DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.648e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.03182

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.1105	0.0777

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2008 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	22526049	3L_22526049_SNP [dm3] 3L_22532949_SNP [dm6]	T	G	1.537e^-7	0.288	INTERGENIC	transposable element FlyBase
3L	5473561	3L_5473561_INS [dm3] 3L_5480461_INS [dm6]	C	CCACTGAAAC	6.805e^-7	0.472		TF binding site mE1_TFBS_inv
3L	5473554	3L_5473554_SNP [dm3] 3L_5480454_SNP [dm6]	G	C	1.825e^-6	0.472	NON_SYNONYMOUS_CODING CG4835	TF binding site mE1_TFBS_inv
X	7063945	X_7063945_SNP [dm3] X_7169912_SNP [dm6]	T	G	1.870e^-6	0.472	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	7063624	X_7063624_SNP [dm3] X_7169591_SNP [dm6]	T	A	2.411e^-6	0.472	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12620070	3L_12620070_SNP [dm3] 3L_12626970_SNP [dm6]	A	C	2.464e^-6	0.472	UPSTREAM CR32111 INTERGENIC
X	17923283	X_17923283_SNP [dm3] X_18029250_SNP [dm6]	G	A	2.839e^-6	0.472	DOWNSTREAM CG6867 INTRON Sh
2L	17805383	2L_17805383_SNP [dm3] 2L_17805383_SNP [dm6]	A	T	2.959e^-6	0.472	INTRON CadN2
2L	13841632	2L_13841632_SNP [dm3] 2L_13841632_SNP [dm6]	A	G	3.299e^-6	0.472	UPSTREAM CG33307 INTRON CenG1A	TF binding site mE1_TFBS_bab1
X	7063744	X_7063744_SNP [dm3] X_7169711_SNP [dm6]	C	T	3.534e^-6	0.472	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	7063638	X_7063638_INS [dm3] X_7169605_INS [dm6]	A	AGAA	4.128e^-6	0.472	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7063830	X_7063830_SNP [dm3] X_7169797_SNP [dm6]	A	G	4.250e^-6	0.472	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	17805384	2L_17805384_SNP [dm3] 2L_17805384_SNP [dm6]	C	T	4.325e^-6	0.472	INTRON CadN2
2L	8392690	2L_8392690_SNP [dm3] 2L_8392690_SNP [dm6]	C	A	4.389e^-6	0.472	SYNONYMOUS_CODING Acp29AB UPSTREAM CG42820 DOWNSTREAM lectin-29Ca	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	7063709	X_7063709_SNP [dm3] X_7169676_SNP [dm6]	C	T	4.458e^-6	0.472	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	6323238	3L_6323238_SNP [dm3] 3L_6330138_SNP [dm6]	C	T	4.485e^-6	0.472	UTR_3_PRIME CG13300
3R	18305132	3R_18305132_SNP [dm3] 3R_22479410_SNP [dm6]	G	A	5.174e^-6	0.472	SYNONYMOUS_CODING Nrx-1
2L	3019466	2L_3019466_INS [dm3] 2L_3019466_INS [dm6]	T	TT	5.183e^-6	0.472	INTRON CG17264	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	21504876	3L_21504876_SNP [dm3] 3L_21511776_SNP [dm6]	T	C	5.467e^-6	0.472	SYNONYMOUS_CODING M6 UTR_3_PRIME M6 DOWNSTREAM SAK	TF binding site mE1_TFBS_sens
X	17923304	X_17923304_SNP [dm3] X_18029271_SNP [dm6]	C	T	5.712e^-6	0.472	INTRON Sh
X	17923280	X_17923280_SNP [dm3] X_18029247_SNP [dm6]	C	T	5.720e^-6	0.472	DOWNSTREAM CG6867 INTRON Sh
X	7063714	X_7063714_DEL [dm3] X_7169681_DEL [dm6]	TCACG	AT	5.932e^-6	0.472	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	18429006	2R_18429006_DEL [dm3] 2R_22541501_DEL [dm6]	TACGATTA	T	6.004e^-6	0.472	INTRON px
X	7063783	X_7063783_SNP [dm3] X_7169750_SNP [dm6]	A	G	6.035e^-6	0.472	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	9881373	2L_9881373_SNP [dm3] 2L_9881373_SNP [dm6]	T	G	7.188e^-6	0.52	INTRON nAChRalpha6
2L	9947225	2L_9947225_SNP [dm3] 2L_9947225_SNP [dm6]	A	T	7.205e^-6	0.52	INTRON CG5853
X	7062865	X_7062865_SNP [dm3] X_7168832_SNP [dm6]	T	C	9.394e^-6	0.611	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4663905	2R_4663905_SNP [dm3] 2R_8776400_SNP [dm6]	T	A	9.607e^-6	0.611	INTERGENIC
3L	21638606	3L_21638606_SNP [dm3] 3L_21645506_SNP [dm6]	G	A	9.778e^-6	0.611	UTR_5_PRIME CG43980	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	7063691	X_7063691_SNP [dm3] X_7169658_SNP [dm6]	G	T	1.039e^-5	0.611	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	8672749	3L_8672749_SNP [dm3] 3L_8679649_SNP [dm6]	G	A	1.048e^-5	0.611	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	21638594	3L_21638594_SNP [dm3] 3L_21645494_SNP [dm6]	G	C	1.070e^-5	0.611	UTR_5_PRIME CG43980	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	17805366	2L_17805366_SNP [dm3] 2L_17805366_SNP [dm6]	T	A	1.098e^-5	0.611	INTRON CadN2
3R	14346728	3R_14346728_SNP [dm3] 3R_18521006_SNP [dm6]	T	A	1.112e^-5	0.611	INTRON fru
3R	18745650	3R_18745650_SNP [dm3] 3R_22919928_SNP [dm6]	G	A	1.140e^-5	0.611	INTRON klg
2L	8392678	2L_8392678_SNP [dm3] 2L_8392678_SNP [dm6]	G	T	1.274e^-5	0.632	SYNONYMOUS_CODING Acp29AB UPSTREAM CG42820 DOWNSTREAM lectin-29Ca	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	18896509	3R_18896509_SNP [dm3] 3R_23070787_SNP [dm6]	T	C	1.304e^-5	0.632	UTR_3_PRIME CG13830
2L	3019863	2L_3019863_SNP [dm3] 2L_3019863_SNP [dm6]	A	G	1.325e^-5	0.632	NON_SYNONYMOUS_CODING CG17264	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17923222	X_17923222_SNP [dm3] X_18029189_SNP [dm6]	G	A	1.352e^-5	0.632	DOWNSTREAM CG6867 INTRON Sh
X	17923383	X_17923383_SNP [dm3] X_18029350_SNP [dm6]	T	C	1.357e^-5	0.632	INTRON Sh
2L	13862381	2L_13862381_SNP [dm3] 2L_13862381_SNP [dm6]	G	A	1.386e^-5	0.632	INTRON CenG1A	TF binding site BDTNP1_TFBS_da mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
X	17923299	X_17923299_SNP [dm3] X_18029266_SNP [dm6]	T	C	1.415e^-5	0.632	INTRON Sh
3L	22115469	3L_22115469_SNP [dm3] 3L_22122369_SNP [dm6]	G	A	1.541e^-5	0.648	UPSTREAM CR45235 DOWNSTREAM CR45236 INTERGENIC
2R	4007994	2R_4007994_SNP [dm3] 2R_8120489_SNP [dm6]	A	G	1.595e^-5	0.648	INTRON Asap
3L	22545797	3L_22545797_SNP [dm3] 3L_22552697_SNP [dm6]	C	T	1.625e^-5	0.648	DOWNSTREAM Trxr-2 INTERGENIC
X	7063424	X_7063424_SNP [dm3] X_7169391_SNP [dm6]	C	T	1.698e^-5	0.648	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22014609	3R_22014609_DEL [dm3] 3R_26188887_DEL [dm6]	GTG	G	1.702e^-5	0.648	UPSTREAM CG6073 DOWNSTREAM CG34130 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	18024993	2R_18024993_SNP [dm3] 2R_22137488_SNP [dm6]	C	T	1.765e^-5	0.648	UTR_5_PRIME a INTRON a	TF binding site mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3L	7927169	3L_7927169_SNP [dm3] 3L_7934069_SNP [dm6]	T	C	1.787e^-5	0.648	UTR_5_PRIME syd INTRON syd	TF binding site mE1_TFBS_cad
2L	661593	2L_661593_SNP [dm3] 2L_661593_SNP [dm6]	G	T	1.809e^-5	0.648	INTRON ds	TF binding site mE1_TFBS_HSA
2L	7386307	2L_7386307_SNP [dm3] 2L_7386307_SNP [dm6]	G	A	1.860e^-5	0.648	INTRON CG5149	TF binding site BDTNP1_TFBS_twi
X	17923339	X_17923339_SNP [dm3] X_18029306_SNP [dm6]	A	T	1.867e^-5	0.648	INTRON Sh
X	8786586	X_8786586_SNP [dm3] X_8892553_SNP [dm6]	G	A	1.913e^-5	0.648	UPSTREAM Moe INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	15228278	2L_15228278_SNP [dm3] 2L_15228278_SNP [dm6]	G	A	1.980e^-5	0.648	DOWNSTREAM ZnT35C INTERGENIC
3R	23141637	3R_23141637_SNP [dm3] 3R_27315915_SNP [dm6]	A	G	1.994e^-5	0.648	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	7063427	X_7063427_SNP [dm3] X_7169394_SNP [dm6]	A	G	2.071e^-5	0.648	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13432497	2L_13432497_SNP [dm3] 2L_13432497_SNP [dm6]	G	A	2.079e^-5	0.648	INTRON CG42784
2L	15243978	2L_15243978_SNP [dm3] 2L_15243978_SNP [dm6]	G	A	2.092e^-5	0.648	INTRON ZnT35C
2L	13862398	2L_13862398_SNP [dm3] 2L_13862398_SNP [dm6]	T	C	2.096e^-5	0.648	INTRON CenG1A	TF binding site BDTNP1_TFBS_da mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
3L	21836470	3L_21836470_SNP [dm3] 3L_21843370_SNP [dm6]	C	G	2.121e^-5	0.648	UPSTREAM CG14563 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	7062871	X_7062871_SNP [dm3] X_7168838_SNP [dm6]	T	C	2.123e^-5	0.648	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	661604	2L_661604_SNP [dm3] 2L_661604_SNP [dm6]	T	C	2.143e^-5	0.648	INTRON ds	TF binding site mE1_TFBS_HSA
3R	15432152	3R_15432152_SNP [dm3] 3R_19606430_SNP [dm6]	G	T	2.224e^-5	0.658	UTR_3_PRIME CG7342 UPSTREAM CG17751
2L	7999346	2L_7999346_SNP [dm3] 2L_7999346_SNP [dm6]	A	C	2.266e^-5	0.658	SYNONYMOUS_CODING Sirup DOWNSTREAM Wwox	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23543677	3R_23543677_SNP [dm3] 3R_27717955_SNP [dm6]	T	C	2.289e^-5	0.658	INTERGENIC
3R	13266858	3R_13266858_SNP [dm3] 3R_17441136_SNP [dm6]	G	A	2.325e^-5	0.658	UPSTREAM CG14331 INTRON CG5873
X	11231972	X_11231972_SNP [dm3] X_11337939_SNP [dm6]	A	C	2.351e^-5	0.658	INTRON Kap3	TF binding site mE1_TFBS_Kr
2L	9750547	2L_9750547_SNP [dm3] 2L_9750547_SNP [dm6]	A	C	2.481e^-5	0.684	UPSTREAM Cyp4e3 INTERGENIC
2L	1167143	2L_1167143_SNP [dm3] 2L_1167143_SNP [dm6]	A	C	2.663e^-5	0.689	NON_SYNONYMOUS_CODING CG14341 DOWNSTREAM Plap & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	21529933	3L_21529933_SNP [dm3] 3L_21536833_SNP [dm6]	C	T	2.665e^-5	0.689	NON_SYNONYMOUS_CODING ppk5 UPSTREAM Rpn10 DOWNSTREAM ppk5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2L	13432445	2L_13432445_SNP [dm3] 2L_13432445_SNP [dm6]	C	G	2.761e^-5	0.689	INTRON CG42784
2L	7386299	2L_7386299_SNP [dm3] 2L_7386299_SNP [dm6]	T	C	2.874e^-5	0.689	INTRON CG5149	TF binding site BDTNP1_TFBS_twi
3L	21616732	3L_21616732_SNP [dm3] 3L_21623632_SNP [dm6]	T	C	2.891e^-5	0.689	INTRON CG7166
X	6393486	X_6393486_SNP [dm3] X_6499453_SNP [dm6]	A	G	2.937e^-5	0.689	INTRON CG42340
2L	12601134	2L_12601134_SNP [dm3] 2L_12601134_SNP [dm6]	A	G	2.954e^-5	0.689	INTRON nub	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15186044	2L_15186044_SNP [dm3] 2L_15186044_SNP [dm6]	C	T	3.028e^-5	0.689	INTRON CG4168
3R	23141622	3R_23141622_SNP [dm3] 3R_27315900_SNP [dm6]	G	A	3.051e^-5	0.689	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	16140338	X_16140338_SNP [dm3] X_16246305_SNP [dm6]	T	C	3.064e^-5	0.689	INTERGENIC
2L	19266605	2L_19266605_SNP [dm3] 2L_19266605_SNP [dm6]	A	C	3.085e^-5	0.689	INTERGENIC
2R	5821195	2R_5821195_SNP [dm3] 2R_9933690_SNP [dm6]	T	A	3.125e^-5	0.689	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	22608772	3L_22608772_SNP [dm3] 3L_22615672_SNP [dm6]	G	A	3.132e^-5	0.689	INTRON CG14459	TF binding site mE1_TFBS_sens
3L	21617909	3L_21617909_SNP [dm3] 3L_21624809_SNP [dm6]	T	G	3.142e^-5	0.689	UPSTREAM CG11306 INTRON CG7166
3L	5801975	3L_5801975_SNP [dm3] 3L_5808875_SNP [dm6]	C	T	3.169e^-5	0.689	INTRON S6k	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
2L	9942290	2L_9942290_SNP [dm3] 2L_9942290_SNP [dm6]	G	A	3.182e^-5	0.689	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619	TF binding site mE1_TFBS_HSA
2L	15240228	2L_15240228_SNP [dm3] 2L_15240228_SNP [dm6]	T	G	3.223e^-5	0.689	INTRON ZnT35C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18570060	3R_18570060_SNP [dm3] 3R_22744338_SNP [dm6]	A	G	3.231e^-5	0.689	SYNONYMOUS_CODING vret	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15244000	2L_15244000_SNP [dm3] 2L_15244000_SNP [dm6]	T	C	3.240e^-5	0.689	INTRON ZnT35C
X	6393470	X_6393470_SNP [dm3] X_6499437_SNP [dm6]	C	T	3.265e^-5	0.689	INTRON CG42340
2L	13852195	2L_13852195_SNP [dm3] 2L_13852195_SNP [dm6]	G	A	3.316e^-5	0.689	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	17805446	2L_17805446_SNP [dm3] 2L_17805446_SNP [dm6]	T	A	3.324e^-5	0.689	INTRON CadN2
2L	15186177	2L_15186177_SNP [dm3] 2L_15186177_SNP [dm6]	C	A	3.345e^-5	0.689	INTRON CG4168
2L	7997714	2L_7997714_DEL [dm3] 2L_7997714_DEL [dm6]	AGGTTGGA	A	3.439e^-5	0.7	UTR_5_PRIME CG7227 UPSTREAM CG7227
3L	21534649	3L_21534649_SNP [dm3] 3L_21541549_SNP [dm6]	A	G	3.469e^-5	0.7	UPSTREAM CG33290 DOWNSTREAM VhaM9.7-b INTERGENIC
X	4939933	X_4939933_SNP [dm3] X_5045900_SNP [dm6]	C	T	3.620e^-5	0.722	INTRON CR44833	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	15240076	2L_15240076_DEL [dm3] 2L_15240076_DEL [dm6]	AA	A	3.816e^-5	0.753	INTRON ZnT35C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15186219	2L_15186219_SNP [dm3] 2L_15186219_SNP [dm6]	A	G	4.072e^-5	0.759	INTRON CG4168
2L	13841692	2L_13841692_SNP [dm3] 2L_13841692_SNP [dm6]	G	T	4.193e^-5	0.759	UPSTREAM CG33307 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3R	21728606	3R_21728606_SNP [dm3] 3R_25902884_SNP [dm6]	T	A	4.210e^-5	0.759	DOWNSTREAM CG31091 INTRON CG31089 EXON CR43259
2R	16896834	2R_16896834_SNP [dm3] 2R_21009329_SNP [dm6]	G	A	4.239e^-5	0.759	SYNONYMOUS_CODING CG30291 DOWNSTREAM grau	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	16076165	2L_16076165_SNP [dm3] 2L_16076165_SNP [dm6]	C	A	4.364e^-5	0.759	INTRON beat-Ia
2R	7359147	2R_7359147_SNP [dm3] 2R_11471642_SNP [dm6]	T	G	4.368e^-5	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1166874	2L_1166874_SNP [dm3] 2L_1166874_SNP [dm6]	A	G	4.372e^-5	0.759	SYNONYMOUS_CODING CG14341 DOWNSTREAM Plap & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4658375	2L_4658375_SNP [dm3] 2L_4658375_SNP [dm6]	G	C	4.427e^-5	0.759	INTERGENIC
2L	7595939	2L_7595939_SNP [dm3] 2L_7595939_SNP [dm6]	G	A	4.428e^-5	0.759	INTERGENIC
2L	13429625	2L_13429625_SNP [dm3] 2L_13429625_SNP [dm6]	G	C	4.436e^-5	0.759	INTRON CG42784	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	15489993	3R_15489993_SNP [dm3] 3R_19664271_SNP [dm6]	C	A	4.462e^-5	0.759	UPSTREAM CG7432 DOWNSTREAM ort INTERGENIC
2L	15940222	2L_15940222_INS [dm3] 2L_15940222_INS [dm6]	G	GTT	4.519e^-5	0.759	INTRON beat-Ib	TF binding site BDTNP1_TFBS_twi
2L	15240079	2L_15240079_SNP [dm3] 2L_15240079_SNP [dm6]	A	G	4.526e^-5	0.759	INTRON ZnT35C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22014825	3R_22014825_SNP [dm3] 3R_26189103_SNP [dm6]	T	G	4.571e^-5	0.759	SYNONYMOUS_CODING CG34130 UPSTREAM CG6073	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14293873	2R_14293873_SNP [dm3] 2R_18406368_SNP [dm6]	C	A	4.576e^-5	0.759	SYNONYMOUS_CODING GstE6 UPSTREAM GstE7	TF binding site mE1_TFBS_cnc mE1_TFBS_sens mE1_TFBS_Trl
2L	13432570	2L_13432570_SNP [dm3] 2L_13432570_SNP [dm6]	T	C	4.581e^-5	0.759	INTRON CG42784
X	16140339	X_16140339_SNP [dm3] X_16246306_SNP [dm6]	T	A	4.592e^-5	0.759	INTERGENIC
2L	18509246	2L_18509246_SNP [dm3] 2L_18509246_SNP [dm6]	A	G	4.602e^-5	0.759	UPSTREAM CG10178 INTERGENIC
2L	15240234	2L_15240234_SNP [dm3] 2L_15240234_SNP [dm6]	C	A	4.633e^-5	0.759	INTRON ZnT35C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17031744	3L_17031744_SNP [dm3] 3L_17038644_SNP [dm6]	C	T	4.652e^-5	0.759	SYNONYMOUS_CODING scaf6 UTR_3_PRIME scaf6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5759742	3L_5759742_SNP [dm3] 3L_5766642_SNP [dm6]	G	C	4.718e^-5	0.763	SYNONYMOUS_CODING Txl UPSTREAM CG10576 DOWNSTREAM Ppat-Dpck	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	18022352	3L_18022352_SNP [dm3] 3L_18029252_SNP [dm6]	G	T	4.816e^-5	0.763	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13186623	3R_13186623_SNP [dm3] 3R_17360901_SNP [dm6]	G	A	4.906e^-5	0.763	INTRON beat-IIa
2L	13852078	2L_13852078_SNP [dm3] 2L_13852078_SNP [dm6]	T	C	5.000e^-5	0.763	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	15940230	2L_15940230_SNP [dm3] 2L_15940230_SNP [dm6]	G	A	5.005e^-5	0.763	INTRON beat-Ib	TF binding site BDTNP1_TFBS_twi
3L	21272395	3L_21272395_SNP [dm3] 3L_21279295_SNP [dm6]	G	A	5.011e^-5	0.763	INTRON AcCoAS	TF binding site mE1_TFBS_sens
2L	15239072	2L_15239072_INS [dm3] 2L_15239072_INS [dm6]	A	ACAGGAGACGACGAAG...	5.141e^-5	0.763	INTRON ZnT35C
3R	3344832	3R_3344832_SNP [dm3] 3R_7519110_SNP [dm6]	C	T	5.144e^-5	0.763	SYNONYMOUS_CODING Ubc84D DOWNSTREAM alpha-Est7
2L	7142049	2L_7142049_SNP [dm3] 2L_7142049_SNP [dm6]	A	G	5.163e^-5	0.763	UPSTREAM CR44612 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15240219	2L_15240219_SNP [dm3] 2L_15240219_SNP [dm6]	C	T	5.191e^-5	0.763	INTRON ZnT35C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21728998	3R_21728998_SNP [dm3] 3R_25903276_SNP [dm6]	T	A	5.212e^-5	0.763	SYNONYMOUS_CODING CG31089 INTRON CR43259
X	5365746	X_5365746_SNP [dm3] X_5471713_SNP [dm6]	T	C	5.242e^-5	0.763	INTRON SPR
2L	15240241	2L_15240241_MNP [dm3] 2L_15240241_MNP [dm6]	GAA	CCG	5.323e^-5	0.763	INTRON ZnT35C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17813363	2L_17813363_SNP [dm3] 2L_17813363_SNP [dm6]	G	A	5.354e^-5	0.763	UPSTREAM CG42830 INTRON CadN2
3L	8403402	3L_8403402_SNP [dm3] 3L_8410302_SNP [dm6]	G	A	5.435e^-5	0.763	SYNONYMOUS_CODING Oseg1	TF binding site mE1_TFBS_sens
2L	15223897	2L_15223897_SNP [dm3] 2L_15223897_SNP [dm6]	C	T	5.449e^-5	0.763	INTERGENIC
3R	15158666	3R_15158666_DEL [dm3] 3R_19332944_DEL [dm6]	TGGCTAT	T	5.458e^-5	0.763	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15243988	2L_15243988_SNP [dm3] 2L_15243988_SNP [dm6]	A	T	5.470e^-5	0.763	INTRON ZnT35C
2L	18509249	2L_18509249_SNP [dm3] 2L_18509249_SNP [dm6]	G	A	5.559e^-5	0.763	UPSTREAM CG10178 INTERGENIC
2L	15240144	2L_15240144_SNP [dm3] 2L_15240144_SNP [dm6]	A	T	5.562e^-5	0.763	INTRON ZnT35C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15240152	2L_15240152_SNP [dm3] 2L_15240152_SNP [dm6]	G	A	5.562e^-5	0.763	INTRON ZnT35C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	4008015	2R_4008015_SNP [dm3] 2R_8120510_SNP [dm6]	C	A	5.588e^-5	0.763	INTRON Asap
3L	7946354	3L_7946354_SNP [dm3] 3L_7953254_SNP [dm6]	C	G	5.616e^-5	0.763	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22787411	3L_22787411_SNP [dm3] 3L_22794311_SNP [dm6]	G	C	5.818e^-5	0.774	UTR_3_PRIME jim
2L	1166501	2L_1166501_SNP [dm3] 2L_1166501_SNP [dm6]	G	T	5.875e^-5	0.774	UPSTREAM CG14341 DOWNSTREAM Plap & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	11998382	X_11998382_SNP [dm3] X_12104349_SNP [dm6]	A	T	5.936e^-5	0.774	UPSTREAM CG11356 INTRON CR43960 & 1 other
2R	16593148	2R_16593148_SNP [dm3] 2R_20705643_SNP [dm6]	C	T	6.001e^-5	0.774	INTRON dpr
3R	13722552	3R_13722552_SNP [dm3] 3R_17896830_SNP [dm6]	T	C	6.017e^-5	0.774	INTRON Rim
2L	3019411	2L_3019411_SNP [dm3] 2L_3019411_SNP [dm6]	G	A	6.024e^-5	0.774	SPLICE_SITE_REGION CG17264 INTRON CG17264	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	17813381	2L_17813381_SNP [dm3] 2L_17813381_SNP [dm6]	G	T	6.030e^-5	0.774	UPSTREAM CG42830 INTRON CadN2
2L	16519498	2L_16519498_SNP [dm3] 2L_16519498_SNP [dm6]	A	G	6.055e^-5	0.774	INTRON CG5953
2R	2455958	2R_2455958_SNP [dm3] 2R_6568453_SNP [dm6]	C	T	6.130e^-5	0.774	INTRON jing
2R	13440315	2R_13440315_SNP [dm3] 2R_17552810_SNP [dm6]	C	T	6.133e^-5	0.774	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7803147	3L_7803147_SNP [dm3] 3L_7810047_SNP [dm6]	G	A	6.146e^-5	0.774	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11547174	3L_11547174_SNP [dm3] 3L_11554074_SNP [dm6]	T	A	6.285e^-5	0.781	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13432446	2L_13432446_SNP [dm3] 2L_13432446_SNP [dm6]	A	G	6.355e^-5	0.781	INTRON CG42784
2L	3601421	2L_3601421_SNP [dm3] 2L_3601421_SNP [dm6]	G	A	6.384e^-5	0.781	INTERGENIC	TF binding site mE1_TFBS_sens
2L	13432484	2L_13432484_SNP [dm3] 2L_13432484_SNP [dm6]	C	G	6.468e^-5	0.781	INTRON CG42784
3L	21618109	3L_21618109_SNP [dm3] 3L_21625009_SNP [dm6]	G	A	6.522e^-5	0.781	UPSTREAM CG11306 INTRON CG7166
3R	25936970	3R_25936970_INS [dm3] 3R_30111248_INS [dm6]	C	CCGTGACACCAGC...	6.533e^-5	0.781	INTRON sima
2L	15240130	2L_15240130_INS [dm3] 2L_15240130_INS [dm6]	A	ACAAGTGCATGA...	6.551e^-5	0.781	INTRON ZnT35C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13862322	2L_13862322_SNP [dm3] 2L_13862322_SNP [dm6]	G	T	6.737e^-5	0.781	INTRON CenG1A	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
3L	7927084	3L_7927084_SNP [dm3] 3L_7933984_SNP [dm6]	C	A	6.755e^-5	0.781	SPLICE_SITE_DONOR syd INTRON syd	TF binding site mE1_TFBS_cad
2R	14294251	2R_14294251_SNP [dm3] 2R_18406746_SNP [dm6]	T	A	6.786e^-5	0.781	UTR_3_PRIME GstE6 UPSTREAM GstE7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	13862310	2L_13862310_DEL [dm3] 2L_13862310_DEL [dm6]	ATCCAACTTAA...	A	6.829e^-5	0.781	INTRON CenG1A	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
2L	15239074	2L_15239074_SNP [dm3] 2L_15239074_SNP [dm6]	C	T	6.864e^-5	0.781	INTRON ZnT35C
3L	11546880	3L_11546880_DEL [dm3] 3L_11553780_DEL [dm6]	TCTCATAAATATATTGCCAT...	C	6.929e^-5	0.781	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	22673648	3L_22673648_SNP [dm3] 3L_22680548_SNP [dm6]	G	C	6.932e^-5	0.781	DOWNSTREAM CG14457 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14294220	2R_14294220_SNP [dm3] 2R_18406715_SNP [dm6]	A	T	6.952e^-5	0.781	UTR_3_PRIME GstE6 UPSTREAM GstE7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	23019695	3L_23019695_SNP [dm3] 3L_23026595_SNP [dm6]	C	G	6.998e^-5	0.781	NON_SYNONYMOUS_CODING nrm INTRON nrm
3R	13558948	3R_13558948_SNP [dm3] 3R_17733226_SNP [dm6]	G	A	7.002e^-5	0.781	UPSTREAM CG14321 DOWNSTREAM Lgr1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	21711965	3R_21711965_SNP [dm3] 3R_25886243_SNP [dm6]	C	A	7.042e^-5	0.781	INTRON SppL
2L	19266633	2L_19266633_SNP [dm3] 2L_19266633_SNP [dm6]	T	C	7.053e^-5	0.781	INTERGENIC
3L	21616716	3L_21616716_SNP [dm3] 3L_21623616_SNP [dm6]	G	C	7.078e^-5	0.781	INTRON CG7166
3L	5888696	3L_5888696_SNP [dm3] 3L_5895596_SNP [dm6]	T	C	7.080e^-5	0.781	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5365743	X_5365743_SNP [dm3] X_5471710_SNP [dm6]	T	A	7.178e^-5	0.785	INTRON SPR
3L	21649514	3L_21649514_SNP [dm3] 3L_21656414_SNP [dm6]	G	C	7.202e^-5	0.785	INTRON CG43980
3L	5759819	3L_5759819_SNP [dm3] 3L_5766719_SNP [dm6]	A	G	7.249e^-5	0.786	SPLICE_SITE_REGION Txl DOWNSTREAM Ppat-Dpck INTRON Txl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	16738165	3R_16738165_SNP [dm3] 3R_20912443_SNP [dm6]	A	G	7.302e^-5	0.787	SYNONYMOUS_CODING CG31191 DOWNSTREAM snoRNA:CG31191-a EXON CR44106
3R	13558929	3R_13558929_SNP [dm3] 3R_17733207_SNP [dm6]	C	A	7.440e^-5	0.793	UTR_3_PRIME Lgr1 UPSTREAM CG14321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	13558947	3R_13558947_SNP [dm3] 3R_17733225_SNP [dm6]	T	C	7.440e^-5	0.793	UPSTREAM CG14321 DOWNSTREAM Lgr1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
2L	16293645	2L_16293645_SNP [dm3] 2L_16293645_SNP [dm6]	A	G	7.557e^-5	0.798	UPSTREAM CG13258 & 1 other EXON CR44899
3R	12736238	3R_12736238_SNP [dm3] 3R_16910516_SNP [dm6]	G	T	7.573e^-5	0.798	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	15153244	2L_15153244_SNP [dm3] 2L_15153244_SNP [dm6]	T	A	7.688e^-5	0.802	INTERGENIC
2L	7999574	2L_7999574_SNP [dm3] 2L_7999574_SNP [dm6]	C	T	7.767e^-5	0.802	UTR_3_PRIME Sirup DOWNSTREAM Wwox	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13466787	3R_13466787_SNP [dm3] 3R_17641065_SNP [dm6]	A	C	7.804e^-5	0.802	INTRON CG43175
X	11240590	X_11240590_SNP [dm3] X_11346557_SNP [dm6]	A	G	7.818e^-5	0.802	SYNONYMOUS_CODING CG1597	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21711969	3R_21711969_SNP [dm3] 3R_25886247_SNP [dm6]	C	A	7.846e^-5	0.802	INTRON SppL
3R	16738716	3R_16738716_SNP [dm3] 3R_20912994_SNP [dm6]	C	G	7.872e^-5	0.802	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6301268	2L_6301268_SNP [dm3] 2L_6301268_SNP [dm6]	G	C	7.910e^-5	0.802	NON_SYNONYMOUS_CODING Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13952604	2L_13952604_SNP [dm3] 2L_13952604_SNP [dm6]	C	G	8.073e^-5	0.814	INTRON Ance-3
2R	16593180	2R_16593180_DEL [dm3] 2R_20705675_DEL [dm6]	TA	T	8.164e^-5	0.818	INTRON dpr
2R	14294342	2R_14294342_SNP [dm3] 2R_18406837_SNP [dm6]	C	T	8.195e^-5	0.818	UPSTREAM GstE7 & 1 other DOWNSTREAM GstE6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13466781	3R_13466781_SNP [dm3] 3R_17641059_SNP [dm6]	T	A	8.313e^-5	0.821	INTRON CG43175
X	17923393	X_17923393_SNP [dm3] X_18029360_SNP [dm6]	G	T	8.316e^-5	0.821	INTRON Sh
2R	19155976	2R_19155976_SNP [dm3] 2R_23268453_SNP [dm6]	T	G	8.543e^-5	0.839	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	18508730	2L_18508730_SNP [dm3] 2L_18508730_SNP [dm6]	T	C	8.628e^-5	0.843	UPSTREAM CG10178 INTERGENIC
X	11998415	X_11998415_SNP [dm3] X_12104382_SNP [dm6]	G	A	8.684e^-5	0.844	UPSTREAM CG11356 INTRON CR43960 & 1 other
2L	19278286	2L_19278286_SNP [dm3] 2L_19278286_SNP [dm6]	C	A	8.791e^-5	0.844	INTERGENIC
3R	15432037	3R_15432037_SNP [dm3] 3R_19606315_SNP [dm6]	G	C	8.830e^-5	0.844	UTR_3_PRIME CG7342 UPSTREAM CG17751
3L	21978047	3L_21978047_SNP [dm3] 3L_21984947_SNP [dm6]	G	T	8.862e^-5	0.844	UPSTREAM Act79B DOWNSTREAM CG7470 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	6989229	3L_6989229_SNP [dm3] 3L_6996129_SNP [dm6]	C	A	8.868e^-5	0.844	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_inv mE1_TFBS_zfh1
3L	21873219	3L_21873219_DEL [dm3] 3L_21880119_DEL [dm6]	TTGCTGT	T	9.162e^-5	0.852	INTRON mub	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	16533329	X_16533329_SNP [dm3] X_16639296_SNP [dm6]	C	A	9.194e^-5	0.852	DOWNSTREAM SmG & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	18896501	3R_18896501_SNP [dm3] 3R_23070779_SNP [dm6]	A	G	9.259e^-5	0.852	UTR_3_PRIME CG13830
3R	9871771	3R_9871771_SNP [dm3] 3R_14046049_SNP [dm6]	A	T	9.305e^-5	0.852	INTERGENIC
3L	22623849	3L_22623849_SNP [dm3] 3L_22630749_SNP [dm6]	G	C	9.337e^-5	0.852	INTRON CG14459
2L	16754844	2L_16754844_SNP [dm3] 2L_16754844_SNP [dm6]	G	A	9.338e^-5	0.852	INTRON yellow-b
2L	1167124	2L_1167124_SNP [dm3] 2L_1167124_SNP [dm6]	T	A	9.436e^-5	0.852	NON_SYNONYMOUS_CODING CG14341 DOWNSTREAM Plap & 1 other	TF binding site mE1_TFBS_chinmo
3R	13212272	3R_13212272_INS [dm3] 3R_17386550_INS [dm6]	A	AA	9.437e^-5	0.852	INTRON Brf & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
X	8210962	X_8210962_SNP [dm3] X_8316929_SNP [dm6]	A	T	9.471e^-5	0.852	INTRON nAChRalpha3
2R	2838012	2R_2838012_SNP [dm3] 2R_6950507_SNP [dm6]	C	A	9.553e^-5	0.852	SYNONYMOUS_CODING ppk25 DOWNSTREAM CheB42a INTRON mim & 1 other
3L	5888766	3L_5888766_SNP [dm3] 3L_5895666_SNP [dm6]	T	A	9.605e^-5	0.852	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3721482	X_3721482_SNP [dm3] X_3827449_SNP [dm6]	A	G	9.628e^-5	0.852	UPSTREAM tRNA:P:3E & 1 other INTRON ec
X	10770677	X_10770677_SNP [dm3] X_10876644_SNP [dm6]	A	T	9.640e^-5	0.852	INTRON CG1637
2L	1166904	2L_1166904_SNP [dm3] 2L_1166904_SNP [dm6]	C	T	9.641e^-5	0.852	SYNONYMOUS_CODING CG14341 DOWNSTREAM Plap & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14762802	2R_14762802_SNP [dm3] 2R_18875297_SNP [dm6]	G	A	9.641e^-5	0.852	INTERGENIC
3R	3816262	3R_3816262_SNP [dm3] 3R_7990540_SNP [dm6]	C	G	9.700e^-5	0.852	INTRON CG2781
3L	22526175	3L_22526175_SNP [dm3] 3L_22533075_SNP [dm6]	G	C	9.716e^-5	0.852	INTERGENIC	transposable element FlyBase
3R	22014589	3R_22014589_SNP [dm3] 3R_26188867_SNP [dm6]	T	G	9.842e^-5	0.856	UPSTREAM CG6073 DOWNSTREAM CG34130 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	17084344	3R_17084344_SNP [dm3] 3R_21258622_SNP [dm6]	C	T	9.863e^-5	0.856	UTR_5_PRIME ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8148443	2L_8148443_SNP [dm3] 2L_8148443_SNP [dm6]	A	T	9.911e^-5	0.857	UPSTREAM CG43394 DOWNSTREAM CG31606 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4814337	2L_4814337_SNP [dm3] 2L_4814337_SNP [dm6]	T	C	9.970e^-5	0.858	INTRON CG15629
2L	13828872	2L_13828872_SNP [dm3] 2L_13828872_SNP [dm6]	G	A	1.013e^-4	0.858	SYNONYMOUS_CODING Arpc1 UPSTREAM Orc5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	22484633	3L_22484633_SNP [dm3] 3L_22491533_SNP [dm6]	G	T	1.015e^-4	0.858	INTERGENIC
3R	21726417	3R_21726417_SNP [dm3] 3R_25900695_SNP [dm6]	A	G	1.026e^-4	0.858	SYNONYMOUS_CODING CG31091 DOWNSTREAM MCO3
2L	4815216	2L_4815216_SNP [dm3] 2L_4815216_SNP [dm6]	G	A	1.026e^-4	0.858	SYNONYMOUS_CODING CG15629 DOWNSTREAM CG3225
2R	14762776	2R_14762776_SNP [dm3] 2R_18875271_SNP [dm6]	C	T	1.027e^-4	0.858	INTERGENIC
2L	6389836	2L_6389836_SNP [dm3] 2L_6389836_SNP [dm6]	G	C	1.028e^-4	0.858	INTRON CG42368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13432431	2L_13432431_SNP [dm3] 2L_13432431_SNP [dm6]	A	T	1.030e^-4	0.858	INTRON CG42784
2L	15937948	2L_15937948_SNP [dm3] 2L_15937948_SNP [dm6]	C	T	1.035e^-4	0.859	INTRON beat-Ib
X	5079585	X_5079585_DEL [dm3] X_5185552_DEL [dm6]	ATAGGAGAAGC...	A	1.043e^-4	0.862	INTRON rg & 1 other
2L	18526758	2L_18526758_SNP [dm3] 2L_18526758_SNP [dm6]	G	T	1.062e^-4	0.872	INTRON CG10211	TF binding site mE1_TFBS_cad
2L	13319279	2L_13319279_SNP [dm3] 2L_13319279_SNP [dm6]	G	T	1.065e^-4	0.872	INTRON CG43778	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	13266943	3R_13266943_SNP [dm3] 3R_17441221_SNP [dm6]	T	A	1.083e^-4	0.88	UPSTREAM CG14331 INTRON CG5873
3R	21726847	3R_21726847_SNP [dm3] 3R_25901125_SNP [dm6]	C	G	1.084e^-4	0.88	SYNONYMOUS_CODING CG31091
3R	18305789	3R_18305789_SNP [dm3] 3R_22480067_SNP [dm6]	T	A	1.103e^-4	0.883	UPSTREAM mir-4952 INTRON Nrx-1
3R	13559226	3R_13559226_INS [dm3] 3R_17733504_INS [dm6]	T	TATACT	1.105e^-4	0.883	UPSTREAM CG14321 DOWNSTREAM Lgr1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	5075914	X_5075914_SNP [dm3] X_5181881_SNP [dm6]	C	T	1.105e^-4	0.883	SYNONYMOUS_CODING CG5062 INTRON rg & 1 other
2L	551066	2L_551066_SNP [dm3] 2L_551066_SNP [dm6]	T	A	1.116e^-4	0.883	INTRON Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	19578395	3L_19578395_SNP [dm3] 3L_19585295_SNP [dm6]	C	T	1.120e^-4	0.883	UTR_3_PRIME CG9231 UPSTREAM Shal & 1 other	TF binding site BDTNP1_TFBS_dl
X	11998220	X_11998220_SNP [dm3] X_12104187_SNP [dm6]	G	A	1.124e^-4	0.883	UPSTREAM CG11356 INTRON CR43960 & 1 other
2L	13881870	2L_13881870_INS [dm3] 2L_13881870_INS [dm6]	C	CGAAAGTCTC	1.129e^-4	0.883	INTRON CenG1A
X	7431386	X_7431386_SNP [dm3] X_7537353_SNP [dm6]	G	A	1.130e^-4	0.883	UPSTREAM CG32720 INTRON CG32719	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	18896522	3R_18896522_SNP [dm3] 3R_23070800_SNP [dm6]	A	G	1.131e^-4	0.883	UTR_3_PRIME CG13830
3R	12644954	3R_12644954_SNP [dm3] 3R_16819232_SNP [dm6]	G	A	1.141e^-4	0.883	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Kr
3R	13266936	3R_13266936_SNP [dm3] 3R_17441214_SNP [dm6]	T	C	1.146e^-4	0.883	UPSTREAM CG14331 INTRON CG5873
3R	22723082	3R_22723082_SNP [dm3] 3R_26897360_SNP [dm6]	C	T	1.148e^-4	0.883	INTRON T48	regulatory region REDfly_CRMs
2R	3345344	2R_3345344_SNP [dm3] 2R_7457839_SNP [dm6]	G	T	1.148e^-4	0.883	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	22537488	3L_22537488_SNP [dm3] 3L_22544388_SNP [dm6]	C	A	1.166e^-4	0.886	INTERGENIC
3R	20775094	3R_20775094_SNP [dm3] 3R_24949372_SNP [dm6]	T	C	1.167e^-4	0.886	NON_SYNONYMOUS_CODING CG13646
3L	22045433	3L_22045433_SNP [dm3] 3L_22052333_SNP [dm6]	C	T	1.173e^-4	0.886	INTRON Oct-TyrR
3L	6532070	3L_6532070_SNP [dm3] 3L_6538970_SNP [dm6]	T	C	1.181e^-4	0.886	INTRON sfl
2R	14294337	2R_14294337_SNP [dm3] 2R_18406832_SNP [dm6]	C	A	1.185e^-4	0.886	UPSTREAM GstE7 DOWNSTREAM GstE6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	21616754	3L_21616754_SNP [dm3] 3L_21623654_SNP [dm6]	T	A	1.185e^-4	0.886	INTRON CG7166
2L	1166919	2L_1166919_SNP [dm3] 2L_1166919_SNP [dm6]	A	G	1.185e^-4	0.886	SYNONYMOUS_CODING CG14341 DOWNSTREAM Plap & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6342010	3L_6342010_SNP [dm3] 3L_6348910_SNP [dm6]	T	C	1.200e^-4	0.887	INTRON CG13300
2L	18526749	2L_18526749_SNP [dm3] 2L_18526749_SNP [dm6]	C	A	1.214e^-4	0.887	INTRON CG10211	TF binding site mE1_TFBS_cad
2L	18526756	2L_18526756_SNP [dm3] 2L_18526756_SNP [dm6]	C	T	1.214e^-4	0.887	INTRON CG10211	TF binding site mE1_TFBS_cad
3R	23719563	3R_23719563_SNP [dm3] 3R_27893841_SNP [dm6]	C	T	1.218e^-4	0.887	INTRON CG34353
3R	18500508	3R_18500508_SNP [dm3] 3R_22674786_SNP [dm6]	A	G	1.219e^-4	0.887	SYNONYMOUS_CODING CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	9750542	2L_9750542_SNP [dm3] 2L_9750542_SNP [dm6]	C	G	1.221e^-4	0.887	UPSTREAM Cyp4e3 INTERGENIC
2L	10315657	2L_10315657_SNP [dm3] 2L_10315657_SNP [dm6]	C	T	1.225e^-4	0.887	SYNONYMOUS_CODING CG4972	TF binding site mE1_TFBS_sens
2L	13862365	2L_13862365_SNP [dm3] 2L_13862365_SNP [dm6]	G	T	1.225e^-4	0.887	INTRON CenG1A	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
2L	5151871	2L_5151871_SNP [dm3] 2L_5151871_SNP [dm6]	G	T	1.233e^-4	0.889	UTR_5_PRIME Msp300 INTRON Msp300	TF binding site mE1_TFBS_inv
2L	15244011	2L_15244011_DEL [dm3] 2L_15244011_DEL [dm6]	AAA	T	1.239e^-4	0.889	INTRON ZnT35C
2L	13862366	2L_13862366_SNP [dm3] 2L_13862366_SNP [dm6]	A	G	1.242e^-4	0.889	INTRON CenG1A	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
3L	3107074	3L_3107074_SNP [dm3] 3L_3107074_SNP [dm6]	G	C	1.248e^-4	0.89	UPSTREAM Cht7 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19138998	X_19138998_SNP [dm3] X_19244965_SNP [dm6]	C	T	1.262e^-4	0.893	UTR_3_PRIME CG7889 DOWNSTREAM CG7992
3R	27199924	3R_27199924_DEL [dm3] 3R_31374202_DEL [dm6]	AA	A	1.268e^-4	0.893	DOWNSTREAM gskt INTERGENIC
3R	16738726	3R_16738726_SNP [dm3] 3R_20913004_SNP [dm6]	C	A	1.276e^-4	0.893	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6342008	3L_6342008_SNP [dm3] 3L_6348908_SNP [dm6]	C	T	1.276e^-4	0.893	INTRON CG13300
X	1349908	X_1349908_SNP [dm3] X_1455875_SNP [dm6]	G	A	1.278e^-4	0.893	SYNONYMOUS_CODING CG14785	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12513583	X_12513583_SNP [dm3] X_12619550_SNP [dm6]	G	T	1.290e^-4	0.893	INTRON CG11085
2R	8865000	2R_8865000_SNP [dm3] 2R_12977495_SNP [dm6]	C	A	1.299e^-4	0.893	SYNONYMOUS_CODING Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3017395	X_3017395_SNP [dm3] X_3123362_SNP [dm6]	G	A	1.306e^-4	0.893	INTRON kirre
2L	15219017	2L_15219017_SNP [dm3] 2L_15219017_SNP [dm6]	C	G	1.313e^-4	0.893	INTERGENIC
3L	2148439	3L_2148439_SNP [dm3] 3L_2148439_SNP [dm6]	G	T	1.318e^-4	0.893	INTRON zormin
3R	10738719	3R_10738719_SNP [dm3] 3R_14912997_SNP [dm6]	T	C	1.324e^-4	0.893	INTERGENIC
2L	3230637	2L_3230637_SNP [dm3] 2L_3230637_SNP [dm6]	G	A	1.324e^-4	0.893	INTERGENIC
3L	5811625	3L_5811625_SNP [dm3] 3L_5818525_SNP [dm6]	T	C	1.330e^-4	0.893	INTRON vn
3L	23222892	3L_23222892_SNP [dm3] 3L_23229792_SNP [dm6]	A	G	1.331e^-4	0.893	INTRON nAChRalpha4	transposable element FlyBase
2L	15226239	2L_15226239_SNP [dm3] 2L_15226239_SNP [dm6]	A	C	1.333e^-4	0.893	INTERGENIC
3L	21529925	3L_21529925_SNP [dm3] 3L_21536825_SNP [dm6]	G	T	1.349e^-4	0.893	NON_SYNONYMOUS_CODING ppk5 UPSTREAM Rpn10 DOWNSTREAM ppk5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2L	15213728	2L_15213728_SNP [dm3] 2L_15213728_SNP [dm6]	T	C	1.352e^-4	0.893	INTERGENIC
3L	23223468	3L_23223468_SNP [dm3] 3L_23230368_SNP [dm6]	A	T	1.359e^-4	0.893	INTRON nAChRalpha4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	1884243	2L_1884243_SNP [dm3] 2L_1884243_SNP [dm6]	T	C	1.369e^-4	0.893	UPSTREAM CG7337 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	22526235	3L_22526235_SNP [dm3] 3L_22533135_SNP [dm6]	C	A	1.372e^-4	0.893	INTERGENIC	transposable element FlyBase
3R	667649	3R_667649_SNP [dm3] 3R_4841927_SNP [dm6]	C	T	1.372e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	10226008	3R_10226008_SNP [dm3] 3R_14400286_SNP [dm6]	A	G	1.378e^-4	0.893	INTRON cv-c	TF binding site mE1_TFBS_Trl
3L	4680935	3L_4680935_SNP [dm3] 3L_4680935_SNP [dm6]	T	C	1.381e^-4	0.893	INTRON axo
2L	15195535	2L_15195535_INS [dm3] 2L_15195535_INS [dm6]	T	CC	1.386e^-4	0.893	INTRON CG4168
2L	14780722	2L_14780722_SNP [dm3] 2L_14780722_SNP [dm6]	C	A	1.387e^-4	0.893	DOWNSTREAM CR15280 INTERGENIC
2L	16999029	2L_16999029_SNP [dm3] 2L_16999029_SNP [dm6]	T	C	1.402e^-4	0.893	DOWNSTREAM CR45356 & 1 other INTERGENIC
2R	6471155	2R_6471155_SNP [dm3] 2R_10583650_SNP [dm6]	C	A	1.406e^-4	0.893	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25946291	3R_25946291_SNP [dm3] 3R_30120569_SNP [dm6]	G	A	1.408e^-4	0.893	SYNONYMOUS_CODING sima UTR_3_PRIME sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1527041	3L_1527041_SNP [dm3] 3L_1527041_SNP [dm6]	T	G	1.413e^-4	0.893	INTRON CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	9485838	2L_9485838_SNP [dm3] 2L_9485838_SNP [dm6]	T	C	1.414e^-4	0.893	INTERGENIC
X	18986159	X_18986159_SNP [dm3] X_19092126_SNP [dm6]	A	G	1.421e^-4	0.893	INTERGENIC
3R	25576867	3R_25576867_SNP [dm3] 3R_29751145_SNP [dm6]	A	C	1.425e^-4	0.893	SYNONYMOUS_CODING yata	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7135915	2L_7135915_SNP [dm3] 2L_7135915_SNP [dm6]	T	C	1.438e^-4	0.893	INTRON Pvf3	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	25080671	3R_25080671_SNP [dm3] 3R_29254949_SNP [dm6]	A	G	1.440e^-4	0.893	UTR_5_PRIME stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	18022368	3L_18022368_SNP [dm3] 3L_18029268_SNP [dm6]	T	A	1.450e^-4	0.893	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3250711	2L_3250711_SNP [dm3] 2L_3250711_SNP [dm6]	G	T	1.450e^-4	0.893	INTERGENIC
X	3965364	X_3965364_SNP [dm3] X_4071331_SNP [dm6]	A	C	1.453e^-4	0.893	INTERGENIC
2L	15879500	2L_15879500_SNP [dm3] 2L_15879500_SNP [dm6]	A	G	1.462e^-4	0.893	UTR_5_PRIME CG7653
2L	15212795	2L_15212795_SNP [dm3] 2L_15212795_SNP [dm6]	A	C	1.463e^-4	0.893	INTERGENIC
2L	13862377	2L_13862377_SNP [dm3] 2L_13862377_SNP [dm6]	A	T	1.469e^-4	0.893	INTRON CenG1A	TF binding site BDTNP1_TFBS_da mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
2L	16293643	2L_16293643_SNP [dm3] 2L_16293643_SNP [dm6]	A	T	1.476e^-4	0.893	UPSTREAM CG13258 & 1 other EXON CR44899
3L	21967362	3L_21967362_SNP [dm3] 3L_21974262_SNP [dm6]	C	A	1.484e^-4	0.893	INTRON CG7470
2L	8392666	2L_8392666_SNP [dm3] 2L_8392666_SNP [dm6]	G	A	1.487e^-4	0.893	SYNONYMOUS_CODING Acp29AB UPSTREAM CG42820 DOWNSTREAM lectin-29Ca	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	21567395	3L_21567395_SNP [dm3] 3L_21574295_SNP [dm6]	T	A	1.489e^-4	0.893	UPSTREAM CG32441 DOWNSTREAM Smc5 & 1 other INTRON CG32441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_zfh1
3L	22529402	3L_22529402_SNP [dm3] 3L_22536302_SNP [dm6]	G	A	1.505e^-4	0.893	INTERGENIC
2R	13109548	2R_13109548_SNP [dm3] 2R_17222043_SNP [dm6]	A	C	1.514e^-4	0.893	INTRON mbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	13862355	2L_13862355_SNP [dm3] 2L_13862355_SNP [dm6]	T	C	1.524e^-4	0.893	INTRON CenG1A	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
2R	9755631	2R_9755631_SNP [dm3] 2R_13868126_SNP [dm6]	G	T	1.530e^-4	0.893	INTRON shot
2L	10102497	2L_10102497_SNP [dm3] 2L_10102497_SNP [dm6]	T	G	1.533e^-4	0.893	INTRON CG44153 & 1 other
X	11998263	X_11998263_SNP [dm3] X_12104230_SNP [dm6]	G	A	1.535e^-4	0.893	UPSTREAM CG11356 INTRON CR43960 & 1 other
3R	9496221	3R_9496221_SNP [dm3] 3R_13670499_SNP [dm6]	T	C	1.537e^-4	0.893	INTRON Task6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	4144646	3L_4144646_SNP [dm3] 3L_4144646_SNP [dm6]	A	T	1.545e^-4	0.893	SYNONYMOUS_CODING CG32260	TF binding site mE1_TFBS_HSA
2L	15286702	2L_15286702_SNP [dm3] 2L_15286702_SNP [dm6]	G	T	1.549e^-4	0.893	DOWNSTREAM CG15263 INTERGENIC
3L	22484572	3L_22484572_SNP [dm3] 3L_22491472_SNP [dm6]	G	A	1.550e^-4	0.893	INTERGENIC
2L	3089899	2L_3089899_SNP [dm3] 2L_3089899_SNP [dm6]	T	C	1.554e^-4	0.893	SYNONYMOUS_CODING toc INTRON toc	TF binding site mE1_TFBS_HSA
2L	15240039	2L_15240039_SNP [dm3] 2L_15240039_SNP [dm6]	G	C	1.555e^-4	0.893	INTRON ZnT35C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6844425	2R_6844425_DEL [dm3] 2R_10956920_DEL [dm6]	TTTCGTTTTTTCGAAA...	T	1.559e^-4	0.893	INTERGENIC
3R	15432031	3R_15432031_INS [dm3] 3R_19606309_INS [dm6]	A	AGGTATTTA	1.563e^-4	0.893	UTR_3_PRIME CG7342 UPSTREAM CG17751
2L	15240250	2L_15240250_SNP [dm3] 2L_15240250_SNP [dm6]	A	G	1.566e^-4	0.893	INTRON ZnT35C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	22082677	3L_22082677_SNP [dm3] 3L_22089577_SNP [dm6]	T	C	1.572e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12620075	3L_12620075_SNP [dm3] 3L_12626975_SNP [dm6]	G	A	1.573e^-4	0.893	UPSTREAM CR32111 INTERGENIC
3L	4061669	3L_4061669_SNP [dm3] 3L_4061669_SNP [dm6]	G	T	1.578e^-4	0.893	NON_SYNONYMOUS_CODING CG18869 UPSTREAM dib	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	9489948	2L_9489948_SNP [dm3] 2L_9489948_SNP [dm6]	G	A	1.578e^-4	0.893	INTERGENIC
3L	14512611	3L_14512611_SNP [dm3] 3L_14519511_SNP [dm6]	T	G	1.582e^-4	0.893	DOWNSTREAM CG4613 INTRON bbg
2R	16345008	2R_16345008_SNP [dm3] 2R_20457503_SNP [dm6]	A	G	1.587e^-4	0.893	INTRON CG12484	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25944691	3R_25944691_SNP [dm3] 3R_30118969_SNP [dm6]	A	G	1.588e^-4	0.893	INTRON sima
3L	16451329	3L_16451329_SNP [dm3] 3L_16458229_SNP [dm6]	C	T	1.591e^-4	0.893	INTRON CG33158
3L	22854871	3L_22854871_SNP [dm3] 3L_22861771_SNP [dm6]	C	G	1.594e^-4	0.893	DOWNSTREAM CG13239 INTERGENIC
2R	5811781	2R_5811781_SNP [dm3] 2R_9924276_SNP [dm6]	A	T	1.599e^-4	0.893	INTRON Mef2
2L	15228351	2L_15228351_SNP [dm3] 2L_15228351_SNP [dm6]	A	T	1.606e^-4	0.893	DOWNSTREAM ZnT35C INTERGENIC
2L	547147	2L_547147_SNP [dm3] 2L_547147_SNP [dm6]	G	T	1.609e^-4	0.893	UTR_3_PRIME Ets21C DOWNSTREAM nAChRbeta3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	21725883	3R_21725883_SNP [dm3] 3R_25900161_SNP [dm6]	T	G	1.614e^-4	0.893	UTR_5_PRIME CG31091 UPSTREAM CG31091 DOWNSTREAM MCO3
3R	13558883	3R_13558883_SNP [dm3] 3R_17733161_SNP [dm6]	G	T	1.621e^-4	0.893	UTR_3_PRIME Lgr1 UPSTREAM CG14321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
2L	18510730	2L_18510730_SNP [dm3] 2L_18510730_SNP [dm6]	G	T	1.625e^-4	0.893	INTRON CG10178
3R	16738762	3R_16738762_SNP [dm3] 3R_20913040_SNP [dm6]	T	A	1.625e^-4	0.893	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8263420	3L_8263420_SNP [dm3] 3L_8270320_SNP [dm6]	T	A	1.627e^-4	0.893	INTRON Dscam4
3L	8263424	3L_8263424_SNP [dm3] 3L_8270324_SNP [dm6]	A	T	1.627e^-4	0.893	INTRON Dscam4
2R	7723007	2R_7723007_SNP [dm3] 2R_11835502_SNP [dm6]	G	A	1.628e^-4	0.893	INTRON Sobp	TF binding site mE1_TFBS_cad
2L	10311325	2L_10311325_SNP [dm3] 2L_10311325_SNP [dm6]	A	G	1.636e^-4	0.893	UTR_3_PRIME CG5385 UPSTREAM Cdk5alpha DOWNSTREAM CG5384	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	17127677	3L_17127677_SNP [dm3] 3L_17134577_SNP [dm6]	C	T	1.647e^-4	0.893	INTRON Rbp6
2L	13911300	2L_13911300_SNP [dm3] 2L_13911300_SNP [dm6]	G	T	1.649e^-4	0.893	UPSTREAM Acyp INTRON Ance-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21725748	3R_21725748_SNP [dm3] 3R_25900026_SNP [dm6]	A	G	1.667e^-4	0.893	UTR_5_PRIME CG31091 UPSTREAM CG31091 DOWNSTREAM MCO3
2L	1167041	2L_1167041_SNP [dm3] 2L_1167041_SNP [dm6]	G	A	1.673e^-4	0.893	NON_SYNONYMOUS_CODING CG14341 DOWNSTREAM Plap & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	3300407	2R_3300407_SNP [dm3] 2R_7412902_SNP [dm6]	T	G	1.677e^-4	0.893	INTERGENIC
3R	3203124	3R_3203124_SNP [dm3] 3R_7377402_SNP [dm6]	A	G	1.694e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15432039	3R_15432039_SNP [dm3] 3R_19606317_SNP [dm6]	C	G	1.695e^-4	0.893	UTR_3_PRIME CG7342 UPSTREAM CG17751
3L	11650677	3L_11650677_SNP [dm3] 3L_11657577_SNP [dm6]	G	T	1.696e^-4	0.893	DOWNSTREAM mir-274 INTRON CG32085
X	4939984	X_4939984_SNP [dm3] X_5045951_SNP [dm6]	T	C	1.701e^-4	0.893	INTRON CR44833	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	18022354	3L_18022354_SNP [dm3] 3L_18029254_SNP [dm6]	G	T	1.704e^-4	0.893	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3886543	2L_3886543_SNP [dm3] 2L_3886543_SNP [dm6]	C	A	1.705e^-4	0.893	INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	18367064	2R_18367064_SNP [dm3] 2R_22479559_SNP [dm6]	G	T	1.710e^-4	0.893	INTRON CG4752
3R	16738779	3R_16738779_SNP [dm3] 3R_20913057_SNP [dm6]	T	A	1.727e^-4	0.893	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8971362	2L_8971362_SNP [dm3] 2L_8971362_SNP [dm6]	A	G	1.730e^-4	0.893	SYNONYMOUS_CODING CG9541 DOWNSTREAM CG18088
2L	15217484	2L_15217484_DEL [dm3] 2L_15217484_DEL [dm6]	CCCCCTTTC	C	1.733e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_inv
3R	25369382	3R_25369382_SNP [dm3] 3R_29543660_SNP [dm6]	T	A	1.736e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2L	15240117	2L_15240117_SNP [dm3] 2L_15240117_SNP [dm6]	T	A	1.740e^-4	0.893	INTRON ZnT35C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	14317966	X_14317966_SNP [dm3] X_14423933_SNP [dm6]	G	A	1.741e^-4	0.893	INTRON dpr8
3R	25250322	3R_25250322_SNP [dm3] 3R_29424600_SNP [dm6]	C	T	1.741e^-4	0.893	SYNONYMOUS_CODING Ptp99A
2L	4356675	2L_4356675_SNP [dm3] 2L_4356675_SNP [dm6]	A	C	1.746e^-4	0.893	INTERGENIC
3R	25194788	3R_25194788_SNP [dm3] 3R_29369066_SNP [dm6]	G	T	1.749e^-4	0.893	UPSTREAM CG45546 INTERGENIC
3R	14450474	3R_14450474_SNP [dm3] 3R_18624752_SNP [dm6]	G	A	1.749e^-4	0.893	INTRON qin
2L	4018124	2L_4018124_SNP [dm3] 2L_4018124_SNP [dm6]	T	C	1.756e^-4	0.893	INTERGENIC
3R	10884040	3R_10884040_SNP [dm3] 3R_15058318_SNP [dm6]	G	A	1.757e^-4	0.893	INTRON dpr9
3L	6351122	3L_6351122_SNP [dm3] 3L_6358022_SNP [dm6]	C	G	1.761e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3019447	2L_3019447_SNP [dm3] 2L_3019447_SNP [dm6]	T	C	1.762e^-4	0.893	INTRON CG17264	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	9814601	2L_9814601_SNP [dm3] 2L_9814601_SNP [dm6]	G	T	1.764e^-4	0.893	INTRON nAChRalpha6
X	6494977	X_6494977_SNP [dm3] X_6600944_SNP [dm6]	T	C	1.765e^-4	0.893	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16738773	3R_16738773_SNP [dm3] 3R_20913051_SNP [dm6]	A	T	1.767e^-4	0.893	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	19669998	X_19669998_SNP [dm3] X_19775965_SNP [dm6]	T	A	1.774e^-4	0.893	DOWNSTREAM vfl INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	21456317	3R_21456317_INS [dm3] 3R_25630595_INS [dm6]	C	CC	1.780e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21955027	3L_21955027_SNP [dm3] 3L_21961927_SNP [dm6]	C	A	1.789e^-4	0.893	UPSTREAM CS-2 EXON CR45757	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	1.795e^-4	0.893	INTERGENIC
3R	16738759	3R_16738759_SNP [dm3] 3R_20913037_SNP [dm6]	G	A	1.803e^-4	0.893	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7249543	2L_7249543_SNP [dm3] 2L_7249543_SNP [dm6]	C	T	1.803e^-4	0.893	UPSTREAM Ndae1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16738690	3R_16738690_SNP [dm3] 3R_20912968_SNP [dm6]	G	T	1.820e^-4	0.893	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16345034	2R_16345034_SNP [dm3] 2R_20457529_SNP [dm6]	G	C	1.825e^-4	0.893	INTRON CG12484	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	21729440	3R_21729440_SNP [dm3] 3R_25903718_SNP [dm6]	C	G	1.826e^-4	0.893	SYNONYMOUS_CODING CG31089 INTRON CR43259
3R	16826273	3R_16826273_SNP [dm3] 3R_21000551_SNP [dm6]	T	A	1.827e^-4	0.893	INTRON Calx
2L	8002618	2L_8002618_DEL [dm3] 2L_8002618_DEL [dm6]	TT	T	1.835e^-4	0.893	INTRON Wwox
2L	15229742	2L_15229742_SNP [dm3] 2L_15229742_SNP [dm6]	A	G	1.839e^-4	0.893	INTRON ZnT35C
3L	8247836	3L_8247836_SNP [dm3] 3L_8254736_SNP [dm6]	G	A	1.849e^-4	0.893	INTRON Dscam4
2L	2682132	2L_2682132_SNP [dm3] 2L_2682132_SNP [dm6]	G	C	1.855e^-4	0.893	INTRON CG31690
2L	16293639	2L_16293639_SNP [dm3] 2L_16293639_SNP [dm6]	A	T	1.865e^-4	0.893	UPSTREAM CG13258 & 1 other EXON CR44899
3L	24487602	3L_24487602_SNP [dm3] 3L_24494502_SNP [dm6]	A	T	1.866e^-4	0.893	INTERGENIC
2R	6987213	2R_6987213_SNP [dm3] 2R_11099708_SNP [dm6]	C	A	1.873e^-4	0.893	UTR_5_PRIME luna
3R	15390715	3R_15390715_SNP [dm3] 3R_19564993_SNP [dm6]	G	T	1.873e^-4	0.893	INTRON Dys
2R	14762811	2R_14762811_DEL [dm3] 2R_18875306_DEL [dm6]	GGAAAAC	CTTTT	1.879e^-4	0.893	INTERGENIC
X	21785378	X_21785378_SNP [dm3] X_22383545_SNP [dm6]	G	A	1.880e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3R	23718743	3R_23718743_SNP [dm3] 3R_27893021_SNP [dm6]	G	A	1.891e^-4	0.893	INTRON CG34353
2R	18240210	2R_18240210_SNP [dm3] 2R_22352705_SNP [dm6]	G	A	1.899e^-4	0.893	INTRON Liprin-gamma
2R	14294335	2R_14294335_SNP [dm3] 2R_18406830_SNP [dm6]	A	T	1.902e^-4	0.893	UPSTREAM GstE7 DOWNSTREAM GstE6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14578533	2R_14578533_SNP [dm3] 2R_18691028_SNP [dm6]	G	T	1.902e^-4	0.893	INTRON Sik3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22044615	3L_22044615_SNP [dm3] 3L_22051515_SNP [dm6]	C	T	1.904e^-4	0.893	INTRON Oct-TyrR
2R	16281396	2R_16281396_SNP [dm3] 2R_20393891_SNP [dm6]	A	C	1.907e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21259860	X_21259860_SNP [dm3] X_21388833_SNP [dm6]	T	G	1.910e^-4	0.893	UPSTREAM Hlc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25369375	3R_25369375_SNP [dm3] 3R_29543653_SNP [dm6]	T	A	1.912e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3R	16738642	3R_16738642_INS [dm3] 3R_20912920_INS [dm6]	A	AA	1.918e^-4	0.893	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1136575	3L_1136575_SNP [dm3] 3L_1136575_SNP [dm6]	T	G	1.939e^-4	0.893	INTERGENIC
X	22309905	X_22309905_SNP [dm3] X_22908069_SNP [dm6]	C	T	1.942e^-4	0.893	INTERGENIC	transposable element FlyBase
3L	23223568	3L_23223568_SNP [dm3] 3L_23230468_SNP [dm6]	C	A	1.944e^-4	0.893	INTRON nAChRalpha4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	4939897	X_4939897_SNP [dm3] X_5045864_SNP [dm6]	A	T	1.944e^-4	0.893	INTRON CR44833	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	8587000	2R_8587000_SNP [dm3] 2R_12699495_SNP [dm6]	A	G	1.949e^-4	0.893	UPSTREAM wuc INTERGENIC
X	17320472	X_17320472_SNP [dm3] X_17426439_SNP [dm6]	T	C	1.951e^-4	0.893	INTRON CG12994 & 1 other
2R	18587068	2R_18587068_SNP [dm3] 2R_22699563_SNP [dm6]	T	C	1.952e^-4	0.893	INTRON robo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	6475597	3R_6475597_SNP [dm3] 3R_10649875_SNP [dm6]	G	C	1.962e^-4	0.893	INTERGENIC
2L	7975747	2L_7975747_SNP [dm3] 2L_7975747_SNP [dm6]	A	G	1.965e^-4	0.893	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16751976	2L_16751976_INS [dm3] 2L_16751976_INS [dm6]	T	TTTTACATTTTTT...	1.970e^-4	0.893	UTR_3_PRIME CG17912
2L	11391713	2L_11391713_SNP [dm3] 2L_11391713_SNP [dm6]	G	C	1.975e^-4	0.893	INTRON CR43681	regulatory region REDfly_CRMs
3R	25321020	3R_25321020_SNP [dm3] 3R_29495298_SNP [dm6]	G	T	1.989e^-4	0.893	INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	8447931	3L_8447931_SNP [dm3] 3L_8454831_SNP [dm6]	G	A	1.991e^-4	0.893	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1269172	2L_1269172_SNP [dm3] 2L_1269172_SNP [dm6]	C	T	2.000e^-4	0.893	INTRON robo3
2L	15299224	2L_15299224_SNP [dm3] 2L_15299224_SNP [dm6]	T	C	2.002e^-4	0.893	SYNONYMOUS_CODING CG15262
X	20348218	X_20348218_SNP [dm3] X_20477191_SNP [dm6]	T	C	2.005e^-4	0.893	SPLICE_SITE_REGION RhoGAP19D INTRON RhoGAP19D
2R	12994703	2R_12994703_SNP [dm3] 2R_17107198_SNP [dm6]	C	T	2.006e^-4	0.893	UTR_3_PRIME CG30456	TF binding site mE1_TFBS_cad
2L	13851945	2L_13851945_SNP [dm3] 2L_13851945_SNP [dm6]	G	A	2.026e^-4	0.893	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13852335	2L_13852335_SNP [dm3] 2L_13852335_SNP [dm6]	A	T	2.026e^-4	0.893	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	18852800	2R_18852800_SNP [dm3] 2R_22965277_SNP [dm6]	C	A	2.029e^-4	0.893	INTERGENIC
2L	13432501	2L_13432501_SNP [dm3] 2L_13432501_SNP [dm6]	G	A	2.033e^-4	0.893	INTRON CG42784
3R	25215059	3R_25215059_SNP [dm3] 3R_29389337_SNP [dm6]	G	A	2.034e^-4	0.893	INTRON Ptp99A
2R	17668235	2R_17668235_SNP [dm3] 2R_21780730_SNP [dm6]	T	G	2.038e^-4	0.893	INTERGENIC
3R	16738663	3R_16738663_DEL [dm3] 3R_20912941_DEL [dm6]	TC	T	2.039e^-4	0.893	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13232349	2R_13232349_SNP [dm3] 2R_17344844_SNP [dm6]	A	T	2.040e^-4	0.893	INTRON mbl
3R	18304841	3R_18304841_SNP [dm3] 3R_22479119_SNP [dm6]	A	G	2.057e^-4	0.893	SYNONYMOUS_CODING Nrx-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21725864	3R_21725864_SNP [dm3] 3R_25900142_SNP [dm6]	A	G	2.063e^-4	0.893	UTR_5_PRIME CG31091 UPSTREAM CG31091 DOWNSTREAM MCO3
2L	3199993	2L_3199993_SNP [dm3] 2L_3199993_SNP [dm6]	G	A	2.065e^-4	0.893	UPSTREAM CG34393 INTRON CG34393
2L	551072	2L_551072_SNP [dm3] 2L_551072_SNP [dm6]	A	C	2.067e^-4	0.893	INTRON Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13323704	3R_13323704_SNP [dm3] 3R_17497982_SNP [dm6]	G	T	2.070e^-4	0.893	INTRON Dscam3
2R	19502631	2R_19502631_SNP [dm3] 2R_23615108_SNP [dm6]	T	C	2.074e^-4	0.893	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
2R	12262005	2R_12262005_SNP [dm3] 2R_16374500_SNP [dm6]	A	G	2.074e^-4	0.893	INTERGENIC
3L	8585070	3L_8585070_SNP [dm3] 3L_8591970_SNP [dm6]	G	A	2.077e^-4	0.893	NON_SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12093853	2L_12093853_SNP [dm3] 2L_12093853_SNP [dm6]	A	C	2.085e^-4	0.893	UTR_5_PRIME Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	2697359	X_2697359_SNP [dm3] X_2803326_SNP [dm6]	G	A	2.094e^-4	0.893	INTRON kirre
X	9339800	X_9339800_INS [dm3] X_9445767_INS [dm6]	G	GCAAACTG	2.094e^-4	0.893	DOWNSTREAM CG44815 INTRON mgl
3R	25341053	3R_25341053_SNP [dm3] 3R_29515331_SNP [dm6]	A	C	2.098e^-4	0.893	UPSTREAM CG2014 INTERGENIC
2R	19615554	2R_19615554_SNP [dm3] 2R_23728031_SNP [dm6]	G	T	2.108e^-4	0.893	INTRON Sesn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12789948	2R_12789948_SNP [dm3] 2R_16902443_SNP [dm6]	T	A	2.108e^-4	0.893	DOWNSTREAM inaC INTERGENIC
2L	15238862	2L_15238862_SNP [dm3] 2L_15238862_SNP [dm6]	A	C	2.110e^-4	0.893	INTRON ZnT35C
3R	25211830	3R_25211830_SNP [dm3] 3R_29386108_SNP [dm6]	A	G	2.122e^-4	0.893	INTRON Ptp99A
2R	19674023	2R_19674023_SNP [dm3] 2R_23786500_SNP [dm6]	G	A	2.154e^-4	0.893	INTRON CG9850
X	21916350	X_21916350_SNP [dm3] X_22514514_SNP [dm6]	G	C	2.159e^-4	0.893	UPSTREAM CG17600 DOWNSTREAM CR43962 EXON CR43962
3R	13558954	3R_13558954_SNP [dm3] 3R_17733232_SNP [dm6]	A	C	2.160e^-4	0.893	UPSTREAM CG14321 DOWNSTREAM Lgr1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	21728610	3R_21728610_SNP [dm3] 3R_25902888_SNP [dm6]	A	T	2.162e^-4	0.893	DOWNSTREAM CG31091 INTRON CG31089 EXON CR43259
3L	16738356	3L_16738356_SNP [dm3] 3L_16745256_SNP [dm6]	G	A	2.163e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	2269461	3L_2269461_SNP [dm3] 3L_2269461_SNP [dm6]	G	A	2.168e^-4	0.893	NON_SYNONYMOUS_CODING CG32302 DOWNSTREAM obst-I & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	3279639	3L_3279639_SNP [dm3] 3L_3279639_SNP [dm6]	T	A	2.170e^-4	0.893	UPSTREAM CG12017 INTERGENIC
2L	6407682	2L_6407682_SNP [dm3] 2L_6407682_SNP [dm6]	G	A	2.180e^-4	0.893	INTRON CG42368
3R	15432160	3R_15432160_INS [dm3] 3R_19606438_INS [dm6]	T	TAAGAAGT	2.186e^-4	0.893	UTR_3_PRIME CG7342 UPSTREAM CG17751
2L	7247586	2L_7247586_SNP [dm3] 2L_7247586_SNP [dm6]	T	C	2.196e^-4	0.893	INTRON Ndae1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17939862	3R_17939862_SNP [dm3] 3R_22114140_SNP [dm6]	T	A	2.197e^-4	0.893	SYNONYMOUS_CODING Ir94a
3L	11547201	3L_11547201_SNP [dm3] 3L_11554101_SNP [dm6]	T	A	2.200e^-4	0.893	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	19266594	2L_19266594_SNP [dm3] 2L_19266594_SNP [dm6]	A	G	2.203e^-4	0.893	INTERGENIC
2R	15289107	2R_15289107_SNP [dm3] 2R_19401602_SNP [dm6]	C	T	2.204e^-4	0.893	DOWNSTREAM hts & 1 other INTRON hts
2L	3089908	2L_3089908_SNP [dm3] 2L_3089908_SNP [dm6]	A	G	2.210e^-4	0.893	SYNONYMOUS_CODING toc INTRON toc	TF binding site mE1_TFBS_HSA
X	16441719	X_16441719_SNP [dm3] X_16547686_SNP [dm6]	A	G	2.211e^-4	0.893	UPSTREAM CG9902 DOWNSTREAM Arp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	11998372	X_11998372_SNP [dm3] X_12104339_SNP [dm6]	A	G	2.228e^-4	0.893	UPSTREAM CG11356 INTRON CR43960 & 1 other
2R	12331179	2R_12331179_SNP [dm3] 2R_16443674_SNP [dm6]	A	C	2.238e^-4	0.893	NON_SYNONYMOUS_CODING CG4409
3R	7415959	3R_7415959_SNP [dm3] 3R_11590237_SNP [dm6]	A	G	2.240e^-4	0.893	UPSTREAM CG6791 DOWNSTREAM Jupiter INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15968130	2L_15968130_SNP [dm3] 2L_15968130_SNP [dm6]	C	T	2.245e^-4	0.893	INTERGENIC
2L	16447574	2L_16447574_SNP [dm3] 2L_16447574_SNP [dm6]	A	C	2.247e^-4	0.893	DOWNSTREAM Idgf1 INTRON CG5888 & 1 other
X	14711237	X_14711237_SNP [dm3] X_14817204_SNP [dm6]	A	C	2.252e^-4	0.893	INTRON rut
3L	2923357	3L_2923357_SNP [dm3] 3L_2923357_SNP [dm6]	T	C	2.257e^-4	0.893	INTRON Shab
3L	10670491	3L_10670491_SNP [dm3] 3L_10677391_SNP [dm6]	T	G	2.261e^-4	0.893	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1166742	2L_1166742_SNP [dm3] 2L_1166742_SNP [dm6]	G	A	2.269e^-4	0.893	SYNONYMOUS_CODING CG14341 DOWNSTREAM Plap & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15857978	X_15857978_SNP [dm3] X_15963945_SNP [dm6]	A	C	2.269e^-4	0.893	SYNONYMOUS_CODING mmd
2L	15213716	2L_15213716_SNP [dm3] 2L_15213716_SNP [dm6]	C	T	2.271e^-4	0.893	INTERGENIC
3L	21511738	3L_21511738_SNP [dm3] 3L_21518638_SNP [dm6]	A	G	2.272e^-4	0.893	SYNONYMOUS_CODING Cdk12
X	2695915	X_2695915_SNP [dm3] X_2801882_SNP [dm6]	A	G	2.278e^-4	0.893	INTRON kirre	insulator Insulator_Class_II.mE01
3R	10249130	3R_10249130_SNP [dm3] 3R_14423408_SNP [dm6]	T	C	2.283e^-4	0.893	UPSTREAM CR44176 INTRON cv-c
3R	3815588	3R_3815588_SNP [dm3] 3R_7989866_SNP [dm6]	C	A	2.286e^-4	0.893	INTRON CG2781
X	6093897	X_6093897_SNP [dm3] X_6199864_SNP [dm6]	T	A	2.289e^-4	0.893	START_GAINED CG43090 UTR_5_PRIME CG43090 DOWNSTREAM vanin-like
X	16533830	X_16533830_SNP [dm3] X_16639797_SNP [dm6]	T	G	2.291e^-4	0.893	DOWNSTREAM SmG & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	1230499	X_1230499_SNP [dm3] X_1336466_SNP [dm6]	C	A	2.314e^-4	0.893	INTRON CG11409	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18960945	3R_18960945_SNP [dm3] 3R_23135223_SNP [dm6]	C	T	2.314e^-4	0.893	INTRON hh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	8534489	2R_8534489_SNP [dm3] 2R_12646984_SNP [dm6]	A	G	2.322e^-4	0.893	INTRON CG8785
3L	21638540	3L_21638540_SNP [dm3] 3L_21645440_SNP [dm6]	A	C	2.328e^-4	0.893	UTR_5_PRIME CG43980	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	25216194	3R_25216194_SNP [dm3] 3R_29390472_SNP [dm6]	C	T	2.329e^-4	0.893	INTRON Ptp99A
3R	14157423	3R_14157423_SNP [dm3] 3R_18331701_SNP [dm6]	T	C	2.349e^-4	0.893	UTR_3_PRIME CG15803	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	15213723	2L_15213723_SNP [dm3] 2L_15213723_SNP [dm6]	A	C	2.350e^-4	0.893	INTERGENIC
X	7062577	X_7062577_SNP [dm3] X_7168544_SNP [dm6]	C	G	2.364e^-4	0.893	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12668796	2R_12668796_SNP [dm3] 2R_16781291_SNP [dm6]	T	C	2.371e^-4	0.893	SYNONYMOUS_CODING resilin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	11151503	3R_11151503_SNP [dm3] 3R_15325781_SNP [dm6]	G	T	2.375e^-4	0.893	NON_SYNONYMOUS_CODING CG6236 DOWNSTREAM ear
3L	17285884	3L_17285884_SNP [dm3] 3L_17292784_SNP [dm6]	T	G	2.376e^-4	0.893	INTERGENIC
2L	3886500	2L_3886500_DEL [dm3] 2L_3886500_DEL [dm6]	TT	T	2.381e^-4	0.893	INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	3815693	3R_3815693_SNP [dm3] 3R_7989971_SNP [dm6]	T	C	2.385e^-4	0.893	INTRON CG2781
X	11407530	X_11407530_SNP [dm3] X_11513497_SNP [dm6]	T	G	2.386e^-4	0.893	INTRON Drak
2L	9942717	2L_9942717_SNP [dm3] 2L_9942717_SNP [dm6]	C	A	2.387e^-4	0.893	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619
2L	9748336	2L_9748336_SNP [dm3] 2L_9748336_SNP [dm6]	A	T	2.388e^-4	0.893	SYNONYMOUS_CODING Cyp4e3
2L	8172960	2L_8172960_SNP [dm3] 2L_8172960_SNP [dm6]	G	A	2.398e^-4	0.893	INTRON Piezo
3R	16268740	3R_16268740_DEL [dm3] 3R_20443018_DEL [dm6]	CAT	C	2.411e^-4	0.893	INTRON Gfrl
2L	10673376	2L_10673376_SNP [dm3] 2L_10673376_SNP [dm6]	G	T	2.424e^-4	0.893	INTERGENIC
2L	8002775	2L_8002775_SNP [dm3] 2L_8002775_SNP [dm6]	A	G	2.427e^-4	0.893	INTRON Wwox
3L	2923342	3L_2923342_SNP [dm3] 3L_2923342_SNP [dm6]	A	G	2.431e^-4	0.893	INTRON Shab
3L	11547204	3L_11547204_INS [dm3] 3L_11554104_INS [dm6]	A	AAAACGTAGTTT...	2.438e^-4	0.893	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	4700836	X_4700836_DEL [dm3] X_4806803_DEL [dm6]	AA	A	2.439e^-4	0.893	INTERGENIC
X	6926643	X_6926643_INS [dm3] X_7032610_INS [dm6]	T	TT	2.440e^-4	0.893	INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22485151	3L_22485151_SNP [dm3] 3L_22492051_SNP [dm6]	T	C	2.444e^-4	0.893	INTERGENIC
2R	18240209	2R_18240209_SNP [dm3] 2R_22352704_SNP [dm6]	G	A	2.444e^-4	0.893	INTRON Liprin-gamma
3R	13267030	3R_13267030_SNP [dm3] 3R_17441308_SNP [dm6]	T	A	2.455e^-4	0.893	SYNONYMOUS_CODING CG5873 UPSTREAM CG14331
2L	7246498	2L_7246498_SNP [dm3] 2L_7246498_SNP [dm6]	C	G	2.464e^-4	0.893	INTRON Ndae1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	18698003	3R_18698003_SNP [dm3] 3R_22872281_SNP [dm6]	T	C	2.467e^-4	0.893	INTERGENIC
3L	16552902	3L_16552902_SNP [dm3] 3L_16559802_SNP [dm6]	G	A	2.467e^-4	0.893	INTERGENIC
3L	18022389	3L_18022389_SNP [dm3] 3L_18029289_SNP [dm6]	T	G	2.471e^-4	0.893	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25216584	3R_25216584_SNP [dm3] 3R_29390862_SNP [dm6]	A	C	2.477e^-4	0.893	INTRON Ptp99A
3R	15432566	3R_15432566_SNP [dm3] 3R_19606844_SNP [dm6]	T	C	2.477e^-4	0.893	UPSTREAM CG17751 DOWNSTREAM CG7342 INTERGENIC
2L	4235293	2L_4235293_SNP [dm3] 2L_4235293_SNP [dm6]	A	C	2.481e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16738212	3L_16738212_SNP [dm3] 3L_16745112_SNP [dm6]	C	A	2.482e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	5365744	X_5365744_SNP [dm3] X_5471711_SNP [dm6]	C	T	2.485e^-4	0.893	INTRON SPR
3L	8440579	3L_8440579_SNP [dm3] 3L_8447479_SNP [dm6]	C	G	2.487e^-4	0.893	INTRON CG6983
2R	13564548	2R_13564548_SNP [dm3] 2R_17677043_SNP [dm6]	G	C	2.488e^-4	0.893	INTRON Sema-1b
2L	7972037	2L_7972037_SNP [dm3] 2L_7972037_SNP [dm6]	A	G	2.500e^-4	0.893	INTRON Snoo
3L	18541649	3L_18541649_SNP [dm3] 3L_18548549_SNP [dm6]	G	A	2.502e^-4	0.893	INTERGENIC
3R	10506375	3R_10506375_SNP [dm3] 3R_14680653_SNP [dm6]	C	G	2.509e^-4	0.893	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	19118817	3L_19118817_SNP [dm3] 3L_19125717_SNP [dm6]	T	A	2.516e^-4	0.893	INTRON CG14082
X	16533565	X_16533565_SNP [dm3] X_16639532_SNP [dm6]	T	A	2.517e^-4	0.893	DOWNSTREAM SmG & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	15769968	2R_15769968_SNP [dm3] 2R_19882463_SNP [dm6]	G	C	2.519e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15905059	2L_15905059_SNP [dm3] 2L_15905059_SNP [dm6]	G	T	2.523e^-4	0.893	DOWNSTREAM beat-Ib INTERGENIC
3R	16131589	3R_16131589_SNP [dm3] 3R_20305867_SNP [dm6]	G	A	2.526e^-4	0.893	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
2L	2810747	2L_2810747_SNP [dm3] 2L_2810747_SNP [dm6]	C	T	2.527e^-4	0.893	INTRON daw	TF binding site mE1_TFBS_chinmo
2L	19266635	2L_19266635_SNP [dm3] 2L_19266635_SNP [dm6]	A	G	2.527e^-4	0.893	INTERGENIC
2R	4663942	2R_4663942_SNP [dm3] 2R_8776437_SNP [dm6]	C	T	2.531e^-4	0.893	INTERGENIC
3R	17295608	3R_17295608_SNP [dm3] 3R_21469886_SNP [dm6]	C	A	2.533e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D
3L	22529342	3L_22529342_SNP [dm3] 3L_22536242_SNP [dm6]	G	A	2.539e^-4	0.893	INTERGENIC
3R	24538573	3R_24538573_SNP [dm3] 3R_28712851_SNP [dm6]	G	A	2.543e^-4	0.893	INTRON htt
2R	18138980	2R_18138980_SNP [dm3] 2R_22251475_SNP [dm6]	T	C	2.544e^-4	0.893	INTRON dve
X	11004161	X_11004161_SNP [dm3] X_11110128_SNP [dm6]	C	G	2.546e^-4	0.893	NON_SYNONYMOUS_CODING Hsp60	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1166363	2L_1166363_SNP [dm3] 2L_1166363_SNP [dm6]	A	C	2.549e^-4	0.893	UTR_3_PRIME IntS14 UPSTREAM CG14341 DOWNSTREAM Plap	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	17112281	2R_17112281_SNP [dm3] 2R_21224776_SNP [dm6]	C	G	2.549e^-4	0.893	UPSTREAM ASPP INTRON ASPP
3R	14602645	3R_14602645_SNP [dm3] 3R_18776923_SNP [dm6]	G	A	2.565e^-4	0.893	INTRON CG7720
3R	7286323	3R_7286323_SNP [dm3] 3R_11460601_SNP [dm6]	T	G	2.567e^-4	0.893	UPSTREAM PGRP-LB INTRON CG17230
3R	7286329	3R_7286329_SNP [dm3] 3R_11460607_SNP [dm6]	C	A	2.567e^-4	0.893	UPSTREAM PGRP-LB INTRON CG17230
3R	7286362	3R_7286362_DEL [dm3] 3R_11460640_DEL [dm6]	GTTGATTAGGTCTTGT...	G	2.567e^-4	0.893	UPSTREAM PGRP-LB INTRON CG17230
3R	7286380	3R_7286380_DEL [dm3] 3R_11460658_DEL [dm6]	TCTTGAGTTGCTCTTCTTTC...	T	2.567e^-4	0.893	UPSTREAM PGRP-LB INTRON CG17230
3R	7286407	3R_7286407_SNP [dm3] 3R_11460685_SNP [dm6]	G	A	2.567e^-4	0.893	UPSTREAM PGRP-LB INTRON CG17230
3R	7286411	3R_7286411_DEL [dm3] 3R_11460689_DEL [dm6]	CACCACTTG	C	2.567e^-4	0.893	UPSTREAM PGRP-LB INTRON CG17230
3R	7286424	3R_7286424_DEL [dm3] 3R_11460702_DEL [dm6]	TTCTTAAATCCGCAGGTTAA...	T	2.567e^-4	0.893	UPSTREAM PGRP-LB INTRON CG17230
3R	24847020	3R_24847020_SNP [dm3] 3R_29021298_SNP [dm6]	A	T	2.587e^-4	0.893	UPSTREAM wat EXON CR44264
2R	9754591	2R_9754591_SNP [dm3] 2R_13867086_SNP [dm6]	A	T	2.591e^-4	0.893	INTRON shot
3R	18696292	3R_18696292_SNP [dm3] 3R_22870570_SNP [dm6]	C	T	2.592e^-4	0.893	INTERGENIC
X	16529790	X_16529790_SNP [dm3] X_16635757_SNP [dm6]	T	A	2.596e^-4	0.893	UPSTREAM Rok INTRON Rok
3R	15396568	3R_15396568_INS [dm3] 3R_19570846_INS [dm6]	T	TCCG	2.609e^-4	0.893	INTRON Dys	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	13429256	2L_13429256_SNP [dm3] 2L_13429256_SNP [dm6]	T	C	2.612e^-4	0.893	INTRON CG42784
2L	17813348	2L_17813348_SNP [dm3] 2L_17813348_SNP [dm6]	C	T	2.614e^-4	0.893	UPSTREAM CG42830 INTRON CadN2
3L	22660414	3L_22660414_SNP [dm3] 3L_22667314_SNP [dm6]	C	T	2.617e^-4	0.893	EXON CR43270	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22582681	3L_22582681_SNP [dm3] 3L_22589581_SNP [dm6]	T	G	2.620e^-4	0.893	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	17813322	2L_17813322_DEL [dm3] 2L_17813322_DEL [dm6]	ACCAGCCA	A	2.627e^-4	0.893	UPSTREAM CG42830 INTRON CadN2
2L	13429061	2L_13429061_SNP [dm3] 2L_13429061_SNP [dm6]	T	C	2.630e^-4	0.893	INTRON CG42784
X	19138984	X_19138984_SNP [dm3] X_19244951_SNP [dm6]	T	G	2.631e^-4	0.893	UTR_3_PRIME CG7889 DOWNSTREAM CG7992
3L	22627362	3L_22627362_SNP [dm3] 3L_22634262_SNP [dm6]	A	G	2.631e^-4	0.893	INTRON CG14459	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	21618137	3L_21618137_SNP [dm3] 3L_21625037_SNP [dm6]	C	A	2.631e^-4	0.893	UPSTREAM CG11306 INTRON CG7166
3R	7286327	3R_7286327_SNP [dm3] 3R_11460605_SNP [dm6]	G	T	2.633e^-4	0.893	UPSTREAM PGRP-LB INTRON CG17230
3R	14450475	3R_14450475_SNP [dm3] 3R_18624753_SNP [dm6]	A	C	2.639e^-4	0.893	INTRON qin
2L	13069531	2L_13069531_DEL [dm3] 2L_13069531_DEL [dm6]	AA	A	2.646e^-4	0.893	INTERGENIC
3R	18886192	3R_18886192_SNP [dm3] 3R_23060470_SNP [dm6]	A	G	2.656e^-4	0.893	SYNONYMOUS_CODING sav	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20252086	X_20252086_SNP [dm3] X_20381059_SNP [dm6]	A	G	2.661e^-4	0.893	INTERGENIC
2R	18138978	2R_18138978_SNP [dm3] 2R_22251473_SNP [dm6]	G	T	2.663e^-4	0.893	INTRON dve
3L	22631373	3L_22631373_SNP [dm3] 3L_22638273_SNP [dm6]	T	C	2.663e^-4	0.893	UPSTREAM CG14459 INTERGENIC
3L	21501118	3L_21501118_SNP [dm3] 3L_21508018_SNP [dm6]	C	G	2.674e^-4	0.894	UTR_5_PRIME M6 UPSTREAM Glg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	8000266	2L_8000266_SNP [dm3] 2L_8000266_SNP [dm6]	G	T	2.677e^-4	0.894	DOWNSTREAM Sirup INTRON Wwox	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	385855	X_385855_SNP [dm3] X_491822_SNP [dm6]	C	A	2.692e^-4	0.894	SYNONYMOUS_CODING CG17896	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9754905	2R_9754905_SNP [dm3] 2R_13867400_SNP [dm6]	A	G	2.710e^-4	0.894	INTRON shot
X	4498896	X_4498896_SNP [dm3] X_4604863_SNP [dm6]	C	G	2.711e^-4	0.894	INTRON CR32773
2L	17805271	2L_17805271_SNP [dm3] 2L_17805271_SNP [dm6]	C	A	2.715e^-4	0.894	INTRON CadN2
2L	3019553	2L_3019553_SNP [dm3] 2L_3019553_SNP [dm6]	G	C	2.716e^-4	0.894	SYNONYMOUS_CODING CG17264	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	4220244	3R_4220244_DEL [dm3] 3R_8394522_DEL [dm6]	TT	T	2.717e^-4	0.894	INTRON CG45263
3R	18536158	3R_18536158_SNP [dm3] 3R_22710436_SNP [dm6]	A	T	2.718e^-4	0.894	SYNONYMOUS_CODING CG4907 DOWNSTREAM wge	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	23222130	3L_23222130_SNP [dm3] 3L_23229030_SNP [dm6]	C	T	2.719e^-4	0.894	INTRON nAChRalpha4
2L	8148445	2L_8148445_SNP [dm3] 2L_8148445_SNP [dm6]	A	C	2.719e^-4	0.894	UPSTREAM CG43394 DOWNSTREAM CG31606 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5756913	3L_5756913_SNP [dm3] 3L_5763813_SNP [dm6]	A	G	2.721e^-4	0.894	UPSTREAM snoRNA:Psi18S-1397 & 1 other DOWNSTREAM snoRNA:Psi28S-1837c & 2 others INTRON CG10576	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	24487552	3L_24487552_SNP [dm3] 3L_24494452_SNP [dm6]	T	G	2.738e^-4	0.897	INTERGENIC
2R	13901069	2R_13901069_SNP [dm3] 2R_18013564_SNP [dm6]	T	C	2.742e^-4	0.897	INTERGENIC
3R	2983929	3R_2983929_SNP [dm3] 3R_7158207_SNP [dm6]	G	A	2.744e^-4	0.897	INTERGENIC
2L	1566753	2L_1566753_SNP [dm3] 2L_1566753_SNP [dm6]	G	T	2.760e^-4	0.9	INTRON haf
X	11003237	X_11003237_SNP [dm3] X_11109204_SNP [dm6]	T	C	2.784e^-4	0.906	UPSTREAM Hsp60 INTRON Hsp60	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2L	20959578	2L_20959578_SNP [dm3] 2L_20959578_SNP [dm6]	G	A	2.787e^-4	0.906	INTERGENIC
3R	18819984	3R_18819984_SNP [dm3] 3R_22994262_SNP [dm6]	T	G	2.794e^-4	0.906	UPSTREAM Nha2 INTRON Nha2
3R	17302963	3R_17302963_SNP [dm3] 3R_21477241_SNP [dm6]	A	G	2.796e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8580317	3L_8580317_SNP [dm3] 3L_8587217_SNP [dm6]	T	A	2.801e^-4	0.906	INTRON CG43078	TF binding site mE1_TFBS_chinmo
X	4068500	X_4068500_SNP [dm3] X_4174467_SNP [dm6]	C	T	2.809e^-4	0.906	INTRON Fas2
3R	6884313	3R_6884313_SNP [dm3] 3R_11058591_SNP [dm6]	A	C	2.812e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16738745	3R_16738745_SNP [dm3] 3R_20913023_SNP [dm6]	T	G	2.818e^-4	0.906	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	4129180	3R_4129180_SNP [dm3] 3R_8303458_SNP [dm6]	A	G	2.824e^-4	0.906	SYNONYMOUS_CODING nac DOWNSTREAM mRpL1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	21725062	3R_21725062_SNP [dm3] 3R_25899340_SNP [dm6]	T	C	2.828e^-4	0.906	UPSTREAM CG31091 INTRON MCO3
3L	16738382	3L_16738382_SNP [dm3] 3L_16745282_SNP [dm6]	G	C	2.829e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	25217150	3R_25217150_SNP [dm3] 3R_29391428_SNP [dm6]	A	G	2.840e^-4	0.907	INTRON Ptp99A
2L	10102500	2L_10102500_SNP [dm3] 2L_10102500_SNP [dm6]	T	C	2.852e^-4	0.907	INTRON CG44153 & 1 other
3R	10192209	3R_10192209_SNP [dm3] 3R_14366487_SNP [dm6]	T	C	2.853e^-4	0.907	INTRON NK7.1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
2R	15290711	2R_15290711_SNP [dm3] 2R_19403206_SNP [dm6]	G	A	2.864e^-4	0.907	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	2090408	X_2090408_SNP [dm3] X_2196375_SNP [dm6]	T	A	2.864e^-4	0.907	INTRON Mct1
2R	8534456	2R_8534456_SNP [dm3] 2R_12646951_SNP [dm6]	G	A	2.864e^-4	0.907	INTRON CG8785
2R	7732574	2R_7732574_SNP [dm3] 2R_11845069_SNP [dm6]	A	G	2.873e^-4	0.907	UTR_3_PRIME CG43190 UPSTREAM S2P & 1 other EXON CR44304	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10738480	3R_10738480_SNP [dm3] 3R_14912758_SNP [dm6]	A	G	2.884e^-4	0.907	INTERGENIC
2L	13883576	2L_13883576_SNP [dm3] 2L_13883576_SNP [dm6]	T	C	2.892e^-4	0.907	INTRON CenG1A
2L	7975693	2L_7975693_SNP [dm3] 2L_7975693_SNP [dm6]	G	A	2.894e^-4	0.907	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10092620	2L_10092620_SNP [dm3] 2L_10092620_SNP [dm6]	T	A	2.898e^-4	0.907	UPSTREAM CG13133 INTRON CG44153
3R	10192210	3R_10192210_SNP [dm3] 3R_14366488_SNP [dm6]	G	A	2.901e^-4	0.907	INTRON NK7.1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
2L	4313124	2L_4313124_SNP [dm3] 2L_4313124_SNP [dm6]	T	C	2.905e^-4	0.907	INTRON tutl
X	13582763	X_13582763_SNP [dm3] X_13688730_SNP [dm6]	C	T	2.906e^-4	0.907	INTRON CG9940	TF binding site BDTNP1_TFBS_twi
3R	8053879	3R_8053879_SNP [dm3] 3R_12228157_SNP [dm6]	T	C	2.917e^-4	0.907	INTERGENIC
3L	15736281	3L_15736281_SNP [dm3] 3L_15743181_SNP [dm6]	T	C	2.923e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10506472	3R_10506472_SNP [dm3] 3R_14680750_SNP [dm6]	C	G	2.926e^-4	0.907	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	18831994	X_18831994_DEL [dm3] X_18937961_DEL [dm6]	TTTTCGGCGT	T	2.928e^-4	0.907	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	25946295	3R_25946295_SNP [dm3] 3R_30120573_SNP [dm6]	G	T	2.934e^-4	0.907	NON_SYNONYMOUS_CODING sima UTR_3_PRIME sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21396462	3L_21396462_DEL [dm3] 3L_21403362_DEL [dm6]	GA	G	2.938e^-4	0.907	INTRON rgn
3R	9874573	3R_9874573_SNP [dm3] 3R_14048851_SNP [dm6]	G	A	2.940e^-4	0.907	INTERGENIC
3L	3241902	3L_3241902_SNP [dm3] 3L_3241902_SNP [dm6]	A	T	2.940e^-4	0.907	INTERGENIC
3L	5205666	3L_5205666_SNP [dm3] 3L_5212566_SNP [dm6]	T	C	2.947e^-4	0.907	INTRON shep
2L	15153191	2L_15153191_SNP [dm3] 2L_15153191_SNP [dm6]	C	T	2.950e^-4	0.907	INTERGENIC
X	6926528	X_6926528_SNP [dm3] X_7032495_SNP [dm6]	A	T	2.961e^-4	0.908	INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15214946	2L_15214946_SNP [dm3] 2L_15214946_SNP [dm6]	T	G	2.969e^-4	0.908	UPSTREAM CG43230 INTERGENIC
2L	4124723	2L_4124723_SNP [dm3] 2L_4124723_SNP [dm6]	A	G	2.976e^-4	0.908	DOWNSTREAM Sr-CI INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13841965	2L_13841965_SNP [dm3] 2L_13841965_SNP [dm6]	T	G	2.976e^-4	0.908	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3L	19963175	3L_19963175_SNP [dm3] 3L_19970075_SNP [dm6]	C	G	2.978e^-4	0.908	INTRON Ac76E
3R	26527980	3R_26527980_SNP [dm3] 3R_30702258_SNP [dm6]	A	G	2.989e^-4	0.908	INTERGENIC
2L	10268535	2L_10268535_SNP [dm3] 2L_10268535_SNP [dm6]	C	T	2.999e^-4	0.908	UTR_3_PRIME CG4953 UPSTREAM CG4957
3R	23141571	3R_23141571_SNP [dm3] 3R_27315849_SNP [dm6]	C	T	3.002e^-4	0.908	NON_SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	7062587	X_7062587_SNP [dm3] X_7168554_SNP [dm6]	G	T	3.007e^-4	0.908	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9389756	3L_9389756_SNP [dm3] 3L_9396656_SNP [dm6]	G	A	3.011e^-4	0.908	INTRON CG4080
3R	15719749	3R_15719749_SNP [dm3] 3R_19894027_SNP [dm6]	G	A	3.014e^-4	0.908	INTRON CG4733	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3491023	2R_3491023_SNP [dm3] 2R_7603518_SNP [dm6]	G	C	3.018e^-4	0.908	SPLICE_SITE_REGION CG1358 SYNONYMOUS_CODING CG1358
2L	10359261	2L_10359261_SNP [dm3] 2L_10359261_SNP [dm6]	T	C	3.023e^-4	0.908	SYNONYMOUS_CODING Cand1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12127227	2R_12127227_SNP [dm3] 2R_16239722_SNP [dm6]	T	C	3.030e^-4	0.908	SYNONYMOUS_CODING krimp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22535855	3L_22535855_SNP [dm3] 3L_22542755_SNP [dm6]	A	G	3.030e^-4	0.908	INTERGENIC
2R	8534449	2R_8534449_SNP [dm3] 2R_12646944_SNP [dm6]	T	A	3.032e^-4	0.908	INTRON CG8785
X	6926555	X_6926555_DEL [dm3] X_7032522_DEL [dm6]	TT	T	3.037e^-4	0.908	INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21728956	3R_21728956_SNP [dm3] 3R_25903234_SNP [dm6]	G	A	3.055e^-4	0.911	SYNONYMOUS_CODING CG31089 INTRON CR43259
3R	23373195	3R_23373195_SNP [dm3] 3R_27547473_SNP [dm6]	C	G	3.062e^-4	0.911	DOWNSTREAM Klp98A & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4702340	2L_4702340_SNP [dm3] 2L_4702340_SNP [dm6]	A	C	3.063e^-4	0.911	UPSTREAM Taf12L INTRON CG34351
X	5204130	X_5204130_INS [dm3] X_5310097_INS [dm6]	A	ATGTGACA	3.063e^-4	0.911	DOWNSTREAM TrxT INTRON snf
3L	8587002	3L_8587002_SNP [dm3] 3L_8593902_SNP [dm6]	G	A	3.078e^-4	0.913	SYNONYMOUS_CODING CG43078 UTR_3_PRIME CG43078
3R	15200776	3R_15200776_SNP [dm3] 3R_19375054_SNP [dm6]	C	T	3.081e^-4	0.913	UTR_3_PRIME CG31404 UPSTREAM CG3581 INTRON Ino80
2L	7999226	2L_7999226_SNP [dm3] 2L_7999226_SNP [dm6]	T	A	3.088e^-4	0.913	DOWNSTREAM Wwox INTRON Sirup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	16563028	2L_16563028_SNP [dm3] 2L_16563028_SNP [dm6]	C	T	3.098e^-4	0.914	INTRON CG42389
2L	13432344	2L_13432344_SNP [dm3] 2L_13432344_SNP [dm6]	G	A	3.099e^-4	0.914	INTRON CG42784
X	7425373	X_7425373_SNP [dm3] X_7531340_SNP [dm6]	A	T	3.114e^-4	0.917	INTRON CG32719
3L	10270639	3L_10270639_SNP [dm3] 3L_10277539_SNP [dm6]	C	T	3.126e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	22609193	3L_22609193_SNP [dm3] 3L_22616093_SNP [dm6]	A	G	3.128e^-4	0.918	INTRON CG14459
X	3985924	X_3985924_SNP [dm3] X_4091891_SNP [dm6]	T	A	3.143e^-4	0.92	UTR_3_PRIME CG43689
2L	16609202	2L_16609202_SNP [dm3] 2L_16609202_SNP [dm6]	G	A	3.148e^-4	0.92	SYNONYMOUS_CODING CG4631 INTRON CG42389
2L	7999738	2L_7999738_SNP [dm3] 2L_7999738_SNP [dm6]	C	A	3.156e^-4	0.92	UTR_3_PRIME Wwox DOWNSTREAM Sirup INTRON Wwox	TF binding site BDTNP1_TFBS_twi
2L	7999739	2L_7999739_SNP [dm3] 2L_7999739_SNP [dm6]	T	A	3.156e^-4	0.92	UTR_3_PRIME Wwox DOWNSTREAM Sirup INTRON Wwox	TF binding site BDTNP1_TFBS_twi
X	2600916	X_2600916_SNP [dm3] X_2706883_SNP [dm6]	T	A	3.158e^-4	0.92	DOWNSTREAM eIF2B-beta INTRON CG2680	TF binding site mE1_TFBS_cad
2L	7997851	2L_7997851_SNP [dm3] 2L_7997851_SNP [dm6]	G	T	3.166e^-4	0.921	UPSTREAM CG7227 INTRON CG7227	TF binding site BDTNP1_TFBS_dl
3R	14383120	3R_14383120_SNP [dm3] 3R_18557398_SNP [dm6]	T	C	3.178e^-4	0.923	INTERGENIC
2L	13851619	2L_13851619_SNP [dm3] 2L_13851619_SNP [dm6]	C	G	3.189e^-4	0.923	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6727975	2R_6727975_SNP [dm3] 2R_10840470_SNP [dm6]	T	C	3.190e^-4	0.923	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16281395	2R_16281395_SNP [dm3] 2R_20393890_SNP [dm6]	T	C	3.206e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5778647	2R_5778647_SNP [dm3] 2R_9891142_SNP [dm6]	A	G	3.209e^-4	0.925	UPSTREAM CG30007 DOWNSTREAM CG30008 INTRON CG1513	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
X	20834370	X_20834370_SNP [dm3] X_20963343_SNP [dm6]	G	A	3.223e^-4	0.925	SYNONYMOUS_CODING Ser6
3R	9147034	3R_9147034_SNP [dm3] 3R_13321312_SNP [dm6]	C	T	3.227e^-4	0.925	INTERGENIC
X	12060230	X_12060230_SNP [dm3] X_12166197_SNP [dm6]	G	A	3.229e^-4	0.925	INTRON Ten-a
2R	18240196	2R_18240196_SNP [dm3] 2R_22352691_SNP [dm6]	C	T	3.231e^-4	0.925	INTRON Liprin-gamma
2L	18537702	2L_18537702_SNP [dm3] 2L_18537702_SNP [dm6]	A	C	3.240e^-4	0.925	INTRON Pde11	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13910822	2L_13910822_SNP [dm3] 2L_13910822_SNP [dm6]	C	G	3.241e^-4	0.925	NON_SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad
2R	11943681	2R_11943681_SNP [dm3] 2R_16056176_SNP [dm6]	T	C	3.244e^-4	0.925	INTRON CG8405
3R	6553368	3R_6553368_SNP [dm3] 3R_10727646_SNP [dm6]	T	G	3.247e^-4	0.925	INTERGENIC
X	9411868	X_9411868_SNP [dm3] X_9517835_SNP [dm6]	C	T	3.258e^-4	0.925	INTRON CG32700
X	21062130	X_21062130_SNP [dm3] X_21191103_SNP [dm6]	T	C	3.275e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10514291	3L_10514291_SNP [dm3] 3L_10521191_SNP [dm6]	A	G	3.280e^-4	0.925	INTRON A2bp1	TF binding site mE1_TFBS_Trl
2L	7202043	2L_7202043_SNP [dm3] 2L_7202043_SNP [dm6]	T	G	3.287e^-4	0.925	INTRON CG4502
2R	8721902	2R_8721902_SNP [dm3] 2R_12834397_SNP [dm6]	C	T	3.288e^-4	0.925	INTERGENIC
3R	21725021	3R_21725021_SNP [dm3] 3R_25899299_SNP [dm6]	T	A	3.295e^-4	0.925	UPSTREAM CG31091 INTRON MCO3
X	7754888	X_7754888_SNP [dm3] X_7860855_SNP [dm6]	G	A	3.298e^-4	0.925	INTERGENIC
3L	10223768	3L_10223768_SNP [dm3] 3L_10230668_SNP [dm6]	C	T	3.299e^-4	0.925	INTERGENIC
3L	15809001	3L_15809001_SNP [dm3] 3L_15815901_SNP [dm6]	C	T	3.303e^-4	0.925	INTRON fwe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	24879129	3R_24879129_SNP [dm3] 3R_29053407_SNP [dm6]	G	C	3.305e^-4	0.925	SYNONYMOUS_CODING CG11842 UPSTREAM CG11843	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3017469	X_3017469_SNP [dm3] X_3123436_SNP [dm6]	A	G	3.324e^-4	0.925	INTRON kirre
3L	6987640	3L_6987640_SNP [dm3] 3L_6994540_SNP [dm6]	C	T	3.329e^-4	0.925	DOWNSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7917045	2L_7917045_SNP [dm3] 2L_7917045_SNP [dm6]	G	A	3.333e^-4	0.925	INTRON Snoo
3R	4049499	3R_4049499_DEL [dm3] 3R_8223777_DEL [dm6]	AAA	A	3.335e^-4	0.925	INTERGENIC
3R	362463	3R_362463_SNP [dm3] 3R_4536741_SNP [dm6]	G	C	3.346e^-4	0.925	INTRON CG34357
3L	22694330	3L_22694330_SNP [dm3] 3L_22701230_SNP [dm6]	G	A	3.346e^-4	0.925	INTERGENIC
3R	16738746	3R_16738746_SNP [dm3] 3R_20913024_SNP [dm6]	C	A	3.346e^-4	0.925	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7277676	2L_7277676_SNP [dm3] 2L_7277676_SNP [dm6]	A	G	3.347e^-4	0.925	UPSTREAM Wnt4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA
X	17323326	X_17323326_SNP [dm3] X_17429293_SNP [dm6]	G	T	3.351e^-4	0.925	DOWNSTREAM CG5613 INTRON CG12994
2R	9381314	2R_9381314_SNP [dm3] 2R_13493809_SNP [dm6]	A	G	3.351e^-4	0.925	INTRON bbc
X	14711167	X_14711167_SNP [dm3] X_14817134_SNP [dm6]	T	G	3.355e^-4	0.925	INTRON rut
3R	23373120	3R_23373120_SNP [dm3] 3R_27547398_SNP [dm6]	T	A	3.357e^-4	0.925	NON_SYNONYMOUS_CODING Gr98d DOWNSTREAM Klp98A	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13864425	2L_13864425_SNP [dm3] 2L_13864425_SNP [dm6]	C	G	3.358e^-4	0.925	INTRON CenG1A	TF binding site BDTNP1_TFBS_twi
3R	12738072	3R_12738072_SNP [dm3] 3R_16912350_SNP [dm6]	A	G	3.363e^-4	0.925	INTRON iab-8
2L	7997077	2L_7997077_SNP [dm3] 2L_7997077_SNP [dm6]	G	A	3.368e^-4	0.925	DOWNSTREAM CR44996 INTRON CG7227
2R	5869009	2R_5869009_SNP [dm3] 2R_9981504_SNP [dm6]	G	A	3.373e^-4	0.925	DOWNSTREAM eve INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	15478813	3L_15478813_INS [dm3] 3L_15485713_INS [dm6]	A	AGTATGCA	3.385e^-4	0.926	UPSTREAM Ran-like INTERGENIC
3R	1827352	3R_1827352_SNP [dm3] 3R_6001630_SNP [dm6]	A	G	3.393e^-4	0.926	SYNONYMOUS_CODING Rm62 UTR_3_PRIME Rm62	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	4350820	2L_4350820_SNP [dm3] 2L_4350820_SNP [dm6]	A	G	3.396e^-4	0.926	UPSTREAM CR44700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3828318	2L_3828318_DEL [dm3] 2L_3828318_DEL [dm6]	CC	C	3.400e^-4	0.926	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	18531467	2L_18531467_SNP [dm3] 2L_18531467_SNP [dm6]	G	A	3.406e^-4	0.926	SYNONYMOUS_CODING CG10211 DOWNSTREAM Pde11
3R	14728123	3R_14728123_SNP [dm3] 3R_18902401_SNP [dm6]	A	C	3.406e^-4	0.926	UTR_3_PRIME CG34284 UPSTREAM CG14294
3R	21728914	3R_21728914_SNP [dm3] 3R_25903192_SNP [dm6]	C	T	3.421e^-4	0.928	SYNONYMOUS_CODING CG31089 EXON CR43259
3L	22529118	3L_22529118_SNP [dm3] 3L_22536018_SNP [dm6]	G	C	3.428e^-4	0.928	INTERGENIC
X	4764732	X_4764732_SNP [dm3] X_4870699_SNP [dm6]	C	T	3.434e^-4	0.928	INTRON CG42594
2L	13862495	2L_13862495_SNP [dm3] 2L_13862495_SNP [dm6]	T	A	3.435e^-4	0.928	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
2L	12084270	2L_12084270_SNP [dm3] 2L_12084270_SNP [dm6]	A	G	3.461e^-4	0.93	SYNONYMOUS_CODING prd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4940831	X_4940831_SNP [dm3] X_5046798_SNP [dm6]	T	C	3.468e^-4	0.93	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	11273301	3R_11273301_SNP [dm3] 3R_15447579_SNP [dm6]	G	A	3.477e^-4	0.93	SYNONYMOUS_CODING AdamTS-A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1140205	2L_1140205_INS [dm3] 2L_1140205_INS [dm6]	G	GGTG	3.478e^-4	0.93	UTR_3_PRIME CG4577
X	9411831	X_9411831_SNP [dm3] X_9517798_SNP [dm6]	C	T	3.479e^-4	0.93	INTRON CG32700
3L	8263382	3L_8263382_SNP [dm3] 3L_8270282_SNP [dm6]	C	A	3.491e^-4	0.93	INTRON Dscam4
3R	22354005	3R_22354005_SNP [dm3] 3R_26528283_SNP [dm6]	C	T	3.506e^-4	0.93	INTRON plum
X	8210876	X_8210876_SNP [dm3] X_8316843_SNP [dm6]	G	A	3.506e^-4	0.93	INTRON nAChRalpha3
3L	19218884	3L_19218884_SNP [dm3] 3L_19225784_SNP [dm6]	G	A	3.511e^-4	0.93	INTRON fz2	TF binding site mE1_TFBS_inv
3R	16738557	3R_16738557_SNP [dm3] 3R_20912835_SNP [dm6]	C	T	3.517e^-4	0.93	INTRON CG31191 EXON CR44106 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	7430029	X_7430029_SNP [dm3] X_7535996_SNP [dm6]	G	A	3.521e^-4	0.93	SYNONYMOUS_CODING CG32720 INTRON CG32719
3R	10506416	3R_10506416_SNP [dm3] 3R_14680694_SNP [dm6]	C	A	3.522e^-4	0.93	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15199817	3R_15199817_SNP [dm3] 3R_19374095_SNP [dm6]	G	A	3.523e^-4	0.93	SYNONYMOUS_CODING CG3581 DOWNSTREAM CG31404 INTRON Ino80
2L	7999840	2L_7999840_DEL [dm3] 2L_7999840_DEL [dm6]	TT	T	3.526e^-4	0.93	UTR_3_PRIME Wwox DOWNSTREAM Sirup	TF binding site BDTNP1_TFBS_twi
2R	7736695	2R_7736695_SNP [dm3] 2R_11849190_SNP [dm6]	A	G	3.531e^-4	0.93	SYNONYMOUS_CODING Sln	TF binding site mE1_TFBS_chinmo
3R	23309147	3R_23309147_SNP [dm3] 3R_27483425_SNP [dm6]	T	A	3.537e^-4	0.93	DOWNSTREAM Cyp6a18 INTERGENIC
2L	17257058	2L_17257058_SNP [dm3] 2L_17257058_SNP [dm6]	C	T	3.539e^-4	0.93	INTRON beat-IIIc
3R	27146550	3R_27146550_SNP [dm3] 3R_31320828_SNP [dm6]	A	G	3.557e^-4	0.93	INTRON CG34347
2L	7142568	2L_7142568_SNP [dm3] 2L_7142568_SNP [dm6]	A	G	3.560e^-4	0.93	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	14463605	X_14463605_SNP [dm3] X_14569572_SNP [dm6]	A	G	3.561e^-4	0.93	INTERGENIC
2R	5813577	2R_5813577_SNP [dm3] 2R_9926072_SNP [dm6]	T	A	3.564e^-4	0.93	INTRON Mef2
3R	9956431	3R_9956431_DEL [dm3] 3R_14130709_DEL [dm6]	TCTTAAAAAT	T	3.570e^-4	0.93	UTR_3_PRIME CG14356 DOWNSTREAM RpII140	TF binding site mE1_TFBS_cad
3L	16967890	3L_16967890_SNP [dm3] 3L_16974790_SNP [dm6]	C	G	3.582e^-4	0.93	INTRON Exn	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	11547202	3L_11547202_SNP [dm3] 3L_11554102_SNP [dm6]	C	T	3.585e^-4	0.93	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	16754867	2L_16754867_INS [dm3] 2L_16754867_INS [dm6]	A	ATGTA	3.588e^-4	0.93	INTRON yellow-b
3L	12306326	3L_12306326_SNP [dm3] 3L_12313226_SNP [dm6]	C	T	3.590e^-4	0.93	INTERGENIC
3R	18500478	3R_18500478_SNP [dm3] 3R_22674756_SNP [dm6]	A	T	3.611e^-4	0.93	SYNONYMOUS_CODING CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
X	5075752	X_5075752_SNP [dm3] X_5181719_SNP [dm6]	C	T	3.612e^-4	0.93	SYNONYMOUS_CODING CG5062 INTRON rg & 1 other
X	5075764	X_5075764_SNP [dm3] X_5181731_SNP [dm6]	A	G	3.613e^-4	0.93	SYNONYMOUS_CODING CG5062 INTRON rg & 1 other
X	12359791	X_12359791_SNP [dm3] X_12465758_SNP [dm6]	G	A	3.620e^-4	0.93	INTRON CG42258
3R	18822472	3R_18822472_SNP [dm3] 3R_22996750_SNP [dm6]	G	A	3.621e^-4	0.93	INTRON Nha2 EXON CR43454
2L	13846825	2L_13846825_SNP [dm3] 2L_13846825_SNP [dm6]	G	A	3.621e^-4	0.93	SYNONYMOUS_CODING CG7916 INTRON CenG1A
3L	6987896	3L_6987896_SNP [dm3] 3L_6994796_SNP [dm6]	A	T	3.640e^-4	0.93	DOWNSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1
3R	3344790	3R_3344790_SNP [dm3] 3R_7519068_SNP [dm6]	G	C	3.645e^-4	0.93	SYNONYMOUS_CODING Ubc84D DOWNSTREAM alpha-Est7
3R	4995985	3R_4995985_SNP [dm3] 3R_9170263_SNP [dm6]	C	G	3.646e^-4	0.93	INTRON pum
X	8961588	X_8961588_SNP [dm3] X_9067555_SNP [dm6]	C	T	3.657e^-4	0.93	UTR_5_PRIME CG15365
2L	10928412	2L_10928412_SNP [dm3] 2L_10928412_SNP [dm6]	G	A	3.658e^-4	0.93	INTRON dpr2
2L	3200181	2L_3200181_DEL [dm3] 2L_3200181_DEL [dm6]	CCC	C	3.661e^-4	0.93	UPSTREAM CG34393 INTRON CG34393
2L	17760887	2L_17760887_SNP [dm3] 2L_17760887_SNP [dm6]	C	T	3.667e^-4	0.93	INTRON CadN
3R	25218356	3R_25218356_SNP [dm3] 3R_29392634_SNP [dm6]	A	T	3.671e^-4	0.93	INTRON Ptp99A
2L	8231279	2L_8231279_SNP [dm3] 2L_8231279_SNP [dm6]	G	T	3.673e^-4	0.93	UPSTREAM Pvr INTRON Pvr
3R	7283692	3R_7283692_SNP [dm3] 3R_11457970_SNP [dm6]	G	T	3.677e^-4	0.93	UTR_5_PRIME PGRP-LB INTRON CG17230 & 1 other
3R	17555213	3R_17555213_SNP [dm3] 3R_21729491_SNP [dm6]	G	A	3.679e^-4	0.93	DOWNSTREAM CR43096 INTERGENIC
3L	21629670	3L_21629670_SNP [dm3] 3L_21636570_SNP [dm6]	A	G	3.681e^-4	0.93	UPSTREAM CG32444 DOWNSTREAM ORMDL INTERGENIC
3L	15922104	3L_15922104_SNP [dm3] 3L_15929004_SNP [dm6]	T	A	3.688e^-4	0.93	INTRON Pka-C3
3R	25227549	3R_25227549_SNP [dm3] 3R_29401827_SNP [dm6]	G	C	3.689e^-4	0.93	INTRON Ptp99A
X	19518808	X_19518808_SNP [dm3] X_19624775_SNP [dm6]	C	T	3.689e^-4	0.93	UTR_3_PRIME MKP-4 UPSTREAM CG14212	TF binding site mE1_TFBS_cad
3R	21725326	3R_21725326_SNP [dm3] 3R_25899604_SNP [dm6]	A	T	3.701e^-4	0.93	UTR_3_PRIME MCO3 UPSTREAM CG31091
2L	1430801	2L_1430801_SNP [dm3] 2L_1430801_SNP [dm6]	T	C	3.708e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4700764	X_4700764_SNP [dm3] X_4806731_SNP [dm6]	G	C	3.713e^-4	0.93	INTERGENIC
2R	13440274	2R_13440274_SNP [dm3] 2R_17552769_SNP [dm6]	C	T	3.716e^-4	0.93	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9593000	3L_9593000_SNP [dm3] 3L_9599900_SNP [dm6]	G	A	3.716e^-4	0.93	SYNONYMOUS_CODING CG3222 DOWNSTREAM CG3088	TF binding site mE1_TFBS_cad
3L	8698592	3L_8698592_SNP [dm3] 3L_8705492_SNP [dm6]	A	T	3.735e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3898412	3R_3898412_SNP [dm3] 3R_8072690_SNP [dm6]	T	C	3.738e^-4	0.93	INTRON mAChR-B	TF binding site BDTNP1_TFBS_dl
3L	22631538	3L_22631538_SNP [dm3] 3L_22638438_SNP [dm6]	G	A	3.738e^-4	0.93	UPSTREAM CG14459 INTERGENIC
3L	17472771	3L_17472771_SNP [dm3] 3L_17479671_SNP [dm6]	C	G	3.745e^-4	0.93	NON_SYNONYMOUS_CODING qjt UPSTREAM CG13733 DOWNSTREAM CG6333
2L	7481012	2L_7481012_SNP [dm3] 2L_7481012_SNP [dm6]	C	T	3.747e^-4	0.93	SYNONYMOUS_CODING Ziz
3L	10651899	3L_10651899_SNP [dm3] 3L_10658799_SNP [dm6]	G	A	3.754e^-4	0.93	INTRON CG32066	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1388182	3L_1388182_SNP [dm3] 3L_1388182_SNP [dm6]	A	T	3.760e^-4	0.93	DOWNSTREAM ru INTRON Ptp61F
2L	9298259	2L_9298259_SNP [dm3] 2L_9298259_SNP [dm6]	T	C	3.764e^-4	0.93	UTR_3_PRIME Ggamma30A
3L	6987827	3L_6987827_SNP [dm3] 3L_6994727_SNP [dm6]	C	T	3.770e^-4	0.93	DOWNSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14614900	2R_14614900_SNP [dm3] 2R_18727395_SNP [dm6]	C	T	3.772e^-4	0.93	DOWNSTREAM List INTRON Hs3st-A
2L	6746699	2L_6746699_SNP [dm3] 2L_6746699_SNP [dm6]	T	C	3.777e^-4	0.93	DOWNSTREAM CG44271 INTRON CG11221
3L	13858353	3L_13858353_SNP [dm3] 3L_13865253_SNP [dm6]	C	T	3.785e^-4	0.93	INTRON CG8745	TF binding site mE1_TFBS_inv
2L	19252424	2L_19252424_SNP [dm3] 2L_19252424_SNP [dm6]	C	T	3.795e^-4	0.93	INTERGENIC
3L	2090326	3L_2090326_SNP [dm3] 3L_2090326_SNP [dm6]	A	C	3.802e^-4	0.93	UTR_3_PRIME sls DOWNSTREAM sls & 1 other INTRON sls	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	2780170	X_2780170_SNP [dm3] X_2886137_SNP [dm6]	T	G	3.808e^-4	0.93	UPSTREAM CG14419 INTRON kirre
2R	13665884	2R_13665884_SNP [dm3] 2R_17778379_SNP [dm6]	T	C	3.811e^-4	0.93	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10731278	2L_10731278_SNP [dm3] 2L_10731278_SNP [dm6]	A	G	3.811e^-4	0.93	UTR_3_PRIME CG17118 DOWNSTREAM CG6443 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27789219	3R_27789219_SNP [dm3] 3R_31963497_SNP [dm6]	T	G	3.817e^-4	0.93	INTRON heph	TF binding site BDTNP1_TFBS_twi
2L	8000083	2L_8000083_DEL [dm3] 2L_8000083_DEL [dm6]	GAG	G	3.824e^-4	0.93	DOWNSTREAM Sirup INTRON Wwox
2L	8824047	2L_8824047_SNP [dm3] 2L_8824047_SNP [dm6]	G	A	3.829e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8840934	3R_8840934_SNP [dm3] 3R_13015212_SNP [dm6]	A	T	3.832e^-4	0.93	INTRON CtBP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11198020	3L_11198020_SNP [dm3] 3L_11204920_SNP [dm6]	T	G	3.836e^-4	0.93	SYNONYMOUS_CODING Plod	TF binding site BDTNP1_TFBS_dl
X	14463275	X_14463275_SNP [dm3] X_14569242_SNP [dm6]	G	A	3.837e^-4	0.93	INTERGENIC
2L	9932352	2L_9932352_SNP [dm3] 2L_9932352_SNP [dm6]	C	T	3.837e^-4	0.93	UTR_3_PRIME Cpr30F
2L	1167185	2L_1167185_DEL [dm3] 2L_1167185_DEL [dm6]	AA	A	3.859e^-4	0.93	UTR_3_PRIME CG14341 & 1 other DOWNSTREAM IntS14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18183757	2R_18183757_SNP [dm3] 2R_22296252_SNP [dm6]	C	T	3.864e^-4	0.93	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_cad
X	6926706	X_6926706_DEL [dm3] X_7032673_DEL [dm6]	AA	A	3.878e^-4	0.93	INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	11563465	X_11563465_SNP [dm3] X_11669432_SNP [dm6]	G	C	3.881e^-4	0.93	INTRON Ptp10D
2L	18514984	2L_18514984_SNP [dm3] 2L_18514984_SNP [dm6]	C	G	3.891e^-4	0.93	INTERGENIC
3R	6549660	3R_6549660_SNP [dm3] 3R_10723938_SNP [dm6]	G	A	3.892e^-4	0.93	INTERGENIC
2L	18531489	2L_18531489_SNP [dm3] 2L_18531489_SNP [dm6]	C	T	3.897e^-4	0.93	NON_SYNONYMOUS_CODING CG10211 DOWNSTREAM Pde11
3R	16825965	3R_16825965_SNP [dm3] 3R_21000243_SNP [dm6]	T	G	3.900e^-4	0.93	INTRON Calx
3L	6989270	3L_6989270_SNP [dm3] 3L_6996170_SNP [dm6]	A	G	3.903e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_zfh1
3L	2404885	3L_2404885_SNP [dm3] 3L_2404885_SNP [dm6]	C	A	3.908e^-4	0.93	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_sens
3L	22579500	3L_22579500_SNP [dm3] 3L_22586400_SNP [dm6]	T	C	3.913e^-4	0.93	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8158299	3R_8158299_SNP [dm3] 3R_12332577_SNP [dm6]	G	A	3.916e^-4	0.93	INTERGENIC
2R	16281397	2R_16281397_INS [dm3] 2R_20393892_INS [dm6]	T	TGAAGCTAGAA...	3.919e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17717617	3R_17717617_SNP [dm3] 3R_21891895_SNP [dm6]	G	A	3.931e^-4	0.93	INTRON CG6678	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8920298	2L_8920298_SNP [dm3] 2L_8920298_SNP [dm6]	G	A	3.936e^-4	0.93	INTRON CG34398	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	8674363	X_8674363_SNP [dm3] X_8780330_SNP [dm6]	G	A	3.940e^-4	0.93	INTRON Lim1
2L	13266012	2L_13266012_SNP [dm3] 2L_13266012_SNP [dm6]	C	A	3.943e^-4	0.93	UPSTREAM CG44085 & 1 other INTRON CG44085
2L	17804869	2L_17804869_SNP [dm3] 2L_17804869_SNP [dm6]	C	T	3.944e^-4	0.93	INTRON CadN2
X	3160284	X_3160284_DEL [dm3] X_3266251_DEL [dm6]	AG	A	3.950e^-4	0.93	INTRON dnc
2R	11829953	2R_11829953_SNP [dm3] 2R_15942448_SNP [dm6]	T	C	3.953e^-4	0.93	UPSTREAM CG8299 & 1 other INTERGENIC
2L	14208145	2L_14208145_SNP [dm3] 2L_14208145_SNP [dm6]	C	A	3.959e^-4	0.93	INTRON Dyrk2
2L	7205201	2L_7205201_SNP [dm3] 2L_7205201_SNP [dm6]	A	G	3.959e^-4	0.93	UTR_3_PRIME CG13784 UPSTREAM CG4502 DOWNSTREAM CG13784
3L	18590901	3L_18590901_SNP [dm3] 3L_18597801_SNP [dm6]	C	A	3.959e^-4	0.93	UPSTREAM CR45390 INTERGENIC
2L	10424730	2L_10424730_SNP [dm3] 2L_10424730_SNP [dm6]	G	T	3.960e^-4	0.93	SPLICE_SITE_REGION CG5168 DOWNSTREAM SmB INTRON CG5168
3R	21729406	3R_21729406_SNP [dm3] 3R_25903684_SNP [dm6]	A	T	3.963e^-4	0.93	INTRON CR43259 & 1 other
3L	9365816	3L_9365816_SNP [dm3] 3L_9372716_SNP [dm6]	G	A	3.970e^-4	0.93	UPSTREAM Hsp67Bb & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	15254436	2L_15254436_SNP [dm3] 2L_15254436_SNP [dm6]	A	C	3.984e^-4	0.93	UTR_3_PRIME dao DOWNSTREAM dao & 1 other
2R	4273902	2R_4273902_SNP [dm3] 2R_8386397_SNP [dm6]	T	C	3.996e^-4	0.93	UPSTREAM pdm3 INTRON pdm3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2612153	X_2612153_SNP [dm3] X_2718120_SNP [dm6]	G	A	3.997e^-4	0.93	SYNONYMOUS_CODING CG2701 DOWNSTREAM CG2694	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5830457	2R_5830457_SNP [dm3] 2R_9942952_SNP [dm6]	C	T	4.022e^-4	0.93	UTR_5_PRIME Mef2 INTRON Mef2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	13931399	3L_13931399_SNP [dm3] 3L_13938299_SNP [dm6]	T	A	4.024e^-4	0.93	UPSTREAM CG32137 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	8000132	2L_8000132_SNP [dm3] 2L_8000132_SNP [dm6]	A	G	4.025e^-4	0.93	SYNONYMOUS_CODING Wwox DOWNSTREAM Sirup	TF binding site mE1_TFBS_sens
3R	25972075	3R_25972075_SNP [dm3] 3R_30146353_SNP [dm6]	T	C	4.026e^-4	0.93	INTRON AdoR
X	4541308	X_4541308_SNP [dm3] X_4647275_SNP [dm6]	C	T	4.042e^-4	0.93	UPSTREAM mRpL30 INTRON HLH4C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4700760	X_4700760_DEL [dm3] X_4806727_DEL [dm6]	TGT	T	4.062e^-4	0.93	INTERGENIC
2L	18179112	2L_18179112_SNP [dm3] 2L_18179112_SNP [dm6]	G	C	4.064e^-4	0.93	INTRON CG42750
2R	6743124	2R_6743124_SNP [dm3] 2R_10855619_SNP [dm6]	T	A	4.074e^-4	0.93	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3R	13466711	3R_13466711_SNP [dm3] 3R_17640989_SNP [dm6]	T	G	4.080e^-4	0.93	INTRON CG43175
3R	6549661	3R_6549661_SNP [dm3] 3R_10723939_SNP [dm6]	A	T	4.082e^-4	0.93	INTERGENIC
3L	20974034	3L_20974034_SNP [dm3] 3L_20980934_SNP [dm6]	T	C	4.094e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13958988	2R_13958988_SNP [dm3] 2R_18071483_SNP [dm6]	T	C	4.095e^-4	0.93	INTRON CG34386
2L	5776707	2L_5776707_SNP [dm3] 2L_5776707_SNP [dm6]	G	A	4.096e^-4	0.93	INTRON CG9171
3L	2405641	3L_2405641_SNP [dm3] 3L_2405641_SNP [dm6]	T	A	4.096e^-4	0.93	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7995808	2L_7995808_SNP [dm3] 2L_7995808_SNP [dm6]	G	A	4.112e^-4	0.93	SYNONYMOUS_CODING CG7227 EXON CR44996	TF binding site mE1_TFBS_cad
3R	23661637	3R_23661637_SNP [dm3] 3R_27835915_SNP [dm6]	G	T	4.114e^-4	0.93	INTRON CG34353
2L	1142628	2L_1142628_SNP [dm3] 2L_1142628_SNP [dm6]	A	C	4.120e^-4	0.93	UPSTREAM CR45717 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	10506372	3R_10506372_SNP [dm3] 3R_14680650_SNP [dm6]	A	G	4.126e^-4	0.93	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18184651	2R_18184651_INS [dm3] 2R_22297146_INS [dm6]	T	TAGTCGAAAAAAATTTAAAT...	4.137e^-4	0.93	DOWNSTREAM CG5819 INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	9021059	3R_9021059_SNP [dm3] 3R_13195337_SNP [dm6]	T	C	4.158e^-4	0.93	INTERGENIC
3R	3344745	3R_3344745_SNP [dm3] 3R_7519023_SNP [dm6]	G	A	4.166e^-4	0.93	SYNONYMOUS_CODING Ubc84D DOWNSTREAM alpha-Est7
2L	9591090	2L_9591090_SNP [dm3] 2L_9591090_SNP [dm6]	T	A	4.178e^-4	0.93	NON_SYNONYMOUS_CODING CG3841	regulatory region REDfly_CRMs
3R	15409321	3R_15409321_SNP [dm3] 3R_19583599_SNP [dm6]	C	G	4.181e^-4	0.93	INTRON Dys
3L	1628250	3L_1628250_SNP [dm3] 3L_1628250_SNP [dm6]	G	T	4.186e^-4	0.93	UTR_5_PRIME CG13928 INTRON GC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	21593218	3R_21593218_SNP [dm3] 3R_25767496_SNP [dm6]	A	G	4.205e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	16081350	X_16081350_SNP [dm3] X_16187317_SNP [dm6]	A	G	4.206e^-4	0.93	INTERGENIC
X	16533579	X_16533579_SNP [dm3] X_16639546_SNP [dm6]	G	T	4.208e^-4	0.93	DOWNSTREAM SmG & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	4764709	X_4764709_SNP [dm3] X_4870676_SNP [dm6]	C	T	4.219e^-4	0.93	INTRON CG42594
3L	3262885	3L_3262885_SNP [dm3] 3L_3262885_SNP [dm6]	A	G	4.229e^-4	0.93	INTRON ckd
2L	20762874	2L_20762874_SNP [dm3] 2L_20762874_SNP [dm6]	C	A	4.231e^-4	0.93	DOWNSTREAM dia INTRON dia	TF binding site mE1_TFBS_HSA
3R	19047730	3R_19047730_SNP [dm3] 3R_23222008_SNP [dm6]	C	G	4.242e^-4	0.93	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4985820	2L_4985820_DEL [dm3] 2L_4985820_DEL [dm6]	TGATG	T	4.243e^-4	0.93	INTRON CG34126	TF binding site mE1_TFBS_cad
3R	14168834	3R_14168834_SNP [dm3] 3R_18343112_SNP [dm6]	G	A	4.244e^-4	0.93	INTRON CG15803
3L	14144643	3L_14144643_SNP [dm3] 3L_14151543_SNP [dm6]	G	A	4.245e^-4	0.93	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	7481099	2L_7481099_SNP [dm3] 2L_7481099_SNP [dm6]	G	T	4.247e^-4	0.93	SYNONYMOUS_CODING Ziz
3L	8404570	3L_8404570_SNP [dm3] 3L_8411470_SNP [dm6]	C	T	4.256e^-4	0.93	SYNONYMOUS_CODING Oseg1 UPSTREAM Exo70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	6828201	2L_6828201_SNP [dm3] 2L_6828201_SNP [dm6]	C	A	4.261e^-4	0.93	INTRON sens-2	TF binding site mE1_TFBS_cad
2L	1166414	2L_1166414_SNP [dm3] 2L_1166414_SNP [dm6]	T	G	4.261e^-4	0.93	UTR_3_PRIME IntS14 UPSTREAM CG14341 DOWNSTREAM Plap	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	3290833	3R_3290833_SNP [dm3] 3R_7465111_SNP [dm6]	A	G	4.262e^-4	0.93	INTERGENIC
2R	6562789	2R_6562789_SNP [dm3] 2R_10675284_SNP [dm6]	T	C	4.277e^-4	0.93	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18368746	2R_18368746_SNP [dm3] 2R_22481241_SNP [dm6]	C	T	4.277e^-4	0.93	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27137550	3R_27137550_SNP [dm3] 3R_31311828_SNP [dm6]	C	T	4.278e^-4	0.93	UTR_5_PRIME CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	17919881	X_17919881_SNP [dm3] X_18025848_SNP [dm6]	A	T	4.301e^-4	0.93	SYNONYMOUS_CODING CG6867 INTRON Sh	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21725881	3R_21725881_SNP [dm3] 3R_25900159_SNP [dm6]	A	C	4.302e^-4	0.93	UTR_5_PRIME CG31091 UPSTREAM CG31091 DOWNSTREAM MCO3
2R	8534455	2R_8534455_SNP [dm3] 2R_12646950_SNP [dm6]	A	C	4.303e^-4	0.93	INTRON CG8785
3L	2683844	3L_2683844_SNP [dm3] 3L_2683844_SNP [dm6]	C	G	4.311e^-4	0.93	INTRON Fife
2R	18963789	2R_18963789_SNP [dm3] 2R_23076266_SNP [dm6]	C	A	4.312e^-4	0.93	SYNONYMOUS_CODING CG3085 DOWNSTREAM Art7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10770648	X_10770648_SNP [dm3] X_10876615_SNP [dm6]	G	A	4.325e^-4	0.93	INTRON CG1637
3L	8243798	3L_8243798_SNP [dm3] 3L_8250698_SNP [dm6]	G	A	4.328e^-4	0.93	INTRON Dscam4	TF binding site mE1_TFBS_chinmo
3L	15910933	3L_15910933_SNP [dm3] 3L_15917833_SNP [dm6]	A	G	4.342e^-4	0.93	INTRON sff
2L	10049930	2L_10049930_SNP [dm3] 2L_10049930_SNP [dm6]	A	G	4.345e^-4	0.93	SYNONYMOUS_CODING CG33301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9312444	2L_9312444_DEL [dm3] 2L_9312444_DEL [dm6]	TT	T	4.353e^-4	0.93	INTERGENIC
2L	17828951	2L_17828951_SNP [dm3] 2L_17828951_SNP [dm6]	T	C	4.355e^-4	0.93	INTRON CadN2
3L	10714303	3L_10714303_SNP [dm3] 3L_10721203_SNP [dm6]	T	C	4.359e^-4	0.93	INTERGENIC
2L	1741002	2L_1741002_SNP [dm3] 2L_1741002_SNP [dm6]	G	T	4.366e^-4	0.93	INTRON CG17646
2L	15209174	2L_15209174_SNP [dm3] 2L_15209174_SNP [dm6]	A	C	4.374e^-4	0.93	DOWNSTREAM CR44196 INTERGENIC
X	9411885	X_9411885_SNP [dm3] X_9517852_SNP [dm6]	A	G	4.374e^-4	0.93	INTRON CG32700
2L	3200047	2L_3200047_SNP [dm3] 2L_3200047_SNP [dm6]	G	A	4.380e^-4	0.93	UPSTREAM CG34393 INTRON CG34393
3R	13212743	3R_13212743_SNP [dm3] 3R_17387021_SNP [dm6]	C	G	4.382e^-4	0.93	NON_SYNONYMOUS_CODING lute INTRON Brf	TF binding site mE1_TFBS_chinmo
2L	12670169	2L_12670169_SNP [dm3] 2L_12670169_SNP [dm6]	A	C	4.383e^-4	0.93	UPSTREAM CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7172811	2R_7172811_SNP [dm3] 2R_11285306_SNP [dm6]	A	T	4.385e^-4	0.93	UTR_3_PRIME fbl6 DOWNSTREAM CG13220
2L	15254437	2L_15254437_DEL [dm3] 2L_15254437_DEL [dm6]	AAC	A	4.389e^-4	0.93	UTR_3_PRIME dao DOWNSTREAM dao & 1 other
3L	9720812	3L_9720812_SNP [dm3] 3L_9727712_SNP [dm6]	A	G	4.390e^-4	0.93	INTRON Naa60	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4923599	X_4923599_SNP [dm3] X_5029566_SNP [dm6]	G	C	4.394e^-4	0.93	INTRON CR44833
X	14711212	X_14711212_SNP [dm3] X_14817179_SNP [dm6]	G	T	4.396e^-4	0.93	INTRON rut
3R	13212180	3R_13212180_SNP [dm3] 3R_17386458_SNP [dm6]	G	T	4.400e^-4	0.93	INTRON Brf & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2R	12562253	2R_12562253_SNP [dm3] 2R_16674748_SNP [dm6]	C	T	4.409e^-4	0.93	NON_SYNONYMOUS_CODING CG30463
X	12945085	X_12945085_SNP [dm3] X_13051052_SNP [dm6]	T	C	4.410e^-4	0.93	INTRON rad
2L	6422032	2L_6422032_SNP [dm3] 2L_6422032_SNP [dm6]	A	G	4.412e^-4	0.93	INTRON Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6926683	X_6926683_SNP [dm3] X_7032650_SNP [dm6]	A	G	4.413e^-4	0.93	INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16375857	2R_16375857_SNP [dm3] 2R_20488352_SNP [dm6]	T	G	4.420e^-4	0.93	INTERGENIC
X	11003220	X_11003220_SNP [dm3] X_11109187_SNP [dm6]	T	G	4.421e^-4	0.93	UPSTREAM Hsp60 INTRON Hsp60	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
X	16533578	X_16533578_SNP [dm3] X_16639545_SNP [dm6]	G	A	4.421e^-4	0.93	DOWNSTREAM SmG & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	15390763	3R_15390763_SNP [dm3] 3R_19565041_SNP [dm6]	G	C	4.423e^-4	0.93	INTRON Dys
3R	14243657	3R_14243657_SNP [dm3] 3R_18417935_SNP [dm6]	G	A	4.424e^-4	0.93	DOWNSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl
2L	7249045	2L_7249045_SNP [dm3] 2L_7249045_SNP [dm6]	C	T	4.428e^-4	0.93	UTR_5_PRIME Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	7438477	X_7438477_SNP [dm3] X_7544444_SNP [dm6]	A	G	4.432e^-4	0.93	INTRON CG32719	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17778456	2R_17778456_SNP [dm3] 2R_21890951_SNP [dm6]	T	C	4.435e^-4	0.93	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6749719	2R_6749719_SNP [dm3] 2R_10862214_SNP [dm6]	A	G	4.440e^-4	0.93	UPSTREAM CG30015 INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17338786	2R_17338786_SNP [dm3] 2R_21451281_SNP [dm6]	T	C	4.443e^-4	0.93	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9907242	2L_9907242_SNP [dm3] 2L_9907242_SNP [dm6]	A	G	4.458e^-4	0.93	UTR_5_PRIME CG13124	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20447129	X_20447129_SNP [dm3] X_20576102_SNP [dm6]	C	T	4.462e^-4	0.93	INTERGENIC	transposable element FlyBase
3L	15917326	3L_15917326_SNP [dm3] 3L_15924226_SNP [dm6]	A	G	4.469e^-4	0.93	INTRON sff	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15330420	2L_15330420_SNP [dm3] 2L_15330420_SNP [dm6]	A	T	4.485e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	18247576	X_18247576_SNP [dm3] X_18353543_SNP [dm6]	G	T	4.503e^-4	0.93	INTRON CG6123
3R	15114150	3R_15114150_SNP [dm3] 3R_19288428_SNP [dm6]	T	A	4.509e^-4	0.93	EXON CR43451
2L	18510249	2L_18510249_SNP [dm3] 2L_18510249_SNP [dm6]	C	A	4.510e^-4	0.93	INTRON CG10178
3R	14349747	3R_14349747_SNP [dm3] 3R_18524025_SNP [dm6]	G	T	4.515e^-4	0.93	INTRON fru
3L	22589197	3L_22589197_SNP [dm3] 3L_22596097_SNP [dm6]	G	C	4.525e^-4	0.93	INTRON CG14459
3L	22635591	3L_22635591_SNP [dm3] 3L_22642491_SNP [dm6]	G	A	4.532e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6828237	2L_6828237_SNP [dm3] 2L_6828237_SNP [dm6]	C	T	4.533e^-4	0.93	INTRON sens-2	TF binding site mE1_TFBS_cad
2R	12329788	2R_12329788_SNP [dm3] 2R_16442283_SNP [dm6]	G	C	4.547e^-4	0.93	UPSTREAM CG4409 INTERGENIC
2R	5778464	2R_5778464_SNP [dm3] 2R_9890959_SNP [dm6]	T	C	4.548e^-4	0.93	SYNONYMOUS_CODING CG30008 UPSTREAM CG30007 INTRON CG1513	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_sens
X	7593550	X_7593550_SNP [dm3] X_7699517_SNP [dm6]	A	G	4.551e^-4	0.93	INTRON CHES-1-like
2R	14082966	2R_14082966_SNP [dm3] 2R_18195461_SNP [dm6]	C	T	4.552e^-4	0.93	INTERGENIC
3R	3811152	3R_3811152_SNP [dm3] 3R_7985430_SNP [dm6]	T	C	4.553e^-4	0.93	INTRON CG2781
2L	625978	2L_625978_SNP [dm3] 2L_625978_SNP [dm6]	C	A	4.560e^-4	0.93	NON_SYNONYMOUS_CODING CG2839 DOWNSTREAM lectin-21Ca	TF binding site BDTNP1_TFBS_dl
2L	18515099	2L_18515099_SNP [dm3] 2L_18515099_SNP [dm6]	G	A	4.578e^-4	0.93	INTERGENIC
3L	3279645	3L_3279645_SNP [dm3] 3L_3279645_SNP [dm6]	T	A	4.588e^-4	0.93	UPSTREAM CG12017 INTERGENIC
3R	10738511	3R_10738511_SNP [dm3] 3R_14912789_SNP [dm6]	G	A	4.594e^-4	0.93	INTERGENIC
2L	15217388	2L_15217388_SNP [dm3] 2L_15217388_SNP [dm6]	A	G	4.603e^-4	0.93	INTERGENIC
X	8210976	X_8210976_SNP [dm3] X_8316943_SNP [dm6]	C	T	4.609e^-4	0.93	INTRON nAChRalpha3
2L	13432076	2L_13432076_SNP [dm3] 2L_13432076_SNP [dm6]	G	A	4.610e^-4	0.93	INTRON CG42784
3L	23207075	3L_23207075_SNP [dm3] 3L_23213975_SNP [dm6]	A	G	4.611e^-4	0.93	INTRON nAChRalpha4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22353994	3R_22353994_SNP [dm3] 3R_26528272_SNP [dm6]	C	T	4.619e^-4	0.93	INTRON plum
2L	16504461	2L_16504461_SNP [dm3] 2L_16504461_SNP [dm6]	C	A	4.622e^-4	0.93	INTRON Tpr2
2L	7995910	2L_7995910_SNP [dm3] 2L_7995910_SNP [dm6]	T	C	4.640e^-4	0.93	SYNONYMOUS_CODING CG7227 EXON CR44996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19257945	2L_19257945_SNP [dm3] 2L_19257945_SNP [dm6]	C	T	4.641e^-4	0.93	INTERGENIC
3R	10506465	3R_10506465_SNP [dm3] 3R_14680743_SNP [dm6]	T	G	4.641e^-4	0.93	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8244474	3L_8244474_SNP [dm3] 3L_8251374_SNP [dm6]	T	C	4.649e^-4	0.93	INTRON Dscam4
3L	17106618	3L_17106618_SNP [dm3] 3L_17113518_SNP [dm6]	C	T	4.654e^-4	0.93	INTRON Rbp6
2L	13428966	2L_13428966_SNP [dm3] 2L_13428966_SNP [dm6]	T	C	4.658e^-4	0.93	INTRON CG42784
2L	5088658	2L_5088658_SNP [dm3] 2L_5088658_SNP [dm6]	T	G	4.665e^-4	0.93	INTRON pgant5
2R	10682024	2R_10682024_SNP [dm3] 2R_14794519_SNP [dm6]	G	A	4.675e^-4	0.93	INTRON kn
2R	13230901	2R_13230901_SNP [dm3] 2R_17343396_SNP [dm6]	T	C	4.687e^-4	0.93	INTRON mbl
2L	13716072	2L_13716072_SNP [dm3] 2L_13716072_SNP [dm6]	A	G	4.689e^-4	0.93	INTRON CG31814
3R	27866874	3R_27866874_SNP [dm3] 3R_32041152_SNP [dm6]	G	A	4.695e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15390751	3R_15390751_SNP [dm3] 3R_19565029_SNP [dm6]	T	G	4.703e^-4	0.93	INTRON Dys
2R	13421392	2R_13421392_SNP [dm3] 2R_17533887_SNP [dm6]	A	G	4.703e^-4	0.93	INTRON Patronin
2L	11078259	2L_11078259_SNP [dm3] 2L_11078259_SNP [dm6]	A	G	4.705e^-4	0.93	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3R	21352365	3R_21352365_INS [dm3] 3R_25526643_INS [dm6]	T	TGT	4.708e^-4	0.93	INTRON msi
2L	13493760	2L_13493760_SNP [dm3] 2L_13493760_SNP [dm6]	A	T	4.709e^-4	0.93	INTRON CG42784
X	1346456	X_1346456_SNP [dm3] X_1452423_SNP [dm6]	G	A	4.714e^-4	0.93	UTR_3_PRIME futsch UPSTREAM Gr2a	TF binding site mE1_TFBS_HSA
X	20836542	X_20836542_SNP [dm3] X_20965515_SNP [dm6]	T	G	4.715e^-4	0.93	UPSTREAM CG1304 INTERGENIC
X	3160282	X_3160282_SNP [dm3] X_3266249_SNP [dm6]	G	T	4.715e^-4	0.93	INTRON dnc
3R	13212183	3R_13212183_SNP [dm3] 3R_17386461_SNP [dm6]	T	C	4.720e^-4	0.93	INTRON Brf & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	13862413	2L_13862413_SNP [dm3] 2L_13862413_SNP [dm6]	C	T	4.724e^-4	0.93	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
2L	16476739	2L_16476739_INS [dm3] 2L_16476739_INS [dm6]	A	ACATAT	4.724e^-4	0.93	INTRON dac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13990665	2L_13990665_SNP [dm3] 2L_13990665_SNP [dm6]	G	T	4.726e^-4	0.93	INTRON rk
2L	552198	2L_552198_SNP [dm3] 2L_552198_SNP [dm6]	T	C	4.736e^-4	0.93	UTR_5_PRIME Ets21C
2R	13230922	2R_13230922_SNP [dm3] 2R_17343417_SNP [dm6]	A	C	4.737e^-4	0.93	INTRON mbl
3L	22609178	3L_22609178_SNP [dm3] 3L_22616078_SNP [dm6]	C	G	4.738e^-4	0.93	INTRON CG14459	TF binding site mE1_TFBS_sens
X	14768964	X_14768964_SNP [dm3] X_14874931_SNP [dm6]	T	C	4.739e^-4	0.93	DOWNSTREAM CG45065 & 1 other INTRON Flo2
X	9178091	X_9178091_SNP [dm3] X_9284058_SNP [dm6]	T	C	4.743e^-4	0.93	UPSTREAM c11.1 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	11391909	2L_11391909_SNP [dm3] 2L_11391909_SNP [dm6]	T	G	4.744e^-4	0.93	INTRON CR43681	regulatory region REDfly_CRMs
2R	18660874	2R_18660874_SNP [dm3] 2R_22773369_SNP [dm6]	C	T	4.755e^-4	0.93	INTRON CG42260
3R	23967115	3R_23967115_SNP [dm3] 3R_28141393_SNP [dm6]	C	T	4.760e^-4	0.93	INTERGENIC
X	9411856	X_9411856_SNP [dm3] X_9517823_SNP [dm6]	A	G	4.762e^-4	0.93	INTRON CG32700
3R	3228867	3R_3228867_SNP [dm3] 3R_7403145_SNP [dm6]	T	A	4.767e^-4	0.93	INTERGENIC
3R	5102321	3R_5102321_SNP [dm3] 3R_9276599_SNP [dm6]	C	A	4.769e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3230859	2L_3230859_SNP [dm3] 2L_3230859_SNP [dm6]	T	A	4.774e^-4	0.93	INTERGENIC
3R	7289602	3R_7289602_SNP [dm3] 3R_11463880_SNP [dm6]	C	T	4.783e^-4	0.93	INTRON CG17230
2R	11471549	2R_11471549_SNP [dm3] 2R_15584044_SNP [dm6]	T	C	4.787e^-4	0.93	INTERGENIC
3R	17717619	3R_17717619_SNP [dm3] 3R_21891897_SNP [dm6]	A	C	4.790e^-4	0.93	INTRON CG6678	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7367969	2L_7367969_SNP [dm3] 2L_7367969_SNP [dm6]	A	T	4.792e^-4	0.93	INTRON Wnt10
2L	8301290	2L_8301290_SNP [dm3] 2L_8301290_SNP [dm6]	G	A	4.793e^-4	0.93	UPSTREAM Btk29A DOWNSTREAM wol INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Stat92E mE1_TFBS_Trl
X	11005396	X_11005396_SNP [dm3] X_11111363_SNP [dm6]	G	C	4.795e^-4	0.93	SYNONYMOUS_CODING Hsp60	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19253260	2L_19253260_SNP [dm3] 2L_19253260_SNP [dm6]	C	T	4.805e^-4	0.93	INTERGENIC
2L	11391617	2L_11391617_SNP [dm3] 2L_11391617_SNP [dm6]	C	T	4.815e^-4	0.93	INTRON CR43681	regulatory region REDfly_CRMs
3R	25660226	3R_25660226_SNP [dm3] 3R_29834504_SNP [dm6]	G	A	4.820e^-4	0.93	SYNONYMOUS_CODING Atg16 UPSTREAM Atg16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4700748	X_4700748_SNP [dm3] X_4806715_SNP [dm6]	T	A	4.829e^-4	0.93	INTERGENIC
2L	7975684	2L_7975684_SNP [dm3] 2L_7975684_SNP [dm6]	A	G	4.832e^-4	0.93	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21726247	3R_21726247_SNP [dm3] 3R_25900525_SNP [dm6]	C	A	4.837e^-4	0.93	UTR_5_PRIME CG31091 UPSTREAM CG31091 DOWNSTREAM MCO3
3L	9167569	3L_9167569_SNP [dm3] 3L_9174469_SNP [dm6]	G	C	4.841e^-4	0.93	INTRON Rdl
3L	7778102	3L_7778102_SNP [dm3] 3L_7785002_SNP [dm6]	T	C	4.842e^-4	0.93	INTRON CG32369
2L	16756941	2L_16756941_SNP [dm3] 2L_16756941_SNP [dm6]	G	A	4.844e^-4	0.93	INTRON yellow-b
2L	18509248	2L_18509248_SNP [dm3] 2L_18509248_SNP [dm6]	G	T	4.851e^-4	0.93	UPSTREAM CG10178 INTERGENIC
3R	15395549	3R_15395549_SNP [dm3] 3R_19569827_SNP [dm6]	C	T	4.858e^-4	0.93	INTRON Dys	TF binding site BDTNP1_TFBS_z
X	9660911	X_9660911_SNP [dm3] X_9766878_SNP [dm6]	T	C	4.861e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	18022443	3L_18022443_DEL [dm3] 3L_18029343_DEL [dm6]	AA	A	4.864e^-4	0.93	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5756938	3L_5756938_SNP [dm3] 3L_5763838_SNP [dm6]	A	C	4.865e^-4	0.93	UPSTREAM snoRNA:Psi18S-1397 & 1 other DOWNSTREAM snoRNA:Psi28S-1837c & 2 others INTRON CG10576	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	5756940	3L_5756940_SNP [dm3] 3L_5763840_SNP [dm6]	C	T	4.865e^-4	0.93	UPSTREAM snoRNA:Psi18S-1397 & 1 other DOWNSTREAM snoRNA:Psi28S-1837c & 2 others INTRON CG10576	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	21946538	X_21946538_SNP [dm3] X_22544702_SNP [dm6]	C	T	4.872e^-4	0.93	UPSTREAM CG17599 INTERGENIC
2L	13852169	2L_13852169_SNP [dm3] 2L_13852169_SNP [dm6]	A	G	4.873e^-4	0.93	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	4208255	X_4208255_SNP [dm3] X_4314222_SNP [dm6]	T	A	4.875e^-4	0.93	DOWNSTREAM mei-9 INTRON CR44957
2L	548357	2L_548357_SNP [dm3] 2L_548357_SNP [dm6]	A	G	4.883e^-4	0.93	INTRON Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2524809	2L_2524809_SNP [dm3] 2L_2524809_SNP [dm6]	C	A	4.884e^-4	0.93	INTERGENIC
3L	8806798	3L_8806798_SNP [dm3] 3L_8813698_SNP [dm6]	T	G	4.886e^-4	0.93	INTERGENIC
2L	11691959	2L_11691959_SNP [dm3] 2L_11691959_SNP [dm6]	G	C	4.890e^-4	0.93	INTERGENIC
2R	15466162	2R_15466162_SNP [dm3] 2R_19578657_SNP [dm6]	C	T	4.906e^-4	0.93	INTRON sm
X	14463395	X_14463395_SNP [dm3] X_14569362_SNP [dm6]	T	C	4.918e^-4	0.93	INTERGENIC
3L	23221807	3L_23221807_SNP [dm3] 3L_23228707_SNP [dm6]	T	C	4.919e^-4	0.93	INTRON nAChRalpha4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23212714	3R_23212714_SNP [dm3] 3R_27386992_SNP [dm6]	T	G	4.920e^-4	0.93	INTRON side
X	11586400	X_11586400_SNP [dm3] X_11692367_SNP [dm6]	C	T	4.920e^-4	0.93	UTR_3_PRIME bif INTRON bif
3L	21638991	3L_21638991_SNP [dm3] 3L_21645891_SNP [dm6]	T	G	4.930e^-4	0.93	INTRON CG43980
2L	2576383	2L_2576383_SNP [dm3] 2L_2576383_SNP [dm6]	C	A	4.930e^-4	0.93	NON_SYNONYMOUS_CODING insv	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9754853	2R_9754853_SNP [dm3] 2R_13867348_SNP [dm6]	C	A	4.936e^-4	0.93	INTRON shot
2L	882871	2L_882871_SNP [dm3] 2L_882871_SNP [dm6]	G	A	4.942e^-4	0.93	SYNONYMOUS_CODING CG15824	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16999054	2L_16999054_SNP [dm3] 2L_16999054_SNP [dm6]	T	C	4.945e^-4	0.93	DOWNSTREAM CR45356 & 1 other INTERGENIC
3R	18593961	3R_18593961_SNP [dm3] 3R_22768239_SNP [dm6]	C	T	4.947e^-4	0.93	UTR_3_PRIME CG43091 UPSTREAM CG13841 DOWNSTREAM CG43092 INTRON Usp12-46 & 1 other
X	11563484	X_11563484_SNP [dm3] X_11669451_SNP [dm6]	G	A	4.949e^-4	0.93	INTRON Ptp10D
X	11231529	X_11231529_SNP [dm3] X_11337496_SNP [dm6]	A	G	4.952e^-4	0.93	NON_SYNONYMOUS_CODING Kap3
2L	12477272	2L_12477272_SNP [dm3] 2L_12477272_SNP [dm6]	A	C	4.955e^-4	0.93	INTRON bun
3L	5522335	3L_5522335_SNP [dm3] 3L_5529235_SNP [dm6]	A	C	4.958e^-4	0.93	UTR_5_PRIME Lkr
2L	14690430	2L_14690430_SNP [dm3] 2L_14690430_SNP [dm6]	A	G	4.960e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	13003791	3L_13003791_SNP [dm3] 3L_13010691_SNP [dm6]	G	C	4.965e^-4	0.93	SYNONYMOUS_CODING CG11261
3R	2878738	3R_2878738_SNP [dm3] 3R_7053016_SNP [dm6]	T	C	4.969e^-4	0.93	INTRON Sodh-1
3L	16895984	3L_16895984_SNP [dm3] 3L_16902884_SNP [dm6]	C	A	4.977e^-4	0.93	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
3L	21844890	3L_21844890_SNP [dm3] 3L_21851790_SNP [dm6]	A	C	4.978e^-4	0.93	INTRON mub
3R	13274833	3R_13274833_SNP [dm3] 3R_17449111_SNP [dm6]	A	G	4.982e^-4	0.93	UPSTREAM Eh INTERGENIC	TF binding site mE1_TFBS_bab1
2R	18184656	2R_18184656_SNP [dm3] 2R_22297151_SNP [dm6]	A	T	4.992e^-4	0.93	DOWNSTREAM CG5819 INTERGENIC	TF binding site BDTNP1_TFBS_z
X	7425374	X_7425374_SNP [dm3] X_7531341_SNP [dm6]	T	G	4.996e^-4	0.93	INTRON CG32719
X	16939659	X_16939659_SNP [dm3] X_17045626_SNP [dm6]	T	C	5.000e^-4	0.93	INTRON CG45002
3L	18269942	3L_18269942_SNP [dm3] 3L_18276842_SNP [dm6]	T	A	5.001e^-4	0.93	INTERGENIC
3L	2562314	3L_2562314_SNP [dm3] 3L_2562314_SNP [dm6]	C	T	5.003e^-4	0.93	NON_SYNONYMOUS_CODING msn INTRON msn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8779794	2R_8779794_SNP [dm3] 2R_12892289_SNP [dm6]	A	G	5.009e^-4	0.93	INTRON vg
3L	3773339	3L_3773339_SNP [dm3] 3L_3773339_SNP [dm6]	C	A	5.015e^-4	0.93	INTRON CG32264
2R	12143713	2R_12143713_SNP [dm3] 2R_16256208_SNP [dm6]	A	G	5.017e^-4	0.93	INTRON CngA
X	12780332	X_12780332_SNP [dm3] X_12886299_SNP [dm6]	T	G	5.018e^-4	0.93	INTRON Pde9
3L	1654219	3L_1654219_SNP [dm3] 3L_1654219_SNP [dm6]	A	G	5.018e^-4	0.93	DOWNSTREAM CG7971 & 1 other INTERGENIC
3R	13419861	3R_13419861_SNP [dm3] 3R_17594139_SNP [dm6]	G	A	5.026e^-4	0.93	UPSTREAM CG7587 INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.501e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.07632

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	6.537	0.0381

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1891 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	13574621	X_13574621_SNP [dm3] X_13680588_SNP [dm6]	A	G	1.915e^-7	0.359	UPSTREAM CG12177 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14512611	3L_14512611_SNP [dm3] 3L_14519511_SNP [dm6]	T	G	6.366e^-7	0.364	DOWNSTREAM CG4613 INTRON bbg
3R	24920540	3R_24920540_SNP [dm3] 3R_29094818_SNP [dm6]	G	A	6.632e^-7	0.364	UPSTREAM CR45030 INTRON CG11873
X	21916343	X_21916343_SNP [dm3] X_22514507_SNP [dm6]	G	A	7.759e^-7	0.364	UPSTREAM CG17600 DOWNSTREAM CR43962 EXON CR43962
X	11231972	X_11231972_SNP [dm3] X_11337939_SNP [dm6]	A	C	1.986e^-6	0.687	INTRON Kap3	TF binding site mE1_TFBS_Kr
X	21916350	X_21916350_SNP [dm3] X_22514514_SNP [dm6]	G	C	2.196e^-6	0.687	UPSTREAM CG17600 DOWNSTREAM CR43962 EXON CR43962
X	13574637	X_13574637_SNP [dm3] X_13680604_SNP [dm6]	T	C	3.300e^-6	0.777	UPSTREAM CG12177 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	513871	3R_513871_SNP [dm3] 3R_4688149_SNP [dm6]	T	C	3.793e^-6	0.777	INTRON CG43427	TF binding site mE1_TFBS_sens
2L	16205126	2L_16205126_SNP [dm3] 2L_16205126_SNP [dm6]	T	A	3.921e^-6	0.777	INTERGENIC
3R	498111	3R_498111_SNP [dm3] 3R_4672389_SNP [dm6]	G	C	4.144e^-6	0.777	INTRON CG43427
X	21916313	X_21916313_SNP [dm3] X_22514477_SNP [dm6]	C	G	4.660e^-6	0.795	UPSTREAM CG17600 DOWNSTREAM CR43962 EXON CR43962
3L	22526235	3L_22526235_SNP [dm3] 3L_22533135_SNP [dm6]	C	A	5.725e^-6	0.841	INTERGENIC	transposable element FlyBase
X	1625788	X_1625788_SNP [dm3] X_1731755_SNP [dm6]	A	C	6.777e^-6	0.841	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21916339	X_21916339_SNP [dm3] X_22514503_SNP [dm6]	A	C	7.095e^-6	0.841	UPSTREAM CG17600 DOWNSTREAM CR43962 EXON CR43962
3R	443008	3R_443008_SNP [dm3] 3R_4617286_SNP [dm6]	C	G	7.302e^-6	0.841	INTRON 5-HT2A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13841632	2L_13841632_SNP [dm3] 2L_13841632_SNP [dm6]	A	G	7.846e^-6	0.841	UPSTREAM CG33307 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3L	3523724	3L_3523724_SNP [dm3] 3L_3523724_SNP [dm6]	T	A	7.878e^-6	0.841	UPSTREAM CR45043 INTRON Eip63E
3L	22663284	3L_22663284_SNP [dm3] 3L_22670184_SNP [dm6]	G	T	8.072e^-6	0.841	UPSTREAM mir-958 & 1 other INTRON CG14457	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17550136	2R_17550136_SNP [dm3] 2R_21662631_SNP [dm6]	A	T	8.633e^-6	0.852	UPSTREAM CR44748 & 1 other INTRON pirk
2L	20673623	2L_20673623_SNP [dm3] 2L_20673623_SNP [dm6]	C	T	1.053e^-5	0.895	INTRON CG31678	TF binding site BDTNP1_TFBS_twi
3L	23438911	3L_23438911_SNP [dm3] 3L_23445811_SNP [dm6]	A	T	1.108e^-5	0.895	INTERGENIC
3L	14512616	3L_14512616_SNP [dm3] 3L_14519516_SNP [dm6]	C	T	1.111e^-5	0.895	DOWNSTREAM CG4613 INTRON bbg
3R	434049	3R_434049_SNP [dm3] 3R_4608327_SNP [dm6]	T	A	1.119e^-5	0.895	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	882376	3R_882376_SNP [dm3] 3R_5056654_SNP [dm6]	C	A	1.186e^-5	0.895	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22301238	3R_22301238_SNP [dm3] 3R_26475516_SNP [dm6]	G	A	1.243e^-5	0.895	SYNONYMOUS_CODING plum
3L	22854871	3L_22854871_SNP [dm3] 3L_22861771_SNP [dm6]	C	G	1.437e^-5	0.895	DOWNSTREAM CG13239 INTERGENIC
X	3445050	X_3445050_SNP [dm3] X_3551017_SNP [dm6]	C	G	1.450e^-5	0.895	INTRON CG32791
3L	8403402	3L_8403402_SNP [dm3] 3L_8410302_SNP [dm6]	G	A	1.630e^-5	0.895	SYNONYMOUS_CODING Oseg1	TF binding site mE1_TFBS_sens
2R	14007580	2R_14007580_SNP [dm3] 2R_18120075_SNP [dm6]	A	T	1.633e^-5	0.895	SYNONYMOUS_CODING stau	TF binding site mE1_TFBS_cad
2R	17549467	2R_17549467_SNP [dm3] 2R_21661962_SNP [dm6]	C	T	1.636e^-5	0.895	UTR_5_PRIME pirk
2L	10292497	2L_10292497_SNP [dm3] 2L_10292497_SNP [dm6]	A	T	1.657e^-5	0.895	UPSTREAM CG5604 DOWNSTREAM Hand INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	9593618	2L_9593618_SNP [dm3] 2L_9593618_SNP [dm6]	A	C	1.711e^-5	0.895	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	650608	3R_650608_SNP [dm3] 3R_4824886_SNP [dm6]	G	T	1.718e^-5	0.895	INTERGENIC
2R	12178581	2R_12178581_SNP [dm3] 2R_16291076_SNP [dm6]	C	G	1.736e^-5	0.895	NON_SYNONYMOUS_CODING JhI-26 UPSTREAM CG30100 & 1 other INTRON CR43730	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20682878	3R_20682878_SNP [dm3] 3R_24857156_SNP [dm6]	G	C	1.754e^-5	0.895	SYNONYMOUS_CODING CG10899 UPSTREAM HdacX DOWNSTREAM ppk22
3R	674796	3R_674796_SNP [dm3] 3R_4849074_SNP [dm6]	G	T	1.923e^-5	0.895	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	9593617	2L_9593617_SNP [dm3] 2L_9593617_SNP [dm6]	A	C	1.954e^-5	0.895	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	9593623	2L_9593623_SNP [dm3] 2L_9593623_SNP [dm6]	T	C	1.954e^-5	0.895	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	9557130	2R_9557130_SNP [dm3] 2R_13669625_SNP [dm6]	T	G	2.134e^-5	0.895	NON_SYNONYMOUS_CODING CG18368 INTRON fas
2L	14998341	2L_14998341_SNP [dm3] 2L_14998341_SNP [dm6]	G	A	2.148e^-5	0.895	UPSTREAM mol INTERGENIC
X	1625912	X_1625912_SNP [dm3] X_1731879_SNP [dm6]	A	G	2.216e^-5	0.895	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13143936	2L_13143936_SNP [dm3] 2L_13143936_SNP [dm6]	C	T	2.263e^-5	0.895	UPSTREAM CG16978 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	21402421	3L_21402421_SNP [dm3] 3L_21409321_SNP [dm6]	T	C	2.286e^-5	0.895	INTRON rgn
3R	9656993	3R_9656993_SNP [dm3] 3R_13831271_SNP [dm6]	A	C	2.292e^-5	0.895	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7577589	3L_7577589_SNP [dm3] 3L_7584489_SNP [dm6]	G	T	2.497e^-5	0.895	SPLICE_SITE_REGION CG14838 INTRON CG14838
2R	14007498	2R_14007498_SNP [dm3] 2R_18119993_SNP [dm6]	T	A	2.550e^-5	0.895	INTRON stau	TF binding site mE1_TFBS_cad
2L	5638634	2L_5638634_DEL [dm3] 2L_5638634_DEL [dm6]	AGTCTTT	GC	2.640e^-5	0.895	INTRON CG31646
3L	20458203	3L_20458203_SNP [dm3] 3L_20465103_SNP [dm6]	G	A	2.656e^-5	0.895	SYNONYMOUS_CODING CG42764 UTR_3_PRIME CG42764 UPSTREAM CG5195
2R	17549524	2R_17549524_SNP [dm3] 2R_21662019_SNP [dm6]	T	A	2.724e^-5	0.895	START_GAINED pirk UTR_5_PRIME pirk
2L	9947225	2L_9947225_SNP [dm3] 2L_9947225_SNP [dm6]	A	T	2.791e^-5	0.895	INTRON CG5853
3R	21360039	3R_21360039_SNP [dm3] 3R_25534317_SNP [dm6]	T	A	2.816e^-5	0.895	INTRON msi
X	8131913	X_8131913_SNP [dm3] X_8237880_SNP [dm6]	T	C	2.837e^-5	0.895	SYNONYMOUS_CODING sdt
3R	14356575	3R_14356575_SNP [dm3] 3R_18530853_SNP [dm6]	T	G	2.916e^-5	0.895	INTRON fru
2L	7151791	2L_7151791_SNP [dm3] 2L_7151791_SNP [dm6]	G	C	2.922e^-5	0.895	INTRON Pvf3
2R	10592305	2R_10592305_SNP [dm3] 2R_14704800_SNP [dm6]	G	A	2.928e^-5	0.895	INTRON mspo
2L	15596578	2L_15596578_SNP [dm3] 2L_15596578_SNP [dm6]	T	A	2.942e^-5	0.895	INTERGENIC
2R	17668235	2R_17668235_SNP [dm3] 2R_21780730_SNP [dm6]	T	G	2.978e^-5	0.895	INTERGENIC
X	1625672	X_1625672_SNP [dm3] X_1731639_SNP [dm6]	C	A	3.059e^-5	0.895	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3179181	2L_3179181_SNP [dm3] 2L_3179181_SNP [dm6]	A	G	3.096e^-5	0.895	INTRON CG34393
2L	10602733	2L_10602733_SNP [dm3] 2L_10602733_SNP [dm6]	G	T	3.108e^-5	0.895	INTRON Trim9
3L	20369927	3L_20369927_SNP [dm3] 3L_20376827_SNP [dm6]	G	A	3.149e^-5	0.895	UPSTREAM Ide & 1 other INTRON RhoBTB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2R	16532029	2R_16532029_SNP [dm3] 2R_20644524_SNP [dm6]	G	A	3.202e^-5	0.895	SYNONYMOUS_CODING DMAP1 UPSTREAM CG33785 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
2L	7403408	2L_7403408_SNP [dm3] 2L_7403408_SNP [dm6]	C	T	3.235e^-5	0.895	INTRON CG5171
2R	9381314	2R_9381314_SNP [dm3] 2R_13493809_SNP [dm6]	A	G	3.327e^-5	0.895	INTRON bbc
2L	13464484	2L_13464484_SNP [dm3] 2L_13464484_SNP [dm6]	T	C	3.338e^-5	0.895	INTRON CG42784
3L	7577601	3L_7577601_SNP [dm3] 3L_7584501_SNP [dm6]	A	T	3.603e^-5	0.895	INTRON CG14838
3L	7577612	3L_7577612_SNP [dm3] 3L_7584512_SNP [dm6]	T	A	3.603e^-5	0.895	INTRON CG14838
2R	11839347	2R_11839347_SNP [dm3] 2R_15951842_SNP [dm6]	C	G	3.675e^-5	0.895	UPSTREAM Strn-Mlck INTRON Strn-Mlck
X	1625864	X_1625864_SNP [dm3] X_1731831_SNP [dm6]	A	T	3.752e^-5	0.895	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21722433	3R_21722433_SNP [dm3] 3R_25896711_SNP [dm6]	C	T	3.794e^-5	0.895	SPLICE_SITE_REGION CG5948 UPSTREAM MCO3 INTRON CG5948
2L	15403291	2L_15403291_DEL [dm3] 2L_15403291_DEL [dm6]	AATTTAGGGATGTAATTCCT...	A	3.810e^-5	0.895	INTERGENIC
2L	8392690	2L_8392690_SNP [dm3] 2L_8392690_SNP [dm6]	C	A	3.812e^-5	0.895	SYNONYMOUS_CODING Acp29AB UPSTREAM CG42820 DOWNSTREAM lectin-29Ca	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	19680509	3L_19680509_SNP [dm3] 3L_19687409_SNP [dm6]	C	A	3.845e^-5	0.895	UPSTREAM Gbeta76C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	21447449	3L_21447449_SNP [dm3] 3L_21454349_SNP [dm6]	G	A	3.862e^-5	0.895	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_sens
2L	12811504	2L_12811504_SNP [dm3] 2L_12811504_SNP [dm6]	A	G	3.919e^-5	0.895	INTERGENIC
2L	13465776	2L_13465776_SNP [dm3] 2L_13465776_SNP [dm6]	T	C	3.938e^-5	0.895	INTRON CG42784
3R	21722431	3R_21722431_SNP [dm3] 3R_25896709_SNP [dm6]	A	C	3.939e^-5	0.895	SPLICE_SITE_REGION CG5948 UPSTREAM MCO3 INTRON CG5948
2L	13461083	2L_13461083_SNP [dm3] 2L_13461083_SNP [dm6]	G	A	3.999e^-5	0.895	UPSTREAM CG42784 DOWNSTREAM CG42810 INTRON CG42784	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7144323	3R_7144323_SNP [dm3] 3R_11318601_SNP [dm6]	G	A	4.129e^-5	0.895	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5689163	2L_5689163_SNP [dm3] 2L_5689163_SNP [dm6]	A	T	4.136e^-5	0.895	INTERGENIC
2R	6743119	2R_6743119_MNP [dm3] 2R_10855614_MNP [dm6]	CAT	ACA	4.163e^-5	0.895	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2R	6743143	2R_6743143_SNP [dm3] 2R_10855638_SNP [dm6]	T	C	4.163e^-5	0.895	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3R	1971881	3R_1971881_SNP [dm3] 3R_6146159_SNP [dm6]	A	T	4.227e^-5	0.895	INTERGENIC
2R	6756066	2R_6756066_SNP [dm3] 2R_10868561_SNP [dm6]	A	T	4.260e^-5	0.895	INTRON CG30015
2L	13465905	2L_13465905_SNP [dm3] 2L_13465905_SNP [dm6]	A	G	4.265e^-5	0.895	INTRON CG42784
3L	24394664	3L_24394664_SNP [dm3] 3L_24401564_SNP [dm6]	A	G	4.269e^-5	0.895	UTR_3_PRIME nvd
2L	15984176	2L_15984176_SNP [dm3] 2L_15984176_SNP [dm6]	G	A	4.438e^-5	0.895	INTERGENIC
3R	24094346	3R_24094346_DEL [dm3] 3R_28268624_DEL [dm6]	AA	A	4.464e^-5	0.895	INTERGENIC
2R	7356409	2R_7356409_SNP [dm3] 2R_11468904_SNP [dm6]	T	G	4.572e^-5	0.895	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	21402418	3L_21402418_SNP [dm3] 3L_21409318_SNP [dm6]	A	C	4.676e^-5	0.895	INTRON rgn
2R	17575064	2R_17575064_DEL [dm3] 2R_21687559_DEL [dm6]	AA	A	4.691e^-5	0.895	UTR_5_PRIME Tbp DOWNSTREAM CG30285	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	13458369	2L_13458369_SNP [dm3] 2L_13458369_SNP [dm6]	A	C	4.790e^-5	0.895	DOWNSTREAM CG42809 INTRON CG42784 EXON CR45684
3L	7577633	3L_7577633_SNP [dm3] 3L_7584533_SNP [dm6]	C	T	4.822e^-5	0.895	SPLICE_SITE_REGION CG14838 SYNONYMOUS_CODING CG14838
2L	15401490	2L_15401490_SNP [dm3] 2L_15401490_SNP [dm6]	C	G	4.887e^-5	0.895	UPSTREAM CR45374 INTERGENIC
3R	21801781	3R_21801781_SNP [dm3] 3R_25976059_SNP [dm6]	T	C	4.898e^-5	0.895	INTRON CG42261
2R	12385561	2R_12385561_SNP [dm3] 2R_16498056_SNP [dm6]	C	T	4.967e^-5	0.895	SYNONYMOUS_CODING CG7813
3R	4659131	3R_4659131_SNP [dm3] 3R_8833409_SNP [dm6]	T	C	5.053e^-5	0.895	UTR_3_PRIME pyd INTRON pyd	TF binding site mE1_TFBS_cad
2L	17890879	2L_17890879_SNP [dm3] 2L_17890879_SNP [dm6]	G	A	5.066e^-5	0.895	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23346321	3L_23346321_SNP [dm3] 3L_23353221_SNP [dm6]	G	C	5.077e^-5	0.895	INTERGENIC
2L	13445803	2L_13445803_INS [dm3] 2L_13445803_INS [dm6]	T	TT	5.187e^-5	0.895	UPSTREAM CG9267 INTRON CG42784	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	4251691	3R_4251691_SNP [dm3] 3R_8425969_SNP [dm6]	C	T	5.254e^-5	0.895	INTRON CG45263
2R	6743140	2R_6743140_DEL [dm3] 2R_10855635_DEL [dm6]	TT	T	5.271e^-5	0.895	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2R	6743145	2R_6743145_SNP [dm3] 2R_10855640_SNP [dm6]	T	G	5.294e^-5	0.895	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2R	7359147	2R_7359147_SNP [dm3] 2R_11471642_SNP [dm6]	T	G	5.301e^-5	0.895	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6743063	2R_6743063_INS [dm3] 2R_10855558_INS [dm6]	T	TGTTT	5.357e^-5	0.895	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3L	7577627	3L_7577627_SNP [dm3] 3L_7584527_SNP [dm6]	T	C	5.379e^-5	0.895	SPLICE_SITE_REGION CG14838 INTRON CG14838
3L	24500141	3L_24500141_SNP [dm3] 3L_24507041_SNP [dm6]	G	T	5.402e^-5	0.895	INTERGENIC
3R	25972075	3R_25972075_SNP [dm3] 3R_30146353_SNP [dm6]	T	C	5.403e^-5	0.895	INTRON AdoR
2R	6743105	2R_6743105_DEL [dm3] 2R_10855600_DEL [dm6]	AAGGT	A	5.431e^-5	0.895	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2R	6743111	2R_6743111_SNP [dm3] 2R_10855606_SNP [dm6]	A	T	5.431e^-5	0.895	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
X	869752	X_869752_SNP [dm3] X_975719_SNP [dm6]	G	A	5.507e^-5	0.895	INTERGENIC
2L	15936613	2L_15936613_SNP [dm3] 2L_15936613_SNP [dm6]	A	G	5.538e^-5	0.895	INTRON beat-Ib
2L	15596612	2L_15596612_SNP [dm3] 2L_15596612_SNP [dm6]	A	G	5.608e^-5	0.895	INTERGENIC
X	8265538	X_8265538_INS [dm3] X_8371505_INS [dm6]	C	CCGTTGTGGTTCGC...	5.670e^-5	0.895	INTERGENIC
2L	8392678	2L_8392678_SNP [dm3] 2L_8392678_SNP [dm6]	G	T	5.683e^-5	0.895	SYNONYMOUS_CODING Acp29AB UPSTREAM CG42820 DOWNSTREAM lectin-29Ca	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	13862381	2L_13862381_SNP [dm3] 2L_13862381_SNP [dm6]	G	A	5.735e^-5	0.895	INTRON CenG1A	TF binding site BDTNP1_TFBS_da mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
2L	15217388	2L_15217388_SNP [dm3] 2L_15217388_SNP [dm6]	A	G	5.760e^-5	0.895	INTERGENIC
2L	17510638	2L_17510638_SNP [dm3] 2L_17510638_SNP [dm6]	T	C	5.799e^-5	0.895	SYNONYMOUS_CODING Dhc36C
2R	16203933	2R_16203933_SNP [dm3] 2R_20316428_SNP [dm6]	A	G	5.812e^-5	0.895	UPSTREAM CG13871 DOWNSTREAM CR44642 INTRON CG13868
2R	6743139	2R_6743139_SNP [dm3] 2R_10855634_SNP [dm6]	C	A	5.913e^-5	0.895	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3L	20435976	3L_20435976_SNP [dm3] 3L_20442876_SNP [dm6]	T	A	5.996e^-5	0.895	INTRON CG5910	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5430166	3L_5430166_SNP [dm3] 3L_5437066_SNP [dm6]	A	G	6.018e^-5	0.895	INTRON CG34391
2R	7362358	2R_7362358_SNP [dm3] 2R_11474853_SNP [dm6]	A	T	6.074e^-5	0.895	START_GAINED inv UTR_5_PRIME inv UPSTREAM inv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15500721	2L_15500721_SNP [dm3] 2L_15500721_SNP [dm6]	C	A	6.203e^-5	0.895	INTRON lace	TF binding site BDTNP1_TFBS_dl
3R	21801475	3R_21801475_SNP [dm3] 3R_25975753_SNP [dm6]	C	T	6.349e^-5	0.895	INTRON CG42261
2R	13906625	2R_13906625_SNP [dm3] 2R_18019120_SNP [dm6]	T	G	6.395e^-5	0.895	SYNONYMOUS_CODING CG5084	TF binding site mE1_TFBS_cad
2L	15401484	2L_15401484_SNP [dm3] 2L_15401484_SNP [dm6]	T	C	6.419e^-5	0.895	UPSTREAM CR45374 INTERGENIC
X	14324705	X_14324705_SNP [dm3] X_14430672_SNP [dm6]	A	G	6.452e^-5	0.895	INTRON dpr8
2R	12026923	2R_12026923_SNP [dm3] 2R_16139418_SNP [dm6]	T	A	6.454e^-5	0.895	INTRON Got1
X	13574642	X_13574642_SNP [dm3] X_13680609_SNP [dm6]	C	A	6.489e^-5	0.895	UPSTREAM CG12177 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22741486	3R_22741486_SNP [dm3] 3R_26915764_SNP [dm6]	A	G	6.504e^-5	0.895	UTR_5_PRIME sda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	6743115	2R_6743115_SNP [dm3] 2R_10855610_SNP [dm6]	C	A	6.608e^-5	0.895	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2R	16527733	2R_16527733_SNP [dm3] 2R_20640228_SNP [dm6]	C	A	6.641e^-5	0.895	SYNONYMOUS_CODING rig UPSTREAM maf-S	TF binding site BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6743082	2R_6743082_SNP [dm3] 2R_10855577_SNP [dm6]	T	A	6.653e^-5	0.895	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2L	13461097	2L_13461097_SNP [dm3] 2L_13461097_SNP [dm6]	A	G	6.661e^-5	0.895	UPSTREAM CG42784 DOWNSTREAM CG42810 INTRON CG42784	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15501144	2L_15501144_SNP [dm3] 2L_15501144_SNP [dm6]	G	C	6.718e^-5	0.895	INTRON lace
3L	22672632	3L_22672632_SNP [dm3] 3L_22679532_SNP [dm6]	C	A	6.724e^-5	0.895	SYNONYMOUS_CODING CG14457
X	12583163	X_12583163_SNP [dm3] X_12689130_SNP [dm6]	G	A	6.802e^-5	0.895	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9932352	2L_9932352_SNP [dm3] 2L_9932352_SNP [dm6]	C	T	6.895e^-5	0.895	UTR_3_PRIME Cpr30F
3R	702157	3R_702157_SNP [dm3] 3R_4876435_SNP [dm6]	A	C	6.913e^-5	0.895	SYNONYMOUS_CODING laf	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14036163	2R_14036163_SNP [dm3] 2R_18148658_SNP [dm6]	G	T	6.936e^-5	0.895	UTR_3_PRIME CG5742 UPSTREAM CG17680	TF binding site BDTNP1_TFBS_dl
3L	16523095	3L_16523095_SNP [dm3] 3L_16529995_SNP [dm6]	G	A	6.965e^-5	0.895	INTRON CG43373
2L	7386299	2L_7386299_SNP [dm3] 2L_7386299_SNP [dm6]	T	C	6.977e^-5	0.895	INTRON CG5149	TF binding site BDTNP1_TFBS_twi
3R	11984393	3R_11984393_SNP [dm3] 3R_16158671_SNP [dm6]	T	C	7.106e^-5	0.895	INTRON CG6006	TF binding site mE1_TFBS_Trl
2L	13461131	2L_13461131_SNP [dm3] 2L_13461131_SNP [dm6]	T	G	7.118e^-5	0.895	UPSTREAM CG42784 DOWNSTREAM CG42810 INTRON CG42784	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	11231529	X_11231529_SNP [dm3] X_11337496_SNP [dm6]	A	G	7.225e^-5	0.895	NON_SYNONYMOUS_CODING Kap3
2L	5649318	2L_5649318_SNP [dm3] 2L_5649318_SNP [dm6]	G	T	7.236e^-5	0.895	INTRON CG31646
3R	7379657	3R_7379657_SNP [dm3] 3R_11553935_SNP [dm6]	T	A	7.404e^-5	0.895	UPSTREAM CG14708 INTERGENIC
3R	23340489	3R_23340489_SNP [dm3] 3R_27514767_SNP [dm6]	A	G	7.474e^-5	0.895	INTERGENIC
3L	7482778	3L_7482778_SNP [dm3] 3L_7489678_SNP [dm6]	C	T	7.552e^-5	0.895	INTERGENIC
3L	22567486	3L_22567486_SNP [dm3] 3L_22574386_SNP [dm6]	C	T	7.578e^-5	0.895	INTERGENIC
2L	13464396	2L_13464396_SNP [dm3] 2L_13464396_SNP [dm6]	A	T	7.594e^-5	0.895	INTRON CG42784
3R	24847020	3R_24847020_SNP [dm3] 3R_29021298_SNP [dm6]	A	T	7.623e^-5	0.895	UPSTREAM wat EXON CR44264
3L	655658	3L_655658_SNP [dm3] 3L_655658_SNP [dm6]	T	C	7.640e^-5	0.895	SYNONYMOUS_CODING Rev1
2R	18180425	2R_18180425_DEL [dm3] 2R_22292920_DEL [dm6]	CGTC	C	7.679e^-5	0.895	UPSTREAM CG5819 DOWNSTREAM CR43422 INTERGENIC
3R	6006243	3R_6006243_SNP [dm3] 3R_10180521_SNP [dm6]	A	G	7.755e^-5	0.895	INTRON CG12814
2R	16938217	2R_16938217_SNP [dm3] 2R_21050712_SNP [dm6]	G	T	7.796e^-5	0.895	UTR_3_PRIME shg	TF binding site BDTNP1_TFBS_dl
3L	23713039	3L_23713039_SNP [dm3] 3L_23719939_SNP [dm6]	G	C	7.837e^-5	0.895	INTERGENIC	transposable element FlyBase
3R	21183670	3R_21183670_SNP [dm3] 3R_25357948_SNP [dm6]	T	G	7.865e^-5	0.895	SYNONYMOUS_CODING Fur1 UPSTREAM CG11913
2R	14587409	2R_14587409_SNP [dm3] 2R_18699904_SNP [dm6]	A	G	7.883e^-5	0.895	SYNONYMOUS_CODING Sik3
3L	16282779	3L_16282779_SNP [dm3] 3L_16289679_SNP [dm6]	G	A	7.892e^-5	0.895	DOWNSTREAM CG13045 INTERGENIC
3R	5587282	3R_5587282_SNP [dm3] 3R_9761560_SNP [dm6]	T	A	7.900e^-5	0.895	UTR_3_PRIME Snap24 DOWNSTREAM CG8417
2R	15511810	2R_15511810_SNP [dm3] 2R_19624305_SNP [dm6]	C	T	8.116e^-5	0.895	INTRON sm	TF binding site mE1_TFBS_cad
3L	2757776	3L_2757776_SNP [dm3] 3L_2757776_SNP [dm6]	G	A	8.132e^-5	0.895	INTRON Mrtf
3R	14006597	3R_14006597_SNP [dm3] 3R_18180875_SNP [dm6]	T	A	8.185e^-5	0.895	SPLICE_SITE_REGION cdm DOWNSTREAM PP2A-B' INTRON cdm
2R	14295347	2R_14295347_SNP [dm3] 2R_18407842_SNP [dm6]	G	T	8.191e^-5	0.895	UTR_5_PRIME GstE8 DOWNSTREAM GstE7	TF binding site mE1_TFBS_Trl
2R	4162435	2R_4162435_SNP [dm3] 2R_8274930_SNP [dm6]	T	A	8.247e^-5	0.895	INTERGENIC
3L	16554491	3L_16554491_SNP [dm3] 3L_16561391_SNP [dm6]	A	G	8.374e^-5	0.895	INTERGENIC
2R	16203938	2R_16203938_SNP [dm3] 2R_20316433_SNP [dm6]	A	G	8.403e^-5	0.895	UPSTREAM CG13871 DOWNSTREAM CR44642 INTRON CG13868
3L	17472771	3L_17472771_SNP [dm3] 3L_17479671_SNP [dm6]	C	G	8.415e^-5	0.895	NON_SYNONYMOUS_CODING qjt UPSTREAM CG13733 DOWNSTREAM CG6333
2L	14999409	2L_14999409_SNP [dm3] 2L_14999409_SNP [dm6]	A	G	8.422e^-5	0.895	INTERGENIC
3L	21402444	3L_21402444_SNP [dm3] 3L_21409344_SNP [dm6]	C	T	8.436e^-5	0.895	INTRON rgn
2L	15500701	2L_15500701_SNP [dm3] 2L_15500701_SNP [dm6]	C	T	8.508e^-5	0.895	INTRON lace	TF binding site BDTNP1_TFBS_dl
3R	21801468	3R_21801468_SNP [dm3] 3R_25975746_SNP [dm6]	T	C	8.552e^-5	0.895	INTRON CG42261
2R	12026951	2R_12026951_SNP [dm3] 2R_16139446_SNP [dm6]	T	C	8.570e^-5	0.895	INTRON Got1
X	2764581	X_2764581_INS [dm3] X_2870548_INS [dm6]	T	TT	8.613e^-5	0.895	INTRON kirre
3R	667649	3R_667649_SNP [dm3] 3R_4841927_SNP [dm6]	C	T	8.691e^-5	0.895	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	13459479	2L_13459479_SNP [dm3] 2L_13459479_SNP [dm6]	T	C	8.769e^-5	0.895	UPSTREAM CR45684 & 1 other INTRON CG42784
2L	13461064	2L_13461064_SNP [dm3] 2L_13461064_SNP [dm6]	C	G	8.789e^-5	0.895	UPSTREAM CG42784 DOWNSTREAM CG42810 INTRON CG42784	TF binding site mE1_TFBS_HSA
3R	23340497	3R_23340497_SNP [dm3] 3R_27514775_SNP [dm6]	C	T	8.819e^-5	0.895	INTERGENIC
2R	17550040	2R_17550040_SNP [dm3] 2R_21662535_SNP [dm6]	A	T	8.837e^-5	0.895	UPSTREAM CR44748 & 1 other INTRON pirk
3R	19423150	3R_19423150_SNP [dm3] 3R_23597428_SNP [dm6]	T	C	8.876e^-5	0.895	NON_SYNONYMOUS_CODING CG10183
2R	17550113	2R_17550113_SNP [dm3] 2R_21662608_SNP [dm6]	G	T	8.915e^-5	0.895	UPSTREAM CR44748 & 1 other INTRON pirk
2L	3916568	2L_3916568_SNP [dm3] 2L_3916568_SNP [dm6]	A	C	8.940e^-5	0.895	INTRON fred
2L	3813763	2L_3813763_SNP [dm3] 2L_3813763_SNP [dm6]	T	C	8.986e^-5	0.895	UPSTREAM CG3407 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17575071	2R_17575071_SNP [dm3] 2R_21687566_SNP [dm6]	T	A	9.023e^-5	0.895	UTR_5_PRIME Tbp DOWNSTREAM CG30285	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2757739	3L_2757739_SNP [dm3] 3L_2757739_SNP [dm6]	A	T	9.119e^-5	0.895	INTRON Mrtf
3L	2757740	3L_2757740_SNP [dm3] 3L_2757740_SNP [dm6]	T	A	9.119e^-5	0.895	INTRON Mrtf
3L	21616732	3L_21616732_SNP [dm3] 3L_21623632_SNP [dm6]	T	C	9.130e^-5	0.895	INTRON CG7166
3R	13844157	3R_13844157_SNP [dm3] 3R_18018435_SNP [dm6]	T	C	9.260e^-5	0.895	UTR_3_PRIME cpo UPSTREAM DNaseII
3R	19423170	3R_19423170_SNP [dm3] 3R_23597448_SNP [dm6]	G	A	9.392e^-5	0.895	SYNONYMOUS_CODING CG10183
3L	22631373	3L_22631373_SNP [dm3] 3L_22638273_SNP [dm6]	T	C	9.419e^-5	0.895	UPSTREAM CG14459 INTERGENIC
3R	21818005	3R_21818005_INS [dm3] 3R_25992283_INS [dm6]	C	CTAC	9.433e^-5	0.895	INTRON Nf1
3R	18882601	3R_18882601_SNP [dm3] 3R_23056879_SNP [dm6]	G	A	9.453e^-5	0.895	INTRON CG17119	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11704687	2L_11704687_DEL [dm3] 2L_11704687_DEL [dm6]	GGAACATAAGCTTGATTCGG...	G	9.481e^-5	0.895	INTERGENIC
3R	19423193	3R_19423193_SNP [dm3] 3R_23597471_SNP [dm6]	G	C	9.487e^-5	0.895	NON_SYNONYMOUS_CODING CG10183
3L	22677848	3L_22677848_SNP [dm3] 3L_22684748_SNP [dm6]	A	G	9.603e^-5	0.895	INTERGENIC
3L	7577623	3L_7577623_SNP [dm3] 3L_7584523_SNP [dm6]	T	C	9.661e^-5	0.895	INTRON CG14838
X	10936255	X_10936255_SNP [dm3] X_11042222_SNP [dm6]	T	C	9.667e^-5	0.895	INTERGENIC
2R	18184656	2R_18184656_SNP [dm3] 2R_22297151_SNP [dm6]	A	T	9.728e^-5	0.895	DOWNSTREAM CG5819 INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	3521030	2R_3521030_SNP [dm3] 2R_7633525_SNP [dm6]	T	G	9.828e^-5	0.895	UTR_3_PRIME CG43341 INTRON CG43340 EXON CR45131
2R	15062944	2R_15062944_SNP [dm3] 2R_19175439_SNP [dm6]	A	T	9.870e^-5	0.895	INTRON CG10737
3R	20232495	3R_20232495_SNP [dm3] 3R_24406773_SNP [dm6]	C	T	9.892e^-5	0.895	INTRON nAChRalpha1
3L	9050004	3L_9050004_SNP [dm3] 3L_9056904_SNP [dm6]	A	G	9.984e^-5	0.895	INTRON Argk	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	3523708	3L_3523708_SNP [dm3] 3L_3523708_SNP [dm6]	T	C	1.002e^-4	0.895	UPSTREAM CR45043 INTRON Eip63E
X	12380279	X_12380279_SNP [dm3] X_12486246_SNP [dm6]	G	A	1.007e^-4	0.895	UPSTREAM Cpr11A INTERGENIC
3L	10861738	3L_10861738_SNP [dm3] 3L_10868638_SNP [dm6]	G	A	1.013e^-4	0.895	INTRON tna
X	16712024	X_16712024_SNP [dm3] X_16817991_SNP [dm6]	C	T	1.015e^-4	0.895	INTRON CG4829
2L	15339825	2L_15339825_SNP [dm3] 2L_15339825_SNP [dm6]	T	G	1.017e^-4	0.895	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	12380426	X_12380426_SNP [dm3] X_12486393_SNP [dm6]	C	T	1.022e^-4	0.895	UPSTREAM Cpr11A INTERGENIC
2R	14662731	2R_14662731_SNP [dm3] 2R_18775226_SNP [dm6]	C	A	1.024e^-4	0.895	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	18184651	2R_18184651_INS [dm3] 2R_22297146_INS [dm6]	T	TAGTCGAAAAAAATTTAAAT...	1.029e^-4	0.895	DOWNSTREAM CG5819 INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	17550185	2R_17550185_SNP [dm3] 2R_21662680_SNP [dm6]	T	G	1.029e^-4	0.895	UPSTREAM CR44748 & 1 other INTRON pirk
3L	22631538	3L_22631538_SNP [dm3] 3L_22638438_SNP [dm6]	G	A	1.036e^-4	0.895	UPSTREAM CG14459 INTERGENIC
2R	6743098	2R_6743098_SNP [dm3] 2R_10855593_SNP [dm6]	T	C	1.037e^-4	0.895	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2R	17642083	2R_17642083_SNP [dm3] 2R_21754578_SNP [dm6]	C	G	1.037e^-4	0.895	INTERGENIC
2R	9885070	2R_9885070_SNP [dm3] 2R_13997565_SNP [dm6]	T	C	1.040e^-4	0.895	INTRON mam	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	3200047	2L_3200047_SNP [dm3] 2L_3200047_SNP [dm6]	G	A	1.046e^-4	0.895	UPSTREAM CG34393 INTRON CG34393
2L	11704762	2L_11704762_SNP [dm3] 2L_11704762_SNP [dm6]	G	T	1.048e^-4	0.895	INTERGENIC
3R	24723042	3R_24723042_SNP [dm3] 3R_28897320_SNP [dm6]	C	T	1.055e^-4	0.895	INTRON Doa
2R	9557165	2R_9557165_SNP [dm3] 2R_13669660_SNP [dm6]	A	G	1.055e^-4	0.895	SYNONYMOUS_CODING CG18368 INTRON fas
3R	10247835	3R_10247835_SNP [dm3] 3R_14422113_SNP [dm6]	T	C	1.063e^-4	0.898	DOWNSTREAM natalisin INTRON cv-c EXON CR44176
3L	21611992	3L_21611992_SNP [dm3] 3L_21618892_SNP [dm6]	C	G	1.074e^-4	0.901	SYNONYMOUS_CODING CG11307	TF binding site mE1_TFBS_HSA
3L	17710615	3L_17710615_SNP [dm3] 3L_17717515_SNP [dm6]	T	C	1.081e^-4	0.901	INTRON Ccn
3L	13506286	3L_13506286_SNP [dm3] 3L_13513186_SNP [dm6]	C	G	1.083e^-4	0.901	UPSTREAM Liprin-beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	14377483	2L_14377483_SNP [dm3] 2L_14377483_SNP [dm6]	G	C	1.086e^-4	0.901	DOWNSTREAM ppk INTERGENIC
3L	20356840	3L_20356840_SNP [dm3] 3L_20363740_SNP [dm6]	C	T	1.092e^-4	0.902	SYNONYMOUS_CODING Toll-9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17880820	2L_17880820_SNP [dm3] 2L_17880820_SNP [dm6]	G	A	1.101e^-4	0.903	INTERGENIC
3L	8404570	3L_8404570_SNP [dm3] 3L_8411470_SNP [dm6]	C	T	1.103e^-4	0.903	SYNONYMOUS_CODING Oseg1 UPSTREAM Exo70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	21722833	3R_21722833_SNP [dm3] 3R_25897111_SNP [dm6]	T	G	1.126e^-4	0.908	UTR_3_PRIME CG5948 UPSTREAM MCO3
3L	14112948	3L_14112948_SNP [dm3] 3L_14119848_SNP [dm6]	G	A	1.129e^-4	0.908	INTRON Sox21b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14222237	2R_14222237_SNP [dm3] 2R_18334732_SNP [dm6]	G	A	1.130e^-4	0.908	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	15503136	2L_15503136_SNP [dm3] 2L_15503136_SNP [dm6]	T	C	1.136e^-4	0.908	SYNONYMOUS_CODING lace
2R	14587412	2R_14587412_SNP [dm3] 2R_18699907_SNP [dm6]	G	T	1.139e^-4	0.908	SYNONYMOUS_CODING Sik3
2L	2517478	2L_2517478_SNP [dm3] 2L_2517478_SNP [dm6]	C	A	1.143e^-4	0.908	SYNONYMOUS_CODING CG3528
2R	14662727	2R_14662727_SNP [dm3] 2R_18775222_SNP [dm6]	A	C	1.149e^-4	0.908	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10861687	3L_10861687_SNP [dm3] 3L_10868587_SNP [dm6]	T	C	1.159e^-4	0.908	INTRON tna
2R	6767311	2R_6767311_SNP [dm3] 2R_10879806_SNP [dm6]	T	G	1.160e^-4	0.908	UPSTREAM Pex6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_ttk
3L	7823953	3L_7823953_SNP [dm3] 3L_7830853_SNP [dm6]	G	A	1.168e^-4	0.908	SYNONYMOUS_CODING Pdp1 INTRON Pdp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11839205	2R_11839205_SNP [dm3] 2R_15951700_SNP [dm6]	A	T	1.170e^-4	0.908	UTR_3_PRIME Strn-Mlck UPSTREAM Strn-Mlck INTRON Strn-Mlck
2L	7386307	2L_7386307_SNP [dm3] 2L_7386307_SNP [dm6]	G	A	1.189e^-4	0.908	INTRON CG5149	TF binding site BDTNP1_TFBS_twi
2L	8715082	2L_8715082_SNP [dm3] 2L_8715082_SNP [dm6]	A	G	1.190e^-4	0.908	UPSTREAM raw INTRON raw
3L	3519681	3L_3519681_SNP [dm3] 3L_3519681_SNP [dm6]	A	T	1.190e^-4	0.908	INTRON Eip63E
2R	10563275	2R_10563275_SNP [dm3] 2R_14675770_SNP [dm6]	G	A	1.190e^-4	0.908	SYNONYMOUS_CODING CG30480 UTR_5_PRIME CG30479 UPSTREAM CG30479 INTRON mspo	TF binding site mE1_TFBS_sens
2R	12243208	2R_12243208_SNP [dm3] 2R_16355703_SNP [dm6]	C	T	1.192e^-4	0.908	UPSTREAM CG30098 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15063048	2R_15063048_SNP [dm3] 2R_19175543_SNP [dm6]	A	T	1.198e^-4	0.908	INTRON CG10737
3L	24500144	3L_24500144_SNP [dm3] 3L_24507044_SNP [dm6]	A	C	1.199e^-4	0.908	INTERGENIC
2R	7363596	2R_7363596_SNP [dm3] 2R_11476091_SNP [dm6]	G	T	1.205e^-4	0.908	NON_SYNONYMOUS_CODING inv	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24921264	3R_24921264_SNP [dm3] 3R_29095542_SNP [dm6]	C	G	1.207e^-4	0.908	INTRON CG11873 EXON CR45030
2L	9312444	2L_9312444_DEL [dm3] 2L_9312444_DEL [dm6]	TT	T	1.210e^-4	0.908	INTERGENIC
3R	21722835	3R_21722835_SNP [dm3] 3R_25897113_SNP [dm6]	C	T	1.219e^-4	0.911	UTR_3_PRIME CG5948 UPSTREAM MCO3
2R	14662925	2R_14662925_SNP [dm3] 2R_18775420_SNP [dm6]	T	A	1.225e^-4	0.912	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7598488	2L_7598488_SNP [dm3] 2L_7598488_SNP [dm6]	A	T	1.231e^-4	0.912	INTERGENIC
2R	12411331	2R_12411331_SNP [dm3] 2R_16523826_SNP [dm6]	G	A	1.237e^-4	0.914	INTRON Sema-2a
2L	13465883	2L_13465883_SNP [dm3] 2L_13465883_SNP [dm6]	C	T	1.251e^-4	0.92	INTRON CG42784
3R	19423115	3R_19423115_SNP [dm3] 3R_23597393_SNP [dm6]	G	A	1.255e^-4	0.92	NON_SYNONYMOUS_CODING CG10183
X	16174510	X_16174510_SNP [dm3] X_16280477_SNP [dm6]	A	T	1.265e^-4	0.92	UTR_5_PRIME eas INTRON eas
2L	16149660	2L_16149660_SNP [dm3] 2L_16149660_SNP [dm6]	T	C	1.265e^-4	0.92	INTERGENIC
2L	13448300	2L_13448300_SNP [dm3] 2L_13448300_SNP [dm6]	C	T	1.271e^-4	0.92	SYNONYMOUS_CODING Hsp60D INTRON CG42784
2L	13715343	2L_13715343_SNP [dm3] 2L_13715343_SNP [dm6]	G	A	1.275e^-4	0.92	INTRON CG31814
2R	14035812	2R_14035812_SNP [dm3] 2R_18148307_SNP [dm6]	G	A	1.287e^-4	0.925	UTR_3_PRIME CG5742 UPSTREAM CG17680 DOWNSTREAM CG5742	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12026916	2R_12026916_SNP [dm3] 2R_16139411_SNP [dm6]	T	G	1.306e^-4	0.928	INTRON Got1
2R	6943755	2R_6943755_SNP [dm3] 2R_11056250_SNP [dm6]	C	A	1.309e^-4	0.928	INTRON luna
2L	13862365	2L_13862365_SNP [dm3] 2L_13862365_SNP [dm6]	G	T	1.322e^-4	0.928	INTRON CenG1A	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
X	10863773	X_10863773_SNP [dm3] X_10969740_SNP [dm6]	C	T	1.324e^-4	0.928	INTRON CG42339
2L	10292380	2L_10292380_SNP [dm3] 2L_10292380_SNP [dm6]	A	C	1.326e^-4	0.928	UPSTREAM CG5604 DOWNSTREAM Hand INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	17736394	2R_17736394_INS [dm3] 2R_21848889_INS [dm6]	A	AGTTACAAATTGAATCTTTC...	1.327e^-4	0.928	UPSTREAM tRNA:CR30406 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4165521	2L_4165521_SNP [dm3] 2L_4165521_SNP [dm6]	A	G	1.333e^-4	0.928	NON_SYNONYMOUS_CODING Or24a
X	21916224	X_21916224_SNP [dm3] X_22514388_SNP [dm6]	C	T	1.334e^-4	0.928	UPSTREAM CG17600 DOWNSTREAM CR43962 INTERGENIC
2L	13461042	2L_13461042_SNP [dm3] 2L_13461042_SNP [dm6]	C	T	1.336e^-4	0.928	UPSTREAM CG42784 DOWNSTREAM CG42810 INTRON CG42784	TF binding site mE1_TFBS_HSA
X	4076246	X_4076246_SNP [dm3] X_4182213_SNP [dm6]	C	A	1.354e^-4	0.929	INTRON Fas2
3L	21447448	3L_21447448_SNP [dm3] 3L_21454348_SNP [dm6]	G	A	1.355e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_sens
2R	7362212	2R_7362212_SNP [dm3] 2R_11474707_SNP [dm6]	T	C	1.372e^-4	0.929	SPLICE_SITE_REGION inv UTR_5_PRIME inv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	13266979	3R_13266979_SNP [dm3] 3R_17441257_SNP [dm6]	T	C	1.375e^-4	0.929	UPSTREAM CG14331 INTRON CG5873
3R	442316	3R_442316_SNP [dm3] 3R_4616594_SNP [dm6]	T	G	1.376e^-4	0.929	INTRON 5-HT2A
3R	9148831	3R_9148831_SNP [dm3] 3R_13323109_SNP [dm6]	G	A	1.379e^-4	0.929	INTERGENIC
2L	14535294	2L_14535294_SNP [dm3] 2L_14535294_SNP [dm6]	C	G	1.382e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	8566354	2R_8566354_SNP [dm3] 2R_12678849_SNP [dm6]	G	A	1.385e^-4	0.929	INTRON CG42708
3L	776198	3L_776198_SNP [dm3] 3L_776198_SNP [dm6]	C	T	1.396e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3L	22579102	3L_22579102_SNP [dm3] 3L_22586002_SNP [dm6]	C	A	1.399e^-4	0.929	INTRON CG14459
3L	14512789	3L_14512789_SNP [dm3] 3L_14519689_SNP [dm6]	G	T	1.403e^-4	0.929	DOWNSTREAM CG4613 INTRON bbg
2R	14662928	2R_14662928_SNP [dm3] 2R_18775423_SNP [dm6]	G	C	1.406e^-4	0.929	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7376000	2L_7376000_SNP [dm3] 2L_7376000_SNP [dm6]	A	T	1.410e^-4	0.929	INTRON Wnt10
2R	9381315	2R_9381315_SNP [dm3] 2R_13493810_SNP [dm6]	G	T	1.417e^-4	0.929	INTRON bbc
3L	7695623	3L_7695623_SNP [dm3] 3L_7702523_SNP [dm6]	A	T	1.420e^-4	0.929	INTRON CG32373 & 1 other
2R	17550167	2R_17550167_SNP [dm3] 2R_21662662_SNP [dm6]	C	A	1.431e^-4	0.929	UPSTREAM CR44748 & 1 other INTRON pirk
2L	11391754	2L_11391754_SNP [dm3] 2L_11391754_SNP [dm6]	A	G	1.436e^-4	0.929	INTRON CR43681	regulatory region REDfly_CRMs
2L	15745025	2L_15745025_SNP [dm3] 2L_15745025_SNP [dm6]	T	A	1.441e^-4	0.929	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Trl
2L	18242534	2L_18242534_SNP [dm3] 2L_18242534_SNP [dm6]	A	T	1.444e^-4	0.929	INTRON CG42750
3R	4854246	3R_4854246_SNP [dm3] 3R_9028524_SNP [dm6]	A	G	1.446e^-4	0.929	INTRON neur	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4799940	2L_4799940_SNP [dm3] 2L_4799940_SNP [dm6]	A	T	1.446e^-4	0.929	INTRON Clect27	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	1971882	3R_1971882_SNP [dm3] 3R_6146160_SNP [dm6]	G	A	1.451e^-4	0.929	INTERGENIC
X	22291383	X_22291383_SNP [dm3] X_22889547_SNP [dm6]	T	A	1.453e^-4	0.929	INTERGENIC	transposable element FlyBase
2L	15596557	2L_15596557_SNP [dm3] 2L_15596557_SNP [dm6]	G	A	1.460e^-4	0.929	INTERGENIC
3R	15432051	3R_15432051_SNP [dm3] 3R_19606329_SNP [dm6]	T	C	1.462e^-4	0.929	UTR_3_PRIME CG7342 UPSTREAM CG17751
3R	23189059	3R_23189059_SNP [dm3] 3R_27363337_SNP [dm6]	A	C	1.466e^-4	0.929	SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_chinmo
2L	13862366	2L_13862366_SNP [dm3] 2L_13862366_SNP [dm6]	A	G	1.480e^-4	0.934	INTRON CenG1A	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
3R	24925086	3R_24925086_SNP [dm3] 3R_29099364_SNP [dm6]	A	T	1.487e^-4	0.934	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21743085	3R_21743085_SNP [dm3] 3R_25917363_SNP [dm6]	G	A	1.494e^-4	0.934	SYNONYMOUS_CODING CG42235 DOWNSTREAM CG42235 INTRON CG42235
2L	15303190	2L_15303190_SNP [dm3] 2L_15303190_SNP [dm6]	T	C	1.498e^-4	0.934	INTERGENIC
2R	4189831	2R_4189831_SNP [dm3] 2R_8302326_SNP [dm6]	G	A	1.501e^-4	0.934	INTERGENIC
2R	16363318	2R_16363318_SNP [dm3] 2R_20475813_SNP [dm6]	T	A	1.509e^-4	0.934	INTRON CG12484
3R	23474557	3R_23474557_SNP [dm3] 3R_27648835_SNP [dm6]	C	T	1.510e^-4	0.934	NON_SYNONYMOUS_CODING tau INTRON tau
3R	14660396	3R_14660396_SNP [dm3] 3R_18834674_SNP [dm6]	C	A	1.529e^-4	0.941	INTRON CG18208
2L	15505552	2L_15505552_SNP [dm3] 2L_15505552_SNP [dm6]	T	C	1.531e^-4	0.941	DOWNSTREAM lace INTERGENIC
2L	11391888	2L_11391888_SNP [dm3] 2L_11391888_SNP [dm6]	A	T	1.539e^-4	0.941	INTRON CR43681	regulatory region REDfly_CRMs
3R	811397	3R_811397_SNP [dm3] 3R_4985675_SNP [dm6]	A	C	1.539e^-4	0.941	DOWNSTREAM CG2022 EXON CR43424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2R	18184659	2R_18184659_SNP [dm3] 2R_22297154_SNP [dm6]	C	T	1.550e^-4	0.942	DOWNSTREAM CG5819 INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	6457745	3R_6457745_SNP [dm3] 3R_10632023_SNP [dm6]	A	T	1.552e^-4	0.942	INTRON hth	TF binding site mE1_TFBS_cad
2R	12180234	2R_12180234_SNP [dm3] 2R_16292729_SNP [dm6]	G	A	1.558e^-4	0.942	DOWNSTREAM CG30100 & 1 other INTRON CG7747
3R	882424	3R_882424_SNP [dm3] 3R_5056702_SNP [dm6]	G	A	1.566e^-4	0.942	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8712346	2L_8712346_SNP [dm3] 2L_8712346_SNP [dm6]	T	G	1.574e^-4	0.942	INTRON raw
2L	7598483	2L_7598483_SNP [dm3] 2L_7598483_SNP [dm6]	A	C	1.574e^-4	0.942	INTERGENIC
2R	12562709	2R_12562709_SNP [dm3] 2R_16675204_SNP [dm6]	G	C	1.582e^-4	0.942	SYNONYMOUS_CODING CG30463
3L	20709370	3L_20709370_SNP [dm3] 3L_20716270_SNP [dm6]	G	T	1.584e^-4	0.942	UTR_3_PRIME cmpy INTRON cmpy	TF binding site BDTNP1_TFBS_twi
2L	13862398	2L_13862398_SNP [dm3] 2L_13862398_SNP [dm6]	T	C	1.586e^-4	0.942	INTRON CenG1A	TF binding site BDTNP1_TFBS_da mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
2L	3898021	2L_3898021_INS [dm3] 2L_3898021_INS [dm6]	C	CG	1.592e^-4	0.942	INTRON capu
2R	16527742	2R_16527742_SNP [dm3] 2R_20640237_SNP [dm6]	C	G	1.614e^-4	0.949	SYNONYMOUS_CODING rig UPSTREAM maf-S	TF binding site BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5689790	2L_5689790_SNP [dm3] 2L_5689790_SNP [dm6]	C	T	1.620e^-4	0.949	UPSTREAM CR44819 DOWNSTREAM CR44820 INTERGENIC
2L	13461058	2L_13461058_SNP [dm3] 2L_13461058_SNP [dm6]	A	G	1.627e^-4	0.949	UPSTREAM CG42784 DOWNSTREAM CG42810 INTRON CG42784	TF binding site mE1_TFBS_HSA
3L	20338640	3L_20338640_SNP [dm3] 3L_20345540_SNP [dm6]	T	G	1.630e^-4	0.949	DOWNSTREAM Rbbp5 EXON CR45385
2R	7356649	2R_7356649_SNP [dm3] 2R_11469144_SNP [dm6]	T	A	1.675e^-4	0.949	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	21873219	3L_21873219_DEL [dm3] 3L_21880119_DEL [dm6]	TTGCTGT	T	1.676e^-4	0.949	INTRON mub	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	8715186	2L_8715186_DEL [dm3] 2L_8715186_DEL [dm6]	AGAAAATCAAA...	CTTTG	1.679e^-4	0.949	UPSTREAM raw INTRON raw
2L	15737758	2L_15737758_SNP [dm3] 2L_15737758_SNP [dm6]	A	T	1.686e^-4	0.949	NON_SYNONYMOUS_CODING CycE	regulatory region FlyBase REDfly_CRMs
3R	20954811	3R_20954811_SNP [dm3] 3R_25129089_SNP [dm6]	A	T	1.686e^-4	0.949	SYNONYMOUS_CODING Clbn
2L	2517525	2L_2517525_SNP [dm3] 2L_2517525_SNP [dm6]	G	A	1.689e^-4	0.949	SYNONYMOUS_CODING CG3528
3R	9125962	3R_9125962_SNP [dm3] 3R_13300240_SNP [dm6]	A	G	1.689e^-4	0.949	SYNONYMOUS_CODING CG8774
2R	14662733	2R_14662733_SNP [dm3] 2R_18775228_SNP [dm6]	T	A	1.694e^-4	0.949	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	23587154	3R_23587154_SNP [dm3] 3R_27761432_SNP [dm6]	C	A	1.694e^-4	0.949	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15186219	2L_15186219_SNP [dm3] 2L_15186219_SNP [dm6]	A	G	1.700e^-4	0.949	INTRON CG4168
3L	654494	3L_654494_SNP [dm3] 3L_654494_SNP [dm6]	A	C	1.708e^-4	0.949	UPSTREAM MED30 INTRON Rev1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25741884	3R_25741884_SNP [dm3] 3R_29916162_SNP [dm6]	A	C	1.711e^-4	0.949	SYNONYMOUS_CODING trp UTR_3_PRIME trp	TF binding site mE1_TFBS_chinmo
3R	801709	3R_801709_DEL [dm3] 3R_4975987_DEL [dm6]	AAGCAGGGCCAGGTACGAAA...	A	1.711e^-4	0.949	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
3L	14512790	3L_14512790_SNP [dm3] 3L_14519690_SNP [dm6]	A	C	1.713e^-4	0.949	DOWNSTREAM CG4613 INTRON bbg
2L	9812447	2L_9812447_SNP [dm3] 2L_9812447_SNP [dm6]	C	T	1.716e^-4	0.949	INTRON nAChRalpha6
3R	9496221	3R_9496221_SNP [dm3] 3R_13670499_SNP [dm6]	T	C	1.729e^-4	0.949	INTRON Task6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	23223568	3L_23223568_SNP [dm3] 3L_23230468_SNP [dm6]	C	A	1.739e^-4	0.949	INTRON nAChRalpha4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	21794099	3R_21794099_SNP [dm3] 3R_25968377_SNP [dm6]	C	T	1.741e^-4	0.949	INTERGENIC
3L	3523693	3L_3523693_SNP [dm3] 3L_3523693_SNP [dm6]	A	T	1.743e^-4	0.949	UPSTREAM CR45043 INTRON Eip63E	TF binding site mE1_TFBS_HSA
2L	13461045	2L_13461045_SNP [dm3] 2L_13461045_SNP [dm6]	A	C	1.753e^-4	0.949	UPSTREAM CG42784 DOWNSTREAM CG42810 INTRON CG42784	TF binding site mE1_TFBS_HSA
2R	9627775	2R_9627775_SNP [dm3] 2R_13740270_SNP [dm6]	C	A	1.765e^-4	0.949	INTRON fas
2L	17836535	2L_17836535_SNP [dm3] 2L_17836535_SNP [dm6]	C	G	1.769e^-4	0.949	INTRON CadN2
3L	17710914	3L_17710914_SNP [dm3] 3L_17717814_SNP [dm6]	C	A	1.773e^-4	0.949	INTRON Ccn
3R	704720	3R_704720_SNP [dm3] 3R_4878998_SNP [dm6]	A	G	1.786e^-4	0.949	UPSTREAM laf INTERGENIC
3R	1883341	3R_1883341_SNP [dm3] 3R_6057619_SNP [dm6]	T	C	1.790e^-4	0.949	UPSTREAM CG15580 INTERGENIC
3L	21402583	3L_21402583_SNP [dm3] 3L_21409483_SNP [dm6]	G	A	1.793e^-4	0.949	INTRON rgn
3R	20919926	3R_20919926_INS [dm3] 3R_25094204_INS [dm6]	G	GG	1.800e^-4	0.949	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	11707162	2L_11707162_SNP [dm3] 2L_11707162_SNP [dm6]	G	A	1.803e^-4	0.949	INTERGENIC
X	4075555	X_4075555_SNP [dm3] X_4181522_SNP [dm6]	G	A	1.814e^-4	0.949	INTRON Fas2
2R	14166202	2R_14166202_SNP [dm3] 2R_18278697_SNP [dm6]	G	A	1.814e^-4	0.949	UTR_3_PRIME pen-2 & 1 other DOWNSTREAM sbb & 1 other
2L	3178802	2L_3178802_SNP [dm3] 2L_3178802_SNP [dm6]	T	C	1.818e^-4	0.949	INTRON CG34393
2L	13461191	2L_13461191_SNP [dm3] 2L_13461191_SNP [dm6]	C	T	1.822e^-4	0.949	UPSTREAM CG42784 INTRON CG42784	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21850261	3L_21850261_SNP [dm3] 3L_21857161_SNP [dm6]	G	A	1.823e^-4	0.949	INTRON mub
2R	6237715	2R_6237715_SNP [dm3] 2R_10350210_SNP [dm6]	T	A	1.823e^-4	0.949	INTRON CG42732
3L	527281	3L_527281_SNP [dm3] 3L_527281_SNP [dm6]	A	T	1.829e^-4	0.949	UPSTREAM CR45117 INTRON klar EXON CR45118
2R	6782651	2R_6782651_SNP [dm3] 2R_10895146_SNP [dm6]	C	T	1.835e^-4	0.949	UPSTREAM cag INTRON CG12942	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	17550085	2R_17550085_SNP [dm3] 2R_21662580_SNP [dm6]	C	G	1.836e^-4	0.949	UPSTREAM CR44748 & 1 other INTRON pirk
2L	5689401	2L_5689401_SNP [dm3] 2L_5689401_SNP [dm6]	A	G	1.843e^-4	0.949	INTERGENIC
3L	2023317	3L_2023317_SNP [dm3] 3L_2023317_SNP [dm6]	G	T	1.844e^-4	0.949	SYNONYMOUS_CODING CG42356
2L	15936610	2L_15936610_SNP [dm3] 2L_15936610_SNP [dm6]	G	A	1.852e^-4	0.949	INTRON beat-Ib
2L	15018888	2L_15018888_SNP [dm3] 2L_15018888_SNP [dm6]	T	A	1.856e^-4	0.949	INTRON GABA-B-R1
X	22295214	X_22295214_SNP [dm3] X_22893378_SNP [dm6]	A	G	1.872e^-4	0.949	INTERGENIC
X	6494036	X_6494036_SNP [dm3] X_6600003_SNP [dm6]	G	A	1.876e^-4	0.949	UPSTREAM pigs DOWNSTREAM APC7 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16529197	2R_16529197_SNP [dm3] 2R_20641692_SNP [dm6]	T	C	1.881e^-4	0.949	UPSTREAM CG11110 DOWNSTREAM CG33785 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21867095	3L_21867095_SNP [dm3] 3L_21873995_SNP [dm6]	T	C	1.882e^-4	0.949	INTRON mub
2L	18473063	2L_18473063_SNP [dm3] 2L_18473063_SNP [dm6]	T	A	1.888e^-4	0.949	UTR_3_PRIME CG10283 DOWNSTREAM let-7 & 1 other EXON let-7-C
3R	21801982	3R_21801982_SNP [dm3] 3R_25976260_SNP [dm6]	T	G	1.894e^-4	0.949	INTRON CG42261
3R	19571189	3R_19571189_SNP [dm3] 3R_23745467_SNP [dm6]	A	C	1.896e^-4	0.949	INTRON Hmgcr
3L	9231082	3L_9231082_SNP [dm3] 3L_9237982_SNP [dm6]	C	T	1.897e^-4	0.949	INTERGENIC
2L	11703908	2L_11703908_SNP [dm3] 2L_11703908_SNP [dm6]	C	T	1.900e^-4	0.949	INTERGENIC
3R	903209	3R_903209_SNP [dm3] 3R_5077487_SNP [dm6]	C	T	1.901e^-4	0.949	DOWNSTREAM corto INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
3R	20681103	3R_20681103_SNP [dm3] 3R_24855381_SNP [dm6]	G	T	1.901e^-4	0.949	NON_SYNONYMOUS_CODING HdacX DOWNSTREAM nct
3R	23241967	3R_23241967_SNP [dm3] 3R_27416245_SNP [dm6]	C	T	1.901e^-4	0.949	INTRON side
2R	12180238	2R_12180238_SNP [dm3] 2R_16292733_SNP [dm6]	C	T	1.902e^-4	0.949	DOWNSTREAM CG30100 & 1 other INTRON CG7747
2L	19376345	2L_19376345_SNP [dm3] 2L_19376345_SNP [dm6]	T	A	1.904e^-4	0.949	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	12180241	2R_12180241_SNP [dm3] 2R_16292736_SNP [dm6]	C	T	1.909e^-4	0.949	DOWNSTREAM CG30100 & 1 other INTRON CG7747
3L	7778803	3L_7778803_SNP [dm3] 3L_7785703_SNP [dm6]	C	T	1.924e^-4	0.949	INTRON CG32369
2L	12187032	2L_12187032_SNP [dm3] 2L_12187032_SNP [dm6]	A	T	1.930e^-4	0.949	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22416486	3L_22416486_SNP [dm3] 3L_22423386_SNP [dm6]	G	A	1.930e^-4	0.949	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23340364	3R_23340364_SNP [dm3] 3R_27514642_SNP [dm6]	T	G	1.931e^-4	0.949	INTERGENIC
3R	13839737	3R_13839737_DEL [dm3] 3R_18014015_DEL [dm6]	TATAC	T	1.934e^-4	0.949	UTR_3_PRIME cpo
2R	14662795	2R_14662795_SNP [dm3] 2R_18775290_SNP [dm6]	C	T	1.942e^-4	0.949	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	632820	3R_632820_SNP [dm3] 3R_4807098_SNP [dm6]	T	C	1.948e^-4	0.949	UPSTREAM ctrip INTRON ctrip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	15670192	X_15670192_SNP [dm3] X_15776159_SNP [dm6]	T	C	1.955e^-4	0.949	SYNONYMOUS_CODING CG43672	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12124711	2R_12124711_SNP [dm3] 2R_16237206_SNP [dm6]	A	G	1.957e^-4	0.949	SYNONYMOUS_CODING CG3687 DOWNSTREAM krimp	TF binding site mE1_TFBS_sens
3L	19680439	3L_19680439_SNP [dm3] 3L_19687339_SNP [dm6]	G	A	1.958e^-4	0.949	UTR_5_PRIME CG8765 UPSTREAM Gbeta76C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	7355676	2R_7355676_SNP [dm3] 2R_11468171_SNP [dm6]	T	C	1.964e^-4	0.949	INTERGENIC
X	22288260	X_22288260_SNP [dm3] X_22886424_SNP [dm6]	C	A	1.985e^-4	0.951	DOWNSTREAM CG42346 INTERGENIC	transposable element FlyBase
3R	20818799	3R_20818799_SNP [dm3] 3R_24993077_SNP [dm6]	C	T	1.993e^-4	0.951	INTRON tnc
3L	8869987	3L_8869987_SNP [dm3] 3L_8876887_SNP [dm6]	T	A	2.002e^-4	0.951	INTRON dally
3R	21184238	3R_21184238_SNP [dm3] 3R_25358516_SNP [dm6]	C	T	2.027e^-4	0.951	INTRON Fur1 & 1 other
3R	23547425	3R_23547425_SNP [dm3] 3R_27721703_SNP [dm6]	T	G	2.027e^-4	0.951	INTERGENIC
2R	3763244	2R_3763244_SNP [dm3] 2R_7875739_SNP [dm6]	A	G	2.036e^-4	0.951	INTRON Dgk
3L	10812279	3L_10812279_SNP [dm3] 3L_10819179_SNP [dm6]	G	A	2.039e^-4	0.951	INTERGENIC
3L	9353049	3L_9353049_SNP [dm3] 3L_9359949_SNP [dm6]	C	A	2.043e^-4	0.951	UTR_3_PRIME CG32039 UPSTREAM CG34455 DOWNSTREAM CG32039	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
2L	5689721	2L_5689721_SNP [dm3] 2L_5689721_SNP [dm6]	T	A	2.052e^-4	0.951	UPSTREAM CR44819 DOWNSTREAM CR44820 INTERGENIC
3L	20360808	3L_20360808_SNP [dm3] 3L_20367708_SNP [dm6]	T	C	2.060e^-4	0.951	SYNONYMOUS_CODING in UPSTREAM Toll-9	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9781647	3L_9781647_SNP [dm3] 3L_9788547_SNP [dm6]	G	A	2.062e^-4	0.951	UTR_3_PRIME Zasp67
2R	15511820	2R_15511820_SNP [dm3] 2R_19624315_SNP [dm6]	A	G	2.065e^-4	0.951	INTRON sm	TF binding site mE1_TFBS_cad
2L	8035786	2L_8035786_SNP [dm3] 2L_8035786_SNP [dm6]	T	A	2.066e^-4	0.951	INTRON CG7367 & 1 other
2L	15746134	2L_15746134_SNP [dm3] 2L_15746134_SNP [dm6]	G	C	2.068e^-4	0.951	UPSTREAM CR44974 INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	9932404	2L_9932404_SNP [dm3] 2L_9932404_SNP [dm6]	T	A	2.069e^-4	0.951	UTR_3_PRIME Cpr30F
3R	15611401	3R_15611401_DEL [dm3] 3R_19785679_DEL [dm6]	TT	T	2.071e^-4	0.951	DOWNSTREAM CG11453 INTERGENIC
2L	11704740	2L_11704740_SNP [dm3] 2L_11704740_SNP [dm6]	A	T	2.071e^-4	0.951	INTERGENIC
3L	21877398	3L_21877398_DEL [dm3] 3L_21884298_DEL [dm6]	GAACTG	G	2.078e^-4	0.951	DOWNSTREAM CR43878 INTRON mub
3R	17717617	3R_17717617_SNP [dm3] 3R_21891895_SNP [dm6]	G	A	2.078e^-4	0.951	INTRON CG6678	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21746764	3R_21746764_SNP [dm3] 3R_25921042_SNP [dm6]	A	G	2.083e^-4	0.951	UTR_3_PRIME CG42235 & 1 other
2R	12180270	2R_12180270_SNP [dm3] 2R_16292765_SNP [dm6]	T	C	2.093e^-4	0.951	DOWNSTREAM CG30100 & 1 other INTRON CG7747
2L	7595939	2L_7595939_SNP [dm3] 2L_7595939_SNP [dm6]	G	A	2.094e^-4	0.951	INTERGENIC
2R	1577560	2R_1577560_SNP [dm3] 2R_5690055_SNP [dm6]	C	T	2.098e^-4	0.951	INTRON scaf
2L	15403330	2L_15403330_SNP [dm3] 2L_15403330_SNP [dm6]	T	C	2.107e^-4	0.951	INTERGENIC
3R	22898735	3R_22898735_SNP [dm3] 3R_27073013_SNP [dm6]	A	G	2.109e^-4	0.951	INTERGENIC	TF binding site mE1_TFBS_cad
2L	13960794	2L_13960794_SNP [dm3] 2L_13960794_SNP [dm6]	T	C	2.114e^-4	0.951	INTRON NimA
X	13974165	X_13974165_SNP [dm3] X_14080132_SNP [dm6]	A	G	2.120e^-4	0.951	INTERGENIC
2L	9932405	2L_9932405_SNP [dm3] 2L_9932405_SNP [dm6]	C	T	2.126e^-4	0.951	UTR_3_PRIME Cpr30F
2R	14662721	2R_14662721_SNP [dm3] 2R_18775216_SNP [dm6]	T	A	2.126e^-4	0.951	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	15002658	2L_15002658_SNP [dm3] 2L_15002658_SNP [dm6]	C	G	2.146e^-4	0.951	INTERGENIC
3R	27179395	3R_27179395_SNP [dm3] 3R_31353673_SNP [dm6]	A	G	2.150e^-4	0.951	INTRON CG34347
3R	22087648	3R_22087648_SNP [dm3] 3R_26261926_SNP [dm6]	T	G	2.154e^-4	0.951	UPSTREAM Ald & 1 other DOWNSTREAM CR44321 INTERGENIC
X	17488937	X_17488937_SNP [dm3] X_17594904_SNP [dm6]	T	C	2.159e^-4	0.951	INTRON CG12991
2L	13862322	2L_13862322_SNP [dm3] 2L_13862322_SNP [dm6]	G	T	2.160e^-4	0.951	INTRON CenG1A	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
X	8016118	X_8016118_SNP [dm3] X_8122085_SNP [dm6]	T	C	2.167e^-4	0.951	UPSTREAM CG2260 INTRON cyr
2R	17423285	2R_17423285_SNP [dm3] 2R_21535780_SNP [dm6]	T	G	2.167e^-4	0.951	NON_SYNONYMOUS_CODING CG30286 UTR_3_PRIME CG30286 INTRON Egfr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	654375	3L_654375_SNP [dm3] 3L_654375_SNP [dm6]	G	A	2.177e^-4	0.951	UTR_5_PRIME Rev1 UPSTREAM MED30	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	26389955	3R_26389955_SNP [dm3] 3R_30564233_SNP [dm6]	C	T	2.178e^-4	0.951	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	26487929	3R_26487929_SNP [dm3] 3R_30662207_SNP [dm6]	T	C	2.186e^-4	0.951	INTERGENIC
2L	15503103	2L_15503103_SNP [dm3] 2L_15503103_SNP [dm6]	C	T	2.194e^-4	0.951	SYNONYMOUS_CODING lace	TF binding site mE1_TFBS_HSA
3L	4477524	3L_4477524_SNP [dm3] 3L_4477524_SNP [dm6]	C	T	2.215e^-4	0.951	INTERGENIC
2L	5689400	2L_5689400_SNP [dm3] 2L_5689400_SNP [dm6]	A	C	2.215e^-4	0.951	INTERGENIC
X	3035536	X_3035536_SNP [dm3] X_3141503_SNP [dm6]	T	C	2.218e^-4	0.951	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr mE1_TFBS_Trl
3L	23223468	3L_23223468_SNP [dm3] 3L_23230368_SNP [dm6]	A	T	2.224e^-4	0.951	INTRON nAChRalpha4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	16032969	2L_16032969_SNP [dm3] 2L_16032969_SNP [dm6]	T	A	2.227e^-4	0.951	INTRON beat-Ic	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	9230375	2L_9230375_SNP [dm3] 2L_9230375_SNP [dm6]	G	A	2.230e^-4	0.951	INTRON tai	TF binding site BDTNP1_TFBS_twi
X	12551463	X_12551463_SNP [dm3] X_12657430_SNP [dm6]	C	A	2.232e^-4	0.951	UTR_3_PRIME CkIalpha DOWNSTREAM CkIalpha
2L	8591820	2L_8591820_SNP [dm3] 2L_8591820_SNP [dm6]	C	T	2.233e^-4	0.951	UPSTREAM CR43855 INTRON Sema-1a & 1 other
3R	21801073	3R_21801073_SNP [dm3] 3R_25975351_SNP [dm6]	G	A	2.241e^-4	0.951	INTRON CG42261
2L	19376340	2L_19376340_SNP [dm3] 2L_19376340_SNP [dm6]	C	T	2.246e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	22057218	3R_22057218_SNP [dm3] 3R_26231496_SNP [dm6]	G	A	2.253e^-4	0.951	SYNONYMOUS_CODING CG12290	TF binding site mE1_TFBS_chinmo
X	4076189	X_4076189_DEL [dm3] X_4182156_DEL [dm6]	CC	C	2.254e^-4	0.951	INTRON Fas2
3L	21871478	3L_21871478_SNP [dm3] 3L_21878378_SNP [dm6]	A	G	2.256e^-4	0.951	INTRON mub	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	23043683	3L_23043683_SNP [dm3] 3L_23050583_SNP [dm6]	T	A	2.257e^-4	0.951	INTERGENIC	transposable element FlyBase
2L	1537445	2L_1537445_SNP [dm3] 2L_1537445_SNP [dm6]	A	C	2.261e^-4	0.951	INTERGENIC
2L	16152224	2L_16152224_SNP [dm3] 2L_16152224_SNP [dm6]	A	G	2.261e^-4	0.951	INTERGENIC
3R	425944	3R_425944_SNP [dm3] 3R_4600222_SNP [dm6]	C	T	2.261e^-4	0.951	UPSTREAM CR44317 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	23222130	3L_23222130_SNP [dm3] 3L_23229030_SNP [dm6]	C	T	2.262e^-4	0.951	INTRON nAChRalpha4
3R	15432152	3R_15432152_SNP [dm3] 3R_19606430_SNP [dm6]	G	T	2.272e^-4	0.951	UTR_3_PRIME CG7342 UPSTREAM CG17751
3R	19413538	3R_19413538_SNP [dm3] 3R_23587816_SNP [dm6]	G	T	2.272e^-4	0.951	NON_SYNONYMOUS_CODING CG10182
3R	24921188	3R_24921188_SNP [dm3] 3R_29095466_SNP [dm6]	G	A	2.282e^-4	0.953	INTRON CG11873 EXON CR45030
2L	14999425	2L_14999425_SNP [dm3] 2L_14999425_SNP [dm6]	A	T	2.299e^-4	0.953	INTERGENIC
2R	18187593	2R_18187593_SNP [dm3] 2R_22300088_SNP [dm6]	A	G	2.304e^-4	0.953	SYNONYMOUS_CODING wdp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8715042	2L_8715042_SNP [dm3] 2L_8715042_SNP [dm6]	C	A	2.312e^-4	0.953	UPSTREAM raw INTRON raw
2R	7362248	2R_7362248_SNP [dm3] 2R_11474743_SNP [dm6]	T	G	2.314e^-4	0.953	UPSTREAM inv INTRON inv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21771586	3R_21771586_SNP [dm3] 3R_25945864_SNP [dm6]	G	A	2.315e^-4	0.953	INTRON CCAP-R
X	15431207	X_15431207_SNP [dm3] X_15537174_SNP [dm6]	G	T	2.327e^-4	0.953	INTRON Ac13E
3R	25474423	3R_25474423_SNP [dm3] 3R_29648701_SNP [dm6]	A	G	2.331e^-4	0.953	INTRON Dop1R2
3L	7858872	3L_7858872_SNP [dm3] 3L_7865772_SNP [dm6]	A	G	2.332e^-4	0.953	INTRON Pdp1	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	1908418	3R_1908418_SNP [dm3] 3R_6082696_SNP [dm6]	G	A	2.332e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	974725	3R_974725_SNP [dm3] 3R_5149003_SNP [dm6]	A	C	2.333e^-4	0.953	INTERGENIC
3L	2340128	3L_2340128_SNP [dm3] 3L_2340128_SNP [dm6]	T	A	2.338e^-4	0.953	INTRON MsR1
2R	19964577	2R_19964577_SNP [dm3] 2R_24077054_SNP [dm6]	A	G	2.345e^-4	0.953	SPLICE_SITE_REGION Mlp60A INTRON Mlp60A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21359605	3R_21359605_SNP [dm3] 3R_25533883_SNP [dm6]	C	G	2.348e^-4	0.953	INTRON msi
2L	15746197	2L_15746197_SNP [dm3] 2L_15746197_SNP [dm6]	C	A	2.370e^-4	0.956	UPSTREAM CR44974 INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	14662742	2R_14662742_SNP [dm3] 2R_18775237_SNP [dm6]	A	C	2.373e^-4	0.956	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	687677	3R_687677_SNP [dm3] 3R_4861955_SNP [dm6]	T	C	2.373e^-4	0.956	INTRON opa	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17809053	2L_17809053_SNP [dm3] 2L_17809053_SNP [dm6]	G	A	2.380e^-4	0.956	INTRON CadN2
3R	882417	3R_882417_INS [dm3] 3R_5056695_INS [dm6]	G	GCTAAG	2.388e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7379579	3R_7379579_SNP [dm3] 3R_11553857_SNP [dm6]	C	T	2.390e^-4	0.956	UPSTREAM CG14708 INTERGENIC
X	21924473	X_21924473_SNP [dm3] X_22522637_SNP [dm6]	G	T	2.412e^-4	0.956	INTRON CG17600
X	12758961	X_12758961_SNP [dm3] X_12864928_SNP [dm6]	C	T	2.413e^-4	0.956	INTRON Pde9
2R	10592278	2R_10592278_SNP [dm3] 2R_14704773_SNP [dm6]	G	A	2.416e^-4	0.956	INTRON mspo
3L	22654639	3L_22654639_SNP [dm3] 3L_22661539_SNP [dm6]	T	A	2.426e^-4	0.956	INTERGENIC
3R	23340356	3R_23340356_SNP [dm3] 3R_27514634_SNP [dm6]	T	C	2.429e^-4	0.956	INTERGENIC
2L	13862310	2L_13862310_DEL [dm3] 2L_13862310_DEL [dm6]	ATCCAACTTAA...	A	2.429e^-4	0.956	INTRON CenG1A	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
2L	11704728	2L_11704728_SNP [dm3] 2L_11704728_SNP [dm6]	A	T	2.431e^-4	0.956	INTERGENIC
2L	13862377	2L_13862377_SNP [dm3] 2L_13862377_SNP [dm6]	A	T	2.438e^-4	0.956	INTRON CenG1A	TF binding site BDTNP1_TFBS_da mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
X	4076183	X_4076183_SNP [dm3] X_4182150_SNP [dm6]	T	A	2.449e^-4	0.956	INTRON Fas2
2R	14627436	2R_14627436_SNP [dm3] 2R_18739931_SNP [dm6]	T	C	2.450e^-4	0.956	DOWNSTREAM CG33998 INTRON Hs3st-A EXON CR30121
3L	16554493	3L_16554493_SNP [dm3] 3L_16561393_SNP [dm6]	T	C	2.452e^-4	0.956	INTERGENIC
2R	14662730	2R_14662730_SNP [dm3] 2R_18775225_SNP [dm6]	C	G	2.461e^-4	0.956	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	20673939	3R_20673939_SNP [dm3] 3R_24848217_SNP [dm6]	A	T	2.462e^-4	0.956	NON_SYNONYMOUS_CODING Esp SPLICE_SITE_REGION Esp
2L	9230261	2L_9230261_SNP [dm3] 2L_9230261_SNP [dm6]	A	C	2.467e^-4	0.956	INTRON tai	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14475689	2R_14475689_SNP [dm3] 2R_18588184_SNP [dm6]	A	T	2.468e^-4	0.956	INTRON GEFmeso
2R	17902149	2R_17902149_SNP [dm3] 2R_22014644_SNP [dm6]	C	T	2.471e^-4	0.956	INTRON CG34370
3L	21974449	3L_21974449_SNP [dm3] 3L_21981349_SNP [dm6]	A	G	2.472e^-4	0.956	INTRON CG7470	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4831094	2L_4831094_SNP [dm3] 2L_4831094_SNP [dm6]	A	C	2.487e^-4	0.956	SYNONYMOUS_CODING Ir25a UPSTREAM CG2976	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	15505492	2L_15505492_SNP [dm3] 2L_15505492_SNP [dm6]	C	A	2.489e^-4	0.956	DOWNSTREAM lace INTERGENIC
3R	1337261	3R_1337261_SNP [dm3] 3R_5511539_SNP [dm6]	G	C	2.492e^-4	0.956	SYNONYMOUS_CODING Nmdar1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14512868	3L_14512868_SNP [dm3] 3L_14519768_SNP [dm6]	A	G	2.500e^-4	0.956	UTR_3_PRIME CG4613 DOWNSTREAM CG4613 INTRON bbg
2L	16152206	2L_16152206_SNP [dm3] 2L_16152206_SNP [dm6]	A	T	2.505e^-4	0.956	INTERGENIC
3R	14303523	3R_14303523_SNP [dm3] 3R_18477801_SNP [dm6]	G	T	2.516e^-4	0.956	INTRON fru
2R	14662799	2R_14662799_SNP [dm3] 2R_18775294_SNP [dm6]	C	A	2.537e^-4	0.956	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	781266	3R_781266_SNP [dm3] 3R_4955544_SNP [dm6]	C	A	2.542e^-4	0.956	UPSTREAM CG14661 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16151058	2L_16151058_SNP [dm3] 2L_16151058_SNP [dm6]	T	A	2.543e^-4	0.956	INTERGENIC
3R	24925419	3R_24925419_SNP [dm3] 3R_29099697_SNP [dm6]	A	T	2.544e^-4	0.956	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10292462	2L_10292462_SNP [dm3] 2L_10292462_SNP [dm6]	A	G	2.551e^-4	0.956	UPSTREAM CG5604 DOWNSTREAM Hand INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	14627435	2R_14627435_SNP [dm3] 2R_18739930_SNP [dm6]	G	A	2.558e^-4	0.956	DOWNSTREAM CG33998 INTRON Hs3st-A EXON CR30121
3R	21359879	3R_21359879_SNP [dm3] 3R_25534157_SNP [dm6]	A	G	2.564e^-4	0.956	INTRON msi
2R	10986748	2R_10986748_SNP [dm3] 2R_15099243_SNP [dm6]	G	C	2.577e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	14392500	2L_14392500_SNP [dm3] 2L_14392500_SNP [dm6]	C	T	2.579e^-4	0.956	NON_SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	15500734	2L_15500734_SNP [dm3] 2L_15500734_SNP [dm6]	A	G	2.580e^-4	0.956	INTRON lace	TF binding site BDTNP1_TFBS_dl
2L	13053897	2L_13053897_SNP [dm3] 2L_13053897_SNP [dm6]	A	T	2.581e^-4	0.956	INTRON CG9932
3R	21189303	3R_21189303_SNP [dm3] 3R_25363581_SNP [dm6]	A	G	2.594e^-4	0.956	INTRON Fur1
2L	11391909	2L_11391909_SNP [dm3] 2L_11391909_SNP [dm6]	T	G	2.597e^-4	0.956	INTRON CR43681	regulatory region REDfly_CRMs
2L	1855024	2L_1855024_SNP [dm3] 2L_1855024_SNP [dm6]	G	T	2.611e^-4	0.956	INTRON wry	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21359900	3R_21359900_SNP [dm3] 3R_25534178_SNP [dm6]	T	C	2.635e^-4	0.956	INTRON msi
3R	9148837	3R_9148837_SNP [dm3] 3R_13323115_SNP [dm6]	G	T	2.638e^-4	0.956	INTERGENIC
2L	19183532	2L_19183532_SNP [dm3] 2L_19183532_SNP [dm6]	T	A	2.659e^-4	0.956	UPSTREAM CG42688 DOWNSTREAM gammaTub37C EXON CR17567
2L	1284938	2L_1284938_SNP [dm3] 2L_1284938_SNP [dm6]	A	T	2.664e^-4	0.956	INTRON robo3
2L	15501304	2L_15501304_SNP [dm3] 2L_15501304_SNP [dm6]	C	A	2.666e^-4	0.956	INTRON lace
3R	21771076	3R_21771076_SNP [dm3] 3R_25945354_SNP [dm6]	T	C	2.669e^-4	0.956	INTRON CCAP-R
2L	11705163	2L_11705163_SNP [dm3] 2L_11705163_SNP [dm6]	C	A	2.682e^-4	0.956	INTERGENIC
X	21924471	X_21924471_SNP [dm3] X_22522635_SNP [dm6]	T	C	2.682e^-4	0.956	INTRON CG17600
3R	24921801	3R_24921801_SNP [dm3] 3R_29096079_SNP [dm6]	C	A	2.682e^-4	0.956	INTRON CG11873 EXON CR45030
3R	19370429	3R_19370429_SNP [dm3] 3R_23544707_SNP [dm6]	C	T	2.684e^-4	0.956	INTERGENIC
3L	21617909	3L_21617909_SNP [dm3] 3L_21624809_SNP [dm6]	T	G	2.691e^-4	0.956	UPSTREAM CG11306 INTRON CG7166
2R	9141425	2R_9141425_SNP [dm3] 2R_13253920_SNP [dm6]	C	A	2.705e^-4	0.956	SYNONYMOUS_CODING CG4714 DOWNSTREAM CR44343	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	18022352	3L_18022352_SNP [dm3] 3L_18029252_SNP [dm6]	G	T	2.714e^-4	0.956	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13041757	2L_13041757_SNP [dm3] 2L_13041757_SNP [dm6]	G	T	2.717e^-4	0.956	INTRON CG9932
3L	22603959	3L_22603959_SNP [dm3] 3L_22610859_SNP [dm6]	T	C	2.731e^-4	0.956	INTRON CG14459
3R	7397053	3R_7397053_SNP [dm3] 3R_11571331_SNP [dm6]	G	T	2.731e^-4	0.956	INTRON Mrp4	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3445131	X_3445131_SNP [dm3] X_3551098_SNP [dm6]	A	T	2.732e^-4	0.956	INTRON CG32791
2L	15501427	2L_15501427_SNP [dm3] 2L_15501427_SNP [dm6]	T	C	2.752e^-4	0.956	INTRON lace
2L	15014674	2L_15014674_DEL [dm3] 2L_15014674_DEL [dm6]	CTGTGCCTGCAAATGTTTTA...	C	2.758e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12750296	3L_12750296_SNP [dm3] 3L_12757196_SNP [dm6]	C	G	2.758e^-4	0.956	SYNONYMOUS_CODING CG32113
3R	23340387	3R_23340387_SNP [dm3] 3R_27514665_SNP [dm6]	A	C	2.774e^-4	0.956	INTERGENIC
2L	15745496	2L_15745496_SNP [dm3] 2L_15745496_SNP [dm6]	G	C	2.781e^-4	0.956	UTR_5_PRIME CycE UPSTREAM CR44974 INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	6844574	2R_6844574_SNP [dm3] 2R_10957069_SNP [dm6]	G	A	2.790e^-4	0.956	INTERGENIC
3L	527285	3L_527285_SNP [dm3] 3L_527285_SNP [dm6]	G	T	2.790e^-4	0.956	UPSTREAM CR45117 INTRON klar EXON CR45118
3R	26112435	3R_26112435_SNP [dm3] 3R_30286713_SNP [dm6]	G	C	2.796e^-4	0.956	INTRON hdc	TF binding site BDTNP1_TFBS_dl
X	21915272	X_21915272_INS [dm3] X_22513436_INS [dm6]	T	TATAAACTA	2.801e^-4	0.956	INTERGENIC	transposable element FlyBase
3L	3523813	3L_3523813_SNP [dm3] 3L_3523813_SNP [dm6]	G	A	2.803e^-4	0.956	UPSTREAM CR45043 INTRON Eip63E
2R	15510100	2R_15510100_SNP [dm3] 2R_19622595_SNP [dm6]	T	C	2.807e^-4	0.956	INTRON sm
2L	11707195	2L_11707195_SNP [dm3] 2L_11707195_SNP [dm6]	G	A	2.811e^-4	0.956	INTERGENIC
2L	18510249	2L_18510249_SNP [dm3] 2L_18510249_SNP [dm6]	C	A	2.816e^-4	0.956	INTRON CG10178
2L	3813572	2L_3813572_SNP [dm3] 2L_3813572_SNP [dm6]	A	G	2.816e^-4	0.956	UPSTREAM CG3407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
X	9135450	X_9135450_SNP [dm3] X_9241417_SNP [dm6]	G	A	2.831e^-4	0.956	SYNONYMOUS_CODING mxc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17008397	2R_17008397_SNP [dm3] 2R_21120892_SNP [dm6]	G	A	2.854e^-4	0.956	DOWNSTREAM CG9394 INTRON ktub
3R	23340369	3R_23340369_SNP [dm3] 3R_27514647_SNP [dm6]	A	C	2.855e^-4	0.956	INTERGENIC
X	9339800	X_9339800_INS [dm3] X_9445767_INS [dm6]	G	GCAAACTG	2.868e^-4	0.956	DOWNSTREAM CG44815 INTRON mgl
2R	11839395	2R_11839395_DEL [dm3] 2R_15951890_DEL [dm6]	CACAAACTACTGGTTACTTT...	C	2.874e^-4	0.956	SPLICE_SITE_DONOR Strn-Mlck SPLICE_SITE_REGION Strn-Mlck UTR_5_PRIME Strn-Mlck UPSTREAM Strn-Mlck INTRON Strn-Mlck
2L	15941122	2L_15941122_SNP [dm3] 2L_15941122_SNP [dm6]	G	T	2.883e^-4	0.956	UPSTREAM CG12448 INTRON beat-Ib
2L	16823182	2L_16823182_SNP [dm3] 2L_16823182_SNP [dm6]	T	A	2.884e^-4	0.956	SYNONYMOUS_CODING Cas INTRON mdy	TF binding site mE1_TFBS_HSA
2L	9907242	2L_9907242_SNP [dm3] 2L_9907242_SNP [dm6]	A	G	2.884e^-4	0.956	UTR_5_PRIME CG13124	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23445742	3L_23445742_SNP [dm3] 3L_23452642_SNP [dm6]	C	A	2.889e^-4	0.956	INTERGENIC
3R	9169661	3R_9169661_SNP [dm3] 3R_13343939_SNP [dm6]	A	T	2.895e^-4	0.956	INTRON PK2-R1
X	7680406	X_7680406_SNP [dm3] X_7786373_SNP [dm6]	G	T	2.895e^-4	0.956	INTERGENIC
2L	15793219	2L_15793219_SNP [dm3] 2L_15793219_SNP [dm6]	G	A	2.896e^-4	0.956	INTERGENIC
2R	18187200	2R_18187200_SNP [dm3] 2R_22299695_SNP [dm6]	A	G	2.897e^-4	0.956	SYNONYMOUS_CODING wdp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1549273	2L_1549273_SNP [dm3] 2L_1549273_SNP [dm6]	A	G	2.909e^-4	0.956	INTERGENIC
3R	26052533	3R_26052533_SNP [dm3] 3R_30226811_SNP [dm6]	C	T	2.910e^-4	0.956	INTERGENIC
3L	10616333	3L_10616333_SNP [dm3] 3L_10623233_SNP [dm6]	C	A	2.918e^-4	0.956	NON_SYNONYMOUS_CODING CG42521
2R	18187176	2R_18187176_SNP [dm3] 2R_22299671_SNP [dm6]	A	C	2.938e^-4	0.956	SYNONYMOUS_CODING wdp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21767643	3R_21767643_SNP [dm3] 3R_25941921_SNP [dm6]	C	T	2.938e^-4	0.956	INTRON CCAP-R
X	21310464	X_21310464_SNP [dm3] X_21439437_SNP [dm6]	G	A	2.940e^-4	0.956	INTRON CG42343
2R	11798822	2R_11798822_SNP [dm3] 2R_15911317_SNP [dm6]	C	T	2.941e^-4	0.956	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9604837	3R_9604837_SNP [dm3] 3R_13779115_SNP [dm6]	T	C	2.942e^-4	0.956	UTR_3_PRIME CG9297 UPSTREAM CG9288 & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	6922590	3L_6922590_SNP [dm3] 3L_6929490_SNP [dm6]	T	G	2.949e^-4	0.956	INTERGENIC
3L	23059840	3L_23059840_SNP [dm3] 3L_23066740_SNP [dm6]	C	T	2.973e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_twi transposable element FlyBase
3L	8774531	3L_8774531_SNP [dm3] 3L_8781431_SNP [dm6]	A	C	2.976e^-4	0.956	INTRON Fhos
2L	5765641	2L_5765641_SNP [dm3] 2L_5765641_SNP [dm6]	G	A	2.997e^-4	0.956	INTRON obst-E
3R	27112394	3R_27112394_SNP [dm3] 3R_31286672_SNP [dm6]	C	G	3.002e^-4	0.956	INTERGENIC
X	17488818	X_17488818_SNP [dm3] X_17594785_SNP [dm6]	A	G	3.011e^-4	0.956	INTRON CG12991
3L	22681656	3L_22681656_SNP [dm3] 3L_22688556_SNP [dm6]	A	G	3.016e^-4	0.956	DOWNSTREAM CG14456 INTERGENIC
3R	19818888	3R_19818888_SNP [dm3] 3R_23993166_SNP [dm6]	G	A	3.017e^-4	0.956	UPSTREAM Rab7 & 1 other INTRON Rab7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	14662738	2R_14662738_SNP [dm3] 2R_18775233_SNP [dm6]	C	T	3.025e^-4	0.956	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9634840	2L_9634840_SNP [dm3] 2L_9634840_SNP [dm6]	C	A	3.025e^-4	0.956	INTRON Apoltp
2L	18473703	2L_18473703_SNP [dm3] 2L_18473703_SNP [dm6]	G	C	3.041e^-4	0.956	DOWNSTREAM let-7-C INTRON CG10283
3R	19818893	3R_19818893_SNP [dm3] 3R_23993171_SNP [dm6]	A	G	3.051e^-4	0.956	UPSTREAM Rab7 & 1 other INTRON Rab7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	15937948	2L_15937948_SNP [dm3] 2L_15937948_SNP [dm6]	C	T	3.068e^-4	0.956	INTRON beat-Ib
3R	21359932	3R_21359932_SNP [dm3] 3R_25534210_SNP [dm6]	T	C	3.078e^-4	0.956	INTRON msi
3R	21743200	3R_21743200_SNP [dm3] 3R_25917478_SNP [dm6]	T	C	3.080e^-4	0.956	SYNONYMOUS_CODING CG42235 DOWNSTREAM CG42235 INTRON CG42235
3L	19963175	3L_19963175_SNP [dm3] 3L_19970075_SNP [dm6]	C	G	3.084e^-4	0.956	INTRON Ac76E
2L	6747695	2L_6747695_SNP [dm3] 2L_6747695_SNP [dm6]	C	T	3.092e^-4	0.956	NON_SYNONYMOUS_CODING CG44271 INTRON CG11221
3R	22056924	3R_22056924_SNP [dm3] 3R_26231202_SNP [dm6]	C	T	3.113e^-4	0.956	SYNONYMOUS_CODING CG12290	TF binding site mE1_TFBS_chinmo
3L	11673593	3L_11673593_SNP [dm3] 3L_11680493_SNP [dm6]	T	C	3.114e^-4	0.956	UPSTREAM CG32085 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4701752	2L_4701752_SNP [dm3] 2L_4701752_SNP [dm6]	C	G	3.115e^-4	0.956	UPSTREAM Taf12L INTRON CG34351
3R	20232466	3R_20232466_SNP [dm3] 3R_24406744_SNP [dm6]	T	A	3.129e^-4	0.956	INTRON nAChRalpha1
3R	20232351	3R_20232351_SNP [dm3] 3R_24406629_SNP [dm6]	A	T	3.131e^-4	0.956	INTRON nAChRalpha1
2L	10351988	2L_10351988_SNP [dm3] 2L_10351988_SNP [dm6]	G	C	3.132e^-4	0.956	SYNONYMOUS_CODING CG34367
2R	11037735	2R_11037735_SNP [dm3] 2R_15150230_SNP [dm6]	A	T	3.141e^-4	0.956	DOWNSTREAM CG7544 INTERGENIC
3L	16967865	3L_16967865_SNP [dm3] 3L_16974765_SNP [dm6]	G	T	3.149e^-4	0.956	INTRON Exn	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	7062865	X_7062865_SNP [dm3] X_7168832_SNP [dm6]	T	C	3.152e^-4	0.956	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7214127	X_7214127_SNP [dm3] X_7320094_SNP [dm6]	A	C	3.155e^-4	0.956	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	14713690	2L_14713690_SNP [dm3] 2L_14713690_SNP [dm6]	T	C	3.161e^-4	0.956	UPSTREAM CG34165 DOWNSTREAM CG15282 INTERGENIC
3R	21752342	3R_21752342_SNP [dm3] 3R_25926620_SNP [dm6]	A	T	3.161e^-4	0.956	INTRON CCAP-R
2L	13862355	2L_13862355_SNP [dm3] 2L_13862355_SNP [dm6]	T	C	3.168e^-4	0.956	INTRON CenG1A	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
3L	906491	3L_906491_SNP [dm3] 3L_906491_SNP [dm6]	T	C	3.169e^-4	0.956	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9875277	2R_9875277_SNP [dm3] 2R_13987772_SNP [dm6]	A	G	3.173e^-4	0.956	UTR_3_PRIME RN-tre INTRON RN-tre
2L	15195535	2L_15195535_INS [dm3] 2L_15195535_INS [dm6]	T	CC	3.176e^-4	0.956	INTRON CG4168
2R	1417959	2R_1417959_SNP [dm3] 2R_5530454_SNP [dm6]	G	C	3.180e^-4	0.956	INTRON CG30438	transposable element FlyBase
2L	11880193	2L_11880193_SNP [dm3] 2L_11880193_SNP [dm6]	T	A	3.186e^-4	0.956	INTRON Pde1c
X	4983665	X_4983665_DEL [dm3] X_5089632_DEL [dm6]	AT	A	3.187e^-4	0.956	UTR_5_PRIME rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14363205	2R_14363205_SNP [dm3] 2R_18475700_SNP [dm6]	C	T	3.194e^-4	0.956	INTRON CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19231638	X_19231638_SNP [dm3] X_19337605_SNP [dm6]	A	C	3.195e^-4	0.956	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2R	9738887	2R_9738887_SNP [dm3] 2R_13851382_SNP [dm6]	C	T	3.203e^-4	0.956	NON_SYNONYMOUS_CODING CG30485	TF binding site mE1_TFBS_HSA
3L	2757715	3L_2757715_SNP [dm3] 3L_2757715_SNP [dm6]	A	G	3.205e^-4	0.956	INTRON Mrtf
3L	22675263	3L_22675263_SNP [dm3] 3L_22682163_SNP [dm6]	A	T	3.210e^-4	0.956	INTERGENIC
2R	9784038	2R_9784038_DEL [dm3] 2R_13896533_DEL [dm6]	CACC	C	3.212e^-4	0.956	INTRON shot
2L	18889257	2L_18889257_SNP [dm3] 2L_18889257_SNP [dm6]	T	C	3.215e^-4	0.956	INTERGENIC	TF binding site mE1_TFBS_cad
2L	13463519	2L_13463519_SNP [dm3] 2L_13463519_SNP [dm6]	C	A	3.216e^-4	0.956	INTRON CG42784
3R	26889786	3R_26889786_SNP [dm3] 3R_31064064_SNP [dm6]	A	T	3.220e^-4	0.956	INTERGENIC	TF binding site mE1_TFBS_cad
3L	21836470	3L_21836470_SNP [dm3] 3L_21843370_SNP [dm6]	C	G	3.235e^-4	0.956	UPSTREAM CG14563 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14202746	2R_14202746_SNP [dm3] 2R_18315241_SNP [dm6]	A	G	3.237e^-4	0.956	INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	11575274	3R_11575274_SNP [dm3] 3R_15749552_SNP [dm6]	T	A	3.242e^-4	0.956	INTERGENIC
2L	3813689	2L_3813689_SNP [dm3] 2L_3813689_SNP [dm6]	C	T	3.244e^-4	0.956	UPSTREAM CG3407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9918560	2R_9918560_SNP [dm3] 2R_14031055_SNP [dm6]	A	T	3.250e^-4	0.956	UPSTREAM mam INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	7770777	X_7770777_SNP [dm3] X_7876744_SNP [dm6]	C	G	3.253e^-4	0.956	NON_SYNONYMOUS_CODING Ir7c DOWNSTREAM Ir7d
X	7063424	X_7063424_SNP [dm3] X_7169391_SNP [dm6]	C	T	3.267e^-4	0.956	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11545373	3L_11545373_SNP [dm3] 3L_11552273_SNP [dm6]	A	G	3.273e^-4	0.956	DOWNSTREAM mir-4968 INTRON Mob2	TF binding site BDTNP1_TFBS_dl
2L	7402952	2L_7402952_SNP [dm3] 2L_7402952_SNP [dm6]	G	A	3.276e^-4	0.956	UTR_5_PRIME CG5171 UPSTREAM CG5171 INTRON CG5171
3L	22854728	3L_22854728_SNP [dm3] 3L_22861628_SNP [dm6]	G	T	3.277e^-4	0.956	DOWNSTREAM CG13239 INTERGENIC
2L	13829744	2L_13829744_SNP [dm3] 2L_13829744_SNP [dm6]	T	C	3.283e^-4	0.956	UPSTREAM Orc5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	3531378	2R_3531378_SNP [dm3] 2R_7643873_SNP [dm6]	C	T	3.288e^-4	0.956	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
X	1557965	X_1557965_SNP [dm3] X_1663932_SNP [dm6]	T	A	3.292e^-4	0.956	UTR_3_PRIME br INTRON Mur2B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26389895	3R_26389895_SNP [dm3] 3R_30564173_SNP [dm6]	T	A	3.306e^-4	0.956	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	12143713	2R_12143713_SNP [dm3] 2R_16256208_SNP [dm6]	A	G	3.307e^-4	0.956	INTRON CngA
3R	9980225	3R_9980225_SNP [dm3] 3R_14154503_SNP [dm6]	A	G	3.311e^-4	0.956	UPSTREAM CG9722 & 1 other DOWNSTREAM CG31533 INTERGENIC
3R	26138375	3R_26138375_SNP [dm3] 3R_30312653_SNP [dm6]	G	A	3.314e^-4	0.956	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	18889260	2L_18889260_SNP [dm3] 2L_18889260_SNP [dm6]	T	A	3.315e^-4	0.956	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9077775	2L_9077775_SNP [dm3] 2L_9077775_SNP [dm6]	G	A	3.318e^-4	0.956	SYNONYMOUS_CODING CG12439
3R	19008233	3R_19008233_SNP [dm3] 3R_23182511_SNP [dm6]	T	C	3.328e^-4	0.956	UPSTREAM Irk1 INTRON Irk1
3R	13093836	3R_13093836_SNP [dm3] 3R_17268114_SNP [dm6]	G	T	3.331e^-4	0.956	INTERGENIC
3R	9162319	3R_9162319_SNP [dm3] 3R_13336597_SNP [dm6]	G	T	3.335e^-4	0.956	INTERGENIC
X	14047547	X_14047547_SNP [dm3] X_14153514_SNP [dm6]	C	T	3.339e^-4	0.956	INTERGENIC
2L	10534246	2L_10534246_SNP [dm3] 2L_10534246_SNP [dm6]	C	A	3.340e^-4	0.956	UPSTREAM CG18302 DOWNSTREAM CG18301 INTERGENIC
2L	2163510	2L_2163510_SNP [dm3] 2L_2163510_SNP [dm6]	C	A	3.343e^-4	0.956	INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
3L	15692124	3L_15692124_SNP [dm3] 3L_15699024_SNP [dm6]	A	T	3.345e^-4	0.956	INTRON comm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2L	18242410	2L_18242410_SNP [dm3] 2L_18242410_SNP [dm6]	G	C	3.346e^-4	0.956	INTRON CG42750
2L	3813717	2L_3813717_SNP [dm3] 2L_3813717_SNP [dm6]	T	G	3.347e^-4	0.956	UPSTREAM CG3407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3813719	2L_3813719_SNP [dm3] 2L_3813719_SNP [dm6]	T	C	3.347e^-4	0.956	UPSTREAM CG3407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3813722	2L_3813722_SNP [dm3] 2L_3813722_SNP [dm6]	T	A	3.347e^-4	0.956	UPSTREAM CG3407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3813756	2L_3813756_SNP [dm3] 2L_3813756_SNP [dm6]	A	G	3.347e^-4	0.956	UPSTREAM CG3407 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19129080	3L_19129080_SNP [dm3] 3L_19135980_SNP [dm6]	A	C	3.351e^-4	0.956	INTRON CG14082
3R	19370435	3R_19370435_SNP [dm3] 3R_23544713_SNP [dm6]	A	G	3.355e^-4	0.956	INTERGENIC
3R	27866874	3R_27866874_SNP [dm3] 3R_32041152_SNP [dm6]	G	A	3.361e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	12758989	X_12758989_DEL [dm3] X_12864956_DEL [dm6]	AGTCCA	A	3.365e^-4	0.956	INTRON Pde9
3L	15782370	3L_15782370_SNP [dm3] 3L_15789270_SNP [dm6]	A	G	3.371e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	8715378	2L_8715378_SNP [dm3] 2L_8715378_SNP [dm6]	G	T	3.397e^-4	0.956	UPSTREAM raw INTRON raw
2R	7363614	2R_7363614_SNP [dm3] 2R_11476109_SNP [dm6]	G	T	3.404e^-4	0.956	NON_SYNONYMOUS_CODING inv	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25217150	3R_25217150_SNP [dm3] 3R_29391428_SNP [dm6]	A	G	3.409e^-4	0.956	INTRON Ptp99A
X	2996995	X_2996995_SNP [dm3] X_3102962_SNP [dm6]	A	G	3.409e^-4	0.956	INTRON kirre
2R	15688867	2R_15688867_SNP [dm3] 2R_19801362_SNP [dm6]	C	A	3.416e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12887481	2L_12887481_SNP [dm3] 2L_12887481_SNP [dm6]	A	G	3.417e^-4	0.956	INTERGENIC
2R	3521026	2R_3521026_SNP [dm3] 2R_7633521_SNP [dm6]	A	G	3.429e^-4	0.956	UTR_3_PRIME CG43341 INTRON CG43340 EXON CR45131
2L	17879251	2L_17879251_SNP [dm3] 2L_17879251_SNP [dm6]	C	T	3.437e^-4	0.956	INTERGENIC
2L	8715201	2L_8715201_MNP [dm3] 2L_8715201_MNP [dm6]	AAA	TTT	3.438e^-4	0.956	UPSTREAM raw INTRON raw
2L	10291845	2L_10291845_DEL [dm3] 2L_10291845_DEL [dm6]	AA	A	3.441e^-4	0.956	DOWNSTREAM Hand INTRON CG5604	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	21728250	3R_21728250_SNP [dm3] 3R_25902528_SNP [dm6]	A	G	3.443e^-4	0.956	UPSTREAM CG31089 DOWNSTREAM CR43259 & 1 other INTERGENIC
2L	1477692	2L_1477692_SNP [dm3] 2L_1477692_SNP [dm6]	T	C	3.448e^-4	0.956	INTERGENIC
2L	1741002	2L_1741002_SNP [dm3] 2L_1741002_SNP [dm6]	G	T	3.449e^-4	0.956	INTRON CG17646
3L	12306184	3L_12306184_SNP [dm3] 3L_12313084_SNP [dm6]	A	G	3.452e^-4	0.956	INTERGENIC
2L	2642322	2L_2642322_SNP [dm3] 2L_2642322_SNP [dm6]	C	T	3.452e^-4	0.956	INTERGENIC
2L	1393748	2L_1393748_SNP [dm3] 2L_1393748_SNP [dm6]	A	T	3.464e^-4	0.956	INTRON lea
2L	16152193	2L_16152193_SNP [dm3] 2L_16152193_SNP [dm6]	C	A	3.473e^-4	0.956	INTERGENIC
2L	13694246	2L_13694246_SNP [dm3] 2L_13694246_SNP [dm6]	T	A	3.480e^-4	0.956	INTRON CG31814
3L	15809001	3L_15809001_SNP [dm3] 3L_15815901_SNP [dm6]	C	T	3.481e^-4	0.956	INTRON fwe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12413898	2R_12413898_SNP [dm3] 2R_16526393_SNP [dm6]	T	G	3.489e^-4	0.956	INTRON Sema-2a
3R	17717619	3R_17717619_SNP [dm3] 3R_21891897_SNP [dm6]	A	C	3.506e^-4	0.956	INTRON CG6678	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2023631	3L_2023631_INS [dm3] 3L_2023631_INS [dm6]	A	AAATTCA	3.507e^-4	0.956	UPSTREAM CG42356 INTERGENIC
3R	23340424	3R_23340424_SNP [dm3] 3R_27514702_SNP [dm6]	G	A	3.512e^-4	0.956	INTERGENIC
2R	13493456	2R_13493456_SNP [dm3] 2R_17605951_SNP [dm6]	T	A	3.517e^-4	0.956	INTRON CG10936
X	13974154	X_13974154_SNP [dm3] X_14080121_SNP [dm6]	T	A	3.526e^-4	0.956	INTERGENIC
3R	1883557	3R_1883557_SNP [dm3] 3R_6057835_SNP [dm6]	T	A	3.526e^-4	0.956	UPSTREAM CG15580 INTERGENIC
3R	21847633	3R_21847633_SNP [dm3] 3R_26021911_SNP [dm6]	T	A	3.532e^-4	0.956	UTR_5_PRIME E_spl_m3-HLH UPSTREAM CR43644	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10634430	X_10634430_SNP [dm3] X_10740397_SNP [dm6]	T	A	3.551e^-4	0.956	INTRON CG32676	TF binding site BDTNP1_TFBS_dl
3L	4476488	3L_4476488_SNP [dm3] 3L_4476488_SNP [dm6]	G	T	3.555e^-4	0.956	INTERGENIC
2L	13445472	2L_13445472_SNP [dm3] 2L_13445472_SNP [dm6]	T	C	3.570e^-4	0.956	INTRON CG42784 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
X	5968511	X_5968511_SNP [dm3] X_6074478_SNP [dm6]	G	C	3.572e^-4	0.956	INTRON Tsp5D
3L	21853606	3L_21853606_SNP [dm3] 3L_21860506_SNP [dm6]	G	A	3.581e^-4	0.956	INTRON mub	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12638732	2L_12638732_SNP [dm3] 2L_12638732_SNP [dm6]	T	C	3.582e^-4	0.956	INTRON Ref2
2L	18508730	2L_18508730_SNP [dm3] 2L_18508730_SNP [dm6]	T	C	3.595e^-4	0.956	UPSTREAM CG10178 INTERGENIC
3R	19422826	3R_19422826_SNP [dm3] 3R_23597104_SNP [dm6]	G	A	3.596e^-4	0.956	SYNONYMOUS_CODING CG10183 UPSTREAM CG16723
2R	17548040	2R_17548040_SNP [dm3] 2R_21660535_SNP [dm6]	T	G	3.597e^-4	0.956	UPSTREAM Rae1 DOWNSTREAM pirk INTERGENIC
3L	21907477	3L_21907477_SNP [dm3] 3L_21914377_SNP [dm6]	C	G	3.602e^-4	0.956	INTRON mub	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16151364	2L_16151364_SNP [dm3] 2L_16151364_SNP [dm6]	G	A	3.604e^-4	0.956	INTERGENIC
2L	12887485	2L_12887485_SNP [dm3] 2L_12887485_SNP [dm6]	A	T	3.606e^-4	0.956	INTERGENIC
3L	9352036	3L_9352036_SNP [dm3] 3L_9358936_SNP [dm6]	C	A	3.609e^-4	0.956	UPSTREAM CG32039 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9352632	3L_9352632_SNP [dm3] 3L_9359532_SNP [dm6]	T	C	3.609e^-4	0.956	UTR_3_PRIME CG32039 UPSTREAM UGP & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3R	7381549	3R_7381549_SNP [dm3] 3R_11555827_SNP [dm6]	C	A	3.610e^-4	0.956	DOWNSTREAM CG14708 INTERGENIC
3L	23463663	3L_23463663_SNP [dm3] 3L_23470563_SNP [dm6]	C	T	3.616e^-4	0.956	INTERGENIC
2R	15062940	2R_15062940_SNP [dm3] 2R_19175435_SNP [dm6]	T	C	3.617e^-4	0.956	INTRON CG10737
3R	781267	3R_781267_SNP [dm3] 3R_4955545_SNP [dm6]	C	T	3.625e^-4	0.956	UPSTREAM CG14661 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8261966	2R_8261966_SNP [dm3] 2R_12374461_SNP [dm6]	C	T	3.626e^-4	0.956	SYNONYMOUS_CODING CG13160 UPSTREAM CG13159
3L	5473561	3L_5473561_INS [dm3] 3L_5480461_INS [dm6]	C	CCACTGAAAC	3.627e^-4	0.956		TF binding site mE1_TFBS_inv
3R	23081366	3R_23081366_SNP [dm3] 3R_27255644_SNP [dm6]	A	G	3.627e^-4	0.956	SYNONYMOUS_CODING TfIIA-L DOWNSTREAM woc
3R	21359911	3R_21359911_SNP [dm3] 3R_25534189_SNP [dm6]	G	A	3.636e^-4	0.956	INTRON msi
X	9143333	X_9143333_SNP [dm3] X_9249300_SNP [dm6]	C	T	3.637e^-4	0.956	INTRON Dsor1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4498774	3L_4498774_SNP [dm3] 3L_4498774_SNP [dm6]	T	A	3.646e^-4	0.956	UPSTREAM CG13721 DOWNSTREAM CG13720 INTERGENIC
2L	13695390	2L_13695390_SNP [dm3] 2L_13695390_SNP [dm6]	G	A	3.651e^-4	0.956	INTRON CG31814
3R	23587153	3R_23587153_SNP [dm3] 3R_27761431_SNP [dm6]	C	G	3.664e^-4	0.956	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8715169	2L_8715169_SNP [dm3] 2L_8715169_SNP [dm6]	G	A	3.672e^-4	0.956	UPSTREAM raw INTRON raw
2L	4800054	2L_4800054_SNP [dm3] 2L_4800054_SNP [dm6]	G	A	3.676e^-4	0.956	INTRON Clect27	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	20369163	3L_20369163_SNP [dm3] 3L_20376063_SNP [dm6]	C	A	3.680e^-4	0.956	UPSTREAM RhoBTB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	3525734	3L_3525734_SNP [dm3] 3L_3525734_SNP [dm6]	C	T	3.691e^-4	0.956	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1393737	2L_1393737_SNP [dm3] 2L_1393737_SNP [dm6]	T	C	3.692e^-4	0.956	INTRON lea
3L	22854907	3L_22854907_DEL [dm3] 3L_22861807_DEL [dm6]	GATCAATG	G	3.692e^-4	0.956	DOWNSTREAM CG13239 INTERGENIC
2L	5689734	2L_5689734_SNP [dm3] 2L_5689734_SNP [dm6]	G	C	3.698e^-4	0.956	UPSTREAM CR44819 DOWNSTREAM CR44820 INTERGENIC
2R	13552337	2R_13552337_SNP [dm3] 2R_17664832_SNP [dm6]	G	T	3.707e^-4	0.956	UTR_5_PRIME CCHa1-R UPSTREAM eIF3-S8
3L	20720802	3L_20720802_SNP [dm3] 3L_20727702_SNP [dm6]	T	A	3.708e^-4	0.956	INTERGENIC
3R	21800252	3R_21800252_SNP [dm3] 3R_25974530_SNP [dm6]	C	G	3.723e^-4	0.956	INTRON CG42261
2L	19506144	2L_19506144_SNP [dm3] 2L_19506144_SNP [dm6]	T	C	3.727e^-4	0.956	SYNONYMOUS_CODING CG10188	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	15745585	X_15745585_SNP [dm3] X_15851552_SNP [dm6]	G	C	3.730e^-4	0.956	INTRON UBL3
3L	20720511	3L_20720511_SNP [dm3] 3L_20727411_SNP [dm6]	C	T	3.738e^-4	0.956	INTERGENIC
2L	19252523	2L_19252523_SNP [dm3] 2L_19252523_SNP [dm6]	T	C	3.742e^-4	0.956	INTERGENIC
3R	13971877	3R_13971877_SNP [dm3] 3R_18146155_SNP [dm6]	A	T	3.743e^-4	0.956	INTERGENIC
2L	8714937	2L_8714937_SNP [dm3] 2L_8714937_SNP [dm6]	G	C	3.745e^-4	0.956	UPSTREAM raw INTRON raw
3L	7864826	3L_7864826_DEL [dm3] 3L_7871726_DEL [dm6]	AA	A	3.745e^-4	0.956	INTRON CG32365
2L	12887468	2L_12887468_SNP [dm3] 2L_12887468_SNP [dm6]	A	G	3.747e^-4	0.956	INTERGENIC
2L	3182976	2L_3182976_SNP [dm3] 2L_3182976_SNP [dm6]	C	G	3.750e^-4	0.956	INTRON CG34393
2R	14993328	2R_14993328_SNP [dm3] 2R_19105823_SNP [dm6]	A	T	3.750e^-4	0.956	INTRON 5-HT1A
2L	2499552	2L_2499552_SNP [dm3] 2L_2499552_SNP [dm6]	T	C	3.750e^-4	0.956	DOWNSTREAM oaf INTERGENIC
2L	12887474	2L_12887474_SNP [dm3] 2L_12887474_SNP [dm6]	T	A	3.751e^-4	0.956	INTERGENIC
3R	26389923	3R_26389923_SNP [dm3] 3R_30564201_SNP [dm6]	C	G	3.755e^-4	0.956	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	13143935	2L_13143935_SNP [dm3] 2L_13143935_SNP [dm6]	A	G	3.764e^-4	0.956	UPSTREAM CG16978 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3872564	2L_3872564_SNP [dm3] 2L_3872564_SNP [dm6]	T	C	3.765e^-4	0.956	UPSTREAM CG31957 DOWNSTREAM capu INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10812774	3L_10812774_DEL [dm3] 3L_10819674_DEL [dm6]	AAT	A	3.766e^-4	0.956	INTERGENIC
2L	13445739	2L_13445739_SNP [dm3] 2L_13445739_SNP [dm6]	C	G	3.768e^-4	0.956	UPSTREAM CG9267 INTRON CG42784	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	11100948	2L_11100948_SNP [dm3] 2L_11100948_SNP [dm6]	C	G	3.771e^-4	0.956	UPSTREAM Ge-1 DOWNSTREAM Reps INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	22162550	3L_22162550_SNP [dm3] 3L_22169450_SNP [dm6]	A	T	3.771e^-4	0.956	INTRON olf413
2L	13462249	2L_13462249_SNP [dm3] 2L_13462249_SNP [dm6]	T	C	3.787e^-4	0.956	INTRON CG42784	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	8603628	3L_8603628_INS [dm3] 3L_8610528_INS [dm6]	T	TTTTATATATATATAAT...	3.788e^-4	0.956	INTRON CG6282
2R	3521036	2R_3521036_SNP [dm3] 2R_7633531_SNP [dm6]	A	G	3.796e^-4	0.956	UTR_3_PRIME CG43341 INTRON CG43340 EXON CR45131
3R	25478641	3R_25478641_INS [dm3] 3R_29652919_INS [dm6]	C	CCC	3.812e^-4	0.956	INTRON Dop1R2
X	7677100	X_7677100_SNP [dm3] X_7783067_SNP [dm6]	A	G	3.813e^-4	0.956	INTERGENIC
X	11044400	X_11044400_SNP [dm3] X_11150367_SNP [dm6]	A	G	3.814e^-4	0.956	INTRON Lint-1	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	5215674	2L_5215674_SNP [dm3] 2L_5215674_SNP [dm6]	A	G	3.816e^-4	0.956	UPSTREAM CG7742 INTRON CG14034
3R	5263929	3R_5263929_SNP [dm3] 3R_9438207_SNP [dm6]	T	G	3.824e^-4	0.956	INTRON ps
3L	14512793	3L_14512793_SNP [dm3] 3L_14519693_SNP [dm6]	T	C	3.849e^-4	0.956	DOWNSTREAM CG4613 INTRON bbg
3R	22057374	3R_22057374_SNP [dm3] 3R_26231652_SNP [dm6]	T	C	3.857e^-4	0.956	SYNONYMOUS_CODING CG12290	TF binding site mE1_TFBS_chinmo
2R	20201914	2R_20201914_SNP [dm3] 2R_24314391_SNP [dm6]	C	T	3.862e^-4	0.956	INTERGENIC
3R	21358839	3R_21358839_SNP [dm3] 3R_25533117_SNP [dm6]	C	T	3.873e^-4	0.956	INTRON msi
2L	17918419	2L_17918419_SNP [dm3] 2L_17918419_SNP [dm6]	C	T	3.876e^-4	0.956	DOWNSTREAM CR43274 INTERGENIC
2L	3182971	2L_3182971_SNP [dm3] 2L_3182971_SNP [dm6]	A	G	3.877e^-4	0.956	INTRON CG34393
2L	8780193	2L_8780193_SNP [dm3] 2L_8780193_SNP [dm6]	G	C	3.880e^-4	0.956	SYNONYMOUS_CODING CG9468	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9588222	2R_9588222_SNP [dm3] 2R_13700717_SNP [dm6]	T	C	3.898e^-4	0.956	INTRON fas
2L	2642318	2L_2642318_SNP [dm3] 2L_2642318_SNP [dm6]	A	C	3.905e^-4	0.956	INTERGENIC
X	9790098	X_9790098_DEL [dm3] X_9896065_DEL [dm6]	GTAAACCT	G	3.905e^-4	0.956	INTRON CG15249	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	23222892	3L_23222892_SNP [dm3] 3L_23229792_SNP [dm6]	A	G	3.911e^-4	0.956	INTRON nAChRalpha4	transposable element FlyBase
2R	14202728	2R_14202728_SNP [dm3] 2R_18315223_SNP [dm6]	A	G	3.916e^-4	0.956	INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	9592274	3L_9592274_SNP [dm3] 3L_9599174_SNP [dm6]	A	G	3.919e^-4	0.956	SYNONYMOUS_CODING CG3222 DOWNSTREAM CG14177	TF binding site mE1_TFBS_cad
3R	16131188	3R_16131188_SNP [dm3] 3R_20305466_SNP [dm6]	A	T	3.920e^-4	0.956	UPSTREAM CG4367 DOWNSTREAM CG4362 INTERGENIC
2L	13829809	2L_13829809_SNP [dm3] 2L_13829809_SNP [dm6]	T	G	3.923e^-4	0.956	UPSTREAM Orc5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	2922043	3L_2922043_SNP [dm3] 3L_2922043_SNP [dm6]	A	G	3.925e^-4	0.956	INTRON Shab
X	3172280	X_3172280_SNP [dm3] X_3278247_SNP [dm6]	T	G	3.933e^-4	0.956	INTRON dnc
2L	9591090	2L_9591090_SNP [dm3] 2L_9591090_SNP [dm6]	T	A	3.936e^-4	0.956	NON_SYNONYMOUS_CODING CG3841	regulatory region REDfly_CRMs
X	7063427	X_7063427_SNP [dm3] X_7169394_SNP [dm6]	A	G	3.943e^-4	0.956	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25973114	3R_25973114_SNP [dm3] 3R_30147392_SNP [dm6]	G	A	3.946e^-4	0.956	INTRON AdoR
3R	19088192	3R_19088192_SNP [dm3] 3R_23262470_SNP [dm6]	C	T	3.949e^-4	0.956	UTR_3_PRIME orb
2R	15673284	2R_15673284_DEL [dm3] 2R_19785779_DEL [dm6]	TT	A	3.950e^-4	0.956	EXON CR45231	regulatory region REDfly_CRMs
3R	23848297	3R_23848297_SNP [dm3] 3R_28022575_SNP [dm6]	T	A	3.951e^-4	0.956	INTERGENIC
3R	23848301	3R_23848301_SNP [dm3] 3R_28022579_SNP [dm6]	A	C	3.951e^-4	0.956	INTERGENIC
3L	1272304	3L_1272304_SNP [dm3] 3L_1272304_SNP [dm6]	G	A	3.952e^-4	0.956	INTRON CG9134	TF binding site mE1_TFBS_cad
2R	7172811	2R_7172811_SNP [dm3] 2R_11285306_SNP [dm6]	A	T	3.960e^-4	0.956	UTR_3_PRIME fbl6 DOWNSTREAM CG13220
3R	23340411	3R_23340411_INS [dm3] 3R_27514689_INS [dm6]	T	TT	3.960e^-4	0.956	INTERGENIC
2R	8979644	2R_8979644_SNP [dm3] 2R_13092139_SNP [dm6]	C	G	3.962e^-4	0.956	INTERGENIC
3R	19423194	3R_19423194_SNP [dm3] 3R_23597472_SNP [dm6]	G	A	3.966e^-4	0.956	SYNONYMOUS_CODING CG10183
2L	15792971	2L_15792971_SNP [dm3] 2L_15792971_SNP [dm6]	T	A	3.971e^-4	0.956	INTERGENIC
2L	11703903	2L_11703903_SNP [dm3] 2L_11703903_SNP [dm6]	C	A	3.981e^-4	0.956	INTERGENIC
2R	20147520	2R_20147520_SNP [dm3] 2R_24259997_SNP [dm6]	A	C	3.984e^-4	0.956	INTRON CG3376	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14662693	2R_14662693_SNP [dm3] 2R_18775188_SNP [dm6]	C	G	3.985e^-4	0.956	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	7362166	2R_7362166_SNP [dm3] 2R_11474661_SNP [dm6]	T	G	3.989e^-4	0.956	START_GAINED inv UTR_5_PRIME inv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	26391802	3R_26391802_INS [dm3] 3R_30566080_INS [dm6]	T	TATTCAGATTT...	3.993e^-4	0.956	INTRON tmod
3L	19016735	3L_19016735_SNP [dm3] 3L_19023635_SNP [dm6]	T	G	3.994e^-4	0.956	INTRON nkd	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	27789219	3R_27789219_SNP [dm3] 3R_31963497_SNP [dm6]	T	G	3.994e^-4	0.956	INTRON heph	TF binding site BDTNP1_TFBS_twi
3R	480651	3R_480651_SNP [dm3] 3R_4654929_SNP [dm6]	T	C	3.999e^-4	0.956	UTR_5_PRIME spartin UPSTREAM spartin DOWNSTREAM Karybeta3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
2R	15673330	2R_15673330_SNP [dm3] 2R_19785825_SNP [dm6]	C	T	4.001e^-4	0.956	EXON CR45231	regulatory region REDfly_CRMs
3L	13887398	3L_13887398_DEL [dm3] 3L_13894298_DEL [dm6]	TAAATCAAGTT...	T	4.010e^-4	0.956	INTRON dysc
2R	14081081	2R_14081081_SNP [dm3] 2R_18193576_SNP [dm6]	A	T	4.011e^-4	0.956	UPSTREAM CG33958 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	15500766	2L_15500766_SNP [dm3] 2L_15500766_SNP [dm6]	G	A	4.025e^-4	0.956	INTRON lace	TF binding site BDTNP1_TFBS_dl
X	21310472	X_21310472_SNP [dm3] X_21439445_SNP [dm6]	T	A	4.029e^-4	0.956	INTRON CG42343
X	14993353	X_14993353_SNP [dm3] X_15099320_SNP [dm6]	A	G	4.029e^-4	0.956	INTRON Rab3-GEF
3R	14660401	3R_14660401_SNP [dm3] 3R_18834679_SNP [dm6]	C	G	4.045e^-4	0.956	INTRON CG18208
2R	7363613	2R_7363613_SNP [dm3] 2R_11476108_SNP [dm6]	T	G	4.046e^-4	0.956	NON_SYNONYMOUS_CODING inv	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26096432	3R_26096432_SNP [dm3] 3R_30270710_SNP [dm6]	T	A	4.052e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	26096437	3R_26096437_SNP [dm3] 3R_30270715_SNP [dm6]	T	A	4.052e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	7997783	X_7997783_SNP [dm3] X_8103750_SNP [dm6]	G	A	4.052e^-4	0.956	INTRON Gclc	TF binding site mE1_TFBS_chinmo
2R	9222088	2R_9222088_SNP [dm3] 2R_13334583_SNP [dm6]	A	G	4.058e^-4	0.956	INTRON CR44206
3R	19131441	3R_19131441_SNP [dm3] 3R_23305719_SNP [dm6]	C	A	4.062e^-4	0.956	INTRON pnt
3L	19926389	3L_19926389_SNP [dm3] 3L_19933289_SNP [dm6]	C	G	4.063e^-4	0.956	UPSTREAM CR45678 DOWNSTREAM RhoGDI INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	18472251	2L_18472251_SNP [dm3] 2L_18472251_SNP [dm6]	A	T	4.066e^-4	0.956	UPSTREAM mir-125 DOWNSTREAM mir-100 & 2 others EXON let-7-C
3R	7379908	3R_7379908_SNP [dm3] 3R_11554186_SNP [dm6]	A	T	4.068e^-4	0.956	UTR_5_PRIME CG14708
3L	654393	3L_654393_SNP [dm3] 3L_654393_SNP [dm6]	T	C	4.070e^-4	0.956	UTR_5_PRIME Rev1 UPSTREAM MED30	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	23848311	3R_23848311_SNP [dm3] 3R_28022589_SNP [dm6]	G	T	4.071e^-4	0.956	INTERGENIC
2L	9230252	2L_9230252_SNP [dm3] 2L_9230252_SNP [dm6]	A	G	4.075e^-4	0.956	INTRON tai	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	23701753	3L_23701753_SNP [dm3] 3L_23708653_SNP [dm6]	G	A	4.079e^-4	0.956	INTERGENIC	transposable element FlyBase
2L	9451818	2L_9451818_SNP [dm3] 2L_9451818_SNP [dm6]	G	T	4.080e^-4	0.956	INTRON numb
2L	11705199	2L_11705199_SNP [dm3] 2L_11705199_SNP [dm6]	C	G	4.081e^-4	0.956	INTERGENIC
3L	7824281	3L_7824281_DEL [dm3] 3L_7831181_DEL [dm6]	TGCT	T	4.097e^-4	0.956	CODON_DELETION Pdp1 INTRON Pdp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24876553	3R_24876553_SNP [dm3] 3R_29050831_SNP [dm6]	A	T	4.105e^-4	0.956	UPSTREAM CG11841 DOWNSTREAM CG11837 INTERGENIC	TF binding site mE1_TFBS_cad
X	1173370	X_1173370_SNP [dm3] X_1279337_SNP [dm6]	G	T	4.110e^-4	0.956	INTERGENIC
3L	21864507	3L_21864507_SNP [dm3] 3L_21871407_SNP [dm6]	G	A	4.112e^-4	0.956	INTRON mub	TF binding site mE1_TFBS_cad
3R	7381532	3R_7381532_SNP [dm3] 3R_11555810_SNP [dm6]	A	G	4.112e^-4	0.956	DOWNSTREAM CG14708 INTERGENIC
2L	16218869	2L_16218869_SNP [dm3] 2L_16218869_SNP [dm6]	C	A	4.114e^-4	0.956	INTERGENIC
2L	1282286	2L_1282286_SNP [dm3] 2L_1282286_SNP [dm6]	G	C	4.118e^-4	0.956	INTRON robo3
2L	5702877	2L_5702877_SNP [dm3] 2L_5702877_SNP [dm6]	T	C	4.121e^-4	0.956	INTERGENIC
3L	21621086	3L_21621086_SNP [dm3] 3L_21627986_SNP [dm6]	C	T	4.123e^-4	0.956	SYNONYMOUS_CODING CG11306 DOWNSTREAM MED1
X	7062871	X_7062871_SNP [dm3] X_7168838_SNP [dm6]	T	C	4.127e^-4	0.956	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15214946	2L_15214946_SNP [dm3] 2L_15214946_SNP [dm6]	T	G	4.141e^-4	0.956	UPSTREAM CG43230 INTERGENIC
2R	6767256	2R_6767256_SNP [dm3] 2R_10879751_SNP [dm6]	C	G	4.144e^-4	0.956	UPSTREAM Pex6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	15403510	2L_15403510_SNP [dm3] 2L_15403510_SNP [dm6]	G	A	4.145e^-4	0.956	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10861672	3L_10861672_SNP [dm3] 3L_10868572_SNP [dm6]	T	A	4.150e^-4	0.956	INTRON tna
2L	15745021	2L_15745021_SNP [dm3] 2L_15745021_SNP [dm6]	G	A	4.167e^-4	0.956	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Trl
3L	3390013	3L_3390013_SNP [dm3] 3L_3390013_SNP [dm6]	G	A	4.169e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18978256	3R_18978256_SNP [dm3] 3R_23152534_SNP [dm6]	A	T	4.175e^-4	0.956	UTR_3_PRIME unk DOWNSTREAM unk
3L	19016678	3L_19016678_DEL [dm3] 3L_19023578_DEL [dm6]	TTCGGAGGGA	T	4.180e^-4	0.956	INTRON nkd	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	16967890	3L_16967890_SNP [dm3] 3L_16974790_SNP [dm6]	C	G	4.183e^-4	0.956	INTRON Exn	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	6604111	3L_6604111_SNP [dm3] 3L_6611011_SNP [dm6]	G	A	4.185e^-4	0.956	INTRON CG8398
2L	3811947	2L_3811947_SNP [dm3] 2L_3811947_SNP [dm6]	C	T	4.186e^-4	0.956	SYNONYMOUS_CODING CG3407	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	11704756	2L_11704756_SNP [dm3] 2L_11704756_SNP [dm6]	T	A	4.191e^-4	0.956	INTERGENIC
2L	15941399	2L_15941399_SNP [dm3] 2L_15941399_SNP [dm6]	C	T	4.194e^-4	0.956	UPSTREAM CG12448 INTRON beat-Ib
X	19779960	X_19779960_SNP [dm3] X_19885927_SNP [dm6]	C	A	4.195e^-4	0.956	DOWNSTREAM amn INTRON Hers	TF binding site BDTNP1_TFBS_dl
3L	12842508	3L_12842508_SNP [dm3] 3L_12849408_SNP [dm6]	T	G	4.196e^-4	0.956	SYNONYMOUS_CODING CG10948 UPSTREAM Wbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15801407	2R_15801407_SNP [dm3] 2R_19913902_SNP [dm6]	A	G	4.202e^-4	0.956	INTERGENIC
2L	5300901	2L_5300901_SNP [dm3] 2L_5300901_SNP [dm6]	T	A	4.203e^-4	0.956	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	22531857	3R_22531857_SNP [dm3] 3R_26706135_SNP [dm6]	A	G	4.211e^-4	0.956	INTRON amon
X	7905445	X_7905445_SNP [dm3] X_8011412_SNP [dm6]	T	C	4.214e^-4	0.956	INTRON Tbh
3L	20720252	3L_20720252_SNP [dm3] 3L_20727152_SNP [dm6]	C	A	4.217e^-4	0.956	INTERGENIC
3L	527288	3L_527288_SNP [dm3] 3L_527288_SNP [dm6]	G	A	4.222e^-4	0.956	UPSTREAM CR45117 INTRON klar EXON CR45118
3R	19571032	3R_19571032_SNP [dm3] 3R_23745310_SNP [dm6]	A	T	4.235e^-4	0.956	INTRON Hmgcr
3L	22074282	3L_22074282_SNP [dm3] 3L_22081182_SNP [dm6]	G	T	4.239e^-4	0.956	DOWNSTREAM Sfp79B INTERGENIC
2L	22026304	2L_22026304_SNP [dm3] 2L_22026304_SNP [dm6]	A	C	4.247e^-4	0.956	DOWNSTREAM tio INTERGENIC
3L	7863429	3L_7863429_SNP [dm3] 3L_7870329_SNP [dm6]	A	T	4.251e^-4	0.956	INTRON CG32365	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3L	3526069	3L_3526069_SNP [dm3] 3L_3526069_SNP [dm6]	A	T	4.256e^-4	0.956	INTRON Eip63E
3R	26152341	3R_26152341_MNP [dm3] 3R_30326619_MNP [dm6]	AAT	TTC	4.260e^-4	0.956	INTRON hdc
2R	11037696	2R_11037696_SNP [dm3] 2R_15150191_SNP [dm6]	G	C	4.273e^-4	0.956	DOWNSTREAM CG7544 INTERGENIC
X	7063783	X_7063783_SNP [dm3] X_7169750_SNP [dm6]	A	G	4.274e^-4	0.956	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	19220639	2R_19220639_SNP [dm3] 2R_23333116_SNP [dm6]	T	A	4.275e^-4	0.956	INTERGENIC
2L	11302550	2L_11302550_SNP [dm3] 2L_11302550_SNP [dm6]	C	A	4.276e^-4	0.956	INTERGENIC
3R	21214197	3R_21214197_SNP [dm3] 3R_25388475_SNP [dm6]	A	G	4.285e^-4	0.956	INTRON Fur1	TF binding site BDTNP1_TFBS_dl
2R	6759338	2R_6759338_SNP [dm3] 2R_10871833_SNP [dm6]	A	T	4.294e^-4	0.956	INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	443057	3R_443057_SNP [dm3] 3R_4617335_SNP [dm6]	A	G	4.297e^-4	0.956	INTRON 5-HT2A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3791012	2L_3791012_SNP [dm3] 2L_3791012_SNP [dm6]	G	T	4.311e^-4	0.956	NON_SYNONYMOUS_CODING CG3921
2L	3182974	2L_3182974_SNP [dm3] 2L_3182974_SNP [dm6]	G	T	4.322e^-4	0.956	INTRON CG34393
3R	7131459	3R_7131459_SNP [dm3] 3R_11305737_SNP [dm6]	A	G	4.325e^-4	0.956	UPSTREAM CR31386 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15402614	2L_15402614_SNP [dm3] 2L_15402614_SNP [dm6]	A	T	4.327e^-4	0.956	INTERGENIC
2L	13829877	2L_13829877_SNP [dm3] 2L_13829877_SNP [dm6]	A	T	4.329e^-4	0.956	START_GAINED Orc5 UTR_5_PRIME Orc5 UPSTREAM Arpc1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	14677394	2R_14677394_SNP [dm3] 2R_18789889_SNP [dm6]	A	G	4.331e^-4	0.956	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad
3L	4836341	3L_4836341_SNP [dm3] 3L_4836341_SNP [dm6]	A	G	4.333e^-4	0.956	INTERGENIC
X	16097333	X_16097333_SNP [dm3] X_16203300_SNP [dm6]	T	G	4.338e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	8581036	2L_8581036_SNP [dm3] 2L_8581036_SNP [dm6]	G	C	4.340e^-4	0.956	INTRON Sema-1a
2L	7448220	2L_7448220_SNP [dm3] 2L_7448220_SNP [dm6]	C	T	4.342e^-4	0.956	UTR_5_PRIME santa-maria INTRON santa-maria
X	10716102	X_10716102_SNP [dm3] X_10822069_SNP [dm6]	A	G	4.349e^-4	0.956	UPSTREAM Imp INTRON Imp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
2L	15738063	2L_15738063_SNP [dm3] 2L_15738063_SNP [dm6]	G	A	4.352e^-4	0.956	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	7861906	3L_7861906_SNP [dm3] 3L_7868806_SNP [dm6]	A	T	4.355e^-4	0.956	UPSTREAM CG32365 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	7863440	3L_7863440_DEL [dm3] 3L_7870340_DEL [dm6]	CGCG	C	4.355e^-4	0.956	INTRON CG32365
3L	7863450	3L_7863450_SNP [dm3] 3L_7870350_SNP [dm6]	C	T	4.355e^-4	0.956	INTRON CG32365
3L	2757447	3L_2757447_SNP [dm3] 3L_2757447_SNP [dm6]	A	G	4.356e^-4	0.956	INTRON Mrtf
3L	5756332	3L_5756332_SNP [dm3] 3L_5763232_SNP [dm6]	A	G	4.367e^-4	0.956	SYNONYMOUS_CODING CG10576 UPSTREAM snoRNA:Psi18S-1397 DOWNSTREAM snoRNA:684 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6767258	2R_6767258_SNP [dm3] 2R_10879753_SNP [dm6]	A	C	4.370e^-4	0.956	UPSTREAM Pex6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	8324200	3L_8324200_SNP [dm3] 3L_8331100_SNP [dm6]	A	G	4.372e^-4	0.956	DOWNSTREAM CG34462 INTERGENIC
2R	7363722	2R_7363722_SNP [dm3] 2R_11476217_SNP [dm6]	T	C	4.374e^-4	0.956	NON_SYNONYMOUS_CODING inv	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	9447092	X_9447092_SNP [dm3] X_9553059_SNP [dm6]	A	T	4.392e^-4	0.956	INTRON l_1_G0320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	1411464	3L_1411464_SNP [dm3] 3L_1411464_SNP [dm6]	A	T	4.400e^-4	0.956	NON_SYNONYMOUS_CODING CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	2898933	3L_2898933_SNP [dm3] 3L_2898933_SNP [dm6]	T	C	4.403e^-4	0.956	INTRON Shab
X	4076420	X_4076420_SNP [dm3] X_4182387_SNP [dm6]	T	C	4.413e^-4	0.956	INTRON Fas2
2R	15801425	2R_15801425_SNP [dm3] 2R_19913920_SNP [dm6]	C	A	4.413e^-4	0.956	INTERGENIC
3R	8861277	3R_8861277_SNP [dm3] 3R_13035555_SNP [dm6]	T	C	4.416e^-4	0.956	SYNONYMOUS_CODING ry	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	20564826	3L_20564826_SNP [dm3] 3L_20571726_SNP [dm6]	C	G	4.417e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13445438	2L_13445438_SNP [dm3] 2L_13445438_SNP [dm6]	T	C	4.423e^-4	0.956	INTRON CG42784 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2R	6782655	2R_6782655_SNP [dm3] 2R_10895150_SNP [dm6]	G	T	4.429e^-4	0.956	UPSTREAM cag INTRON CG12942	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	6782688	2R_6782688_SNP [dm3] 2R_10895183_SNP [dm6]	A	C	4.429e^-4	0.956	UPSTREAM cag INTRON CG12942	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6782822	2R_6782822_SNP [dm3] 2R_10895317_SNP [dm6]	G	A	4.429e^-4	0.956	NON_SYNONYMOUS_CODING CG12942 UPSTREAM cag	TF binding site mE1_TFBS_sens
3R	26420897	3R_26420897_SNP [dm3] 3R_30595175_SNP [dm6]	G	A	4.429e^-4	0.956	SYNONYMOUS_CODING CG2246
3L	11545374	3L_11545374_SNP [dm3] 3L_11552274_SNP [dm6]	G	A	4.439e^-4	0.956	DOWNSTREAM mir-4968 INTRON Mob2	TF binding site BDTNP1_TFBS_dl
2L	5865482	2L_5865482_SNP [dm3] 2L_5865482_SNP [dm6]	G	T	4.442e^-4	0.956	INTRON rau
2R	13493439	2R_13493439_SNP [dm3] 2R_17605934_SNP [dm6]	A	T	4.442e^-4	0.956	INTRON CG10936
X	13974112	X_13974112_SNP [dm3] X_14080079_SNP [dm6]	T	C	4.443e^-4	0.956	INTERGENIC
2L	15596547	2L_15596547_SNP [dm3] 2L_15596547_SNP [dm6]	G	A	4.463e^-4	0.956	INTERGENIC
3L	11442994	3L_11442994_SNP [dm3] 3L_11449894_SNP [dm6]	G	A	4.464e^-4	0.956	INTERGENIC
3R	18305132	3R_18305132_SNP [dm3] 3R_22479410_SNP [dm6]	G	A	4.471e^-4	0.956	SYNONYMOUS_CODING Nrx-1
2L	1393722	2L_1393722_SNP [dm3] 2L_1393722_SNP [dm6]	A	G	4.471e^-4	0.956	INTRON lea
3L	13994556	3L_13994556_SNP [dm3] 3L_14001456_SNP [dm6]	A	T	4.482e^-4	0.956	UPSTREAM upSET INTRON CG8783	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2L	1854539	2L_1854539_SNP [dm3] 2L_1854539_SNP [dm6]	G	A	4.484e^-4	0.956	INTRON wry
3L	20527710	3L_20527710_INS [dm3] 3L_20534610_INS [dm6]	C	CC	4.484e^-4	0.956	INTRON Rcd2 & 1 other
3L	2757800	3L_2757800_SNP [dm3] 3L_2757800_SNP [dm6]	C	T	4.493e^-4	0.956	INTRON Mrtf
2R	6782726	2R_6782726_SNP [dm3] 2R_10895221_SNP [dm6]	C	A	4.496e^-4	0.956	SYNONYMOUS_CODING CG12942 UPSTREAM cag	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23976856	3R_23976856_SNP [dm3] 3R_28151134_SNP [dm6]	A	G	4.505e^-4	0.956	INTRON CG34354
2L	13445466	2L_13445466_SNP [dm3] 2L_13445466_SNP [dm6]	A	G	4.508e^-4	0.956	INTRON CG42784 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2L	6828237	2L_6828237_SNP [dm3] 2L_6828237_SNP [dm6]	C	T	4.515e^-4	0.956	INTRON sens-2	TF binding site mE1_TFBS_cad
3R	22057422	3R_22057422_SNP [dm3] 3R_26231700_SNP [dm6]	T	C	4.524e^-4	0.956	SYNONYMOUS_CODING CG12290	TF binding site mE1_TFBS_chinmo
3L	21900370	3L_21900370_SNP [dm3] 3L_21907270_SNP [dm6]	C	T	4.524e^-4	0.956	INTRON mub
3L	20703434	3L_20703434_SNP [dm3] 3L_20710334_SNP [dm6]	T	G	4.526e^-4	0.956	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	6828233	2L_6828233_SNP [dm3] 2L_6828233_SNP [dm6]	A	C	4.540e^-4	0.956	INTRON sens-2	TF binding site mE1_TFBS_cad
3L	3386620	3L_3386620_INS [dm3] 3L_3386620_INS [dm6]	A	AA	4.549e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23340332	3R_23340332_SNP [dm3] 3R_27514610_SNP [dm6]	A	G	4.557e^-4	0.956	INTERGENIC
2L	5301002	2L_5301002_SNP [dm3] 2L_5301002_SNP [dm6]	G	A	4.557e^-4	0.956	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	523916	3L_523916_SNP [dm3] 3L_523916_SNP [dm6]	C	A	4.560e^-4	0.956	INTRON klar	regulatory region REDfly_CRMs
2R	17736372	2R_17736372_SNP [dm3] 2R_21848867_SNP [dm6]	C	T	4.561e^-4	0.956	UPSTREAM tRNA:CR30406 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9143040	X_9143040_SNP [dm3] X_9249007_SNP [dm6]	G	A	4.563e^-4	0.956	SYNONYMOUS_CODING Dsor1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9749673	2L_9749673_SNP [dm3] 2L_9749673_SNP [dm6]	T	A	4.574e^-4	0.956	SPLICE_SITE_REGION Cyp4e3 INTRON Cyp4e3
3R	438067	3R_438067_SNP [dm3] 3R_4612345_SNP [dm6]	T	A	4.589e^-4	0.956	UPSTREAM 5-HT2A INTERGENIC
2R	6943759	2R_6943759_SNP [dm3] 2R_11056254_SNP [dm6]	A	T	4.592e^-4	0.956	INTRON luna
2L	15401488	2L_15401488_SNP [dm3] 2L_15401488_SNP [dm6]	C	A	4.600e^-4	0.956	UPSTREAM CR45374 INTERGENIC
3L	11443062	3L_11443062_SNP [dm3] 3L_11449962_SNP [dm6]	T	A	4.601e^-4	0.956	INTERGENIC
2R	17736629	2R_17736629_SNP [dm3] 2R_21849124_SNP [dm6]	C	G	4.606e^-4	0.956	UPSTREAM tRNA:CR30406 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	906494	3L_906494_SNP [dm3] 3L_906494_SNP [dm6]	C	T	4.608e^-4	0.956	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23320980	3L_23320980_SNP [dm3] 3L_23327880_SNP [dm6]	C	T	4.616e^-4	0.956	INTRON alpha-Cat
3L	18064394	3L_18064394_SNP [dm3] 3L_18071294_SNP [dm6]	A	C	4.631e^-4	0.956	INTRON CG44005
2L	1403674	2L_1403674_SNP [dm3] 2L_1403674_SNP [dm6]	G	A	4.633e^-4	0.956	INTRON lea	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8509387	3L_8509387_SNP [dm3] 3L_8516287_SNP [dm6]	G	A	4.651e^-4	0.956	SYNONYMOUS_CODING CG6765	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9627585	3R_9627585_INS [dm3] 3R_13801863_INS [dm6]	C	CC	4.663e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15611894	3R_15611894_SNP [dm3] 3R_19786172_SNP [dm6]	G	A	4.674e^-4	0.956	DOWNSTREAM CG11453 INTERGENIC
3L	18433350	3L_18433350_SNP [dm3] 3L_18440250_SNP [dm6]	G	A	4.691e^-4	0.956	UPSTREAM CR43280 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	4697443	2R_4697443_INS [dm3] 2R_8809938_INS [dm6]	A	AT	4.702e^-4	0.956	INTRON sns	TF binding site mE1_TFBS_inv
3L	18064407	3L_18064407_INS [dm3] 3L_18071307_INS [dm6]	A	GTTTAAGTT	4.717e^-4	0.956	INTRON CG44005
2L	6532818	2L_6532818_SNP [dm3] 2L_6532818_SNP [dm6]	C	T	4.720e^-4	0.956	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9163182	3R_9163182_SNP [dm3] 3R_13337460_SNP [dm6]	T	C	4.720e^-4	0.956	UPSTREAM PK2-R1 INTERGENIC
3L	12842511	3L_12842511_SNP [dm3] 3L_12849411_SNP [dm6]	T	C	4.721e^-4	0.956	SYNONYMOUS_CODING CG10948 UPSTREAM Wbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18184653	2R_18184653_SNP [dm3] 2R_22297148_SNP [dm6]	A	G	4.737e^-4	0.956	DOWNSTREAM CG5819 INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	7411305	3R_7411305_SNP [dm3] 3R_11585583_SNP [dm6]	C	A	4.743e^-4	0.956	DOWNSTREAM CG6791 & 1 other INTRON CG6791
3L	2920374	3L_2920374_SNP [dm3] 3L_2920374_SNP [dm6]	C	T	4.744e^-4	0.956	INTRON Shab
3L	22618728	3L_22618728_SNP [dm3] 3L_22625628_SNP [dm6]	A	C	4.748e^-4	0.956	INTRON CG14459
3R	21432945	3R_21432945_SNP [dm3] 3R_25607223_SNP [dm6]	A	T	4.760e^-4	0.956	UTR_3_PRIME msi INTRON ymp
2L	8714934	2L_8714934_SNP [dm3] 2L_8714934_SNP [dm6]	A	G	4.764e^-4	0.956	UPSTREAM raw INTRON raw
3R	26391748	3R_26391748_SNP [dm3] 3R_30566026_SNP [dm6]	G	C	4.766e^-4	0.956	INTRON tmod
3L	22618668	3L_22618668_SNP [dm3] 3L_22625568_SNP [dm6]	G	T	4.769e^-4	0.956	INTRON CG14459
2L	10491818	2L_10491818_SNP [dm3] 2L_10491818_SNP [dm6]	G	A	4.771e^-4	0.956	UTR_3_PRIME Myo31DF UPSTREAM CG13144
3L	7824067	3L_7824067_SNP [dm3] 3L_7830967_SNP [dm6]	C	G	4.782e^-4	0.956	NON_SYNONYMOUS_CODING Pdp1 INTRON Pdp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7397207	3R_7397207_SNP [dm3] 3R_11571485_SNP [dm6]	T	C	4.784e^-4	0.956	SYNONYMOUS_CODING Mrp4	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10680814	2R_10680814_SNP [dm3] 2R_14793309_SNP [dm6]	C	T	4.790e^-4	0.956	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	15401863	2L_15401863_SNP [dm3] 2L_15401863_SNP [dm6]	A	C	4.791e^-4	0.956	INTERGENIC
2L	17877656	2L_17877656_SNP [dm3] 2L_17877656_SNP [dm6]	C	G	4.792e^-4	0.956	INTERGENIC
2R	10571880	2R_10571880_SNP [dm3] 2R_14684375_SNP [dm6]	G	C	4.795e^-4	0.956	SYNONYMOUS_CODING mspo
2R	16931543	2R_16931543_SNP [dm3] 2R_21044038_SNP [dm6]	T	A	4.796e^-4	0.956	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19136755	X_19136755_SNP [dm3] X_19242722_SNP [dm6]	C	A	4.810e^-4	0.956	UPSTREAM CG14196 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6743071	2R_6743071_INS [dm3] 2R_10855566_INS [dm6]	T	TTTCCTGCATGAATAACTAG...	4.814e^-4	0.956	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
X	5739681	X_5739681_SNP [dm3] X_5845648_SNP [dm6]	A	T	4.815e^-4	0.956	NON_SYNONYMOUS_CODING CG12729
2L	10462688	2L_10462688_SNP [dm3] 2L_10462688_SNP [dm6]	T	C	4.819e^-4	0.956	DOWNSTREAM RluA-1 & 1 other INTERGENIC
2L	20392941	2L_20392941_SNP [dm3] 2L_20392941_SNP [dm6]	A	G	4.824e^-4	0.956	INTRON CG10947
2L	16152208	2L_16152208_SNP [dm3] 2L_16152208_SNP [dm6]	T	A	4.824e^-4	0.956	INTERGENIC
2L	18514266	2L_18514266_SNP [dm3] 2L_18514266_SNP [dm6]	A	T	4.826e^-4	0.956	DOWNSTREAM CG10178 INTERGENIC
3L	2401398	3L_2401398_SNP [dm3] 3L_2401398_SNP [dm6]	C	T	4.833e^-4	0.956	INTRON CG45186
X	11559084	X_11559084_SNP [dm3] X_11665051_SNP [dm6]	G	C	4.836e^-4	0.956	INTRON Ptp10D
2R	18800503	2R_18800503_SNP [dm3] 2R_22912980_SNP [dm6]	A	G	4.845e^-4	0.956	INTRON nahoda	TF binding site mE1_TFBS_HSA
3L	20341215	3L_20341215_SNP [dm3] 3L_20348115_SNP [dm6]	T	A	4.854e^-4	0.956	UPSTREAM eRF1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	9447192	X_9447192_SNP [dm3] X_9553159_SNP [dm6]	T	A	4.861e^-4	0.956	INTRON l_1_G0320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	21915277	X_21915277_SNP [dm3] X_22513441_SNP [dm6]	G	A	4.863e^-4	0.956	INTERGENIC	transposable element FlyBase
2L	8838500	2L_8838500_SNP [dm3] 2L_8838500_SNP [dm6]	C	G	4.866e^-4	0.956	INTERGENIC
3R	9169196	3R_9169196_SNP [dm3] 3R_13343474_SNP [dm6]	G	A	4.868e^-4	0.956	INTRON PK2-R1
3R	3811152	3R_3811152_SNP [dm3] 3R_7985430_SNP [dm6]	T	C	4.882e^-4	0.956	INTRON CG2781
2L	15217368	2L_15217368_SNP [dm3] 2L_15217368_SNP [dm6]	T	G	4.882e^-4	0.956	INTERGENIC
2L	9988035	2L_9988035_SNP [dm3] 2L_9988035_SNP [dm6]	G	T	4.884e^-4	0.956	INTRON bib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11076515	X_11076515_SNP [dm3] X_11182482_SNP [dm6]	T	G	4.885e^-4	0.956	UPSTREAM CG15200 INTERGENIC
3R	5472708	3R_5472708_SNP [dm3] 3R_9646986_SNP [dm6]	T	A	4.888e^-4	0.956	UPSTREAM Fst INTRON Dh44
2L	13462061	2L_13462061_SNP [dm3] 2L_13462061_SNP [dm6]	T	A	4.896e^-4	0.956	UTR_5_PRIME CG42784 INTRON CG42784	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	9352187	3L_9352187_SNP [dm3] 3L_9359087_SNP [dm6]	A	C	4.898e^-4	0.956	UTR_5_PRIME CG32039 UPSTREAM UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	20436043	3L_20436043_SNP [dm3] 3L_20442943_SNP [dm6]	C	T	4.899e^-4	0.956	INTRON CG5910	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15052414	3L_15052414_SNP [dm3] 3L_15059314_SNP [dm6]	G	T	4.903e^-4	0.956	INTRON Sytbeta
3L	11695621	3L_11695621_SNP [dm3] 3L_11702521_SNP [dm6]	A	G	4.910e^-4	0.956	INTRON CG11658
2R	18182069	2R_18182069_SNP [dm3] 2R_22294564_SNP [dm6]	G	A	4.910e^-4	0.956	NON_SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12936476	X_12936476_SNP [dm3] X_13042443_SNP [dm6]	T	A	4.911e^-4	0.956	INTRON rad
2R	17736388	2R_17736388_SNP [dm3] 2R_21848883_SNP [dm6]	G	A	4.930e^-4	0.956	UPSTREAM tRNA:CR30406 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3568132	2L_3568132_SNP [dm3] 2L_3568132_SNP [dm6]	C	T	4.944e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	25517592	3R_25517592_SNP [dm3] 3R_29691870_SNP [dm6]	C	T	4.948e^-4	0.956	UPSTREAM dmrt99B INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9050178	3L_9050178_SNP [dm3] 3L_9057078_SNP [dm6]	A	C	4.948e^-4	0.956	INTRON Argk	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	24797399	3R_24797399_SNP [dm3] 3R_28971677_SNP [dm6]	A	C	4.957e^-4	0.956	EXON CR45669
3R	13736899	3R_13736899_SNP [dm3] 3R_17911177_SNP [dm6]	T	C	4.962e^-4	0.956	UPSTREAM CG43445 INTRON Rim
2R	3531368	2R_3531368_SNP [dm3] 2R_7643863_SNP [dm6]	T	A	4.963e^-4	0.956	SYNONYMOUS_CODING CG43340 INTRON CG43340
3L	20360390	3L_20360390_SNP [dm3] 3L_20367290_SNP [dm6]	G	A	4.976e^-4	0.956	UTR_5_PRIME in UPSTREAM Toll-9	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
2R	6743131	2R_6743131_SNP [dm3] 2R_10855626_SNP [dm6]	A	G	4.987e^-4	0.956	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3L	22668853	3L_22668853_INS [dm3] 3L_22675753_INS [dm6]	T	TAGTT	4.990e^-4	0.956	INTRON CG14457
3R	24898621	3R_24898621_SNP [dm3] 3R_29072899_SNP [dm6]	G	C	5.001e^-4	0.956	INTRON CG11873	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	1215306	2L_1215306_SNP [dm3] 2L_1215306_SNP [dm6]	A	T	5.012e^-4	0.956	UPSTREAM CR45346 INTERGENIC
2L	1282283	2L_1282283_SNP [dm3] 2L_1282283_SNP [dm6]	G	A	5.013e^-4	0.956	INTRON robo3
3R	27786640	3R_27786640_SNP [dm3] 3R_31960918_SNP [dm6]	G	T	5.017e^-4	0.956	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12743424	3L_12743424_SNP [dm3] 3L_12750324_SNP [dm6]	G	C	5.024e^-4	0.956	UTR_5_PRIME CG10984 UPSTREAM CG10984 & 1 other INTRON CG10984	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	7961608	2L_7961608_SNP [dm3] 2L_7961608_SNP [dm6]	G	C	5.031e^-4	0.956	INTRON Snoo
2R	12862738	2R_12862738_SNP [dm3] 2R_16975233_SNP [dm6]	A	T	5.035e^-4	0.956	INTRON Cbp53E
2L	14569106	2L_14569106_SNP [dm3] 2L_14569106_SNP [dm6]	A	G	5.038e^-4	0.956	INTERGENIC
2R	12329796	2R_12329796_SNP [dm3] 2R_16442291_SNP [dm6]	G	T	5.039e^-4	0.956	UPSTREAM CG4409 INTERGENIC
3R	19381503	3R_19381503_SNP [dm3] 3R_23555781_SNP [dm6]	G	A	5.041e^-4	0.956	NON_SYNONYMOUS_CODING CG10164
2R	1577558	2R_1577558_SNP [dm3] 2R_5690053_SNP [dm6]	A	G	5.043e^-4	0.956	INTRON scaf
X	17935387	X_17935387_SNP [dm3] X_18041354_SNP [dm6]	G	A	5.047e^-4	0.956	INTRON Sh
2R	7313202	2R_7313202_SNP [dm3] 2R_11425697_SNP [dm6]	A	C	5.052e^-4	0.956	INTRON Drip	TF binding site mE1_TFBS_inv
3L	21317073	3L_21317073_SNP [dm3] 3L_21323973_SNP [dm6]	G	T	5.059e^-4	0.956	INTRON Rab26
3L	10477242	3L_10477242_SNP [dm3] 3L_10484142_SNP [dm6]	C	T	5.060e^-4	0.956	INTRON A2bp1
2L	2642303	2L_2642303_SNP [dm3] 2L_2642303_SNP [dm6]	G	C	5.069e^-4	0.956	INTERGENIC
X	13205073	X_13205073_SNP [dm3] X_13311040_SNP [dm6]	G	A	5.075e^-4	0.956	INTRON IP3K2
3L	1408005	3L_1408005_SNP [dm3] 3L_1408005_SNP [dm6]	A	G	5.076e^-4	0.956	INTRON Ptp61F
2R	13661291	2R_13661291_SNP [dm3] 2R_17773786_SNP [dm6]	A	T	5.091e^-4	0.956	DOWNSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	8775275	3L_8775275_SNP [dm3] 3L_8782175_SNP [dm6]	A	G	5.092e^-4	0.956	INTRON Fhos
2R	17736383	2R_17736383_SNP [dm3] 2R_21848878_SNP [dm6]	C	T	5.097e^-4	0.956	UPSTREAM tRNA:CR30406 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	1943736	3R_1943736_SNP [dm3] 3R_6118014_SNP [dm6]	G	T	5.107e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13598618	2R_13598618_SNP [dm3] 2R_17711113_SNP [dm6]	T	C	5.114e^-4	0.956	INTRON CG6424
3L	13910665	3L_13910665_SNP [dm3] 3L_13917565_SNP [dm6]	G	A	5.125e^-4	0.956	INTRON Rgl
2R	17668237	2R_17668237_SNP [dm3] 2R_21780732_SNP [dm6]	T	A	5.126e^-4	0.956	INTERGENIC
3R	21745920	3R_21745920_SNP [dm3] 3R_25920198_SNP [dm6]	C	T	5.128e^-4	0.956	SYNONYMOUS_CODING CG42235 DOWNSTREAM CG14546
3L	12742947	3L_12742947_SNP [dm3] 3L_12749847_SNP [dm6]	G	C	5.130e^-4	0.956	UPSTREAM Klc & 1 other INTRON Klc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3R	487992	3R_487992_SNP [dm3] 3R_4662270_SNP [dm6]	A	C	5.143e^-4	0.956	INTRON CG43427	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3200108	2L_3200108_SNP [dm3] 2L_3200108_SNP [dm6]	C	T	5.145e^-4	0.956	UPSTREAM CG34393 INTRON CG34393
2L	5689013	2L_5689013_SNP [dm3] 2L_5689013_SNP [dm6]	T	G	5.147e^-4	0.956	INTERGENIC
3L	5434970	3L_5434970_SNP [dm3] 3L_5441870_SNP [dm6]	G	C	5.158e^-4	0.956	UTR_3_PRIME CG34391
2R	17642179	2R_17642179_INS [dm3] 2R_21754674_INS [dm6]	A	ACATA	5.163e^-4	0.956	INTERGENIC
2R	6627537	2R_6627537_SNP [dm3] 2R_10740032_SNP [dm6]	T	A	5.170e^-4	0.956	UPSTREAM Mat1 DOWNSTREAM CG33144 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	20614752	2L_20614752_SNP [dm3] 2L_20614752_SNP [dm6]	G	A	5.171e^-4	0.956	SYNONYMOUS_CODING CG15475 INTRON CR44909
X	8534224	X_8534224_SNP [dm3] X_8640191_SNP [dm6]	G	T	5.172e^-4	0.956	INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8775285	3L_8775285_SNP [dm3] 3L_8782185_SNP [dm6]	G	C	5.174e^-4	0.956	INTRON Fhos
3R	22353994	3R_22353994_SNP [dm3] 3R_26528272_SNP [dm6]	C	T	5.174e^-4	0.956	INTRON plum
3R	21728956	3R_21728956_SNP [dm3] 3R_25903234_SNP [dm6]	G	A	5.182e^-4	0.956	SYNONYMOUS_CODING CG31089 INTRON CR43259

By genomic position
Variant impact
Gene name

Dessication Survival (in hours) phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results