DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.361e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1878 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	15116732	2R_15116732_SNP [dm3] 2R_19229227_SNP [dm6]	G	A	1.263e^-7	0.152	DOWNSTREAM CG7137 INTRON cora	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15116706	2R_15116706_SNP [dm3] 2R_19229201_SNP [dm6]	G	A	1.621e^-7	0.152	DOWNSTREAM CG7137 INTRON cora	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	11772626	2L_11772626_SNP [dm3] 2L_11772626_SNP [dm6]	G	C	4.702e^-7	0.294	INTERGENIC
2L	17681134	2L_17681134_DEL [dm3] 2L_17681134_DEL [dm6]	TA	G	1.032e^-6	0.464	INTRON CadN
X	15273585	X_15273585_SNP [dm3] X_15379552_SNP [dm6]	G	T	1.237e^-6	0.464	UPSTREAM acj6 DOWNSTREAM CG9164 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12878436	3L_12878436_SNP [dm3] 3L_12885336_SNP [dm6]	A	T	2.228e^-6	0.584	SYNONYMOUS_CODING CG14120	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6792245	2R_6792245_SNP [dm3] 2R_10904740_SNP [dm6]	C	T	2.610e^-6	0.584	SYNONYMOUS_CODING CG12943 UTR_3_PRIME CG12943
X	15273574	X_15273574_SNP [dm3] X_15379541_SNP [dm6]	A	G	2.704e^-6	0.584	UPSTREAM acj6 DOWNSTREAM CG9164 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8078685	2R_8078685_SNP [dm3] 2R_12191180_SNP [dm6]	G	A	3.445e^-6	0.584	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
2R	14880380	2R_14880380_SNP [dm3] 2R_18992875_SNP [dm6]	A	G	3.743e^-6	0.584	INTRON tn
2R	6792151	2R_6792151_SNP [dm3] 2R_10904646_SNP [dm6]	A	C	3.945e^-6	0.584	INTRON CG12943
2L	17443442	2L_17443442_SNP [dm3] 2L_17443442_SNP [dm6]	C	A	4.245e^-6	0.584	INTRON dl
X	3791539	X_3791539_SNP [dm3] X_3897506_SNP [dm6]	G	T	4.328e^-6	0.584	INTRON CG42541
3R	9031928	3R_9031928_SNP [dm3] 3R_13206206_SNP [dm6]	C	T	4.362e^-6	0.584	INTERGENIC
3R	9031423	3R_9031423_SNP [dm3] 3R_13205701_SNP [dm6]	G	T	5.308e^-6	0.584	INTERGENIC
2R	8091687	2R_8091687_SNP [dm3] 2R_12204182_SNP [dm6]	A	G	5.965e^-6	0.584	INTERGENIC
2L	1548815	2L_1548815_SNP [dm3] 2L_1548815_SNP [dm6]	C	T	6.232e^-6	0.584	INTERGENIC
2R	10072916	2R_10072916_SNP [dm3] 2R_14185411_SNP [dm6]	C	G	6.349e^-6	0.584	UTR_5_PRIME CG30069	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8988335	3R_8988335_SNP [dm3] 3R_13162613_SNP [dm6]	C	G	6.631e^-6	0.584	NON_SYNONYMOUS_CODING timeout
3R	23260140	3R_23260140_SNP [dm3] 3R_27434418_SNP [dm6]	A	T	6.915e^-6	0.584	INTRON side	TF binding site BDTNP1_TFBS_twi
2R	8089676	2R_8089676_SNP [dm3] 2R_12202171_SNP [dm6]	A	T	7.315e^-6	0.584	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10073791	2R_10073791_SNP [dm3] 2R_14186286_SNP [dm6]	G	T	7.524e^-6	0.584	SYNONYMOUS_CODING CG30069	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17623680	2R_17623680_SNP [dm3] 2R_21736175_SNP [dm6]	C	G	7.679e^-6	0.584	INTERGENIC
2L	18869715	2L_18869715_SNP [dm3] 2L_18869715_SNP [dm6]	A	T	7.700e^-6	0.584	INTRON tup	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19278285	2L_19278285_SNP [dm3] 2L_19278285_SNP [dm6]	A	G	8.277e^-6	0.584	INTERGENIC
2R	18036861	2R_18036861_SNP [dm3] 2R_22149356_SNP [dm6]	G	A	8.394e^-6	0.584	INTRON a
2R	8078974	2R_8078974_SNP [dm3] 2R_12191469_SNP [dm6]	G	C	9.315e^-6	0.584	NON_SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
2R	10083055	2R_10083055_SNP [dm3] 2R_14195550_SNP [dm6]	G	T	9.702e^-6	0.584	SYNONYMOUS_CODING CG30069	TF binding site BDTNP1_TFBS_twi
2L	11770824	2L_11770824_SNP [dm3] 2L_11770824_SNP [dm6]	T	C	9.943e^-6	0.584	INTERGENIC
2L	13960752	2L_13960752_SNP [dm3] 2L_13960752_SNP [dm6]	A	G	9.976e^-6	0.584	INTRON NimA
2L	15039331	2L_15039331_SNP [dm3] 2L_15039331_SNP [dm6]	A	G	1.022e^-5	0.584	UPSTREAM Su_H_ & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
X	15273591	X_15273591_SNP [dm3] X_15379558_SNP [dm6]	G	A	1.024e^-5	0.584	UPSTREAM acj6 DOWNSTREAM CG9164 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19204125	2L_19204125_SNP [dm3] 2L_19204125_SNP [dm6]	A	G	1.028e^-5	0.584	INTRON drl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	6989385	3L_6989385_SNP [dm3] 3L_6996285_SNP [dm6]	T	A	1.115e^-5	0.607	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_zfh1
2L	20762272	2L_20762272_DEL [dm3] 2L_20762272_DEL [dm6]	CC	C	1.191e^-5	0.607	DOWNSTREAM dia INTRON dia	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8988291	3R_8988291_INS [dm3] 3R_13162569_INS [dm6]	G	TGGA	1.192e^-5	0.607
3R	18990840	3R_18990840_SNP [dm3] 3R_23165118_SNP [dm6]	A	G	1.208e^-5	0.607	INTERGENIC
2R	8098232	2R_8098232_SNP [dm3] 2R_12210727_SNP [dm6]	G	A	1.229e^-5	0.607	SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15273469	X_15273469_SNP [dm3] X_15379436_SNP [dm6]	G	A	1.285e^-5	0.618	UPSTREAM acj6 DOWNSTREAM CG9164 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13132036	2R_13132036_SNP [dm3] 2R_17244531_SNP [dm6]	T	A	1.408e^-5	0.639	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8078684	2R_8078684_SNP [dm3] 2R_12191179_SNP [dm6]	A	G	1.427e^-5	0.639	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
2L	13960721	2L_13960721_SNP [dm3] 2L_13960721_SNP [dm6]	A	C	1.461e^-5	0.639	INTRON NimA
3L	18111122	3L_18111122_SNP [dm3] 3L_18118022_SNP [dm6]	C	A	1.465e^-5	0.639	UTR_3_PRIME CG32195 INTRON CG7341
2L	19207259	2L_19207259_SNP [dm3] 2L_19207259_SNP [dm6]	C	T	1.521e^-5	0.648	SYNONYMOUS_CODING drl
2R	14880371	2R_14880371_SNP [dm3] 2R_18992866_SNP [dm6]	A	G	1.575e^-5	0.656	INTRON tn
2L	11967868	2L_11967868_SNP [dm3] 2L_11967868_SNP [dm6]	T	C	1.681e^-5	0.667	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
X	11844826	X_11844826_SNP [dm3] X_11950793_SNP [dm6]	G	C	1.713e^-5	0.667	INTRON cac
2R	19268153	2R_19268153_SNP [dm3] 2R_23380630_SNP [dm6]	G	A	1.731e^-5	0.667	UPSTREAM yellow-d2 DOWNSTREAM yellow-d INTRON CG13551
2R	8101879	2R_8101879_SNP [dm3] 2R_12214374_SNP [dm6]	G	A	1.772e^-5	0.667	UTR_3_PRIME CG13171
2L	8828579	2L_8828579_SNP [dm3] 2L_8828579_SNP [dm6]	C	A	1.786e^-5	0.667	NON_SYNONYMOUS_CODING SoxN UTR_3_PRIME SoxN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	9031918	3R_9031918_SNP [dm3] 3R_13206196_SNP [dm6]	C	A	1.833e^-5	0.667	INTERGENIC
2R	11594127	2R_11594127_SNP [dm3] 2R_15706622_SNP [dm6]	C	T	1.876e^-5	0.667	INTERGENIC
3L	5636654	3L_5636654_SNP [dm3] 3L_5643554_SNP [dm6]	A	T	1.884e^-5	0.667	UPSTREAM Blimp-1 INTRON Blimp-1
2L	19207364	2L_19207364_SNP [dm3] 2L_19207364_SNP [dm6]	T	C	1.948e^-5	0.676	SYNONYMOUS_CODING drl
3R	9147234	3R_9147234_SNP [dm3] 3R_13321512_SNP [dm6]	A	G	2.018e^-5	0.678	INTERGENIC
2L	19207490	2L_19207490_SNP [dm3] 2L_19207490_SNP [dm6]	C	T	2.088e^-5	0.678	SYNONYMOUS_CODING drl
3L	10586812	3L_10586812_SNP [dm3] 3L_10593712_SNP [dm6]	C	T	2.097e^-5	0.678	UTR_3_PRIME A2bp1 DOWNSTREAM A2bp1
2L	15641504	2L_15641504_SNP [dm3] 2L_15641504_SNP [dm6]	T	A	2.098e^-5	0.678	INTERGENIC
2L	6280767	2L_6280767_SNP [dm3] 2L_6280767_SNP [dm6]	A	T	2.271e^-5	0.716	INTRON Ddr
2R	15920651	2R_15920651_SNP [dm3] 2R_20033146_SNP [dm6]	T	C	2.314e^-5	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9369700	2R_9369700_SNP [dm3] 2R_13482195_SNP [dm6]	C	G	2.328e^-5	0.716	INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	12770439	3L_12770439_SNP [dm3] 3L_12777339_SNP [dm6]	A	G	2.406e^-5	0.728	SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8988821	3R_8988821_SNP [dm3] 3R_13163099_SNP [dm6]	G	A	2.460e^-5	0.732	SYNONYMOUS_CODING timeout
3R	9114055	3R_9114055_SNP [dm3] 3R_13288333_SNP [dm6]	A	T	2.524e^-5	0.74	INTRON CG15887	TF binding site mE1_TFBS_inv
2R	8091181	2R_8091181_SNP [dm3] 2R_12203676_SNP [dm6]	A	C	2.586e^-5	0.744	INTERGENIC
2R	17138747	2R_17138747_SNP [dm3] 2R_21251242_SNP [dm6]	A	T	2.658e^-5	0.744	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	14367854	3L_14367854_SNP [dm3] 3L_14374754_SNP [dm6]	T	C	2.702e^-5	0.744	INTERGENIC
2L	17438872	2L_17438872_SNP [dm3] 2L_17438872_SNP [dm6]	G	T	2.729e^-5	0.744	UTR_3_PRIME dl INTRON dl
2L	12689629	2L_12689629_SNP [dm3] 2L_12689629_SNP [dm6]	A	G	2.847e^-5	0.744	DOWNSTREAM CG5525 INTERGENIC	TF binding site mE1_TFBS_inv
2L	13568509	2L_13568509_SNP [dm3] 2L_13568509_SNP [dm6]	G	A	2.855e^-5	0.744	INTRON kuz
3R	9043065	3R_9043065_SNP [dm3] 3R_13217343_SNP [dm6]	A	G	2.892e^-5	0.744	INTERGENIC
2L	15038960	2L_15038960_SNP [dm3] 2L_15038960_SNP [dm6]	T	A	2.919e^-5	0.744	UPSTREAM Su_H_ & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	11770846	2L_11770846_SNP [dm3] 2L_11770846_SNP [dm6]	G	A	2.928e^-5	0.744	INTERGENIC
2R	8101905	2R_8101905_SNP [dm3] 2R_12214400_SNP [dm6]	T	G	2.971e^-5	0.744	DOWNSTREAM CG13171 INTERGENIC
2R	8100594	2R_8100594_SNP [dm3] 2R_12213089_SNP [dm6]	G	A	2.974e^-5	0.744	UPSTREAM Sr-CII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	13713591	2L_13713591_SNP [dm3] 2L_13713591_SNP [dm6]	G	T	3.072e^-5	0.758	INTRON CG31814
2L	17438958	2L_17438958_SNP [dm3] 2L_17438958_SNP [dm6]	G	C	3.172e^-5	0.764	UTR_3_PRIME dl INTRON dl
2L	10285857	2L_10285857_SNP [dm3] 2L_10285857_SNP [dm6]	A	T	3.194e^-5	0.764	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	8986186	3R_8986186_SNP [dm3] 3R_13160464_SNP [dm6]	T	A	3.255e^-5	0.764	INTRON timeout
2L	9750542	2L_9750542_SNP [dm3] 2L_9750542_SNP [dm6]	C	G	3.325e^-5	0.764	UPSTREAM Cyp4e3 INTERGENIC
2L	1548748	2L_1548748_SNP [dm3] 2L_1548748_SNP [dm6]	G	A	3.327e^-5	0.764	INTERGENIC
2L	15046905	2L_15046905_SNP [dm3] 2L_15046905_SNP [dm6]	A	G	3.362e^-5	0.764	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad
3R	25060267	3R_25060267_SNP [dm3] 3R_29234545_SNP [dm6]	C	T	3.379e^-5	0.764	UTR_3_PRIME CG15817 DOWNSTREAM CG11951
2L	9672035	2L_9672035_SNP [dm3] 2L_9672035_SNP [dm6]	T	G	3.492e^-5	0.771	UPSTREAM CR44150 INTERGENIC
2L	17681130	2L_17681130_SNP [dm3] 2L_17681130_SNP [dm6]	T	A	3.562e^-5	0.771	INTRON CadN
2L	16994753	2L_16994753_SNP [dm3] 2L_16994753_SNP [dm6]	G	C	3.621e^-5	0.771	DOWNSTREAM beat-IIIb INTERGENIC
2L	17834211	2L_17834211_SNP [dm3] 2L_17834211_SNP [dm6]	A	T	3.648e^-5	0.771	INTRON CadN2	TF binding site mE1_TFBS_HSA
3R	9078765	3R_9078765_SNP [dm3] 3R_13253043_SNP [dm6]	C	T	3.675e^-5	0.771	INTRON Ace
3L	9758353	3L_9758353_SNP [dm3] 3L_9765253_SNP [dm6]	C	T	3.704e^-5	0.771	INTRON CG8177
2R	8090560	2R_8090560_SNP [dm3] 2R_12203055_SNP [dm6]	A	T	3.739e^-5	0.771	INTERGENIC
3R	9076306	3R_9076306_SNP [dm3] 3R_13250584_SNP [dm6]	T	A	3.754e^-5	0.771	INTRON Ace
2L	4472569	2L_4472569_SNP [dm3] 2L_4472569_SNP [dm6]	C	T	3.792e^-5	0.771	INTRON ine
2R	7367820	2R_7367820_SNP [dm3] 2R_11480315_SNP [dm6]	T	C	3.825e^-5	0.771	INTRON inv
2R	10083496	2R_10083496_SNP [dm3] 2R_14195991_SNP [dm6]	A	G	3.887e^-5	0.772	SYNONYMOUS_CODING CG30069	TF binding site BDTNP1_TFBS_twi
X	14096033	X_14096033_SNP [dm3] X_14202000_SNP [dm6]	C	A	3.912e^-5	0.772	SYNONYMOUS_CODING l_1_G0007	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13873390	2L_13873390_SNP [dm3] 2L_13873390_SNP [dm6]	C	T	4.000e^-5	0.775	INTRON CenG1A
2L	13568373	2L_13568373_SNP [dm3] 2L_13568373_SNP [dm6]	C	T	4.010e^-5	0.775	INTRON kuz
3R	9163496	3R_9163496_SNP [dm3] 3R_13337774_SNP [dm6]	G	C	4.056e^-5	0.776	UPSTREAM PK2-R1 INTERGENIC
2R	8101919	2R_8101919_SNP [dm3] 2R_12214414_SNP [dm6]	T	C	4.095e^-5	0.776	DOWNSTREAM CG13171 INTERGENIC
3L	13332818	3L_13332818_SNP [dm3] 3L_13339718_SNP [dm6]	A	G	4.177e^-5	0.783	INTERGENIC
3R	9031458	3R_9031458_SNP [dm3] 3R_13205736_SNP [dm6]	G	C	4.247e^-5	0.789	INTERGENIC
2R	10084209	2R_10084209_SNP [dm3] 2R_14196704_SNP [dm6]	A	T	4.524e^-5	0.802	NON_SYNONYMOUS_CODING CG30069	TF binding site BDTNP1_TFBS_twi
2L	20787491	2L_20787491_DEL [dm3] 2L_20787491_DEL [dm6]	GGTTTG	G	4.536e^-5	0.802	UPSTREAM Pomp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2R	1782254	2R_1782254_INS [dm3] 2R_5894749_INS [dm6]	T	TATT	4.591e^-5	0.802	INTRON CG43366
X	14739408	X_14739408_SNP [dm3] X_14845375_SNP [dm6]	C	G	4.642e^-5	0.802	UPSTREAM CG12539 INTRON Flo2
3R	3591921	3R_3591921_SNP [dm3] 3R_7766199_SNP [dm6]	A	C	4.702e^-5	0.802	INTERGENIC	TF binding site mE1_TFBS_inv
3R	23889941	3R_23889941_SNP [dm3] 3R_28064219_SNP [dm6]	C	A	4.706e^-5	0.802	INTRON CG34362
2L	14376896	2L_14376896_SNP [dm3] 2L_14376896_SNP [dm6]	C	T	4.712e^-5	0.802	INTERGENIC
X	14154141	X_14154141_SNP [dm3] X_14260108_SNP [dm6]	T	G	4.719e^-5	0.802	INTERGENIC
3R	9076295	3R_9076295_DEL [dm3] 3R_13250573_DEL [dm6]	CGATC	C	4.801e^-5	0.802	INTRON Ace
X	13740044	X_13740044_SNP [dm3] X_13846011_SNP [dm6]	T	C	4.819e^-5	0.802	UPSTREAM AMPdeam DOWNSTREAM mamo INTERGENIC
3L	18111112	3L_18111112_SNP [dm3] 3L_18118012_SNP [dm6]	T	C	4.924e^-5	0.802	UTR_3_PRIME CG32195 INTRON CG7341
3R	8986293	3R_8986293_SNP [dm3] 3R_13160571_SNP [dm6]	T	C	4.962e^-5	0.802	INTRON timeout
3L	13050382	3L_13050382_SNP [dm3] 3L_13057282_SNP [dm6]	G	A	4.983e^-5	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11898577	2R_11898577_SNP [dm3] 2R_16011072_SNP [dm6]	C	T	5.096e^-5	0.802	SYNONYMOUS_CODING CG8388 UPSTREAM CG8389 INTRON CG8389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11901378	2R_11901378_SNP [dm3] 2R_16013873_SNP [dm6]	C	A	5.099e^-5	0.802	UTR_3_PRIME Prosbeta1 DOWNSTREAM CG8389
3R	9188878	3R_9188878_DEL [dm3] 3R_13363156_DEL [dm6]	GAGAGTAAACAAG...	G	5.241e^-5	0.802	INTRON poly
2L	1552946	2L_1552946_SNP [dm3] 2L_1552946_SNP [dm6]	G	A	5.241e^-5	0.802	INTERGENIC
2R	11903824	2R_11903824_SNP [dm3] 2R_16016319_SNP [dm6]	C	T	5.284e^-5	0.802	DOWNSTREAM Rrp42 INTRON CG8397	TF binding site mE1_TFBS_sens
2R	11906639	2R_11906639_SNP [dm3] 2R_16019134_SNP [dm6]	C	T	5.317e^-5	0.802	INTRON CG8399
3L	15091133	3L_15091133_SNP [dm3] 3L_15098033_SNP [dm6]	T	A	5.386e^-5	0.802	UTR_5_PRIME CTPsyn UPSTREAM CTPsyn DOWNSTREAM CR43973 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	11903821	2R_11903821_SNP [dm3] 2R_16016316_SNP [dm6]	A	G	5.446e^-5	0.802	DOWNSTREAM Rrp42 INTRON CG8397	TF binding site mE1_TFBS_sens
3L	12346886	3L_12346886_SNP [dm3] 3L_12353786_SNP [dm6]	C	T	5.653e^-5	0.802	INTERGENIC
2L	1552942	2L_1552942_SNP [dm3] 2L_1552942_SNP [dm6]	A	T	5.664e^-5	0.802	INTERGENIC
2L	8759593	2L_8759593_SNP [dm3] 2L_8759593_SNP [dm6]	A	G	5.671e^-5	0.802	INTERGENIC
3R	9076308	3R_9076308_SNP [dm3] 3R_13250586_SNP [dm6]	T	C	5.710e^-5	0.802	INTRON Ace
3L	3312935	3L_3312935_SNP [dm3] 3L_3312935_SNP [dm6]	G	A	5.815e^-5	0.802	NON_SYNONYMOUS_CODING ZnT63C	TF binding site mE1_TFBS_cad
3L	2148211	3L_2148211_INS [dm3] 3L_2148211_INS [dm6]	C	CC	5.860e^-5	0.802	INTRON zormin
3L	6989352	3L_6989352_INS [dm3] 3L_6996252_INS [dm6]	G	GAA	5.866e^-5	0.802	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_zfh1
2L	8041690	2L_8041690_SNP [dm3] 2L_8041690_SNP [dm6]	T	A	5.880e^-5	0.802	SYNONYMOUS_CODING CG7429 DOWNSTREAM Cka & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	13307729	3L_13307729_SNP [dm3] 3L_13314629_SNP [dm6]	C	G	5.949e^-5	0.802	INTERGENIC
2L	8041685	2L_8041685_SNP [dm3] 2L_8041685_SNP [dm6]	C	T	5.997e^-5	0.802	NON_SYNONYMOUS_CODING CG7429 DOWNSTREAM Cka & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	9076302	3R_9076302_SNP [dm3] 3R_13250580_SNP [dm6]	A	T	6.028e^-5	0.802	INTRON Ace
3L	17886042	3L_17886042_SNP [dm3] 3L_17892942_SNP [dm6]	G	A	6.029e^-5	0.802	INTRON Tsp74F	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11594130	2R_11594130_SNP [dm3] 2R_15706625_SNP [dm6]	G	T	6.105e^-5	0.802	INTERGENIC
2R	17623689	2R_17623689_SNP [dm3] 2R_21736184_SNP [dm6]	T	A	6.160e^-5	0.802	INTERGENIC
2L	6641791	2L_6641791_SNP [dm3] 2L_6641791_SNP [dm6]	G	A	6.186e^-5	0.802	INTRON CG31635
3R	9076317	3R_9076317_DEL [dm3] 3R_13250595_DEL [dm6]	AG	A	6.198e^-5	0.802	INTRON Ace
2L	11409090	2L_11409090_SNP [dm3] 2L_11409090_SNP [dm6]	A	G	6.217e^-5	0.802	INTERGENIC	regulatory region REDfly_CRMs
3R	9172181	3R_9172181_SNP [dm3] 3R_13346459_SNP [dm6]	T	C	6.222e^-5	0.802	INTERGENIC
2R	9738512	2R_9738512_SNP [dm3] 2R_13851007_SNP [dm6]	G	A	6.388e^-5	0.802	NON_SYNONYMOUS_CODING CG30485
3R	24052738	3R_24052738_SNP [dm3] 3R_28227016_SNP [dm6]	G	A	6.422e^-5	0.802	INTRON CG34354
3L	19320225	3L_19320225_SNP [dm3] 3L_19327125_SNP [dm6]	G	A	6.482e^-5	0.802	INTRON pip
2L	7153581	2L_7153581_SNP [dm3] 2L_7153581_SNP [dm6]	G	C	6.505e^-5	0.802	INTRON Pvf3
2L	17444645	2L_17444645_DEL [dm3] 2L_17444645_DEL [dm6]	ACAAAT	A	6.514e^-5	0.802	INTRON dl
X	16410025	X_16410025_SNP [dm3] X_16515992_SNP [dm6]	A	G	6.541e^-5	0.802	INTRON para
2R	11174669	2R_11174669_SNP [dm3] 2R_15287164_SNP [dm6]	C	T	6.570e^-5	0.802	UPSTREAM Trpm INTRON Trpm
2L	15496427	2L_15496427_SNP [dm3] 2L_15496427_SNP [dm6]	A	G	6.582e^-5	0.802	INTERGENIC
3R	9154778	3R_9154778_SNP [dm3] 3R_13329056_SNP [dm6]	A	T	6.747e^-5	0.802	DOWNSTREAM PK2-R2 INTERGENIC
2L	1475349	2L_1475349_SNP [dm3] 2L_1475349_SNP [dm6]	T	A	6.794e^-5	0.802	INTERGENIC
2L	13941122	2L_13941122_SNP [dm3] 2L_13941122_SNP [dm6]	G	A	6.836e^-5	0.802	INTRON Ance-3
2R	17623610	2R_17623610_SNP [dm3] 2R_21736105_SNP [dm6]	G	A	6.869e^-5	0.802	INTERGENIC
3R	21746625	3R_21746625_DEL [dm3] 3R_25920903_DEL [dm6]	TGATAAGTATGAATTAGTTC...	C	6.873e^-5	0.802	UTR_3_PRIME CG42235 DOWNSTREAM CG14546
2L	4821545	2L_4821545_SNP [dm3] 2L_4821545_SNP [dm6]	A	T	6.892e^-5	0.802	UPSTREAM CG15628 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	4821582	2L_4821582_SNP [dm3] 2L_4821582_SNP [dm6]	T	C	6.892e^-5	0.802	UPSTREAM CG15628 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	13049105	3L_13049105_SNP [dm3] 3L_13056005_SNP [dm6]	A	G	6.899e^-5	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	9187039	3R_9187039_SNP [dm3] 3R_13361317_SNP [dm6]	T	C	6.916e^-5	0.802	DOWNSTREAM poly INTERGENIC
2L	4821554	2L_4821554_SNP [dm3] 2L_4821554_SNP [dm6]	C	A	6.984e^-5	0.802	UPSTREAM CG15628 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	6989346	3L_6989346_SNP [dm3] 3L_6996246_SNP [dm6]	T	A	7.038e^-5	0.802	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_zfh1
2L	11330381	2L_11330381_SNP [dm3] 2L_11330381_SNP [dm6]	T	C	7.059e^-5	0.802	INTERGENIC
2R	11522894	2R_11522894_SNP [dm3] 2R_15635389_SNP [dm6]	G	A	7.072e^-5	0.802	INTRON CG42524
X	15801998	X_15801998_SNP [dm3] X_15907965_SNP [dm6]	A	T	7.171e^-5	0.802	SYNONYMOUS_CODING CycD	TF binding site mE1_TFBS_sens
2R	11902331	2R_11902331_SNP [dm3] 2R_16014826_SNP [dm6]	G	A	7.258e^-5	0.802	UPSTREAM Rrp42 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	11327687	2R_11327687_SNP [dm3] 2R_15440182_SNP [dm6]	G	A	7.263e^-5	0.802	INTRON CG43729
2L	17680880	2L_17680880_SNP [dm3] 2L_17680880_SNP [dm6]	T	A	7.285e^-5	0.802	INTRON CadN
2R	14142166	2R_14142166_SNP [dm3] 2R_18254661_SNP [dm6]	C	T	7.291e^-5	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14367875	3L_14367875_SNP [dm3] 3L_14374775_SNP [dm6]	A	C	7.339e^-5	0.802	INTERGENIC
3L	2148208	3L_2148208_SNP [dm3] 3L_2148208_SNP [dm6]	A	G	7.343e^-5	0.802	INTRON zormin
2R	9739117	2R_9739117_SNP [dm3] 2R_13851612_SNP [dm6]	T	A	7.355e^-5	0.802	NON_SYNONYMOUS_CODING CG30485	TF binding site mE1_TFBS_HSA
2L	13568474	2L_13568474_SNP [dm3] 2L_13568474_SNP [dm6]	T	C	7.371e^-5	0.802	INTRON kuz
2R	18363533	2R_18363533_SNP [dm3] 2R_22476028_SNP [dm6]	A	T	7.373e^-5	0.802	DOWNSTREAM CG45063 INTRON CG45062
3R	9076310	3R_9076310_SNP [dm3] 3R_13250588_SNP [dm6]	C	A	7.387e^-5	0.802	INTRON Ace
X	1678785	X_1678785_SNP [dm3] X_1784752_SNP [dm6]	T	C	7.445e^-5	0.802	UTR_3_PRIME Adar DOWNSTREAM Adar INTRON CG42666
2R	8095372	2R_8095372_INS [dm3] 2R_12207867_INS [dm6]	T	TT	7.472e^-5	0.802	DOWNSTREAM CR45276 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18691141	3L_18691141_SNP [dm3] 3L_18698041_SNP [dm6]	A	T	7.485e^-5	0.802	INTRON Dic4
3R	21746799	3R_21746799_SNP [dm3] 3R_25921077_SNP [dm6]	T	G	7.649e^-5	0.807	UTR_3_PRIME CG14546 DOWNSTREAM CG42235
2L	1936999	2L_1936999_SNP [dm3] 2L_1936999_SNP [dm6]	T	A	7.655e^-5	0.807	SPLICE_SITE_REGION CG7337 INTRON CG7337	TF binding site mE1_TFBS_cad
3L	12770438	3L_12770438_SNP [dm3] 3L_12777338_SNP [dm6]	G	T	7.662e^-5	0.807	NON_SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13345542	3L_13345542_SNP [dm3] 3L_13352442_SNP [dm6]	C	T	7.718e^-5	0.809	SYNONYMOUS_CODING CG17687
2R	20557413	2R_20557413_SNP [dm3] 2R_24669890_SNP [dm6]	A	T	7.854e^-5	0.812	UPSTREAM CG33228 INTRON Pof	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8990896	3R_8990896_SNP [dm3] 3R_13165174_SNP [dm6]	G	A	7.872e^-5	0.812	INTERGENIC
X	1680409	X_1680409_SNP [dm3] X_1786376_SNP [dm6]	T	C	7.892e^-5	0.812	UTR_3_PRIME Adar INTRON CG42666
2R	17719292	2R_17719292_SNP [dm3] 2R_21831787_SNP [dm6]	C	G	7.928e^-5	0.812	UPSTREAM CG13492 DOWNSTREAM CG34040 INTERGENIC
2R	11904736	2R_11904736_SNP [dm3] 2R_16017231_SNP [dm6]	G	C	7.963e^-5	0.812	UPSTREAM CG8399 & 1 other INTERGENIC
2L	5004359	2L_5004359_SNP [dm3] 2L_5004359_SNP [dm6]	A	G	8.079e^-5	0.816	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_ttk
3R	10480607	3R_10480607_SNP [dm3] 3R_14654885_SNP [dm6]	C	A	8.130e^-5	0.816	INTRON l_3_L1231	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	11976657	2R_11976657_SNP [dm3] 2R_16089152_SNP [dm6]	C	T	8.204e^-5	0.816	SYNONYMOUS_CODING Dg
2L	13568384	2L_13568384_SNP [dm3] 2L_13568384_SNP [dm6]	G	C	8.206e^-5	0.816	INTRON kuz
3L	17948634	3L_17948634_SNP [dm3] 3L_17955534_SNP [dm6]	C	T	8.330e^-5	0.816	SYNONYMOUS_CODING Eip75B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9572585	2R_9572585_SNP [dm3] 2R_13685080_SNP [dm6]	T	A	8.331e^-5	0.816	INTRON fas
2L	13959521	2L_13959521_SNP [dm3] 2L_13959521_SNP [dm6]	T	C	8.338e^-5	0.816	INTRON NimA
2R	8091158	2R_8091158_SNP [dm3] 2R_12203653_SNP [dm6]	G	C	8.434e^-5	0.816	INTERGENIC
3R	9147403	3R_9147403_SNP [dm3] 3R_13321681_SNP [dm6]	G	A	8.473e^-5	0.816	INTERGENIC
2L	1556513	2L_1556513_DEL [dm3] 2L_1556513_DEL [dm6]	TTT	A	8.478e^-5	0.816	UTR_5_PRIME haf INTRON haf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14154166	X_14154166_SNP [dm3] X_14260133_SNP [dm6]	A	G	8.511e^-5	0.816	INTERGENIC
2R	1716659	2R_1716659_SNP [dm3] 2R_5829154_SNP [dm6]	T	C	8.547e^-5	0.816	INTRON dpr12	TF binding site mE1_TFBS_chinmo
3R	9188851	3R_9188851_SNP [dm3] 3R_13363129_SNP [dm6]	C	T	8.571e^-5	0.816	INTRON poly
2L	4472591	2L_4472591_DEL [dm3] 2L_4472591_DEL [dm6]	TA	T	8.663e^-5	0.818	INTRON ine
2R	18367012	2R_18367012_SNP [dm3] 2R_22479507_SNP [dm6]	G	A	8.762e^-5	0.818	INTRON CG4752
3L	12561426	3L_12561426_SNP [dm3] 3L_12568326_SNP [dm6]	T	G	8.829e^-5	0.818	INTRON sowah
3R	8986185	3R_8986185_SNP [dm3] 3R_13160463_SNP [dm6]	G	A	8.900e^-5	0.818	INTRON timeout
2L	12128103	2L_12128103_SNP [dm3] 2L_12128103_SNP [dm6]	G	T	8.969e^-5	0.818	SYNONYMOUS_CODING CG17211	TF binding site mE1_TFBS_HSA
2L	12128115	2L_12128115_SNP [dm3] 2L_12128115_SNP [dm6]	G	C	8.969e^-5	0.818	SYNONYMOUS_CODING CG17211	TF binding site mE1_TFBS_HSA
2R	19277469	2R_19277469_SNP [dm3] 2R_23389946_SNP [dm6]	A	G	9.030e^-5	0.818	SPLICE_SITE_REGION CG3530 DOWNSTREAM eIF2B-delta INTRON CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4821512	2L_4821512_DEL [dm3] 2L_4821512_DEL [dm6]	TT	T	9.041e^-5	0.818	UPSTREAM CG15628 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	8090749	2R_8090749_SNP [dm3] 2R_12203244_SNP [dm6]	T	A	9.108e^-5	0.818	INTERGENIC
2L	13948415	2L_13948415_SNP [dm3] 2L_13948415_SNP [dm6]	A	T	9.131e^-5	0.818	UPSTREAM CG16884 INTRON Ance-3
2R	4091181	2R_4091181_SNP [dm3] 2R_8203676_SNP [dm6]	A	C	9.227e^-5	0.818	INTRON LRP1
3L	1558852	3L_1558852_SNP [dm3] 3L_1558852_SNP [dm6]	C	T	9.255e^-5	0.818	SYNONYMOUS_CODING Pex10 UPSTREAM CG12099 DOWNSTREAM CG7879	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4868418	2R_4868418_DEL [dm3] 2R_8980913_DEL [dm6]	ATAAAA	G	9.271e^-5	0.818	INTRON CG8213	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18833632	2R_18833632_SNP [dm3] 2R_22946109_SNP [dm6]	A	G	9.301e^-5	0.818	DOWNSTREAM CG42694 INTERGENIC
2L	5369129	2L_5369129_SNP [dm3] 2L_5369129_SNP [dm6]	T	A	9.343e^-5	0.818	INTERGENIC
2L	17829955	2L_17829955_SNP [dm3] 2L_17829955_SNP [dm6]	C	A	9.454e^-5	0.818	INTRON CadN2
2L	7515453	2L_7515453_SNP [dm3] 2L_7515453_SNP [dm6]	C	T	9.532e^-5	0.818	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
2R	20471626	2R_20471626_SNP [dm3] 2R_24584103_SNP [dm6]	C	T	9.557e^-5	0.818	INTRON pio
3L	1743587	3L_1743587_SNP [dm3] 3L_1743587_SNP [dm6]	C	T	9.582e^-5	0.818	SYNONYMOUS_CODING Gk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10051447	2R_10051447_SNP [dm3] 2R_14163942_SNP [dm6]	C	T	9.603e^-5	0.818	SYNONYMOUS_CODING Tango7 DOWNSTREAM O-fut1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2L	5641861	2L_5641861_SNP [dm3] 2L_5641861_SNP [dm6]	A	G	9.652e^-5	0.818	SYNONYMOUS_CODING CG31646 UPSTREAM mir-963 & 1 other DOWNSTREAM mir-959 & 3 others
X	1677264	X_1677264_SNP [dm3] X_1783231_SNP [dm6]	A	C	9.716e^-5	0.818	SYNONYMOUS_CODING Adar UTR_3_PRIME Adar INTRON CG42666	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14083926	X_14083926_SNP [dm3] X_14189893_SNP [dm6]	T	C	9.845e^-5	0.818	SYNONYMOUS_CODING CG11585	TF binding site mE1_TFBS_chinmo
3R	15185979	3R_15185979_SNP [dm3] 3R_19360257_SNP [dm6]	T	A	9.869e^-5	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8101975	2R_8101975_SNP [dm3] 2R_12214470_SNP [dm6]	G	A	9.921e^-5	0.818	DOWNSTREAM CG13171 INTERGENIC
2R	8101945	2R_8101945_SNP [dm3] 2R_12214440_SNP [dm6]	G	T	9.979e^-5	0.818	DOWNSTREAM CG13171 INTERGENIC
2R	9146167	2R_9146167_SNP [dm3] 2R_13258662_SNP [dm6]	T	A	1.008e^-4	0.818	DOWNSTREAM CG10799 INTERGENIC
3L	678218	3L_678218_SNP [dm3] 3L_678218_SNP [dm6]	C	T	1.014e^-4	0.818	NON_SYNONYMOUS_CODING CG17129
2L	5914535	2L_5914535_SNP [dm3] 2L_5914535_SNP [dm6]	A	G	1.023e^-4	0.818	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12770442	3L_12770442_SNP [dm3] 3L_12777342_SNP [dm6]	C	G	1.027e^-4	0.818	SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19431021	X_19431021_SNP [dm3] X_19536988_SNP [dm6]	C	T	1.028e^-4	0.818	INTRON CG32532
2L	13071524	2L_13071524_SNP [dm3] 2L_13071524_SNP [dm6]	A	C	1.035e^-4	0.818	INTERGENIC
2L	17439037	2L_17439037_SNP [dm3] 2L_17439037_SNP [dm6]	C	T	1.041e^-4	0.818	UTR_3_PRIME dl INTRON dl
2R	11902779	2R_11902779_SNP [dm3] 2R_16015274_SNP [dm6]	A	G	1.045e^-4	0.818	SYNONYMOUS_CODING Rrp42 UPSTREAM Prosbeta1 DOWNSTREAM CG8397	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	14376389	2L_14376389_SNP [dm3] 2L_14376389_SNP [dm6]	A	G	1.046e^-4	0.818	INTERGENIC
3L	13345533	3L_13345533_SNP [dm3] 3L_13352433_SNP [dm6]	A	G	1.047e^-4	0.818	SYNONYMOUS_CODING CG17687
2R	8090564	2R_8090564_SNP [dm3] 2R_12203059_SNP [dm6]	G	A	1.058e^-4	0.818	INTERGENIC
2R	15670824	2R_15670824_DEL [dm3] 2R_19783319_DEL [dm6]	TAGGCAG	T	1.058e^-4	0.818	UPSTREAM CR45231 DOWNSTREAM Obp56g INTERGENIC
3L	479400	3L_479400_SNP [dm3] 3L_479400_SNP [dm6]	A	G	1.066e^-4	0.818	INTRON klar	TF binding site mE1_TFBS_HSA
2R	8101390	2R_8101390_SNP [dm3] 2R_12213885_SNP [dm6]	A	C	1.068e^-4	0.818	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14376425	2L_14376425_SNP [dm3] 2L_14376425_SNP [dm6]	C	T	1.068e^-4	0.818	INTERGENIC
2R	8101160	2R_8101160_SNP [dm3] 2R_12213655_SNP [dm6]	G	T	1.075e^-4	0.818	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	9114847	3R_9114847_SNP [dm3] 3R_13289125_SNP [dm6]	C	G	1.080e^-4	0.818	UPSTREAM CG15887 INTERGENIC
2R	16304872	2R_16304872_DEL [dm3] 2R_20417367_DEL [dm6]	TGTCGCCTGTG...	C	1.086e^-4	0.818	INTERGENIC
2R	17259746	2R_17259746_SNP [dm3] 2R_21372241_SNP [dm6]	A	T	1.087e^-4	0.818	INTRON cv-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14805478	3L_14805478_SNP [dm3] 3L_14812378_SNP [dm6]	C	G	1.088e^-4	0.818	INTRON CG17839
2R	2481645	2R_2481645_SNP [dm3] 2R_6594140_SNP [dm6]	C	T	1.095e^-4	0.818	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	12346892	3L_12346892_SNP [dm3] 3L_12353792_SNP [dm6]	A	T	1.097e^-4	0.818	INTERGENIC
3R	16820892	3R_16820892_SNP [dm3] 3R_20995170_SNP [dm6]	A	G	1.100e^-4	0.818	INTRON Calx	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17846136	2R_17846136_SNP [dm3] 2R_21958631_SNP [dm6]	A	T	1.109e^-4	0.818	INTERGENIC
2R	15117801	2R_15117801_SNP [dm3] 2R_19230296_SNP [dm6]	A	C	1.121e^-4	0.818	INTRON cora	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12887966	2R_12887966_SNP [dm3] 2R_17000461_SNP [dm6]	G	A	1.123e^-4	0.818	SYNONYMOUS_CODING ste24a UPSTREAM ste24b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6793764	3L_6793764_DEL [dm3] 3L_6800664_DEL [dm6]	GCAG	G	1.123e^-4	0.818	INTERGENIC
3L	4163845	3L_4163845_SNP [dm3] 3L_4163845_SNP [dm6]	T	C	1.127e^-4	0.818	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12391807	3L_12391807_DEL [dm3] 3L_12398707_DEL [dm6]	AACA	A	1.127e^-4	0.818	SPLICE_SITE_REGION CG32104 DOWNSTREAM Smyd4 INTRON CG32104	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12929614	3L_12929614_SNP [dm3] 3L_12936514_SNP [dm6]	G	A	1.128e^-4	0.818	INTERGENIC
2L	11409166	2L_11409166_SNP [dm3] 2L_11409166_SNP [dm6]	A	T	1.134e^-4	0.818	INTERGENIC	regulatory region REDfly_CRMs
2R	3754934	2R_3754934_SNP [dm3] 2R_7867429_SNP [dm6]	T	A	1.144e^-4	0.818	INTRON Dgk
3L	6826419	3L_6826419_SNP [dm3] 3L_6833319_SNP [dm6]	G	A	1.148e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8101995	2R_8101995_SNP [dm3] 2R_12214490_SNP [dm6]	C	T	1.153e^-4	0.818	DOWNSTREAM CG13171 INTERGENIC
2L	16656744	2L_16656744_MNP [dm3] 2L_16656744_MNP [dm6]	TTT	AAA	1.157e^-4	0.818	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
2L	11409053	2L_11409053_SNP [dm3] 2L_11409053_SNP [dm6]	A	T	1.158e^-4	0.818	INTERGENIC	regulatory region REDfly_CRMs
2L	21113191	2L_21113191_SNP [dm3] 2L_21113191_SNP [dm6]	C	T	1.166e^-4	0.818	INTRON Nhe2
3L	17948004	3L_17948004_SNP [dm3] 3L_17954904_SNP [dm6]	A	G	1.182e^-4	0.818	SYNONYMOUS_CODING Eip75B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9733513	2R_9733513_SNP [dm3] 2R_13846008_SNP [dm6]	A	T	1.182e^-4	0.818	UTR_5_PRIME Syngr UPSTREAM CG30484	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14154154	X_14154154_INS [dm3] X_14260121_INS [dm6]	T	TCTGAATCAAAAATGCTTGT...	1.188e^-4	0.818	INTERGENIC
3R	18784574	3R_18784574_SNP [dm3] 3R_22958852_SNP [dm6]	T	G	1.190e^-4	0.818	INTRON klg	TF binding site mE1_TFBS_cad
2R	11904748	2R_11904748_SNP [dm3] 2R_16017243_SNP [dm6]	T	A	1.190e^-4	0.818	UPSTREAM CG8399 & 1 other INTERGENIC
3R	21712801	3R_21712801_SNP [dm3] 3R_25887079_SNP [dm6]	A	G	1.199e^-4	0.818	INTRON SppL
2R	11904773	2R_11904773_SNP [dm3] 2R_16017268_SNP [dm6]	T	C	1.201e^-4	0.818	UPSTREAM CG8399 & 1 other INTERGENIC
2R	11904778	2R_11904778_SNP [dm3] 2R_16017273_SNP [dm6]	C	A	1.201e^-4	0.818	UPSTREAM CG8399 & 1 other INTERGENIC
2R	11904782	2R_11904782_MNP [dm3] 2R_16017277_MNP [dm6]	CCT	TAC	1.201e^-4	0.818	UPSTREAM CG8399 & 1 other INTERGENIC
2L	1501818	2L_1501818_SNP [dm3] 2L_1501818_SNP [dm6]	A	G	1.207e^-4	0.818	SYNONYMOUS_CODING CG7420 INTRON CR44064	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9223598	3R_9223598_SNP [dm3] 3R_13397876_SNP [dm6]	C	G	1.209e^-4	0.818	NON_SYNONYMOUS_CODING CG14377 UPSTREAM CG14374 DOWNSTREAM CG9796
2L	13071526	2L_13071526_SNP [dm3] 2L_13071526_SNP [dm6]	C	A	1.214e^-4	0.818	INTERGENIC
2L	17707178	2L_17707178_SNP [dm3] 2L_17707178_SNP [dm6]	C	T	1.216e^-4	0.818	INTRON CadN
3R	8986217	3R_8986217_SNP [dm3] 3R_13160495_SNP [dm6]	G	T	1.218e^-4	0.818	INTRON timeout
2R	1716364	2R_1716364_SNP [dm3] 2R_5828859_SNP [dm6]	T	G	1.236e^-4	0.818	INTRON dpr12	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17138803	2R_17138803_SNP [dm3] 2R_21251298_SNP [dm6]	A	T	1.238e^-4	0.818	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	17316815	3R_17316815_SNP [dm3] 3R_21491093_SNP [dm6]	A	G	1.241e^-4	0.818	INTERGENIC
X	13636152	X_13636152_SNP [dm3] X_13742119_SNP [dm6]	A	G	1.245e^-4	0.818	SYNONYMOUS_CODING Grip91 DOWNSTREAM CG11151
2L	2516820	2L_2516820_SNP [dm3] 2L_2516820_SNP [dm6]	C	T	1.249e^-4	0.818	DOWNSTREAM CG3528 INTERGENIC
2L	19136682	2L_19136682_SNP [dm3] 2L_19136682_SNP [dm6]	A	C	1.254e^-4	0.818	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12929607	3L_12929607_SNP [dm3] 3L_12936507_SNP [dm6]	C	G	1.254e^-4	0.818	INTERGENIC
2L	5909381	2L_5909381_SNP [dm3] 2L_5909381_SNP [dm6]	G	A	1.260e^-4	0.818	SYNONYMOUS_CODING CG14000 INTRON bchs
2R	11899588	2R_11899588_SNP [dm3] 2R_16012083_SNP [dm6]	T	A	1.261e^-4	0.818	UPSTREAM CG8388 INTRON CG8389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	11904766	2R_11904766_SNP [dm3] 2R_16017261_SNP [dm6]	G	T	1.264e^-4	0.818	UPSTREAM CG8399 & 1 other INTERGENIC
2L	3819600	2L_3819600_SNP [dm3] 2L_3819600_SNP [dm6]	A	G	1.266e^-4	0.818	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14154208	X_14154208_SNP [dm3] X_14260175_SNP [dm6]	C	A	1.267e^-4	0.818	INTERGENIC
2L	14423871	2L_14423871_DEL [dm3] 2L_14423871_DEL [dm6]	TGT	T	1.272e^-4	0.818	DOWNSTREAM Cpr35B INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8092306	2R_8092306_SNP [dm3] 2R_12204801_SNP [dm6]	C	T	1.284e^-4	0.818	INTERGENIC
2L	1552948	2L_1552948_SNP [dm3] 2L_1552948_SNP [dm6]	T	A	1.297e^-4	0.818	INTERGENIC
2R	8092269	2R_8092269_SNP [dm3] 2R_12204764_SNP [dm6]	T	A	1.299e^-4	0.818	INTERGENIC
3L	12770436	3L_12770436_SNP [dm3] 3L_12777336_SNP [dm6]	A	T	1.303e^-4	0.818	NON_SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14248414	3L_14248414_SNP [dm3] 3L_14255314_SNP [dm6]	C	A	1.307e^-4	0.818	INTERGENIC
2R	14881541	2R_14881541_SNP [dm3] 2R_18994036_SNP [dm6]	C	T	1.314e^-4	0.818	SYNONYMOUS_CODING tn UPSTREAM snoRNA:abba-a
2L	20762422	2L_20762422_SNP [dm3] 2L_20762422_SNP [dm6]	G	A	1.315e^-4	0.818	DOWNSTREAM dia INTRON dia	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10351364	2L_10351364_INS [dm3] 2L_10351364_INS [dm6]	T	TA	1.319e^-4	0.818	INTRON CG34367	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24052661	3R_24052661_SNP [dm3] 3R_28226939_SNP [dm6]	A	T	1.320e^-4	0.818	INTRON CG34354
X	5386024	X_5386024_SNP [dm3] X_5491991_SNP [dm6]	T	C	1.322e^-4	0.818	SYNONYMOUS_CODING SPR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6934474	3L_6934474_SNP [dm3] 3L_6941374_SNP [dm6]	T	A	1.326e^-4	0.818	INTERGENIC
2R	12068813	2R_12068813_SNP [dm3] 2R_16181308_SNP [dm6]	G	A	1.330e^-4	0.818	UTR_5_PRIME Lis-1 INTRON Lis-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16588170	2R_16588170_SNP [dm3] 2R_20700665_SNP [dm6]	G	T	1.332e^-4	0.818	INTRON dpr
3L	12543062	3L_12543062_SNP [dm3] 3L_12549962_SNP [dm6]	G	A	1.335e^-4	0.818	INTRON sowah
2L	11773832	2L_11773832_SNP [dm3] 2L_11773832_SNP [dm6]	G	A	1.341e^-4	0.818	INTERGENIC
3R	9188833	3R_9188833_SNP [dm3] 3R_13363111_SNP [dm6]	G	C	1.342e^-4	0.818	INTRON poly
2L	13568500	2L_13568500_SNP [dm3] 2L_13568500_SNP [dm6]	A	G	1.344e^-4	0.818	INTRON kuz
X	1680304	X_1680304_SNP [dm3] X_1786271_SNP [dm6]	C	A	1.346e^-4	0.818	UTR_3_PRIME Adar INTRON CG42666
2R	14668356	2R_14668356_SNP [dm3] 2R_18780851_SNP [dm6]	A	G	1.349e^-4	0.818	INTERGENIC
2R	13435460	2R_13435460_SNP [dm3] 2R_17547955_SNP [dm6]	A	G	1.351e^-4	0.818	UTR_5_PRIME MESR4 UPSTREAM MESR4 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	11904720	2R_11904720_SNP [dm3] 2R_16017215_SNP [dm6]	C	G	1.351e^-4	0.818	UPSTREAM CG8399 & 1 other INTERGENIC
X	4988820	X_4988820_SNP [dm3] X_5094787_SNP [dm6]	G	T	1.354e^-4	0.818	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6704836	3L_6704836_SNP [dm3] 3L_6711736_SNP [dm6]	A	C	1.359e^-4	0.818	INTERGENIC
2R	16920058	2R_16920058_SNP [dm3] 2R_21032553_SNP [dm6]	T	C	1.366e^-4	0.818	INTERGENIC
2L	13940377	2L_13940377_SNP [dm3] 2L_13940377_SNP [dm6]	T	A	1.371e^-4	0.818	INTRON Ance-3
X	11526243	X_11526243_SNP [dm3] X_11632210_SNP [dm6]	G	A	1.377e^-4	0.818	INTRON Ptp10D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8539407	X_8539407_SNP [dm3] X_8645374_SNP [dm6]	A	T	1.384e^-4	0.818	INTRON oc
2R	8090624	2R_8090624_SNP [dm3] 2R_12203119_SNP [dm6]	G	A	1.389e^-4	0.818	INTERGENIC
3L	6793814	3L_6793814_SNP [dm3] 3L_6800714_SNP [dm6]	C	T	1.392e^-4	0.818	INTERGENIC
X	9830876	X_9830876_SNP [dm3] X_9936843_SNP [dm6]	G	A	1.392e^-4	0.818	INTERGENIC
2R	13132037	2R_13132037_SNP [dm3] 2R_17244532_SNP [dm6]	T	A	1.395e^-4	0.818	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9031455	3R_9031455_INS [dm3] 3R_13205733_INS [dm6]	C	CTACGG	1.397e^-4	0.818	INTERGENIC
X	3529474	X_3529474_INS [dm3] X_3635441_INS [dm6]	G	GGTTTGGAG	1.398e^-4	0.818	INTRON AstA-R1
3L	9757070	3L_9757070_SNP [dm3] 3L_9763970_SNP [dm6]	A	T	1.400e^-4	0.818	UTR_5_PRIME CG8177 INTRON CG8177	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	21409172	3L_21409172_SNP [dm3] 3L_21416072_SNP [dm6]	G	A	1.412e^-4	0.821	INTRON rgn
2L	11773588	2L_11773588_SNP [dm3] 2L_11773588_SNP [dm6]	T	A	1.414e^-4	0.821	INTERGENIC
2L	8827471	2L_8827471_SNP [dm3] 2L_8827471_SNP [dm6]	G	A	1.420e^-4	0.821	SYNONYMOUS_CODING SoxN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12391805	3L_12391805_SNP [dm3] 3L_12398705_SNP [dm6]	G	A	1.427e^-4	0.821	SPLICE_SITE_REGION CG32104 DOWNSTREAM Smyd4 INTRON CG32104	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	12123250	2L_12123250_SNP [dm3] 2L_12123250_SNP [dm6]	A	G	1.432e^-4	0.821	INTRON CG17211
2L	12123255	2L_12123255_SNP [dm3] 2L_12123255_SNP [dm6]	A	G	1.432e^-4	0.821	INTRON CG17211
3R	18936651	3R_18936651_SNP [dm3] 3R_23110929_SNP [dm6]	G	A	1.437e^-4	0.822	INTRON CG13830
2L	10405444	2L_10405444_SNP [dm3] 2L_10405444_SNP [dm6]	T	C	1.442e^-4	0.822	UPSTREAM Ir31a & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	19277830	2R_19277830_SNP [dm3] 2R_23390307_SNP [dm6]	G	T	1.461e^-4	0.823	SPLICE_SITE_REGION CG3530 SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11902344	2R_11902344_SNP [dm3] 2R_16014839_SNP [dm6]	T	A	1.476e^-4	0.823	UPSTREAM Rrp42 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	6334848	2L_6334848_SNP [dm3] 2L_6334848_SNP [dm6]	A	C	1.477e^-4	0.823	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12296143	X_12296143_SNP [dm3] X_12402110_SNP [dm6]	G	A	1.484e^-4	0.823	INTERGENIC
2R	19277419	2R_19277419_SNP [dm3] 2R_23389896_SNP [dm6]	G	A	1.497e^-4	0.823	SYNONYMOUS_CODING CG3530 DOWNSTREAM eIF2B-delta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12033493	2R_12033493_SNP [dm3] 2R_16145988_SNP [dm6]	A	C	1.498e^-4	0.823	UTR_3_PRIME Ext2 DOWNSTREAM Aats-cys
2L	15496445	2L_15496445_SNP [dm3] 2L_15496445_SNP [dm6]	C	A	1.499e^-4	0.823	INTERGENIC
3R	9069658	3R_9069658_SNP [dm3] 3R_13243936_SNP [dm6]	C	G	1.506e^-4	0.823	NON_SYNONYMOUS_CODING Ace
2L	4009240	2L_4009240_SNP [dm3] 2L_4009240_SNP [dm6]	T	C	1.511e^-4	0.823	DOWNSTREAM CG43774 INTERGENIC
2R	10035229	2R_10035229_SNP [dm3] 2R_14147724_SNP [dm6]	T	G	1.512e^-4	0.823	DOWNSTREAM Rcd1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	6280748	2L_6280748_SNP [dm3] 2L_6280748_SNP [dm6]	C	A	1.519e^-4	0.823	INTRON Ddr
2L	18433074	2L_18433074_SNP [dm3] 2L_18433074_SNP [dm6]	T	C	1.523e^-4	0.823	UPSTREAM CR44488 INTERGENIC
2L	4007915	2L_4007915_SNP [dm3] 2L_4007915_SNP [dm6]	T	A	1.525e^-4	0.823	SYNONYMOUS_CODING CG43773 UPSTREAM CG43774
2L	12498403	2L_12498403_SNP [dm3] 2L_12498403_SNP [dm6]	A	G	1.534e^-4	0.823	INTRON bun
2R	8078861	2R_8078861_SNP [dm3] 2R_12191356_SNP [dm6]	T	C	1.547e^-4	0.823	SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
2L	11409110	2L_11409110_SNP [dm3] 2L_11409110_SNP [dm6]	G	C	1.550e^-4	0.823	INTERGENIC	regulatory region REDfly_CRMs
2R	8077706	2R_8077706_SNP [dm3] 2R_12190201_SNP [dm6]	G	T	1.554e^-4	0.823	SYNONYMOUS_CODING Cyp6g2 UPSTREAM Cyp6t3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11904550	2R_11904550_SNP [dm3] 2R_16017045_SNP [dm6]	A	G	1.555e^-4	0.823	SYNONYMOUS_CODING CG8397 UPSTREAM CG8399 DOWNSTREAM Rrp42
2R	11904641	2R_11904641_SNP [dm3] 2R_16017136_SNP [dm6]	G	A	1.555e^-4	0.823	UTR_5_PRIME CG8397 UPSTREAM CG8399
X	18623427	X_18623427_SNP [dm3] X_18729394_SNP [dm6]	T	C	1.555e^-4	0.823	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7995313	2R_7995313_SNP [dm3] 2R_12107808_SNP [dm6]	G	T	1.556e^-4	0.823	INTRON jeb
2R	12887993	2R_12887993_SNP [dm3] 2R_17000488_SNP [dm6]	T	A	1.566e^-4	0.823	SYNONYMOUS_CODING ste24a UPSTREAM ste24b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3983785	2R_3983785_SNP [dm3] 2R_8096280_SNP [dm6]	T	C	1.571e^-4	0.823	DOWNSTREAM CG8712 INTRON CG8713
2L	14374152	2L_14374152_SNP [dm3] 2L_14374152_SNP [dm6]	C	A	1.573e^-4	0.823	INTERGENIC
2L	14843284	2L_14843284_SNP [dm3] 2L_14843284_SNP [dm6]	C	G	1.577e^-4	0.823	DOWNSTREAM CG42682 INTERGENIC
2R	12887939	2R_12887939_SNP [dm3] 2R_17000434_SNP [dm6]	A	T	1.579e^-4	0.823	SYNONYMOUS_CODING ste24a UPSTREAM ste24b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11745492	2R_11745492_SNP [dm3] 2R_15857987_SNP [dm6]	G	T	1.582e^-4	0.823	SYNONYMOUS_CODING Gpo-1 DOWNSTREAM CG12970
3L	687911	3L_687911_SNP [dm3] 3L_687911_SNP [dm6]	G	T	1.596e^-4	0.823	UTR_5_PRIME CG3344 DOWNSTREAM CG32483
2L	14635405	2L_14635405_SNP [dm3] 2L_14635405_SNP [dm6]	C	G	1.596e^-4	0.823	INTRON osp
3L	13352941	3L_13352941_SNP [dm3] 3L_13359841_SNP [dm6]	A	G	1.599e^-4	0.823	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14373729	3L_14373729_DEL [dm3] 3L_14380629_DEL [dm6]	GG	G	1.601e^-4	0.823	INTERGENIC
2L	18908031	2L_18908031_SNP [dm3] 2L_18908031_SNP [dm6]	G	A	1.604e^-4	0.823	INTERGENIC
X	9830877	X_9830877_SNP [dm3] X_9936844_SNP [dm6]	C	T	1.607e^-4	0.823	INTERGENIC
3R	11469548	3R_11469548_SNP [dm3] 3R_15643826_SNP [dm6]	A	C	1.610e^-4	0.823	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19679321	2L_19679321_SNP [dm3] 2L_19679321_SNP [dm6]	G	C	1.610e^-4	0.823	INTRON Lar
2L	8836775	2L_8836775_SNP [dm3] 2L_8836775_SNP [dm6]	A	G	1.611e^-4	0.823	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	13766866	3R_13766866_SNP [dm3] 3R_17941144_SNP [dm6]	A	G	1.625e^-4	0.823	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8091180	2R_8091180_SNP [dm3] 2R_12203675_SNP [dm6]	C	A	1.629e^-4	0.823	INTERGENIC
2R	8100454	2R_8100454_SNP [dm3] 2R_12212949_SNP [dm6]	G	T	1.642e^-4	0.823	UPSTREAM Sr-CII INTERGENIC
3R	13766702	3R_13766702_SNP [dm3] 3R_17940980_SNP [dm6]	T	A	1.645e^-4	0.823	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18531873	2R_18531873_SNP [dm3] 2R_22644368_SNP [dm6]	T	G	1.654e^-4	0.823	UPSTREAM Ugt58Fa DOWNSTREAM CG2852 INTERGENIC
2R	10071320	2R_10071320_INS [dm3] 2R_14183815_INS [dm6]	G	GG	1.660e^-4	0.823	DOWNSTREAM cg INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14305181	X_14305181_INS [dm3] X_14411148_INS [dm6]	A	AA	1.665e^-4	0.823	INTRON dpr8
2R	16842854	2R_16842854_SNP [dm3] 2R_20955349_SNP [dm6]	A	G	1.675e^-4	0.823	SYNONYMOUS_CODING hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9188801	3R_9188801_INS [dm3] 3R_13363079_INS [dm6]	T	TT	1.675e^-4	0.823	INTRON poly
2L	20769767	2L_20769767_SNP [dm3] 2L_20769767_SNP [dm6]	T	A	1.679e^-4	0.823	UPSTREAM cad INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14299334	3R_14299334_SNP [dm3] 3R_18473612_SNP [dm6]	A	G	1.680e^-4	0.823	INTRON fru	TF binding site BDTNP1_TFBS_dl
3L	5523835	3L_5523835_SNP [dm3] 3L_5530735_SNP [dm6]	T	C	1.684e^-4	0.823	INTERGENIC
2L	13802907	2L_13802907_DEL [dm3] 2L_13802907_DEL [dm6]	AATCTAGTTTTCTGTGT...	A	1.689e^-4	0.823	UPSTREAM CAH1 INTERGENIC
2L	11409116	2L_11409116_SNP [dm3] 2L_11409116_SNP [dm6]	A	G	1.690e^-4	0.823	INTERGENIC	regulatory region REDfly_CRMs
2L	11409135	2L_11409135_DEL [dm3] 2L_11409135_DEL [dm6]	TG	A	1.690e^-4	0.823	INTERGENIC	regulatory region REDfly_CRMs
2L	11409164	2L_11409164_SNP [dm3] 2L_11409164_SNP [dm6]	A	G	1.690e^-4	0.823	INTERGENIC	regulatory region REDfly_CRMs
2L	11409205	2L_11409205_SNP [dm3] 2L_11409205_SNP [dm6]	C	T	1.690e^-4	0.823	INTERGENIC	regulatory region REDfly_CRMs
2L	11765109	2L_11765109_SNP [dm3] 2L_11765109_SNP [dm6]	G	A	1.700e^-4	0.823	INTERGENIC
2L	17707181	2L_17707181_SNP [dm3] 2L_17707181_SNP [dm6]	T	C	1.701e^-4	0.823	INTRON CadN
2R	9737788	2R_9737788_SNP [dm3] 2R_13850283_SNP [dm6]	T	C	1.705e^-4	0.823	SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
2R	19138670	2R_19138670_SNP [dm3] 2R_23251147_SNP [dm6]	A	G	1.706e^-4	0.823	INTERGENIC
X	14154213	X_14154213_SNP [dm3] X_14260180_SNP [dm6]	A	T	1.715e^-4	0.823	INTERGENIC
2R	14148581	2R_14148581_SNP [dm3] 2R_18261076_SNP [dm6]	C	T	1.716e^-4	0.823	INTERGENIC
2L	8822444	2L_8822444_SNP [dm3] 2L_8822444_SNP [dm6]	C	T	1.719e^-4	0.823	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13351866	X_13351866_SNP [dm3] X_13457833_SNP [dm6]	T	C	1.722e^-4	0.823	UPSTREAM CG34324 INTRON Neto
2L	11409091	2L_11409091_DEL [dm3] 2L_11409091_DEL [dm6]	TGCT	T	1.725e^-4	0.823	INTERGENIC	regulatory region REDfly_CRMs
2L	11409098	2L_11409098_DEL [dm3] 2L_11409098_DEL [dm6]	TGTCAGGC	T	1.725e^-4	0.823	INTERGENIC	regulatory region REDfly_CRMs
3R	13766799	3R_13766799_INS [dm3] 3R_17941077_INS [dm6]	A	AA	1.725e^-4	0.823	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9965324	2L_9965324_SNP [dm3] 2L_9965324_SNP [dm6]	T	A	1.737e^-4	0.825	INTRON Dref	TF binding site mE1_TFBS_sens
2R	8900629	2R_8900629_SNP [dm3] 2R_13013124_SNP [dm6]	A	T	1.737e^-4	0.825	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	11409107	2L_11409107_SNP [dm3] 2L_11409107_SNP [dm6]	G	A	1.754e^-4	0.831	INTERGENIC	regulatory region REDfly_CRMs
3L	13047177	3L_13047177_SNP [dm3] 3L_13054077_SNP [dm6]	T	C	1.767e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3207236	3L_3207236_SNP [dm3] 3L_3207236_SNP [dm6]	G	C	1.772e^-4	0.833	SYNONYMOUS_CODING CG32269 UTR_3_PRIME CG32270 UPSTREAM CG33160 INTRON gry	TF binding site mE1_TFBS_cad
3L	12543075	3L_12543075_SNP [dm3] 3L_12549975_SNP [dm6]	G	A	1.777e^-4	0.833	INTRON sowah
2R	14191569	2R_14191569_INS [dm3] 2R_18304064_INS [dm6]	A	AA	1.780e^-4	0.833	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	2331592	2L_2331592_SNP [dm3] 2L_2331592_SNP [dm6]	C	T	1.780e^-4	0.833	INTRON CG9967 & 1 other
3L	9066184	3L_9066184_SNP [dm3] 3L_9073084_SNP [dm6]	A	C	1.803e^-4	0.841	UPSTREAM CG4942 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Ubx
3L	4159861	3L_4159861_SNP [dm3] 3L_4159861_SNP [dm6]	C	A	1.819e^-4	0.844	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	8912437	3L_8912437_SNP [dm3] 3L_8919337_SNP [dm6]	T	C	1.820e^-4	0.844	INTRON Tsp66E
2R	19263504	2R_19263504_SNP [dm3] 2R_23375981_SNP [dm6]	C	A	1.825e^-4	0.844	INTRON Golgin245	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	3962756	X_3962756_SNP [dm3] X_4068723_SNP [dm6]	T	C	1.829e^-4	0.844	INTERGENIC
2R	12888110	2R_12888110_SNP [dm3] 2R_17000605_SNP [dm6]	C	A	1.837e^-4	0.844	SYNONYMOUS_CODING ste24a UPSTREAM ste24b	TF binding site mE1_TFBS_sens
2L	7055339	2L_7055339_SNP [dm3] 2L_7055339_SNP [dm6]	T	C	1.838e^-4	0.844	UTR_3_PRIME milt UPSTREAM Mnn1 DOWNSTREAM milt	TF binding site BDTNP1_TFBS_dl
2L	1554948	2L_1554948_SNP [dm3] 2L_1554948_SNP [dm6]	C	T	1.845e^-4	0.844	UPSTREAM haf INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14883274	2R_14883274_SNP [dm3] 2R_18995769_SNP [dm6]	T	G	1.845e^-4	0.844	DOWNSTREAM snoRNA:abba-a INTRON tn
2R	14140126	2R_14140126_SNP [dm3] 2R_18252621_SNP [dm6]	A	G	1.851e^-4	0.845	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7449682	2L_7449682_SNP [dm3] 2L_7449682_SNP [dm6]	A	T	1.861e^-4	0.847	UTR_5_PRIME santa-maria INTRON santa-maria
3L	16019083	3L_16019083_SNP [dm3] 3L_16025983_SNP [dm6]	G	T	1.874e^-4	0.85	INTRON Notum	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8091164	2R_8091164_SNP [dm3] 2R_12203659_SNP [dm6]	G	A	1.880e^-4	0.85	INTERGENIC
2L	16551178	2L_16551178_SNP [dm3] 2L_16551178_SNP [dm6]	T	G	1.885e^-4	0.85	INTRON CG42389
2R	19278570	2R_19278570_SNP [dm3] 2R_23391047_SNP [dm6]	G	A	1.893e^-4	0.85	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9124849	3R_9124849_SNP [dm3] 3R_13299127_SNP [dm6]	C	A	1.896e^-4	0.85	SYNONYMOUS_CODING CG8774 UTR_5_PRIME CG8774 DOWNSTREAM CG8773	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	16996027	2L_16996027_INS [dm3] 2L_16996027_INS [dm6]	G	GG	1.899e^-4	0.85	INTERGENIC
2L	14628324	2L_14628324_SNP [dm3] 2L_14628324_SNP [dm6]	C	A	1.900e^-4	0.85	INTRON osp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6648439	2L_6648439_SNP [dm3] 2L_6648439_SNP [dm6]	T	A	1.903e^-4	0.85	UTR_5_PRIME CG31635 UPSTREAM CG31635 & 1 other INTRON CG31635	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	4098933	2R_4098933_SNP [dm3] 2R_8211428_SNP [dm6]	T	C	1.913e^-4	0.851	INTRON LRP1	TF binding site mE1_TFBS_cad
2L	12097206	2L_12097206_SNP [dm3] 2L_12097206_SNP [dm6]	G	C	1.916e^-4	0.851	NON_SYNONYMOUS_CODING Mt2 UPSTREAM CG6712 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	7455261	X_7455261_SNP [dm3] X_7561228_SNP [dm6]	T	C	1.931e^-4	0.855	INTERGENIC
3R	9069659	3R_9069659_SNP [dm3] 3R_13243937_SNP [dm6]	C	T	1.936e^-4	0.855	SYNONYMOUS_CODING Ace
X	18623440	X_18623440_SNP [dm3] X_18729407_SNP [dm6]	G	A	1.941e^-4	0.855	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14700579	2R_14700579_SNP [dm3] 2R_18813074_SNP [dm6]	T	A	1.942e^-4	0.855	INTRON CG15096
2R	8781235	2R_8781235_SNP [dm3] 2R_12893730_SNP [dm6]	G	T	1.953e^-4	0.858	INTRON vg
X	1674533	X_1674533_SNP [dm3] X_1780500_SNP [dm6]	G	A	1.964e^-4	0.861	SYNONYMOUS_CODING Adar UTR_3_PRIME Adar INTRON CG42666
2L	19249707	2L_19249707_SNP [dm3] 2L_19249707_SNP [dm6]	G	A	1.979e^-4	0.865	INTERGENIC
2L	12611304	2L_12611304_SNP [dm3] 2L_12611304_SNP [dm6]	T	G	1.989e^-4	0.866	NON_SYNONYMOUS_CODING Ref2 INTRON nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
X	5575228	X_5575228_SNP [dm3] X_5681195_SNP [dm6]	C	G	1.997e^-4	0.866	INTRON CR44958 & 1 other
2L	12365747	2L_12365747_SNP [dm3] 2L_12365747_SNP [dm6]	T	C	2.002e^-4	0.866	UPSTREAM bru-2 INTRON bru-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	14267216	3R_14267216_SNP [dm3] 3R_18441494_SNP [dm6]	A	G	2.003e^-4	0.866	INTRON fru
2L	13268137	2L_13268137_SNP [dm3] 2L_13268137_SNP [dm6]	C	T	2.009e^-4	0.866	INTRON CG44085
2R	16920100	2R_16920100_SNP [dm3] 2R_21032595_SNP [dm6]	G	A	2.028e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	27058770	3R_27058770_SNP [dm3] 3R_31233048_SNP [dm6]	T	C	2.030e^-4	0.866	NON_SYNONYMOUS_CODING CG15564 UPSTREAM CG15563	TF binding site mE1_TFBS_chinmo
2L	14337393	2L_14337393_SNP [dm3] 2L_14337393_SNP [dm6]	C	A	2.034e^-4	0.866	UPSTREAM CG15286 INTRON CG33090
2R	15734224	2R_15734224_INS [dm3] 2R_19846719_INS [dm6]	T	TGGT	2.038e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20527710	3L_20527710_INS [dm3] 3L_20534610_INS [dm6]	C	CC	2.038e^-4	0.866	INTRON Rcd2 & 1 other
X	1676704	X_1676704_SNP [dm3] X_1782671_SNP [dm6]	A	C	2.038e^-4	0.866	INTRON CG42666 & 1 other
3R	9353314	3R_9353314_SNP [dm3] 3R_13527592_SNP [dm6]	T	C	2.040e^-4	0.866	INTERGENIC
3R	9037591	3R_9037591_SNP [dm3] 3R_13211869_SNP [dm6]	A	G	2.041e^-4	0.866	INTRON CG8483
2R	8105220	2R_8105220_SNP [dm3] 2R_12217715_SNP [dm6]	G	A	2.048e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_inv
2L	8813153	2L_8813153_SNP [dm3] 2L_8813153_SNP [dm6]	A	T	2.066e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_cad
3L	5518333	3L_5518333_SNP [dm3] 3L_5525233_SNP [dm6]	G	T	2.082e^-4	0.875	INTRON Lkr
3R	25256581	3R_25256581_SNP [dm3] 3R_29430859_SNP [dm6]	G	A	2.084e^-4	0.875	INTRON Ptp99A
2R	17138809	2R_17138809_SNP [dm3] 2R_21251304_SNP [dm6]	T	A	2.089e^-4	0.875	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	14374726	2L_14374726_SNP [dm3] 2L_14374726_SNP [dm6]	G	A	2.091e^-4	0.875	INTERGENIC
2R	17138800	2R_17138800_SNP [dm3] 2R_21251295_SNP [dm6]	A	G	2.098e^-4	0.876	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	5914949	2L_5914949_SNP [dm3] 2L_5914949_SNP [dm6]	A	T	2.120e^-4	0.882	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
2R	13331324	2R_13331324_SNP [dm3] 2R_17443819_SNP [dm6]	G	T	2.121e^-4	0.882	INTRON EDTP	TF binding site BDTNP1_TFBS_dl
X	4988821	X_4988821_SNP [dm3] X_5094788_SNP [dm6]	A	C	2.128e^-4	0.883	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9033214	3R_9033214_SNP [dm3] 3R_13207492_SNP [dm6]	A	T	2.144e^-4	0.888	INTERGENIC
2R	9572576	2R_9572576_SNP [dm3] 2R_13685071_SNP [dm6]	T	G	2.164e^-4	0.893	INTRON fas
3L	12543058	3L_12543058_SNP [dm3] 3L_12549958_SNP [dm6]	A	T	2.167e^-4	0.893	INTRON sowah
3L	14367859	3L_14367859_SNP [dm3] 3L_14374759_SNP [dm6]	C	T	2.175e^-4	0.893	INTERGENIC
X	9691007	X_9691007_SNP [dm3] X_9796974_SNP [dm6]	T	A	2.176e^-4	0.893	INTRON CG32698
3L	4607241	3L_4607241_SNP [dm3] 3L_4607241_SNP [dm6]	C	A	2.186e^-4	0.893	INTRON Src64B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8077982	2R_8077982_SNP [dm3] 2R_12190477_SNP [dm6]	A	G	2.208e^-4	0.893	UPSTREAM Cyp6t3 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	1944518	2L_1944518_SNP [dm3] 2L_1944518_SNP [dm6]	A	C	2.214e^-4	0.893	DOWNSTREAM CG7337 & 1 other INTERGENIC
2R	8096106	2R_8096106_SNP [dm3] 2R_12208601_SNP [dm6]	A	G	2.217e^-4	0.893	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12611533	2L_12611533_SNP [dm3] 2L_12611533_SNP [dm6]	A	T	2.218e^-4	0.893	UPSTREAM Ref2 INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	10432357	2L_10432357_SNP [dm3] 2L_10432357_SNP [dm6]	C	A	2.229e^-4	0.893	SYNONYMOUS_CODING TfIIB DOWNSTREAM CG5337
3L	14248496	3L_14248496_SNP [dm3] 3L_14255396_SNP [dm6]	G	A	2.245e^-4	0.893	INTERGENIC
X	13740101	X_13740101_SNP [dm3] X_13846068_SNP [dm6]	C	A	2.252e^-4	0.893	UPSTREAM AMPdeam DOWNSTREAM mamo INTERGENIC
2R	16955244	2R_16955244_SNP [dm3] 2R_21067739_SNP [dm6]	A	T	2.253e^-4	0.893	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
2L	8826428	2L_8826428_SNP [dm3] 2L_8826428_SNP [dm6]	C	A	2.257e^-4	0.893	UTR_5_PRIME SoxN	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	1714034	2R_1714034_INS [dm3] 2R_5826529_INS [dm6]	G	GAATGG	2.266e^-4	0.893	INTRON dpr12	TF binding site mE1_TFBS_HSA
2R	7402643	2R_7402643_SNP [dm3] 2R_11515138_SNP [dm6]	C	A	2.271e^-4	0.893	INTERGENIC
2L	19120424	2L_19120424_SNP [dm3] 2L_19120424_SNP [dm6]	A	C	2.272e^-4	0.893	UPSTREAM Ddc DOWNSTREAM l_2_37Cc INTERGENIC	regulatory region REDfly_CRMs
2R	8090744	2R_8090744_SNP [dm3] 2R_12203239_SNP [dm6]	A	G	2.275e^-4	0.893	INTERGENIC
3R	9077555	3R_9077555_SNP [dm3] 3R_13251833_SNP [dm6]	G	T	2.288e^-4	0.893	INTRON Ace
3L	6933091	3L_6933091_INS [dm3] 3L_6939991_INS [dm6]	C	CTTGGGGA	2.297e^-4	0.893	UPSTREAM CR45412 INTERGENIC
2L	13363510	2L_13363510_SNP [dm3] 2L_13363510_SNP [dm6]	G	C	2.304e^-4	0.893	UTR_3_PRIME Nnp-1	TF binding site BDTNP1_TFBS_z
2R	17138902	2R_17138902_INS [dm3] 2R_21251397_INS [dm6]	T	TT	2.308e^-4	0.893	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	6109114	3R_6109114_SNP [dm3] 3R_10283392_SNP [dm6]	C	T	2.310e^-4	0.893	INTRON CG43143
2R	8103870	2R_8103870_SNP [dm3] 2R_12216365_SNP [dm6]	A	T	2.314e^-4	0.893	INTERGENIC
2L	9646948	2L_9646948_SNP [dm3] 2L_9646948_SNP [dm6]	A	C	2.323e^-4	0.893	SPLICE_SITE_REGION Apoltp INTRON Apoltp
2L	9808105	2L_9808105_SNP [dm3] 2L_9808105_SNP [dm6]	T	A	2.326e^-4	0.893	INTRON nAChRalpha6
3R	26792211	3R_26792211_DEL [dm3] 3R_30966489_DEL [dm6]	GG	G	2.336e^-4	0.893	INTERGENIC
2L	19204190	2L_19204190_SNP [dm3] 2L_19204190_SNP [dm6]	T	C	2.337e^-4	0.893	INTRON drl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
X	14881637	X_14881637_SNP [dm3] X_14987604_SNP [dm6]	A	G	2.337e^-4	0.893	INTRON eag	TF binding site BDTNP1_TFBS_dl
3R	23390498	3R_23390498_SNP [dm3] 3R_27564776_SNP [dm6]	A	C	2.341e^-4	0.893	UTR_3_PRIME wdb DOWNSTREAM wdb
2R	10637595	2R_10637595_SNP [dm3] 2R_14750090_SNP [dm6]	T	A	2.344e^-4	0.893	UTR_3_PRIME AttB DOWNSTREAM Rpn6 & 1 other
2R	11174776	2R_11174776_SNP [dm3] 2R_15287271_SNP [dm6]	A	T	2.346e^-4	0.893	UPSTREAM Trpm INTRON Trpm
2R	10535577	2R_10535577_SNP [dm3] 2R_14648072_SNP [dm6]	C	A	2.351e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1414170	3L_1414170_SNP [dm3] 3L_1414170_SNP [dm6]	T	G	2.356e^-4	0.893	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
2R	8090760	2R_8090760_SNP [dm3] 2R_12203255_SNP [dm6]	C	T	2.363e^-4	0.893	INTERGENIC
2R	19132875	2R_19132875_SNP [dm3] 2R_23245352_SNP [dm6]	A	G	2.365e^-4	0.893	UTR_5_PRIME yip3
2L	8979454	2L_8979454_SNP [dm3] 2L_8979454_SNP [dm6]	A	G	2.368e^-4	0.893	INTRON CG13101
3R	9188796	3R_9188796_SNP [dm3] 3R_13363074_SNP [dm6]	G	A	2.369e^-4	0.893	INTRON poly
2L	3831374	2L_3831374_SNP [dm3] 2L_3831374_SNP [dm6]	A	G	2.372e^-4	0.893	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	13594123	3L_13594123_SNP [dm3] 3L_13601023_SNP [dm6]	G	A	2.372e^-4	0.893	INTRON bru-3
2R	8092572	2R_8092572_SNP [dm3] 2R_12205067_SNP [dm6]	C	T	2.372e^-4	0.893	INTERGENIC
2L	14243247	2L_14243247_SNP [dm3] 2L_14243247_SNP [dm6]	C	T	2.378e^-4	0.893	INTERGENIC
3R	19626624	3R_19626624_SNP [dm3] 3R_23800902_SNP [dm6]	A	T	2.384e^-4	0.893	UTR_3_PRIME mbc DOWNSTREAM CG33111	TF binding site mE1_TFBS_HSA
2R	14881304	2R_14881304_SNP [dm3] 2R_18993799_SNP [dm6]	G	C	2.385e^-4	0.893	UPSTREAM snoRNA:abba-a INTRON tn
2R	8090739	2R_8090739_SNP [dm3] 2R_12203234_SNP [dm6]	G	A	2.387e^-4	0.893	INTERGENIC
X	14154204	X_14154204_SNP [dm3] X_14260171_SNP [dm6]	T	G	2.388e^-4	0.893	INTERGENIC
X	13825555	X_13825555_SNP [dm3] X_13931522_SNP [dm6]	A	G	2.400e^-4	0.893	INTRON mamo
2L	5907343	2L_5907343_SNP [dm3] 2L_5907343_SNP [dm6]	T	C	2.401e^-4	0.893	INTRON bchs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	9162370	3R_9162370_SNP [dm3] 3R_13336648_SNP [dm6]	T	C	2.402e^-4	0.893	INTERGENIC
3R	9216135	3R_9216135_SNP [dm3] 3R_13390413_SNP [dm6]	T	A	2.406e^-4	0.893	INTRON CCHa2
2R	16920101	2R_16920101_SNP [dm3] 2R_21032596_SNP [dm6]	G	A	2.407e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17138839	2R_17138839_SNP [dm3] 2R_21251334_SNP [dm6]	T	C	2.408e^-4	0.893	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	3207179	3L_3207179_SNP [dm3] 3L_3207179_SNP [dm6]	T	G	2.411e^-4	0.893	SYNONYMOUS_CODING CG32269 UTR_3_PRIME CG32270 UPSTREAM CG33160 INTRON gry	TF binding site mE1_TFBS_cad
3R	9114873	3R_9114873_DEL [dm3] 3R_13289151_DEL [dm6]	AAGTGGA	A	2.420e^-4	0.895	UPSTREAM CG15887 INTERGENIC
2R	15118032	2R_15118032_SNP [dm3] 2R_19230527_SNP [dm6]	A	T	2.437e^-4	0.898	INTRON cora	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	17309194	2R_17309194_SNP [dm3] 2R_21421689_SNP [dm6]	A	T	2.438e^-4	0.898	INTRON Sdc
2R	17138837	2R_17138837_SNP [dm3] 2R_21251332_SNP [dm6]	C	A	2.443e^-4	0.898	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	17580804	2L_17580804_SNP [dm3] 2L_17580804_SNP [dm6]	T	A	2.446e^-4	0.898	DOWNSTREAM CR45698 INTERGENIC
3L	12543079	3L_12543079_SNP [dm3] 3L_12549979_SNP [dm6]	G	A	2.457e^-4	0.899	INTRON sowah
3R	9078332	3R_9078332_SNP [dm3] 3R_13252610_SNP [dm6]	C	G	2.463e^-4	0.899	INTRON Ace
3R	9162387	3R_9162387_SNP [dm3] 3R_13336665_SNP [dm6]	A	G	2.464e^-4	0.899	INTERGENIC
2L	13568336	2L_13568336_SNP [dm3] 2L_13568336_SNP [dm6]	C	A	2.469e^-4	0.899	INTRON kuz
3L	6474919	3L_6474919_SNP [dm3] 3L_6481819_SNP [dm6]	T	C	2.487e^-4	0.904	INTRON CG42747
2L	17701979	2L_17701979_SNP [dm3] 2L_17701979_SNP [dm6]	A	T	2.495e^-4	0.905	INTRON CadN	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	1553996	2L_1553996_SNP [dm3] 2L_1553996_SNP [dm6]	C	G	2.501e^-4	0.905	INTERGENIC
2L	5920032	2L_5920032_SNP [dm3] 2L_5920032_SNP [dm6]	C	A	2.506e^-4	0.905	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
2L	1553791	2L_1553791_SNP [dm3] 2L_1553791_SNP [dm6]	G	A	2.512e^-4	0.906	INTERGENIC
3L	14248408	3L_14248408_SNP [dm3] 3L_14255308_SNP [dm6]	G	A	2.518e^-4	0.906	INTERGENIC
2L	12123296	2L_12123296_DEL [dm3] 2L_12123296_DEL [dm6]	GAAGTCTAGCATCGTTTCTT...	T	2.524e^-4	0.907	INTRON CG17211
2L	10287987	2L_10287987_SNP [dm3] 2L_10287987_SNP [dm6]	T	A	2.542e^-4	0.909	SPLICE_SITE_REGION CG5604 INTRON CG5604
2R	11745180	2R_11745180_SNP [dm3] 2R_15857675_SNP [dm6]	G	A	2.552e^-4	0.909	DOWNSTREAM Gpo-1 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9732503	2R_9732503_SNP [dm3] 2R_13844998_SNP [dm6]	C	G	2.564e^-4	0.909	INTRON Syngr
2R	13331283	2R_13331283_SNP [dm3] 2R_17443778_SNP [dm6]	A	T	2.587e^-4	0.909	INTRON EDTP	TF binding site BDTNP1_TFBS_dl
X	14884147	X_14884147_SNP [dm3] X_14990114_SNP [dm6]	T	C	2.590e^-4	0.909	INTRON eag
2R	10535602	2R_10535602_SNP [dm3] 2R_14648097_SNP [dm6]	T	A	2.591e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	17431869	X_17431869_DEL [dm3] X_17537836_DEL [dm6]	CC	C	2.598e^-4	0.909	INTRON CG43658
2R	2972964	2R_2972964_SNP [dm3] 2R_7085459_SNP [dm6]	G	C	2.606e^-4	0.909	UPSTREAM esn INTERGENIC
3L	14367878	3L_14367878_SNP [dm3] 3L_14374778_SNP [dm6]	A	C	2.624e^-4	0.909	INTERGENIC
2R	15117539	2R_15117539_SNP [dm3] 2R_19230034_SNP [dm6]	T	A	2.624e^-4	0.909	INTRON cora	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	26119050	3R_26119050_SNP [dm3] 3R_30293328_SNP [dm6]	T	G	2.628e^-4	0.909	INTRON hdc
2L	1675420	2L_1675420_SNP [dm3] 2L_1675420_SNP [dm6]	T	C	2.628e^-4	0.909	INTRON chinmo
3L	14103432	3L_14103432_SNP [dm3] 3L_14110332_SNP [dm6]	T	C	2.637e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	8812689	2L_8812689_SNP [dm3] 2L_8812689_SNP [dm6]	A	G	2.639e^-4	0.909	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17715989	2L_17715989_SNP [dm3] 2L_17715989_SNP [dm6]	C	T	2.647e^-4	0.909	INTRON CadN	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	12767343	2R_12767343_SNP [dm3] 2R_16879838_SNP [dm6]	C	T	2.648e^-4	0.909	UPSTREAM CG6472 INTRON CG8910
3L	13049921	3L_13049921_SNP [dm3] 3L_13056821_SNP [dm6]	C	G	2.650e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6093337	X_6093337_SNP [dm3] X_6199304_SNP [dm6]	C	T	2.661e^-4	0.909	SYNONYMOUS_CODING CG43090 UPSTREAM CG32751 DOWNSTREAM vanin-like
X	255438	X_255438_SNP [dm3] X_361405_SNP [dm6]	G	T	2.668e^-4	0.909	UPSTREAM yar DOWNSTREAM y INTRON CG32816	regulatory region FlyBase REDfly_CRMs
3R	23889935	3R_23889935_SNP [dm3] 3R_28064213_SNP [dm6]	C	T	2.671e^-4	0.909	INTRON CG34362
2L	19833249	2L_19833249_SNP [dm3] 2L_19833249_SNP [dm6]	T	C	2.681e^-4	0.909	INTRON sick
3R	18784568	3R_18784568_SNP [dm3] 3R_22958846_SNP [dm6]	T	A	2.683e^-4	0.909	INTRON klg	TF binding site mE1_TFBS_cad
2L	17350223	2L_17350223_SNP [dm3] 2L_17350223_SNP [dm6]	G	C	2.689e^-4	0.909	INTERGENIC
2L	12780396	2L_12780396_SNP [dm3] 2L_12780396_SNP [dm6]	G	C	2.691e^-4	0.909	INTERGENIC
2R	9731961	2R_9731961_SNP [dm3] 2R_13844456_SNP [dm6]	G	A	2.701e^-4	0.909	INTRON Syngr
3R	9196104	3R_9196104_SNP [dm3] 3R_13370382_SNP [dm6]	G	A	2.701e^-4	0.909	SYNONYMOUS_CODING Lip3 DOWNSTREAM CheA87a
2L	10133277	2L_10133277_SNP [dm3] 2L_10133277_SNP [dm6]	A	T	2.702e^-4	0.909	INTRON CG44153
2L	13070720	2L_13070720_SNP [dm3] 2L_13070720_SNP [dm6]	T	C	2.702e^-4	0.909	INTERGENIC
2L	6639822	2L_6639822_SNP [dm3] 2L_6639822_SNP [dm6]	G	A	2.706e^-4	0.909	NON_SYNONYMOUS_CODING CG31635	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11888908	2R_11888908_SNP [dm3] 2R_16001403_SNP [dm6]	T	A	2.714e^-4	0.909	UTR_5_PRIME CG8370 UPSTREAM CG8370 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	17138835	2R_17138835_SNP [dm3] 2R_21251330_SNP [dm6]	C	A	2.718e^-4	0.909	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	5004269	2L_5004269_SNP [dm3] 2L_5004269_SNP [dm6]	A	T	2.724e^-4	0.909	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk
2L	5004360	2L_5004360_SNP [dm3] 2L_5004360_SNP [dm6]	A	G	2.726e^-4	0.909	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_ttk
2L	8048908	2L_8048908_SNP [dm3] 2L_8048908_SNP [dm6]	C	T	2.727e^-4	0.909	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_sens
3L	6754331	3L_6754331_SNP [dm3] 3L_6761231_SNP [dm6]	C	T	2.729e^-4	0.909	UPSTREAM CG32392 INTRON CG32392
X	1680433	X_1680433_SNP [dm3] X_1786400_SNP [dm6]	G	C	2.733e^-4	0.909	UTR_3_PRIME Adar INTRON CG42666
2R	10075984	2R_10075984_SNP [dm3] 2R_14188479_SNP [dm6]	G	C	2.738e^-4	0.909	SYNONYMOUS_CODING CG30069
2R	16955201	2R_16955201_DEL [dm3] 2R_21067696_DEL [dm6]	TGAAATACAT	T	2.738e^-4	0.909	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
2R	13729154	2R_13729154_SNP [dm3] 2R_17841649_SNP [dm6]	G	T	2.745e^-4	0.909	UTR_3_PRIME grh DOWNSTREAM grh
2L	1544381	2L_1544381_SNP [dm3] 2L_1544381_SNP [dm6]	T	A	2.754e^-4	0.909	INTERGENIC
2L	10234362	2L_10234362_SNP [dm3] 2L_10234362_SNP [dm6]	G	A	2.765e^-4	0.909	UTR_3_PRIME eEF1delta DOWNSTREAM mthl15
3R	20396321	3R_20396321_SNP [dm3] 3R_24570599_SNP [dm6]	T	A	2.765e^-4	0.909	INTRON CG13624
X	878176	X_878176_SNP [dm3] X_984143_SNP [dm6]	T	G	2.766e^-4	0.909	INTERGENIC
3R	19890479	3R_19890479_SNP [dm3] 3R_24064757_SNP [dm6]	A	T	2.766e^-4	0.909	UTR_3_PRIME 4EHP INTRON 4EHP
3L	14914144	3L_14914144_SNP [dm3] 3L_14921044_SNP [dm6]	C	A	2.769e^-4	0.909	UPSTREAM DCX-EMAP INTRON DCX-EMAP	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	10351375	2L_10351375_SNP [dm3] 2L_10351375_SNP [dm6]	A	T	2.771e^-4	0.909	INTRON CG34367	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	15551960	X_15551960_SNP [dm3] X_15657927_SNP [dm6]	G	T	2.786e^-4	0.909	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	11407541	3L_11407541_SNP [dm3] 3L_11414441_SNP [dm6]	C	T	2.794e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	9779070	3L_9779070_SNP [dm3] 3L_9785970_SNP [dm6]	T	C	2.796e^-4	0.909	UTR_3_PRIME CG8177 DOWNSTREAM CG8177
3L	17949472	3L_17949472_SNP [dm3] 3L_17956372_SNP [dm6]	G	A	2.796e^-4	0.909	INTRON Eip75B	TF binding site mE1_TFBS_cad
2R	16929377	2R_16929377_DEL [dm3] 2R_21041872_DEL [dm6]	TCCATACA	G	2.810e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12123331	2L_12123331_SNP [dm3] 2L_12123331_SNP [dm6]	T	C	2.810e^-4	0.909	INTRON CG17211
2R	12887915	2R_12887915_SNP [dm3] 2R_17000410_SNP [dm6]	A	T	2.811e^-4	0.909	SYNONYMOUS_CODING ste24a UPSTREAM ste24b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17752026	2L_17752026_SNP [dm3] 2L_17752026_SNP [dm6]	C	A	2.811e^-4	0.909	UTR_5_PRIME CadN INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	3468679	X_3468679_SNP [dm3] X_3574646_SNP [dm6]	T	C	2.816e^-4	0.909	UTR_5_PRIME AstA-R1	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	9732004	2R_9732004_DEL [dm3] 2R_13844499_DEL [dm6]	AC	A	2.826e^-4	0.909	INTRON Syngr
2L	14628231	2L_14628231_SNP [dm3] 2L_14628231_SNP [dm6]	T	A	2.831e^-4	0.909	INTRON osp	TF binding site mE1_TFBS_HSA
2L	14033103	2L_14033103_SNP [dm3] 2L_14033103_SNP [dm6]	C	T	2.832e^-4	0.909	EXON CR45284
2R	12059530	2R_12059530_SNP [dm3] 2R_16172025_SNP [dm6]	T	C	2.837e^-4	0.909	INTRON Ptp52F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	10691928	2R_10691928_SNP [dm3] 2R_14804423_SNP [dm6]	C	T	2.842e^-4	0.909	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	9065936	3L_9065936_SNP [dm3] 3L_9072836_SNP [dm6]	A	G	2.846e^-4	0.909	UPSTREAM CG4942 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Ubx
3L	12543270	3L_12543270_SNP [dm3] 3L_12550170_SNP [dm6]	C	T	2.853e^-4	0.909	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13352039	X_13352039_SNP [dm3] X_13458006_SNP [dm6]	G	T	2.863e^-4	0.909	UPSTREAM CG34324 INTRON Neto
2L	4013413	2L_4013413_SNP [dm3] 2L_4013413_SNP [dm6]	C	A	2.863e^-4	0.909	INTERGENIC
3R	4446966	3R_4446966_SNP [dm3] 3R_8621244_SNP [dm6]	T	C	2.864e^-4	0.909	INTRON 5-HT2B
2L	8822044	2L_8822044_SNP [dm3] 2L_8822044_SNP [dm6]	A	C	2.866e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5739466	X_5739466_SNP [dm3] X_5845433_SNP [dm6]	G	A	2.878e^-4	0.909	SYNONYMOUS_CODING CG12729
2L	19207096	2L_19207096_SNP [dm3] 2L_19207096_SNP [dm6]	G	C	2.880e^-4	0.909	INTRON drl	TF binding site mE1_TFBS_cad
2L	6642796	2L_6642796_INS [dm3] 2L_6642796_INS [dm6]	T	TAAATGCCTTT...	2.894e^-4	0.909	INTRON CG31635
3R	16820974	3R_16820974_SNP [dm3] 3R_20995252_SNP [dm6]	C	T	2.905e^-4	0.909	INTRON Calx	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4958605	2L_4958605_SNP [dm3] 2L_4958605_SNP [dm6]	C	T	2.905e^-4	0.909	DOWNSTREAM Marcal1 INTRON CG34124	TF binding site mE1_TFBS_HSA
3R	9035867	3R_9035867_SNP [dm3] 3R_13210145_SNP [dm6]	C	T	2.908e^-4	0.909	SYNONYMOUS_CODING CG8483
2R	19820031	2R_19820031_SNP [dm3] 2R_23932508_SNP [dm6]	T	A	2.919e^-4	0.909	INTRON Ca-P60A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
2L	1505112	2L_1505112_SNP [dm3] 2L_1505112_SNP [dm6]	A	T	2.919e^-4	0.909	DOWNSTREAM CR44064 INTERGENIC
2R	8096002	2R_8096002_SNP [dm3] 2R_12208497_SNP [dm6]	C	A	2.924e^-4	0.909	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2R	15734135	2R_15734135_SNP [dm3] 2R_19846630_SNP [dm6]	G	A	2.933e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19197363	2R_19197363_SNP [dm3] 2R_23309840_SNP [dm6]	C	A	2.933e^-4	0.909	UPSTREAM Prosbeta5R1 INTERGENIC
2R	17138834	2R_17138834_SNP [dm3] 2R_21251329_SNP [dm6]	G	A	2.935e^-4	0.909	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	3034984	3L_3034984_SNP [dm3] 3L_3034984_SNP [dm6]	T	A	2.940e^-4	0.909	UPSTREAM CG2162 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9066120	3L_9066120_SNP [dm3] 3L_9073020_SNP [dm6]	G	A	2.952e^-4	0.909	UPSTREAM CG4942 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Ubx
2R	19244182	2R_19244182_SNP [dm3] 2R_23356659_SNP [dm6]	G	A	2.953e^-4	0.909	SYNONYMOUS_CODING CG3500 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	16643430	2R_16643430_SNP [dm3] 2R_20755925_SNP [dm6]	G	T	2.957e^-4	0.909	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
3L	13349801	3L_13349801_SNP [dm3] 3L_13356701_SNP [dm6]	A	G	2.971e^-4	0.909	INTRON Nplp2
2L	11409087	2L_11409087_SNP [dm3] 2L_11409087_SNP [dm6]	C	G	2.971e^-4	0.909	INTERGENIC	regulatory region REDfly_CRMs
3L	5377132	3L_5377132_SNP [dm3] 3L_5384032_SNP [dm6]	T	C	2.974e^-4	0.909	INTERGENIC
X	5402640	X_5402640_SNP [dm3] X_5508607_SNP [dm6]	C	A	2.978e^-4	0.909	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5218910	3L_5218910_SNP [dm3] 3L_5225810_SNP [dm6]	A	G	2.983e^-4	0.909	INTRON shep
3L	688465	3L_688465_SNP [dm3] 3L_688465_SNP [dm6]	G	C	2.986e^-4	0.909	UPSTREAM CG3344 DOWNSTREAM CG32483 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	13947860	2L_13947860_SNP [dm3] 2L_13947860_SNP [dm6]	A	G	2.989e^-4	0.909	UPSTREAM CG16884 INTRON Ance-3
2R	17101804	2R_17101804_SNP [dm3] 2R_21214299_SNP [dm6]	A	G	2.993e^-4	0.909	NON_SYNONYMOUS_CODING CG4302
3R	24302616	3R_24302616_SNP [dm3] 3R_28476894_SNP [dm6]	C	G	2.994e^-4	0.909	INTERGENIC
2R	4249951	2R_4249951_SNP [dm3] 2R_8362446_SNP [dm6]	T	C	2.998e^-4	0.909	UTR_3_PRIME whip UPSTREAM hubl & 1 other DOWNSTREAM cola & 1 other INTRON pdm3	TF binding site BDTNP1_TFBS_sna
2L	13568553	2L_13568553_SNP [dm3] 2L_13568553_SNP [dm6]	T	A	2.998e^-4	0.909	INTRON kuz
3R	18990903	3R_18990903_SNP [dm3] 3R_23165181_SNP [dm6]	G	T	3.002e^-4	0.909	INTERGENIC
X	2213276	X_2213276_SNP [dm3] X_2319243_SNP [dm6]	G	A	3.009e^-4	0.909	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9114901	3R_9114901_SNP [dm3] 3R_13289179_SNP [dm6]	C	G	3.015e^-4	0.909	UPSTREAM CG15887 INTERGENIC
2L	10351399	2L_10351399_SNP [dm3] 2L_10351399_SNP [dm6]	T	C	3.017e^-4	0.909	INTRON CG34367	TF binding site mE1_TFBS_inv
2R	16955172	2R_16955172_SNP [dm3] 2R_21067667_SNP [dm6]	T	G	3.017e^-4	0.909	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
3L	21407525	3L_21407525_SNP [dm3] 3L_21414425_SNP [dm6]	T	C	3.018e^-4	0.909	INTRON rgn
3R	16821132	3R_16821132_SNP [dm3] 3R_20995410_SNP [dm6]	C	G	3.021e^-4	0.909	INTRON Calx	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8093965	2R_8093965_SNP [dm3] 2R_12206460_SNP [dm6]	G	C	3.022e^-4	0.909	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	3525781	X_3525781_SNP [dm3] X_3631748_SNP [dm6]	A	T	3.027e^-4	0.909	INTRON AstA-R1
2R	8730985	2R_8730985_SNP [dm3] 2R_12843480_SNP [dm6]	G	A	3.030e^-4	0.909	SYNONYMOUS_CODING Or49b UPSTREAM Cyp9h1	TF binding site BDTNP1_TFBS_twi
2R	10013626	2R_10013626_SNP [dm3] 2R_14126121_SNP [dm6]	A	G	3.042e^-4	0.91	INTRON Prosap
3R	9125625	3R_9125625_SNP [dm3] 3R_13299903_SNP [dm6]	C	T	3.046e^-4	0.91	SPLICE_SITE_REGION CG8774 INTRON CG8774
2R	9732501	2R_9732501_SNP [dm3] 2R_13844996_SNP [dm6]	T	C	3.051e^-4	0.91	INTRON Syngr
3L	5636867	3L_5636867_SNP [dm3] 3L_5643767_SNP [dm6]	T	G	3.053e^-4	0.91	INTRON Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13458267	3R_13458267_SNP [dm3] 3R_17632545_SNP [dm6]	C	A	3.074e^-4	0.911	DOWNSTREAM tRNA:CR31573 INTRON CG43175
3L	11846079	3L_11846079_SNP [dm3] 3L_11852979_SNP [dm6]	G	C	3.080e^-4	0.911	INTRON CG44837
3R	25852528	3R_25852528_SNP [dm3] 3R_30026806_SNP [dm6]	T	A	3.089e^-4	0.911	UPSTREAM Axn INTRON Axn	TF binding site mE1_TFBS_HSA
X	20893684	X_20893684_SNP [dm3] X_21022657_SNP [dm6]	A	G	3.092e^-4	0.911	DOWNSTREAM r-cup INTERGENIC
2R	8731727	2R_8731727_SNP [dm3] 2R_12844222_SNP [dm6]	G	A	3.096e^-4	0.911	SYNONYMOUS_CODING Or49b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26581271	3R_26581271_SNP [dm3] 3R_30755549_SNP [dm6]	T	A	3.104e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1552951	2L_1552951_SNP [dm3] 2L_1552951_SNP [dm6]	A	T	3.113e^-4	0.911	INTERGENIC
2L	22068419	2L_22068419_SNP [dm3] 2L_22068419_SNP [dm6]	C	T	3.116e^-4	0.911	INTERGENIC
3L	14571724	3L_14571724_SNP [dm3] 3L_14578624_SNP [dm6]	C	G	3.122e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	12888107	2R_12888107_SNP [dm3] 2R_17000602_SNP [dm6]	T	C	3.128e^-4	0.911	SYNONYMOUS_CODING ste24a UPSTREAM ste24b	TF binding site mE1_TFBS_sens
2R	17438852	2R_17438852_SNP [dm3] 2R_21551347_SNP [dm6]	A	G	3.134e^-4	0.911	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16955273	2R_16955273_SNP [dm3] 2R_21067768_SNP [dm6]	C	T	3.135e^-4	0.911	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
2L	17530048	2L_17530048_SNP [dm3] 2L_17530048_SNP [dm6]	G	A	3.140e^-4	0.911	SYNONYMOUS_CODING CG15145 UPSTREAM CG15144	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17605709	3L_17605709_SNP [dm3] 3L_17612609_SNP [dm6]	A	C	3.141e^-4	0.911	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	15118029	2R_15118029_SNP [dm3] 2R_19230524_SNP [dm6]	T	C	3.145e^-4	0.911	INTRON cora	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	13019593	3L_13019593_SNP [dm3] 3L_13026493_SNP [dm6]	T	G	3.147e^-4	0.911	UPSTREAM Zmynd10 INTERGENIC	TF binding site mE1_TFBS_cad
2L	5908010	2L_5908010_SNP [dm3] 2L_5908010_SNP [dm6]	G	T	3.159e^-4	0.911	DOWNSTREAM CG14000 INTRON bchs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	13104056	2L_13104056_SNP [dm3] 2L_13104056_SNP [dm6]	G	C	3.160e^-4	0.911	UPSTREAM CR45461 INTERGENIC
3R	9035756	3R_9035756_DEL [dm3] 3R_13210034_DEL [dm6]	AATAATTAACATAATTA...	A	3.164e^-4	0.911	INTRON CG8483
3R	9675176	3R_9675176_SNP [dm3] 3R_13849454_SNP [dm6]	G	A	3.184e^-4	0.911	INTERGENIC
2R	6542847	2R_6542847_SNP [dm3] 2R_10655342_SNP [dm6]	G	C	3.184e^-4	0.911	INTERGENIC
2L	14448509	2L_14448509_SNP [dm3] 2L_14448509_SNP [dm6]	G	A	3.185e^-4	0.911	EXON CR45726	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8818424	2L_8818424_SNP [dm3] 2L_8818424_SNP [dm6]	G	T	3.188e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	19942671	2L_19942671_SNP [dm3] 2L_19942671_SNP [dm6]	C	T	3.188e^-4	0.911	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	12137452	2L_12137452_SNP [dm3] 2L_12137452_SNP [dm6]	A	C	3.189e^-4	0.911	UPSTREAM Gr33a INTERGENIC
2R	8084504	2R_8084504_SNP [dm3] 2R_12196999_SNP [dm6]	T	C	3.189e^-4	0.911	INTRON CG8858	TF binding site mE1_TFBS_cad
X	14873801	X_14873801_SNP [dm3] X_14979768_SNP [dm6]	C	T	3.189e^-4	0.911	INTRON eag
2L	1543848	2L_1543848_SNP [dm3] 2L_1543848_SNP [dm6]	A	C	3.191e^-4	0.911	INTERGENIC
X	14702006	X_14702006_SNP [dm3] X_14807973_SNP [dm6]	T	C	3.195e^-4	0.911	INTRON rut
2L	5805436	2L_5805436_SNP [dm3] 2L_5805436_SNP [dm6]	C	A	3.206e^-4	0.912	UTR_5_PRIME CG11034	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	14378394	2L_14378394_SNP [dm3] 2L_14378394_SNP [dm6]	T	A	3.211e^-4	0.912	UTR_3_PRIME ppk
X	3529524	X_3529524_SNP [dm3] X_3635491_SNP [dm6]	T	C	3.213e^-4	0.912	INTRON AstA-R1
3L	14248391	3L_14248391_SNP [dm3] 3L_14255291_SNP [dm6]	G	C	3.229e^-4	0.915	INTERGENIC
2R	19399886	2R_19399886_SNP [dm3] 2R_23512363_SNP [dm6]	A	G	3.239e^-4	0.916	UPSTREAM CG3906 INTERGENIC	TF binding site mE1_TFBS_cad
3L	14367882	3L_14367882_INS [dm3] 3L_14374782_INS [dm6]	C	CC	3.244e^-4	0.916	INTERGENIC
2R	11952741	2R_11952741_SNP [dm3] 2R_16065236_SNP [dm6]	T	G	3.250e^-4	0.917	DOWNSTREAM mir-137 INTERGENIC
2R	16876110	2R_16876110_SNP [dm3] 2R_20988605_SNP [dm6]	A	G	3.261e^-4	0.918	SYNONYMOUS_CODING CG3216	TF binding site mE1_TFBS_cad
2R	19262562	2R_19262562_SNP [dm3] 2R_23375039_SNP [dm6]	A	G	3.264e^-4	0.918	SYNONYMOUS_CODING Golgin245	TF binding site mE1_TFBS_cad
X	6093362	X_6093362_SNP [dm3] X_6199329_SNP [dm6]	A	G	3.304e^-4	0.924	NON_SYNONYMOUS_CODING CG43090 UPSTREAM CG32751 DOWNSTREAM vanin-like
3R	11464733	3R_11464733_SNP [dm3] 3R_15639011_SNP [dm6]	T	G	3.305e^-4	0.924	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	16048648	2R_16048648_SNP [dm3] 2R_20161143_SNP [dm6]	T	A	3.307e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8084645	2R_8084645_SNP [dm3] 2R_12197140_SNP [dm6]	G	A	3.316e^-4	0.924	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
X	14154195	X_14154195_SNP [dm3] X_14260162_SNP [dm6]	C	T	3.319e^-4	0.924	INTERGENIC
2L	5396829	2L_5396829_SNP [dm3] 2L_5396829_SNP [dm6]	G	A	3.321e^-4	0.924	INTERGENIC
2L	8561179	2L_8561179_SNP [dm3] 2L_8561179_SNP [dm6]	T	G	3.326e^-4	0.924	INTRON Sema-1a
2R	9737659	2R_9737659_SNP [dm3] 2R_13850154_SNP [dm6]	A	G	3.329e^-4	0.924	SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
2L	3464801	2L_3464801_SNP [dm3] 2L_3464801_SNP [dm6]	G	T	3.336e^-4	0.924	NON_SYNONYMOUS_CODING msl-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	8100000	2R_8100000_SNP [dm3] 2R_12212495_SNP [dm6]	G	A	3.343e^-4	0.924	UPSTREAM Sr-CII INTERGENIC
2L	19272731	2L_19272731_SNP [dm3] 2L_19272731_SNP [dm6]	A	C	3.347e^-4	0.924	INTRON CR44190
2R	15765552	2R_15765552_SNP [dm3] 2R_19878047_SNP [dm6]	C	A	3.350e^-4	0.924	DOWNSTREAM CG13872 INTERGENIC
2L	1553862	2L_1553862_SNP [dm3] 2L_1553862_SNP [dm6]	G	A	3.358e^-4	0.924	INTERGENIC
2L	5419626	2L_5419626_SNP [dm3] 2L_5419626_SNP [dm6]	C	A	3.360e^-4	0.924	INTERGENIC
2R	14880298	2R_14880298_SNP [dm3] 2R_18992793_SNP [dm6]	T	G	3.364e^-4	0.924	INTRON tn
2L	16118149	2L_16118149_SNP [dm3] 2L_16118149_SNP [dm6]	T	G	3.364e^-4	0.924	INTERGENIC
2R	9738750	2R_9738750_SNP [dm3] 2R_13851245_SNP [dm6]	T	C	3.371e^-4	0.924	NON_SYNONYMOUS_CODING CG30485	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1553006	2L_1553006_SNP [dm3] 2L_1553006_SNP [dm6]	A	C	3.375e^-4	0.924	INTERGENIC
2L	1552395	2L_1552395_SNP [dm3] 2L_1552395_SNP [dm6]	A	T	3.388e^-4	0.926	INTERGENIC
2R	6542721	2R_6542721_SNP [dm3] 2R_10655216_SNP [dm6]	C	A	3.403e^-4	0.929	INTERGENIC
2R	11388941	2R_11388941_SNP [dm3] 2R_15501436_SNP [dm6]	T	C	3.412e^-4	0.929	UPSTREAM Ir52b DOWNSTREAM Ir52a INTERGENIC
2L	13351136	2L_13351136_SNP [dm3] 2L_13351136_SNP [dm6]	G	A	3.415e^-4	0.929	SYNONYMOUS_CODING CG9395
X	14154168	X_14154168_SNP [dm3] X_14260135_SNP [dm6]	A	G	3.418e^-4	0.929	INTERGENIC
2R	6943755	2R_6943755_SNP [dm3] 2R_11056250_SNP [dm6]	C	A	3.429e^-4	0.931	INTRON luna
2L	5918760	2L_5918760_SNP [dm3] 2L_5918760_SNP [dm6]	T	C	3.451e^-4	0.933	SYNONYMOUS_CODING bchs
3L	12884742	3L_12884742_SNP [dm3] 3L_12891642_SNP [dm6]	T	C	3.453e^-4	0.933	DOWNSTREAM CG43894 INTRON CG43894
3L	13014945	3L_13014945_SNP [dm3] 3L_13021845_SNP [dm6]	T	A	3.459e^-4	0.933	UPSTREAM AdenoK INTRON AdenoK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8085097	2R_8085097_SNP [dm3] 2R_12197592_SNP [dm6]	T	C	3.460e^-4	0.933	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8101378	2R_8101378_SNP [dm3] 2R_12213873_SNP [dm6]	G	A	3.477e^-4	0.933	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12234351	2L_12234351_SNP [dm3] 2L_12234351_SNP [dm6]	G	A	3.486e^-4	0.933	INTRON aret
2R	17138866	2R_17138866_SNP [dm3] 2R_21251361_SNP [dm6]	C	T	3.488e^-4	0.933	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	4090279	2R_4090279_INS [dm3] 2R_8202774_INS [dm6]	A	GATTTTTAAAG...	3.488e^-4	0.933	INTRON LRP1
3L	6802224	3L_6802224_SNP [dm3] 3L_6809124_SNP [dm6]	C	T	3.492e^-4	0.933	INTERGENIC
X	15273498	X_15273498_INS [dm3] X_15379465_INS [dm6]	G	GCCCCGCAATG...	3.493e^-4	0.933	UPSTREAM acj6 DOWNSTREAM CG9164 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8097749	2R_8097749_SNP [dm3] 2R_12210244_SNP [dm6]	T	C	3.507e^-4	0.933	INTRON Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17754772	2R_17754772_SNP [dm3] 2R_21867267_SNP [dm6]	C	A	3.509e^-4	0.933	UPSTREAM comr INTERGENIC
3L	12543081	3L_12543081_SNP [dm3] 3L_12549981_SNP [dm6]	A	T	3.515e^-4	0.933	INTRON sowah
3L	14248441	3L_14248441_SNP [dm3] 3L_14255341_SNP [dm6]	C	T	3.515e^-4	0.933	INTERGENIC
2R	9739637	2R_9739637_SNP [dm3] 2R_13852132_SNP [dm6]	T	G	3.520e^-4	0.933	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG6543
2R	11908622	2R_11908622_SNP [dm3] 2R_16021117_SNP [dm6]	T	C	3.521e^-4	0.933	INTRON CG8399
2R	10076399	2R_10076399_SNP [dm3] 2R_14188894_SNP [dm6]	G	T	3.528e^-4	0.933	NON_SYNONYMOUS_CODING CG30069
3L	11846946	3L_11846946_SNP [dm3] 3L_11853846_SNP [dm6]	T	A	3.535e^-4	0.933	INTRON CG44837
2L	17350112	2L_17350112_SNP [dm3] 2L_17350112_SNP [dm6]	G	A	3.553e^-4	0.933	INTERGENIC
2R	19488422	2R_19488422_SNP [dm3] 2R_23600899_SNP [dm6]	C	T	3.563e^-4	0.933	UPSTREAM CG42560 & 1 other DOWNSTREAM CG10332 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	19723162	3R_19723162_SNP [dm3] 3R_23897440_SNP [dm6]	C	T	3.573e^-4	0.933	SYNONYMOUS_CODING sba
2L	5908019	2L_5908019_SNP [dm3] 2L_5908019_SNP [dm6]	T	C	3.574e^-4	0.933	DOWNSTREAM CG14000 INTRON bchs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	15734119	2R_15734119_SNP [dm3] 2R_19846614_SNP [dm6]	C	T	3.576e^-4	0.933	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15734139	2R_15734139_INS [dm3] 2R_19846634_INS [dm6]	A	ACA	3.576e^-4	0.933	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1484782	2L_1484782_SNP [dm3] 2L_1484782_SNP [dm6]	C	T	3.581e^-4	0.933	INTERGENIC
2L	8821335	2L_8821335_SNP [dm3] 2L_8821335_SNP [dm6]	C	G	3.585e^-4	0.933	INTERGENIC
3L	11846884	3L_11846884_DEL [dm3] 3L_11853784_DEL [dm6]	GCCATGT	G	3.593e^-4	0.933	INTRON CG44837
2L	2331572	2L_2331572_SNP [dm3] 2L_2331572_SNP [dm6]	C	A	3.597e^-4	0.933	INTRON CG9967 & 1 other
2L	13568398	2L_13568398_SNP [dm3] 2L_13568398_SNP [dm6]	T	A	3.600e^-4	0.933	INTRON kuz
2R	11904703	2R_11904703_SNP [dm3] 2R_16017198_SNP [dm6]	T	A	3.602e^-4	0.933	UPSTREAM CG8399 & 1 other INTERGENIC
2R	17846134	2R_17846134_SNP [dm3] 2R_21958629_SNP [dm6]	C	G	3.604e^-4	0.933	INTERGENIC
2R	19138692	2R_19138692_SNP [dm3] 2R_23251169_SNP [dm6]	C	A	3.609e^-4	0.933	INTERGENIC
3R	13610699	3R_13610699_SNP [dm3] 3R_17784977_SNP [dm6]	G	A	3.611e^-4	0.933	INTRON CG43102
2L	13104168	2L_13104168_SNP [dm3] 2L_13104168_SNP [dm6]	T	G	3.614e^-4	0.933	UPSTREAM CR45461 INTERGENIC
2R	17101239	2R_17101239_SNP [dm3] 2R_21213734_SNP [dm6]	G	A	3.623e^-4	0.933	SYNONYMOUS_CODING CG4302 DOWNSTREAM CG44245	TF binding site mE1_TFBS_sens
2R	6542842	2R_6542842_SNP [dm3] 2R_10655337_SNP [dm6]	C	T	3.627e^-4	0.933	INTERGENIC
X	1680786	X_1680786_SNP [dm3] X_1786753_SNP [dm6]	C	A	3.634e^-4	0.933	UTR_3_PRIME Adar INTRON CG42666
2L	14628817	2L_14628817_SNP [dm3] 2L_14628817_SNP [dm6]	T	C	3.636e^-4	0.933	INTRON osp
2R	8104534	2R_8104534_SNP [dm3] 2R_12217029_SNP [dm6]	G	A	3.638e^-4	0.933	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8011522	2R_8011522_DEL [dm3] 2R_12124017_DEL [dm6]	ACGGCCGCAGCTACAGCA...	A	3.639e^-4	0.933	INTERGENIC
3L	11847261	3L_11847261_SNP [dm3] 3L_11854161_SNP [dm6]	G	T	3.649e^-4	0.935	INTRON CG44837
2L	14854111	2L_14854111_SNP [dm3] 2L_14854111_SNP [dm6]	G	T	3.653e^-4	0.935	INTERGENIC
2L	13112957	2L_13112957_SNP [dm3] 2L_13112957_SNP [dm6]	T	A	3.658e^-4	0.935	INTERGENIC
3L	15091400	3L_15091400_SNP [dm3] 3L_15098300_SNP [dm6]	G	A	3.666e^-4	0.935	UTR_5_PRIME CTPsyn DOWNSTREAM CR43973 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10013760	2R_10013760_SNP [dm3] 2R_14126255_SNP [dm6]	T	C	3.670e^-4	0.935	INTRON Prosap
2R	14879690	2R_14879690_SNP [dm3] 2R_18992185_SNP [dm6]	C	T	3.693e^-4	0.936	INTRON tn
X	7786718	X_7786718_SNP [dm3] X_7892685_SNP [dm6]	A	T	3.702e^-4	0.936	DOWNSTREAM CG18624 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	4101251	2L_4101251_SNP [dm3] 2L_4101251_SNP [dm6]	C	G	3.709e^-4	0.936	INTRON ed
2L	1390687	2L_1390687_SNP [dm3] 2L_1390687_SNP [dm6]	A	G	3.710e^-4	0.936	INTRON lea
2L	9726390	2L_9726390_SNP [dm3] 2L_9726390_SNP [dm6]	C	A	3.712e^-4	0.936	INTRON Nckx30C
2R	13975389	2R_13975389_SNP [dm3] 2R_18087884_SNP [dm6]	G	C	3.714e^-4	0.936	INTRON CG34386
3L	6793866	3L_6793866_SNP [dm3] 3L_6800766_SNP [dm6]	T	G	3.715e^-4	0.936	INTERGENIC
X	1596084	X_1596084_SNP [dm3] X_1702051_SNP [dm6]	C	T	3.718e^-4	0.936	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18350880	X_18350880_SNP [dm3] X_18456847_SNP [dm6]	T	C	3.723e^-4	0.936	INTRON CG32547
2L	12498248	2L_12498248_SNP [dm3] 2L_12498248_SNP [dm6]	G	A	3.725e^-4	0.936	UPSTREAM t-cup INTRON bun
3R	9162381	3R_9162381_SNP [dm3] 3R_13336659_SNP [dm6]	A	G	3.730e^-4	0.936	INTERGENIC
2R	15749396	2R_15749396_SNP [dm3] 2R_19861891_SNP [dm6]	G	A	3.741e^-4	0.937	INTERGENIC	TF binding site mE1_TFBS_sens
2R	19138347	2R_19138347_SNP [dm3] 2R_23250824_SNP [dm6]	C	T	3.747e^-4	0.937	INTERGENIC
2R	4086389	2R_4086389_SNP [dm3] 2R_8198884_SNP [dm6]	A	T	3.748e^-4	0.937	INTRON LRP1
3R	25008422	3R_25008422_SNP [dm3] 3R_29182700_SNP [dm6]	G	T	3.754e^-4	0.937	INTRON CG14509
2L	3817011	2L_3817011_SNP [dm3] 2L_3817011_SNP [dm6]	C	T	3.772e^-4	0.941	UPSTREAM CR44077 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8092470	2R_8092470_SNP [dm3] 2R_12204965_SNP [dm6]	A	T	3.780e^-4	0.942	INTERGENIC
2R	10013875	2R_10013875_SNP [dm3] 2R_14126370_SNP [dm6]	C	T	3.792e^-4	0.942	INTRON Prosap
3R	19626655	3R_19626655_SNP [dm3] 3R_23800933_SNP [dm6]	C	T	3.792e^-4	0.942	UTR_3_PRIME mbc DOWNSTREAM CG33111	TF binding site mE1_TFBS_HSA
2L	20531915	2L_20531915_SNP [dm3] 2L_20531915_SNP [dm6]	G	C	3.800e^-4	0.942	DOWNSTREAM CG44270 INTERGENIC
2R	19278549	2R_19278549_SNP [dm3] 2R_23391026_SNP [dm6]	G	A	3.801e^-4	0.942	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15671347	2R_15671347_SNP [dm3] 2R_19783842_SNP [dm6]	C	T	3.808e^-4	0.942	SYNONYMOUS_CODING Obp56g UPSTREAM CR45231
3R	21433026	3R_21433026_SNP [dm3] 3R_25607304_SNP [dm6]	G	C	3.821e^-4	0.943	UTR_3_PRIME msi INTRON ymp
2L	14634511	2L_14634511_SNP [dm3] 2L_14634511_SNP [dm6]	C	T	3.823e^-4	0.943	INTRON osp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	12357305	3L_12357305_DEL [dm3] 3L_12364205_DEL [dm6]	GATAACAGTT	G	3.844e^-4	0.944	INTERGENIC
2L	13224963	2L_13224963_SNP [dm3] 2L_13224963_SNP [dm6]	A	G	3.853e^-4	0.944	NON_SYNONYMOUS_CODING CG15480 DOWNSTREAM CG16812	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	9830861	X_9830861_SNP [dm3] X_9936828_SNP [dm6]	G	A	3.853e^-4	0.944	INTERGENIC
2R	8090765	2R_8090765_SNP [dm3] 2R_12203260_SNP [dm6]	C	T	3.856e^-4	0.944	INTERGENIC
2R	10013765	2R_10013765_SNP [dm3] 2R_14126260_SNP [dm6]	G	C	3.863e^-4	0.944	INTRON Prosap
3R	9114814	3R_9114814_SNP [dm3] 3R_13289092_SNP [dm6]	A	T	3.867e^-4	0.944	UPSTREAM CG15887 INTERGENIC
3R	9162395	3R_9162395_SNP [dm3] 3R_13336673_SNP [dm6]	C	T	3.868e^-4	0.944	INTERGENIC
2L	1544372	2L_1544372_SNP [dm3] 2L_1544372_SNP [dm6]	T	G	3.868e^-4	0.944	INTERGENIC
2L	3472133	2L_3472133_SNP [dm3] 2L_3472133_SNP [dm6]	C	T	3.873e^-4	0.944	SYNONYMOUS_CODING CG31776 UPSTREAM pgant4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	6793803	3L_6793803_SNP [dm3] 3L_6800703_SNP [dm6]	C	A	3.874e^-4	0.944	INTERGENIC
3R	9098658	3R_9098658_SNP [dm3] 3R_13272936_SNP [dm6]	G	T	3.895e^-4	0.944	UPSTREAM CG8449 INTERGENIC
2L	15878682	2L_15878682_SNP [dm3] 2L_15878682_SNP [dm6]	A	T	3.896e^-4	0.944	NON_SYNONYMOUS_CODING CG7653	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19841382	2R_19841382_SNP [dm3] 2R_23953859_SNP [dm6]	G	T	3.897e^-4	0.944	SYNONYMOUS_CODING CG3803 UPSTREAM thoc5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	14881864	X_14881864_SNP [dm3] X_14987831_SNP [dm6]	T	A	3.897e^-4	0.944	INTRON eag	TF binding site BDTNP1_TFBS_dl
3L	14248387	3L_14248387_SNP [dm3] 3L_14255287_SNP [dm6]	T	A	3.910e^-4	0.944	INTERGENIC
2R	8092527	2R_8092527_SNP [dm3] 2R_12205022_SNP [dm6]	C	T	3.915e^-4	0.944	INTERGENIC
2R	9739622	2R_9739622_SNP [dm3] 2R_13852117_SNP [dm6]	T	C	3.917e^-4	0.944	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG6543
2L	8819067	2L_8819067_SNP [dm3] 2L_8819067_SNP [dm6]	A	T	3.918e^-4	0.944	INTERGENIC
2R	19381942	2R_19381942_SNP [dm3] 2R_23494419_SNP [dm6]	G	T	3.919e^-4	0.944	INTERGENIC
2R	19277508	2R_19277508_SNP [dm3] 2R_23389985_SNP [dm6]	A	T	3.934e^-4	0.945	DOWNSTREAM eIF2B-delta INTRON CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14835547	3R_14835547_SNP [dm3] 3R_19009825_SNP [dm6]	T	A	3.935e^-4	0.945	INTRON gukh
2R	13759733	2R_13759733_SNP [dm3] 2R_17872228_SNP [dm6]	A	T	3.949e^-4	0.945	UPSTREAM Mapmodulin INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	11409150	2L_11409150_SNP [dm3] 2L_11409150_SNP [dm6]	T	G	3.949e^-4	0.945	INTERGENIC	regulatory region REDfly_CRMs
3L	6928198	3L_6928198_SNP [dm3] 3L_6935098_SNP [dm6]	C	T	3.952e^-4	0.945	DOWNSTREAM CR45415 & 1 other INTERGENIC
2L	5913864	2L_5913864_SNP [dm3] 2L_5913864_SNP [dm6]	G	C	3.977e^-4	0.947	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
3L	9159906	3L_9159906_SNP [dm3] 3L_9166806_SNP [dm6]	G	T	3.978e^-4	0.947	INTRON Rdl
2R	14906493	2R_14906493_SNP [dm3] 2R_19018988_SNP [dm6]	G	A	3.980e^-4	0.947	INTERGENIC
2L	9672350	2L_9672350_SNP [dm3] 2L_9672350_SNP [dm6]	T	G	3.981e^-4	0.947	INTERGENIC
3R	13610673	3R_13610673_SNP [dm3] 3R_17784951_SNP [dm6]	A	T	3.992e^-4	0.948	INTRON CG43102
3L	19887825	3L_19887825_SNP [dm3] 3L_19894725_SNP [dm6]	T	C	3.994e^-4	0.948	START_GAINED Su_Tpl_ UTR_5_PRIME Su_Tpl_ DOWNSTREAM CR32218 INTRON Mi-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	9114818	3R_9114818_DEL [dm3] 3R_13289096_DEL [dm6]	TGCTTATG	T	4.001e^-4	0.948	UPSTREAM CG15887 INTERGENIC
2R	8105491	2R_8105491_SNP [dm3] 2R_12217986_SNP [dm6]	A	C	4.009e^-4	0.948	INTERGENIC
2L	12156666	2L_12156666_SNP [dm3] 2L_12156666_SNP [dm6]	A	G	4.010e^-4	0.948	INTRON CG31760
2R	8084472	2R_8084472_SNP [dm3] 2R_12196967_SNP [dm6]	C	T	4.018e^-4	0.949	INTRON CG8858	TF binding site mE1_TFBS_cad
2L	10871841	2L_10871841_SNP [dm3] 2L_10871841_SNP [dm6]	C	T	4.043e^-4	0.952	UPSTREAM CR45454 DOWNSTREAM CR45453 INTERGENIC
2L	5918926	2L_5918926_SNP [dm3] 2L_5918926_SNP [dm6]	T	C	4.046e^-4	0.952	SYNONYMOUS_CODING bchs
2R	8898533	2R_8898533_SNP [dm3] 2R_13011028_SNP [dm6]	C	T	4.049e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10896346	2R_10896346_DEL [dm3] 2R_15008841_DEL [dm6]	AA	A	4.054e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8101437	2R_8101437_SNP [dm3] 2R_12213932_SNP [dm6]	G	A	4.056e^-4	0.952	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11048247	3L_11048247_SNP [dm3] 3L_11055147_SNP [dm6]	C	T	4.064e^-4	0.952	UPSTREAM CG7888 INTRON CG7888
2L	14873075	2L_14873075_SNP [dm3] 2L_14873075_SNP [dm6]	G	A	4.066e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	1544383	2L_1544383_INS [dm3] 2L_1544383_INS [dm6]	A	ACTTAA	4.084e^-4	0.953	INTERGENIC
2R	7072456	2R_7072456_SNP [dm3] 2R_11184951_SNP [dm6]	C	A	4.094e^-4	0.953	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11910181	2R_11910181_SNP [dm3] 2R_16022676_SNP [dm6]	T	C	4.096e^-4	0.953	NON_SYNONYMOUS_CODING CG8399
3L	3034989	3L_3034989_SNP [dm3] 3L_3034989_SNP [dm6]	A	T	4.107e^-4	0.953	UPSTREAM CG2162 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	6096266	3L_6096266_SNP [dm3] 3L_6103166_SNP [dm6]	T	A	4.109e^-4	0.953	INTRON Ets65A
2R	14906466	2R_14906466_SNP [dm3] 2R_19018961_SNP [dm6]	T	C	4.114e^-4	0.953	INTERGENIC
3R	9061333	3R_9061333_SNP [dm3] 3R_13235611_SNP [dm6]	G	A	4.119e^-4	0.953	INTRON Ace
2R	9731904	2R_9731904_SNP [dm3] 2R_13844399_SNP [dm6]	G	C	4.122e^-4	0.953	INTRON Syngr
2L	12185064	2L_12185064_SNP [dm3] 2L_12185064_SNP [dm6]	T	A	4.123e^-4	0.953	INTRON aret
2L	11870315	2L_11870315_DEL [dm3] 2L_11870315_DEL [dm6]	GAAGGAGGAAAA...	TTTTC	4.131e^-4	0.953	INTRON Pde1c
2L	7441997	2L_7441997_SNP [dm3] 2L_7441997_SNP [dm6]	A	T	4.137e^-4	0.953	INTRON CG5973
X	7894768	X_7894768_SNP [dm3] X_8000735_SNP [dm6]	A	G	4.160e^-4	0.953	INTRON Tbh
2L	1545692	2L_1545692_SNP [dm3] 2L_1545692_SNP [dm6]	C	G	4.168e^-4	0.953	INTERGENIC
3L	9065828	3L_9065828_SNP [dm3] 3L_9072728_SNP [dm6]	C	A	4.174e^-4	0.953	UTR_5_PRIME CG4911 UPSTREAM CG4942	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Ubx
2L	17707814	2L_17707814_INS [dm3] 2L_17707814_INS [dm6]	A	AACA	4.181e^-4	0.953	INTRON CadN
3L	5908095	3L_5908095_SNP [dm3] 3L_5914995_SNP [dm6]	A	G	4.197e^-4	0.953	INTRON CG13288
3L	5377172	3L_5377172_SNP [dm3] 3L_5384072_SNP [dm6]	T	C	4.198e^-4	0.953	INTERGENIC
2R	1720046	2R_1720046_SNP [dm3] 2R_5832541_SNP [dm6]	T	G	4.199e^-4	0.953	INTRON dpr12
2L	17350116	2L_17350116_SNP [dm3] 2L_17350116_SNP [dm6]	T	A	4.208e^-4	0.953	INTERGENIC
3R	21746294	3R_21746294_SNP [dm3] 3R_25920572_SNP [dm6]	T	A	4.210e^-4	0.953	DOWNSTREAM CG14546 INTRON CG42235
2L	1544378	2L_1544378_SNP [dm3] 2L_1544378_SNP [dm6]	A	C	4.215e^-4	0.953	INTERGENIC
2R	6555570	2R_6555570_SNP [dm3] 2R_10668065_SNP [dm6]	G	T	4.216e^-4	0.953	INTERGENIC
3R	13838844	3R_13838844_SNP [dm3] 3R_18013122_SNP [dm6]	C	G	4.217e^-4	0.953	INTRON cpo	TF binding site mE1_TFBS_cad
3R	26581259	3R_26581259_SNP [dm3] 3R_30755537_SNP [dm6]	G	A	4.218e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	2299036	3R_2299036_SNP [dm3] 3R_6473314_SNP [dm6]	G	A	4.219e^-4	0.953	INTERGENIC
X	1678322	X_1678322_SNP [dm3] X_1784289_SNP [dm6]	C	A	4.228e^-4	0.953	UTR_3_PRIME Adar DOWNSTREAM Adar INTRON CG42666
3L	13108308	3L_13108308_SNP [dm3] 3L_13115208_SNP [dm6]	A	T	4.231e^-4	0.953	UTR_5_PRIME trn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	13311116	2L_13311116_SNP [dm3] 2L_13311116_SNP [dm6]	A	G	4.232e^-4	0.953	INTRON CG43778	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12144414	2R_12144414_SNP [dm3] 2R_16256909_SNP [dm6]	G	A	4.238e^-4	0.953	INTRON CngA
3R	14076317	3R_14076317_SNP [dm3] 3R_18250595_SNP [dm6]	G	A	4.243e^-4	0.953	UPSTREAM CG18598 DOWNSTREAM 14-3-3epsilon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3713729	2L_3713729_SNP [dm3] 2L_3713729_SNP [dm6]	A	C	4.243e^-4	0.953	UTR_5_PRIME CG2818 UPSTREAM CG31955 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8818498	2L_8818498_SNP [dm3] 2L_8818498_SNP [dm6]	G	A	4.252e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	9036581	3R_9036581_SNP [dm3] 3R_13210859_SNP [dm6]	T	C	4.258e^-4	0.953	INTRON CG8483
2R	12268318	2R_12268318_SNP [dm3] 2R_16380813_SNP [dm6]	C	T	4.264e^-4	0.953	UPSTREAM CR45317 DOWNSTREAM CR45316 INTRON CG43187
2L	8997909	2L_8997909_SNP [dm3] 2L_8997909_SNP [dm6]	C	T	4.266e^-4	0.953	SYNONYMOUS_CODING CG18661 UPSTREAM alien & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	6837564	3L_6837564_SNP [dm3] 3L_6844464_SNP [dm6]	T	C	4.272e^-4	0.953	INTERGENIC
2L	11773580	2L_11773580_SNP [dm3] 2L_11773580_SNP [dm6]	T	C	4.290e^-4	0.953	INTERGENIC
X	1678574	X_1678574_SNP [dm3] X_1784541_SNP [dm6]	A	T	4.301e^-4	0.953	UTR_3_PRIME Adar DOWNSTREAM Adar INTRON CG42666
X	2225900	X_2225900_SNP [dm3] X_2331867_SNP [dm6]	A	G	4.303e^-4	0.953	INTRON phl & 1 other
2R	10013361	2R_10013361_SNP [dm3] 2R_14125856_SNP [dm6]	A	C	4.305e^-4	0.953	INTRON Prosap
2R	1834912	2R_1834912_SNP [dm3] 2R_5947407_SNP [dm6]	C	A	4.311e^-4	0.953	INTERGENIC
2R	17138831	2R_17138831_SNP [dm3] 2R_21251326_SNP [dm6]	T	A	4.313e^-4	0.953	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	10221489	2R_10221489_SNP [dm3] 2R_14333984_SNP [dm6]	A	C	4.320e^-4	0.953	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17443026	2L_17443026_SNP [dm3] 2L_17443026_SNP [dm6]	G	A	4.323e^-4	0.953	INTRON dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9714301	2L_9714301_SNP [dm3] 2L_9714301_SNP [dm6]	T	A	4.352e^-4	0.953	UTR_3_PRIME Nckx30C
3L	14997665	3L_14997665_SNP [dm3] 3L_15004565_SNP [dm6]	T	A	4.372e^-4	0.953	INTRON Reck
2R	8095598	2R_8095598_SNP [dm3] 2R_12208093_SNP [dm6]	T	G	4.378e^-4	0.953	DOWNSTREAM CR45276 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	18184279	X_18184279_SNP [dm3] X_18290246_SNP [dm6]	G	A	4.383e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19133250	2R_19133250_SNP [dm3] 2R_23245727_SNP [dm6]	A	T	4.388e^-4	0.953	UPSTREAM yip3 DOWNSTREAM RpL22-like INTERGENIC
2L	19833246	2L_19833246_SNP [dm3] 2L_19833246_SNP [dm6]	A	T	4.390e^-4	0.953	INTRON sick
2R	16086998	2R_16086998_SNP [dm3] 2R_20199493_SNP [dm6]	G	C	4.390e^-4	0.953	INTERGENIC
3R	22746508	3R_22746508_SNP [dm3] 3R_26920786_SNP [dm6]	G	A	4.394e^-4	0.953	INTRON sda
2R	12147241	2R_12147241_SNP [dm3] 2R_16259736_SNP [dm6]	C	G	4.397e^-4	0.953	UTR_5_PRIME CngA
2L	14628482	2L_14628482_SNP [dm3] 2L_14628482_SNP [dm6]	A	G	4.408e^-4	0.953	INTRON osp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12442116	3L_12442116_SNP [dm3] 3L_12449016_SNP [dm6]	C	A	4.411e^-4	0.953	INTERGENIC
X	19877010	X_19877010_SNP [dm3] X_19982977_SNP [dm6]	G	A	4.417e^-4	0.953	INTERGENIC
2L	1501645	2L_1501645_SNP [dm3] 2L_1501645_SNP [dm6]	T	C	4.423e^-4	0.953	SYNONYMOUS_CODING CG7420 INTRON CR44064	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3529522	X_3529522_SNP [dm3] X_3635489_SNP [dm6]	T	A	4.433e^-4	0.953	INTRON AstA-R1
2L	13665220	2L_13665220_SNP [dm3] 2L_13665220_SNP [dm6]	G	A	4.435e^-4	0.953	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13610854	2L_13610854_SNP [dm3] 2L_13610854_SNP [dm6]	C	G	4.444e^-4	0.953	DOWNSTREAM mir-2489 INTRON kuz
2R	8079280	2R_8079280_SNP [dm3] 2R_12191775_SNP [dm6]	G	A	4.445e^-4	0.953	SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
2R	18049439	2R_18049439_DEL [dm3] 2R_22161934_DEL [dm6]	TGTAG	A	4.454e^-4	0.953	INTRON a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9216127	3R_9216127_SNP [dm3] 3R_13390405_SNP [dm6]	C	A	4.454e^-4	0.953	INTRON CCHa2
2L	8541310	2L_8541310_SNP [dm3] 2L_8541310_SNP [dm6]	T	G	4.455e^-4	0.953	UTR_3_PRIME CG17834 UPSTREAM tRNA:CR31603 & 1 other DOWNSTREAM tRNA:CR31604	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25138502	3R_25138502_SNP [dm3] 3R_29312780_SNP [dm6]	C	A	4.459e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	13134156	3L_13134156_INS [dm3] 3L_13141056_INS [dm6]	CA	TCTTTC	4.460e^-4	0.953	INTERGENIC
2R	17345220	2R_17345220_SNP [dm3] 2R_21457715_SNP [dm6]	G	A	4.466e^-4	0.953	INTRON Sdc
3R	9321567	3R_9321567_SNP [dm3] 3R_13495845_SNP [dm6]	A	C	4.466e^-4	0.953	INTERGENIC
X	13740057	X_13740057_SNP [dm3] X_13846024_SNP [dm6]	T	C	4.468e^-4	0.953	UPSTREAM AMPdeam DOWNSTREAM mamo INTERGENIC
3R	24660529	3R_24660529_SNP [dm3] 3R_28834807_SNP [dm6]	G	A	4.474e^-4	0.953	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
2L	2553237	2L_2553237_SNP [dm3] 2L_2553237_SNP [dm6]	G	A	4.487e^-4	0.953	UPSTREAM CG3515 INTERGENIC
2R	14455077	2R_14455077_SNP [dm3] 2R_18567572_SNP [dm6]	T	A	4.493e^-4	0.953	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13640882	2R_13640882_INS [dm3] 2R_17753377_INS [dm6]	C	CCAC	4.494e^-4	0.953	DOWNSTREAM CG6385 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10094951	2L_10094951_SNP [dm3] 2L_10094951_SNP [dm6]	C	A	4.496e^-4	0.953	INTRON CG44153 & 1 other
3L	4120071	3L_4120071_SNP [dm3] 3L_4120071_SNP [dm6]	A	G	4.499e^-4	0.953	INTRON Chd64	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3L	14571762	3L_14571762_SNP [dm3] 3L_14578662_SNP [dm6]	A	T	4.511e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	16550381	2R_16550381_SNP [dm3] 2R_20662876_SNP [dm6]	G	T	4.513e^-4	0.953	UTR_3_PRIME Fem-1 DOWNSTREAM CG13437	TF binding site mE1_TFBS_cad
2R	12068988	2R_12068988_SNP [dm3] 2R_16181483_SNP [dm6]	G	A	4.516e^-4	0.953	UTR_5_PRIME Lis-1 INTRON Lis-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4159832	3L_4159832_SNP [dm3] 3L_4159832_SNP [dm6]	T	G	4.519e^-4	0.953	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2R	8084529	2R_8084529_SNP [dm3] 2R_12197024_SNP [dm6]	T	C	4.519e^-4	0.953	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
3R	9524347	3R_9524347_SNP [dm3] 3R_13698625_SNP [dm6]	C	T	4.521e^-4	0.953	UTR_5_PRIME f-cup UPSTREAM f-cup INTRON f-cup	TF binding site mE1_TFBS_sens
2L	11066072	2L_11066072_SNP [dm3] 2L_11066072_SNP [dm6]	T	C	4.523e^-4	0.953	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9114834	3R_9114834_SNP [dm3] 3R_13289112_SNP [dm6]	C	T	4.528e^-4	0.953	UPSTREAM CG15887 INTERGENIC
3R	9114809	3R_9114809_SNP [dm3] 3R_13289087_SNP [dm6]	A	T	4.530e^-4	0.953	UPSTREAM CG15887 INTERGENIC
2R	8079175	2R_8079175_SNP [dm3] 2R_12191670_SNP [dm6]	T	G	4.536e^-4	0.953	NON_SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
2R	9232263	2R_9232263_SNP [dm3] 2R_13344758_SNP [dm6]	T	C	4.539e^-4	0.953	INTRON CR44206
2R	7978856	2R_7978856_SNP [dm3] 2R_12091351_SNP [dm6]	C	T	4.546e^-4	0.953	UTR_3_PRIME jeb
3R	9035795	3R_9035795_SNP [dm3] 3R_13210073_SNP [dm6]	A	G	4.564e^-4	0.953	SPLICE_SITE_REGION CG8483 SYNONYMOUS_CODING CG8483
3L	9776717	3L_9776717_SNP [dm3] 3L_9783617_SNP [dm6]	T	G	4.572e^-4	0.953	SYNONYMOUS_CODING CG8177	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11823025	2L_11823025_SNP [dm3] 2L_11823025_SNP [dm6]	C	T	4.572e^-4	0.953	INTRON Pde1c
2R	19138664	2R_19138664_SNP [dm3] 2R_23251141_SNP [dm6]	A	G	4.579e^-4	0.953	INTERGENIC
2L	5646230	2L_5646230_SNP [dm3] 2L_5646230_SNP [dm6]	G	C	4.589e^-4	0.953	INTRON CG31646	TF binding site mE1_TFBS_inv
2L	15340058	2L_15340058_SNP [dm3] 2L_15340058_SNP [dm6]	T	C	4.589e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8816347	2L_8816347_SNP [dm3] 2L_8816347_SNP [dm6]	T	C	4.591e^-4	0.953	INTERGENIC
2L	4041593	2L_4041593_DEL [dm3] 2L_4041593_DEL [dm6]	TC	T	4.592e^-4	0.953	INTRON ed
3L	2711161	3L_2711161_SNP [dm3] 3L_2711161_SNP [dm6]	C	T	4.593e^-4	0.953	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9266424	2R_9266424_SNP [dm3] 2R_13378919_SNP [dm6]	A	T	4.594e^-4	0.953	INTERGENIC
3L	14582529	3L_14582529_SNP [dm3] 3L_14589429_SNP [dm6]	G	A	4.600e^-4	0.953	INTRON HGTX
3R	19113024	3R_19113024_SNP [dm3] 3R_23287302_SNP [dm6]	G	A	4.603e^-4	0.953	SYNONYMOUS_CODING CG17083 DOWNSTREAM CG4434	TF binding site mE1_TFBS_sens
2R	11902497	2R_11902497_SNP [dm3] 2R_16014992_SNP [dm6]	A	T	4.605e^-4	0.953	SYNONYMOUS_CODING Rrp42 UPSTREAM Prosbeta1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	18552768	3L_18552768_SNP [dm3] 3L_18559668_SNP [dm6]	T	A	4.616e^-4	0.953	UPSTREAM AstC-R1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11897851	2R_11897851_SNP [dm3] 2R_16010346_SNP [dm6]	C	A	4.617e^-4	0.953	NON_SYNONYMOUS_CODING CG8388 INTRON CG8389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8090555	2R_8090555_DEL [dm3] 2R_12203050_DEL [dm6]	AAAA	A	4.624e^-4	0.953	INTERGENIC
2R	2481649	2R_2481649_SNP [dm3] 2R_6594144_SNP [dm6]	C	A	4.635e^-4	0.953	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	2481651	2R_2481651_SNP [dm3] 2R_6594146_SNP [dm6]	C	T	4.635e^-4	0.953	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	2481666	2R_2481666_SNP [dm3] 2R_6594161_SNP [dm6]	A	G	4.635e^-4	0.953	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	2481668	2R_2481668_SNP [dm3] 2R_6594163_SNP [dm6]	T	A	4.635e^-4	0.953	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	2481672	2R_2481672_SNP [dm3] 2R_6594167_SNP [dm6]	A	T	4.635e^-4	0.953	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	25094158	3R_25094158_SNP [dm3] 3R_29268436_SNP [dm6]	C	G	4.638e^-4	0.953	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	20255684	2L_20255684_SNP [dm3] 2L_20255684_SNP [dm6]	G	A	4.642e^-4	0.953	DOWNSTREAM CG17571 INTERGENIC
2L	1486457	2L_1486457_SNP [dm3] 2L_1486457_SNP [dm6]	T	C	4.644e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22909993	3R_22909993_SNP [dm3] 3R_27084271_SNP [dm6]	G	T	4.644e^-4	0.953	INTRON Cpr97Ea	TF binding site mE1_TFBS_cad
2L	16694407	2L_16694407_SNP [dm3] 2L_16694407_SNP [dm6]	G	A	4.647e^-4	0.953	INTRON grp
3R	9714046	3R_9714046_SNP [dm3] 3R_13888324_SNP [dm6]	G	C	4.669e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18950138	2R_18950138_SNP [dm3] 2R_23062615_SNP [dm6]	A	T	4.672e^-4	0.956	UPSTREAM l_2_06496 DOWNSTREAM CG9890 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	9065912	3L_9065912_SNP [dm3] 3L_9072812_SNP [dm6]	T	A	4.681e^-4	0.956	UPSTREAM CG4942 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Ubx
2L	9412624	2L_9412624_SNP [dm3] 2L_9412624_SNP [dm6]	G	T	4.685e^-4	0.956	INTRON Shawl
2R	17099809	2R_17099809_SNP [dm3] 2R_21212304_SNP [dm6]	A	G	4.686e^-4	0.956	NON_SYNONYMOUS_CODING CG44245 DOWNSTREAM CG4302
3R	25565837	3R_25565837_SNP [dm3] 3R_29740115_SNP [dm6]	T	G	4.691e^-4	0.956	UPSTREAM CG1969 INTRON CG1969	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12247120	3L_12247120_MNP [dm3] 3L_12254020_MNP [dm6]	TGT	AAC	4.697e^-4	0.956	INTRON app
2L	4016609	2L_4016609_SNP [dm3] 2L_4016609_SNP [dm6]	A	G	4.707e^-4	0.957	INTERGENIC
3L	688681	3L_688681_SNP [dm3] 3L_688681_SNP [dm6]	A	G	4.730e^-4	0.957	SYNONYMOUS_CODING CG32483 UPSTREAM CG3344	TF binding site mE1_TFBS_chinmo
2L	1371405	2L_1371405_SNP [dm3] 2L_1371405_SNP [dm6]	T	C	4.742e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_Med
2R	17101789	2R_17101789_SNP [dm3] 2R_21214284_SNP [dm6]	A	G	4.744e^-4	0.957	NON_SYNONYMOUS_CODING CG4302
2R	16593706	2R_16593706_SNP [dm3] 2R_20706201_SNP [dm6]	A	T	4.747e^-4	0.957	INTRON dpr
2R	8101389	2R_8101389_SNP [dm3] 2R_12213884_SNP [dm6]	A	G	4.748e^-4	0.957	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8998209	2L_8998209_SNP [dm3] 2L_8998209_SNP [dm6]	T	C	4.751e^-4	0.957	SYNONYMOUS_CODING CG18661 UPSTREAM alien & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
2R	8111212	2R_8111212_SNP [dm3] 2R_12223707_SNP [dm6]	A	C	4.755e^-4	0.957	DOWNSTREAM CG8854 INTERGENIC
2L	5907357	2L_5907357_SNP [dm3] 2L_5907357_SNP [dm6]	G	A	4.760e^-4	0.957	INTRON bchs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9055689	3L_9055689_SNP [dm3] 3L_9062589_SNP [dm6]	G	T	4.770e^-4	0.957	INTRON Argk
2L	11983749	2L_11983749_SNP [dm3] 2L_11983749_SNP [dm6]	T	C	4.774e^-4	0.957	SYNONYMOUS_CODING CG16965 DOWNSTREAM CG6686
3R	26942376	3R_26942376_SNP [dm3] 3R_31116654_SNP [dm6]	A	G	4.780e^-4	0.957	INTERGENIC
2L	5648830	2L_5648830_SNP [dm3] 2L_5648830_SNP [dm6]	T	C	4.780e^-4	0.957	INTRON CG31646
2L	11774233	2L_11774233_SNP [dm3] 2L_11774233_SNP [dm6]	C	T	4.789e^-4	0.957	INTERGENIC
2L	2781862	2L_2781862_SNP [dm3] 2L_2781862_SNP [dm6]	G	C	4.799e^-4	0.957	UTR_3_PRIME Syt1
2L	11330371	2L_11330371_SNP [dm3] 2L_11330371_SNP [dm6]	G	A	4.804e^-4	0.957	INTERGENIC
2L	2995879	2L_2995879_SNP [dm3] 2L_2995879_SNP [dm6]	C	G	4.810e^-4	0.957	SYNONYMOUS_CODING CG3558	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14880297	2R_14880297_SNP [dm3] 2R_18992792_SNP [dm6]	C	T	4.810e^-4	0.957	INTRON tn
3R	26911404	3R_26911404_SNP [dm3] 3R_31085682_SNP [dm6]	G	A	4.815e^-4	0.957	INTERGENIC
X	1670324	X_1670324_SNP [dm3] X_1776291_SNP [dm6]	C	T	4.816e^-4	0.957	INTRON Adar & 1 other
X	7455243	X_7455243_SNP [dm3] X_7561210_SNP [dm6]	A	T	4.819e^-4	0.957	INTERGENIC
2R	8095966	2R_8095966_SNP [dm3] 2R_12208461_SNP [dm6]	G	A	4.831e^-4	0.957	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2R	11132585	2R_11132585_SNP [dm3] 2R_15245080_SNP [dm6]	T	C	4.833e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1
2R	16126798	2R_16126798_SNP [dm3] 2R_20239293_SNP [dm6]	G	C	4.834e^-4	0.957	SYNONYMOUS_CODING CG13869 UPSTREAM Efhc1.2 DOWNSTREAM CG11099
3L	17606160	3L_17606160_SNP [dm3] 3L_17613060_SNP [dm6]	G	C	4.840e^-4	0.957	INTRON Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	9066182	3L_9066182_SNP [dm3] 3L_9073082_SNP [dm6]	C	T	4.853e^-4	0.957	UPSTREAM CG4942 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Ubx
2R	16953922	2R_16953922_SNP [dm3] 2R_21066417_SNP [dm6]	T	C	4.868e^-4	0.957	NON_SYNONYMOUS_CODING Cht4 SPLICE_SITE_REGION Cht4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8092484	2R_8092484_SNP [dm3] 2R_12204979_SNP [dm6]	T	C	4.876e^-4	0.957	INTERGENIC
3R	19365790	3R_19365790_SNP [dm3] 3R_23540068_SNP [dm6]	T	A	4.894e^-4	0.957	INTERGENIC
X	12295764	X_12295764_SNP [dm3] X_12401731_SNP [dm6]	C	T	4.896e^-4	0.957	INTERGENIC
2R	6353103	2R_6353103_SNP [dm3] 2R_10465598_SNP [dm6]	T	G	4.898e^-4	0.957	UTR_3_PRIME Galphao DOWNSTREAM Caf1-105	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18623473	X_18623473_SNP [dm3] X_18729440_SNP [dm6]	C	G	4.900e^-4	0.957	DOWNSTREAM CR45512 INTERGENIC	TF binding site mE1_TFBS_inv
2L	6425294	2L_6425294_SNP [dm3] 2L_6425294_SNP [dm6]	A	C	4.903e^-4	0.957	SYNONYMOUS_CODING Fic	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	2481677	2R_2481677_SNP [dm3] 2R_6594172_SNP [dm6]	G	C	4.904e^-4	0.957	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	19138662	2R_19138662_SNP [dm3] 2R_23251139_SNP [dm6]	G	T	4.909e^-4	0.957	INTERGENIC
2L	17350072	2L_17350072_SNP [dm3] 2L_17350072_SNP [dm6]	G	A	4.912e^-4	0.957	INTERGENIC
3R	9158394	3R_9158394_SNP [dm3] 3R_13332672_SNP [dm6]	C	T	4.927e^-4	0.957	UTR_5_PRIME PK2-R2 INTRON PK2-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24302585	3R_24302585_INS [dm3] 3R_28476863_INS [dm6]	T	TT	4.929e^-4	0.957	INTERGENIC
X	3528844	X_3528844_SNP [dm3] X_3634811_SNP [dm6]	A	G	4.930e^-4	0.957	INTRON AstA-R1
3L	11846933	3L_11846933_SNP [dm3] 3L_11853833_SNP [dm6]	C	T	4.944e^-4	0.957	INTRON CG44837
2R	8087580	2R_8087580_SNP [dm3] 2R_12200075_SNP [dm6]	A	G	4.946e^-4	0.957	UPSTREAM snoRNA:Me28S-C3420b & 1 other INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	12831910	2L_12831910_SNP [dm3] 2L_12831910_SNP [dm6]	A	T	4.947e^-4	0.957	INTERGENIC
2L	13948466	2L_13948466_SNP [dm3] 2L_13948466_SNP [dm6]	G	A	4.950e^-4	0.957	UPSTREAM CG16884 INTRON Ance-3
2R	13330998	2R_13330998_SNP [dm3] 2R_17443493_SNP [dm6]	A	G	4.958e^-4	0.957	INTRON EDTP
2L	1507261	2L_1507261_SNP [dm3] 2L_1507261_SNP [dm6]	C	T	4.960e^-4	0.957	INTERGENIC
2L	2892699	2L_2892699_SNP [dm3] 2L_2892699_SNP [dm6]	T	A	4.965e^-4	0.957	INTRON lilli	TF binding site BDTNP1_TFBS_twi
2R	7302956	2R_7302956_SNP [dm3] 2R_11415451_SNP [dm6]	C	T	4.971e^-4	0.957	UTR_3_PRIME CG7763 DOWNSTREAM CG7763 INTRON Drip
2L	8821437	2L_8821437_SNP [dm3] 2L_8821437_SNP [dm6]	G	A	4.979e^-4	0.957	INTERGENIC
3L	13131438	3L_13131438_SNP [dm3] 3L_13138338_SNP [dm6]	C	T	4.979e^-4	0.957	INTERGENIC
2L	8825154	2L_8825154_SNP [dm3] 2L_8825154_SNP [dm6]	C	T	4.983e^-4	0.957	UPSTREAM SoxN INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2R	19827219	2R_19827219_SNP [dm3] 2R_23939696_SNP [dm6]	T	G	4.988e^-4	0.957	UTR_5_PRIME CG3735 UPSTREAM Tal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11409070	2L_11409070_SNP [dm3] 2L_11409070_SNP [dm6]	G	T	4.989e^-4	0.957	INTERGENIC	regulatory region REDfly_CRMs
2R	8093874	2R_8093874_SNP [dm3] 2R_12206369_SNP [dm6]	G	A	4.994e^-4	0.957	EXON CR45276	TF binding site mE1_TFBS_cad
2R	2435309	2R_2435309_DEL [dm3] 2R_6547804_DEL [dm6]	GAATGCAGATGGAAGGGG...	G	5.017e^-4	0.957	INTRON jing
X	14549935	X_14549935_SNP [dm3] X_14655902_SNP [dm6]	C	T	5.017e^-4	0.957	INTERGENIC
X	4348606	X_4348606_DEL [dm3] X_4454573_DEL [dm6]	AGTTTTC	A	5.019e^-4	0.957	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6542799	2R_6542799_SNP [dm3] 2R_10655294_SNP [dm6]	A	G	5.021e^-4	0.957	INTERGENIC
X	12295490	X_12295490_SNP [dm3] X_12401457_SNP [dm6]	G	C	5.021e^-4	0.957	INTERGENIC
2R	8078014	2R_8078014_SNP [dm3] 2R_12190509_SNP [dm6]	T	C	5.029e^-4	0.957	UPSTREAM Cyp6t3 & 1 other INTERGENIC
2L	12689388	2L_12689388_SNP [dm3] 2L_12689388_SNP [dm6]	G	A	5.031e^-4	0.957	DOWNSTREAM CG5525 INTERGENIC
2R	8101974	2R_8101974_SNP [dm3] 2R_12214469_SNP [dm6]	T	A	5.032e^-4	0.957	DOWNSTREAM CG13171 INTERGENIC
2R	11890236	2R_11890236_SNP [dm3] 2R_16002731_SNP [dm6]	G	A	5.033e^-4	0.957	SYNONYMOUS_CODING CG8370	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3034958	3L_3034958_SNP [dm3] 3L_3034958_SNP [dm6]	C	A	5.036e^-4	0.957	UPSTREAM CG2162 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10442746	3L_10442746_SNP [dm3] 3L_10449646_SNP [dm6]	G	A	5.043e^-4	0.957	INTERGENIC
3R	7499748	3R_7499748_SNP [dm3] 3R_11674026_SNP [dm6]	T	C	5.045e^-4	0.957	UPSTREAM CG14715 DOWNSTREAM CG18476 & 1 other INTERGENIC
X	12405544	X_12405544_SNP [dm3] X_12511511_SNP [dm6]	C	T	5.045e^-4	0.957	INTRON CG2556
2R	11743228	2R_11743228_SNP [dm3] 2R_15855723_SNP [dm6]	G	T	5.048e^-4	0.957	UPSTREAM CG12970 DOWNSTREAM tun INTERGENIC
2R	14141196	2R_14141196_SNP [dm3] 2R_18253691_SNP [dm6]	G	A	5.054e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9114172	3R_9114172_SNP [dm3] 3R_13288450_SNP [dm6]	A	C	5.062e^-4	0.957	INTRON CG15887	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15467712	3L_15467712_INS [dm3] 3L_15474612_INS [dm6]	T	TT	5.072e^-4	0.957	UPSTREAM CG7804 INTERGENIC
3L	6934486	3L_6934486_SNP [dm3] 3L_6941386_SNP [dm6]	G	A	5.073e^-4	0.957	INTERGENIC
2L	1187142	2L_1187142_SNP [dm3] 2L_1187142_SNP [dm6]	C	G	5.077e^-4	0.957	INTRON CG5001
2R	16700967	2R_16700967_SNP [dm3] 2R_20813462_SNP [dm6]	A	G	5.078e^-4	0.957	INTERGENIC
2L	11409057	2L_11409057_SNP [dm3] 2L_11409057_SNP [dm6]	T	G	5.110e^-4	0.957	INTERGENIC	regulatory region REDfly_CRMs
3R	9373937	3R_9373937_SNP [dm3] 3R_13548215_SNP [dm6]	G	T	5.114e^-4	0.957	INTERGENIC
2L	19206961	2L_19206961_SNP [dm3] 2L_19206961_SNP [dm6]	C	T	5.119e^-4	0.957	SYNONYMOUS_CODING drl	TF binding site mE1_TFBS_cad
3R	12150988	3R_12150988_SNP [dm3] 3R_16325266_SNP [dm6]	A	T	5.121e^-4	0.957	UPSTREAM CG17929 DOWNSTREAM CG6901 INTRON Sulf1
2L	8813342	2L_8813342_SNP [dm3] 2L_8813342_SNP [dm6]	C	A	5.128e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	10405275	2L_10405275_SNP [dm3] 2L_10405275_SNP [dm6]	T	A	5.128e^-4	0.957	UPSTREAM Ir31a & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx

By genomic position
Variant impact
Gene name

mn_Surv_Azinpho_2_0 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results