DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.191e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	5.7142	0.0574

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2126 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	6937595	3L_6937595_SNP [dm3] 3L_6944495_SNP [dm6]	G	T	1.934e^-6	0.867	START_GAINED tow UTR_5_PRIME tow UPSTREAM tow	TF binding site mE1_TFBS_Trl
2R	17451264	2R_17451264_INS [dm3] 2R_21563759_INS [dm6]	T	TCCTAT	2.390e^-6	0.867	INTRON CG10440
2L	2795796	2L_2795796_SNP [dm3] 2L_2795796_SNP [dm6]	A	C	3.755e^-6	0.867	UPSTREAM Syt1 INTRON Syt1
2L	3267631	2L_3267631_DEL [dm3] 2L_3267631_DEL [dm6]	ATTTAAAATGGTGCATCGTA...	A	4.379e^-6	0.867	UPSTREAM CR44484 INTERGENIC
2L	6976575	2L_6976575_SNP [dm3] 2L_6976575_SNP [dm6]	C	T	5.685e^-6	0.867	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19614642	2R_19614642_SNP [dm3] 2R_23727119_SNP [dm6]	A	G	8.406e^-6	0.867	INTRON Sesn
3L	3915959	3L_3915959_SNP [dm3] 3L_3915959_SNP [dm6]	C	T	8.587e^-6	0.867	INTRON Eip63F-1
2R	17451277	2R_17451277_SNP [dm3] 2R_21563772_SNP [dm6]	C	T	8.639e^-6	0.867	INTRON CG10440
3L	1729840	3L_1729840_SNP [dm3] 3L_1729840_SNP [dm6]	A	C	8.918e^-6	0.867	INTRON drpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	17930646	2R_17930646_SNP [dm3] 2R_22043141_SNP [dm6]	C	A	9.405e^-6	0.867	UPSTREAM PpD5 INTERGENIC
2R	17103207	2R_17103207_SNP [dm3] 2R_21215702_SNP [dm6]	G	A	1.007e^-5	0.867	SYNONYMOUS_CODING CG15661 UPSTREAM CG4302
2L	22011282	2L_22011282_SNP [dm3] 2L_22011282_SNP [dm6]	G	A	1.069e^-5	0.867	INTERGENIC
X	9318757	X_9318757_SNP [dm3] X_9424724_SNP [dm6]	G	A	1.130e^-5	0.867	INTRON mgl
3R	26332114	3R_26332114_SNP [dm3] 3R_30506392_SNP [dm6]	G	A	1.216e^-5	0.867	UTR_5_PRIME CG15539 UPSTREAM PH4alphaSG1 & 1 other INTRON CG15539
2L	2795820	2L_2795820_SNP [dm3] 2L_2795820_SNP [dm6]	C	T	1.271e^-5	0.867	UPSTREAM Syt1 INTRON Syt1
X	10933694	X_10933694_SNP [dm3] X_11039661_SNP [dm6]	G	T	1.398e^-5	0.867	INTRON CG42339	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20533371	3R_20533371_SNP [dm3] 3R_24707649_SNP [dm6]	T	C	1.473e^-5	0.867	UTR_3_PRIME slo
3L	1729723	3L_1729723_SNP [dm3] 3L_1729723_SNP [dm6]	C	T	1.484e^-5	0.867	INTRON drpr	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	16297786	2R_16297786_SNP [dm3] 2R_20410281_SNP [dm6]	G	C	1.551e^-5	0.867	INTERGENIC
3R	14547161	3R_14547161_SNP [dm3] 3R_18721439_SNP [dm6]	A	G	1.593e^-5	0.867	DOWNSTREAM CG34283 INTRON Cha
X	9459132	X_9459132_SNP [dm3] X_9565099_SNP [dm6]	T	C	1.620e^-5	0.867	SYNONYMOUS_CODING Cubn
X	1270435	X_1270435_SNP [dm3] X_1376402_SNP [dm6]	C	T	1.620e^-5	0.867	INTRON AMPKalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	9840824	2L_9840824_SNP [dm3] 2L_9840824_SNP [dm6]	C	T	1.622e^-5	0.867	INTRON nAChRalpha6
2L	7636397	2L_7636397_SNP [dm3] 2L_7636397_SNP [dm6]	T	G	1.651e^-5	0.867	UPSTREAM CR44800 INTRON CR44799	TF binding site BDTNP1_TFBS_twi
2L	7654746	2L_7654746_DEL [dm3] 2L_7654746_DEL [dm6]	TGTAT	T	1.686e^-5	0.867	INTRON Slob
X	11963142	X_11963142_DEL [dm3] X_12069109_DEL [dm6]	TGCCTGCCTTTTGGCCTTTA...	T	1.696e^-5	0.867	INTRON CR43960 & 1 other EXON CR43961
3R	19776051	3R_19776051_SNP [dm3] 3R_23950329_SNP [dm6]	T	C	1.707e^-5	0.867	INTERGENIC
2L	22684667	2L_22684667_SNP [dm3] 2L_22791935_SNP [dm6]	G	C	1.891e^-5	0.867	INTERGENIC	TF binding site mE1_TFBS_cad
3L	3857159	3L_3857159_SNP [dm3] 3L_3857159_SNP [dm6]	C	T	1.975e^-5	0.867	INTRON Awh
3R	26332132	3R_26332132_SNP [dm3] 3R_30506410_SNP [dm6]	T	A	2.003e^-5	0.867	UTR_5_PRIME CG15539 UPSTREAM PH4alphaSG1 & 1 other INTRON CG15539
3L	1034183	3L_1034183_SNP [dm3] 3L_1034183_SNP [dm6]	T	G	2.005e^-5	0.867	UPSTREAM CG9205 INTRON trio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14793531	2R_14793531_SNP [dm3] 2R_18906026_SNP [dm6]	T	C	2.132e^-5	0.867	INTRON sano
2L	7454496	2L_7454496_SNP [dm3] 2L_7454496_SNP [dm6]	C	A	2.176e^-5	0.867	UPSTREAM Gr28a DOWNSTREAM Gr28b INTERGENIC
2L	15341216	2L_15341216_SNP [dm3] 2L_15341216_SNP [dm6]	C	A	2.176e^-5	0.867	INTERGENIC	TF binding site mE1_TFBS_sens
2L	9058061	2L_9058061_SNP [dm3] 2L_9058061_SNP [dm6]	T	C	2.219e^-5	0.867	INTRON CG31708
X	9237816	X_9237816_SNP [dm3] X_9343783_SNP [dm6]	A	G	2.245e^-5	0.867	INTRON CG34449
X	10748626	X_10748626_SNP [dm3] X_10854593_SNP [dm6]	C	T	2.343e^-5	0.867	SYNONYMOUS_CODING feo DOWNSTREAM sofe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	5006769	2L_5006769_SNP [dm3] 2L_5006769_SNP [dm6]	C	A	2.404e^-5	0.867	UPSTREAM Rtnl1 INTRON Rtnl1
X	17656359	X_17656359_INS [dm3] X_17762326_INS [dm6]	G	GGTGGGCTGTGGGCCAAAAG...	2.502e^-5	0.867	INTERGENIC
3R	26332126	3R_26332126_SNP [dm3] 3R_30506404_SNP [dm6]	C	T	2.522e^-5	0.867	UTR_5_PRIME CG15539 UPSTREAM PH4alphaSG1 & 1 other INTRON CG15539
2L	7636408	2L_7636408_SNP [dm3] 2L_7636408_SNP [dm6]	G	A	2.663e^-5	0.867	UPSTREAM CR44800 INTRON CR44799	TF binding site BDTNP1_TFBS_twi
2L	22212887	2L_22212887_SNP [dm3] 2L_22212887_SNP [dm6]	C	T	2.718e^-5	0.867	NON_SYNONYMOUS_CODING Ir40a	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26332116	3R_26332116_SNP [dm3] 3R_30506394_SNP [dm6]	A	C	2.742e^-5	0.867	UTR_5_PRIME CG15539 UPSTREAM PH4alphaSG1 & 1 other INTRON CG15539
2L	7882958	2L_7882958_SNP [dm3] 2L_7882958_SNP [dm6]	T	C	2.903e^-5	0.867	DOWNSTREAM CG7102 INTERGENIC
3L	3772078	3L_3772078_SNP [dm3] 3L_3772078_SNP [dm6]	T	A	2.966e^-5	0.867	INTRON CG32264
2L	16900031	2L_16900031_SNP [dm3] 2L_16900031_SNP [dm6]	T	C	3.043e^-5	0.867	NON_SYNONYMOUS_CODING CG31805 DOWNSTREAM CG12288 INTRON tweek	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14219427	3R_14219427_INS [dm3] 3R_18393705_INS [dm6]	T	TG	3.212e^-5	0.867	INTRON Vha100-2	TF binding site mE1_TFBS_cad
3L	16063703	3L_16063703_SNP [dm3] 3L_16070603_SNP [dm6]	G	A	3.222e^-5	0.867	INTRON Mbs
3L	3800094	3L_3800094_SNP [dm3] 3L_3800094_SNP [dm6]	T	C	3.266e^-5	0.867	SYNONYMOUS_CODING CG32264 INTRON CG32264	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17930849	2R_17930849_SNP [dm3] 2R_22043344_SNP [dm6]	C	A	3.291e^-5	0.867	UPSTREAM PpD5 INTERGENIC
3L	3952522	3L_3952522_DEL [dm3] 3L_3952522_DEL [dm6]	AAA	A	3.322e^-5	0.867	UTR_5_PRIME CG14984 UPSTREAM CG14984
3L	4401167	3L_4401167_INS [dm3] 3L_4401167_INS [dm6]	T	TGCCTT	3.456e^-5	0.867	INTRON slow	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	18423826	2R_18423826_SNP [dm3] 2R_22536321_SNP [dm6]	A	G	3.487e^-5	0.867	INTRON px
3L	7778011	3L_7778011_SNP [dm3] 3L_7784911_SNP [dm6]	A	G	3.614e^-5	0.867	INTRON CG32369
3L	1579412	3L_1579412_SNP [dm3] 3L_1579412_SNP [dm6]	A	G	3.658e^-5	0.867	INTRON CG13917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	19941273	2R_19941273_SNP [dm3] 2R_24053750_SNP [dm6]	C	T	3.707e^-5	0.867	DOWNSTREAM sei INTRON ppk29	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11816846	3R_11816846_SNP [dm3] 3R_15991124_SNP [dm6]	T	C	3.712e^-5	0.867	INTRON srp & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	17683801	3L_17683801_SNP [dm3] 3L_17690701_SNP [dm6]	A	C	3.787e^-5	0.867	INTRON Ccn
3L	5135211	3L_5135211_SNP [dm3] 3L_5142111_SNP [dm6]	A	T	3.800e^-5	0.867	UTR_5_PRIME CG4623 UPSTREAM CG10672
2L	7879689	2L_7879689_SNP [dm3] 2L_7879689_SNP [dm6]	G	A	3.860e^-5	0.867	UPSTREAM spz3 INTERGENIC	TF binding site mE1_TFBS_cad
X	2800634	X_2800634_SNP [dm3] X_2906601_SNP [dm6]	G	A	3.881e^-5	0.867	INTRON kirre
2R	17979671	2R_17979671_SNP [dm3] 2R_22092166_SNP [dm6]	G	C	3.884e^-5	0.867	NON_SYNONYMOUS_CODING CG11073 UPSTREAM CG44163	TF binding site mE1_TFBS_chinmo
2L	2907346	2L_2907346_SNP [dm3] 2L_2907346_SNP [dm6]	A	T	3.916e^-5	0.867	INTRON lilli	TF binding site mE1_TFBS_bab1
3R	7827936	3R_7827936_DEL [dm3] 3R_12002214_DEL [dm6]	GGGCATTG	G	4.025e^-5	0.867	INTRON Tk & 1 other
2R	2953121	2R_2953121_SNP [dm3] 2R_7065616_SNP [dm6]	T	G	4.124e^-5	0.867	INTRON Tsp42Er
2R	17930822	2R_17930822_SNP [dm3] 2R_22043317_SNP [dm6]	C	T	4.289e^-5	0.867	UPSTREAM PpD5 INTERGENIC
2L	1306580	2L_1306580_SNP [dm3] 2L_1306580_SNP [dm6]	C	T	4.340e^-5	0.867	INTERGENIC
2L	1306581	2L_1306581_SNP [dm3] 2L_1306581_SNP [dm6]	G	A	4.340e^-5	0.867	INTERGENIC
2R	20958564	2R_20958564_SNP [dm3] 2R_25071041_SNP [dm6]	A	T	4.428e^-5	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6174667	3L_6174667_SNP [dm3] 3L_6181567_SNP [dm6]	G	A	4.494e^-5	0.867	SYNONYMOUS_CODING CG10274 DOWNSTREAM D19B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
3R	26332130	3R_26332130_SNP [dm3] 3R_30506408_SNP [dm6]	A	T	4.530e^-5	0.867	UTR_5_PRIME CG15539 UPSTREAM PH4alphaSG1 & 1 other INTRON CG15539
X	14863927	X_14863927_SNP [dm3] X_14969894_SNP [dm6]	G	C	4.539e^-5	0.867	INTRON eag
2R	17930864	2R_17930864_SNP [dm3] 2R_22043359_SNP [dm6]	A	G	4.556e^-5	0.867	UPSTREAM PpD5 INTERGENIC
2L	6613732	2L_6613732_SNP [dm3] 2L_6613732_SNP [dm6]	G	A	4.646e^-5	0.867	INTRON CG11050
2L	9054304	2L_9054304_SNP [dm3] 2L_9054304_SNP [dm6]	T	C	4.732e^-5	0.867	INTRON CG31708
2R	17930865	2R_17930865_SNP [dm3] 2R_22043360_SNP [dm6]	A	G	4.746e^-5	0.867	UPSTREAM PpD5 INTERGENIC
2L	1112909	2L_1112909_SNP [dm3] 2L_1112909_SNP [dm6]	C	T	4.858e^-5	0.867	UPSTREAM CG14340 DOWNSTREAM CG14339 INTERGENIC
2L	9055896	2L_9055896_SNP [dm3] 2L_9055896_SNP [dm6]	G	A	4.861e^-5	0.867	INTRON CG31708
3R	11325799	3R_11325799_SNP [dm3] 3R_15500077_SNP [dm6]	C	A	4.879e^-5	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	7873061	2L_7873061_SNP [dm3] 2L_7873061_SNP [dm6]	A	G	4.980e^-5	0.867	UPSTREAM CR45364 DOWNSTREAM spz3 & 1 other INTERGENIC
2R	804798	2R_804798_SNP [dm3] 2R_4917293_SNP [dm6]	A	C	5.012e^-5	0.867	UPSTREAM Ir41a INTERGENIC
2L	1111238	2L_1111238_INS [dm3] 2L_1111238_INS [dm6]	T	TATA	5.108e^-5	0.867	INTRON CG14339
X	18462567	X_18462567_DEL [dm3] X_18568534_DEL [dm6]	ATTATGGTTAACT...	A	5.195e^-5	0.867	INTRON Bx	TF binding site mE1_TFBS_chinmo
2L	1111232	2L_1111232_SNP [dm3] 2L_1111232_SNP [dm6]	G	A	5.210e^-5	0.867	INTRON CG14339
2L	9055972	2L_9055972_SNP [dm3] 2L_9055972_SNP [dm6]	G	A	5.218e^-5	0.867	INTRON CG31708
2L	3737742	2L_3737742_SNP [dm3] 2L_3737742_SNP [dm6]	T	A	5.255e^-5	0.867	INTRON CG10019
3L	11688944	3L_11688944_SNP [dm3] 3L_11695844_SNP [dm6]	C	A	5.285e^-5	0.867	INTRON CG11652	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	8095054	2L_8095054_INS [dm3] 2L_8095054_INS [dm6]	A	ACTT	5.316e^-5	0.867	INTRON Bsg
2L	8095055	2L_8095055_DEL [dm3] 2L_8095055_DEL [dm6]	AATGGATT	A	5.330e^-5	0.867	INTRON Bsg
2L	9500406	2L_9500406_SNP [dm3] 2L_9500406_SNP [dm6]	T	C	5.350e^-5	0.867	INTRON CG33298
2L	12160225	2L_12160225_SNP [dm3] 2L_12160225_SNP [dm6]	T	G	5.366e^-5	0.867	INTRON CG31760	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26332302	3R_26332302_SNP [dm3] 3R_30506580_SNP [dm6]	C	G	5.394e^-5	0.867	SPLICE_SITE_REGION CG15539 UPSTREAM PH4alphaSG1 & 1 other INTRON CG15539
2R	13945755	2R_13945755_SNP [dm3] 2R_18058250_SNP [dm6]	C	A	5.400e^-5	0.867	EXON CR45314
2R	6361935	2R_6361935_SNP [dm3] 2R_10474430_SNP [dm6]	A	T	5.412e^-5	0.867	INTRON whd
3L	23847988	3L_23847988_SNP [dm3] 3L_23854888_SNP [dm6]	C	T	5.513e^-5	0.867	INTRON CG40470
X	12672167	X_12672167_SNP [dm3] X_12778134_SNP [dm6]	A	C	5.542e^-5	0.867	INTRON CG32647
3L	5898507	3L_5898507_SNP [dm3] 3L_5905407_SNP [dm6]	T	G	5.546e^-5	0.867	INTRON CG10486
2R	20646137	2R_20646137_SNP [dm3] 2R_24758614_SNP [dm6]	C	T	5.561e^-5	0.867	SYNONYMOUS_CODING spz6
X	3367716	X_3367716_SNP [dm3] X_3473683_SNP [dm6]	A	C	5.746e^-5	0.867	UPSTREAM CG12206 INTRON CR44999 & 1 other
3L	5898770	3L_5898770_SNP [dm3] 3L_5905670_SNP [dm6]	C	G	5.778e^-5	0.867	SYNONYMOUS_CODING CG10486 INTRON CG10486
3L	14383954	3L_14383954_SNP [dm3] 3L_14390854_SNP [dm6]	T	A	5.986e^-5	0.867	INTERGENIC
2L	4958714	2L_4958714_SNP [dm3] 2L_4958714_SNP [dm6]	C	T	6.164e^-5	0.867	SYNONYMOUS_CODING CG34124 DOWNSTREAM Marcal1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	942283	2L_942283_SNP [dm3] 2L_942283_SNP [dm6]	A	T	6.283e^-5	0.867	INTRON CG4341
3L	15147543	3L_15147543_SNP [dm3] 3L_15154443_SNP [dm6]	A	G	6.284e^-5	0.867	UTR_3_PRIME Msh6 DOWNSTREAM FucTA
X	6541523	X_6541523_SNP [dm3] X_6647490_SNP [dm6]	C	T	6.296e^-5	0.867	INTRON pigs
2R	20967812	2R_20967812_SNP [dm3] 2R_25080289_SNP [dm6]	T	G	6.343e^-5	0.867	INTRON gol	regulatory region REDfly_CRMs
3L	6097755	3L_6097755_SNP [dm3] 3L_6104655_SNP [dm6]	T	C	6.488e^-5	0.867	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7016094	2L_7016094_SNP [dm3] 2L_7016094_SNP [dm6]	G	A	6.527e^-5	0.867	SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11826984	3R_11826984_SNP [dm3] 3R_16001262_SNP [dm6]	T	C	6.555e^-5	0.867	SYNONYMOUS_CODING srp INTRON srp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	16469276	2L_16469276_SNP [dm3] 2L_16469276_SNP [dm6]	A	G	6.563e^-5	0.867	INTRON dac	TF binding site mE1_TFBS_inv
3L	570952	3L_570952_SNP [dm3] 3L_570952_SNP [dm6]	C	T	6.709e^-5	0.867	SYNONYMOUS_CODING hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12244039	3L_12244039_SNP [dm3] 3L_12250939_SNP [dm6]	G	T	6.748e^-5	0.867	INTRON app
3L	1421745	3L_1421745_SNP [dm3] 3L_1421745_SNP [dm6]	G	A	6.754e^-5	0.867	UTR_3_PRIME CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17454224	2L_17454224_SNP [dm3] 2L_17454224_SNP [dm6]	T	A	6.827e^-5	0.867	DOWNSTREAM CG6639 INTRON CG5050	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	24053106	3L_24053106_SNP [dm3] 3L_24060006_SNP [dm6]	C	A	6.875e^-5	0.867	INTERGENIC
2L	9055324	2L_9055324_SNP [dm3] 2L_9055324_SNP [dm6]	G	A	6.955e^-5	0.867	SYNONYMOUS_CODING CG31708
2L	7454554	2L_7454554_SNP [dm3] 2L_7454554_SNP [dm6]	T	C	6.991e^-5	0.867	UPSTREAM Gr28a DOWNSTREAM Gr28b INTERGENIC
X	19055435	X_19055435_SNP [dm3] X_19161402_SNP [dm6]	A	G	7.061e^-5	0.867	INTRON RhoGAP18B	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1441390	2L_1441390_SNP [dm3] 2L_1441390_SNP [dm6]	C	G	7.076e^-5	0.867	INTERGENIC
3L	6662831	3L_6662831_SNP [dm3] 3L_6669731_SNP [dm6]	T	G	7.109e^-5	0.867	INTERGENIC
2L	15206480	2L_15206480_SNP [dm3] 2L_15206480_SNP [dm6]	A	G	7.129e^-5	0.867	INTERGENIC
3L	11094418	3L_11094418_SNP [dm3] 3L_11101318_SNP [dm6]	G	A	7.170e^-5	0.867	SYNONYMOUS_CODING Elo68beta DOWNSTREAM APP-BP1 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19776055	3R_19776055_SNP [dm3] 3R_23950333_SNP [dm6]	C	T	7.208e^-5	0.867	INTERGENIC
2L	5569259	2L_5569259_SNP [dm3] 2L_5569259_SNP [dm6]	A	T	7.241e^-5	0.867	INTERGENIC
2L	7879371	2L_7879371_SNP [dm3] 2L_7879371_SNP [dm6]	T	A	7.242e^-5	0.867	UTR_5_PRIME spz3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	5757699	2L_5757699_SNP [dm3] 2L_5757699_SNP [dm6]	C	T	7.269e^-5	0.867	INTRON CG11030	TF binding site BDTNP1_TFBS_dl
X	12213571	X_12213571_SNP [dm3] X_12319538_SNP [dm6]	T	C	7.292e^-5	0.867	INTRON Ten-a	TF binding site mE1_TFBS_cad
2R	2213883	2R_2213883_SNP [dm3] 2R_6326378_SNP [dm6]	G	A	7.312e^-5	0.867	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
3R	13775217	3R_13775217_SNP [dm3] 3R_17949495_SNP [dm6]	A	T	7.326e^-5	0.867	INTRON cpo	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	3915932	3L_3915932_SNP [dm3] 3L_3915932_SNP [dm6]	G	A	7.381e^-5	0.867	INTRON Eip63F-1
3R	19776036	3R_19776036_SNP [dm3] 3R_23950314_SNP [dm6]	A	G	7.508e^-5	0.867	INTERGENIC
3R	10440178	3R_10440178_SNP [dm3] 3R_14614456_SNP [dm6]	C	A	7.554e^-5	0.867	INTRON CG14853
2L	856804	2L_856804_INS [dm3] 2L_856804_INS [dm6]	T	TGTGTAT	7.555e^-5	0.867	UPSTREAM CR45345 & 1 other DOWNSTREAM CG13949 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9054579	2L_9054579_SNP [dm3] 2L_9054579_SNP [dm6]	A	C	7.557e^-5	0.867	INTRON CG31708
2R	14452762	2R_14452762_SNP [dm3] 2R_18565257_SNP [dm6]	T	C	7.617e^-5	0.867	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	20972894	2R_20972894_SNP [dm3] 2R_25085371_SNP [dm6]	G	T	7.648e^-5	0.867	DOWNSTREAM lov INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7910958	2L_7910958_SNP [dm3] 2L_7910958_SNP [dm6]	C	T	7.648e^-5	0.867	INTRON Snoo	TF binding site BDTNP1_TFBS_dl
2L	1113957	2L_1113957_INS [dm3] 2L_1113957_INS [dm6]	C	TTCTCCCTAAGATACTTACC...	7.670e^-5	0.867	UTR_3_PRIME CG14340 DOWNSTREAM Pino
2L	19121310	2L_19121310_SNP [dm3] 2L_19121310_SNP [dm6]	A	C	7.707e^-5	0.867	DOWNSTREAM l_2_37Cc INTERGENIC	regulatory region REDfly_CRMs
3L	2794033	3L_2794033_SNP [dm3] 3L_2794033_SNP [dm6]	C	T	7.757e^-5	0.867	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	856803	2L_856803_SNP [dm3] 2L_856803_SNP [dm6]	G	A	7.936e^-5	0.867	UPSTREAM CR45345 & 1 other DOWNSTREAM CG13949 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19776043	3R_19776043_SNP [dm3] 3R_23950321_SNP [dm6]	G	T	7.973e^-5	0.867	INTERGENIC
3L	22249756	3L_22249756_SNP [dm3] 3L_22256656_SNP [dm6]	T	C	8.009e^-5	0.867	INTERGENIC
3R	11816861	3R_11816861_SNP [dm3] 3R_15991139_SNP [dm6]	G	T	8.060e^-5	0.867	INTRON srp & 1 other	TF binding site mE1_TFBS_cad
3R	13778511	3R_13778511_SNP [dm3] 3R_17952789_SNP [dm6]	T	G	8.093e^-5	0.867	INTRON cpo	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	5963010	2L_5963010_DEL [dm3] 2L_5963010_DEL [dm6]	ACCA	A	8.104e^-5	0.867	DOWNSTREAM psd INTERGENIC
2L	7672813	2L_7672813_SNP [dm3] 2L_7672813_SNP [dm6]	A	G	8.108e^-5	0.867	INTRON Slob & 1 other
X	6890202	X_6890202_SNP [dm3] X_6996169_SNP [dm6]	A	G	8.173e^-5	0.867	INTRON Inx7 EXON CR43837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8013733	2R_8013733_SNP [dm3] 2R_12126228_SNP [dm6]	A	T	8.260e^-5	0.867	INTERGENIC
3L	899934	3L_899934_SNP [dm3] 3L_899934_SNP [dm6]	C	T	8.269e^-5	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	19528729	3R_19528729_SNP [dm3] 3R_23703007_SNP [dm6]	A	G	8.322e^-5	0.867	NON_SYNONYMOUS_CODING CG31413 DOWNSTREAM CG31148
3L	5424427	3L_5424427_SNP [dm3] 3L_5431327_SNP [dm6]	A	T	8.374e^-5	0.867	INTRON CG34391
2R	18368746	2R_18368746_SNP [dm3] 2R_22481241_SNP [dm6]	C	T	8.423e^-5	0.867	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20963731	2R_20963731_SNP [dm3] 2R_25076208_SNP [dm6]	T	A	8.507e^-5	0.867	UPSTREAM tRNA:CR30199 & 1 other DOWNSTREAM tRNA:CR30198 INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_ttk
X	4288695	X_4288695_SNP [dm3] X_4394662_SNP [dm6]	A	G	8.514e^-5	0.867	UPSTREAM CR32773 INTRON CR32773
X	19055441	X_19055441_SNP [dm3] X_19161408_SNP [dm6]	T	A	8.523e^-5	0.867	INTRON RhoGAP18B	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	20967742	2R_20967742_SNP [dm3] 2R_25080219_SNP [dm6]	T	C	8.532e^-5	0.867	INTRON gol	regulatory region REDfly_CRMs
2L	6867382	2L_6867382_SNP [dm3] 2L_6867382_SNP [dm6]	C	T	8.626e^-5	0.867	INTRON Nha1
X	6890387	X_6890387_SNP [dm3] X_6996354_SNP [dm6]	A	T	8.634e^-5	0.867	INTRON Inx7 EXON CR43837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	22510012	3R_22510012_SNP [dm3] 3R_26684290_SNP [dm6]	G	C	8.636e^-5	0.867	INTERGENIC
3R	11327457	3R_11327457_SNP [dm3] 3R_15501735_SNP [dm6]	A	C	8.719e^-5	0.867	INTERGENIC
X	5680157	X_5680157_DEL [dm3] X_5786124_DEL [dm6]	AAGCAT	A	8.856e^-5	0.867	SPLICE_SITE_REGION CG42699 INTRON CG42699	TF binding site mE1_TFBS_chinmo
2L	14760690	2L_14760690_SNP [dm3] 2L_14760690_SNP [dm6]	A	C	8.890e^-5	0.867	UPSTREAM CG4691 INTERGENIC
2L	7722128	2L_7722128_SNP [dm3] 2L_7722128_SNP [dm6]	A	G	8.907e^-5	0.867	DOWNSTREAM CG13795 INTRON CG13794
2L	15803865	2L_15803865_SNP [dm3] 2L_15803865_SNP [dm6]	A	C	8.934e^-5	0.867	INTERGENIC
2L	4170168	2L_4170168_SNP [dm3] 2L_4170168_SNP [dm6]	T	A	8.962e^-5	0.867	INTERGENIC
3R	26332057	3R_26332057_SNP [dm3] 3R_30506335_SNP [dm6]	G	C	9.124e^-5	0.867	NON_SYNONYMOUS_CODING CG15539 UTR_5_PRIME CG15539 UPSTREAM PH4alphaSG1 & 1 other
2L	7112202	2L_7112202_SNP [dm3] 2L_7112202_SNP [dm6]	C	T	9.165e^-5	0.867	INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1265823	2L_1265823_SNP [dm3] 2L_1265823_SNP [dm6]	T	C	9.177e^-5	0.867	INTRON robo3
2R	17298546	2R_17298546_SNP [dm3] 2R_21411041_SNP [dm6]	C	G	9.197e^-5	0.867	INTRON Sdc
X	5583654	X_5583654_SNP [dm3] X_5689621_SNP [dm6]	T	C	9.215e^-5	0.867	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	19278519	2R_19278519_SNP [dm3] 2R_23390996_SNP [dm6]	A	C	9.264e^-5	0.867	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26332390	3R_26332390_SNP [dm3] 3R_30506668_SNP [dm6]	G	A	9.313e^-5	0.867	SYNONYMOUS_CODING CG15539 UPSTREAM mir-4908
2L	9055837	2L_9055837_SNP [dm3] 2L_9055837_SNP [dm6]	T	G	9.333e^-5	0.867	INTRON CG31708
2L	7942940	2L_7942940_SNP [dm3] 2L_7942940_SNP [dm6]	T	C	9.342e^-5	0.867	INTRON Snoo	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	2800211	X_2800211_SNP [dm3] X_2906178_SNP [dm6]	A	T	9.354e^-5	0.867	INTRON kirre
2L	16225362	2L_16225362_SNP [dm3] 2L_16225362_SNP [dm6]	A	T	9.375e^-5	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13867455	3R_13867455_SNP [dm3] 3R_18041733_SNP [dm6]	G	T	9.455e^-5	0.867	INTERGENIC
X	2800227	X_2800227_SNP [dm3] X_2906194_SNP [dm6]	A	T	9.467e^-5	0.867	INTRON kirre
2L	856836	2L_856836_SNP [dm3] 2L_856836_SNP [dm6]	T	C	9.517e^-5	0.867	UPSTREAM CR45345 & 1 other DOWNSTREAM CG13949 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14760559	2L_14760559_SNP [dm3] 2L_14760559_SNP [dm6]	C	A	9.534e^-5	0.867	UPSTREAM CG4691 INTERGENIC
2R	13114792	2R_13114792_SNP [dm3] 2R_17227287_SNP [dm6]	C	A	9.662e^-5	0.867	INTRON mbl
2R	20960219	2R_20960219_SNP [dm3] 2R_25072696_SNP [dm6]	G	T	9.700e^-5	0.867	UTR_3_PRIME gol DOWNSTREAM gol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4678794	3L_4678794_SNP [dm3] 3L_4678794_SNP [dm6]	C	A	9.777e^-5	0.867	DOWNSTREAM CG34266 INTRON axo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	26332312	3R_26332312_SNP [dm3] 3R_30506590_SNP [dm6]	C	G	9.856e^-5	0.867	UPSTREAM PH4alphaSG1 & 1 other INTRON CG15539
2R	18033807	2R_18033807_SNP [dm3] 2R_22146302_SNP [dm6]	C	T	9.887e^-5	0.867	INTRON a
3L	1385378	3L_1385378_SNP [dm3] 3L_1385378_SNP [dm6]	C	T	9.889e^-5	0.867	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	12331528	2R_12331528_SNP [dm3] 2R_16444023_SNP [dm6]	C	T	9.897e^-5	0.867	SYNONYMOUS_CODING CG4409
X	2800239	X_2800239_SNP [dm3] X_2906206_SNP [dm6]	C	T	9.964e^-5	0.867	INTRON kirre
X	6541545	X_6541545_SNP [dm3] X_6647512_SNP [dm6]	G	A	9.985e^-5	0.867	INTRON pigs
X	17372936	X_17372936_SNP [dm3] X_17478903_SNP [dm6]	T	A	1.001e^-4	0.867	INTRON CG43658	TF binding site mE1_TFBS_HSA
3L	4523548	3L_4523548_SNP [dm3] 3L_4523548_SNP [dm6]	C	G	1.002e^-4	0.867	INTRON Tie
2L	3737750	2L_3737750_SNP [dm3] 2L_3737750_SNP [dm6]	A	G	1.003e^-4	0.867	INTRON CG10019
3R	13867431	3R_13867431_SNP [dm3] 3R_18041709_SNP [dm6]	T	C	1.004e^-4	0.867	INTERGENIC
2L	7672835	2L_7672835_DEL [dm3] 2L_7672835_DEL [dm6]	GCC	AA	1.005e^-4	0.867	INTRON Slob & 1 other
X	11973331	X_11973331_SNP [dm3] X_12079298_SNP [dm6]	T	C	1.006e^-4	0.867	INTRON CR43960 & 1 other
X	19301148	X_19301148_SNP [dm3] X_19407115_SNP [dm6]	A	C	1.006e^-4	0.867	INTRON kek5
2R	20967414	2R_20967414_SNP [dm3] 2R_25079891_SNP [dm6]	A	T	1.011e^-4	0.867	INTRON gol	regulatory region REDfly_CRMs
3R	14817982	3R_14817982_SNP [dm3] 3R_18992260_SNP [dm6]	C	A	1.015e^-4	0.867	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	20967790	2R_20967790_SNP [dm3] 2R_25080267_SNP [dm6]	T	G	1.020e^-4	0.867	INTRON gol	regulatory region REDfly_CRMs
2R	20964505	2R_20964505_SNP [dm3] 2R_25076982_SNP [dm6]	G	T	1.022e^-4	0.867	UPSTREAM tRNA:CR30200 DOWNSTREAM tRNA:CR30198 & 1 other INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_ttk
2L	3267661	2L_3267661_SNP [dm3] 2L_3267661_SNP [dm6]	G	C	1.029e^-4	0.867	UPSTREAM CR44484 INTERGENIC
2L	4286723	2L_4286723_SNP [dm3] 2L_4286723_SNP [dm6]	C	T	1.033e^-4	0.867	INTRON tutl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	8723043	3L_8723043_SNP [dm3] 3L_8729943_SNP [dm6]	C	T	1.035e^-4	0.867	DOWNSTREAM Cp15 INTRON Cp19
X	1270395	X_1270395_SNP [dm3] X_1376362_SNP [dm6]	C	T	1.039e^-4	0.867	INTRON AMPKalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	5583632	X_5583632_SNP [dm3] X_5689599_SNP [dm6]	C	T	1.042e^-4	0.867	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	856798	2L_856798_SNP [dm3] 2L_856798_SNP [dm6]	A	G	1.060e^-4	0.867	UPSTREAM CR45345 & 1 other DOWNSTREAM CG13949 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9055369	2L_9055369_SNP [dm3] 2L_9055369_SNP [dm6]	G	T	1.061e^-4	0.867	SYNONYMOUS_CODING CG31708
2R	5657869	2R_5657869_INS [dm3] 2R_9770364_INS [dm6]	T	TT	1.068e^-4	0.867	INTRON CG1688	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1111233	2L_1111233_SNP [dm3] 2L_1111233_SNP [dm6]	C	A	1.069e^-4	0.867	INTRON CG14339
3R	11346129	3R_11346129_SNP [dm3] 3R_15520407_SNP [dm6]	T	A	1.074e^-4	0.867	INTERGENIC
2R	15217291	2R_15217291_SNP [dm3] 2R_19329786_SNP [dm6]	G	T	1.084e^-4	0.867	INTRON Rgk1	TF binding site mE1_TFBS_inv
X	5583629	X_5583629_SNP [dm3] X_5689596_SNP [dm6]	A	T	1.086e^-4	0.867	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	15166684	3R_15166684_DEL [dm3] 3R_19340962_DEL [dm6]	CCTTGGTC	C	1.088e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	6397028	2R_6397028_SNP [dm3] 2R_10509523_SNP [dm6]	T	C	1.088e^-4	0.867	SYNONYMOUS_CODING lola INTRON lola	TF binding site mE1_TFBS_cad
2L	14760715	2L_14760715_SNP [dm3] 2L_14760715_SNP [dm6]	G	T	1.088e^-4	0.867	UPSTREAM CG4691 INTERGENIC
3L	3369111	3L_3369111_SNP [dm3] 3L_3369111_SNP [dm6]	A	C	1.091e^-4	0.867	UPSTREAM Drs DOWNSTREAM kst INTERGENIC	regulatory region REDfly_CRMs
2R	12334367	2R_12334367_SNP [dm3] 2R_16446862_SNP [dm6]	C	T	1.093e^-4	0.867	SYNONYMOUS_CODING CG15925
3R	26332247	3R_26332247_SNP [dm3] 3R_30506525_SNP [dm6]	A	T	1.099e^-4	0.867	SYNONYMOUS_CODING CG15539 UPSTREAM PH4alphaSG1 & 1 other
3R	11327432	3R_11327432_SNP [dm3] 3R_15501710_SNP [dm6]	A	C	1.100e^-4	0.867	INTERGENIC
3R	11327440	3R_11327440_SNP [dm3] 3R_15501718_SNP [dm6]	G	A	1.100e^-4	0.867	INTERGENIC
3L	11860012	3L_11860012_SNP [dm3] 3L_11866912_SNP [dm6]	C	T	1.102e^-4	0.867	INTRON CG44837
2L	651650	2L_651650_DEL [dm3] 2L_651650_DEL [dm6]	AA	A	1.103e^-4	0.867	INTRON ds
X	17567440	X_17567440_SNP [dm3] X_17673407_SNP [dm6]	G	A	1.103e^-4	0.867	SYNONYMOUS_CODING chas	TF binding site mE1_TFBS_chinmo
2L	15524348	2L_15524348_SNP [dm3] 2L_15524348_SNP [dm6]	A	T	1.115e^-4	0.867	DOWNSTREAM CR43761 INTERGENIC
2L	2537265	2L_2537265_SNP [dm3] 2L_2537265_SNP [dm6]	A	T	1.118e^-4	0.867	INTERGENIC
2L	12174638	2L_12174638_DEL [dm3] 2L_12174638_DEL [dm6]	GTTTCATAGAGTTG...	G	1.123e^-4	0.867	UPSTREAM aret & 1 other DOWNSTREAM crok & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18787967	2R_18787967_SNP [dm3] 2R_22900444_SNP [dm6]	A	C	1.124e^-4	0.867	INTRON nahoda
2L	10784697	2L_10784697_SNP [dm3] 2L_10784697_SNP [dm6]	C	T	1.125e^-4	0.867	DOWNSTREAM CR44582 INTRON CG31869
2L	15342802	2L_15342802_SNP [dm3] 2L_15342802_SNP [dm6]	G	A	1.131e^-4	0.867	INTERGENIC
2L	10095682	2L_10095682_INS [dm3] 2L_10095682_INS [dm6]	A	ATATTGGGTATGGGGGA...	1.132e^-4	0.867	INTRON CG44153 & 1 other
2R	16359592	2R_16359592_SNP [dm3] 2R_20472087_SNP [dm6]	A	G	1.133e^-4	0.867	SYNONYMOUS_CODING CG12484
3L	8322043	3L_8322043_SNP [dm3] 3L_8328943_SNP [dm6]	T	A	1.133e^-4	0.867	DOWNSTREAM CG34461 INTRON CG34462	TF binding site mE1_TFBS_ttk
X	7693328	X_7693328_SNP [dm3] X_7799295_SNP [dm6]	A	G	1.134e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1042057	3L_1042057_SNP [dm3] 3L_1042057_SNP [dm6]	T	C	1.140e^-4	0.867	INTRON bab1	TF binding site mE1_TFBS_chinmo
3R	1115227	3R_1115227_SNP [dm3] 3R_5289505_SNP [dm6]	T	A	1.153e^-4	0.867	INTRON mtd
3R	19528599	3R_19528599_SNP [dm3] 3R_23702877_SNP [dm6]	G	C	1.157e^-4	0.867	NON_SYNONYMOUS_CODING CG31413 DOWNSTREAM CG31148
3R	16997262	3R_16997262_SNP [dm3] 3R_21171540_SNP [dm6]	A	T	1.157e^-4	0.867	INTRON SNF4Agamma
2L	943864	2L_943864_SNP [dm3] 2L_943864_SNP [dm6]	C	G	1.178e^-4	0.867	INTRON CG4341
2R	20967610	2R_20967610_SNP [dm3] 2R_25080087_SNP [dm6]	C	T	1.184e^-4	0.867	INTRON gol	regulatory region REDfly_CRMs
3L	7534313	3L_7534313_SNP [dm3] 3L_7541213_SNP [dm6]	G	C	1.186e^-4	0.867	UPSTREAM CG32374 DOWNSTREAM CG32376 INTERGENIC
2L	935961	2L_935961_SNP [dm3] 2L_935961_SNP [dm6]	G	A	1.191e^-4	0.867	INTRON CG4341	TF binding site mE1_TFBS_Trl
2L	9054237	2L_9054237_INS [dm3] 2L_9054237_INS [dm6]	T	TT	1.194e^-4	0.867	INTRON CG31708
2L	9053667	2L_9053667_SNP [dm3] 2L_9053667_SNP [dm6]	G	T	1.216e^-4	0.867	INTRON CG31708
2L	522943	2L_522943_SNP [dm3] 2L_522943_SNP [dm6]	G	C	1.232e^-4	0.867	UPSTREAM ush INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	16761893	2R_16761893_SNP [dm3] 2R_20874388_SNP [dm6]	C	T	1.242e^-4	0.867	UPSTREAM Ipk1 INTRON Ipk1
2L	6061594	2L_6061594_SNP [dm3] 2L_6061594_SNP [dm6]	G	A	1.243e^-4	0.867	SYNONYMOUS_CODING CG9140 DOWNSTREAM CG34180	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	13711694	2R_13711694_SNP [dm3] 2R_17824189_SNP [dm6]	A	C	1.253e^-4	0.867	INTRON grh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi transposable element FlyBase
2L	7709839	2L_7709839_SNP [dm3] 2L_7709839_SNP [dm6]	T	C	1.254e^-4	0.867	SYNONYMOUS_CODING Tep3 INTRON CR44990	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14912512	2R_14912512_SNP [dm3] 2R_19025007_SNP [dm6]	A	C	1.254e^-4	0.867	INTRON 5-HT1B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	26332804	3R_26332804_SNP [dm3] 3R_30507082_SNP [dm6]	G	A	1.255e^-4	0.867	NON_SYNONYMOUS_CODING CG15539 UPSTREAM CG34041 DOWNSTREAM mir-4908
X	5680720	X_5680720_SNP [dm3] X_5786687_SNP [dm6]	T	G	1.259e^-4	0.867	INTRON CG42699
X	5583402	X_5583402_SNP [dm3] X_5689369_SNP [dm6]	T	C	1.281e^-4	0.867	SYNONYMOUS_CODING CG3160 UPSTREAM cv DOWNSTREAM CR45525	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	13250032	X_13250032_SNP [dm3] X_13355999_SNP [dm6]	A	G	1.283e^-4	0.867	INTERGENIC
X	5583907	X_5583907_SNP [dm3] X_5689874_SNP [dm6]	G	A	1.289e^-4	0.867	UPSTREAM cv & 1 other EXON CR45525	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	14148857	2R_14148857_SNP [dm3] 2R_18261352_SNP [dm6]	A	C	1.298e^-4	0.867	INTERGENIC
2L	16469275	2L_16469275_SNP [dm3] 2L_16469275_SNP [dm6]	G	A	1.303e^-4	0.867	INTRON dac	TF binding site mE1_TFBS_inv
2R	20955576	2R_20955576_SNP [dm3] 2R_25068053_SNP [dm6]	C	T	1.307e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
X	3632475	X_3632475_SNP [dm3] X_3738442_SNP [dm6]	G	C	1.311e^-4	0.867	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2795569	2L_2795569_SNP [dm3] 2L_2795569_SNP [dm6]	G	A	1.311e^-4	0.867	UPSTREAM Syt1 INTRON Syt1
3L	6937516	3L_6937516_SNP [dm3] 3L_6944416_SNP [dm6]	T	A	1.318e^-4	0.867	UPSTREAM tow INTRON tow	TF binding site mE1_TFBS_Trl
2R	16761891	2R_16761891_SNP [dm3] 2R_20874386_SNP [dm6]	A	T	1.324e^-4	0.867	UPSTREAM Ipk1 INTRON Ipk1
X	6620598	X_6620598_SNP [dm3] X_6726565_SNP [dm6]	G	C	1.328e^-4	0.867	INTRON CG3168
2L	645279	2L_645279_SNP [dm3] 2L_645279_SNP [dm6]	G	T	1.332e^-4	0.867	NON_SYNONYMOUS_CODING ds
3R	6873544	3R_6873544_SNP [dm3] 3R_11047822_SNP [dm6]	C	G	1.338e^-4	0.867	SYNONYMOUS_CODING CG34114	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9586113	2L_9586113_SNP [dm3] 2L_9586113_SNP [dm6]	T	C	1.344e^-4	0.867	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	9586133	2L_9586133_INS [dm3] 2L_9586133_INS [dm6]	T	TTTAATATA	1.344e^-4	0.867	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	19010500	2R_19010500_SNP [dm3] 2R_23122977_SNP [dm6]	G	A	1.344e^-4	0.867	DOWNSTREAM Klp59C INTERGENIC
2L	14760717	2L_14760717_SNP [dm3] 2L_14760717_SNP [dm6]	A	G	1.345e^-4	0.867	UPSTREAM CG4691 INTERGENIC
X	5583661	X_5583661_SNP [dm3] X_5689628_SNP [dm6]	A	C	1.349e^-4	0.867	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	12077362	3R_12077362_SNP [dm3] 3R_16251640_SNP [dm6]	A	G	1.354e^-4	0.867	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17650706	2R_17650706_SNP [dm3] 2R_21763201_SNP [dm6]	T	C	1.357e^-4	0.867	UPSTREAM CG43982 EXON CR43983
2L	3798670	2L_3798670_SNP [dm3] 2L_3798670_SNP [dm6]	T	C	1.371e^-4	0.867	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_sens
X	12213828	X_12213828_SNP [dm3] X_12319795_SNP [dm6]	G	T	1.371e^-4	0.867	INTRON Ten-a
2L	7122737	2L_7122737_DEL [dm3] 2L_7122737_DEL [dm6]	AA	A	1.373e^-4	0.867	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	4428153	3L_4428153_SNP [dm3] 3L_4428153_SNP [dm6]	A	T	1.374e^-4	0.867	INTERGENIC
3R	10440285	3R_10440285_SNP [dm3] 3R_14614563_SNP [dm6]	A	C	1.376e^-4	0.867	INTRON CG14853
3L	13329331	3L_13329331_SNP [dm3] 3L_13336231_SNP [dm6]	A	G	1.381e^-4	0.867	INTERGENIC
X	18884803	X_18884803_SNP [dm3] X_18990770_SNP [dm6]	C	G	1.382e^-4	0.867	INTRON CG43759	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5680229	X_5680229_SNP [dm3] X_5786196_SNP [dm6]	T	A	1.387e^-4	0.867	INTRON CG42699	TF binding site mE1_TFBS_chinmo
2R	2800800	2R_2800800_SNP [dm3] 2R_6913295_SNP [dm6]	C	G	1.390e^-4	0.867	INTRON CG30158
3R	10440284	3R_10440284_SNP [dm3] 3R_14614562_SNP [dm6]	G	C	1.390e^-4	0.867	INTRON CG14853
X	2800195	X_2800195_SNP [dm3] X_2906162_SNP [dm6]	G	A	1.390e^-4	0.867	INTRON kirre
3L	10289871	3L_10289871_SNP [dm3] 3L_10296771_SNP [dm6]	G	A	1.390e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13086203	3L_13086203_SNP [dm3] 3L_13093103_SNP [dm6]	A	G	1.394e^-4	0.867	INTERGENIC
X	13250031	X_13250031_SNP [dm3] X_13355998_SNP [dm6]	C	T	1.395e^-4	0.867	INTERGENIC
2L	17167491	2L_17167491_SNP [dm3] 2L_17167491_SNP [dm6]	A	G	1.402e^-4	0.867	INTRON beat-IIIa & 1 other
3L	13816603	3L_13816603_SNP [dm3] 3L_13823503_SNP [dm6]	A	T	1.405e^-4	0.867	INTERGENIC
2R	14400782	2R_14400782_SNP [dm3] 2R_18513277_SNP [dm6]	G	A	1.408e^-4	0.867	INTERGENIC
2R	6276504	2R_6276504_SNP [dm3] 2R_10388999_SNP [dm6]	G	T	1.409e^-4	0.867	INTRON CG42732
3R	11327519	3R_11327519_SNP [dm3] 3R_15501797_SNP [dm6]	A	T	1.416e^-4	0.867	INTERGENIC
2R	20959507	2R_20959507_SNP [dm3] 2R_25071984_SNP [dm6]	G	A	1.421e^-4	0.867	DOWNSTREAM gol INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	14436342	2R_14436342_SNP [dm3] 2R_18548837_SNP [dm6]	A	G	1.430e^-4	0.867	UTR_3_PRIME Rgk2	TF binding site mE1_TFBS_cad
3R	3594523	3R_3594523_SNP [dm3] 3R_7768801_SNP [dm6]	T	C	1.438e^-4	0.867	INTERGENIC
2L	9058032	2L_9058032_SNP [dm3] 2L_9058032_SNP [dm6]	T	G	1.444e^-4	0.867	INTRON CG31708
3L	22141851	3L_22141851_SNP [dm3] 3L_22148751_SNP [dm6]	A	G	1.456e^-4	0.867	INTRON olf413	TF binding site BDTNP1_TFBS_da
2R	3417431	2R_3417431_SNP [dm3] 2R_7529926_SNP [dm6]	T	G	1.457e^-4	0.867	UPSTREAM Drat INTRON Drat	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	10728680	3R_10728680_SNP [dm3] 3R_14902958_SNP [dm6]	T	C	1.457e^-4	0.867	INTRON VhaPPA1-1	TF binding site mE1_TFBS_hkb mE1_TFBS_sens
2L	15342979	2L_15342979_SNP [dm3] 2L_15342979_SNP [dm6]	G	A	1.465e^-4	0.867	INTERGENIC
X	7810944	X_7810944_SNP [dm3] X_7916911_SNP [dm6]	G	A	1.469e^-4	0.867	INTRON snz
2R	8495550	2R_8495550_SNP [dm3] 2R_12608045_SNP [dm6]	C	A	1.472e^-4	0.867	INTRON Amph
2L	6973866	2L_6973866_SNP [dm3] 2L_6973866_SNP [dm6]	G	A	1.475e^-4	0.867	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	9581066	3R_9581066_SNP [dm3] 3R_13755344_SNP [dm6]	C	G	1.475e^-4	0.867	NON_SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1306575	2L_1306575_SNP [dm3] 2L_1306575_SNP [dm6]	A	C	1.485e^-4	0.867	INTERGENIC
2L	4279017	2L_4279017_SNP [dm3] 2L_4279017_SNP [dm6]	C	T	1.487e^-4	0.867	SYNONYMOUS_CODING Art2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5758749	2L_5758749_SNP [dm3] 2L_5758749_SNP [dm6]	T	C	1.501e^-4	0.867	SYNONYMOUS_CODING CG11030	TF binding site mE1_TFBS_cad
2R	12476189	2R_12476189_SNP [dm3] 2R_16588684_SNP [dm6]	G	A	1.509e^-4	0.867	SYNONYMOUS_CODING CG8311 DOWNSTREAM CG8306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8723076	3L_8723076_SNP [dm3] 3L_8729976_SNP [dm6]	G	A	1.511e^-4	0.867	DOWNSTREAM Cp15 INTRON Cp19
2L	9586120	2L_9586120_SNP [dm3] 2L_9586120_SNP [dm6]	G	T	1.512e^-4	0.867	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	14246184	2L_14246184_SNP [dm3] 2L_14246184_SNP [dm6]	A	G	1.528e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	20965428	2R_20965428_SNP [dm3] 2R_25077905_SNP [dm6]	C	T	1.530e^-4	0.867	SYNONYMOUS_CODING gol DOWNSTREAM tRNA:CR30200
3R	14308671	3R_14308671_SNP [dm3] 3R_18482949_SNP [dm6]	A	G	1.539e^-4	0.867	INTRON fru
2L	17184854	2L_17184854_SNP [dm3] 2L_17184854_SNP [dm6]	G	T	1.540e^-4	0.867	INTERGENIC
X	21311063	X_21311063_SNP [dm3] X_21440036_SNP [dm6]	A	T	1.549e^-4	0.867	DOWNSTREAM CG42343 INTRON CG42343	TF binding site BDTNP1_TFBS_dl
3L	7536600	3L_7536600_SNP [dm3] 3L_7543500_SNP [dm6]	T	C	1.549e^-4	0.867	INTERGENIC
2R	2953112	2R_2953112_SNP [dm3] 2R_7065607_SNP [dm6]	C	T	1.554e^-4	0.867	INTRON Tsp42Er
2L	12160187	2L_12160187_SNP [dm3] 2L_12160187_SNP [dm6]	G	A	1.557e^-4	0.867	INTRON CG31760	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18369040	2R_18369040_SNP [dm3] 2R_22481535_SNP [dm6]	G	T	1.559e^-4	0.867	INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20966949	2R_20966949_SNP [dm3] 2R_25079426_SNP [dm6]	C	T	1.569e^-4	0.867	INTRON gol	regulatory region REDfly_CRMs
3L	17683817	3L_17683817_SNP [dm3] 3L_17690717_SNP [dm6]	C	T	1.572e^-4	0.867	INTRON Ccn
X	2266591	X_2266591_SNP [dm3] X_2372558_SNP [dm6]	T	C	1.575e^-4	0.867	UTR_3_PRIME PsGEF INTRON PsGEF	TF binding site mE1_TFBS_HSA
2L	9055507	2L_9055507_SNP [dm3] 2L_9055507_SNP [dm6]	T	C	1.577e^-4	0.867	INTRON CG31708
2R	11420079	2R_11420079_SNP [dm3] 2R_15532574_SNP [dm6]	A	T	1.581e^-4	0.867	UPSTREAM Khc-73 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	12389467	3R_12389467_SNP [dm3] 3R_16563745_SNP [dm6]	A	G	1.583e^-4	0.867	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	22433552	3R_22433552_SNP [dm3] 3R_26607830_SNP [dm6]	G	A	1.584e^-4	0.867	EXON CR44951
2L	6730851	2L_6730851_SNP [dm3] 2L_6730851_SNP [dm6]	G	A	1.586e^-4	0.867	UTR_3_PRIME Liprin-alpha
X	21180972	X_21180972_SNP [dm3] X_21309945_SNP [dm6]	G	A	1.588e^-4	0.867	INTRON CG1801	transposable element FlyBase
2L	9051782	2L_9051782_SNP [dm3] 2L_9051782_SNP [dm6]	C	A	1.588e^-4	0.867	UTR_3_PRIME CG31708
X	5583939	X_5583939_SNP [dm3] X_5689906_SNP [dm6]	G	T	1.588e^-4	0.867	UPSTREAM cv & 1 other EXON CR45525	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	1952874	3R_1952874_SNP [dm3] 3R_6127152_SNP [dm6]	C	T	1.597e^-4	0.867	UPSTREAM CR43486 DOWNSTREAM CR43487 INTERGENIC
2L	9057532	2L_9057532_SNP [dm3] 2L_9057532_SNP [dm6]	T	G	1.606e^-4	0.867	INTRON CG31708
3R	19776037	3R_19776037_SNP [dm3] 3R_23950315_SNP [dm6]	G	A	1.614e^-4	0.867	INTERGENIC
3L	3431783	3L_3431783_SNP [dm3] 3L_3431783_SNP [dm6]	C	A	1.614e^-4	0.867	INTRON eIF5B
3L	3857181	3L_3857181_SNP [dm3] 3L_3857181_SNP [dm6]	C	T	1.618e^-4	0.867	INTRON Awh
3L	20856694	3L_20856694_SNP [dm3] 3L_20863594_SNP [dm6]	C	A	1.621e^-4	0.867	INTRON CG32432
2R	14114661	2R_14114661_SNP [dm3] 2R_18227156_SNP [dm6]	C	G	1.627e^-4	0.867	DOWNSTREAM CR45311 EXON CR45310
X	12672166	X_12672166_SNP [dm3] X_12778133_SNP [dm6]	T	G	1.628e^-4	0.867	INTRON CG32647
3L	22240992	3L_22240992_SNP [dm3] 3L_22247892_SNP [dm6]	T	G	1.631e^-4	0.867	DOWNSTREAM olf413 INTERGENIC
2R	12995092	2R_12995092_SNP [dm3] 2R_17107587_SNP [dm6]	T	C	1.636e^-4	0.867	DOWNSTREAM CG30456 INTERGENIC
3L	22260310	3L_22260310_SNP [dm3] 3L_22267210_SNP [dm6]	C	T	1.638e^-4	0.867	UPSTREAM Csp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
X	12213838	X_12213838_SNP [dm3] X_12319805_SNP [dm6]	T	A	1.639e^-4	0.867	INTRON Ten-a
2R	17683011	2R_17683011_SNP [dm3] 2R_21795506_SNP [dm6]	A	T	1.642e^-4	0.867	UPSTREAM CG34204 INTERGENIC
2L	1428036	2L_1428036_SNP [dm3] 2L_1428036_SNP [dm6]	T	G	1.646e^-4	0.867	UPSTREAM CG43401 INTERGENIC	TF binding site mE1_TFBS_cad
2L	16387449	2L_16387449_SNP [dm3] 2L_16387449_SNP [dm6]	C	A	1.654e^-4	0.867	INTERGENIC
3R	4794514	3R_4794514_SNP [dm3] 3R_8968792_SNP [dm6]	A	T	1.655e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	4355370	X_4355370_SNP [dm3] X_4461337_SNP [dm6]	C	T	1.657e^-4	0.867	INTRON bi & 1 other
3L	17683799	3L_17683799_SNP [dm3] 3L_17690699_SNP [dm6]	G	A	1.662e^-4	0.867	INTRON Ccn
3L	3857182	3L_3857182_SNP [dm3] 3L_3857182_SNP [dm6]	C	T	1.678e^-4	0.867	INTRON Awh
3R	3040420	3R_3040420_SNP [dm3] 3R_7214698_SNP [dm6]	A	G	1.684e^-4	0.867	UTR_3_PRIME CG14606
2R	11412856	2R_11412856_SNP [dm3] 2R_15525351_SNP [dm6]	G	A	1.689e^-4	0.867	INTRON Khc-73
2R	8120292	2R_8120292_SNP [dm3] 2R_12232787_SNP [dm6]	T	C	1.695e^-4	0.867	INTERGENIC
3L	4401091	3L_4401091_SNP [dm3] 3L_4401091_SNP [dm6]	A	G	1.702e^-4	0.867	INTRON slow	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	14760680	2L_14760680_SNP [dm3] 2L_14760680_SNP [dm6]	G	C	1.709e^-4	0.867	UPSTREAM CG4691 INTERGENIC
2L	7708487	2L_7708487_SNP [dm3] 2L_7708487_SNP [dm6]	T	C	1.715e^-4	0.867	SYNONYMOUS_CODING Tep3 EXON CR44990
X	3632596	X_3632596_SNP [dm3] X_3738563_SNP [dm6]	C	A	1.720e^-4	0.867	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	19158982	2L_19158982_SNP [dm3] 2L_19158982_SNP [dm6]	T	C	1.723e^-4	0.867	INTRON brat EXON CR44977	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	19496166	X_19496166_SNP [dm3] X_19602133_SNP [dm6]	T	G	1.729e^-4	0.867	UPSTREAM CG14220 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	18117825	2R_18117825_SNP [dm3] 2R_22230320_SNP [dm6]	G	C	1.732e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19086842	2L_19086842_SNP [dm3] 2L_19086842_SNP [dm6]	G	T	1.736e^-4	0.867	INTRON Lim3
3R	22785237	3R_22785237_SNP [dm3] 3R_26959515_SNP [dm6]	T	A	1.738e^-4	0.867	INTERGENIC
3L	23871041	3L_23871041_SNP [dm3] 3L_23877941_SNP [dm6]	G	A	1.742e^-4	0.867	INTRON CG40470
2R	17924785	2R_17924785_SNP [dm3] 2R_22037280_SNP [dm6]	A	G	1.746e^-4	0.867	INTRON CG34370
3L	6176618	3L_6176618_SNP [dm3] 3L_6183518_SNP [dm6]	G	A	1.748e^-4	0.867	SYNONYMOUS_CODING D19B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4449362	2L_4449362_DEL [dm3] 2L_4449362_DEL [dm6]	AGCGAGTGACAAATTACA...	A	1.757e^-4	0.867	UTR_3_PRIME CG15439 UPSTREAM MFS18	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9586140	2L_9586140_SNP [dm3] 2L_9586140_SNP [dm6]	A	C	1.758e^-4	0.867	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	12973445	3L_12973445_SNP [dm3] 3L_12980345_SNP [dm6]	C	T	1.770e^-4	0.867	INTERGENIC
3L	16435019	3L_16435019_SNP [dm3] 3L_16441919_SNP [dm6]	T	C	1.771e^-4	0.867	INTRON CG33158 & 1 other
2L	19121311	2L_19121311_SNP [dm3] 2L_19121311_SNP [dm6]	T	C	1.771e^-4	0.867	DOWNSTREAM l_2_37Cc INTERGENIC	regulatory region REDfly_CRMs
X	6890480	X_6890480_SNP [dm3] X_6996447_SNP [dm6]	G	C	1.776e^-4	0.867	INTRON Inx7 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6391443	3L_6391443_SNP [dm3] 3L_6398343_SNP [dm6]	T	C	1.786e^-4	0.867	INTERGENIC
2R	2116282	2R_2116282_SNP [dm3] 2R_6228777_SNP [dm6]	C	T	1.793e^-4	0.867	UPSTREAM bin3 INTRON bin3	TF binding site BDTNP1_TFBS_dl
2R	5666895	2R_5666895_SNP [dm3] 2R_9779390_SNP [dm6]	A	G	1.804e^-4	0.867	SYNONYMOUS_CODING CG1688	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5970778	3L_5970778_SNP [dm3] 3L_5977678_SNP [dm6]	T	C	1.807e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5763178	2L_5763178_SNP [dm3] 2L_5763178_SNP [dm6]	A	T	1.809e^-4	0.867	SYNONYMOUS_CODING obst-E DOWNSTREAM CG11030 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3033723	2R_3033723_SNP [dm3] 2R_7146218_SNP [dm6]	A	C	1.811e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7843829	3R_7843829_SNP [dm3] 3R_12018107_SNP [dm6]	C	T	1.811e^-4	0.867	SYNONYMOUS_CODING Spt3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3153760	2L_3153760_DEL [dm3] 2L_3153760_DEL [dm6]	TT	T	1.812e^-4	0.867	INTRON Mad
2L	5748986	2L_5748986_SNP [dm3] 2L_5748986_SNP [dm6]	G	A	1.813e^-4	0.867	INTRON CG11030	TF binding site BDTNP1_TFBS_twi
X	8325561	X_8325561_SNP [dm3] X_8431528_SNP [dm6]	G	A	1.818e^-4	0.867	UTR_3_PRIME Trf2
3L	8061808	3L_8061808_SNP [dm3] 3L_8068708_SNP [dm6]	T	G	1.821e^-4	0.867	NON_SYNONYMOUS_CODING CG42590 UPSTREAM tRNA:CR32363 DOWNSTREAM CG42591 INTRON Ect4
3L	17683770	3L_17683770_SNP [dm3] 3L_17690670_SNP [dm6]	A	G	1.830e^-4	0.867	INTRON Ccn
3L	22441450	3L_22441450_SNP [dm3] 3L_22448350_SNP [dm6]	A	T	1.834e^-4	0.867	INTERGENIC
X	13755173	X_13755173_SNP [dm3] X_13861140_SNP [dm6]	A	T	1.856e^-4	0.867	UTR_3_PRIME mamo INTRON mamo
2R	2954137	2R_2954137_SNP [dm3] 2R_7066632_SNP [dm6]	T	C	1.885e^-4	0.867	DOWNSTREAM Tsp42Er INTERGENIC	TF binding site mE1_TFBS_cad
X	5583547	X_5583547_SNP [dm3] X_5689514_SNP [dm6]	T	C	1.886e^-4	0.867	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	7613680	X_7613680_SNP [dm3] X_7719647_SNP [dm6]	T	A	1.892e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25360360	3R_25360360_SNP [dm3] 3R_29534638_SNP [dm6]	C	T	1.894e^-4	0.867	EXON CR43613	TF binding site mE1_TFBS_chinmo
3R	10728708	3R_10728708_SNP [dm3] 3R_14902986_SNP [dm6]	T	G	1.895e^-4	0.867	INTRON VhaPPA1-1	TF binding site mE1_TFBS_hkb mE1_TFBS_sens
2L	1371288	2L_1371288_SNP [dm3] 2L_1371288_SNP [dm6]	T	C	1.898e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_Med
3L	14033792	3L_14033792_SNP [dm3] 3L_14040692_SNP [dm6]	T	C	1.899e^-4	0.867	INTRON Hsc70Cb	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	7454510	2L_7454510_SNP [dm3] 2L_7454510_SNP [dm6]	C	A	1.899e^-4	0.867	UPSTREAM Gr28a DOWNSTREAM Gr28b INTERGENIC
2R	13911065	2R_13911065_SNP [dm3] 2R_18023560_SNP [dm6]	C	T	1.900e^-4	0.867	INTERGENIC
X	12672164	X_12672164_SNP [dm3] X_12778131_SNP [dm6]	G	A	1.903e^-4	0.867	INTRON CG32647
2L	3636529	2L_3636529_SNP [dm3] 2L_3636529_SNP [dm6]	T	C	1.910e^-4	0.867	DOWNSTREAM mir-4972 INTRON for
2L	9055317	2L_9055317_SNP [dm3] 2L_9055317_SNP [dm6]	G	A	1.911e^-4	0.867	SYNONYMOUS_CODING CG31708
2R	19870989	2R_19870989_SNP [dm3] 2R_23983466_SNP [dm6]	A	T	1.914e^-4	0.867	INTRON Sox14	TF binding site mE1_TFBS_chinmo
3L	3952538	3L_3952538_SNP [dm3] 3L_3952538_SNP [dm6]	A	G	1.918e^-4	0.867	UTR_5_PRIME CG14984 UPSTREAM CG14984
3L	3952540	3L_3952540_SNP [dm3] 3L_3952540_SNP [dm6]	G	A	1.918e^-4	0.867	UTR_5_PRIME CG14984 UPSTREAM CG14984
2L	9053887	2L_9053887_SNP [dm3] 2L_9053887_SNP [dm6]	T	C	1.924e^-4	0.867	INTRON CG31708
2L	21182440	2L_21182440_DEL [dm3] 2L_21182440_DEL [dm6]	TCTGTTAT	T	1.925e^-4	0.867	UTR_3_PRIME Mcm10 & 1 other DOWNSTREAM Ret INTRAGENIC Ret	TF binding site mE1_TFBS_cad mE1_TFBS_eve
3L	571110	3L_571110_SNP [dm3] 3L_571110_SNP [dm6]	T	C	1.929e^-4	0.867	SYNONYMOUS_CODING hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5489533	3L_5489533_SNP [dm3] 3L_5496433_SNP [dm6]	C	G	1.930e^-4	0.867	INTERGENIC
2L	7454511	2L_7454511_SNP [dm3] 2L_7454511_SNP [dm6]	C	G	1.938e^-4	0.867	UPSTREAM Gr28a DOWNSTREAM Gr28b INTERGENIC
2L	935960	2L_935960_SNP [dm3] 2L_935960_SNP [dm6]	A	T	1.941e^-4	0.867	INTRON CG4341	TF binding site mE1_TFBS_Trl
3R	20975604	3R_20975604_SNP [dm3] 3R_25149882_SNP [dm6]	A	G	1.945e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3L	23814430	3L_23814430_SNP [dm3] 3L_23821330_SNP [dm6]	A	T	1.953e^-4	0.867	INTERGENIC	transposable element FlyBase
2L	4059848	2L_4059848_SNP [dm3] 2L_4059848_SNP [dm6]	G	A	1.956e^-4	0.867	INTRON ed
2R	3980605	2R_3980605_SNP [dm3] 2R_8093100_SNP [dm6]	G	C	1.963e^-4	0.867	INTRON CG8713
2L	15648147	2L_15648147_SNP [dm3] 2L_15648147_SNP [dm6]	T	G	1.965e^-4	0.867	SYNONYMOUS_CODING CG4587
3L	7537972	3L_7537972_DEL [dm3] 3L_7544872_DEL [dm6]	AA	A	1.966e^-4	0.867	INTERGENIC
2R	17299518	2R_17299518_SNP [dm3] 2R_21412013_SNP [dm6]	T	C	1.970e^-4	0.867	INTRON Sdc	TF binding site mE1_TFBS_inv
2L	7854147	2L_7854147_SNP [dm3] 2L_7854147_SNP [dm6]	T	A	1.978e^-4	0.867	INTRON CG14535
3L	3431784	3L_3431784_SNP [dm3] 3L_3431784_SNP [dm6]	C	A	1.978e^-4	0.867	INTRON eIF5B
2L	15787570	2L_15787570_SNP [dm3] 2L_15787570_SNP [dm6]	T	G	1.985e^-4	0.867	NON_SYNONYMOUS_CODING CG18109
2L	19081783	2L_19081783_SNP [dm3] 2L_19081783_SNP [dm6]	C	A	1.985e^-4	0.867	INTRON Lim3	TF binding site BDTNP1_TFBS_sna
2R	14100348	2R_14100348_SNP [dm3] 2R_18212843_SNP [dm6]	C	T	1.992e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	22783711	3R_22783711_DEL [dm3] 3R_26957989_DEL [dm6]	TT	T	1.993e^-4	0.867	INTRON CG6330
2R	14147787	2R_14147787_SNP [dm3] 2R_18260282_SNP [dm6]	C	G	1.994e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	27032371	3R_27032371_SNP [dm3] 3R_31206649_SNP [dm6]	G	A	2.004e^-4	0.867	SYNONYMOUS_CODING chp
3L	7277829	3L_7277829_SNP [dm3] 3L_7284729_SNP [dm6]	G	A	2.017e^-4	0.867	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad
2L	9055973	2L_9055973_SNP [dm3] 2L_9055973_SNP [dm6]	G	A	2.025e^-4	0.867	INTRON CG31708
X	6541515	X_6541515_INS [dm3] X_6647482_INS [dm6]	C	CTTCCTTCTGC...	2.025e^-4	0.867	INTRON pigs
X	5583713	X_5583713_SNP [dm3] X_5689680_SNP [dm6]	G	T	2.038e^-4	0.867	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	19055683	X_19055683_SNP [dm3] X_19161650_SNP [dm6]	G	T	2.040e^-4	0.867	INTRON RhoGAP18B	TF binding site mE1_TFBS_inv
3L	9198165	3L_9198165_SNP [dm3] 3L_9205065_SNP [dm6]	G	A	2.040e^-4	0.867	SYNONYMOUS_CODING Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	14028209	3L_14028209_SNP [dm3] 3L_14035109_SNP [dm6]	G	A	2.043e^-4	0.867	NON_SYNONYMOUS_CODING CG6661 DOWNSTREAM CG6650 EXON pncr014:3L	TF binding site mE1_TFBS_chinmo
3R	11838294	3R_11838294_SNP [dm3] 3R_16012572_SNP [dm6]	G	C	2.053e^-4	0.867	UTR_5_PRIME GATAe INTRON GATAe	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
X	3037832	X_3037832_INS [dm3] X_3143799_INS [dm6]	A	AGAAA	2.053e^-4	0.867	INTRON N	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9054150	2L_9054150_SNP [dm3] 2L_9054150_SNP [dm6]	C	T	2.056e^-4	0.867	INTRON CG31708
3R	11327451	3R_11327451_SNP [dm3] 3R_15501729_SNP [dm6]	T	A	2.065e^-4	0.867	INTERGENIC
2L	7863070	2L_7863070_SNP [dm3] 2L_7863070_SNP [dm6]	T	A	2.076e^-4	0.867	INTERGENIC
3L	22417665	3L_22417665_SNP [dm3] 3L_22424565_SNP [dm6]	T	C	2.080e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	22249370	3L_22249370_SNP [dm3] 3L_22256270_SNP [dm6]	A	G	2.092e^-4	0.867	INTERGENIC
2R	12105662	2R_12105662_SNP [dm3] 2R_16218157_SNP [dm6]	G	C	2.094e^-4	0.867	INTRON mrj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7879193	2L_7879193_SNP [dm3] 2L_7879193_SNP [dm6]	T	C	2.102e^-4	0.867	START_GAINED spz3 UTR_5_PRIME spz3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	8708273	X_8708273_SNP [dm3] X_8814240_SNP [dm6]	T	C	2.103e^-4	0.867	INTERGENIC
3L	12591374	3L_12591374_SNP [dm3] 3L_12598274_SNP [dm6]	A	T	2.107e^-4	0.867	INTERGENIC
2R	7379057	2R_7379057_DEL [dm3] 2R_11491552_DEL [dm6]	CACAC	C	2.113e^-4	0.867	INTRON inv
2R	7299440	2R_7299440_SNP [dm3] 2R_11411935_SNP [dm6]	G	T	2.126e^-4	0.867	DOWNSTREAM Drip INTRON Drip
2R	7936042	2R_7936042_SNP [dm3] 2R_12048537_SNP [dm6]	G	T	2.129e^-4	0.867	NON_SYNONYMOUS_CODING Drep-1
2L	7870336	2L_7870336_SNP [dm3] 2L_7870336_SNP [dm6]	G	T	2.132e^-4	0.867	SYNONYMOUS_CODING Proc
3R	25517613	3R_25517613_SNP [dm3] 3R_29691891_SNP [dm6]	G	A	2.135e^-4	0.867	UPSTREAM dmrt99B INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9055905	2L_9055905_SNP [dm3] 2L_9055905_SNP [dm6]	G	T	2.137e^-4	0.867	INTRON CG31708
2L	9055904	2L_9055904_SNP [dm3] 2L_9055904_SNP [dm6]	T	A	2.138e^-4	0.867	INTRON CG31708
3L	22249432	3L_22249432_MNP [dm3] 3L_22256332_MNP [dm6]	AGA	CCT	2.147e^-4	0.867	INTERGENIC
3R	6727569	3R_6727569_SNP [dm3] 3R_10901847_SNP [dm6]	T	G	2.147e^-4	0.867	INTERGENIC
X	12213531	X_12213531_SNP [dm3] X_12319498_SNP [dm6]	A	T	2.152e^-4	0.867	INTRON Ten-a	TF binding site mE1_TFBS_cad
3R	10440234	3R_10440234_SNP [dm3] 3R_14614512_SNP [dm6]	G	A	2.152e^-4	0.867	INTRON CG14853
3L	13974653	3L_13974653_SNP [dm3] 3L_13981553_SNP [dm6]	T	A	2.155e^-4	0.867	UTR_3_PRIME CG17364 INTRON CG17364
X	12214911	X_12214911_SNP [dm3] X_12320878_SNP [dm6]	C	T	2.160e^-4	0.867	INTRON Ten-a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13945829	2R_13945829_SNP [dm3] 2R_18058324_SNP [dm6]	G	A	2.163e^-4	0.867	EXON CR45314
2L	5753967	2L_5753967_SNP [dm3] 2L_5753967_SNP [dm6]	A	G	2.165e^-4	0.867	INTRON CG11030
3L	2945767	3L_2945767_SNP [dm3] 3L_2945767_SNP [dm6]	T	A	2.168e^-4	0.867	UTR_3_PRIME Shab INTRON Shab	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15187891	3L_15187891_SNP [dm3] 3L_15194791_SNP [dm6]	A	T	2.168e^-4	0.867	INTERGENIC
2L	2485461	2L_2485461_SNP [dm3] 2L_2485461_SNP [dm6]	A	G	2.187e^-4	0.867	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
3R	16724485	3R_16724485_SNP [dm3] 3R_20898763_SNP [dm6]	T	C	2.191e^-4	0.867	INTERGENIC
3R	9830862	3R_9830862_SNP [dm3] 3R_14005140_SNP [dm6]	T	C	2.194e^-4	0.867	INTRON rdx
2R	19518960	2R_19518960_SNP [dm3] 2R_23631437_SNP [dm6]	A	C	2.196e^-4	0.867	INTERGENIC	silencer mE1_HDAC_PRE
3L	1361955	3L_1361955_SNP [dm3] 3L_1361955_SNP [dm6]	A	G	2.199e^-4	0.867	INTRON Ptp61F
3L	4401276	3L_4401276_SNP [dm3] 3L_4401276_SNP [dm6]	T	C	2.200e^-4	0.867	INTRON slow	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	20960827	2R_20960827_SNP [dm3] 2R_25073304_SNP [dm6]	T	G	2.210e^-4	0.867	NON_SYNONYMOUS_CODING gol UTR_3_PRIME gol DOWNSTREAM gol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	645330	2L_645330_SNP [dm3] 2L_645330_SNP [dm6]	T	G	2.213e^-4	0.867	NON_SYNONYMOUS_CODING ds
2L	9052290	2L_9052290_SNP [dm3] 2L_9052290_SNP [dm6]	C	T	2.215e^-4	0.867	UTR_3_PRIME CG31708
2L	14484071	2L_14484071_SNP [dm3] 2L_14484071_SNP [dm6]	A	T	2.225e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22250802	3L_22250802_SNP [dm3] 3L_22257702_SNP [dm6]	C	T	2.226e^-4	0.867	DOWNSTREAM Rich INTERGENIC
2R	14126926	2R_14126926_SNP [dm3] 2R_18239421_SNP [dm6]	G	T	2.229e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	24030691	3L_24030691_SNP [dm3] 3L_24037591_SNP [dm6]	T	C	2.236e^-4	0.867	INTERGENIC
3R	880883	3R_880883_SNP [dm3] 3R_5055161_SNP [dm6]	T	C	2.236e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19010489	2R_19010489_SNP [dm3] 2R_23122966_SNP [dm6]	T	G	2.247e^-4	0.867	DOWNSTREAM Klp59C INTERGENIC
3L	4958814	3L_4958814_SNP [dm3] 3L_4958814_SNP [dm6]	G	A	2.253e^-4	0.867	INTRON Con	TF binding site BDTNP1_TFBS_twi
3L	901981	3L_901981_SNP [dm3] 3L_901981_SNP [dm6]	G	T	2.263e^-4	0.867	UPSTREAM CG13905 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26331989	3R_26331989_SNP [dm3] 3R_30506267_SNP [dm6]	G	A	2.277e^-4	0.867	NON_SYNONYMOUS_CODING CG15539 UTR_5_PRIME CG15539 UPSTREAM PH4alphaSG1 & 1 other
2R	14695777	2R_14695777_SNP [dm3] 2R_18808272_SNP [dm6]	A	G	2.286e^-4	0.867	DOWNSTREAM CG15096 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	5949294	3L_5949294_SNP [dm3] 3L_5956194_SNP [dm6]	C	T	2.296e^-4	0.867	INTERGENIC
2L	1393423	2L_1393423_SNP [dm3] 2L_1393423_SNP [dm6]	A	G	2.297e^-4	0.867	INTRON lea
2L	14760672	2L_14760672_SNP [dm3] 2L_14760672_SNP [dm6]	C	G	2.307e^-4	0.867	UPSTREAM CG4691 INTERGENIC
3R	26262852	3R_26262852_SNP [dm3] 3R_30437130_SNP [dm6]	A	G	2.314e^-4	0.867	INTRON CG15537
3L	12481327	3L_12481327_SNP [dm3] 3L_12488227_SNP [dm6]	A	G	2.322e^-4	0.867	SPLICE_SITE_REGION CG10660 INTRON CG10660
2R	4140177	2R_4140177_SNP [dm3] 2R_8252672_SNP [dm6]	C	T	2.340e^-4	0.867	INTERGENIC
2R	13081078	2R_13081078_SNP [dm3] 2R_17193573_SNP [dm6]	T	C	2.348e^-4	0.867	INTERGENIC
2L	15205758	2L_15205758_SNP [dm3] 2L_15205758_SNP [dm6]	G	T	2.348e^-4	0.867	INTERGENIC
3R	10440280	3R_10440280_SNP [dm3] 3R_14614558_SNP [dm6]	T	A	2.355e^-4	0.867	INTRON CG14853
2R	17930498	2R_17930498_SNP [dm3] 2R_22042993_SNP [dm6]	G	A	2.358e^-4	0.867	UPSTREAM PpD5 INTERGENIC
3L	7804079	3L_7804079_SNP [dm3] 3L_7810979_SNP [dm6]	A	G	2.359e^-4	0.867	DOWNSTREAM Pdp1 INTERGENIC
2R	20964868	2R_20964868_SNP [dm3] 2R_25077345_SNP [dm6]	T	A	2.359e^-4	0.867	DOWNSTREAM tRNA:CR30199 & 1 other INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	6894906	X_6894906_SNP [dm3] X_7000873_SNP [dm6]	G	A	2.360e^-4	0.867	UTR_3_PRIME Inx2 DOWNSTREAM Inx2 INTRON Inx7 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20967040	2R_20967040_SNP [dm3] 2R_25079517_SNP [dm6]	C	A	2.365e^-4	0.867	INTRON gol	regulatory region REDfly_CRMs
X	12213544	X_12213544_SNP [dm3] X_12319511_SNP [dm6]	G	A	2.366e^-4	0.867	INTRON Ten-a	TF binding site mE1_TFBS_cad
3R	7485829	3R_7485829_SNP [dm3] 3R_11660107_SNP [dm6]	C	T	2.368e^-4	0.867	INTRON CG42327	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	10555295	3L_10555295_SNP [dm3] 3L_10562195_SNP [dm6]	C	T	2.372e^-4	0.867	INTRON A2bp1
2R	8994500	2R_8994500_SNP [dm3] 2R_13106995_SNP [dm6]	T	C	2.375e^-4	0.867	INTERGENIC
2R	14075292	2R_14075292_SNP [dm3] 2R_18187787_SNP [dm6]	G	T	2.376e^-4	0.867	SYNONYMOUS_CODING CG14499 INTRON CG33958	TF binding site mE1_TFBS_inv
2L	6970164	2L_6970164_SNP [dm3] 2L_6970164_SNP [dm6]	G	A	2.379e^-4	0.867	SYNONYMOUS_CODING snRNP-U1-70K	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20967725	2R_20967725_SNP [dm3] 2R_25080202_SNP [dm6]	T	C	2.390e^-4	0.867	INTRON gol	regulatory region REDfly_CRMs
2L	7917336	2L_7917336_SNP [dm3] 2L_7917336_SNP [dm6]	A	G	2.398e^-4	0.867	INTRON Snoo	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3153779	2L_3153779_SNP [dm3] 2L_3153779_SNP [dm6]	A	T	2.405e^-4	0.867	INTRON Mad
3R	19528895	3R_19528895_SNP [dm3] 3R_23703173_SNP [dm6]	T	C	2.410e^-4	0.867	SYNONYMOUS_CODING CG31413 DOWNSTREAM CG31148	TF binding site mE1_TFBS_sens
2L	17349022	2L_17349022_SNP [dm3] 2L_17349022_SNP [dm6]	T	A	2.415e^-4	0.867	INTERGENIC
3L	11111364	3L_11111364_SNP [dm3] 3L_11118264_SNP [dm6]	T	A	2.417e^-4	0.867	INTRON fd68A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	20258676	X_20258676_SNP [dm3] X_20387649_SNP [dm6]	G	A	2.418e^-4	0.867	INTERGENIC
2R	15772178	2R_15772178_INS [dm3] 2R_19884673_INS [dm6]	A	ATGTA	2.425e^-4	0.867	INTERGENIC
2L	1459939	2L_1459939_SNP [dm3] 2L_1459939_SNP [dm6]	T	C	2.436e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	8708064	X_8708064_SNP [dm3] X_8814031_SNP [dm6]	C	A	2.443e^-4	0.867	INTERGENIC
2L	874721	2L_874721_SNP [dm3] 2L_874721_SNP [dm6]	T	A	2.449e^-4	0.867	DOWNSTREAM PNUTS INTRON PNUTS
3L	13761249	3L_13761249_SNP [dm3] 3L_13768149_SNP [dm6]	T	A	2.454e^-4	0.867	INTRON bru-3
2L	8003148	2L_8003148_SNP [dm3] 2L_8003148_SNP [dm6]	A	G	2.463e^-4	0.867	INTRON Wwox
2L	8003159	2L_8003159_SNP [dm3] 2L_8003159_SNP [dm6]	T	C	2.463e^-4	0.867	INTRON Wwox
3L	1059626	3L_1059626_SNP [dm3] 3L_1059626_SNP [dm6]	C	G	2.472e^-4	0.867	INTRON bab1
X	21311088	X_21311088_SNP [dm3] X_21440061_SNP [dm6]	T	C	2.473e^-4	0.867	DOWNSTREAM CG42343 INTRON CG42343	TF binding site BDTNP1_TFBS_dl
3L	5135213	3L_5135213_SNP [dm3] 3L_5142113_SNP [dm6]	T	G	2.476e^-4	0.867	UTR_5_PRIME CG4623 UPSTREAM CG10672
3L	22259131	3L_22259131_SNP [dm3] 3L_22266031_SNP [dm6]	G	A	2.477e^-4	0.867	UTR_3_PRIME CG11523 DOWNSTREAM Ddx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4523565	3L_4523565_SNP [dm3] 3L_4523565_SNP [dm6]	T	C	2.494e^-4	0.867	INTRON Tie
X	7880360	X_7880360_SNP [dm3] X_7986327_SNP [dm6]	C	A	2.498e^-4	0.867	UTR_3_PRIME sn DOWNSTREAM sn
3L	4647501	3L_4647501_SNP [dm3] 3L_4647501_SNP [dm6]	T	A	2.502e^-4	0.867	UPSTREAM CG32238 INTRON axo
2L	3153782	2L_3153782_SNP [dm3] 2L_3153782_SNP [dm6]	T	A	2.503e^-4	0.867	INTRON Mad
2R	3021693	2R_3021693_SNP [dm3] 2R_7134188_SNP [dm6]	G	A	2.507e^-4	0.867	UPSTREAM CR44443 INTERGENIC
2R	15872579	2R_15872579_SNP [dm3] 2R_19985074_SNP [dm6]	T	C	2.511e^-4	0.867	DOWNSTREAM CG8654 INTERGENIC
X	4981617	X_4981617_SNP [dm3] X_5087584_SNP [dm6]	A	T	2.515e^-4	0.867	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
2L	9050619	2L_9050619_SNP [dm3] 2L_9050619_SNP [dm6]	T	C	2.516e^-4	0.867	INTERGENIC
3L	5950710	3L_5950710_SNP [dm3] 3L_5957610_SNP [dm6]	A	C	2.518e^-4	0.867	INTERGENIC
3R	20975650	3R_20975650_SNP [dm3] 3R_25149928_SNP [dm6]	C	A	2.526e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3952864	3L_3952864_SNP [dm3] 3L_3952864_SNP [dm6]	T	C	2.534e^-4	0.867	UPSTREAM CG14984 INTERGENIC
3L	22259119	3L_22259119_SNP [dm3] 3L_22266019_SNP [dm6]	T	A	2.539e^-4	0.867	UTR_3_PRIME CG11523 DOWNSTREAM Ddx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4958705	2L_4958705_SNP [dm3] 2L_4958705_SNP [dm6]	T	C	2.540e^-4	0.867	SYNONYMOUS_CODING CG34124 DOWNSTREAM Marcal1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	24250583	3L_24250583_SNP [dm3] 3L_24257483_SNP [dm6]	C	A	2.544e^-4	0.867	INTRON Snap25
3L	3915905	3L_3915905_SNP [dm3] 3L_3915905_SNP [dm6]	T	C	2.552e^-4	0.867	INTRON Eip63F-1
2L	1111235	2L_1111235_SNP [dm3] 2L_1111235_SNP [dm6]	A	T	2.555e^-4	0.867	INTRON CG14339
2L	18094073	2L_18094073_SNP [dm3] 2L_18094073_SNP [dm6]	A	C	2.556e^-4	0.867	INTERGENIC
2R	7071803	2R_7071803_SNP [dm3] 2R_11184298_SNP [dm6]	C	T	2.563e^-4	0.867	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21052385	2L_21052385_SNP [dm3] 2L_21052385_SNP [dm6]	T	A	2.568e^-4	0.867	UPSTREAM CG42238 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3L	3800103	3L_3800103_SNP [dm3] 3L_3800103_SNP [dm6]	G	T	2.571e^-4	0.867	SYNONYMOUS_CODING CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7709342	2L_7709342_SNP [dm3] 2L_7709342_SNP [dm6]	C	T	2.573e^-4	0.867	SPLICE_SITE_REGION Tep3 INTRON Tep3 EXON CR44990	TF binding site mE1_TFBS_cad
2L	14369436	2L_14369436_INS [dm3] 2L_14369436_INS [dm6]	C	CCATTAAACACCTT...	2.576e^-4	0.867	INTERGENIC
X	21311245	X_21311245_SNP [dm3] X_21440218_SNP [dm6]	T	C	2.576e^-4	0.867	DOWNSTREAM CG42343 INTRON CG42343	TF binding site BDTNP1_TFBS_dl
3L	23874526	3L_23874526_SNP [dm3] 3L_23881426_SNP [dm6]	T	C	2.594e^-4	0.867	DOWNSTREAM CR43941 INTRON CG40470	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3961345	3L_3961345_SNP [dm3] 3L_3961345_SNP [dm6]	A	G	2.594e^-4	0.867	INTRON CG12605
2L	16469333	2L_16469333_SNP [dm3] 2L_16469333_SNP [dm6]	A	C	2.595e^-4	0.867	INTRON dac	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	874331	2L_874331_SNP [dm3] 2L_874331_SNP [dm6]	A	G	2.596e^-4	0.867	DOWNSTREAM PNUTS INTRON PNUTS
X	12672184	X_12672184_SNP [dm3] X_12778151_SNP [dm6]	A	T	2.607e^-4	0.867	INTRON CG32647
3R	10524210	3R_10524210_SNP [dm3] 3R_14698488_SNP [dm6]	G	T	2.614e^-4	0.867	UTR_3_PRIME kibra DOWNSTREAM kibra
2L	9054907	2L_9054907_SNP [dm3] 2L_9054907_SNP [dm6]	G	A	2.615e^-4	0.867	INTRON CG31708
2L	14760706	2L_14760706_INS [dm3] 2L_14760706_INS [dm6]	T	TC	2.616e^-4	0.867	UPSTREAM CG4691 INTERGENIC
2L	7869904	2L_7869904_SNP [dm3] 2L_7869904_SNP [dm6]	A	C	2.617e^-4	0.867	INTRON Proc
2R	2307619	2R_2307619_INS [dm3] 2R_6420114_INS [dm6]	T	TTGTGG	2.649e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3L	11094363	3L_11094363_SNP [dm3] 3L_11101263_SNP [dm6]	G	T	2.651e^-4	0.867	DOWNSTREAM APP-BP1 & 1 other INTRON Elo68beta	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7935036	2L_7935036_SNP [dm3] 2L_7935036_SNP [dm6]	G	A	2.660e^-4	0.867	INTRON Snoo
3L	15416820	3L_15416820_SNP [dm3] 3L_15423720_SNP [dm6]	C	T	2.661e^-4	0.867	INTERGENIC
3L	10290491	3L_10290491_SNP [dm3] 3L_10297391_SNP [dm6]	T	C	2.668e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	8292473	3L_8292473_SNP [dm3] 3L_8299373_SNP [dm6]	C	A	2.671e^-4	0.867	START_GAINED CG7197 UTR_5_PRIME CG7197 UPSTREAM CG13671 DOWNSTREAM Rab19	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11526845	2L_11526845_SNP [dm3] 2L_11526845_SNP [dm6]	T	C	2.676e^-4	0.867	INTRON CG31705
3L	5951762	3L_5951762_SNP [dm3] 3L_5958662_SNP [dm6]	G	A	2.688e^-4	0.867	INTERGENIC
2L	19912210	2L_19912210_SNP [dm3] 2L_19912210_SNP [dm6]	T	A	2.694e^-4	0.867	SYNONYMOUS_CODING TotF UPSTREAM CR43097 DOWNSTREAM Victoria INTRON sick
3L	24045223	3L_24045223_SNP [dm3] 3L_24052123_SNP [dm6]	C	T	2.695e^-4	0.867	INTERGENIC
2L	11618512	2L_11618512_SNP [dm3] 2L_11618512_SNP [dm6]	T	G	2.696e^-4	0.867	INTRON kek2
2L	9586132	2L_9586132_SNP [dm3] 2L_9586132_SNP [dm6]	T	C	2.696e^-4	0.867	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	9474701	X_9474701_INS [dm3] X_9580668_INS [dm6]	T	TCTTAAGTTT	2.698e^-4	0.867	UPSTREAM CG32699 DOWNSTREAM CR45540 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18656047	2R_18656047_SNP [dm3] 2R_22768542_SNP [dm6]	C	T	2.709e^-4	0.867	INTRON CG42260
2L	2795767	2L_2795767_SNP [dm3] 2L_2795767_SNP [dm6]	C	T	2.709e^-4	0.867	UPSTREAM Syt1 INTRON Syt1
2L	3434711	2L_3434711_SNP [dm3] 2L_3434711_SNP [dm6]	T	C	2.715e^-4	0.867	INTERGENIC
2R	15872578	2R_15872578_SNP [dm3] 2R_19985073_SNP [dm6]	T	A	2.719e^-4	0.867	DOWNSTREAM CG8654 INTERGENIC
3R	16091249	3R_16091249_SNP [dm3] 3R_20265527_SNP [dm6]	A	T	2.720e^-4	0.867	INTRON cic
X	5583954	X_5583954_SNP [dm3] X_5689921_SNP [dm6]	A	G	2.723e^-4	0.867	UPSTREAM cv & 1 other EXON CR45525	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	15090432	2L_15090432_SNP [dm3] 2L_15090432_SNP [dm6]	G	C	2.725e^-4	0.867	INTRON CG15270
2L	9586156	2L_9586156_SNP [dm3] 2L_9586156_SNP [dm6]	T	A	2.727e^-4	0.867	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	3739187	2L_3739187_SNP [dm3] 2L_3739187_SNP [dm6]	T	A	2.731e^-4	0.867	INTRON CG10019
X	19015569	X_19015569_SNP [dm3] X_19121536_SNP [dm6]	T	C	2.740e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7865430	2L_7865430_SNP [dm3] 2L_7865430_SNP [dm6]	A	T	2.743e^-4	0.867	UTR_3_PRIME Proc
3L	22240299	3L_22240299_SNP [dm3] 3L_22247199_SNP [dm6]	G	A	2.743e^-4	0.867	UTR_3_PRIME olf413
3R	25517584	3R_25517584_SNP [dm3] 3R_29691862_SNP [dm6]	C	T	2.747e^-4	0.867	UPSTREAM dmrt99B INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8003158	2L_8003158_SNP [dm3] 2L_8003158_SNP [dm6]	T	C	2.761e^-4	0.867	INTRON Wwox
2L	19912211	2L_19912211_INS [dm3] 2L_19912211_INS [dm6]	G	GATC	2.762e^-4	0.867	CODON_INSERTION TotF UPSTREAM CR43097 DOWNSTREAM Victoria INTRON sick
2R	14401650	2R_14401650_SNP [dm3] 2R_18514145_SNP [dm6]	A	G	2.762e^-4	0.867	UPSTREAM CG43066 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	24039852	3L_24039852_SNP [dm3] 3L_24046752_SNP [dm6]	T	C	2.765e^-4	0.867	INTERGENIC
3R	12363439	3R_12363439_SNP [dm3] 3R_16537717_SNP [dm6]	A	G	2.765e^-4	0.867	INTRON CG42342
2R	19606688	2R_19606688_SNP [dm3] 2R_23719165_SNP [dm6]	G	A	2.773e^-4	0.867	SYNONYMOUS_CODING CG18128 INTRON Sesn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11816956	3R_11816956_SNP [dm3] 3R_15991234_SNP [dm6]	A	C	2.776e^-4	0.867	INTRON srp & 1 other	TF binding site mE1_TFBS_cad
3R	10511668	3R_10511668_SNP [dm3] 3R_14685946_SNP [dm6]	A	C	2.782e^-4	0.867	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15608995	3L_15608995_SNP [dm3] 3L_15615895_SNP [dm6]	G	A	2.804e^-4	0.867	INTRON comm3
2L	3768832	2L_3768832_DEL [dm3] 2L_3768832_DEL [dm6]	TA	T	2.809e^-4	0.867	UTR_3_PRIME CG43707
2L	7680808	2L_7680808_SNP [dm3] 2L_7680808_SNP [dm6]	T	C	2.814e^-4	0.867	SYNONYMOUS_CODING Myo28B1
3L	1361975	3L_1361975_SNP [dm3] 3L_1361975_SNP [dm6]	G	A	2.825e^-4	0.867	INTRON Ptp61F
3L	24047909	3L_24047909_SNP [dm3] 3L_24054809_SNP [dm6]	T	C	2.825e^-4	0.867	INTERGENIC
2R	5201274	2R_5201274_DEL [dm3] 2R_9313769_DEL [dm6]	CACCAA	C	2.827e^-4	0.867	UPSTREAM mir-987 INTRON CG13739 & 1 other
2L	10748374	2L_10748374_SNP [dm3] 2L_10748374_SNP [dm6]	T	G	2.828e^-4	0.867	INTRON CG17124	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12995727	2R_12995727_SNP [dm3] 2R_17108222_SNP [dm6]	C	T	2.831e^-4	0.867	UPSTREAM CG15611 DOWNSTREAM CG30456 INTERGENIC
X	12213827	X_12213827_SNP [dm3] X_12319794_SNP [dm6]	C	T	2.836e^-4	0.867	INTRON Ten-a
2L	18788674	2L_18788674_SNP [dm3] 2L_18788674_SNP [dm6]	G	A	2.838e^-4	0.867	INTRON ham
X	4429167	X_4429167_SNP [dm3] X_4535134_SNP [dm6]	G	A	2.840e^-4	0.867	UTR_3_PRIME CG3556 DOWNSTREAM rb INTRON CR32773
2R	9384826	2R_9384826_SNP [dm3] 2R_13497321_SNP [dm6]	A	G	2.841e^-4	0.867	INTRON drk
3R	8560723	3R_8560723_SNP [dm3] 3R_12735001_SNP [dm6]	C	A	2.842e^-4	0.867	INTERGENIC
X	2266728	X_2266728_SNP [dm3] X_2372695_SNP [dm6]	C	T	2.846e^-4	0.867	SYNONYMOUS_CODING PsGEF UTR_3_PRIME PsGEF	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26271769	3R_26271769_SNP [dm3] 3R_30446047_SNP [dm6]	A	G	2.848e^-4	0.867	UTR_3_PRIME aralar1 DOWNSTREAM aralar1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16435066	3L_16435066_SNP [dm3] 3L_16441966_SNP [dm6]	T	C	2.850e^-4	0.867	INTRON CG33158 & 1 other
2R	13945841	2R_13945841_SNP [dm3] 2R_18058336_SNP [dm6]	C	A	2.853e^-4	0.867	EXON CR45314
2L	16781333	2L_16781333_SNP [dm3] 2L_16781333_SNP [dm6]	T	A	2.856e^-4	0.867	INTRON Mhc
3L	3368850	3L_3368850_DEL [dm3] 3L_3368850_DEL [dm6]	AT	A	2.858e^-4	0.867	UPSTREAM Drs DOWNSTREAM kst INTERGENIC	regulatory region REDfly_CRMs
2L	15090448	2L_15090448_SNP [dm3] 2L_15090448_SNP [dm6]	G	T	2.859e^-4	0.867	INTRON CG15270
2L	10447698	2L_10447698_SNP [dm3] 2L_10447698_SNP [dm6]	G	A	2.863e^-4	0.867	NON_SYNONYMOUS_CODING loh INTRON loh
2R	9753998	2R_9753998_SNP [dm3] 2R_13866493_SNP [dm6]	A	G	2.864e^-4	0.867	SYNONYMOUS_CODING shot
X	11627476	X_11627476_SNP [dm3] X_11733443_SNP [dm6]	A	T	2.864e^-4	0.867	UPSTREAM inaF-B INTRON CG15221 & 1 other
X	3137316	X_3137316_SNP [dm3] X_3243283_SNP [dm6]	T	C	2.878e^-4	0.867	DOWNSTREAM ng1 & 1 other INTRON dnc
2L	9052566	2L_9052566_SNP [dm3] 2L_9052566_SNP [dm6]	C	A	2.880e^-4	0.867	UTR_3_PRIME CG31708
2R	13684324	2R_13684324_SNP [dm3] 2R_17796819_SNP [dm6]	A	G	2.880e^-4	0.867	INTRON Dhit	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	12672159	X_12672159_SNP [dm3] X_12778126_SNP [dm6]	A	T	2.885e^-4	0.867	INTRON CG32647
2L	7635986	2L_7635986_SNP [dm3] 2L_7635986_SNP [dm6]	C	A	2.890e^-4	0.867	UPSTREAM CR44799 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9753713	2R_9753713_DEL [dm3] 2R_13866208_DEL [dm6]	TT	T	2.896e^-4	0.867	INTRON shot
2R	2118578	2R_2118578_SNP [dm3] 2R_6231073_SNP [dm6]	T	A	2.897e^-4	0.867	INTRON bin3	TF binding site mE1_TFBS_HSA
2R	20978106	2R_20978106_SNP [dm3] 2R_25090583_SNP [dm6]	G	A	2.900e^-4	0.867	INTRON lov	transposable element FlyBase
3L	7534188	3L_7534188_SNP [dm3] 3L_7541088_SNP [dm6]	A	G	2.908e^-4	0.867	SYNONYMOUS_CODING CG32374 DOWNSTREAM CG32376
2R	17922608	2R_17922608_SNP [dm3] 2R_22035103_SNP [dm6]	A	C	2.911e^-4	0.867	SYNONYMOUS_CODING CG9308 INTRON CG34370
2L	17815091	2L_17815091_SNP [dm3] 2L_17815091_SNP [dm6]	A	G	2.916e^-4	0.867	INTRON CadN2
2R	11469116	2R_11469116_SNP [dm3] 2R_15581611_SNP [dm6]	C	G	2.918e^-4	0.867	INTERGENIC
2L	324232	2L_324232_SNP [dm3] 2L_324232_SNP [dm6]	C	T	2.923e^-4	0.867	INTRON Plc21C
2L	324240	2L_324240_SNP [dm3] 2L_324240_SNP [dm6]	C	T	2.923e^-4	0.867	INTRON Plc21C
3L	6023720	3L_6023720_INS [dm3] 3L_6030620_INS [dm6]	TG	GAAGGA	2.930e^-4	0.867	INTERGENIC
2L	2485600	2L_2485600_SNP [dm3] 2L_2485600_SNP [dm6]	G	C	2.941e^-4	0.867	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
3L	20979911	3L_20979911_DEL [dm3] 3L_20986811_DEL [dm6]	CGACACGCGGCCGACGAGAG...	C	2.951e^-4	0.867	INTERGENIC
3R	22420618	3R_22420618_SNP [dm3] 3R_26594896_SNP [dm6]	C	T	2.953e^-4	0.867	UTR_3_PRIME scrib INTRON scrib
3L	23809734	3L_23809734_SNP [dm3] 3L_23816634_SNP [dm6]	T	C	2.956e^-4	0.867	INTERGENIC	transposable element FlyBase
3L	1390461	3L_1390461_SNP [dm3] 3L_1390461_SNP [dm6]	A	T	2.957e^-4	0.867	INTRON Ptp61F	TF binding site mE1_TFBS_cad
2L	9058140	2L_9058140_SNP [dm3] 2L_9058140_SNP [dm6]	A	G	2.958e^-4	0.867	INTRON CG31708
3R	11817833	3R_11817833_SNP [dm3] 3R_15992111_SNP [dm6]	A	T	2.958e^-4	0.867	UPSTREAM srp INTRON srp & 1 other	regulatory region REDfly_CRMs
X	20259921	X_20259921_SNP [dm3] X_20388894_SNP [dm6]	C	T	2.962e^-4	0.867	INTERGENIC
X	20260308	X_20260308_SNP [dm3] X_20389281_SNP [dm6]	A	C	2.962e^-4	0.867	DOWNSTREAM jb INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	856850	2L_856850_INS [dm3] 2L_856850_INS [dm6]	A	AG	2.963e^-4	0.867	UPSTREAM CR45345 & 1 other DOWNSTREAM CG13949 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17382926	2R_17382926_SNP [dm3] 2R_21495421_SNP [dm6]	G	A	2.963e^-4	0.867	UTR_5_PRIME Fkbp14 INTRON Fkbp14	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10146547	X_10146547_SNP [dm3] X_10252514_SNP [dm6]	G	A	2.965e^-4	0.867	INTRON Hk
2R	11595974	2R_11595974_SNP [dm3] 2R_15708469_SNP [dm6]	G	A	2.965e^-4	0.867	INTERGENIC
3R	26082545	3R_26082545_SNP [dm3] 3R_30256823_SNP [dm6]	G	A	2.968e^-4	0.867	INTERGENIC
3R	10570721	3R_10570721_SNP [dm3] 3R_14744999_SNP [dm6]	C	T	2.972e^-4	0.867	DOWNSTREAM smp-30 INTRON jvl
X	7693309	X_7693309_SNP [dm3] X_7799276_SNP [dm6]	T	A	2.977e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_inv
3R	24744837	3R_24744837_SNP [dm3] 3R_28919115_SNP [dm6]	C	T	2.982e^-4	0.867	INTRON Doa	TF binding site mE1_TFBS_cad
3L	22239238	3L_22239238_SNP [dm3] 3L_22246138_SNP [dm6]	T	C	2.984e^-4	0.867	UTR_3_PRIME olf413
X	20258606	X_20258606_SNP [dm3] X_20387579_SNP [dm6]	C	T	2.997e^-4	0.867	INTERGENIC
2L	3267662	2L_3267662_DEL [dm3] 2L_3267662_DEL [dm6]	TCAA	T	2.998e^-4	0.867	UPSTREAM CR44484 INTERGENIC
2L	15090458	2L_15090458_INS [dm3] 2L_15090458_INS [dm6]	T	TT	2.998e^-4	0.867	INTRON CG15270
3L	22189577	3L_22189577_SNP [dm3] 3L_22196477_SNP [dm6]	C	A	3.002e^-4	0.867	INTRON olf413
2R	20963995	2R_20963995_SNP [dm3] 2R_25076472_SNP [dm6]	A	C	3.004e^-4	0.867	UPSTREAM tRNA:CR30199 & 1 other DOWNSTREAM tRNA:CR30198 INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_ttk
2L	9053884	2L_9053884_SNP [dm3] 2L_9053884_SNP [dm6]	T	A	3.004e^-4	0.867	INTRON CG31708
2L	2432218	2L_2432218_SNP [dm3] 2L_2432218_SNP [dm6]	A	C	3.006e^-4	0.867	INTRON dpp
2L	21765321	2L_21765321_SNP [dm3] 2L_21765321_SNP [dm6]	C	T	3.008e^-4	0.867	INTRON CG31612	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6068844	3L_6068844_SNP [dm3] 3L_6075744_SNP [dm6]	C	T	3.012e^-4	0.867	UPSTREAM CG13295 & 1 other INTRON CG6610	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9774006	2L_9774006_SNP [dm3] 2L_9774006_SNP [dm6]	G	C	3.021e^-4	0.867	NON_SYNONYMOUS_CODING ppk11 UPSTREAM ppk16
2R	7163593	2R_7163593_SNP [dm3] 2R_11276088_SNP [dm6]	A	T	3.027e^-4	0.867	UPSTREAM TpnC47D INTERGENIC	TF binding site mE1_TFBS_cnc
X	18877552	X_18877552_SNP [dm3] X_18983519_SNP [dm6]	A	C	3.032e^-4	0.867	INTRON CG43759
3L	4147676	3L_4147676_SNP [dm3] 3L_4147676_SNP [dm6]	C	T	3.034e^-4	0.867	INTERGENIC
2R	13674158	2R_13674158_SNP [dm3] 2R_17786653_SNP [dm6]	T	G	3.040e^-4	0.867	SYNONYMOUS_CODING aft
3R	26332937	3R_26332937_SNP [dm3] 3R_30507215_SNP [dm6]	G	A	3.048e^-4	0.867	NON_SYNONYMOUS_CODING CG15539 UPSTREAM CG34041 DOWNSTREAM mir-4908
3R	26332537	3R_26332537_SNP [dm3] 3R_30506815_SNP [dm6]	T	C	3.056e^-4	0.867	SYNONYMOUS_CODING CG15539 UPSTREAM mir-4908
3R	23303106	3R_23303106_SNP [dm3] 3R_27477384_SNP [dm6]	G	T	3.063e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18033911	2R_18033911_SNP [dm3] 2R_22146406_SNP [dm6]	G	A	3.068e^-4	0.867	INTRON a
3L	24172996	3L_24172996_SNP [dm3] 3L_24179896_SNP [dm6]	T	C	3.072e^-4	0.867	INTRON Snap25
2R	4038878	2R_4038878_SNP [dm3] 2R_8151373_SNP [dm6]	C	T	3.073e^-4	0.867	INTRON Lpin & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	8189534	2R_8189534_SNP [dm3] 2R_12302029_SNP [dm6]	T	C	3.077e^-4	0.867	DOWNSTREAM SIP2 INTRON CG8850
3L	5949177	3L_5949177_SNP [dm3] 3L_5956077_SNP [dm6]	C	G	3.084e^-4	0.867	INTERGENIC
3L	23862881	3L_23862881_SNP [dm3] 3L_23869781_SNP [dm6]	C	T	3.091e^-4	0.867	INTRON CG40470	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	5666608	2R_5666608_DEL [dm3] 2R_9779103_DEL [dm6]	TT	T	3.094e^-4	0.867	INTRON CG1688	TF binding site mE1_TFBS_chinmo
3L	11456665	3L_11456665_DEL [dm3] 3L_11463565_DEL [dm6]	TT	G	3.098e^-4	0.867	DOWNSTREAM CG6140 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14404836	3L_14404836_SNP [dm3] 3L_14411736_SNP [dm6]	T	C	3.100e^-4	0.867	NON_SYNONYMOUS_CODING CG3919	TF binding site mE1_TFBS_HSA
X	21180779	X_21180779_SNP [dm3] X_21309752_SNP [dm6]	A	G	3.101e^-4	0.867	INTRON CG1801	transposable element FlyBase
X	20260240	X_20260240_MNP [dm3] X_20389213_MNP [dm6]	TCTG	ATAT	3.106e^-4	0.867	DOWNSTREAM jb INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13930007	2R_13930007_SNP [dm3] 2R_18042502_SNP [dm6]	G	A	3.112e^-4	0.867	UTR_3_PRIME CG5773 DOWNSTREAM CG5773
3L	18333371	3L_18333371_INS [dm3] 3L_18340271_INS [dm6]	AGA	TACTTTGTTTTCT...	3.119e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_cad
3L	17958466	3L_17958466_INS [dm3] 3L_17965366_INS [dm6]	T	TATAT	3.119e^-4	0.867	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17979593	2R_17979593_SNP [dm3] 2R_22092088_SNP [dm6]	A	T	3.122e^-4	0.867	UPSTREAM CG44163 INTRON CG11073	TF binding site mE1_TFBS_chinmo
X	10775150	X_10775150_SNP [dm3] X_10881117_SNP [dm6]	A	T	3.126e^-4	0.867	INTRON Ork1
2R	19273310	2R_19273310_SNP [dm3] 2R_23385787_SNP [dm6]	T	A	3.133e^-4	0.867	UTR_3_PRIME CG30415 UPSTREAM CG30414 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5062547	2L_5062547_SNP [dm3] 2L_5062547_SNP [dm6]	C	T	3.134e^-4	0.867	UPSTREAM qtc DOWNSTREAM CR43820 INTRON qtc	TF binding site mE1_TFBS_HSA
3L	18992830	3L_18992830_SNP [dm3] 3L_18999730_SNP [dm6]	G	T	3.140e^-4	0.867	SYNONYMOUS_CODING CG3808	TF binding site mE1_TFBS_sens
X	6818767	X_6818767_INS [dm3] X_6924734_INS [dm6]	G	GGCTGCAGCTTCAG...	3.143e^-4	0.867	INTRON CG14431
X	20260346	X_20260346_SNP [dm3] X_20389319_SNP [dm6]	C	A	3.144e^-4	0.867	DOWNSTREAM jb INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12984979	2R_12984979_SNP [dm3] 2R_17097474_SNP [dm6]	T	C	3.146e^-4	0.867	UTR_5_PRIME GstS1 UPSTREAM GstS1 INTRON GstS1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2446761	2L_2446761_SNP [dm3] 2L_2446761_SNP [dm6]	A	C	3.148e^-4	0.867	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs
X	4648538	X_4648538_SNP [dm3] X_4754505_SNP [dm6]	T	A	3.162e^-4	0.867	INTERGENIC
X	13433781	X_13433781_SNP [dm3] X_13539748_SNP [dm6]	T	C	3.163e^-4	0.867	INTERGENIC
2L	16469332	2L_16469332_SNP [dm3] 2L_16469332_SNP [dm6]	T	A	3.166e^-4	0.867	INTRON dac	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7278761	3L_7278761_DEL [dm3] 3L_7285661_DEL [dm6]	GTGGGATGGAAGG...	G	3.170e^-4	0.867	INTRON unc-13-4A
2R	17296214	2R_17296214_SNP [dm3] 2R_21408709_SNP [dm6]	A	T	3.171e^-4	0.867	INTRON Sdc
3L	7534143	3L_7534143_SNP [dm3] 3L_7541043_SNP [dm6]	G	C	3.188e^-4	0.867	SYNONYMOUS_CODING CG32374 DOWNSTREAM CG32376
3L	3952559	3L_3952559_SNP [dm3] 3L_3952559_SNP [dm6]	T	G	3.188e^-4	0.867	UPSTREAM CG14984 INTERGENIC
X	12744563	X_12744563_SNP [dm3] X_12850530_SNP [dm6]	T	A	3.190e^-4	0.867	INTRON Pde9
2L	16469341	2L_16469341_INS [dm3] 2L_16469341_INS [dm6]	A	ATGTCCCATACAAA...	3.191e^-4	0.867	INTRON dac	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4523501	3L_4523501_SNP [dm3] 3L_4523501_SNP [dm6]	C	T	3.199e^-4	0.867	INTRON Tie
X	19055911	X_19055911_SNP [dm3] X_19161878_SNP [dm6]	C	T	3.202e^-4	0.867	INTRON RhoGAP18B	TF binding site mE1_TFBS_inv
3R	16033157	3R_16033157_SNP [dm3] 3R_20207435_SNP [dm6]	G	A	3.220e^-4	0.867	DOWNSTREAM CG17199 INTRON Nlg4
2L	18647198	2L_18647198_SNP [dm3] 2L_18647198_SNP [dm6]	C	T	3.231e^-4	0.867	INTRON MESR3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	22171472	2L_22171472_SNP [dm3] 2L_22171472_SNP [dm6]	G	T	3.232e^-4	0.867	INTERGENIC	transposable element FlyBase
2R	20963985	2R_20963985_SNP [dm3] 2R_25076462_SNP [dm6]	G	T	3.234e^-4	0.867	UPSTREAM tRNA:CR30199 & 1 other DOWNSTREAM tRNA:CR30198 INTRON gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_ttk
X	6894965	X_6894965_SNP [dm3] X_7000932_SNP [dm6]	C	A	3.238e^-4	0.867	UTR_3_PRIME Inx2 DOWNSTREAM Inx2 INTRON Inx7 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8458803	3L_8458803_SNP [dm3] 3L_8465703_SNP [dm6]	C	T	3.248e^-4	0.867	SYNONYMOUS_CODING Gug	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15711782	X_15711782_SNP [dm3] X_15817749_SNP [dm6]	G	A	3.249e^-4	0.867	UPSTREAM sd INTRON sd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA
2R	12995086	2R_12995086_SNP [dm3] 2R_17107581_SNP [dm6]	C	T	3.254e^-4	0.867	DOWNSTREAM CG30456 INTERGENIC
X	9734765	X_9734765_SNP [dm3] X_9840732_SNP [dm6]	C	G	3.260e^-4	0.867	INTRON CG32698
2R	2226567	2R_2226567_SNP [dm3] 2R_6339062_SNP [dm6]	T	A	3.266e^-4	0.867	INTERGENIC	transposable element FlyBase
2L	15340290	2L_15340290_SNP [dm3] 2L_15340290_SNP [dm6]	A	G	3.267e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8723126	3L_8723126_SNP [dm3] 3L_8730026_SNP [dm6]	C	T	3.270e^-4	0.867	SYNONYMOUS_CODING Cp19 DOWNSTREAM Cp15
X	11853223	X_11853223_SNP [dm3] X_11959190_SNP [dm6]	T	C	3.273e^-4	0.867	INTRON cac
2L	1393419	2L_1393419_SNP [dm3] 2L_1393419_SNP [dm6]	C	T	3.275e^-4	0.867	INTRON lea
3L	1152379	3L_1152379_SNP [dm3] 3L_1152379_SNP [dm6]	G	A	3.277e^-4	0.867	INTRON bab2
3L	23867804	3L_23867804_SNP [dm3] 3L_23874704_SNP [dm6]	G	T	3.279e^-4	0.867	INTRON CG40470
3R	22314025	3R_22314025_SNP [dm3] 3R_26488303_SNP [dm6]	C	T	3.281e^-4	0.867	INTRON plum	TF binding site mE1_TFBS_inv
2R	11410898	2R_11410898_SNP [dm3] 2R_15523393_SNP [dm6]	G	A	3.286e^-4	0.867	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11413908	2R_11413908_SNP [dm3] 2R_15526403_SNP [dm6]	C	A	3.286e^-4	0.867	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18385256	2R_18385256_SNP [dm3] 2R_22497751_SNP [dm6]	C	G	3.289e^-4	0.867	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18423979	2R_18423979_SNP [dm3] 2R_22536474_SNP [dm6]	T	A	3.291e^-4	0.867	INTRON px
2L	9705133	2L_9705133_SNP [dm3] 2L_9705133_SNP [dm6]	T	C	3.295e^-4	0.867	UPSTREAM CG31710 INTRON pelo & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	9054398	2L_9054398_SNP [dm3] 2L_9054398_SNP [dm6]	T	C	3.296e^-4	0.867	INTRON CG31708
3R	19805205	3R_19805205_SNP [dm3] 3R_23979483_SNP [dm6]	A	G	3.298e^-4	0.867	INTRON CG31140
2L	19123241	2L_19123241_SNP [dm3] 2L_19123241_SNP [dm6]	G	T	3.313e^-4	0.867	SYNONYMOUS_CODING l_2_37Cc DOWNSTREAM l_2_37Cb
2R	12105846	2R_12105846_SNP [dm3] 2R_16218341_SNP [dm6]	C	A	3.318e^-4	0.867	INTRON mrj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3234976	2R_3234976_SNP [dm3] 2R_7347471_SNP [dm6]	A	G	3.324e^-4	0.867	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
2R	9341055	2R_9341055_SNP [dm3] 2R_13453550_SNP [dm6]	C	A	3.326e^-4	0.867	DOWNSTREAM arr & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2L	5963008	2L_5963008_SNP [dm3] 2L_5963008_SNP [dm6]	T	A	3.332e^-4	0.867	DOWNSTREAM psd INTERGENIC
3L	1551348	3L_1551348_SNP [dm3] 3L_1551348_SNP [dm6]	G	C	3.333e^-4	0.867	INTRON Cct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10146938	3L_10146938_SNP [dm3] 3L_10153838_SNP [dm6]	G	A	3.336e^-4	0.867	DOWNSTREAM CG8072 INTRON dpr10
2R	10706329	2R_10706329_SNP [dm3] 2R_14818824_SNP [dm6]	C	T	3.340e^-4	0.867	SYNONYMOUS_CODING CG10202	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5583606	X_5583606_SNP [dm3] X_5689573_SNP [dm6]	T	A	3.341e^-4	0.867	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	12934341	X_12934341_SNP [dm3] X_13040308_SNP [dm6]	C	T	3.353e^-4	0.867	INTRON rad	TF binding site mE1_TFBS_HSA
X	15537647	X_15537647_DEL [dm3] X_15643614_DEL [dm6]	TT	T	3.359e^-4	0.867	UPSTREAM CG8117 INTERGENIC
3L	24201419	3L_24201419_SNP [dm3] 3L_24208319_SNP [dm6]	A	G	3.362e^-4	0.867	INTRON Snap25
3L	5817515	3L_5817515_SNP [dm3] 3L_5824415_SNP [dm6]	C	G	3.363e^-4	0.867	INTRON vn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20260291	X_20260291_INS [dm3] X_20389264_INS [dm6]	A	ACTA	3.364e^-4	0.867	DOWNSTREAM jb INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18386231	2R_18386231_SNP [dm3] 2R_22498726_SNP [dm6]	G	A	3.377e^-4	0.867	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	22326327	3L_22326327_SNP [dm3] 3L_22333227_SNP [dm6]	C	G	3.380e^-4	0.867	INTRON Ten-m
3L	392716	3L_392716_SNP [dm3] 3L_392716_SNP [dm6]	G	T	3.384e^-4	0.867	UPSTREAM CR43969 & 1 other EXON CR45378	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14282966	2R_14282966_SNP [dm3] 2R_18395461_SNP [dm6]	A	G	3.389e^-4	0.867	DOWNSTREAM Idgf5 INTERGENIC
2L	8990938	2L_8990938_DEL [dm3] 2L_8990938_DEL [dm6]	AA	A	3.393e^-4	0.867	UPSTREAM CG9555 INTERGENIC
3R	11830019	3R_11830019_SNP [dm3] 3R_16004297_SNP [dm6]	A	G	3.395e^-4	0.867	DOWNSTREAM CR42839 & 1 other INTERGENIC
3L	10069421	3L_10069421_SNP [dm3] 3L_10076321_SNP [dm6]	G	T	3.396e^-4	0.867	INTRON dpr6
2L	19125516	2L_19125516_SNP [dm3] 2L_19125516_SNP [dm6]	G	A	3.397e^-4	0.867	SYNONYMOUS_CODING l_2_37Cb	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16223736	2L_16223736_SNP [dm3] 2L_16223736_SNP [dm6]	G	A	3.403e^-4	0.867	INTERGENIC
3R	21798896	3R_21798896_SNP [dm3] 3R_25973174_SNP [dm6]	G	A	3.409e^-4	0.867	INTRON CG42261	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21786557	3R_21786557_SNP [dm3] 3R_25960835_SNP [dm6]	T	G	3.420e^-4	0.867	NON_SYNONYMOUS_CODING CG14540
X	15755211	X_15755211_SNP [dm3] X_15861178_SNP [dm6]	A	G	3.424e^-4	0.867	START_GAINED Gbeta13F UTR_5_PRIME Gbeta13F INTRON Gbeta13F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	7692903	X_7692903_SNP [dm3] X_7798870_SNP [dm6]	A	G	3.429e^-4	0.867	INTERGENIC
3R	11325715	3R_11325715_SNP [dm3] 3R_15499993_SNP [dm6]	G	T	3.431e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18374183	3L_18374183_DEL [dm3] 3L_18381083_DEL [dm6]	TT	T	3.432e^-4	0.867	INTERGENIC
3L	24250068	3L_24250068_SNP [dm3] 3L_24256968_SNP [dm6]	A	T	3.433e^-4	0.867	INTRON Snap25
2R	17924284	2R_17924284_SNP [dm3] 2R_22036779_SNP [dm6]	C	G	3.441e^-4	0.867	INTRON CG34370
2L	3267668	2L_3267668_DEL [dm3] 2L_3267668_DEL [dm6]	TAC	T	3.442e^-4	0.867	UPSTREAM CR44484 INTERGENIC
X	21310262	X_21310262_SNP [dm3] X_21439235_SNP [dm6]	G	A	3.450e^-4	0.867	INTRON CG42343	TF binding site BDTNP1_TFBS_dl
3L	3915807	3L_3915807_DEL [dm3] 3L_3915807_DEL [dm6]	GTATATATATATAG...	G	3.451e^-4	0.867	INTRON Eip63F-1
X	2800142	X_2800142_SNP [dm3] X_2906109_SNP [dm6]	G	T	3.463e^-4	0.867	INTRON kirre
2L	1504266	2L_1504266_SNP [dm3] 2L_1504266_SNP [dm6]	A	G	3.464e^-4	0.867	DOWNSTREAM CR44064 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9338923	3L_9338923_SNP [dm3] 3L_9345823_SNP [dm6]	C	T	3.465e^-4	0.867	INTRON PGRP-LC
3L	23848229	3L_23848229_SNP [dm3] 3L_23855129_SNP [dm6]	C	T	3.481e^-4	0.867	INTRON CG40470
3L	17934578	3L_17934578_SNP [dm3] 3L_17941478_SNP [dm6]	C	T	3.484e^-4	0.867	INTRON CG43174	TF binding site mE1_TFBS_HSA
X	5583821	X_5583821_SNP [dm3] X_5689788_SNP [dm6]	A	G	3.487e^-4	0.867	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	21173985	2L_21173985_SNP [dm3] 2L_21173985_SNP [dm6]	G	A	3.491e^-4	0.867	SYNONYMOUS_CODING CG31627 DOWNSTREAM Acon & 1 other
3L	15587945	3L_15587945_INS [dm3] 3L_15594845_INS [dm6]	T	TT	3.499e^-4	0.867	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14760519	2L_14760519_SNP [dm3] 2L_14760519_SNP [dm6]	T	C	3.506e^-4	0.867	UPSTREAM CG4691 INTERGENIC
X	18721999	X_18721999_SNP [dm3] X_18827966_SNP [dm6]	G	C	3.507e^-4	0.867	UTR_3_PRIME CG42450
X	2266612	X_2266612_SNP [dm3] X_2372579_SNP [dm6]	A	T	3.512e^-4	0.867	UTR_3_PRIME PsGEF INTRON PsGEF	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10315529	3R_10315529_SNP [dm3] 3R_14489807_SNP [dm6]	C	A	3.521e^-4	0.867	INTERGENIC
2R	16953673	2R_16953673_SNP [dm3] 2R_21066168_SNP [dm6]	A	G	3.522e^-4	0.867	SYNONYMOUS_CODING Cht4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3632793	X_3632793_SNP [dm3] X_3738760_SNP [dm6]	T	A	3.529e^-4	0.867	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	24291160	3L_24291160_SNP [dm3] 3L_24298060_SNP [dm6]	C	G	3.543e^-4	0.867	UTR_3_PRIME Snap25	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
X	5739583	X_5739583_SNP [dm3] X_5845550_SNP [dm6]	C	T	3.544e^-4	0.867	SYNONYMOUS_CODING CG12729
2R	19010481	2R_19010481_SNP [dm3] 2R_23122958_SNP [dm6]	T	A	3.546e^-4	0.867	DOWNSTREAM Klp59C INTERGENIC
2L	1373031	2L_1373031_SNP [dm3] 2L_1373031_SNP [dm6]	A	G	3.562e^-4	0.867	INTERGENIC
X	12213509	X_12213509_SNP [dm3] X_12319476_SNP [dm6]	C	T	3.563e^-4	0.867	INTRON Ten-a	TF binding site mE1_TFBS_cad
3R	18394061	3R_18394061_SNP [dm3] 3R_22568339_SNP [dm6]	G	T	3.570e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1166714	2L_1166714_SNP [dm3] 2L_1166714_SNP [dm6]	C	T	3.575e^-4	0.867	NON_SYNONYMOUS_CODING CG14341 DOWNSTREAM Plap & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	819178	3L_819178_SNP [dm3] 3L_819178_SNP [dm6]	T	C	3.588e^-4	0.867	INTERGENIC
2L	8003164	2L_8003164_SNP [dm3] 2L_8003164_SNP [dm6]	G	C	3.589e^-4	0.867	INTRON Wwox
2L	18603926	2L_18603926_SNP [dm3] 2L_18603926_SNP [dm6]	G	A	3.592e^-4	0.867	SYNONYMOUS_CODING CG10413
3R	22773405	3R_22773405_SNP [dm3] 3R_26947683_SNP [dm6]	A	G	3.599e^-4	0.867	UPSTREAM CG18472 & 2 others DOWNSTREAM CG14252 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11850307	2R_11850307_SNP [dm3] 2R_15962802_SNP [dm6]	C	T	3.601e^-4	0.867	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
3R	22099248	3R_22099248_SNP [dm3] 3R_26273526_SNP [dm6]	T	A	3.607e^-4	0.867	INTRON CG6154
3L	10288471	3L_10288471_SNP [dm3] 3L_10295371_SNP [dm6]	C	T	3.609e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_cad
3L	812630	3L_812630_SNP [dm3] 3L_812630_SNP [dm6]	T	A	3.618e^-4	0.867	UPSTREAM CR44537 INTERGENIC
X	7693288	X_7693288_SNP [dm3] X_7799255_SNP [dm6]	C	T	3.618e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_inv
2L	8288826	2L_8288826_SNP [dm3] 2L_8288826_SNP [dm6]	T	G	3.620e^-4	0.867	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7537059	3L_7537059_SNP [dm3] 3L_7543959_SNP [dm6]	C	A	3.621e^-4	0.867	INTERGENIC
3L	24226779	3L_24226779_SNP [dm3] 3L_24233679_SNP [dm6]	A	T	3.625e^-4	0.867	INTRON Snap25
3L	365694	3L_365694_SNP [dm3] 3L_365694_SNP [dm6]	C	T	3.626e^-4	0.867	UTR_3_PRIME CG13884 DOWNSTREAM trh & 1 other
X	12305299	X_12305299_SNP [dm3] X_12411266_SNP [dm6]	T	A	3.630e^-4	0.867	UTR_3_PRIME CG32652	TF binding site mE1_TFBS_sens
3R	17110331	3R_17110331_SNP [dm3] 3R_21284609_SNP [dm6]	C	A	3.632e^-4	0.867	DOWNSTREAM CG17298 INTRON SIFaR
X	18989898	X_18989898_SNP [dm3] X_19095865_SNP [dm6]	C	A	3.633e^-4	0.867	INTERGENIC
3L	13974642	3L_13974642_SNP [dm3] 3L_13981542_SNP [dm6]	G	A	3.636e^-4	0.867	UTR_3_PRIME CG17364 INTRON CG17364
2R	12996049	2R_12996049_SNP [dm3] 2R_17108544_SNP [dm6]	C	T	3.639e^-4	0.867	UPSTREAM CG15611 INTERGENIC
3L	5313485	3L_5313485_SNP [dm3] 3L_5320385_SNP [dm6]	A	G	3.641e^-4	0.867	INTERGENIC
3L	3949640	3L_3949640_SNP [dm3] 3L_3949640_SNP [dm6]	T	C	3.642e^-4	0.867	UPSTREAM CG14983 DOWNSTREAM CG10853 INTERGENIC
3L	16062159	3L_16062159_SNP [dm3] 3L_16069059_SNP [dm6]	A	T	3.646e^-4	0.867	INTRON Mbs	TF binding site mE1_TFBS_cad
2L	856853	2L_856853_MNP [dm3] 2L_856853_MNP [dm6]	GGT	CAA	3.650e^-4	0.867	UPSTREAM CR45345 & 1 other DOWNSTREAM CG13949 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4956011	2L_4956011_SNP [dm3] 2L_4956011_SNP [dm6]	A	C	3.664e^-4	0.867	SYNONYMOUS_CODING Marcal1 UPSTREAM Jon25Bi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	4956014	2L_4956014_SNP [dm3] 2L_4956014_SNP [dm6]	C	A	3.664e^-4	0.867	SYNONYMOUS_CODING Marcal1 UPSTREAM Jon25Bi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	3782522	2R_3782522_SNP [dm3] 2R_7895017_SNP [dm6]	C	G	3.664e^-4	0.867	INTRON CG30377
3R	13114376	3R_13114376_SNP [dm3] 3R_17288654_SNP [dm6]	A	G	3.669e^-4	0.867	EXON CR43490
3R	21400577	3R_21400577_SNP [dm3] 3R_25574855_SNP [dm6]	T	C	3.674e^-4	0.867	INTRON msi
3L	5489517	3L_5489517_DEL [dm3] 3L_5496417_DEL [dm6]	TATGT	T	3.675e^-4	0.867	INTERGENIC
3R	11816729	3R_11816729_SNP [dm3] 3R_15991007_SNP [dm6]	C	A	3.683e^-4	0.867	INTRON srp & 1 other	TF binding site mE1_TFBS_cad
X	8510598	X_8510598_SNP [dm3] X_8616565_SNP [dm6]	T	A	3.692e^-4	0.867	INTERGENIC
X	3036376	X_3036376_SNP [dm3] X_3142343_SNP [dm6]	C	T	3.703e^-4	0.867	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	9515311	2L_9515311_SNP [dm3] 2L_9515311_SNP [dm6]	T	C	3.706e^-4	0.867	SPLICE_SITE_REGION CG33298 INTRON CG33298
2L	7920028	2L_7920028_SNP [dm3] 2L_7920028_SNP [dm6]	T	C	3.706e^-4	0.867	INTRON Snoo
2L	990421	2L_990421_SNP [dm3] 2L_990421_SNP [dm6]	C	G	3.714e^-4	0.867	INTRON CR44801
3L	22238330	3L_22238330_SNP [dm3] 3L_22245230_SNP [dm6]	T	C	3.716e^-4	0.867	UTR_3_PRIME olf413
2L	18603953	2L_18603953_SNP [dm3] 2L_18603953_SNP [dm6]	G	C	3.718e^-4	0.867	SYNONYMOUS_CODING CG10413
2L	2530474	2L_2530474_SNP [dm3] 2L_2530474_SNP [dm6]	G	C	3.722e^-4	0.867	INTERGENIC
3R	6280314	3R_6280314_SNP [dm3] 3R_10454592_SNP [dm6]	T	C	3.723e^-4	0.867	INTERGENIC
2R	17000802	2R_17000802_SNP [dm3] 2R_21113297_SNP [dm6]	A	T	3.736e^-4	0.867	INTRON ktub
X	17680766	X_17680766_SNP [dm3] X_17786733_SNP [dm6]	C	T	3.736e^-4	0.867	INTERGENIC
2L	14760682	2L_14760682_SNP [dm3] 2L_14760682_SNP [dm6]	T	C	3.739e^-4	0.867	UPSTREAM CG4691 INTERGENIC
2L	15090445	2L_15090445_SNP [dm3] 2L_15090445_SNP [dm6]	A	T	3.743e^-4	0.867	INTRON CG15270
2R	9255944	2R_9255944_DEL [dm3] 2R_13368439_DEL [dm6]	GG	G	3.744e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9345977	2L_9345977_SNP [dm3] 2L_9345977_SNP [dm6]	T	A	3.747e^-4	0.867	INTERGENIC
X	5739111	X_5739111_SNP [dm3] X_5845078_SNP [dm6]	G	T	3.760e^-4	0.867	UPSTREAM CG12729 INTERGENIC
3L	10597590	3L_10597590_SNP [dm3] 3L_10604490_SNP [dm6]	A	G	3.772e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	24122041	3L_24122041_SNP [dm3] 3L_24128941_SNP [dm6]	A	G	3.775e^-4	0.867	INTRON Snap25
2R	19616522	2R_19616522_INS [dm3] 2R_23728999_INS [dm6]	A	ACCAT	3.776e^-4	0.867	INTRON Sesn
3L	4401316	3L_4401316_SNP [dm3] 3L_4401316_SNP [dm6]	A	C	3.779e^-4	0.867	INTRON slow	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	8486135	2R_8486135_SNP [dm3] 2R_12598630_SNP [dm6]	T	G	3.787e^-4	0.867	INTRON Amph
X	5739346	X_5739346_DEL [dm3] X_5845313_DEL [dm6]	AA	A	3.794e^-4	0.867	UTR_5_PRIME CG12729
2R	2800740	2R_2800740_SNP [dm3] 2R_6913235_SNP [dm6]	A	T	3.802e^-4	0.867	INTRON CG30158
2L	2485524	2L_2485524_SNP [dm3] 2L_2485524_SNP [dm6]	T	A	3.813e^-4	0.867	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2R	14164426	2R_14164426_SNP [dm3] 2R_18276921_SNP [dm6]	A	G	3.822e^-4	0.867	SYNONYMOUS_CODING Ote UPSTREAM pen-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2R	20137608	2R_20137608_SNP [dm3] 2R_24250085_SNP [dm6]	C	T	3.833e^-4	0.867	NON_SYNONYMOUS_CODING Ir60a INTRON nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19870988	2R_19870988_SNP [dm3] 2R_23983465_SNP [dm6]	C	A	3.836e^-4	0.867	INTRON Sox14	TF binding site mE1_TFBS_chinmo
2R	18656040	2R_18656040_SNP [dm3] 2R_22768535_SNP [dm6]	C	G	3.852e^-4	0.867	INTRON CG42260
X	3038058	X_3038058_DEL [dm3] X_3144025_DEL [dm6]	TT	A	3.862e^-4	0.867	INTRON N	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7537975	3L_7537975_SNP [dm3] 3L_7544875_SNP [dm6]	A	C	3.865e^-4	0.867	INTERGENIC
3R	20113119	3R_20113119_SNP [dm3] 3R_24287397_SNP [dm6]	A	G	3.895e^-4	0.867	INTRON CG6356
3L	3857273	3L_3857273_DEL [dm3] 3L_3857273_DEL [dm6]	AA	A	3.909e^-4	0.867	INTRON Awh
2L	7636060	2L_7636060_SNP [dm3] 2L_7636060_SNP [dm6]	A	G	3.911e^-4	0.867	UPSTREAM CR44799 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20268074	X_20268074_SNP [dm3] X_20397047_SNP [dm6]	T	C	3.917e^-4	0.867	INTRON HERC2	transposable element FlyBase
2R	8949066	2R_8949066_SNP [dm3] 2R_13061561_SNP [dm6]	G	A	3.942e^-4	0.867	INTRON Drl-2
X	15401657	X_15401657_SNP [dm3] X_15507624_SNP [dm6]	G	A	3.944e^-4	0.867	UPSTREAM mir-283 INTRON Gmap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	807578	3L_807578_SNP [dm3] 3L_807578_SNP [dm6]	A	G	3.945e^-4	0.867	INTERGENIC
3R	22099189	3R_22099189_SNP [dm3] 3R_26273467_SNP [dm6]	T	C	3.948e^-4	0.867	INTRON CG6154
3L	24394520	3L_24394520_SNP [dm3] 3L_24401420_SNP [dm6]	T	A	3.950e^-4	0.867	UTR_3_PRIME nvd
3L	19074492	3L_19074492_SNP [dm3] 3L_19081392_SNP [dm6]	T	C	3.958e^-4	0.867	INTRON Mkp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12345507	X_12345507_SNP [dm3] X_12451474_SNP [dm6]	T	C	3.964e^-4	0.867	INTRON Pkcdelta
3R	20389675	3R_20389675_SNP [dm3] 3R_24563953_SNP [dm6]	T	C	3.966e^-4	0.867	INTRON CG13624
2R	16291009	2R_16291009_SNP [dm3] 2R_20403504_SNP [dm6]	A	G	3.969e^-4	0.867	INTERGENIC
2L	4904047	2L_4904047_SNP [dm3] 2L_4904047_SNP [dm6]	A	T	3.976e^-4	0.867	UTR_3_PRIME CG2837 DOWNSTREAM CG2837 & 1 other
X	5583952	X_5583952_SNP [dm3] X_5689919_SNP [dm6]	T	G	4.000e^-4	0.867	UPSTREAM cv & 1 other EXON CR45525	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	18510169	3R_18510169_INS [dm3] 3R_22684447_INS [dm6]	T	TGGGAG	4.009e^-4	0.867	DOWNSTREAM CG45058 & 1 other INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	4071786	2L_4071786_SNP [dm3] 2L_4071786_SNP [dm6]	C	T	4.012e^-4	0.867	INTRON ed	TF binding site mE1_TFBS_sens
2L	15045429	2L_15045429_SNP [dm3] 2L_15045429_SNP [dm6]	G	A	4.018e^-4	0.867	SYNONYMOUS_CODING ck
2L	1422999	2L_1422999_SNP [dm3] 2L_1422999_SNP [dm6]	G	A	4.037e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5969347	3L_5969347_SNP [dm3] 3L_5976247_SNP [dm6]	T	C	4.041e^-4	0.867	UPSTREAM CG10479 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14209945	2R_14209945_SNP [dm3] 2R_18322440_SNP [dm6]	G	A	4.043e^-4	0.867	INTRON sbb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	7675748	2L_7675748_SNP [dm3] 2L_7675748_SNP [dm6]	A	T	4.046e^-4	0.867	UPSTREAM Slob INTRON Myo28B1
3L	24230294	3L_24230294_SNP [dm3] 3L_24237194_SNP [dm6]	A	T	4.047e^-4	0.867	INTRON Snap25
X	17656474	X_17656474_SNP [dm3] X_17762441_SNP [dm6]	C	A	4.053e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5007597	2L_5007597_SNP [dm3] 2L_5007597_SNP [dm6]	G	A	4.058e^-4	0.867	INTRON Rtnl1
2L	14246258	2L_14246258_SNP [dm3] 2L_14246258_SNP [dm6]	C	A	4.074e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14041199	3L_14041199_SNP [dm3] 3L_14048099_SNP [dm6]	C	A	4.078e^-4	0.867	SYNONYMOUS_CODING blue	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18471975	X_18471975_SNP [dm3] X_18577942_SNP [dm6]	C	A	4.079e^-4	0.867	INTERGENIC
2L	876854	2L_876854_SNP [dm3] 2L_876854_SNP [dm6]	A	T	4.083e^-4	0.867	UTR_3_PRIME PNUTS UPSTREAM ninaA DOWNSTREAM CG15824
X	4322495	X_4322495_SNP [dm3] X_4428462_SNP [dm6]	T	C	4.083e^-4	0.867	NON_SYNONYMOUS_CODING bi INTRON CR32773	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	22403878	2L_22403878_SNP [dm3] 2L_22403878_SNP [dm6]	G	A	4.085e^-4	0.867	INTERGENIC	transposable element FlyBase
3L	24048028	3L_24048028_DEL [dm3] 3L_24054928_DEL [dm6]	CC	C	4.101e^-4	0.867	INTERGENIC
2R	17121320	2R_17121320_SNP [dm3] 2R_21233815_SNP [dm6]	G	C	4.108e^-4	0.867	INTRON ASPP
3L	24230872	3L_24230872_SNP [dm3] 3L_24237772_SNP [dm6]	C	T	4.115e^-4	0.867	INTRON Snap25
3L	7505414	3L_7505414_SNP [dm3] 3L_7512314_SNP [dm6]	G	C	4.119e^-4	0.867	SYNONYMOUS_CODING CG7546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	23852480	3L_23852480_SNP [dm3] 3L_23859380_SNP [dm6]	T	A	4.134e^-4	0.867	INTRON CG40470
3R	6001223	3R_6001223_SNP [dm3] 3R_10175501_SNP [dm6]	A	G	4.141e^-4	0.867	INTRON CG12814
2L	18603977	2L_18603977_SNP [dm3] 2L_18603977_SNP [dm6]	C	A	4.144e^-4	0.867	SYNONYMOUS_CODING CG10413
3R	9663396	3R_9663396_SNP [dm3] 3R_13837674_SNP [dm6]	G	A	4.147e^-4	0.867	SYNONYMOUS_CODING Nsf2 DOWNSTREAM CG31495	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	6662239	3L_6662239_SNP [dm3] 3L_6669139_SNP [dm6]	T	G	4.147e^-4	0.867	INTERGENIC
2R	5198893	2R_5198893_SNP [dm3] 2R_9311388_SNP [dm6]	C	T	4.152e^-4	0.867	UTR_3_PRIME CG13954 & 1 other
X	5583675	X_5583675_SNP [dm3] X_5689642_SNP [dm6]	A	C	4.160e^-4	0.867	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	5583839	X_5583839_SNP [dm3] X_5689806_SNP [dm6]	G	A	4.166e^-4	0.867	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	20548627	3R_20548627_SNP [dm3] 3R_24722905_SNP [dm6]	A	G	4.167e^-4	0.867	UPSTREAM snoRNA:Me18S-C1280 INTRON tok
2R	18385229	2R_18385229_SNP [dm3] 2R_22497724_SNP [dm6]	G	A	4.168e^-4	0.867	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8219097	2L_8219097_SNP [dm3] 2L_8219097_SNP [dm6]	G	A	4.169e^-4	0.867	INTRON Snx6
X	10748670	X_10748670_SNP [dm3] X_10854637_SNP [dm6]	T	A	4.177e^-4	0.867	UTR_5_PRIME feo DOWNSTREAM sofe	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	6893009	X_6893009_SNP [dm3] X_6998976_SNP [dm6]	G	T	4.184e^-4	0.867	START_GAINED Inx2 UTR_5_PRIME Inx2 INTRON Inx7	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3863607	2R_3863607_SNP [dm3] 2R_7976102_SNP [dm6]	G	C	4.196e^-4	0.867	SYNONYMOUS_CODING ACC
3L	1480952	3L_1480952_SNP [dm3] 3L_1480952_SNP [dm6]	C	G	4.197e^-4	0.867	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	14028219	3L_14028219_SNP [dm3] 3L_14035119_SNP [dm6]	G	A	4.201e^-4	0.867	SYNONYMOUS_CODING CG6661 DOWNSTREAM CG6650 EXON pncr014:3L	TF binding site mE1_TFBS_chinmo
3L	1451014	3L_1451014_SNP [dm3] 3L_1451014_SNP [dm6]	C	A	4.211e^-4	0.867	INTRON Ptp61F
3L	24200845	3L_24200845_SNP [dm3] 3L_24207745_SNP [dm6]	T	C	4.212e^-4	0.867	INTRON Snap25
2L	7636061	2L_7636061_SNP [dm3] 2L_7636061_SNP [dm6]	G	C	4.219e^-4	0.867	UPSTREAM CR44799 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16469345	2L_16469345_SNP [dm3] 2L_16469345_SNP [dm6]	A	T	4.225e^-4	0.867	INTRON dac	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11111480	3L_11111480_SNP [dm3] 3L_11118380_SNP [dm6]	A	G	4.228e^-4	0.867	INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	683464	2L_683464_SNP [dm3] 2L_683464_SNP [dm6]	T	G	4.229e^-4	0.867	INTRON ds
X	9734714	X_9734714_SNP [dm3] X_9840681_SNP [dm6]	T	A	4.230e^-4	0.867	INTRON CG32698
3R	13924283	3R_13924283_SNP [dm3] 3R_18098561_SNP [dm6]	A	G	4.231e^-4	0.867	INTRON sr
X	20259250	X_20259250_DEL [dm3] X_20388223_DEL [dm6]	AA	A	4.246e^-4	0.867	INTERGENIC
2L	3387357	2L_3387357_SNP [dm3] 2L_3387357_SNP [dm6]	A	T	4.250e^-4	0.867	UTR_3_PRIME Sfp23F UPSTREAM CR45301 DOWNSTREAM CG42460
2L	1111226	2L_1111226_DEL [dm3] 2L_1111226_DEL [dm6]	TCCG	T	4.260e^-4	0.867	INTRON CG14339
3L	11075605	3L_11075605_SNP [dm3] 3L_11082505_SNP [dm6]	T	G	4.268e^-4	0.867	INTRON JIL-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9223256	3L_9223256_SNP [dm3] 3L_9230156_SNP [dm6]	C	A	4.275e^-4	0.867	INTERGENIC
2R	6918368	2R_6918368_SNP [dm3] 2R_11030863_SNP [dm6]	C	T	4.280e^-4	0.867	INTRON luna
3L	24255689	3L_24255689_SNP [dm3] 3L_24262589_SNP [dm6]	A	G	4.283e^-4	0.867	INTRON Snap25
3L	24282201	3L_24282201_SNP [dm3] 3L_24289101_SNP [dm6]	A	G	4.283e^-4	0.867	INTRON Snap25
3L	24323803	3L_24323803_SNP [dm3] 3L_24330703_SNP [dm6]	T	C	4.283e^-4	0.867	INTRON nvd
3L	24357482	3L_24357482_SNP [dm3] 3L_24364382_SNP [dm6]	G	C	4.283e^-4	0.867	INTRON nvd
2R	15872681	2R_15872681_SNP [dm3] 2R_19985176_SNP [dm6]	T	C	4.284e^-4	0.867	DOWNSTREAM CG8654 INTERGENIC
3L	20842581	3L_20842581_INS [dm3] 3L_20849481_INS [dm6]	GG	TCA	4.286e^-4	0.867	INTRON CG32432
3L	571128	3L_571128_SNP [dm3] 3L_571128_SNP [dm6]	A	G	4.292e^-4	0.867	SYNONYMOUS_CODING hipk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15403330	2L_15403330_SNP [dm3] 2L_15403330_SNP [dm6]	T	C	4.300e^-4	0.867	INTERGENIC
2R	2633768	2R_2633768_SNP [dm3] 2R_6746263_SNP [dm6]	T	A	4.304e^-4	0.867	UPSTREAM CG3267 DOWNSTREAM phtf INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	19121400	2L_19121400_SNP [dm3] 2L_19121400_SNP [dm6]	A	G	4.306e^-4	0.867	UTR_3_PRIME l_2_37Cc DOWNSTREAM l_2_37Cc	regulatory region REDfly_CRMs
3L	13420081	3L_13420081_INS [dm3] 3L_13426981_INS [dm6]	T	TT	4.312e^-4	0.867	UPSTREAM CG14105 INTERGENIC
3L	3547671	3L_3547671_SNP [dm3] 3L_3547671_SNP [dm6]	T	C	4.312e^-4	0.867	INTRON Eip63E
3L	12240630	3L_12240630_SNP [dm3] 3L_12247530_SNP [dm6]	C	A	4.330e^-4	0.867	INTRON app
3L	5880260	3L_5880260_SNP [dm3] 3L_5887160_SNP [dm6]	A	T	4.332e^-4	0.867	INTERGENIC
2R	9424736	2R_9424736_SNP [dm3] 2R_13537231_SNP [dm6]	T	C	4.339e^-4	0.867	DOWNSTREAM CG6145 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4169304	2L_4169304_SNP [dm3] 2L_4169304_SNP [dm6]	A	C	4.344e^-4	0.867	INTERGENIC
3L	23845571	3L_23845571_SNP [dm3] 3L_23852471_SNP [dm6]	C	G	4.345e^-4	0.867	INTRON CG40470
3L	24309128	3L_24309128_SNP [dm3] 3L_24316028_SNP [dm6]	G	C	4.347e^-4	0.867	INTERGENIC
3R	25979397	3R_25979397_SNP [dm3] 3R_30153675_SNP [dm6]	G	A	4.349e^-4	0.867	DOWNSTREAM CG15529 INTRON CG11498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	9251110	2L_9251110_DEL [dm3] 2L_9251110_DEL [dm6]	CGTGCGAAAATACATTTTAA...	C	4.351e^-4	0.867	UPSTREAM aust DOWNSTREAM CR43734 & 2 others INTERGENIC
2R	20959260	2R_20959260_SNP [dm3] 2R_25071737_SNP [dm6]	T	G	4.351e^-4	0.867	DOWNSTREAM gol INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	19518967	2R_19518967_SNP [dm3] 2R_23631444_SNP [dm6]	T	A	4.366e^-4	0.867	INTERGENIC	silencer mE1_HDAC_PRE
X	5583651	X_5583651_SNP [dm3] X_5689618_SNP [dm6]	A	T	4.383e^-4	0.867	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	26238065	3R_26238065_SNP [dm3] 3R_30412343_SNP [dm6]	T	C	4.392e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15797191	2L_15797191_SNP [dm3] 2L_15797191_SNP [dm6]	G	A	4.393e^-4	0.867	INTERGENIC
2R	2957593	2R_2957593_SNP [dm3] 2R_7070088_SNP [dm6]	T	A	4.394e^-4	0.867	UPSTREAM tRNA:CR30298 DOWNSTREAM CG12831 & 2 others INTERGENIC
X	1270408	X_1270408_INS [dm3] X_1376375_INS [dm6]	T	TTTT	4.398e^-4	0.867	INTRON AMPKalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	8415459	3L_8415459_SNP [dm3] 3L_8422359_SNP [dm6]	C	G	4.407e^-4	0.867	UPSTREAM CG32354 INTERGENIC
3R	12008461	3R_12008461_DEL [dm3] 3R_16182739_DEL [dm6]	TTGGA	T	4.415e^-4	0.867	INTRON CG8927
2L	4465330	2L_4465330_SNP [dm3] 2L_4465330_SNP [dm6]	C	A	4.421e^-4	0.867	DOWNSTREAM CG15436 INTRON CG17840	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_Ubx
X	8708056	X_8708056_SNP [dm3] X_8814023_SNP [dm6]	G	A	4.426e^-4	0.867	INTERGENIC
3R	16007403	3R_16007403_SNP [dm3] 3R_20181681_SNP [dm6]	T	C	4.428e^-4	0.867	INTERGENIC
3R	177729	3R_177729_SNP [dm3] 3R_4352007_SNP [dm6]	A	T	4.436e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_HSA
3L	24123972	3L_24123972_SNP [dm3] 3L_24130872_SNP [dm6]	G	A	4.438e^-4	0.867	INTRON Snap25
X	17118935	X_17118935_SNP [dm3] X_17224902_SNP [dm6]	A	T	4.441e^-4	0.867	DOWNSTREAM CG10598 INTERGENIC
3R	26333192	3R_26333192_SNP [dm3] 3R_30507470_SNP [dm6]	T	A	4.443e^-4	0.867	SYNONYMOUS_CODING CG15539 UPSTREAM CG34041 DOWNSTREAM mir-4908
3L	23851198	3L_23851198_SNP [dm3] 3L_23858098_SNP [dm6]	T	A	4.446e^-4	0.867	INTRON CG40470
X	7693362	X_7693362_SNP [dm3] X_7799329_SNP [dm6]	G	A	4.452e^-4	0.867	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9054182	2L_9054182_SNP [dm3] 2L_9054182_SNP [dm6]	T	A	4.453e^-4	0.867	INTRON CG31708
3R	3608742	3R_3608742_SNP [dm3] 3R_7783020_SNP [dm6]	G	A	4.456e^-4	0.867	DOWNSTREAM CG18745 INTRON CG18747
3R	26333278	3R_26333278_SNP [dm3] 3R_30507556_SNP [dm6]	C	T	4.456e^-4	0.867	SPLICE_SITE_REGION CG15539 UPSTREAM CG34041 DOWNSTREAM mir-4908 INTRON CG15539
X	6890251	X_6890251_SNP [dm3] X_6996218_SNP [dm6]	C	G	4.460e^-4	0.867	INTRON Inx7 EXON CR43837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17760774	2R_17760774_SNP [dm3] 2R_21873269_SNP [dm6]	G	C	4.460e^-4	0.867	INTRON Fili
3L	22245002	3L_22245002_SNP [dm3] 3L_22251902_SNP [dm6]	A	T	4.460e^-4	0.867	INTERGENIC
2L	14760501	2L_14760501_SNP [dm3] 2L_14760501_SNP [dm6]	C	T	4.465e^-4	0.867	UPSTREAM CG4691 INTERGENIC
3R	10728895	3R_10728895_SNP [dm3] 3R_14903173_SNP [dm6]	T	C	4.467e^-4	0.867	INTRON VhaPPA1-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	16062137	3L_16062137_INS [dm3] 3L_16069037_INS [dm6]	T	TAT	4.474e^-4	0.867	INTRON Mbs	TF binding site mE1_TFBS_cad
2R	13499941	2R_13499941_SNP [dm3] 2R_17612436_SNP [dm6]	C	T	4.480e^-4	0.867	INTRON CG10936
X	12398544	X_12398544_DEL [dm3] X_12504511_DEL [dm6]	ATT	A	4.520e^-4	0.867	INTRON CG2556
2L	8003139	2L_8003139_SNP [dm3] 2L_8003139_SNP [dm6]	A	T	4.524e^-4	0.867	INTRON Wwox
3L	24286439	3L_24286439_SNP [dm3] 3L_24293339_SNP [dm6]	A	G	4.535e^-4	0.867	INTRON Snap25
2R	5464885	2R_5464885_SNP [dm3] 2R_9577380_SNP [dm6]	T	C	4.542e^-4	0.867	UPSTREAM CG1814 & 1 other INTRON Not1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	23884629	3L_23884629_SNP [dm3] 3L_23891529_SNP [dm6]	A	G	4.549e^-4	0.867	INTRON CG40470
2R	18981932	2R_18981932_SNP [dm3] 2R_23094409_SNP [dm6]	T	C	4.556e^-4	0.867	UPSTREAM CG9876 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	24229960	3L_24229960_SNP [dm3] 3L_24236860_SNP [dm6]	C	T	4.557e^-4	0.867	INTRON Snap25
2R	7379005	2R_7379005_SNP [dm3] 2R_11491500_SNP [dm6]	T	C	4.557e^-4	0.867	INTRON inv
3L	11007191	3L_11007191_SNP [dm3] 3L_11014091_SNP [dm6]	T	C	4.562e^-4	0.867	INTERGENIC
2L	8197575	2L_8197575_SNP [dm3] 2L_8197575_SNP [dm6]	G	A	4.563e^-4	0.867	UPSTREAM CG8475 DOWNSTREAM CR44116 INTRON CG8460	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15968192	2R_15968192_SNP [dm3] 2R_20080687_SNP [dm6]	C	T	4.564e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	5583271	X_5583271_SNP [dm3] X_5689238_SNP [dm6]	T	A	4.570e^-4	0.867	UPSTREAM cv DOWNSTREAM CR45525 INTRON CG3160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	16461864	2L_16461864_SNP [dm3] 2L_16461864_SNP [dm6]	C	G	4.579e^-4	0.867	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	16091243	3R_16091243_SNP [dm3] 3R_20265521_SNP [dm6]	T	G	4.588e^-4	0.867	INTRON cic
2L	8264236	2L_8264236_SNP [dm3] 2L_8264236_SNP [dm6]	T	A	4.588e^-4	0.867	INTRON Btk29A
2R	14912732	2R_14912732_SNP [dm3] 2R_19025227_SNP [dm6]	C	T	4.589e^-4	0.867	INTRON 5-HT1B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15521758	2L_15521758_SNP [dm3] 2L_15521758_SNP [dm6]	C	G	4.595e^-4	0.867	UPSTREAM CR43761 INTERGENIC	TF binding site mE1_TFBS_inv
X	6541526	X_6541526_INS [dm3] X_6647493_INS [dm6]	C	CCTCC	4.597e^-4	0.867	INTRON pigs
2R	7936039	2R_7936039_SNP [dm3] 2R_12048534_SNP [dm6]	A	G	4.599e^-4	0.867	SYNONYMOUS_CODING Drep-1
2L	1162821	2L_1162821_SNP [dm3] 2L_1162821_SNP [dm6]	C	A	4.601e^-4	0.867	INTRON CG5080	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6092374	X_6092374_SNP [dm3] X_6198341_SNP [dm6]	T	A	4.618e^-4	0.867	SYNONYMOUS_CODING CG32751 DOWNSTREAM CG43090
2L	1516062	2L_1516062_SNP [dm3] 2L_1516062_SNP [dm6]	T	G	4.621e^-4	0.867	DOWNSTREAM CG18132 INTERGENIC
3L	24320467	3L_24320467_SNP [dm3] 3L_24327367_SNP [dm6]	C	T	4.627e^-4	0.867	INTRON nvd
3L	24316737	3L_24316737_SNP [dm3] 3L_24323637_SNP [dm6]	C	T	4.628e^-4	0.867	INTERGENIC
X	6894870	X_6894870_SNP [dm3] X_7000837_SNP [dm6]	G	A	4.633e^-4	0.867	UTR_3_PRIME Inx2 DOWNSTREAM Inx2 INTRON Inx7 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5897316	3L_5897316_SNP [dm3] 3L_5904216_SNP [dm6]	A	G	4.636e^-4	0.867	UTR_3_PRIME CG10486 UPSTREAM CG32413
X	7693242	X_7693242_SNP [dm3] X_7799209_SNP [dm6]	C	A	4.646e^-4	0.867	INTERGENIC
2L	14760649	2L_14760649_SNP [dm3] 2L_14760649_SNP [dm6]	G	A	4.656e^-4	0.867	UPSTREAM CG4691 INTERGENIC
2L	1504306	2L_1504306_SNP [dm3] 2L_1504306_SNP [dm6]	C	T	4.661e^-4	0.867	DOWNSTREAM CR44064 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8215508	2R_8215508_SNP [dm3] 2R_12328003_SNP [dm6]	C	G	4.662e^-4	0.867	SYNONYMOUS_CODING garz	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	20961028	2R_20961028_INS [dm3] 2R_25073505_INS [dm6]	C	CTCCAGCCACAGGATCCGC...	4.675e^-4	0.867	CODON_INSERTION gol UTR_3_PRIME gol DOWNSTREAM gol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17567542	X_17567542_SNP [dm3] X_17673509_SNP [dm6]	A	G	4.675e^-4	0.867	SYNONYMOUS_CODING chas	TF binding site mE1_TFBS_chinmo
2R	2919613	2R_2919613_SNP [dm3] 2R_7032108_SNP [dm6]	C	G	4.693e^-4	0.867	INTRON Tsp42Eg
2L	8264474	2L_8264474_SNP [dm3] 2L_8264474_SNP [dm6]	C	T	4.699e^-4	0.867	INTRON Btk29A
X	11574857	X_11574857_SNP [dm3] X_11680824_SNP [dm6]	G	C	4.702e^-4	0.867	INTRON bif	TF binding site BDTNP1_TFBS_dl
2L	7956422	2L_7956422_SNP [dm3] 2L_7956422_SNP [dm6]	T	A	4.705e^-4	0.867	INTRON Snoo	TF binding site mE1_TFBS_inv
X	9023738	X_9023738_SNP [dm3] X_9129705_SNP [dm6]	G	T	4.709e^-4	0.867	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11531796	2L_11531796_SNP [dm3] 2L_11531796_SNP [dm6]	G	T	4.720e^-4	0.867	UPSTREAM CG34162 & 1 other DOWNSTREAM CR42743 INTERGENIC
3R	10570299	3R_10570299_SNP [dm3] 3R_14744577_SNP [dm6]	A	T	4.721e^-4	0.867	INTRON jvl
2R	9351004	2R_9351004_SNP [dm3] 2R_13463499_SNP [dm6]	C	A	4.740e^-4	0.867	INTRON arr
3L	3583339	3L_3583339_SNP [dm3] 3L_3583339_SNP [dm6]	T	G	4.745e^-4	0.867	INTRON Eip63E	TF binding site mE1_TFBS_inv
2L	21182773	2L_21182773_SNP [dm3] 2L_21182773_SNP [dm6]	G	T	4.752e^-4	0.867	UTR_3_PRIME Mcm10 & 1 other
3L	24198881	3L_24198881_SNP [dm3] 3L_24205781_SNP [dm6]	T	G	4.761e^-4	0.867	INTRON Snap25
3R	7824984	3R_7824984_SNP [dm3] 3R_11999262_SNP [dm6]	G	A	4.765e^-4	0.867	UPSTREAM Ect3 INTRON Tk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4403302	2L_4403302_SNP [dm3] 2L_4403302_SNP [dm6]	T	G	4.766e^-4	0.867	START_GAINED Dim1 UTR_5_PRIME Dim1 DOWNSTREAM CG15431 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	14028483	3L_14028483_SNP [dm3] 3L_14035383_SNP [dm6]	C	T	4.766e^-4	0.867	SYNONYMOUS_CODING CG6661 DOWNSTREAM CG6650 EXON pncr014:3L	TF binding site mE1_TFBS_chinmo
2R	17927692	2R_17927692_SNP [dm3] 2R_22040187_SNP [dm6]	G	A	4.767e^-4	0.867	UPSTREAM CG34370 INTERGENIC
2L	18603947	2L_18603947_SNP [dm3] 2L_18603947_SNP [dm6]	A	G	4.772e^-4	0.867	SYNONYMOUS_CODING CG10413
X	15801998	X_15801998_SNP [dm3] X_15907965_SNP [dm6]	A	T	4.775e^-4	0.867	SYNONYMOUS_CODING CycD	TF binding site mE1_TFBS_sens
2L	5683694	2L_5683694_SNP [dm3] 2L_5683694_SNP [dm6]	C	G	4.778e^-4	0.867	INTERGENIC
3R	4022455	3R_4022455_SNP [dm3] 3R_8196733_SNP [dm6]	T	C	4.794e^-4	0.867	DOWNSTREAM CR43302 INTERGENIC	TF binding site mE1_TFBS_sens
3L	24314633	3L_24314633_SNP [dm3] 3L_24321533_SNP [dm6]	A	G	4.795e^-4	0.867	INTERGENIC
3L	22256119	3L_22256119_SNP [dm3] 3L_22263019_SNP [dm6]	A	T	4.796e^-4	0.867	UPSTREAM Ddx1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13974640	3L_13974640_SNP [dm3] 3L_13981540_SNP [dm6]	G	A	4.799e^-4	0.867	UTR_3_PRIME CG17364 INTRON CG17364
X	15648206	X_15648206_SNP [dm3] X_15754173_SNP [dm6]	G	A	4.802e^-4	0.867	SYNONYMOUS_CODING Graf
3R	9666782	3R_9666782_SNP [dm3] 3R_13841060_SNP [dm6]	A	G	4.805e^-4	0.867	INTERGENIC
3R	11988802	3R_11988802_SNP [dm3] 3R_16163080_SNP [dm6]	G	A	4.811e^-4	0.867	INTRON CG6006
2R	8361911	2R_8361911_SNP [dm3] 2R_12474406_SNP [dm6]	A	T	4.812e^-4	0.867	UPSTREAM Dh44-R2 DOWNSTREAM CG8550 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	9055447	2L_9055447_SNP [dm3] 2L_9055447_SNP [dm6]	G	A	4.813e^-4	0.867	INTRON CG31708
3L	15481967	3L_15481967_SNP [dm3] 3L_15488867_SNP [dm6]	T	G	4.824e^-4	0.867	INTERGENIC
2R	18384476	2R_18384476_SNP [dm3] 2R_22496971_SNP [dm6]	G	C	4.829e^-4	0.867	SYNONYMOUS_CODING px INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19730658	X_19730658_SNP [dm3] X_19836625_SNP [dm6]	G	A	4.840e^-4	0.867	NON_SYNONYMOUS_CODING pico UTR_5_PRIME pico	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10481786	2L_10481786_SNP [dm3] 2L_10481786_SNP [dm6]	A	G	4.843e^-4	0.867	SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2
2L	19159525	2L_19159525_SNP [dm3] 2L_19159525_SNP [dm6]	C	A	4.845e^-4	0.867	UPSTREAM CR44977 INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_Trl
3R	22099175	3R_22099175_SNP [dm3] 3R_26273453_SNP [dm6]	A	T	4.845e^-4	0.867	INTRON CG6154

By genomic position
Variant impact
Gene name

AVG PPL1 neurons phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results