_11645434_SNP [dm6]	A	G	4.247e^-4	0.74	DOWNSTREAM RIOK1 INTRON CG6071
3L	13118125	3L_13118125_SNP [dm3] 3L_13125025_SNP [dm6]	G	C	4.264e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_sens
2R	12764008	2R_12764008_SNP [dm3] 2R_16876503_SNP [dm6]	A	C	4.266e^-4	0.74	SPLICE_SITE_REGION CG8910 INTRON CG8910
2R	10612749	2R_10612749_SNP [dm3] 2R_14725244_SNP [dm6]	G	A	4.268e^-4	0.74	INTERGENIC
3L	13310275	3L_13310275_SNP [dm3] 3L_13317175_SNP [dm6]	C	A	4.275e^-4	0.74	INTERGENIC
2R	6016751	2R_6016751_SNP [dm3] 2R_10129246_SNP [dm6]	A	T	4.290e^-4	0.74	INTRON gem	TF binding site mE1_TFBS_HSA
2R	18295899	2R_18295899_SNP [dm3] 2R_22408394_SNP [dm6]	G	C	4.291e^-4	0.74	UTR_3_PRIME CG6044 UPSTREAM ventrally-expressed-protein-D DOWNSTREAM qkr58E-3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	6355104	3R_6355104_SNP [dm3] 3R_10529382_SNP [dm6]	G	T	4.297e^-4	0.74	INTRON hth
3R	14389440	3R_14389440_SNP [dm3] 3R_18563718_SNP [dm6]	G	A	4.329e^-4	0.74	DOWNSTREAM CG43210 & 1 other INTERGENIC
2L	3144022	2L_3144022_SNP [dm3] 2L_3144022_SNP [dm6]	A	C	4.330e^-4	0.74	DOWNSTREAM CG12400 INTRON toc
3R	26476642	3R_26476642_SNP [dm3] 3R_30650920_SNP [dm6]	C	T	4.335e^-4	0.74	DOWNSTREAM CG34433 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18849034	3L_18849034_SNP [dm3] 3L_18855934_SNP [dm6]	T	A	4.337e^-4	0.74	UPSTREAM CR45388 INTERGENIC
3L	14940569	3L_14940569_SNP [dm3] 3L_14947469_SNP [dm6]	A	T	4.347e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12970237	3R_12970237_INS [dm3] 3R_17144515_INS [dm6]	T	TG	4.351e^-4	0.74	UTR_3_PRIME m-cup DOWNSTREAM m-cup
2L	5412912	2L_5412912_SNP [dm3] 2L_5412912_SNP [dm6]	A	C	4.386e^-4	0.74	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5412915	2L_5412915_SNP [dm3] 2L_5412915_SNP [dm6]	C	T	4.386e^-4	0.74	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11675041	3L_11675041_SNP [dm3] 3L_11681941_SNP [dm6]	A	G	4.394e^-4	0.74	UPSTREAM TfIIEalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	7890887	3L_7890887_SNP [dm3] 3L_7897787_SNP [dm6]	A	G	4.394e^-4	0.74	SYNONYMOUS_CODING pbl
3L	2808982	3L_2808982_SNP [dm3] 3L_2808982_SNP [dm6]	T	G	4.396e^-4	0.74	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	16400509	2R_16400509_SNP [dm3] 2R_20513004_SNP [dm6]	C	T	4.404e^-4	0.74	SPLICE_SITE_REGION CG13426 SYNONYMOUS_CODING CG13426 DOWNSTREAM CR44649
3L	13276904	3L_13276904_SNP [dm3] 3L_13283804_SNP [dm6]	G	T	4.408e^-4	0.74	DOWNSTREAM CR43146 EXON CR43913
2L	5158849	2L_5158849_SNP [dm3] 2L_5158849_SNP [dm6]	G	A	4.422e^-4	0.74	NON_SYNONYMOUS_CODING Msp300 DOWNSTREAM Msp300 INTRON Msp300
3R	10165866	3R_10165866_SNP [dm3] 3R_14340144_SNP [dm6]	G	T	4.439e^-4	0.74	INTRON NK7.1
3L	16289436	3L_16289436_SNP [dm3] 3L_16296336_SNP [dm6]	G	A	4.444e^-4	0.74	UPSTREAM CG4962 INTERGENIC
2L	2653929	2L_2653929_SNP [dm3] 2L_2653929_SNP [dm6]	T	C	4.446e^-4	0.74	UPSTREAM Or23a DOWNSTREAM Prosbeta4R1 INTERGENIC
2L	6138196	2L_6138196_INS [dm3] 2L_6138196_INS [dm6]	A	AA	4.452e^-4	0.74	DOWNSTREAM CR44824 INTERGENIC
3L	8485661	3L_8485661_DEL [dm3] 3L_8492561_DEL [dm6]	GG	G	4.459e^-4	0.74	INTRON CG43163
X	16654085	X_16654085_SNP [dm3] X_16760052_SNP [dm6]	T	G	4.468e^-4	0.74	INTRON if
X	16654090	X_16654090_SNP [dm3] X_16760057_SNP [dm6]	T	G	4.468e^-4	0.74	INTRON if
2R	20722957	2R_20722957_SNP [dm3] 2R_24835434_SNP [dm6]	C	T	4.474e^-4	0.74	UTR_3_PRIME Dll DOWNSTREAM Dll
3R	11136694	3R_11136694_SNP [dm3] 3R_15310972_SNP [dm6]	G	C	4.489e^-4	0.74	UTR_5_PRIME Tm2 INTRON Tm2	regulatory region REDfly_CRMs
2L	13735514	2L_13735514_SNP [dm3] 2L_13735514_SNP [dm6]	C	T	4.491e^-4	0.74	UPSTREAM CG31813 INTERGENIC
2L	2853589	2L_2853589_SNP [dm3] 2L_2853589_SNP [dm6]	T	C	4.491e^-4	0.74	UTR_5_PRIME CG3104
2R	16186636	2R_16186636_SNP [dm3] 2R_20299131_SNP [dm6]	C	A	4.506e^-4	0.74	INTERGENIC
3L	1928871	3L_1928871_SNP [dm3] 3L_1928871_SNP [dm6]	G	A	4.529e^-4	0.74	INTRON Dbx	TF binding site BDTNP1_TFBS_dl
X	9663250	X_9663250_SNP [dm3] X_9769217_SNP [dm6]	T	C	4.543e^-4	0.74	INTERGENIC
X	9663251	X_9663251_SNP [dm3] X_9769218_SNP [dm6]	G	T	4.543e^-4	0.74	INTERGENIC
2R	6016764	2R_6016764_SNP [dm3] 2R_10129259_SNP [dm6]	C	A	4.545e^-4	0.74	INTRON gem	TF binding site mE1_TFBS_HSA
3L	2637374	3L_2637374_SNP [dm3] 3L_2637374_SNP [dm6]	G	T	4.557e^-4	0.74	NON_SYNONYMOUS_CODING MEP-1 UTR_3_PRIME CG42245	TF binding site mE1_TFBS_cad
X	8365190	X_8365190_SNP [dm3] X_8471157_SNP [dm6]	G	A	4.560e^-4	0.74	INTRON CG33223 & 1 other
2R	19512423	2R_19512423_DEL [dm3] 2R_23624900_DEL [dm6]	CTGTAGCAAC	T	4.572e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9814003	3R_9814003_SNP [dm3] 3R_13988281_SNP [dm6]	G	A	4.602e^-4	0.74	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	2789390	2R_2789390_SNP [dm3] 2R_6901885_SNP [dm6]	C	T	4.604e^-4	0.74	INTRON CG30158
3R	16773725	3R_16773725_SNP [dm3] 3R_20948003_SNP [dm6]	T	C	4.606e^-4	0.74	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_zfh1
3R	16773807	3R_16773807_SNP [dm3] 3R_20948085_SNP [dm6]	C	A	4.606e^-4	0.74	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_zfh1
3L	953392	3L_953392_SNP [dm3] 3L_953392_SNP [dm6]	A	C	4.609e^-4	0.74	INTRON Glut1
3L	9737402	3L_9737402_SNP [dm3] 3L_9744302_SNP [dm6]	C	T	4.610e^-4	0.74	UPSTREAM CG42268 INTRON CG42268 EXON CR44348	TF binding site BDTNP1_TFBS_dl
3L	9737406	3L_9737406_SNP [dm3] 3L_9744306_SNP [dm6]	T	A	4.610e^-4	0.74	UPSTREAM CG42268 INTRON CG42268 EXON CR44348	TF binding site BDTNP1_TFBS_dl
3L	7811500	3L_7811500_SNP [dm3] 3L_7818400_SNP [dm6]	G	T	4.616e^-4	0.74	INTRON Pdp1
2R	15542821	2R_15542821_SNP [dm3] 2R_19655316_SNP [dm6]	A	T	4.623e^-4	0.74	DOWNSTREAM CR44214 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	8897832	2R_8897832_SNP [dm3] 2R_13010327_SNP [dm6]	A	G	4.640e^-4	0.74	INTERGENIC
3L	7337504	3L_7337504_DEL [dm3] 3L_7344404_DEL [dm6]	CCC	C	4.644e^-4	0.74	UPSTREAM CG8596 INTRON CG8596	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10606676	3L_10606676_SNP [dm3] 3L_10613576_SNP [dm6]	A	C	4.649e^-4	0.74	INTERGENIC
X	6604525	X_6604525_INS [dm3] X_6710492_INS [dm6]	T	TCT	4.649e^-4	0.74	INTRON CG14441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11650223	3L_11650223_SNP [dm3] 3L_11657123_SNP [dm6]	A	G	4.650e^-4	0.74	DOWNSTREAM mir-274 INTRON CG32085
X	21931022	X_21931022_SNP [dm3] X_22529186_SNP [dm6]	A	C	4.650e^-4	0.74	SYNONYMOUS_CODING CG17600 UPSTREAM S6kII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	21283237	X_21283237_DEL [dm3] X_21412210_DEL [dm6]	GTTTGTCGATGG...	G	4.666e^-4	0.74	INTERGENIC
2L	17417977	2L_17417977_SNP [dm3] 2L_17417977_SNP [dm6]	A	T	4.674e^-4	0.74	INTRON Dif	TF binding site mE1_TFBS_cad
3R	14389436	3R_14389436_SNP [dm3] 3R_18563714_SNP [dm6]	A	C	4.678e^-4	0.74	DOWNSTREAM CG43210 & 1 other INTERGENIC
2R	7111611	2R_7111611_SNP [dm3] 2R_11224106_SNP [dm6]	C	T	4.691e^-4	0.74	INTRON CG7737	TF binding site BDTNP1_TFBS_twi
2R	7111615	2R_7111615_SNP [dm3] 2R_11224110_SNP [dm6]	C	A	4.691e^-4	0.74	INTRON CG7737	TF binding site BDTNP1_TFBS_twi
3L	16932162	3L_16932162_SNP [dm3] 3L_16939062_SNP [dm6]	A	T	4.697e^-4	0.74	UPSTREAM CG13022 DOWNSTREAM Cpr73D INTERGENIC
3L	16932210	3L_16932210_SNP [dm3] 3L_16939110_SNP [dm6]	G	A	4.697e^-4	0.74	UTR_3_PRIME Cpr73D UPSTREAM CG13022	TF binding site mE1_TFBS_chinmo
3L	16932401	3L_16932401_SNP [dm3] 3L_16939301_SNP [dm6]	A	G	4.697e^-4	0.74	SYNONYMOUS_CODING Cpr73D UPSTREAM CG13022	TF binding site mE1_TFBS_chinmo
3L	11101095	3L_11101095_SNP [dm3] 3L_11107995_SNP [dm6]	T	A	4.739e^-4	0.74	UPSTREAM CG12522 & 1 other DOWNSTREAM CG34012 INTERGENIC
X	20026366	X_20026366_SNP [dm3] X_20132333_SNP [dm6]	G	C	4.740e^-4	0.74	UPSTREAM CG42582 INTERGENIC
3L	13310271	3L_13310271_SNP [dm3] 3L_13317171_SNP [dm6]	C	T	4.744e^-4	0.74	INTERGENIC
2R	13413691	2R_13413691_SNP [dm3] 2R_17526186_SNP [dm6]	C	A	4.763e^-4	0.74	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14739161	3R_14739161_INS [dm3] 3R_18913439_INS [dm6]	A	ACATACATA	4.763e^-4	0.74	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3L	3790524	3L_3790524_SNP [dm3] 3L_3790524_SNP [dm6]	A	G	4.765e^-4	0.74	UPSTREAM CG32266 INTRON CG32264	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4747303	2L_4747303_SNP [dm3] 2L_4747303_SNP [dm6]	A	G	4.767e^-4	0.74	INTRON CG15630
2L	10704084	2L_10704084_SNP [dm3] 2L_10704084_SNP [dm6]	A	G	4.773e^-4	0.74	NON_SYNONYMOUS_CODING CG6415 INTRON Lip2
3L	16050413	3L_16050413_SNP [dm3] 3L_16057313_SNP [dm6]	C	T	4.773e^-4	0.74	INTRON Mbs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17760427	2R_17760427_DEL [dm3] 2R_21872922_DEL [dm6]	AA	A	4.777e^-4	0.74	INTRON Fili	TF binding site mE1_TFBS_D
2R	17760464	2R_17760464_SNP [dm3] 2R_21872959_SNP [dm6]	T	C	4.777e^-4	0.74	INTRON Fili	TF binding site mE1_TFBS_D
3R	6286954	3R_6286954_SNP [dm3] 3R_10461232_SNP [dm6]	C	T	4.779e^-4	0.74	EXON CR44939	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	14423301	3R_14423301_SNP [dm3] 3R_18597579_SNP [dm6]	C	G	4.789e^-4	0.74	NON_SYNONYMOUS_CODING CG14304 INTRON qin	TF binding site mE1_TFBS_chinmo
2R	11422237	2R_11422237_SNP [dm3] 2R_15534732_SNP [dm6]	G	T	4.797e^-4	0.74	INTRON CG30471
2L	14695013	2L_14695013_SNP [dm3] 2L_14695013_SNP [dm6]	A	T	4.816e^-4	0.74	INTERGENIC
3L	4406793	3L_4406793_SNP [dm3] 3L_4406793_SNP [dm6]	A	C	4.843e^-4	0.74	UPSTREAM DOR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	4406795	3L_4406795_SNP [dm3] 3L_4406795_SNP [dm6]	G	A	4.843e^-4	0.74	UPSTREAM DOR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	4406803	3L_4406803_SNP [dm3] 3L_4406803_SNP [dm6]	C	A	4.843e^-4	0.74	UPSTREAM DOR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	16864727	3L_16864727_SNP [dm3] 3L_16871627_SNP [dm6]	A	T	4.864e^-4	0.74	INTRON Lmpt
2L	10082295	2L_10082295_SNP [dm3] 2L_10082295_SNP [dm6]	C	T	4.867e^-4	0.74	INTRON CG44153	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10082350	2L_10082350_SNP [dm3] 2L_10082350_SNP [dm6]	G	T	4.867e^-4	0.74	INTRON CG44153	TF binding site mE1_TFBS_HSA
2L	10082358	2L_10082358_SNP [dm3] 2L_10082358_SNP [dm6]	G	A	4.867e^-4	0.74	INTRON CG44153	TF binding site mE1_TFBS_HSA
2L	10082495	2L_10082495_SNP [dm3] 2L_10082495_SNP [dm6]	G	A	4.867e^-4	0.74	INTRON CG44153
3L	1913278	3L_1913278_SNP [dm3] 3L_1913278_SNP [dm6]	T	C	4.872e^-4	0.74	INTERGENIC
3L	10895775	3L_10895775_SNP [dm3] 3L_10902675_SNP [dm6]	T	C	4.875e^-4	0.74	INTERGENIC
3R	10431493	3R_10431493_SNP [dm3] 3R_14605771_SNP [dm6]	C	T	4.875e^-4	0.74	SYNONYMOUS_CODING stumps	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	12510984	X_12510984_SNP [dm3] X_12616951_SNP [dm6]	G	T	4.875e^-4	0.74	INTRON CG11085	TF binding site BDTNP1_TFBS_dl
X	12511001	X_12511001_SNP [dm3] X_12616968_SNP [dm6]	G	T	4.875e^-4	0.74	INTRON CG11085	TF binding site BDTNP1_TFBS_dl
X	12511043	X_12511043_SNP [dm3] X_12617010_SNP [dm6]	T	C	4.875e^-4	0.74	INTRON CG11085	TF binding site BDTNP1_TFBS_dl
2L	4211001	2L_4211001_INS [dm3] 2L_4211001_INS [dm6]	T	TCTA	4.878e^-4	0.74	INTRON ft
X	4966354	X_4966354_SNP [dm3] X_5072321_SNP [dm6]	G	A	4.882e^-4	0.74	UTR_3_PRIME CG32767
3L	5615665	3L_5615665_SNP [dm3] 3L_5622565_SNP [dm6]	T	C	4.887e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3R	11127964	3R_11127964_SNP [dm3] 3R_15302242_SNP [dm6]	G	T	4.888e^-4	0.74	INTRON Tm1	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	10297506	3R_10297506_SNP [dm3] 3R_14471784_SNP [dm6]	T	A	4.888e^-4	0.74	INTRON cv-c
2R	8777614	2R_8777614_SNP [dm3] 2R_12890109_SNP [dm6]	A	G	4.891e^-4	0.74	INTRON vg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	22396016	X_22396016_INS [dm3] X_22994180_INS [dm6]	T	TAAT	4.896e^-4	0.74	INTRON stnA & 1 other	transposable element FlyBase
2L	5412308	2L_5412308_SNP [dm3] 2L_5412308_SNP [dm6]	C	T	4.906e^-4	0.74	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3766420	3R_3766420_SNP [dm3] 3R_7940698_SNP [dm6]	A	T	4.918e^-4	0.74	INTRON dsx	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17676018	2R_17676018_SNP [dm3] 2R_21788513_SNP [dm6]	C	T	4.934e^-4	0.74	INTERGENIC
3L	536533	3L_536533_SNP [dm3] 3L_536533_SNP [dm6]	A	G	4.935e^-4	0.74	INTRON klar
2R	12117877	2R_12117877_SNP [dm3] 2R_16230372_SNP [dm6]	A	G	4.939e^-4	0.74	UTR_5_PRIME CG15706 DOWNSTREAM Tsf3 INTRON CG15701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	11320940	X_11320940_SNP [dm3] X_11426907_SNP [dm6]	C	A	4.961e^-4	0.74	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7393367	2L_7393367_SNP [dm3] 2L_7393367_SNP [dm6]	G	C	4.970e^-4	0.74	INTRON CG5160
3L	4405562	3L_4405562_SNP [dm3] 3L_4405562_SNP [dm6]	C	T	4.972e^-4	0.74	SYNONYMOUS_CODING CG15019 DOWNSTREAM Syx17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3388307	2L_3388307_SNP [dm3] 2L_3388307_SNP [dm6]	C	A	4.979e^-4	0.74	UPSTREAM Sfp23F INTRON CG42460
2L	4269195	2L_4269195_SNP [dm3] 2L_4269195_SNP [dm6]	T	C	4.984e^-4	0.74	INTERGENIC
3L	13594123	3L_13594123_SNP [dm3] 3L_13601023_SNP [dm6]	G	A	4.990e^-4	0.74	INTRON bru-3
3R	4308334	3R_4308334_SNP [dm3] 3R_8482612_SNP [dm6]	A	G	5.004e^-4	0.74	INTERGENIC
3R	4308335	3R_4308335_SNP [dm3] 3R_8482613_SNP [dm6]	G	A	5.004e^-4	0.74	INTERGENIC
2R	17987919	2R_17987919_SNP [dm3] 2R_22100414_SNP [dm6]	C	T	5.004e^-4	0.74	UPSTREAM CG11073 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12296661	2R_12296661_SNP [dm3] 2R_16409156_SNP [dm6]	A	G	5.012e^-4	0.74	INTRON Sema-2b
2R	16400527	2R_16400527_SNP [dm3] 2R_20513022_SNP [dm6]	G	A	5.016e^-4	0.74	DOWNSTREAM CR44649 INTRON CG13426
3L	10729840	3L_10729840_SNP [dm3] 3L_10736740_SNP [dm6]	A	T	5.018e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10732798	3L_10732798_SNP [dm3] 3L_10739698_SNP [dm6]	A	T	5.018e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10732921	3L_10732921_SNP [dm3] 3L_10739821_SNP [dm6]	C	A	5.018e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10732923	3L_10732923_SNP [dm3] 3L_10739823_SNP [dm6]	G	T	5.018e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10732925	3L_10732925_SNP [dm3] 3L_10739825_SNP [dm6]	T	A	5.018e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10732926	3L_10732926_SNP [dm3] 3L_10739826_SNP [dm6]	T	C	5.018e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10732927	3L_10732927_INS [dm3] 3L_10739827_INS [dm6]	A	AAACATAAGT	5.018e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10732969	3L_10732969_SNP [dm3] 3L_10739869_SNP [dm6]	T	A	5.018e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10732992	3L_10732992_SNP [dm3] 3L_10739892_SNP [dm6]	A	T	5.018e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10732997	3L_10732997_SNP [dm3] 3L_10739897_SNP [dm6]	G	A	5.018e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10733004	3L_10733004_SNP [dm3] 3L_10739904_SNP [dm6]	G	C	5.018e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	15915751	2L_15915751_SNP [dm3] 2L_15915751_SNP [dm6]	T	A	5.026e^-4	0.74	INTRON beat-Ib
3L	11621763	3L_11621763_SNP [dm3] 3L_11628663_SNP [dm6]	G	A	5.033e^-4	0.74	UPSTREAM mir-3642 DOWNSTREAM PCID2 INTRON CG18815	TF binding site mE1_TFBS_HSA
3L	11621847	3L_11621847_SNP [dm3] 3L_11628747_SNP [dm6]	T	G	5.033e^-4	0.74	UPSTREAM mir-3642 INTRON CG18815	TF binding site mE1_TFBS_HSA
3L	11621876	3L_11621876_SNP [dm3] 3L_11628776_SNP [dm6]	A	G	5.033e^-4	0.74	UPSTREAM mir-3642 INTRON CG18815	TF binding site mE1_TFBS_HSA
3L	11621943	3L_11621943_SNP [dm3] 3L_11628843_SNP [dm6]	T	C	5.033e^-4	0.74	UPSTREAM mir-3642 INTRON CG18815	TF binding site mE1_TFBS_HSA
3L	11250976	3L_11250976_SNP [dm3] 3L_11257876_SNP [dm6]	G	A	5.037e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6701526	2L_6701526_SNP [dm3] 2L_6701526_SNP [dm6]	A	T	5.043e^-4	0.74	INTRON Tsp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7337487	3L_7337487_SNP [dm3] 3L_7344387_SNP [dm6]	A	G	5.071e^-4	0.74	UPSTREAM CG8596 INTRON CG8596	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	11630240	2L_11630240_SNP [dm3] 2L_11630240_SNP [dm6]	A	T	5.072e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11683256	2R_11683256_SNP [dm3] 2R_15795751_SNP [dm6]	C	T	5.077e^-4	0.74	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	12527344	2L_12527344_SNP [dm3] 2L_12527344_SNP [dm6]	C	A	5.079e^-4	0.74	INTRON bun	TF binding site BDTNP1_TFBS_dl
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	5.086e^-4	0.74	INTRON RhoGEF64C
2L	4589932	2L_4589932_SNP [dm3] 2L_4589932_SNP [dm6]	A	T	5.113e^-4	0.74	INTRON dp
3L	15213564	3L_15213564_SNP [dm3] 3L_15220464_SNP [dm6]	T	G	5.117e^-4	0.74	INTERGENIC
3R	23119776	3R_23119776_SNP [dm3] 3R_27294054_SNP [dm6]	C	T	5.118e^-4	0.74	DOWNSTREAM CG3339 INTERGENIC
2R	12476436	2R_12476436_SNP [dm3] 2R_16588931_SNP [dm6]	T	A	5.134e^-4	0.74	NON_SYNONYMOUS_CODING CG8311 DOWNSTREAM CG8306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8322133	3L_8322133_SNP [dm3] 3L_8329033_SNP [dm6]	A	C	5.137e^-4	0.74	DOWNSTREAM CG34461 INTRON CG34462	TF binding site mE1_TFBS_ttk
2R	19141214	2R_19141214_SNP [dm3] 2R_23253691_SNP [dm6]	T	C	5.140e^-4	0.74	INTERGENIC
3L	16320927	3L_16320927_SNP [dm3] 3L_16327827_SNP [dm6]	G	A	5.143e^-4	0.74	UTR_5_PRIME CG13038
X	18694318	X_18694318_SNP [dm3] X_18800285_SNP [dm6]	A	T	5.145e^-4	0.74	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11629082	3L_11629082_INS [dm3] 3L_11635982_INS [dm6]	A	AA	5.161e^-4	0.74	INTRON CG32091
X	6875964	X_6875964_DEL [dm3] X_6981931_DEL [dm6]	CGCTCTC	C	5.162e^-4	0.74	UPSTREAM ogre INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	11858758	2L_11858758_SNP [dm3] 2L_11858758_SNP [dm6]	T	A	5.163e^-4	0.74	INTRON Pde1c
2L	8338676	2L_8338676_SNP [dm3] 2L_8338676_SNP [dm6]	A	G	5.179e^-4	0.74	INTRON CG14274
3L	2869110	3L_2869110_SNP [dm3] 3L_2869110_SNP [dm6]	G	A	5.187e^-4	0.74	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12426740	2L_12426740_SNP [dm3] 2L_12426740_SNP [dm6]	T	G	5.208e^-4	0.74	UTR_3_PRIME CG5446 DOWNSTREAM CG5446 & 1 other
3L	8322134	3L_8322134_DEL [dm3] 3L_8329034_DEL [dm6]	TG	T	5.213e^-4	0.74	DOWNSTREAM CG34461 INTRON CG34462	TF binding site mE1_TFBS_ttk
3R	10851936	3R_10851936_SNP [dm3] 3R_15026214_SNP [dm6]	C	A	5.224e^-4	0.74	INTERGENIC
3L	823602	3L_823602_SNP [dm3] 3L_823602_SNP [dm6]	G	T	5.234e^-4	0.74	INTERGENIC
3L	11373916	3L_11373916_SNP [dm3] 3L_11380816_SNP [dm6]	A	T	5.237e^-4	0.74	INTERGENIC
2L	8766282	2L_8766282_SNP [dm3] 2L_8766282_SNP [dm6]	G	A	5.245e^-4	0.74	SYNONYMOUS_CODING CG9463
3R	25114806	3R_25114806_SNP [dm3] 3R_29289084_SNP [dm6]	T	C	5.254e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13430110	3L_13430110_SNP [dm3] 3L_13437010_SNP [dm6]	A	G	5.265e^-4	0.74	NON_SYNONYMOUS_CODING CG10154 UPSTREAM CG10725
2R	7111630	2R_7111630_SNP [dm3] 2R_11224125_SNP [dm6]	C	T	5.273e^-4	0.74	INTRON CG7737	TF binding site BDTNP1_TFBS_twi
X	2860553	X_2860553_SNP [dm3] X_2966520_SNP [dm6]	A	G	5.274e^-4	0.74	INTRON kirre & 1 other
3R	2135350	3R_2135350_SNP [dm3] 3R_6309628_SNP [dm6]	A	G	5.282e^-4	0.74	UPSTREAM CG31560 & 1 other INTERGENIC
3L	10607856	3L_10607856_SNP [dm3] 3L_10614756_SNP [dm6]	T	A	5.282e^-4	0.74	INTERGENIC
3L	10607874	3L_10607874_SNP [dm3] 3L_10614774_SNP [dm6]	C	A	5.282e^-4	0.74	INTERGENIC
3R	13473998	3R_13473998_SNP [dm3] 3R_17648276_SNP [dm6]	C	A	5.283e^-4	0.74	INTRON CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	15384751	2R_15384751_SNP [dm3] 2R_19497246_SNP [dm6]	G	A	5.298e^-4	0.74	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11341756	3L_11341756_SNP [dm3] 3L_11348656_SNP [dm6]	G	T	5.306e^-4	0.74	DOWNSTREAM CR45251 INTERGENIC
3L	9516763	3L_9516763_SNP [dm3] 3L_9523663_SNP [dm6]	G	C	5.308e^-4	0.74	INTRON CG33700
3L	3154896	3L_3154896_SNP [dm3] 3L_3154896_SNP [dm6]	C	T	5.309e^-4	0.74	UTR_3_PRIME BtbVII DOWNSTREAM BtbVII INTRON BtbVII
2L	3679854	2L_3679854_SNP [dm3] 2L_3679854_SNP [dm6]	T	C	5.316e^-4	0.74	INTRON CG34340
3R	19008361	3R_19008361_SNP [dm3] 3R_23182639_SNP [dm6]	A	G	5.320e^-4	0.74	UPSTREAM Irk1 INTRON Irk1
3R	25391010	3R_25391010_SNP [dm3] 3R_29565288_SNP [dm6]	A	T	5.327e^-4	0.74	DOWNSTREAM Dr INTERGENIC
3L	8487400	3L_8487400_SNP [dm3] 3L_8494300_SNP [dm6]	A	G	5.337e^-4	0.74	UTR_5_PRIME CG43163
2L	13688107	2L_13688107_SNP [dm3] 2L_13688107_SNP [dm6]	C	T	5.342e^-4	0.74	INTRON CG31814
3R	20620650	3R_20620650_SNP [dm3] 3R_24794928_SNP [dm6]	C	T	5.352e^-4	0.74	INTRON Ets96B
2R	2717863	2R_2717863_SNP [dm3] 2R_6830358_SNP [dm6]	G	T	5.379e^-4	0.74	DOWNSTREAM CG34215 INTRON CG15236
3L	11406017	3L_11406017_SNP [dm3] 3L_11412917_SNP [dm6]	C	T	5.389e^-4	0.74	INTERGENIC
2R	15592020	2R_15592020_SNP [dm3] 2R_19704515_SNP [dm6]	C	T	5.394e^-4	0.74	UPSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
2R	11923676	2R_11923676_SNP [dm3] 2R_16036171_SNP [dm6]	A	G	5.402e^-4	0.74	INTRON SP2353
X	9957403	X_9957403_SNP [dm3] X_10063370_SNP [dm6]	G	A	5.405e^-4	0.74	DOWNSTREAM Gr9a INTRON CG15312
3L	2673401	3L_2673401_SNP [dm3] 3L_2673401_SNP [dm6]	A	T	5.405e^-4	0.74	INTRON Fife
3L	1329562	3L_1329562_SNP [dm3] 3L_1329562_SNP [dm6]	C	T	5.406e^-4	0.74	UTR_3_PRIME Myo61F UPSTREAM mtacp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11629070	3L_11629070_DEL [dm3] 3L_11635970_DEL [dm6]	TT	T	5.411e^-4	0.74	INTRON CG32091
2L	10703978	2L_10703978_SNP [dm3] 2L_10703978_SNP [dm6]	G	A	5.417e^-4	0.74	SYNONYMOUS_CODING CG6415 INTRON Lip2
2L	881608	2L_881608_SNP [dm3] 2L_881608_SNP [dm6]	A	T	5.426e^-4	0.74	INTRON CG15824	TF binding site mE1_TFBS_cad
3L	14188835	3L_14188835_SNP [dm3] 3L_14195735_SNP [dm6]	T	A	5.430e^-4	0.74	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5662778	2L_5662778_SNP [dm3] 2L_5662778_SNP [dm6]	G	C	5.434e^-4	0.74	UPSTREAM Hsp60C & 1 other INTERGENIC
3L	8728573	3L_8728573_SNP [dm3] 3L_8735473_SNP [dm6]	C	T	5.440e^-4	0.74	INTRON Prm
3L	8728575	3L_8728575_SNP [dm3] 3L_8735475_SNP [dm6]	A	T	5.440e^-4	0.74	INTRON Prm
3L	8728599	3L_8728599_SNP [dm3] 3L_8735499_SNP [dm6]	C	A	5.440e^-4	0.74	INTRON Prm
3L	8728600	3L_8728600_SNP [dm3] 3L_8735500_SNP [dm6]	C	A	5.440e^-4	0.74	INTRON Prm
2L	7374398	2L_7374398_SNP [dm3] 2L_7374398_SNP [dm6]	T	C	5.443e^-4	0.74	INTRON Wnt10	TF binding site mE1_TFBS_cad
2L	13981351	2L_13981351_SNP [dm3] 2L_13981351_SNP [dm6]	A	G	5.458e^-4	0.74	SYNONYMOUS_CODING NimC2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2789571	2R_2789571_SNP [dm3] 2R_6902066_SNP [dm6]	G	C	5.479e^-4	0.74	INTRON CG30158
3R	25603205	3R_25603205_SNP [dm3] 3R_29777483_SNP [dm6]	A	G	5.482e^-4	0.74	INTRON kay	TF binding site BDTNP1_TFBS_z
2L	16952909	2L_16952909_SNP [dm3] 2L_16952909_SNP [dm6]	C	A	5.485e^-4	0.74	INTERGENIC
2L	10045640	2L_10045640_SNP [dm3] 2L_10045640_SNP [dm6]	C	T	5.490e^-4	0.74	INTERGENIC
2L	11310221	2L_11310221_SNP [dm3] 2L_11310221_SNP [dm6]	A	T	5.492e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9338369	2L_9338369_SNP [dm3] 2L_9338369_SNP [dm6]	C	T	5.497e^-4	0.74	INTRON Eaat1
2L	9338417	2L_9338417_SNP [dm3] 2L_9338417_SNP [dm6]	T	C	5.497e^-4	0.74	INTRON Eaat1
2R	8777151	2R_8777151_SNP [dm3] 2R_12889646_SNP [dm6]	T	A	5.516e^-4	0.74	INTRON vg	TF binding site BDTNP1_TFBS_da
2L	3797305	2L_3797305_SNP [dm3] 2L_3797305_SNP [dm6]	G	A	5.518e^-4	0.74	SYNONYMOUS_CODING CG3921
2L	13696735	2L_13696735_SNP [dm3] 2L_13696735_SNP [dm6]	A	T	5.519e^-4	0.74	INTRON CG31814
X	15164613	X_15164613_SNP [dm3] X_15270580_SNP [dm6]	T	G	5.531e^-4	0.74	DOWNSTREAM CG9106 INTERGENIC
2L	4217382	2L_4217382_SNP [dm3] 2L_4217382_SNP [dm6]	C	T	5.532e^-4	0.74	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	4966397	X_4966397_SNP [dm3] X_5072364_SNP [dm6]	A	T	5.532e^-4	0.74	UTR_3_PRIME CG32767
2L	4930548	2L_4930548_SNP [dm3] 2L_4930548_SNP [dm6]	A	G	5.536e^-4	0.74	INTRON hoe1
2L	16753823	2L_16753823_SNP [dm3] 2L_16753823_SNP [dm6]	C	G	5.538e^-4	0.74	UPSTREAM yellow-b DOWNSTREAM CG17912 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	16235163	3L_16235163_SNP [dm3] 3L_16242063_SNP [dm6]	A	C	5.539e^-4	0.74	INTERGENIC
3L	1307800	3L_1307800_SNP [dm3] 3L_1307800_SNP [dm6]	T	A	5.541e^-4	0.74	SPLICE_SITE_REGION CG2469 UPSTREAM CG2277 INTRON CG2469	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10180593	3R_10180593_SNP [dm3] 3R_14354871_SNP [dm6]	C	T	5.547e^-4	0.74	INTRON NK7.1
2L	490987	2L_490987_SNP [dm3] 2L_490987_SNP [dm6]	G	T	5.558e^-4	0.74	UTR_5_PRIME ush INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	490995	2L_490995_SNP [dm3] 2L_490995_SNP [dm6]	A	T	5.558e^-4	0.74	START_GAINED ush UTR_5_PRIME ush INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	15282034	3R_15282034_SNP [dm3] 3R_19456312_SNP [dm6]	A	G	5.564e^-4	0.74	INTRON CG31221
3L	9842668	3L_9842668_SNP [dm3] 3L_9849568_SNP [dm6]	C	T	5.572e^-4	0.74	INTRON RasGAP1
3L	12830968	3L_12830968_SNP [dm3] 3L_12837868_SNP [dm6]	T	C	5.580e^-4	0.74	INTRON CG10960
3L	12831039	3L_12831039_SNP [dm3] 3L_12837939_SNP [dm6]	T	A	5.580e^-4	0.74	INTRON CG10960
2L	9165122	2L_9165122_SNP [dm3] 2L_9165122_SNP [dm6]	A	G	5.583e^-4	0.74	NON_SYNONYMOUS_CODING CG13108 DOWNSTREAM CG9586
3L	5615621	3L_5615621_SNP [dm3] 3L_5622521_SNP [dm6]	T	G	5.595e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	13983298	2L_13983298_SNP [dm3] 2L_13983298_SNP [dm6]	A	C	5.600e^-4	0.74	UTR_3_PRIME rk DOWNSTREAM NimC2
3R	2133199	3R_2133199_SNP [dm3] 3R_6307477_SNP [dm6]	A	T	5.613e^-4	0.74	NON_SYNONYMOUS_CODING CG31556
2L	4780033	2L_4780033_SNP [dm3] 2L_4780033_SNP [dm6]	G	C	5.616e^-4	0.74	INTRON CG15630
2L	5328244	2L_5328244_SNP [dm3] 2L_5328244_SNP [dm6]	T	A	5.621e^-4	0.74	DOWNSTREAM cype INTRON CG14022
3L	1569951	3L_1569951_SNP [dm3] 3L_1569951_SNP [dm6]	T	A	5.622e^-4	0.74	INTRON CG12004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	16292312	2R_16292312_SNP [dm3] 2R_20404807_SNP [dm6]	A	T	5.629e^-4	0.74	INTERGENIC
2L	12426809	2L_12426809_SNP [dm3] 2L_12426809_SNP [dm6]	A	C	5.640e^-4	0.74	UTR_3_PRIME CG5446 DOWNSTREAM CG5446 & 1 other
2R	5058532	2R_5058532_SNP [dm3] 2R_9171027_SNP [dm6]	C	T	5.641e^-4	0.74	SYNONYMOUS_CODING Rme-8	TF binding site mE1_TFBS_cad
3L	15746062	3L_15746062_SNP [dm3] 3L_15752962_SNP [dm6]	A	C	5.643e^-4	0.74	INTERGENIC
2R	13739315	2R_13739315_SNP [dm3] 2R_17851810_SNP [dm6]	T	A	5.666e^-4	0.74	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
3R	7984044	3R_7984044_SNP [dm3] 3R_12158322_SNP [dm6]	A	G	5.666e^-4	0.74	INTRON dpr15
3R	13467354	3R_13467354_SNP [dm3] 3R_17641632_SNP [dm6]	C	A	5.670e^-4	0.74	INTRON CG43175
X	10499288	X_10499288_SNP [dm3] X_10605255_SNP [dm6]	G	A	5.680e^-4	0.74	INTRON CG43347	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22329142	X_22329142_SNP [dm3] X_22927306_SNP [dm6]	A	C	5.681e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9930183	2R_9930183_SNP [dm3] 2R_14042678_SNP [dm6]	A	T	5.687e^-4	0.74	INTRON mam	TF binding site BDTNP1_TFBS_dl
2L	3522975	2L_3522975_SNP [dm3] 2L_3522975_SNP [dm6]	G	A	5.692e^-4	0.74	SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
2L	3523051	2L_3523051_SNP [dm3] 2L_3523051_SNP [dm6]	A	T	5.692e^-4	0.74	NON_SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
3R	4378193	3R_4378193_SNP [dm3] 3R_8552471_SNP [dm6]	C	A	5.700e^-4	0.74	UPSTREAM Or85d INTERGENIC
3L	12548154	3L_12548154_SNP [dm3] 3L_12555054_SNP [dm6]	G	T	5.708e^-4	0.74	INTRON sowah
3L	12548217	3L_12548217_SNP [dm3] 3L_12555117_SNP [dm6]	T	C	5.708e^-4	0.74	INTRON sowah
2R	16297697	2R_16297697_SNP [dm3] 2R_20410192_SNP [dm6]	T	G	5.712e^-4	0.74	INTERGENIC
2R	13803096	2R_13803096_SNP [dm3] 2R_17915591_SNP [dm6]	T	G	5.714e^-4	0.74	INTRON Elk
3R	12970762	3R_12970762_SNP [dm3] 3R_17145040_SNP [dm6]	A	T	5.723e^-4	0.74	UTR_3_PRIME m-cup DOWNSTREAM m-cup
2R	3056357	2R_3056357_SNP [dm3] 2R_7168852_SNP [dm6]	C	G	5.733e^-4	0.74	INTRON pk
2L	22254890	2L_22254890_SNP [dm3] 2L_22254890_SNP [dm6]	G	T	5.767e^-4	0.74	INTRON Tif-IA
3L	11617938	3L_11617938_SNP [dm3] 3L_11624838_SNP [dm6]	G	A	5.768e^-4	0.74	UPSTREAM CG6084 INTRON CG6083
3L	8818457	3L_8818457_DEL [dm3] 3L_8825357_DEL [dm6]	ATA	A	5.769e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	11631056	3L_11631056_SNP [dm3] 3L_11637956_SNP [dm6]	C	T	5.770e^-4	0.74	INTRON CG32091
X	14182936	X_14182936_SNP [dm3] X_14288903_SNP [dm6]	T	C	5.772e^-4	0.74	SYNONYMOUS_CODING CG9400 DOWNSTREAM Muc12Ea	TF binding site mE1_TFBS_HSA
2L	13744805	2L_13744805_SNP [dm3] 2L_13744805_SNP [dm6]	C	A	5.784e^-4	0.74	INTERGENIC
2L	1677571	2L_1677571_SNP [dm3] 2L_1677571_SNP [dm6]	C	G	5.788e^-4	0.74	INTRON chinmo
X	5968822	X_5968822_SNP [dm3] X_6074789_SNP [dm6]	G	C	5.788e^-4	0.74	UTR_5_PRIME Tsp5D
X	18700583	X_18700583_SNP [dm3] X_18806550_SNP [dm6]	A	G	5.792e^-4	0.74	UPSTREAM CG7058 & 1 other DOWNSTREAM Pk17E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15069836	3R_15069836_SNP [dm3] 3R_19244114_SNP [dm6]	T	C	5.804e^-4	0.74	SYNONYMOUS_CODING unc79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3813272	3R_3813272_SNP [dm3] 3R_7987550_SNP [dm6]	G	T	5.808e^-4	0.74	INTRON CG2781
3R	3813287	3R_3813287_SNP [dm3] 3R_7987565_SNP [dm6]	A	G	5.808e^-4	0.74	INTRON CG2781
X	8815616	X_8815616_SNP [dm3] X_8921583_SNP [dm6]	A	G	5.809e^-4	0.74	INTRON rdgA
X	21081440	X_21081440_SNP [dm3] X_21210413_SNP [dm6]	A	G	5.812e^-4	0.74	INTRON CG32521
X	11900139	X_11900139_SNP [dm3] X_12006106_SNP [dm6]	A	G	5.819e^-4	0.74	INTERGENIC
3R	16774007	3R_16774007_SNP [dm3] 3R_20948285_SNP [dm6]	T	C	5.822e^-4	0.74	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	16774047	3R_16774047_SNP [dm3] 3R_20948325_SNP [dm6]	T	G	5.822e^-4	0.74	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	21441224	3R_21441224_DEL [dm3] 3R_25615502_DEL [dm6]	ACCTCCTCCAT...	A	5.823e^-4	0.74	INTRON Npl4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16734398	3L_16734398_SNP [dm3] 3L_16741298_SNP [dm6]	T	A	5.823e^-4	0.74	INTERGENIC
2R	19728235	2R_19728235_SNP [dm3] 2R_23840712_SNP [dm6]	G	A	5.829e^-4	0.74	UPSTREAM snoRNA:Psi18S-176 DOWNSTREAM CG5549 & 1 other EXON CR44805	TF binding site mE1_TFBS_HSA
2R	19730181	2R_19730181_SNP [dm3] 2R_23842658_SNP [dm6]	T	A	5.829e^-4	0.74	SYNONYMOUS_CODING shu DOWNSTREAM Snap29	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10316446	3R_10316446_SNP [dm3] 3R_14490724_SNP [dm6]	A	T	5.832e^-4	0.74	INTERGENIC
2R	17760863	2R_17760863_SNP [dm3] 2R_21873358_SNP [dm6]	T	C	5.841e^-4	0.74	INTRON Fili
2R	19508413	2R_19508413_SNP [dm3] 2R_23620890_SNP [dm6]	A	G	5.844e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12527355	2L_12527355_SNP [dm3] 2L_12527355_SNP [dm6]	A	G	5.849e^-4	0.74	INTRON bun	TF binding site BDTNP1_TFBS_dl
2L	5792276	2L_5792276_SNP [dm3] 2L_5792276_SNP [dm6]	G	A	5.853e^-4	0.74	INTRON CG9171
2L	10218519	2L_10218519_SNP [dm3] 2L_10218519_SNP [dm6]	C	G	5.857e^-4	0.74	INTRON Npc1a	TF binding site mE1_TFBS_HSA
X	18694309	X_18694309_DEL [dm3] X_18800276_DEL [dm6]	AA	A	5.864e^-4	0.74	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3301609	X_3301609_SNP [dm3] X_3407576_SNP [dm6]	C	T	5.870e^-4	0.74	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12294766	2L_12294766_SNP [dm3] 2L_12294766_SNP [dm6]	C	T	5.878e^-4	0.74	INTRON aret
2R	13739276	2R_13739276_SNP [dm3] 2R_17851771_SNP [dm6]	G	A	5.885e^-4	0.74	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
2L	4029264	2L_4029264_SNP [dm3] 2L_4029264_SNP [dm6]	C	A	5.886e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	18734388	3L_18734388_SNP [dm3] 3L_18741288_SNP [dm6]	C	T	5.891e^-4	0.74	INTERGENIC
2R	16302031	2R_16302031_SNP [dm3] 2R_20414526_SNP [dm6]	A	C	5.895e^-4	0.74	INTERGENIC
2R	17105397	2R_17105397_SNP [dm3] 2R_21217892_SNP [dm6]	G	A	5.908e^-4	0.74	UTR_3_PRIME ASPP UPSTREAM CG15661
3R	10260810	3R_10260810_SNP [dm3] 3R_14435088_SNP [dm6]	C	G	5.937e^-4	0.74	INTRON cv-c
3L	14100465	3L_14100465_SNP [dm3] 3L_14107365_SNP [dm6]	T	C	5.938e^-4	0.74	INTRON Sox21a	TF binding site mE1_TFBS_cad
2R	17537213	2R_17537213_SNP [dm3] 2R_21649708_SNP [dm6]	A	G	5.940e^-4	0.74	INTRON CG10082	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	6002427	2R_6002427_SNP [dm3] 2R_10114922_SNP [dm6]	A	G	5.941e^-4	0.74	SYNONYMOUS_CODING Pfk
X	18461428	X_18461428_SNP [dm3] X_18567395_SNP [dm6]	T	C	5.944e^-4	0.74	INTRON Bx
X	9732546	X_9732546_SNP [dm3] X_9838513_SNP [dm6]	T	G	5.945e^-4	0.74	INTRON CG32698
X	9732579	X_9732579_SNP [dm3] X_9838546_SNP [dm6]	C	T	5.945e^-4	0.74	INTRON CG32698
X	9733473	X_9733473_SNP [dm3] X_9839440_SNP [dm6]	T	G	5.945e^-4	0.74	INTRON CG32698
3R	11982358	3R_11982358_SNP [dm3] 3R_16156636_SNP [dm6]	A	G	5.945e^-4	0.74	INTRON CG6006
2R	13745318	2R_13745318_INS [dm3] 2R_17857813_INS [dm6]	T	TTGATCATATCTCCT...	5.962e^-4	0.74	INTRON olf186-F
3L	11617856	3L_11617856_SNP [dm3] 3L_11624756_SNP [dm6]	T	G	5.971e^-4	0.74	SYNONYMOUS_CODING CG6083 UPSTREAM CG6084
X	20558843	X_20558843_SNP [dm3] X_20687816_SNP [dm6]	C	A	5.974e^-4	0.74	DOWNSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	4695761	3L_4695761_SNP [dm3] 3L_4695761_SNP [dm6]	A	G	5.996e^-4	0.74	UPSTREAM CG15876 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12963589	3R_12963589_SNP [dm3] 3R_17137867_SNP [dm6]	A	C	6.000e^-4	0.74	UPSTREAM CG5255 DOWNSTREAM CG5246 INTERGENIC
2L	8766635	2L_8766635_SNP [dm3] 2L_8766635_SNP [dm6]	T	A	6.020e^-4	0.74	INTRON CG9463
3L	9737460	3L_9737460_SNP [dm3] 3L_9744360_SNP [dm6]	G	T	6.023e^-4	0.74	UPSTREAM CG42268 INTRON CG42268 EXON CR44348	TF binding site BDTNP1_TFBS_dl
3L	9737481	3L_9737481_SNP [dm3] 3L_9744381_SNP [dm6]	T	A	6.023e^-4	0.74	UPSTREAM CG42268 INTRON CG42268 EXON CR44348	TF binding site BDTNP1_TFBS_dl
X	7083382	X_7083382_SNP [dm3] X_7189349_SNP [dm6]	A	G	6.028e^-4	0.74	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	10372357	2R_10372357_SNP [dm3] 2R_14484852_SNP [dm6]	G	C	6.038e^-4	0.74	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	13460811	3R_13460811_INS [dm3] 3R_17635089_INS [dm6]	A	ACTCGAA	6.041e^-4	0.74	INTRON CG43175
2R	13944740	2R_13944740_SNP [dm3] 2R_18057235_SNP [dm6]	T	G	6.048e^-4	0.74	UPSTREAM CG10912 DOWNSTREAM CR45314 INTERGENIC	TF binding site mE1_TFBS_cad
3R	21427360	3R_21427360_DEL [dm3] 3R_25601638_DEL [dm6]	AACTCACCA	A	6.049e^-4	0.74	UTR_3_PRIME msi DOWNSTREAM msi INTRON ymp
X	3968756	X_3968756_SNP [dm3] X_4074723_SNP [dm6]	C	T	6.051e^-4	0.74	INTERGENIC
2R	5980533	2R_5980533_DEL [dm3] 2R_10093028_DEL [dm6]	CACAAATTAATGGC...	C	6.054e^-4	0.74	INTRON CG2269
3L	3103668	3L_3103668_SNP [dm3] 3L_3103668_SNP [dm6]	C	G	6.071e^-4	0.74	INTRON Cht7
2R	20171835	2R_20171835_SNP [dm3] 2R_24284312_SNP [dm6]	G	T	6.074e^-4	0.74	UPSTREAM nvy INTRON nvy
2R	10085901	2R_10085901_SNP [dm3] 2R_14198396_SNP [dm6]	C	T	6.075e^-4	0.74	DOWNSTREAM VGAT & 1 other INTERGENIC
3L	6688068	3L_6688068_SNP [dm3] 3L_6694968_SNP [dm6]	A	T	6.083e^-4	0.74	INTRON SP1173
2L	2546180	2L_2546180_SNP [dm3] 2L_2546180_SNP [dm6]	T	A	6.092e^-4	0.74	INTERGENIC
2R	19960120	2R_19960120_SNP [dm3] 2R_24072597_SNP [dm6]	T	G	6.096e^-4	0.74	INTRON CG3209
2R	6014884	2R_6014884_SNP [dm3] 2R_10127379_SNP [dm6]	A	G	6.112e^-4	0.74	SYNONYMOUS_CODING gem
3L	11511027	3L_11511027_SNP [dm3] 3L_11517927_SNP [dm6]	G	T	6.118e^-4	0.74	NON_SYNONYMOUS_CODING CG7512 DOWNSTREAM Fuca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	15877268	2R_15877268_SNP [dm3] 2R_19989763_SNP [dm6]	G	A	6.131e^-4	0.74	INTERGENIC
2L	3965219	2L_3965219_SNP [dm3] 2L_3965219_SNP [dm6]	C	T	6.159e^-4	0.74	INTRON fred
3R	15214381	3R_15214381_SNP [dm3] 3R_19388659_SNP [dm6]	T	A	6.178e^-4	0.74	SYNONYMOUS_CODING CG3734 INTRON Ino80	TF binding site mE1_TFBS_sens
3L	11170913	3L_11170913_SNP [dm3] 3L_11177813_SNP [dm6]	G	A	6.195e^-4	0.74	UTR_3_PRIME GlcAT-P DOWNSTREAM CG14142
2L	8580229	2L_8580229_SNP [dm3] 2L_8580229_SNP [dm6]	A	C	6.195e^-4	0.74	INTRON Sema-1a
3R	26850594	3R_26850594_SNP [dm3] 3R_31024872_SNP [dm6]	A	C	6.197e^-4	0.74	INTERGENIC
3R	26850629	3R_26850629_SNP [dm3] 3R_31024907_SNP [dm6]	A	G	6.197e^-4	0.74	INTERGENIC
3L	10784751	3L_10784751_SNP [dm3] 3L_10791651_SNP [dm6]	C	T	6.200e^-4	0.74	INTERGENIC
2R	6016871	2R_6016871_SNP [dm3] 2R_10129366_SNP [dm6]	T	C	6.202e^-4	0.74	INTRON gem
3L	13018073	3L_13018073_SNP [dm3] 3L_13024973_SNP [dm6]	C	T	6.221e^-4	0.74	SYNONYMOUS_CODING Zmynd10 DOWNSTREAM snoRNA:Me28S-A774a & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	22639398	2L_22639398_SNP [dm3] 2L_22746666_SNP [dm6]	G	C	6.222e^-4	0.74	INTRON CG40006
3L	11568738	3L_11568738_DEL [dm3] 3L_11575638_DEL [dm6]	AA	A	6.230e^-4	0.74	UPSTREAM CG33490 INTRON CG33489
2L	3006663	2L_3006663_SNP [dm3] 2L_3006663_SNP [dm6]	T	A	6.230e^-4	0.74	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10028104	X_10028104_SNP [dm3] X_10134071_SNP [dm6]	G	A	6.247e^-4	0.74	NON_SYNONYMOUS_CODING RhoU INTRON CR44894
3L	9887889	3L_9887889_SNP [dm3] 3L_9894789_SNP [dm6]	A	G	6.261e^-4	0.74	UPSTREAM CG6709 & 1 other DOWNSTREAM CG6707 INTERGENIC
2R	5980488	2R_5980488_SNP [dm3] 2R_10092983_SNP [dm6]	C	T	6.263e^-4	0.74	INTRON CG2269
2L	4595476	2L_4595476_SNP [dm3] 2L_4595476_SNP [dm6]	T	A	6.264e^-4	0.74	UPSTREAM dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13739922	2R_13739922_SNP [dm3] 2R_17852417_SNP [dm6]	T	A	6.277e^-4	0.74	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3523474	2L_3523474_SNP [dm3] 2L_3523474_SNP [dm6]	C	T	6.295e^-4	0.74	NON_SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
3L	6688076	3L_6688076_SNP [dm3] 3L_6694976_SNP [dm6]	G	T	6.299e^-4	0.74	INTRON SP1173
3L	6688084	3L_6688084_INS [dm3] 3L_6694984_INS [dm6]	T	TA	6.299e^-4	0.74	INTRON SP1173
3L	6688089	3L_6688089_INS [dm3] 3L_6694989_INS [dm6]	A	AA	6.299e^-4	0.74	INTRON SP1173
3L	6688091	3L_6688091_SNP [dm3] 3L_6694991_SNP [dm6]	C	A	6.299e^-4	0.74	INTRON SP1173
2R	7281263	2R_7281263_SNP [dm3] 2R_11393758_SNP [dm6]	G	A	6.301e^-4	0.74	UPSTREAM tRNA:CR30257 INTRON sprt
3R	10172974	3R_10172974_INS [dm3] 3R_14347252_INS [dm6]	G	GAG	6.302e^-4	0.74	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13592797	3L_13592797_SNP [dm3] 3L_13599697_SNP [dm6]	T	C	6.306e^-4	0.74	INTRON bru-3 EXON CR45120
2R	20171133	2R_20171133_SNP [dm3] 2R_24283610_SNP [dm6]	C	A	6.313e^-4	0.74	INTRON nvy
2R	16188148	2R_16188148_SNP [dm3] 2R_20300643_SNP [dm6]	T	C	6.322e^-4	0.74	INTERGENIC
2L	3380673	2L_3380673_SNP [dm3] 2L_3380673_SNP [dm6]	T	A	6.324e^-4	0.74	INTERGENIC
2L	11858722	2L_11858722_SNP [dm3] 2L_11858722_SNP [dm6]	A	G	6.326e^-4	0.74	INTRON Pde1c
2L	10764772	2L_10764772_SNP [dm3] 2L_10764772_SNP [dm6]	G	A	6.328e^-4	0.74	SYNONYMOUS_CODING CG6495 DOWNSTREAM UbcD2	TF binding site mE1_TFBS_chinmo
2R	16998506	2R_16998506_SNP [dm3] 2R_21111001_SNP [dm6]	A	G	6.333e^-4	0.74	INTRON ktub
3L	16356855	3L_16356855_SNP [dm3] 3L_16363755_SNP [dm6]	A	G	6.335e^-4	0.74	DOWNSTREAM Cpr72Ea INTERGENIC
3L	16356892	3L_16356892_SNP [dm3] 3L_16363792_SNP [dm6]	A	T	6.335e^-4	0.74	DOWNSTREAM Cpr72Ea INTERGENIC
3L	16356915	3L_16356915_SNP [dm3] 3L_16363815_SNP [dm6]	T	C	6.335e^-4	0.74	DOWNSTREAM Cpr72Ea INTERGENIC
2R	17536676	2R_17536676_SNP [dm3] 2R_21649171_SNP [dm6]	T	A	6.360e^-4	0.74	INTRON CG10082	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16341636	X_16341636_DEL [dm3] X_16447603_DEL [dm6]	TGACAGCGCGCGAGTACAA...	T	6.364e^-4	0.74	UTR_3_PRIME CG34015 UPSTREAM eIF-2alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4874046	2L_4874046_SNP [dm3] 2L_4874046_SNP [dm6]	T	C	6.371e^-4	0.74	INTRON pog
2L	9463673	2L_9463673_SNP [dm3] 2L_9463673_SNP [dm6]	A	C	6.373e^-4	0.74	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn

By genomic position
Variant impact
Gene name

relativeCS phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results