DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.560e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3137 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	14752721	X_14752721_SNP [dm3] X_14858688_SNP [dm6]	T	C	1.781e^-7	0.167	INTRON Flo2
3R	5677913	3R_5677913_SNP [dm3] 3R_9852191_SNP [dm6]	G	C	2.169e^-7	0.167	INTRON Teh1
3L	3517756	3L_3517756_SNP [dm3] 3L_3517756_SNP [dm6]	G	A	3.348e^-7	0.167	INTRON Eip63E
3R	9778519	3R_9778519_SNP [dm3] 3R_13952797_SNP [dm6]	T	A	3.788e^-7	0.167	INTERGENIC
3R	9778523	3R_9778523_SNP [dm3] 3R_13952801_SNP [dm6]	T	C	6.203e^-7	0.176	INTERGENIC
3R	9778525	3R_9778525_SNP [dm3] 3R_13952803_SNP [dm6]	C	A	6.709e^-7	0.176	INTERGENIC
3L	3517725	3L_3517725_SNP [dm3] 3L_3517725_SNP [dm6]	G	A	6.994e^-7	0.176	INTRON Eip63E	TF binding site BDTNP1_TFBS_twi
3R	11095794	3R_11095794_SNP [dm3] 3R_15270072_SNP [dm6]	C	A	1.418e^-6	0.313	SYNONYMOUS_CODING Zip88E DOWNSTREAM Cp190	TF binding site mE1_TFBS_HSA
X	6951599	X_6951599_SNP [dm3] X_7057566_SNP [dm6]	G	A	1.901e^-6	0.373	INTRON CG12541
3R	9778522	3R_9778522_SNP [dm3] 3R_13952800_SNP [dm6]	T	C	2.135e^-6	0.376	INTERGENIC
3R	22251390	3R_22251390_SNP [dm3] 3R_26425668_SNP [dm6]	G	A	3.614e^-6	0.376	UPSTREAM CG6503 INTRON CR31084 & 1 other
2R	18424802	2R_18424802_SNP [dm3] 2R_22537297_SNP [dm6]	G	A	3.810e^-6	0.376	SYNONYMOUS_CODING px
3L	4707959	3L_4707959_SNP [dm3] 3L_4707959_SNP [dm6]	G	A	3.929e^-6	0.376	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19426911	3R_19426911_DEL [dm3] 3R_23601189_DEL [dm6]	TATTTTCAGGCGCATAATGC...	C	4.056e^-6	0.376	DOWNSTREAM tRNA:CR31143 INTERGENIC
2L	19876938	2L_19876938_SNP [dm3] 2L_19876938_SNP [dm6]	G	T	4.153e^-6	0.376	INTRON sick	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18096353	2R_18096353_SNP [dm3] 2R_22208848_SNP [dm6]	C	T	4.791e^-6	0.376	UTR_3_PRIME CG3264 UPSTREAM CG3290 DOWNSTREAM CG3264
X	14752740	X_14752740_SNP [dm3] X_14858707_SNP [dm6]	A	G	4.813e^-6	0.376	INTRON Flo2
2R	10101096	2R_10101096_DEL [dm3] 2R_14213591_DEL [dm6]	ATTTT	A	4.861e^-6	0.376	INTERGENIC
2R	17834155	2R_17834155_SNP [dm3] 2R_21946650_SNP [dm6]	G	A	5.551e^-6	0.376	DOWNSTREAM Fili INTERGENIC
2R	2435847	2R_2435847_SNP [dm3] 2R_6548342_SNP [dm6]	A	C	5.559e^-6	0.376	INTRON jing	TF binding site mE1_TFBS_chinmo
X	17674825	X_17674825_SNP [dm3] X_17780792_SNP [dm6]	C	G	5.763e^-6	0.376	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17674879	X_17674879_SNP [dm3] X_17780846_SNP [dm6]	A	G	5.763e^-6	0.376	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10010277	X_10010277_SNP [dm3] X_10116244_SNP [dm6]	G	A	6.365e^-6	0.376	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	8129596	2R_8129596_SNP [dm3] 2R_12242091_SNP [dm6]	C	T	6.442e^-6	0.376	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3R	5344611	3R_5344611_SNP [dm3] 3R_9518889_SNP [dm6]	C	T	7.883e^-6	0.376	SYNONYMOUS_CODING JHDM2 INTRON CG8176	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10486585	3L_10486585_SNP [dm3] 3L_10493485_SNP [dm6]	C	A	7.927e^-6	0.376	DOWNSTREAM S-Lap4 INTRON A2bp1
3L	10486518	3L_10486518_SNP [dm3] 3L_10493418_SNP [dm6]	C	A	8.471e^-6	0.376	DOWNSTREAM S-Lap4 INTRON A2bp1	TF binding site mE1_TFBS_inv
X	14753047	X_14753047_SNP [dm3] X_14859014_SNP [dm6]	T	G	9.991e^-6	0.376	INTRON Flo2
3L	10486489	3L_10486489_SNP [dm3] 3L_10493389_SNP [dm6]	G	C	1.038e^-5	0.376	DOWNSTREAM S-Lap4 INTRON A2bp1	TF binding site mE1_TFBS_inv
3L	10486616	3L_10486616_SNP [dm3] 3L_10493516_SNP [dm6]	A	C	1.038e^-5	0.376	DOWNSTREAM S-Lap4 INTRON A2bp1
3L	5252902	3L_5252902_DEL [dm3] 3L_5259802_DEL [dm6]	TTTG	A	1.061e^-5	0.376	INTRON shep
3R	4320943	3R_4320943_SNP [dm3] 3R_8495221_SNP [dm6]	C	A	1.146e^-5	0.376	INTERGENIC
2R	8119486	2R_8119486_SNP [dm3] 2R_12231981_SNP [dm6]	C	A	1.178e^-5	0.376	INTERGENIC
2R	8130175	2R_8130175_SNP [dm3] 2R_12242670_SNP [dm6]	A	T	1.178e^-5	0.376	NON_SYNONYMOUS_CODING CG43316 DOWNSTREAM CG43315
2R	8132105	2R_8132105_SNP [dm3] 2R_12244600_SNP [dm6]	C	A	1.178e^-5	0.376	NON_SYNONYMOUS_CODING CG43244
2R	17928437	2R_17928437_SNP [dm3] 2R_22040932_SNP [dm6]	C	T	1.191e^-5	0.376	DOWNSTREAM PpD5 INTERGENIC
3L	24527091	3L_24527091_DEL [dm3] 3L_24533992_DEL [dm6]	ATAA	A	1.221e^-5	0.376	UPSTREAM CR12460 INTERGENIC
2R	8123758	2R_8123758_SNP [dm3] 2R_12236253_SNP [dm6]	G	A	1.286e^-5	0.376	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	8132370	2R_8132370_SNP [dm3] 2R_12244865_SNP [dm6]	G	A	1.286e^-5	0.376	UPSTREAM CG43244 INTERGENIC
2R	8136797	2R_8136797_SNP [dm3] 2R_12249292_SNP [dm6]	G	A	1.286e^-5	0.376	INTERGENIC
3R	13116954	3R_13116954_SNP [dm3] 3R_17291232_SNP [dm6]	G	C	1.287e^-5	0.376	INTERGENIC
X	5925061	X_5925061_SNP [dm3] X_6031028_SNP [dm6]	T	G	1.331e^-5	0.376	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12775904	X_12775904_SNP [dm3] X_12881871_SNP [dm6]	T	C	1.368e^-5	0.376	INTRON Pde9
X	12775924	X_12775924_SNP [dm3] X_12881891_SNP [dm6]	T	A	1.368e^-5	0.376	INTRON Pde9
X	12775926	X_12775926_SNP [dm3] X_12881893_SNP [dm6]	T	A	1.368e^-5	0.376	INTRON Pde9
X	12775928	X_12775928_SNP [dm3] X_12881895_SNP [dm6]	T	A	1.368e^-5	0.376	INTRON Pde9
3R	26184449	3R_26184449_SNP [dm3] 3R_30358727_SNP [dm6]	C	T	1.391e^-5	0.376	INTRON hdc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12775266	X_12775266_SNP [dm3] X_12881233_SNP [dm6]	A	T	1.456e^-5	0.376	INTRON Pde9
2R	8153632	2R_8153632_SNP [dm3] 2R_12266127_SNP [dm6]	G	A	1.463e^-5	0.376	INTRON Cam
3R	26184459	3R_26184459_SNP [dm3] 3R_30358737_SNP [dm6]	C	T	1.566e^-5	0.376	INTRON hdc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	24498124	3L_24498124_SNP [dm3] 3L_24505024_SNP [dm6]	G	A	1.581e^-5	0.376	INTERGENIC
3L	24508875	3L_24508875_SNP [dm3] 3L_24515775_SNP [dm6]	T	G	1.581e^-5	0.376	INTERGENIC
2L	5712893	2L_5712893_SNP [dm3] 2L_5712893_SNP [dm6]	C	T	1.606e^-5	0.376	SYNONYMOUS_CODING CG7236	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8129477	2R_8129477_INS [dm3] 2R_12241972_INS [dm6]	C	ATT	1.609e^-5	0.376	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8129479	2R_8129479_SNP [dm3] 2R_12241974_SNP [dm6]	G	A	1.609e^-5	0.376	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3R	25362146	3R_25362146_SNP [dm3] 3R_29536424_SNP [dm6]	G	T	1.612e^-5	0.376	INTERGENIC
3R	25362154	3R_25362154_SNP [dm3] 3R_29536432_SNP [dm6]	G	T	1.612e^-5	0.376	INTERGENIC
2R	8153707	2R_8153707_SNP [dm3] 2R_12266202_SNP [dm6]	C	T	1.683e^-5	0.376	INTRON Cam
2R	8119487	2R_8119487_SNP [dm3] 2R_12231982_SNP [dm6]	C	A	1.785e^-5	0.376	INTERGENIC
2R	5940909	2R_5940909_SNP [dm3] 2R_10053404_SNP [dm6]	T	A	1.900e^-5	0.376	UPSTREAM CR44297 & 1 other DOWNSTREAM Def INTRON magu
3R	11001749	3R_11001749_SNP [dm3] 3R_15176027_SNP [dm6]	T	C	1.920e^-5	0.376	UTR_3_PRIME Mf INTRON Mf & 1 other
X	5925033	X_5925033_SNP [dm3] X_6031000_SNP [dm6]	G	T	1.926e^-5	0.376	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	7333329	2L_7333329_SNP [dm3] 2L_7333329_SNP [dm6]	A	T	1.934e^-5	0.376	UPSTREAM Wnt6 INTERGENIC
2L	3741998	2L_3741998_SNP [dm3] 2L_3741998_SNP [dm6]	T	A	1.939e^-5	0.376	INTRON CG10019
3L	15600403	3L_15600403_SNP [dm3] 3L_15607303_SNP [dm6]	G	A	1.974e^-5	0.376	UTR_3_PRIME RhoGAP71E
3R	11092499	3R_11092499_SNP [dm3] 3R_15266777_SNP [dm6]	C	A	1.991e^-5	0.376	NON_SYNONYMOUS_CODING CG14864 DOWNSTREAM Oscp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19512239	3R_19512239_SNP [dm3] 3R_23686517_SNP [dm6]	A	G	2.051e^-5	0.376	UTR_3_PRIME CG18754 DOWNSTREAM CG18754 INTRON SPE
3R	11091306	3R_11091306_SNP [dm3] 3R_15265584_SNP [dm6]	C	T	2.064e^-5	0.376	UPSTREAM Oscp DOWNSTREAM Set INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	11096651	3R_11096651_SNP [dm3] 3R_15270929_SNP [dm6]	C	T	2.064e^-5	0.376	UTR_3_PRIME Cp190 DOWNSTREAM Zip88E
3R	11100372	3R_11100372_SNP [dm3] 3R_15274650_SNP [dm6]	T	G	2.064e^-5	0.376	UTR_5_PRIME Cp190 UPSTREAM CG4338 INTRON Cp190	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	14468657	3L_14468657_SNP [dm3] 3L_14475557_SNP [dm6]	T	C	2.089e^-5	0.376	INTRON bbg
3L	14468667	3L_14468667_SNP [dm3] 3L_14475567_SNP [dm6]	G	A	2.089e^-5	0.376	INTRON bbg
3L	14468811	3L_14468811_SNP [dm3] 3L_14475711_SNP [dm6]	A	T	2.089e^-5	0.376	INTRON bbg
2R	15411842	2R_15411842_SNP [dm3] 2R_19524337_SNP [dm6]	A	C	2.092e^-5	0.376	UTR_3_PRIME sm
2R	16931578	2R_16931578_SNP [dm3] 2R_21044073_SNP [dm6]	G	A	2.094e^-5	0.376	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19602275	3L_19602275_SNP [dm3] 3L_19609175_SNP [dm6]	A	G	2.173e^-5	0.376	SYNONYMOUS_CODING Lon DOWNSTREAM CG9372	TF binding site mE1_TFBS_cad
2R	19942301	2R_19942301_DEL [dm3] 2R_24054778_DEL [dm6]	CC	C	2.181e^-5	0.376	UPSTREAM CG13563 INTRON ppk29
3L	6498047	3L_6498047_SNP [dm3] 3L_6504947_SNP [dm6]	T	G	2.188e^-5	0.376	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	6498274	3L_6498274_SNP [dm3] 3L_6505174_SNP [dm6]	T	C	2.188e^-5	0.376	INTRON sfl
2R	17358764	2R_17358764_SNP [dm3] 2R_21471259_SNP [dm6]	A	T	2.194e^-5	0.376	INTRON Sdc
3R	20495660	3R_20495660_SNP [dm3] 3R_24669938_SNP [dm6]	A	T	2.213e^-5	0.376	INTRON slo
3R	17185841	3R_17185841_SNP [dm3] 3R_21360119_SNP [dm6]	A	G	2.245e^-5	0.376	UPSTREAM pre-mod_mdg4_-Z & 7 others INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17190619	3R_17190619_SNP [dm3] 3R_21364897_SNP [dm6]	C	A	2.245e^-5	0.376	NON_SYNONYMOUS_CODING mod_mdg4_ & 1 other UTR_5_PRIME pre-mod_mdg4_-AB & 1 other UPSTREAM pre-mod_mdg4_-X & 6 others INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	17190644	3R_17190644_SNP [dm3] 3R_21364922_SNP [dm6]	C	G	2.245e^-5	0.376	SYNONYMOUS_CODING mod_mdg4_ & 1 other UTR_5_PRIME pre-mod_mdg4_-AB & 1 other UPSTREAM pre-mod_mdg4_-X & 6 others INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	25362258	3R_25362258_SNP [dm3] 3R_29536536_SNP [dm6]	T	A	2.245e^-5	0.376	INTERGENIC
X	21264184	X_21264184_SNP [dm3] X_21393157_SNP [dm6]	A	T	2.245e^-5	0.376	INTERGENIC
X	17674802	X_17674802_SNP [dm3] X_17780769_SNP [dm6]	C	A	2.255e^-5	0.376	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17357151	2R_17357151_SNP [dm3] 2R_21469646_SNP [dm6]	A	C	2.341e^-5	0.376	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25812483	3R_25812483_SNP [dm3] 3R_29986761_SNP [dm6]	A	G	2.433e^-5	0.376	INTRON CG7896	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	13495290	3R_13495290_SNP [dm3] 3R_17669568_SNP [dm6]	G	A	2.444e^-5	0.376	SYNONYMOUS_CODING CG7523 UTR_3_PRIME CG14322 DOWNSTREAM CG14322
3R	25963401	3R_25963401_SNP [dm3] 3R_30137679_SNP [dm6]	T	A	2.479e^-5	0.376	INTRON AdoR	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16294542	3R_16294542_SNP [dm3] 3R_20468820_SNP [dm6]	G	A	2.588e^-5	0.376	INTRON Gfrl
3R	16294728	3R_16294728_SNP [dm3] 3R_20469006_SNP [dm6]	C	T	2.588e^-5	0.376	INTRON Gfrl
3R	10157706	3R_10157706_SNP [dm3] 3R_14331984_SNP [dm6]	G	A	2.682e^-5	0.376	INTRON NK7.1
X	12775305	X_12775305_SNP [dm3] X_12881272_SNP [dm6]	G	A	2.723e^-5	0.376	INTRON Pde9
3R	8126583	3R_8126583_SNP [dm3] 3R_12300861_SNP [dm6]	C	T	2.805e^-5	0.376	INTRON svp	TF binding site mE1_TFBS_cad
3L	9062242	3L_9062242_SNP [dm3] 3L_9069142_SNP [dm6]	G	T	2.810e^-5	0.376	UTR_3_PRIME CG4911 DOWNSTREAM CG4911	TF binding site mE1_TFBS_sens
3R	12133965	3R_12133965_SNP [dm3] 3R_16308243_SNP [dm6]	C	T	2.821e^-5	0.376	INTRON Zip89B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12765329	3R_12765329_SNP [dm3] 3R_16939607_SNP [dm6]	G	A	2.863e^-5	0.376	INTRON Abd-B	TF binding site mE1_TFBS_cad
3R	20533859	3R_20533859_SNP [dm3] 3R_24708137_SNP [dm6]	T	G	2.867e^-5	0.376	UTR_3_PRIME slo DOWNSTREAM slo
X	1952525	X_1952525_SNP [dm3] X_2058492_SNP [dm6]	G	A	2.868e^-5	0.376	SYNONYMOUS_CODING Sik2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5663533	3R_5663533_SNP [dm3] 3R_9837811_SNP [dm6]	G	A	2.918e^-5	0.376	INTRON Teh1
3L	10006031	3L_10006031_SNP [dm3] 3L_10012931_SNP [dm6]	A	G	2.923e^-5	0.376	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13116951	3R_13116951_SNP [dm3] 3R_17291229_SNP [dm6]	C	T	2.966e^-5	0.376	INTERGENIC
X	12775269	X_12775269_DEL [dm3] X_12881236_DEL [dm6]	AT	A	3.004e^-5	0.376	INTRON Pde9
2R	19274087	2R_19274087_INS [dm3] 2R_23386564_INS [dm6]	T	TT	3.035e^-5	0.376	UTR_5_PRIME eIF2B-delta UPSTREAM eIF2B-delta & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	4578870	2R_4578870_SNP [dm3] 2R_8691365_SNP [dm6]	A	G	3.038e^-5	0.376	UPSTREAM Jon44E INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11000726	3R_11000726_SNP [dm3] 3R_15175004_SNP [dm6]	T	A	3.044e^-5	0.376	DOWNSTREAM Mf INTRON Mf & 1 other
3R	11001661	3R_11001661_SNP [dm3] 3R_15175939_SNP [dm6]	G	T	3.044e^-5	0.376	UTR_3_PRIME Mf DOWNSTREAM Mf INTRON Mf & 1 other
3R	11002614	3R_11002614_SNP [dm3] 3R_15176892_SNP [dm6]	G	A	3.044e^-5	0.376	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
3R	11002639	3R_11002639_SNP [dm3] 3R_15176917_SNP [dm6]	T	A	3.044e^-5	0.376	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
3R	11004949	3R_11004949_SNP [dm3] 3R_15179227_SNP [dm6]	G	A	3.044e^-5	0.376	INTRON Gyc88E & 1 other
3R	11005430	3R_11005430_SNP [dm3] 3R_15179708_SNP [dm6]	T	G	3.044e^-5	0.376	UPSTREAM Mf INTRON Gyc88E & 1 other
3R	8097854	3R_8097854_SNP [dm3] 3R_12272132_SNP [dm6]	G	C	3.128e^-5	0.376	UPSTREAM Sfp87B DOWNSTREAM CG17738 INTRON svp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	8132744	2R_8132744_SNP [dm3] 2R_12245239_SNP [dm6]	T	G	3.154e^-5	0.376	UPSTREAM CG43244 INTERGENIC
2R	17487578	2R_17487578_SNP [dm3] 2R_21600073_SNP [dm6]	G	A	3.197e^-5	0.376	INTERGENIC
3R	17183946	3R_17183946_SNP [dm3] 3R_21358224_SNP [dm6]	C	T	3.211e^-5	0.376	UTR_5_PRIME pre-mod_mdg4_-J & 3 others UTR_3_PRIME pre-mod_mdg4_-K DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_ & 1 other
3R	17183948	3R_17183948_SNP [dm3] 3R_21358226_SNP [dm6]	T	G	3.211e^-5	0.376	UTR_5_PRIME pre-mod_mdg4_-J & 3 others UTR_3_PRIME pre-mod_mdg4_-K DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_ & 1 other
3L	4707956	3L_4707956_SNP [dm3] 3L_4707956_SNP [dm6]	G	A	3.233e^-5	0.376	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18973454	3L_18973454_SNP [dm3] 3L_18980354_SNP [dm6]	T	C	3.253e^-5	0.376	DOWNSTREAM CR45689 INTERGENIC
2R	11965360	2R_11965360_INS [dm3] 2R_16077855_INS [dm6]	A	ACAACA	3.265e^-5	0.376	DOWNSTREAM CR43415 INTERGENIC
2L	5743085	2L_5743085_SNP [dm3] 2L_5743085_SNP [dm6]	T	G	3.287e^-5	0.376	INTRON CG11030
2R	17259791	2R_17259791_SNP [dm3] 2R_21372286_SNP [dm6]	G	A	3.313e^-5	0.376	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11708375	3R_11708375_SNP [dm3] 3R_15882653_SNP [dm6]	A	G	3.363e^-5	0.376	INTERGENIC
3R	10999114	3R_10999114_SNP [dm3] 3R_15173392_SNP [dm6]	G	T	3.398e^-5	0.376	DOWNSTREAM Mf INTRON Mf & 1 other	TF binding site mE1_TFBS_sbb
3L	11297913	3L_11297913_SNP [dm3] 3L_11304813_SNP [dm6]	A	T	3.434e^-5	0.376	INTERGENIC
3R	2798253	3R_2798253_SNP [dm3] 3R_6972531_SNP [dm6]	G	T	3.436e^-5	0.376	INTRON Antp	TF binding site mE1_TFBS_cad
3R	19426968	3R_19426968_MNP [dm3] 3R_23601246_MNP [dm6]	AGA	CTG	3.576e^-5	0.376	DOWNSTREAM tRNA:CR31143 INTERGENIC
3R	12756576	3R_12756576_SNP [dm3] 3R_16930854_SNP [dm6]	C	T	3.589e^-5	0.376	INTRON Abd-B
3L	8025956	3L_8025956_SNP [dm3] 3L_8032856_SNP [dm6]	C	G	3.659e^-5	0.376	INTRON nmo
2R	18096486	2R_18096486_SNP [dm3] 2R_22208981_SNP [dm6]	A	C	3.725e^-5	0.376	UTR_3_PRIME CG3264 UPSTREAM CG3290
2R	8141391	2R_8141391_SNP [dm3] 2R_12253886_SNP [dm6]	G	C	3.738e^-5	0.376	UPSTREAM CG13168 INTERGENIC
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	3.763e^-5	0.376	INTERGENIC
3L	17580827	3L_17580827_SNP [dm3] 3L_17587727_SNP [dm6]	A	G	3.770e^-5	0.376	INTRON Eip74EF
X	15426906	X_15426906_SNP [dm3] X_15532873_SNP [dm6]	G	A	3.833e^-5	0.376	INTRON Ac13E
2L	5537843	2L_5537843_SNP [dm3] 2L_5537843_SNP [dm6]	A	G	3.910e^-5	0.376	SYNONYMOUS_CODING CG14015	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	8129595	2R_8129595_SNP [dm3] 2R_12242090_SNP [dm6]	T	G	3.955e^-5	0.376	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2L	18595778	2L_18595778_SNP [dm3] 2L_18595778_SNP [dm6]	C	T	3.959e^-5	0.376	DOWNSTREAM amos & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	14177968	3L_14177968_SNP [dm3] 3L_14184868_SNP [dm6]	T	C	3.980e^-5	0.376	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16442154	X_16442154_SNP [dm3] X_16548121_SNP [dm6]	A	C	4.001e^-5	0.376	UPSTREAM CG9902 DOWNSTREAM Arp2 INTERGENIC	transposable element FlyBase
X	16464345	X_16464345_SNP [dm3] X_16570312_SNP [dm6]	A	C	4.120e^-5	0.376	UPSTREAM CanA-14F INTRON CanA-14F
3R	11003830	3R_11003830_SNP [dm3] 3R_15178108_SNP [dm6]	A	T	4.189e^-5	0.376	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
3R	26218192	3R_26218192_SNP [dm3] 3R_30392470_SNP [dm6]	T	A	4.229e^-5	0.376	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26218194	3R_26218194_SNP [dm3] 3R_30392472_SNP [dm6]	A	G	4.229e^-5	0.376	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	525197	2L_525197_SNP [dm3] 2L_525197_SNP [dm6]	C	T	4.332e^-5	0.376	INTRON ush	TF binding site mE1_TFBS_inv mE1_TFBS_Kr
2L	5733619	2L_5733619_INS [dm3] 2L_5733619_INS [dm6]	T	TT	4.332e^-5	0.376	DOWNSTREAM CG11147 INTRON CG11030
2L	5733666	2L_5733666_SNP [dm3] 2L_5733666_SNP [dm6]	C	T	4.332e^-5	0.376	DOWNSTREAM CG11147 INTRON CG11030
3L	9062094	3L_9062094_SNP [dm3] 3L_9068994_SNP [dm6]	C	G	4.332e^-5	0.376	UTR_3_PRIME CG4911 DOWNSTREAM CG4911	TF binding site mE1_TFBS_sens
3R	16089418	3R_16089418_SNP [dm3] 3R_20263696_SNP [dm6]	A	G	4.332e^-5	0.376	INTRON cic	TF binding site BDTNP1_TFBS_dl
3R	26141337	3R_26141337_DEL [dm3] 3R_30315615_DEL [dm6]	CC	C	4.332e^-5	0.376	INTRON hdc
3R	18167381	3R_18167381_SNP [dm3] 3R_22341659_SNP [dm6]	A	G	4.344e^-5	0.376	SYNONYMOUS_CODING CG5386
2R	12148250	2R_12148250_SNP [dm3] 2R_16260745_SNP [dm6]	G	C	4.357e^-5	0.376	UPSTREAM CngA INTERGENIC
2R	8125091	2R_8125091_INS [dm3] 2R_12237586_INS [dm6]	C	TTTTGATTGAGTTTG...	4.400e^-5	0.376	INTERGENIC
2R	8125560	2R_8125560_DEL [dm3] 2R_12238055_DEL [dm6]	AT	A	4.400e^-5	0.376	INTERGENIC
2R	8125618	2R_8125618_SNP [dm3] 2R_12238113_SNP [dm6]	C	T	4.400e^-5	0.376	INTERGENIC
2R	8126176	2R_8126176_SNP [dm3] 2R_12238671_SNP [dm6]	T	C	4.400e^-5	0.376	INTERGENIC
3L	14799492	3L_14799492_SNP [dm3] 3L_14806392_SNP [dm6]	T	G	4.427e^-5	0.376	INTRON CG17839
3R	13495245	3R_13495245_SNP [dm3] 3R_17669523_SNP [dm6]	T	A	4.450e^-5	0.376	SYNONYMOUS_CODING CG7523 UTR_3_PRIME CG14322 DOWNSTREAM CG14322
2R	19942672	2R_19942672_SNP [dm3] 2R_24055149_SNP [dm6]	C	T	4.474e^-5	0.376	UTR_5_PRIME ppk29 UPSTREAM CG13563
X	12776103	X_12776103_SNP [dm3] X_12882070_SNP [dm6]	A	G	4.475e^-5	0.376	INTRON Pde9
X	12776129	X_12776129_SNP [dm3] X_12882096_SNP [dm6]	T	C	4.475e^-5	0.376	INTRON Pde9
X	12776136	X_12776136_SNP [dm3] X_12882103_SNP [dm6]	G	T	4.475e^-5	0.376	INTRON Pde9
3R	2703512	3R_2703512_SNP [dm3] 3R_6877790_SNP [dm6]	G	C	4.573e^-5	0.376	EXON CR44931	regulatory region FlyBase REDfly_CRMs
3R	2737829	3R_2737829_SNP [dm3] 3R_6912107_SNP [dm6]	G	A	4.573e^-5	0.376	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_zfh1
3R	2739017	3R_2739017_SNP [dm3] 3R_6913295_SNP [dm6]	T	C	4.573e^-5	0.376	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	14455543	3L_14455543_SNP [dm3] 3L_14462443_SNP [dm6]	A	G	4.593e^-5	0.376	INTRON bbg
3L	14455546	3L_14455546_SNP [dm3] 3L_14462446_SNP [dm6]	G	A	4.593e^-5	0.376	INTRON bbg
3L	14455550	3L_14455550_SNP [dm3] 3L_14462450_SNP [dm6]	A	G	4.593e^-5	0.376	INTRON bbg
3R	11299061	3R_11299061_SNP [dm3] 3R_15473339_SNP [dm6]	G	C	4.593e^-5	0.376	INTRON AdamTS-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	10987051	3L_10987051_SNP [dm3] 3L_10993951_SNP [dm6]	A	C	4.594e^-5	0.376	INTRON klu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8125551	2R_8125551_SNP [dm3] 2R_12238046_SNP [dm6]	G	T	4.612e^-5	0.376	INTERGENIC
2R	11855345	2R_11855345_SNP [dm3] 2R_15967840_SNP [dm6]	G	A	4.663e^-5	0.376	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
3L	14177958	3L_14177958_SNP [dm3] 3L_14184858_SNP [dm6]	T	C	4.716e^-5	0.376	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	1869107	3R_1869107_SNP [dm3] 3R_6043385_SNP [dm6]	A	G	4.717e^-5	0.376	INTERGENIC
3R	6405008	3R_6405008_SNP [dm3] 3R_10579286_SNP [dm6]	G	T	4.731e^-5	0.376	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	2671430	3L_2671430_SNP [dm3] 3L_2671430_SNP [dm6]	G	T	4.780e^-5	0.376	UTR_3_PRIME Fife INTRON Fife
2L	3159466	2L_3159466_SNP [dm3] 2L_3159466_SNP [dm6]	C	T	4.815e^-5	0.376	UPSTREAM gkt INTRON Mad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	4757770	3L_4757770_SNP [dm3] 3L_4757770_SNP [dm6]	G	T	4.815e^-5	0.376	UPSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	8129648	2R_8129648_SNP [dm3] 2R_12242143_SNP [dm6]	T	A	4.888e^-5	0.376	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8150194	2R_8150194_SNP [dm3] 2R_12262689_SNP [dm6]	T	G	4.914e^-5	0.376	INTRON Cam	TF binding site BDTNP1_TFBS_dl
X	8156777	X_8156777_SNP [dm3] X_8262744_SNP [dm6]	C	A	4.915e^-5	0.376	INTRON CG1632
3R	11001096	3R_11001096_SNP [dm3] 3R_15175374_SNP [dm6]	C	T	4.965e^-5	0.376	UTR_3_PRIME Mf DOWNSTREAM Mf INTRON Mf & 1 other
2R	8129554	2R_8129554_INS [dm3] 2R_12242049_INS [dm6]	T	TAC	4.975e^-5	0.376	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8129576	2R_8129576_SNP [dm3] 2R_12242071_SNP [dm6]	T	A	4.975e^-5	0.376	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
X	15380348	X_15380348_SNP [dm3] X_15486315_SNP [dm6]	C	G	4.979e^-5	0.376	SYNONYMOUS_CODING CG6340 UTR_3_PRIME CG6340 UPSTREAM Gmap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13923055	2L_13923055_SNP [dm3] 2L_13923055_SNP [dm6]	T	C	5.004e^-5	0.376	INTRON Ance-3 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8110464	2R_8110464_SNP [dm3] 2R_12222959_SNP [dm6]	G	C	5.082e^-5	0.376	INTERGENIC
3L	20539004	3L_20539004_MNP [dm3] 3L_20545904_MNP [dm6]	TCGT	AAAA	5.111e^-5	0.376	INTERGENIC
3L	20539010	3L_20539010_SNP [dm3] 3L_20545910_SNP [dm6]	A	C	5.111e^-5	0.376	INTERGENIC
3L	20539012	3L_20539012_DEL [dm3] 3L_20545912_DEL [dm6]	TTTT	T	5.111e^-5	0.376	INTERGENIC
2R	13592718	2R_13592718_DEL [dm3] 2R_17705213_DEL [dm6]	CC	T	5.124e^-5	0.376	INTRON CG6424
3R	13494989	3R_13494989_SNP [dm3] 3R_17669267_SNP [dm6]	C	A	5.166e^-5	0.376	UTR_3_PRIME CG14322 & 1 other DOWNSTREAM CG14322	TF binding site mE1_TFBS_inv
3R	1864150	3R_1864150_SNP [dm3] 3R_6038428_SNP [dm6]	C	A	5.170e^-5	0.376	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25522349	3R_25522349_SNP [dm3] 3R_29696627_SNP [dm6]	T	C	5.220e^-5	0.376	UTR_3_PRIME dmrt99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24563046	3R_24563046_SNP [dm3] 3R_28737324_SNP [dm6]	G	T	5.240e^-5	0.376	UTR_3_PRIME AstA-R2 DOWNSTREAM AstA-R2
3R	12750206	3R_12750206_SNP [dm3] 3R_16924484_SNP [dm6]	T	A	5.257e^-5	0.376	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2714415	3L_2714415_SNP [dm3] 3L_2714415_SNP [dm6]	C	T	5.362e^-5	0.376	INTERGENIC
3R	23312617	3R_23312617_SNP [dm3] 3R_27486895_SNP [dm6]	T	G	5.495e^-5	0.376	INTERGENIC
3R	23312623	3R_23312623_DEL [dm3] 3R_27486901_DEL [dm6]	TG	T	5.495e^-5	0.376	INTERGENIC
3R	23312626	3R_23312626_DEL [dm3] 3R_27486904_DEL [dm6]	AAATCGTTTTG...	A	5.495e^-5	0.376	INTERGENIC
3R	23312641	3R_23312641_SNP [dm3] 3R_27486919_SNP [dm6]	T	C	5.495e^-5	0.376	INTERGENIC
3R	23312643	3R_23312643_DEL [dm3] 3R_27486921_DEL [dm6]	TTTGGTAAG	T	5.495e^-5	0.376	UPSTREAM Gr98a INTERGENIC
3R	23312662	3R_23312662_DEL [dm3] 3R_27486940_DEL [dm6]	TC	T	5.495e^-5	0.376	UPSTREAM Gr98a INTERGENIC
X	14752564	X_14752564_SNP [dm3] X_14858531_SNP [dm6]	G	A	5.566e^-5	0.376	INTRON Flo2
X	14752565	X_14752565_SNP [dm3] X_14858532_SNP [dm6]	A	C	5.566e^-5	0.376	INTRON Flo2
X	12776368	X_12776368_SNP [dm3] X_12882335_SNP [dm6]	A	G	5.574e^-5	0.376	INTRON Pde9
2R	5427739	2R_5427739_DEL [dm3] 2R_9540234_DEL [dm6]	ATACA	A	5.592e^-5	0.376	UTR_3_PRIME brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8122220	2R_8122220_SNP [dm3] 2R_12234715_SNP [dm6]	C	T	5.638e^-5	0.376	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	8132682	2R_8132682_SNP [dm3] 2R_12245177_SNP [dm6]	C	T	5.638e^-5	0.376	UPSTREAM CG43244 INTERGENIC
2R	8132763	2R_8132763_SNP [dm3] 2R_12245258_SNP [dm6]	G	C	5.638e^-5	0.376	UPSTREAM CG43244 INTERGENIC
2R	8153749	2R_8153749_SNP [dm3] 2R_12266244_SNP [dm6]	C	T	5.638e^-5	0.376	INTRON Cam
3R	2016914	3R_2016914_SNP [dm3] 3R_6191192_SNP [dm6]	G	C	5.644e^-5	0.376	INTRON NPFR
3R	2623099	3R_2623099_SNP [dm3] 3R_6797377_SNP [dm6]	A	T	5.694e^-5	0.376	INTRON Dfd	regulatory region FlyBase REDfly_CRMs
3L	18548447	3L_18548447_SNP [dm3] 3L_18555347_SNP [dm6]	A	T	5.713e^-5	0.376	INTERGENIC
3L	18548450	3L_18548450_SNP [dm3] 3L_18555350_SNP [dm6]	A	G	5.713e^-5	0.376	INTERGENIC
3L	17464159	3L_17464159_SNP [dm3] 3L_17471059_SNP [dm6]	G	A	5.737e^-5	0.376	INTRON CG7589
3R	12112589	3R_12112589_SNP [dm3] 3R_16286867_SNP [dm6]	C	A	5.737e^-5	0.376	INTRON gish
3L	17099369	3L_17099369_SNP [dm3] 3L_17106269_SNP [dm6]	C	A	5.743e^-5	0.376	INTRON Rbp6
X	14753342	X_14753342_SNP [dm3] X_14859309_SNP [dm6]	G	A	5.856e^-5	0.376	INTRON Flo2
2R	9141927	2R_9141927_SNP [dm3] 2R_13254422_SNP [dm6]	G	T	5.945e^-5	0.376	UPSTREAM CG4714 DOWNSTREAM CR44343 INTERGENIC	TF binding site mE1_TFBS_cad
X	17674501	X_17674501_DEL [dm3] X_17780468_DEL [dm6]	CA	C	5.965e^-5	0.376	INTERGENIC	TF binding site mE1_TFBS_HSA
X	17674506	X_17674506_SNP [dm3] X_17780473_SNP [dm6]	G	A	5.965e^-5	0.376	INTERGENIC	TF binding site mE1_TFBS_HSA
X	2978063	X_2978063_SNP [dm3] X_3084030_SNP [dm6]	C	T	5.976e^-5	0.376	INTRON kirre
3R	6651838	3R_6651838_DEL [dm3] 3R_10826116_DEL [dm6]	GCAAATCCAA	G	6.002e^-5	0.376	UPSTREAM Cad86C INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16813348	X_16813348_SNP [dm3] X_16919315_SNP [dm6]	C	T	6.002e^-5	0.376	INTRON CG4928
3L	9252511	3L_9252511_SNP [dm3] 3L_9259411_SNP [dm6]	C	A	6.113e^-5	0.376	INTRON GluRIB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17652537	2R_17652537_SNP [dm3] 2R_21765032_SNP [dm6]	A	C	6.115e^-5	0.376	UPSTREAM CG30395 DOWNSTREAM CG43982 EXON CR43984	TF binding site BDTNP1_TFBS_dl
3L	16033062	3L_16033062_SNP [dm3] 3L_16039962_SNP [dm6]	C	T	6.140e^-5	0.376	SYNONYMOUS_CODING th	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3R	19426990	3R_19426990_SNP [dm3] 3R_23601268_SNP [dm6]	C	T	6.146e^-5	0.376	DOWNSTREAM tRNA:CR31143 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19427106	3R_19427106_SNP [dm3] 3R_23601384_SNP [dm6]	T	C	6.146e^-5	0.376	INTRON tRNA:CR31143	TF binding site BDTNP1_TFBS_dl
3R	2737821	3R_2737821_SNP [dm3] 3R_6912099_SNP [dm6]	A	G	6.214e^-5	0.376	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_zfh1
3R	2738552	3R_2738552_SNP [dm3] 3R_6912830_SNP [dm6]	G	A	6.214e^-5	0.376	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
2L	19199598	2L_19199598_SNP [dm3] 2L_19199598_SNP [dm6]	C	T	6.268e^-5	0.376	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20517793	3R_20517793_SNP [dm3] 3R_24692071_SNP [dm6]	T	A	6.274e^-5	0.376	INTRON slo
3R	11463120	3R_11463120_SNP [dm3] 3R_15637398_SNP [dm6]	T	A	6.309e^-5	0.376	DOWNSTREAM CG43335 INTRON CG43336
2L	17438275	2L_17438275_SNP [dm3] 2L_17438275_SNP [dm6]	A	G	6.332e^-5	0.376	DOWNSTREAM dl INTRON dl	TF binding site BDTNP1_TFBS_dl
2L	17438277	2L_17438277_SNP [dm3] 2L_17438277_SNP [dm6]	A	C	6.332e^-5	0.376	DOWNSTREAM dl INTRON dl	TF binding site BDTNP1_TFBS_dl
2L	17438354	2L_17438354_SNP [dm3] 2L_17438354_SNP [dm6]	A	T	6.332e^-5	0.376	DOWNSTREAM dl INTRON dl
2L	17450014	2L_17450014_SNP [dm3] 2L_17450014_SNP [dm6]	C	T	6.332e^-5	0.376	UTR_5_PRIME dl INTRON dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	17450594	2L_17450594_SNP [dm3] 2L_17450594_SNP [dm6]	C	T	6.332e^-5	0.376	UPSTREAM dl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	17451687	2L_17451687_SNP [dm3] 2L_17451687_SNP [dm6]	T	G	6.332e^-5	0.376	INTERGENIC
2L	17451842	2L_17451842_SNP [dm3] 2L_17451842_SNP [dm6]	G	A	6.332e^-5	0.376	INTERGENIC
2R	6999376	2R_6999376_SNP [dm3] 2R_11111871_SNP [dm6]	A	G	6.396e^-5	0.376	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	8129557	2R_8129557_SNP [dm3] 2R_12242052_SNP [dm6]	T	A	6.400e^-5	0.376	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3R	11622361	3R_11622361_SNP [dm3] 3R_15796639_SNP [dm6]	C	T	6.403e^-5	0.376	NON_SYNONYMOUS_CODING nsl1	TF binding site mE1_TFBS_chinmo
3R	8517769	3R_8517769_SNP [dm3] 3R_12692047_SNP [dm6]	G	A	6.438e^-5	0.376	UTR_3_PRIME CG31347 UPSTREAM Su_fu_ INTRON Arp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18697026	3R_18697026_SNP [dm3] 3R_22871304_SNP [dm6]	G	A	6.451e^-5	0.376	INTERGENIC
2R	18911986	2R_18911986_SNP [dm3] 2R_23024463_SNP [dm6]	G	C	6.470e^-5	0.376	INTRON twi & 1 other
2L	18612729	2L_18612729_SNP [dm3] 2L_18612729_SNP [dm6]	A	G	6.515e^-5	0.376	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3R	23312659	3R_23312659_SNP [dm3] 3R_27486937_SNP [dm6]	G	T	6.608e^-5	0.376	UPSTREAM Gr98a INTERGENIC
2L	16793873	2L_16793873_SNP [dm3] 2L_16793873_SNP [dm6]	A	G	6.629e^-5	0.376	UPSTREAM Ugt36Ba DOWNSTREAM CG17928 INTERGENIC
3R	13133522	3R_13133522_SNP [dm3] 3R_17307800_SNP [dm6]	A	T	6.645e^-5	0.376	INTERGENIC
3R	13133530	3R_13133530_SNP [dm3] 3R_17307808_SNP [dm6]	A	T	6.645e^-5	0.376	INTERGENIC
3R	13614944	3R_13614944_SNP [dm3] 3R_17789222_SNP [dm6]	C	A	6.664e^-5	0.376	INTRON CG43102
2R	10317638	2R_10317638_SNP [dm3] 2R_14430133_SNP [dm6]	C	A	6.742e^-5	0.376	INTRON phyl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8119474	2R_8119474_SNP [dm3] 2R_12231969_SNP [dm6]	G	C	6.815e^-5	0.376	INTERGENIC
2R	8120064	2R_8120064_SNP [dm3] 2R_12232559_SNP [dm6]	T	C	6.815e^-5	0.376	INTERGENIC
2R	8120262	2R_8120262_SNP [dm3] 2R_12232757_SNP [dm6]	T	G	6.815e^-5	0.376	INTERGENIC
2R	8121174	2R_8121174_SNP [dm3] 2R_12233669_SNP [dm6]	G	C	6.815e^-5	0.376	DOWNSTREAM CR44313 INTERGENIC
2R	8121559	2R_8121559_SNP [dm3] 2R_12234054_SNP [dm6]	A	G	6.815e^-5	0.376	EXON CR44313
2R	8121576	2R_8121576_SNP [dm3] 2R_12234071_SNP [dm6]	A	G	6.815e^-5	0.376	EXON CR44313
2R	8121704	2R_8121704_SNP [dm3] 2R_12234199_SNP [dm6]	C	A	6.815e^-5	0.376	EXON CR44313
2R	8122215	2R_8122215_SNP [dm3] 2R_12234710_SNP [dm6]	C	T	6.815e^-5	0.376	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	8122437	2R_8122437_SNP [dm3] 2R_12234932_SNP [dm6]	A	T	6.815e^-5	0.376	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	8122440	2R_8122440_SNP [dm3] 2R_12234935_SNP [dm6]	A	T	6.815e^-5	0.376	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	8122442	2R_8122442_SNP [dm3] 2R_12234937_SNP [dm6]	A	G	6.815e^-5	0.376	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	8122444	2R_8122444_MNP [dm3] 2R_12234939_MNP [dm6]	TAAAGG	ATCCCC	6.815e^-5	0.376	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	8122451	2R_8122451_INS [dm3] 2R_12234946_INS [dm6]	A	AAA	6.815e^-5	0.376	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	8122459	2R_8122459_SNP [dm3] 2R_12234954_SNP [dm6]	G	A	6.815e^-5	0.376	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	8122478	2R_8122478_SNP [dm3] 2R_12234973_SNP [dm6]	A	T	6.815e^-5	0.376	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_kn
2R	8123318	2R_8123318_SNP [dm3] 2R_12235813_SNP [dm6]	T	A	6.815e^-5	0.376	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	8123840	2R_8123840_SNP [dm3] 2R_12236335_SNP [dm6]	C	A	6.815e^-5	0.376	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	8124541	2R_8124541_SNP [dm3] 2R_12237036_SNP [dm6]	C	G	6.815e^-5	0.376	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8124549	2R_8124549_SNP [dm3] 2R_12237044_SNP [dm6]	C	T	6.815e^-5	0.376	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8127865	2R_8127865_SNP [dm3] 2R_12240360_SNP [dm6]	C	G	6.815e^-5	0.376	UPSTREAM CG13170 & 1 other INTERGENIC
2R	8128815	2R_8128815_SNP [dm3] 2R_12241310_SNP [dm6]	C	T	6.815e^-5	0.376	SYNONYMOUS_CODING CG43315 DOWNSTREAM CG13170
2R	8128830	2R_8128830_SNP [dm3] 2R_12241325_SNP [dm6]	G	T	6.815e^-5	0.376	NON_SYNONYMOUS_CODING CG43315 DOWNSTREAM CG13170
2R	8129037	2R_8129037_SNP [dm3] 2R_12241532_SNP [dm6]	T	A	6.815e^-5	0.376	SPLICE_SITE_REGION CG43315 DOWNSTREAM CG13170 INTRON CG43315
2R	8129167	2R_8129167_SNP [dm3] 2R_12241662_SNP [dm6]	C	A	6.815e^-5	0.376	NON_SYNONYMOUS_CODING CG43315 UPSTREAM CG43316 DOWNSTREAM CG13170
2R	8129484	2R_8129484_INS [dm3] 2R_12241979_INS [dm6]	C	AATTTTTTATAAG...	6.815e^-5	0.376	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8129488	2R_8129488_INS [dm3] 2R_12241983_INS [dm6]	A	TC	6.815e^-5	0.376	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8129493	2R_8129493_SNP [dm3] 2R_12241988_SNP [dm6]	A	T	6.815e^-5	0.376	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8129640	2R_8129640_SNP [dm3] 2R_12242135_SNP [dm6]	G	C	6.815e^-5	0.376	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8129707	2R_8129707_DEL [dm3] 2R_12242202_DEL [dm6]	CT	C	6.815e^-5	0.376	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8130038	2R_8130038_SNP [dm3] 2R_12242533_SNP [dm6]	A	G	6.815e^-5	0.376	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8130727	2R_8130727_SNP [dm3] 2R_12243222_SNP [dm6]	A	G	6.815e^-5	0.376	NON_SYNONYMOUS_CODING CG43316 DOWNSTREAM CG43244
2R	8131852	2R_8131852_SNP [dm3] 2R_12244347_SNP [dm6]	G	A	6.815e^-5	0.376	INTRON CG43244
2R	8131853	2R_8131853_SNP [dm3] 2R_12244348_SNP [dm6]	C	T	6.815e^-5	0.376	INTRON CG43244
2R	8131865	2R_8131865_SNP [dm3] 2R_12244360_SNP [dm6]	C	T	6.815e^-5	0.376	INTRON CG43244
2R	8131877	2R_8131877_SNP [dm3] 2R_12244372_SNP [dm6]	C	T	6.815e^-5	0.376	INTRON CG43244
2R	8132388	2R_8132388_SNP [dm3] 2R_12244883_SNP [dm6]	G	T	6.815e^-5	0.376	UPSTREAM CG43244 INTERGENIC
2R	8132391	2R_8132391_SNP [dm3] 2R_12244886_SNP [dm6]	A	G	6.815e^-5	0.376	UPSTREAM CG43244 INTERGENIC
2R	8132403	2R_8132403_SNP [dm3] 2R_12244898_SNP [dm6]	G	C	6.815e^-5	0.376	UPSTREAM CG43244 INTERGENIC
2R	8132604	2R_8132604_SNP [dm3] 2R_12245099_SNP [dm6]	C	A	6.815e^-5	0.376	UPSTREAM CG43244 INTERGENIC
2R	8132623	2R_8132623_DEL [dm3] 2R_12245118_DEL [dm6]	CGATAAGCATAA...	T	6.815e^-5	0.376	UPSTREAM CG43244 INTERGENIC
2R	8132843	2R_8132843_SNP [dm3] 2R_12245338_SNP [dm6]	T	A	6.815e^-5	0.376	UPSTREAM CG43244 INTERGENIC
2R	8133337	2R_8133337_SNP [dm3] 2R_12245832_SNP [dm6]	C	G	6.815e^-5	0.376	DOWNSTREAM CR44315 INTERGENIC
2R	8133382	2R_8133382_SNP [dm3] 2R_12245877_SNP [dm6]	T	A	6.815e^-5	0.376	DOWNSTREAM CR44315 INTERGENIC
2R	8133461	2R_8133461_SNP [dm3] 2R_12245956_SNP [dm6]	C	T	6.815e^-5	0.376	DOWNSTREAM CR44315 INTERGENIC
2R	8133841	2R_8133841_SNP [dm3] 2R_12246336_SNP [dm6]	C	T	6.815e^-5	0.376	DOWNSTREAM CR44315 INTERGENIC
2R	8137155	2R_8137155_SNP [dm3] 2R_12249650_SNP [dm6]	A	G	6.815e^-5	0.376	INTERGENIC
2R	8137167	2R_8137167_INS [dm3] 2R_12249662_INS [dm6]	C	CCT	6.815e^-5	0.376	INTERGENIC
2R	8137175	2R_8137175_INS [dm3] 2R_12249670_INS [dm6]	C	TCTT	6.815e^-5	0.376	INTERGENIC
2R	8137554	2R_8137554_SNP [dm3] 2R_12250049_SNP [dm6]	G	A	6.815e^-5	0.376	INTERGENIC
2R	8137666	2R_8137666_DEL [dm3] 2R_12250161_DEL [dm6]	TC	T	6.815e^-5	0.376	INTERGENIC
2R	8137669	2R_8137669_SNP [dm3] 2R_12250164_SNP [dm6]	A	G	6.815e^-5	0.376	INTERGENIC
2R	8137678	2R_8137678_SNP [dm3] 2R_12250173_SNP [dm6]	T	C	6.815e^-5	0.376	INTERGENIC
2R	8137696	2R_8137696_SNP [dm3] 2R_12250191_SNP [dm6]	A	T	6.815e^-5	0.376	INTERGENIC
2R	8137699	2R_8137699_SNP [dm3] 2R_12250194_SNP [dm6]	T	C	6.815e^-5	0.376	INTERGENIC
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	6.815e^-5	0.376	INTERGENIC
2R	8138196	2R_8138196_SNP [dm3] 2R_12250691_SNP [dm6]	A	G	6.815e^-5	0.376	INTERGENIC
2R	8141432	2R_8141432_SNP [dm3] 2R_12253927_SNP [dm6]	C	A	6.815e^-5	0.376	UPSTREAM CG13168 INTERGENIC
2R	8144686	2R_8144686_SNP [dm3] 2R_12257181_SNP [dm6]	C	T	6.815e^-5	0.376	UPSTREAM Vha36-2 INTERGENIC
2R	8145392	2R_8145392_SNP [dm3] 2R_12257887_SNP [dm6]	T	A	6.815e^-5	0.376	INTRON Vha36-2	TF binding site mE1_TFBS_cad
2R	8150362	2R_8150362_SNP [dm3] 2R_12262857_SNP [dm6]	A	G	6.815e^-5	0.376	INTRON Cam
3L	17590773	3L_17590773_SNP [dm3] 3L_17597673_SNP [dm6]	C	T	6.832e^-5	0.376	NON_SYNONYMOUS_CODING Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	26570788	3R_26570788_SNP [dm3] 3R_30745066_SNP [dm6]	A	C	6.832e^-5	0.376	SYNONYMOUS_CODING Npc2g DOWNSTREAM CG15543 & 1 other	TF binding site mE1_TFBS_cad
3R	3405861	3R_3405861_SNP [dm3] 3R_7580139_SNP [dm6]	C	A	6.832e^-5	0.376	INTRON CG34127
X	3951292	X_3951292_SNP [dm3] X_4057259_SNP [dm6]	C	A	6.832e^-5	0.376	INTERGENIC
2L	3755737	2L_3755737_SNP [dm3] 2L_3755737_SNP [dm6]	A	T	6.841e^-5	0.376	INTERGENIC
3L	17461845	3L_17461845_SNP [dm3] 3L_17468745_SNP [dm6]	G	C	6.844e^-5	0.376	INTERGENIC
3R	25963399	3R_25963399_SNP [dm3] 3R_30137677_SNP [dm6]	A	G	6.878e^-5	0.377	INTRON AdoR	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23243863	3R_23243863_SNP [dm3] 3R_27418141_SNP [dm6]	C	T	6.916e^-5	0.378	INTRON side
2R	9266647	2R_9266647_SNP [dm3] 2R_13379142_SNP [dm6]	G	A	7.030e^-5	0.378	INTERGENIC
3L	14490333	3L_14490333_SNP [dm3] 3L_14497233_SNP [dm6]	T	C	7.054e^-5	0.378	INTRON bbg
3R	17885244	3R_17885244_SNP [dm3] 3R_22059522_SNP [dm6]	C	T	7.059e^-5	0.378	INTRON how
2R	8154298	2R_8154298_SNP [dm3] 2R_12266793_SNP [dm6]	T	A	7.080e^-5	0.378	INTRON Cam
2L	17315626	2L_17315626_SNP [dm3] 2L_17315626_SNP [dm6]	G	T	7.120e^-5	0.378	INTERGENIC
3L	11343447	3L_11343447_SNP [dm3] 3L_11350347_SNP [dm6]	C	T	7.167e^-5	0.378	UPSTREAM CR45251 INTERGENIC
3L	11191321	3L_11191321_SNP [dm3] 3L_11198221_SNP [dm6]	A	C	7.235e^-5	0.378	UTR_3_PRIME Plod UPSTREAM GlcAT-P
2L	4005852	2L_4005852_SNP [dm3] 2L_4005852_SNP [dm6]	T	G	7.317e^-5	0.378	UPSTREAM CG15423 DOWNSTREAM CG15422 INTERGENIC
2R	8129590	2R_8129590_SNP [dm3] 2R_12242085_SNP [dm6]	T	C	7.336e^-5	0.378	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	9141929	2R_9141929_SNP [dm3] 2R_13254424_SNP [dm6]	A	C	7.367e^-5	0.378	UPSTREAM CG4714 DOWNSTREAM CR44343 INTERGENIC	TF binding site mE1_TFBS_cad
3R	22719064	3R_22719064_INS [dm3] 3R_26893342_INS [dm6]	C	CC	7.407e^-5	0.378	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16756049	3L_16756049_SNP [dm3] 3L_16762949_SNP [dm6]	G	T	7.434e^-5	0.378	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	15381514	X_15381514_SNP [dm3] X_15487481_SNP [dm6]	G	A	7.478e^-5	0.378	DOWNSTREAM CG6340 INTRON Gmap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17674490	X_17674490_DEL [dm3] X_17780457_DEL [dm6]	GTTTAATAA	G	7.486e^-5	0.378	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	17668372	3L_17668372_SNP [dm3] 3L_17675272_SNP [dm6]	T	C	7.499e^-5	0.378	INTRON CG34251
2R	11529655	2R_11529655_SNP [dm3] 2R_15642150_SNP [dm6]	C	T	7.502e^-5	0.378	INTRON CG42524
3R	2724774	3R_2724774_SNP [dm3] 3R_6899052_SNP [dm6]	A	T	7.504e^-5	0.378	INTRON Antp
2R	7072455	2R_7072455_SNP [dm3] 2R_11184950_SNP [dm6]	A	G	7.518e^-5	0.378	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8119561	2R_8119561_SNP [dm3] 2R_12232056_SNP [dm6]	C	T	7.690e^-5	0.378	INTERGENIC
2R	8132380	2R_8132380_SNP [dm3] 2R_12244875_SNP [dm6]	A	T	7.690e^-5	0.378	UPSTREAM CG43244 INTERGENIC
2R	8150268	2R_8150268_SNP [dm3] 2R_12262763_SNP [dm6]	A	G	7.690e^-5	0.378	INTRON Cam	TF binding site BDTNP1_TFBS_dl
2L	16375041	2L_16375041_SNP [dm3] 2L_16375041_SNP [dm6]	T	A	7.784e^-5	0.378	INTERGENIC
2R	5133418	2R_5133418_SNP [dm3] 2R_9245913_SNP [dm6]	C	T	7.799e^-5	0.378	INTRON hig
2R	5133419	2R_5133419_SNP [dm3] 2R_9245914_SNP [dm6]	A	C	7.799e^-5	0.378	INTRON hig
2R	5133430	2R_5133430_SNP [dm3] 2R_9245925_SNP [dm6]	G	T	7.799e^-5	0.378	INTRON hig
2R	5133434	2R_5133434_SNP [dm3] 2R_9245929_SNP [dm6]	T	A	7.799e^-5	0.378	INTRON hig
3L	16711977	3L_16711977_SNP [dm3] 3L_16718877_SNP [dm6]	A	T	7.799e^-5	0.378	NON_SYNONYMOUS_CODING Dab	TF binding site mE1_TFBS_chinmo
3L	4691902	3L_4691902_DEL [dm3] 3L_4691902_DEL [dm6]	TG	T	7.799e^-5	0.378	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
3R	12112726	3R_12112726_SNP [dm3] 3R_16287004_SNP [dm6]	T	A	7.799e^-5	0.378	INTRON gish
3R	12112854	3R_12112854_SNP [dm3] 3R_16287132_SNP [dm6]	A	T	7.799e^-5	0.378	INTRON gish
3R	12112895	3R_12112895_SNP [dm3] 3R_16287173_SNP [dm6]	G	A	7.799e^-5	0.378	INTRON gish
X	15377756	X_15377756_SNP [dm3] X_15483723_SNP [dm6]	T	G	7.799e^-5	0.378	UTR_3_PRIME CG6340 INTRON CG6340	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	15379054	X_15379054_SNP [dm3] X_15485021_SNP [dm6]	C	A	7.799e^-5	0.378	DOWNSTREAM CG6340 INTRON CG6340	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
X	15382573	X_15382573_SNP [dm3] X_15488540_SNP [dm6]	A	T	7.799e^-5	0.378	INTRON Gmap
X	15382577	X_15382577_SNP [dm3] X_15488544_SNP [dm6]	T	A	7.799e^-5	0.378	INTRON Gmap
X	15382607	X_15382607_SNP [dm3] X_15488574_SNP [dm6]	T	G	7.799e^-5	0.378	INTRON Gmap
X	15382636	X_15382636_SNP [dm3] X_15488603_SNP [dm6]	A	G	7.799e^-5	0.378	INTRON Gmap
X	15382652	X_15382652_SNP [dm3] X_15488619_SNP [dm6]	G	C	7.799e^-5	0.378	INTRON Gmap
X	15382826	X_15382826_SNP [dm3] X_15488793_SNP [dm6]	C	T	7.799e^-5	0.378	INTRON Gmap
3L	16087454	3L_16087454_SNP [dm3] 3L_16094354_SNP [dm6]	A	C	7.831e^-5	0.378	SYNONYMOUS_CODING ClC-c
2L	5492473	2L_5492473_SNP [dm3] 2L_5492473_SNP [dm6]	C	T	7.863e^-5	0.378	INTERGENIC
3R	2727733	3R_2727733_SNP [dm3] 3R_6902011_SNP [dm6]	G	T	7.865e^-5	0.378	INTRON Antp
2R	8136210	2R_8136210_SNP [dm3] 2R_12248705_SNP [dm6]	A	C	7.867e^-5	0.378	INTERGENIC
2R	8148681	2R_8148681_SNP [dm3] 2R_12261176_SNP [dm6]	G	A	7.867e^-5	0.378	DOWNSTREAM CR43900 INTRON Cam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	4532488	2R_4532488_INS [dm3] 2R_8644983_INS [dm6]	T	TTATG	7.911e^-5	0.38	INTERGENIC
X	17674543	X_17674543_SNP [dm3] X_17780510_SNP [dm6]	G	T	7.959e^-5	0.381	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8147573	2R_8147573_SNP [dm3] 2R_12260068_SNP [dm6]	A	C	7.975e^-5	0.381	UTR_5_PRIME Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	12633969	3L_12633969_SNP [dm3] 3L_12640869_SNP [dm6]	A	T	8.004e^-5	0.381	INTRON CR32111
X	4285589	X_4285589_SNP [dm3] X_4391556_SNP [dm6]	A	G	8.033e^-5	0.381	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13994327	2L_13994327_SNP [dm3] 2L_13994327_SNP [dm6]	G	A	8.039e^-5	0.381	INTRON rk
2L	2425273	2L_2425273_SNP [dm3] 2L_2425273_SNP [dm6]	G	T	8.209e^-5	0.386	DOWNSTREAM CG9886 & 1 other INTERGENIC
2L	528770	2L_528770_SNP [dm3] 2L_528770_SNP [dm6]	T	C	8.209e^-5	0.386	INTRON ush	regulatory region REDfly_CRMs
X	12775770	X_12775770_SNP [dm3] X_12881737_SNP [dm6]	G	A	8.435e^-5	0.395	INTRON Pde9
3L	5440960	3L_5440960_SNP [dm3] 3L_5447860_SNP [dm6]	T	C	8.469e^-5	0.395	INTERGENIC
2R	19941165	2R_19941165_SNP [dm3] 2R_24053642_SNP [dm6]	C	T	8.488e^-5	0.395	NON_SYNONYMOUS_CODING ppk29 DOWNSTREAM sei	TF binding site mE1_TFBS_sens
3L	17587349	3L_17587349_SNP [dm3] 3L_17594249_SNP [dm6]	C	T	8.489e^-5	0.395	INTRON Eip74EF
X	12304573	X_12304573_SNP [dm3] X_12410540_SNP [dm6]	A	C	8.512e^-5	0.395	DOWNSTREAM CG2574 & 1 other INTERGENIC
2R	19942254	2R_19942254_SNP [dm3] 2R_24054731_SNP [dm6]	A	G	8.526e^-5	0.395	SYNONYMOUS_CODING ppk29 UPSTREAM CG13563
2R	5941435	2R_5941435_SNP [dm3] 2R_10053930_SNP [dm6]	G	T	8.550e^-5	0.395	UPSTREAM CR44297 & 1 other DOWNSTREAM Def INTRON magu
2L	17427521	2L_17427521_SNP [dm3] 2L_17427521_SNP [dm6]	C	T	8.643e^-5	0.398	INTRON Dif
3R	2750893	3R_2750893_SNP [dm3] 3R_6925171_SNP [dm6]	C	G	8.652e^-5	0.398	INTRON Antp
2R	8136645	2R_8136645_SNP [dm3] 2R_12249140_SNP [dm6]	T	A	8.680e^-5	0.398	INTERGENIC
2R	8129166	2R_8129166_SNP [dm3] 2R_12241661_SNP [dm6]	A	C	8.711e^-5	0.398	NON_SYNONYMOUS_CODING CG43315 UPSTREAM CG43316 DOWNSTREAM CG13170
2R	8144683	2R_8144683_SNP [dm3] 2R_12257178_SNP [dm6]	G	T	8.790e^-5	0.4	UPSTREAM Vha36-2 INTERGENIC
3L	3071629	3L_3071629_INS [dm3] 3L_3071629_INS [dm6]	T	TT	8.798e^-5	0.4	UPSTREAM CG32486 & 1 other INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	16765380	2L_16765380_DEL [dm3] 2L_16765380_DEL [dm6]	ATAA	A	8.898e^-5	0.404	INTERGENIC	regulatory region REDfly_CRMs
2L	17451343	2L_17451343_SNP [dm3] 2L_17451343_SNP [dm6]	C	T	8.940e^-5	0.404	UPSTREAM dl INTERGENIC
3L	10126214	3L_10126214_SNP [dm3] 3L_10133114_SNP [dm6]	G	C	8.977e^-5	0.404	INTRON dpr6
2R	13592731	2R_13592731_SNP [dm3] 2R_17705226_SNP [dm6]	T	A	9.054e^-5	0.404	INTRON CG6424
2R	13592733	2R_13592733_SNP [dm3] 2R_17705228_SNP [dm6]	T	A	9.054e^-5	0.404	INTRON CG6424
3R	17885299	3R_17885299_SNP [dm3] 3R_22059577_SNP [dm6]	C	G	9.089e^-5	0.404	INTRON how
3L	4728137	3L_4728137_SNP [dm3] 3L_4728137_SNP [dm6]	A	G	9.107e^-5	0.404	INTRON RhoGEF64C
3R	23746926	3R_23746926_SNP [dm3] 3R_27921204_SNP [dm6]	C	A	9.155e^-5	0.404	UPSTREAM CG12259 DOWNSTREAM BCAS2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8129495	2R_8129495_SNP [dm3] 2R_12241990_SNP [dm6]	C	T	9.215e^-5	0.404	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8131380	2R_8131380_SNP [dm3] 2R_12243875_SNP [dm6]	A	T	9.215e^-5	0.404	DOWNSTREAM CG43244 & 1 other INTERGENIC
2R	8131856	2R_8131856_DEL [dm3] 2R_12244351_DEL [dm6]	CCGCTA	T	9.215e^-5	0.404	INTRON CG43244
2R	8131869	2R_8131869_SNP [dm3] 2R_12244364_SNP [dm6]	A	T	9.215e^-5	0.404	INTRON CG43244
2R	8132828	2R_8132828_SNP [dm3] 2R_12245323_SNP [dm6]	C	A	9.215e^-5	0.404	UPSTREAM CG43244 INTERGENIC
2R	8138603	2R_8138603_SNP [dm3] 2R_12251098_SNP [dm6]	A	G	9.215e^-5	0.404	INTERGENIC
3R	11003476	3R_11003476_SNP [dm3] 3R_15177754_SNP [dm6]	A	C	9.253e^-5	0.404	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
2R	8129294	2R_8129294_SNP [dm3] 2R_12241789_SNP [dm6]	G	C	9.269e^-5	0.404	UTR_3_PRIME CG43315 UPSTREAM CG43316 DOWNSTREAM CG13170
2R	8136809	2R_8136809_SNP [dm3] 2R_12249304_SNP [dm6]	G	T	9.270e^-5	0.404	INTERGENIC
3L	18222093	3L_18222093_SNP [dm3] 3L_18228993_SNP [dm6]	C	A	9.379e^-5	0.406	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27143639	3R_27143639_SNP [dm3] 3R_31317917_SNP [dm6]	G	C	9.399e^-5	0.406	INTRON CG34347
X	1951815	X_1951815_SNP [dm3] X_2057782_SNP [dm6]	G	A	9.453e^-5	0.406	INTRON Sik2	TF binding site mE1_TFBS_chinmo
2R	8149542	2R_8149542_SNP [dm3] 2R_12262037_SNP [dm6]	G	T	9.454e^-5	0.406	INTRON Cam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2R	8135142	2R_8135142_SNP [dm3] 2R_12247637_SNP [dm6]	A	G	9.454e^-5	0.406	UPSTREAM CR44315 INTERGENIC
3R	16295344	3R_16295344_SNP [dm3] 3R_20469622_SNP [dm6]	A	G	9.456e^-5	0.406	INTRON Gfrl
2R	8132346	2R_8132346_SNP [dm3] 2R_12244841_SNP [dm6]	C	T	9.471e^-5	0.406	UPSTREAM CG43244 INTERGENIC
3L	4839403	3L_4839403_SNP [dm3] 3L_4839403_SNP [dm6]	C	A	9.566e^-5	0.409	UTR_5_PRIME CG13707 INTRON CG13707
2L	7331573	2L_7331573_SNP [dm3] 2L_7331573_SNP [dm6]	T	C	9.609e^-5	0.41	INTERGENIC
3L	19077810	3L_19077810_INS [dm3] 3L_19084710_INS [dm6]	T	TTT	9.695e^-5	0.41	INTRON Mkp3	TF binding site BDTNP1_TFBS_dl
2L	3755852	2L_3755852_SNP [dm3] 2L_3755852_SNP [dm6]	G	A	9.704e^-5	0.41	INTERGENIC
2R	14299067	2R_14299067_INS [dm3] 2R_18411562_INS [dm6]	T	CGGC	9.706e^-5	0.41	UTR_5_PRIME imd UPSTREAM Dp1 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	17927618	2R_17927618_DEL [dm3] 2R_22040113_DEL [dm6]	GACAGC	G	9.719e^-5	0.41	UPSTREAM CG34370 INTERGENIC
2R	11529673	2R_11529673_SNP [dm3] 2R_15642168_SNP [dm6]	C	A	9.722e^-5	0.41	INTRON CG42524
3L	14501099	3L_14501099_SNP [dm3] 3L_14507999_SNP [dm6]	T	C	9.793e^-5	0.412	SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17315624	2L_17315624_INS [dm3] 2L_17315624_INS [dm6]	C	CTTCTTTG	9.823e^-5	0.412	INTERGENIC
3L	17433694	3L_17433694_SNP [dm3] 3L_17440594_SNP [dm6]	A	C	9.839e^-5	0.412	INTRON CG18265
2R	8132371	2R_8132371_SNP [dm3] 2R_12244866_SNP [dm6]	C	A	9.997e^-5	0.412	UPSTREAM CG43244 INTERGENIC
X	15382604	X_15382604_SNP [dm3] X_15488571_SNP [dm6]	A	C	1.000e^-4	0.412	INTRON Gmap
X	15382614	X_15382614_SNP [dm3] X_15488581_SNP [dm6]	T	C	1.000e^-4	0.412	INTRON Gmap
3R	11615390	3R_11615390_SNP [dm3] 3R_15789668_SNP [dm6]	G	C	1.002e^-4	0.412	UTR_3_PRIME c_3_G DOWNSTREAM CG9589
3R	11180882	3R_11180882_DEL [dm3] 3R_15355160_DEL [dm6]	CC	A	1.003e^-4	0.412	INTRON Atg4b
2R	16965207	2R_16965207_DEL [dm3] 2R_21077702_DEL [dm6]	GA	G	1.008e^-4	0.412	INTRON Treh
2R	15912792	2R_15912792_SNP [dm3] 2R_20025287_SNP [dm6]	G	T	1.013e^-4	0.412	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	15374657	X_15374657_SNP [dm3] X_15480624_SNP [dm6]	C	T	1.013e^-4	0.412	SYNONYMOUS_CODING CG6324 INTRON CG6324
2R	14301117	2R_14301117_SNP [dm3] 2R_18413612_SNP [dm6]	T	A	1.020e^-4	0.412	UPSTREAM Dp1 & 1 other INTRON Dp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6048512	2L_6048512_SNP [dm3] 2L_6048512_SNP [dm6]	G	C	1.024e^-4	0.412	SPLICE_SITE_REGION CG12393 SYNONYMOUS_CODING CG34179 UTR_5_PRIME slmo & 1 other UPSTREAM CG12393 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20533554	3R_20533554_SNP [dm3] 3R_24707832_SNP [dm6]	A	T	1.024e^-4	0.412	UTR_3_PRIME slo
3R	2611592	3R_2611592_SNP [dm3] 3R_6785870_SNP [dm6]	A	T	1.026e^-4	0.412	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_inv
3L	21252333	3L_21252333_SNP [dm3] 3L_21259233_SNP [dm6]	A	G	1.027e^-4	0.412	DOWNSTREAM CG43218 INTRON Eip78C
X	16072849	X_16072849_SNP [dm3] X_16178816_SNP [dm6]	C	T	1.028e^-4	0.412	INTERGENIC
3R	9776705	3R_9776705_SNP [dm3] 3R_13950983_SNP [dm6]	G	C	1.033e^-4	0.412	SYNONYMOUS_CODING CG9926
2L	5733573	2L_5733573_SNP [dm3] 2L_5733573_SNP [dm6]	T	G	1.040e^-4	0.412	DOWNSTREAM CG11147 INTRON CG11030
X	14753310	X_14753310_SNP [dm3] X_14859277_SNP [dm6]	C	T	1.042e^-4	0.412	INTRON Flo2
3L	17423099	3L_17423099_SNP [dm3] 3L_17429999_SNP [dm6]	C	T	1.044e^-4	0.412	SYNONYMOUS_CODING CG32174 UTR_3_PRIME frc
2R	8132443	2R_8132443_SNP [dm3] 2R_12244938_SNP [dm6]	G	A	1.045e^-4	0.412	UPSTREAM CG43244 INTERGENIC
3R	17885238	3R_17885238_SNP [dm3] 3R_22059516_SNP [dm6]	G	T	1.048e^-4	0.412	INTRON how
3R	17885239	3R_17885239_SNP [dm3] 3R_22059517_SNP [dm6]	C	T	1.048e^-4	0.412	INTRON how
2R	8118204	2R_8118204_SNP [dm3] 2R_12230699_SNP [dm6]	A	C	1.052e^-4	0.412	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8983447	2R_8983447_SNP [dm3] 2R_13095942_SNP [dm6]	C	T	1.057e^-4	0.412	INTERGENIC	TF binding site mE1_TFBS_inv
3L	16685393	3L_16685393_SNP [dm3] 3L_16692293_SNP [dm6]	C	T	1.071e^-4	0.412	INTRON Lasp & 2 others	TF binding site mE1_TFBS_cad
2L	5709844	2L_5709844_SNP [dm3] 2L_5709844_SNP [dm6]	A	G	1.082e^-4	0.412	UPSTREAM CG7236 INTRON CG7236
3R	22874077	3R_22874077_INS [dm3] 3R_27048355_INS [dm6]	A	ATA	1.094e^-4	0.412	UPSTREAM TwdlT INTRON RYa-R
3R	22874084	3R_22874084_SNP [dm3] 3R_27048362_SNP [dm6]	C	T	1.094e^-4	0.412	UPSTREAM TwdlT INTRON RYa-R
2R	10256561	2R_10256561_SNP [dm3] 2R_14369056_SNP [dm6]	T	G	1.095e^-4	0.412	UTR_3_PRIME CG34443 UPSTREAM CG34444
2R	6469574	2R_6469574_SNP [dm3] 2R_10582069_SNP [dm6]	T	A	1.106e^-4	0.412	INTRON psq	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	16293890	3R_16293890_SNP [dm3] 3R_20468168_SNP [dm6]	T	C	1.106e^-4	0.412	INTRON Gfrl
3R	2611638	3R_2611638_SNP [dm3] 3R_6785916_SNP [dm6]	T	A	1.109e^-4	0.412	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_inv
2L	5386985	2L_5386985_SNP [dm3] 2L_5386985_SNP [dm6]	G	A	1.111e^-4	0.412	UPSTREAM CR44745 INTERGENIC	TF binding site mE1_TFBS_inv
3L	4664801	3L_4664801_SNP [dm3] 3L_4664801_SNP [dm6]	A	G	1.111e^-4	0.412	SYNONYMOUS_CODING axo
3L	7601186	3L_7601186_SNP [dm3] 3L_7608086_SNP [dm6]	T	C	1.111e^-4	0.412	INTRON CG33275	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10143454	X_10143454_SNP [dm3] X_10249421_SNP [dm6]	A	G	1.111e^-4	0.412	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10143477	X_10143477_SNP [dm3] X_10249444_SNP [dm6]	A	C	1.111e^-4	0.412	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10143563	X_10143563_SNP [dm3] X_10249530_SNP [dm6]	T	C	1.111e^-4	0.412	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10143574	X_10143574_SNP [dm3] X_10249541_SNP [dm6]	G	A	1.111e^-4	0.412	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10143593	X_10143593_SNP [dm3] X_10249560_SNP [dm6]	T	C	1.111e^-4	0.412	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10143620	X_10143620_SNP [dm3] X_10249587_SNP [dm6]	G	T	1.111e^-4	0.412	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10143621	X_10143621_SNP [dm3] X_10249588_SNP [dm6]	A	G	1.111e^-4	0.412	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10143646	X_10143646_SNP [dm3] X_10249613_SNP [dm6]	A	T	1.111e^-4	0.412	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10143695	X_10143695_SNP [dm3] X_10249662_SNP [dm6]	T	A	1.111e^-4	0.412	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2703012	3R_2703012_SNP [dm3] 3R_6877290_SNP [dm6]	G	T	1.114e^-4	0.412	DOWNSTREAM CR44931 INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	2710953	3R_2710953_SNP [dm3] 3R_6885231_SNP [dm6]	C	G	1.114e^-4	0.412	EXON CR44931	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2715956	3R_2715956_DEL [dm3] 3R_6890234_DEL [dm6]	GG	T	1.114e^-4	0.412	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	2720026	3R_2720026_SNP [dm3] 3R_6894304_SNP [dm6]	C	G	1.114e^-4	0.412	UPSTREAM CR45559 DOWNSTREAM CR44932 INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	2721755	3R_2721755_SNP [dm3] 3R_6896033_SNP [dm6]	C	T	1.114e^-4	0.412	DOWNSTREAM Antp INTRON CR44932
3R	2723983	3R_2723983_SNP [dm3] 3R_6898261_SNP [dm6]	C	A	1.114e^-4	0.412	UTR_3_PRIME Antp
3R	2726411	3R_2726411_SNP [dm3] 3R_6900689_SNP [dm6]	C	T	1.114e^-4	0.412	INTRON Antp
3R	2739165	3R_2739165_SNP [dm3] 3R_6913443_SNP [dm6]	C	T	1.114e^-4	0.412	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
3R	2742908	3R_2742908_SNP [dm3] 3R_6917186_SNP [dm6]	G	A	1.114e^-4	0.412	INTRON Antp	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	2748210	3R_2748210_SNP [dm3] 3R_6922488_SNP [dm6]	A	G	1.114e^-4	0.412	INTRON Antp	TF binding site mE1_TFBS_HSA
3R	2760208	3R_2760208_SNP [dm3] 3R_6934486_SNP [dm6]	G	A	1.114e^-4	0.412	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2764448	3R_2764448_SNP [dm3] 3R_6938726_SNP [dm6]	C	A	1.114e^-4	0.412	INTRON Antp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
X	15138508	X_15138508_SNP [dm3] X_15244475_SNP [dm6]	C	A	1.127e^-4	0.416	SYNONYMOUS_CODING PPYR1
2L	14148711	2L_14148711_SNP [dm3] 2L_14148711_SNP [dm6]	G	A	1.137e^-4	0.417	INTRON CG17341
2L	3170398	2L_3170398_SNP [dm3] 2L_3170398_SNP [dm6]	T	C	1.140e^-4	0.417	NON_SYNONYMOUS_CODING CG44002 DOWNSTREAM Hydr2 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	3170447	2L_3170447_SNP [dm3] 2L_3170447_SNP [dm6]	T	G	1.140e^-4	0.417	NON_SYNONYMOUS_CODING CG44002 DOWNSTREAM Hydr2 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	3170448	2L_3170448_SNP [dm3] 2L_3170448_SNP [dm6]	T	C	1.140e^-4	0.417	SYNONYMOUS_CODING CG44002 DOWNSTREAM Hydr2 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	10645754	3R_10645754_SNP [dm3] 3R_14820032_SNP [dm6]	G	T	1.140e^-4	0.417	NON_SYNONYMOUS_CODING btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11420890	3L_11420890_INS [dm3] 3L_11427790_INS [dm6]	G	GC	1.154e^-4	0.42	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	11420896	3L_11420896_INS [dm3] 3L_11427796_INS [dm6]	A	ATGT	1.154e^-4	0.42	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	24121253	3R_24121253_SNP [dm3] 3R_28295531_SNP [dm6]	A	G	1.170e^-4	0.424	UPSTREAM CR44229 DOWNSTREAM CG17856 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6021191	2L_6021191_SNP [dm3] 2L_6021191_SNP [dm6]	T	C	1.173e^-4	0.424	INTRON CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6021205	2L_6021205_SNP [dm3] 2L_6021205_SNP [dm6]	G	T	1.173e^-4	0.424	INTRON CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8131374	2R_8131374_SNP [dm3] 2R_12243869_SNP [dm6]	G	A	1.184e^-4	0.425	DOWNSTREAM CG43244 & 1 other INTERGENIC
2L	13825927	2L_13825927_SNP [dm3] 2L_13825927_SNP [dm6]	C	T	1.189e^-4	0.425	NON_SYNONYMOUS_CODING tam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	1529223	3L_1529223_INS [dm3] 3L_1529223_INS [dm6]	G	GATG	1.189e^-4	0.425	CODON_INSERTION CG12090 DOWNSTREAM Ir62a INTRON CG12090
3R	18365542	3R_18365542_SNP [dm3] 3R_22539820_SNP [dm6]	A	G	1.191e^-4	0.425	UTR_5_PRIME CG5326 UPSTREAM CR45646
2R	10429172	2R_10429172_SNP [dm3] 2R_14541667_SNP [dm6]	C	T	1.194e^-4	0.425	INTRON ttv
X	2562806	X_2562806_SNP [dm3] X_2668773_SNP [dm6]	C	T	1.194e^-4	0.425	SYNONYMOUS_CODING sgg INTRON sgg
2R	8131753	2R_8131753_SNP [dm3] 2R_12244248_SNP [dm6]	C	G	1.198e^-4	0.425	DOWNSTREAM CG43316 INTRON CG43244
3R	12112803	3R_12112803_DEL [dm3] 3R_16287081_DEL [dm6]	TT	T	1.203e^-4	0.425	INTRON gish
2R	8126759	2R_8126759_SNP [dm3] 2R_12239254_SNP [dm6]	C	A	1.209e^-4	0.425	INTERGENIC
2L	19393921	2L_19393921_DEL [dm3] 2L_19393921_DEL [dm6]	TAACT	T	1.209e^-4	0.425	UPSTREAM CG31798 & 1 other INTRON CG17544	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	19393955	2L_19393955_SNP [dm3] 2L_19393955_SNP [dm6]	A	G	1.209e^-4	0.425	UPSTREAM CG31798 & 1 other INTRON CG17544	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	19409357	2L_19409357_SNP [dm3] 2L_19409357_SNP [dm6]	T	C	1.209e^-4	0.425	INTRON Pax	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	25802741	3R_25802741_SNP [dm3] 3R_29977019_SNP [dm6]	G	A	1.213e^-4	0.425	INTERGENIC
3R	25802767	3R_25802767_SNP [dm3] 3R_29977045_SNP [dm6]	C	A	1.213e^-4	0.425	INTERGENIC
2R	9805697	2R_9805697_SNP [dm3] 2R_13918192_SNP [dm6]	C	T	1.215e^-4	0.425	INTRON shot
3R	2771287	3R_2771287_SNP [dm3] 3R_6945565_SNP [dm6]	C	T	1.219e^-4	0.425	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	5941749	2R_5941749_SNP [dm3] 2R_10054244_SNP [dm6]	C	A	1.222e^-4	0.425	UTR_3_PRIME Def UPSTREAM CR44298 INTRON magu	TF binding site mE1_TFBS_cad
2R	8130544	2R_8130544_SNP [dm3] 2R_12243039_SNP [dm6]	T	A	1.224e^-4	0.425	DOWNSTREAM CG43244 INTRON CG43316
3R	10197843	3R_10197843_SNP [dm3] 3R_14372121_SNP [dm6]	G	A	1.226e^-4	0.425	UPSTREAM snoRNA:Me18S-G1189 INTRON NK7.1
3R	10997498	3R_10997498_SNP [dm3] 3R_15171776_SNP [dm6]	C	G	1.232e^-4	0.425	INTRON Mf & 1 other
3L	4604054	3L_4604054_SNP [dm3] 3L_4604054_SNP [dm6]	A	G	1.234e^-4	0.425	INTRON Src64B
2R	8174583	2R_8174583_SNP [dm3] 2R_12287078_SNP [dm6]	T	C	1.237e^-4	0.425	INTRON CG42700
2L	6837629	2L_6837629_SNP [dm3] 2L_6837629_SNP [dm6]	C	A	1.241e^-4	0.425	INTRON sens-2
2R	17475413	2R_17475413_SNP [dm3] 2R_21587908_SNP [dm6]	T	C	1.241e^-4	0.425	INTERGENIC
X	17714467	X_17714467_SNP [dm3] X_17820434_SNP [dm6]	A	T	1.241e^-4	0.425	UPSTREAM CG12986 DOWNSTREAM Socs16D INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	17714471	X_17714471_SNP [dm3] X_17820438_SNP [dm6]	T	A	1.241e^-4	0.425	UPSTREAM CG12986 DOWNSTREAM Socs16D INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	17714518	X_17714518_SNP [dm3] X_17820485_SNP [dm6]	A	G	1.241e^-4	0.425	UPSTREAM CG12986 DOWNSTREAM Socs16D INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	19739446	3R_19739446_SNP [dm3] 3R_23913724_SNP [dm6]	T	C	1.243e^-4	0.425	INTRON sba	TF binding site mE1_TFBS_Kr
3L	17458707	3L_17458707_SNP [dm3] 3L_17465607_SNP [dm6]	C	A	1.251e^-4	0.427	UPSTREAM CG7603 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12011790	3L_12011790_SNP [dm3] 3L_12018690_SNP [dm6]	C	T	1.258e^-4	0.427	INTRON rols
X	10143581	X_10143581_SNP [dm3] X_10249548_SNP [dm6]	C	T	1.258e^-4	0.427	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19543290	2R_19543290_SNP [dm3] 2R_23655767_SNP [dm6]	T	G	1.259e^-4	0.427	DOWNSTREAM retn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6950185	X_6950185_SNP [dm3] X_7056152_SNP [dm6]	G	A	1.268e^-4	0.427	INTRON CG12541
3R	13133420	3R_13133420_SNP [dm3] 3R_17307698_SNP [dm6]	G	A	1.270e^-4	0.427	INTERGENIC
2R	8152569	2R_8152569_SNP [dm3] 2R_12265064_SNP [dm6]	A	G	1.271e^-4	0.427	INTRON Cam
2R	12993230	2R_12993230_SNP [dm3] 2R_17105725_SNP [dm6]	T	A	1.276e^-4	0.427	INTRON CG30456
3L	18101340	3L_18101340_SNP [dm3] 3L_18108240_SNP [dm6]	G	T	1.277e^-4	0.427	SYNONYMOUS_CODING CG5147 DOWNSTREAM mRpS26	TF binding site mE1_TFBS_sens
3L	18101365	3L_18101365_SNP [dm3] 3L_18108265_SNP [dm6]	T	C	1.277e^-4	0.427	SYNONYMOUS_CODING CG5147 DOWNSTREAM mRpS26	TF binding site mE1_TFBS_sens
2R	8128436	2R_8128436_SNP [dm3] 2R_12240931_SNP [dm6]	G	T	1.277e^-4	0.427	UPSTREAM CG43315 DOWNSTREAM CG13170 INTERGENIC
2L	16793883	2L_16793883_SNP [dm3] 2L_16793883_SNP [dm6]	T	C	1.279e^-4	0.427	UPSTREAM Ugt36Ba DOWNSTREAM CG17928 INTERGENIC
2L	16793887	2L_16793887_SNP [dm3] 2L_16793887_SNP [dm6]	T	C	1.279e^-4	0.427	UPSTREAM Ugt36Ba DOWNSTREAM CG17928 INTERGENIC
X	10688692	X_10688692_SNP [dm3] X_10794659_SNP [dm6]	A	T	1.299e^-4	0.433	UTR_3_PRIME Imp DOWNSTREAM Imp EXON CR45204
X	20532495	X_20532495_SNP [dm3] X_20661468_SNP [dm6]	T	G	1.306e^-4	0.434	UPSTREAM CG1835 DOWNSTREAM Cyp6v1 INTERGENIC
2R	8117225	2R_8117225_SNP [dm3] 2R_12229720_SNP [dm6]	C	A	1.313e^-4	0.435	UPSTREAM CG8854 INTERGENIC
3L	4528389	3L_4528389_SNP [dm3] 3L_4528389_SNP [dm6]	G	T	1.316e^-4	0.435	INTRON Tie
3R	13648013	3R_13648013_SNP [dm3] 3R_17822291_SNP [dm6]	C	A	1.316e^-4	0.435	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22252792	3R_22252792_DEL [dm3] 3R_26427070_DEL [dm6]	TT	T	1.329e^-4	0.437	INTRON CR31084
3R	19854855	3R_19854855_SNP [dm3] 3R_24029133_SNP [dm6]	T	C	1.336e^-4	0.437	INTRON KrT95D
2R	20184184	2R_20184184_SNP [dm3] 2R_24296661_SNP [dm6]	C	T	1.342e^-4	0.437	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8178590	2R_8178590_SNP [dm3] 2R_12291085_SNP [dm6]	G	T	1.342e^-4	0.437	INTRON CG42700
X	12744473	X_12744473_SNP [dm3] X_12850440_SNP [dm6]	C	T	1.342e^-4	0.437	INTRON Pde9
2L	3271382	2L_3271382_SNP [dm3] 2L_3271382_SNP [dm6]	C	G	1.343e^-4	0.437	NON_SYNONYMOUS_CODING CG3347
2L	5491973	2L_5491973_SNP [dm3] 2L_5491973_SNP [dm6]	G	T	1.344e^-4	0.437	INTERGENIC
2L	10414084	2L_10414084_SNP [dm3] 2L_10414084_SNP [dm6]	C	A	1.349e^-4	0.437	UTR_5_PRIME Klp31E UPSTREAM CG5355 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	15819468	X_15819468_SNP [dm3] X_15925435_SNP [dm6]	A	G	1.349e^-4	0.437	DOWNSTREAM CG8916 INTRON Lcch3
X	19015240	X_19015240_SNP [dm3] X_19121207_SNP [dm6]	T	C	1.354e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	7403939	2R_7403939_SNP [dm3] 2R_11516434_SNP [dm6]	G	A	1.354e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	17412509	2R_17412509_SNP [dm3] 2R_21525004_SNP [dm6]	T	C	1.359e^-4	0.437	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	11000724	3R_11000724_SNP [dm3] 3R_15175002_SNP [dm6]	A	T	1.361e^-4	0.437	DOWNSTREAM Mf INTRON Mf & 1 other
3L	3864491	3L_3864491_SNP [dm3] 3L_3864491_SNP [dm6]	A	G	1.363e^-4	0.437	UPSTREAM CR45379 INTERGENIC
2R	18229036	2R_18229036_SNP [dm3] 2R_22341531_SNP [dm6]	G	T	1.367e^-4	0.437	SYNONYMOUS_CODING Liprin-gamma	TF binding site mE1_TFBS_cad
3R	23268888	3R_23268888_SNP [dm3] 3R_27443166_SNP [dm6]	T	C	1.379e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2724369	3R_2724369_SNP [dm3] 3R_6898647_SNP [dm6]	G	A	1.385e^-4	0.437	INTRON Antp
2L	19420212	2L_19420212_SNP [dm3] 2L_19420212_SNP [dm6]	T	A	1.387e^-4	0.437	DOWNSTREAM lectin-37Db INTRON Pax
2R	10548314	2R_10548314_INS [dm3] 2R_14660809_INS [dm6]	A	AA	1.396e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11095521	3R_11095521_SNP [dm3] 3R_15269799_SNP [dm6]	C	T	1.400e^-4	0.437	SYNONYMOUS_CODING Zip88E DOWNSTREAM Cp190	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1825977	2L_1825977_SNP [dm3] 2L_1825977_SNP [dm6]	A	T	1.401e^-4	0.437	INTRON CG31664
3R	25600829	3R_25600829_SNP [dm3] 3R_29775107_SNP [dm6]	T	A	1.404e^-4	0.437	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3073860	3L_3073860_SNP [dm3] 3L_3073860_SNP [dm6]	T	C	1.408e^-4	0.437	INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23265872	3R_23265872_DEL [dm3] 3R_27440150_DEL [dm6]	CAC	C	1.417e^-4	0.437	UPSTREAM CG43447 INTRON CG44290	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	16088159	3R_16088159_SNP [dm3] 3R_20262437_SNP [dm6]	T	C	1.432e^-4	0.437	INTRON cic	TF binding site mE1_TFBS_cad
2L	16041307	2L_16041307_SNP [dm3] 2L_16041307_SNP [dm6]	C	T	1.432e^-4	0.437	UTR_3_PRIME beat-Ic UPSTREAM BicC & 1 other DOWNSTREAM beat-Ic
2R	8144991	2R_8144991_SNP [dm3] 2R_12257486_SNP [dm6]	A	G	1.446e^-4	0.437	SYNONYMOUS_CODING Vha36-2	TF binding site mE1_TFBS_cad
2R	8145003	2R_8145003_SNP [dm3] 2R_12257498_SNP [dm6]	T	G	1.446e^-4	0.437	SYNONYMOUS_CODING Vha36-2	TF binding site mE1_TFBS_cad
2R	8145421	2R_8145421_SNP [dm3] 2R_12257916_SNP [dm6]	A	G	1.446e^-4	0.437	INTRON Vha36-2	TF binding site mE1_TFBS_cad
2R	8149837	2R_8149837_SNP [dm3] 2R_12262332_SNP [dm6]	C	T	1.446e^-4	0.437	INTRON Cam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z
2R	19942622	2R_19942622_SNP [dm3] 2R_24055099_SNP [dm6]	G	T	1.453e^-4	0.437	UPSTREAM CG13563 INTRON ppk29
3L	16911385	3L_16911385_SNP [dm3] 3L_16918285_SNP [dm6]	A	T	1.454e^-4	0.437	INTRON Lmpt
2L	6116933	2L_6116933_SNP [dm3] 2L_6116933_SNP [dm6]	T	G	1.460e^-4	0.437	INTRON stai
2L	510727	2L_510727_SNP [dm3] 2L_510727_SNP [dm6]	T	A	1.466e^-4	0.437	INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	19167410	3L_19167410_SNP [dm3] 3L_19174310_SNP [dm6]	T	C	1.473e^-4	0.437	INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	509888	3L_509888_SNP [dm3] 3L_509888_SNP [dm6]	C	T	1.477e^-4	0.437	INTRON klar
2L	16765272	2L_16765272_SNP [dm3] 2L_16765272_SNP [dm6]	A	G	1.485e^-4	0.437	INTERGENIC	regulatory region REDfly_CRMs
2R	11714319	2R_11714319_INS [dm3] 2R_15826814_INS [dm6]	T	TTT	1.487e^-4	0.437	UTR_3_PRIME Poxn INTRON tun
3L	17433692	3L_17433692_SNP [dm3] 3L_17440592_SNP [dm6]	T	G	1.497e^-4	0.437	INTRON CG18265
3R	26601970	3R_26601970_SNP [dm3] 3R_30776248_SNP [dm6]	C	T	1.497e^-4	0.437	INTRON zfh1	TF binding site BDTNP1_TFBS_dl
3R	2764090	3R_2764090_SNP [dm3] 3R_6938368_SNP [dm6]	C	T	1.498e^-4	0.437	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	2737960	3R_2737960_SNP [dm3] 3R_6912238_SNP [dm6]	G	T	1.503e^-4	0.437	INTRON Antp	insulator Insulator_Class_II.mE01 Insulator_Class_I.mE01 silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_zfh1
3R	2764207	3R_2764207_SNP [dm3] 3R_6938485_SNP [dm6]	C	T	1.503e^-4	0.437	INTRON Antp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8129658	2R_8129658_SNP [dm3] 2R_12242153_SNP [dm6]	C	A	1.511e^-4	0.437	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8152576	2R_8152576_SNP [dm3] 2R_12265071_SNP [dm6]	C	A	1.519e^-4	0.437	INTRON Cam
2R	8152613	2R_8152613_DEL [dm3] 2R_12265108_DEL [dm6]	TGCAA	T	1.519e^-4	0.437	INTRON Cam
2R	8152619	2R_8152619_DEL [dm3] 2R_12265114_DEL [dm6]	TG	T	1.519e^-4	0.437	INTRON Cam
2R	8152625	2R_8152625_SNP [dm3] 2R_12265120_SNP [dm6]	C	A	1.519e^-4	0.437	INTRON Cam
2R	8152635	2R_8152635_SNP [dm3] 2R_12265130_SNP [dm6]	C	T	1.519e^-4	0.437	INTRON Cam
2R	8152636	2R_8152636_SNP [dm3] 2R_12265131_SNP [dm6]	A	T	1.519e^-4	0.437	INTRON Cam
2R	8152689	2R_8152689_SNP [dm3] 2R_12265184_SNP [dm6]	A	G	1.519e^-4	0.437	INTRON Cam
2R	8152763	2R_8152763_INS [dm3] 2R_12265258_INS [dm6]	G	GG	1.519e^-4	0.437	INTRON Cam
3R	13495100	3R_13495100_SNP [dm3] 3R_17669378_SNP [dm6]	A	G	1.525e^-4	0.437	UTR_3_PRIME CG14322 & 1 other DOWNSTREAM CG14322
3R	11003629	3R_11003629_SNP [dm3] 3R_15177907_SNP [dm6]	G	T	1.527e^-4	0.437	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
3R	2706061	3R_2706061_SNP [dm3] 3R_6880339_SNP [dm6]	T	A	1.529e^-4	0.437	INTRON CR44931	regulatory region FlyBase REDfly_CRMs
3R	2707142	3R_2707142_SNP [dm3] 3R_6881420_SNP [dm6]	T	G	1.529e^-4	0.437	INTRON CR44931	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2737985	3R_2737985_SNP [dm3] 3R_6912263_SNP [dm6]	T	C	1.529e^-4	0.437	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	2737994	3R_2737994_SNP [dm3] 3R_6912272_SNP [dm6]	A	C	1.529e^-4	0.437	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	2738041	3R_2738041_SNP [dm3] 3R_6912319_SNP [dm6]	G	A	1.529e^-4	0.437	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	2738045	3R_2738045_SNP [dm3] 3R_6912323_SNP [dm6]	T	C	1.529e^-4	0.437	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	2738189	3R_2738189_SNP [dm3] 3R_6912467_SNP [dm6]	C	T	1.529e^-4	0.437	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	2738276	3R_2738276_SNP [dm3] 3R_6912554_SNP [dm6]	A	T	1.529e^-4	0.437	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	2738299	3R_2738299_SNP [dm3] 3R_6912577_SNP [dm6]	A	G	1.529e^-4	0.437	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	16294550	3R_16294550_SNP [dm3] 3R_20468828_SNP [dm6]	C	A	1.529e^-4	0.437	INTRON Gfrl
3R	2729350	3R_2729350_SNP [dm3] 3R_6903628_SNP [dm6]	C	A	1.537e^-4	0.437	INTRON Antp EXON CR43252	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18509115	2R_18509115_SNP [dm3] 2R_22621610_SNP [dm6]	A	G	1.561e^-4	0.437	INTRON CG33143	TF binding site mE1_TFBS_inv
2L	19394002	2L_19394002_SNP [dm3] 2L_19394002_SNP [dm6]	G	A	1.563e^-4	0.437	UPSTREAM CG31798 & 1 other INTRON CG17544	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2R	19940973	2R_19940973_SNP [dm3] 2R_24053450_SNP [dm6]	T	A	1.567e^-4	0.437	NON_SYNONYMOUS_CODING ppk29 UTR_3_PRIME ppk29 DOWNSTREAM sei
3R	7423703	3R_7423703_SNP [dm3] 3R_11597981_SNP [dm6]	A	T	1.578e^-4	0.437	INTRON Jupiter
3R	8138964	3R_8138964_SNP [dm3] 3R_12313242_SNP [dm6]	A	C	1.580e^-4	0.437	DOWNSTREAM CG4066 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11000702	3R_11000702_DEL [dm3] 3R_15174980_DEL [dm6]	GTTTT	G	1.580e^-4	0.437	DOWNSTREAM Mf INTRON Mf & 1 other
2R	8950127	2R_8950127_SNP [dm3] 2R_13062622_SNP [dm6]	A	G	1.582e^-4	0.437	INTRON Drl-2
X	6788208	X_6788208_SNP [dm3] X_6894175_SNP [dm6]	C	A	1.583e^-4	0.437	INTERGENIC
2L	7634876	2L_7634876_SNP [dm3] 2L_7634876_SNP [dm6]	C	T	1.590e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11001731	3R_11001731_SNP [dm3] 3R_15176009_SNP [dm6]	C	A	1.597e^-4	0.437	UTR_3_PRIME Mf INTRON Mf & 1 other
3R	11001735	3R_11001735_SNP [dm3] 3R_15176013_SNP [dm6]	T	A	1.597e^-4	0.437	UTR_3_PRIME Mf INTRON Mf & 1 other
2R	2438711	2R_2438711_SNP [dm3] 2R_6551206_SNP [dm6]	T	A	1.612e^-4	0.437	INTRON jing
X	681570	X_681570_SNP [dm3] X_787537_SNP [dm6]	A	G	1.613e^-4	0.437	DOWNSTREAM CG13360 INTRON tw
3R	11003845	3R_11003845_SNP [dm3] 3R_15178123_SNP [dm6]	T	C	1.616e^-4	0.437	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
3R	13982143	3R_13982143_SNP [dm3] 3R_18156421_SNP [dm6]	G	T	1.616e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13982144	3R_13982144_SNP [dm3] 3R_18156422_SNP [dm6]	G	A	1.616e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11629702	3L_11629702_SNP [dm3] 3L_11636602_SNP [dm6]	A	T	1.617e^-4	0.437	INTRON CG32091
2L	909370	2L_909370_SNP [dm3] 2L_909370_SNP [dm6]	G	A	1.624e^-4	0.437	INTERGENIC
X	686314	X_686314_SNP [dm3] X_792281_SNP [dm6]	C	T	1.627e^-4	0.437	UPSTREAM CG16989 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	14177852	3L_14177852_INS [dm3] 3L_14184752_INS [dm6]	T	TTT	1.632e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10936033	3R_10936033_SNP [dm3] 3R_15110311_SNP [dm6]	C	T	1.632e^-4	0.437	INTRON CG42788	TF binding site BDTNP1_TFBS_twi
3R	10936045	3R_10936045_SNP [dm3] 3R_15110323_SNP [dm6]	A	G	1.632e^-4	0.437	INTRON CG42788	TF binding site BDTNP1_TFBS_twi
3R	10936052	3R_10936052_SNP [dm3] 3R_15110330_SNP [dm6]	C	G	1.632e^-4	0.437	INTRON CG42788	TF binding site BDTNP1_TFBS_twi
3L	8438898	3L_8438898_SNP [dm3] 3L_8445798_SNP [dm6]	G	T	1.640e^-4	0.437	INTRON CG6983	TF binding site BDTNP1_TFBS_twi
3L	8438899	3L_8438899_SNP [dm3] 3L_8445799_SNP [dm6]	C	T	1.640e^-4	0.437	INTRON CG6983	TF binding site BDTNP1_TFBS_twi
2L	19400329	2L_19400329_SNP [dm3] 2L_19400329_SNP [dm6]	A	C	1.640e^-4	0.437	DOWNSTREAM Pax INTERGENIC
2L	19403187	2L_19403187_SNP [dm3] 2L_19403187_SNP [dm6]	A	G	1.640e^-4	0.437	UTR_3_PRIME Pax DOWNSTREAM snmRNA:359 INTRON Pax	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
2R	7783290	2R_7783290_SNP [dm3] 2R_11895785_SNP [dm6]	T	C	1.646e^-4	0.437	DOWNSTREAM MCPH1 & 1 other INTERGENIC
3L	17433713	3L_17433713_SNP [dm3] 3L_17440613_SNP [dm6]	G	A	1.661e^-4	0.437	INTRON CG18265
3R	15314811	3R_15314811_SNP [dm3] 3R_19489089_SNP [dm6]	G	C	1.670e^-4	0.437	DOWNSTREAM CG15025 INTRON Dys
X	17714433	X_17714433_SNP [dm3] X_17820400_SNP [dm6]	A	G	1.670e^-4	0.437	UPSTREAM CG12986 DOWNSTREAM Socs16D INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	495458	2L_495458_SNP [dm3] 2L_495458_SNP [dm6]	C	T	1.672e^-4	0.437	INTRON ush
2L	19686941	2L_19686941_SNP [dm3] 2L_19686941_SNP [dm6]	G	A	1.675e^-4	0.437	INTRON Lar
3R	22788380	3R_22788380_SNP [dm3] 3R_26962658_SNP [dm6]	A	G	1.681e^-4	0.437	UTR_3_PRIME Tsp97E INTRON Tsp97E
2R	6320515	2R_6320515_SNP [dm3] 2R_10433010_SNP [dm6]	T	G	1.685e^-4	0.437	INTRON RanBPM	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4327818	3L_4327818_SNP [dm3] 3L_4327818_SNP [dm6]	A	G	1.686e^-4	0.437	SYNONYMOUS_CODING Cip4	TF binding site mE1_TFBS_cad
2R	6320234	2R_6320234_SNP [dm3] 2R_10432729_SNP [dm6]	G	T	1.694e^-4	0.437	INTRON RanBPM	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	12137723	X_12137723_SNP [dm3] X_12243690_SNP [dm6]	A	T	1.698e^-4	0.437	INTRON Ten-a
3R	11615272	3R_11615272_SNP [dm3] 3R_15789550_SNP [dm6]	C	T	1.700e^-4	0.437	UTR_3_PRIME c_3_G DOWNSTREAM CG9589
3R	11615318	3R_11615318_SNP [dm3] 3R_15789596_SNP [dm6]	A	T	1.700e^-4	0.437	UTR_3_PRIME c_3_G DOWNSTREAM CG9589
3L	4707878	3L_4707878_SNP [dm3] 3L_4707878_SNP [dm6]	G	T	1.707e^-4	0.437	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20737134	2R_20737134_SNP [dm3] 2R_24849611_SNP [dm6]	C	T	1.714e^-4	0.437	SYNONYMOUS_CODING CG3650	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	8148264	2R_8148264_SNP [dm3] 2R_12260759_SNP [dm6]	A	G	1.732e^-4	0.437	INTRON Cam EXON CR43900	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	8150088	2R_8150088_SNP [dm3] 2R_12262583_SNP [dm6]	G	T	1.732e^-4	0.437	INTRON Cam	TF binding site BDTNP1_TFBS_dl
2R	8091180	2R_8091180_SNP [dm3] 2R_12203675_SNP [dm6]	C	A	1.733e^-4	0.437	INTERGENIC
X	13664741	X_13664741_SNP [dm3] X_13770708_SNP [dm6]	T	C	1.737e^-4	0.437	INTRON rdgB	TF binding site BDTNP1_TFBS_dl
3R	2742352	3R_2742352_SNP [dm3] 3R_6916630_SNP [dm6]	C	T	1.739e^-4	0.437	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	4514627	3L_4514627_SNP [dm3] 3L_4514627_SNP [dm6]	G	A	1.740e^-4	0.437	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20643540	X_20643540_SNP [dm3] X_20772513_SNP [dm6]	A	G	1.745e^-4	0.437	UTR_3_PRIME shakB
3R	2573307	3R_2573307_SNP [dm3] 3R_6747585_SNP [dm6]	T	C	1.749e^-4	0.437	NON_SYNONYMOUS_CODING CG34297
2L	16882867	2L_16882867_SNP [dm3] 2L_16882867_SNP [dm6]	C	T	1.749e^-4	0.437	INTRON CG31743 & 1 other
2L	4247068	2L_4247068_SNP [dm3] 2L_4247068_SNP [dm6]	G	A	1.749e^-4	0.437	INTRON CR44059
2R	17861931	2R_17861931_SNP [dm3] 2R_21974426_SNP [dm6]	C	A	1.759e^-4	0.437	SYNONYMOUS_CODING CG9304
3L	4707217	3L_4707217_SNP [dm3] 3L_4707217_SNP [dm6]	A	G	1.765e^-4	0.437	INTRON RhoGEF64C
3R	16015259	3R_16015259_SNP [dm3] 3R_20189537_SNP [dm6]	A	G	1.765e^-4	0.437	INTERGENIC
3L	15184163	3L_15184163_SNP [dm3] 3L_15191063_SNP [dm6]	G	A	1.775e^-4	0.437	DOWNSTREAM CR44562 INTERGENIC
3R	19540549	3R_19540549_SNP [dm3] 3R_23714827_SNP [dm6]	T	G	1.779e^-4	0.437	INTRON nau
3R	19540552	3R_19540552_SNP [dm3] 3R_23714830_SNP [dm6]	C	T	1.779e^-4	0.437	INTRON nau
2R	8125451	2R_8125451_SNP [dm3] 2R_12237946_SNP [dm6]	T	C	1.783e^-4	0.437	INTERGENIC
3R	14340092	3R_14340092_SNP [dm3] 3R_18514370_SNP [dm6]	A	G	1.800e^-4	0.437	UTR_5_PRIME fru INTRON fru
3L	1554161	3L_1554161_SNP [dm3] 3L_1554161_SNP [dm6]	C	G	1.804e^-4	0.437	SYNONYMOUS_CODING Cct2 DOWNSTREAM Cct1	TF binding site mE1_TFBS_cad
2L	2793977	2L_2793977_SNP [dm3] 2L_2793977_SNP [dm6]	G	A	1.808e^-4	0.437	INTRON Syt1
3R	2765002	3R_2765002_SNP [dm3] 3R_6939280_SNP [dm6]	A	C	1.809e^-4	0.437	INTRON Antp	regulatory region REDfly_CRMs
X	13664747	X_13664747_DEL [dm3] X_13770714_DEL [dm6]	AA	A	1.825e^-4	0.437	INTRON rdgB	TF binding site BDTNP1_TFBS_dl
2R	8132995	2R_8132995_SNP [dm3] 2R_12245490_SNP [dm6]	A	T	1.830e^-4	0.437	UPSTREAM CG43244 INTERGENIC
2R	8132996	2R_8132996_SNP [dm3] 2R_12245491_SNP [dm6]	T	C	1.830e^-4	0.437	UPSTREAM CG43244 INTERGENIC
3R	11004711	3R_11004711_SNP [dm3] 3R_15178989_SNP [dm6]	A	G	1.834e^-4	0.437	INTRON Gyc88E & 1 other
3L	837603	3L_837603_SNP [dm3] 3L_837603_SNP [dm6]	C	T	1.834e^-4	0.437	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	14949637	2L_14949637_SNP [dm3] 2L_14949637_SNP [dm6]	A	T	1.834e^-4	0.437	INTRON CG42313
2L	14949644	2L_14949644_SNP [dm3] 2L_14949644_SNP [dm6]	A	C	1.834e^-4	0.437	INTRON CG42313
3R	18505744	3R_18505744_SNP [dm3] 3R_22680022_SNP [dm6]	T	A	1.834e^-4	0.437	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13230339	3L_13230339_SNP [dm3] 3L_13237239_SNP [dm6]	A	C	1.840e^-4	0.437	INTRON caps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10208641	3R_10208641_SNP [dm3] 3R_14382919_SNP [dm6]	C	A	1.845e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	21906221	3L_21906221_SNP [dm3] 3L_21913121_SNP [dm6]	T	C	1.846e^-4	0.437	INTRON mub	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10126245	3L_10126245_SNP [dm3] 3L_10133145_SNP [dm6]	A	G	1.847e^-4	0.437	INTRON dpr6
2R	9172212	2R_9172212_SNP [dm3] 2R_13284707_SNP [dm6]	C	A	1.852e^-4	0.437	INTRON Dh31-R
3L	677254	3L_677254_SNP [dm3] 3L_677254_SNP [dm6]	T	A	1.852e^-4	0.437	DOWNSTREAM CG17129 INTERGENIC
2L	3579960	2L_3579960_SNP [dm3] 2L_3579960_SNP [dm6]	C	T	1.873e^-4	0.437	NON_SYNONYMOUS_CODING sob	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18379962	3R_18379962_SNP [dm3] 3R_22554240_SNP [dm6]	C	T	1.875e^-4	0.437	UPSTREAM bond INTRON bond
2L	16761415	2L_16761415_SNP [dm3] 2L_16761415_SNP [dm6]	T	G	1.878e^-4	0.437	UPSTREAM ppk17 INTERGENIC	regulatory region REDfly_CRMs
2R	15910481	2R_15910481_SNP [dm3] 2R_20022976_SNP [dm6]	G	A	1.888e^-4	0.437	INTERGENIC
3L	12011773	3L_12011773_SNP [dm3] 3L_12018673_SNP [dm6]	G	A	1.888e^-4	0.437	INTRON rols
3L	17455422	3L_17455422_SNP [dm3] 3L_17462322_SNP [dm6]	T	C	1.888e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17459937	3L_17459937_SNP [dm3] 3L_17466837_SNP [dm6]	G	A	1.888e^-4	0.437	DOWNSTREAM CG7603 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	17461049	3L_17461049_SNP [dm3] 3L_17467949_SNP [dm6]	T	C	1.888e^-4	0.437	INTERGENIC
3L	17463466	3L_17463466_SNP [dm3] 3L_17470366_SNP [dm6]	G	C	1.888e^-4	0.437	UTR_5_PRIME CG7589 UPSTREAM CG7589
3L	17465333	3L_17465333_SNP [dm3] 3L_17472233_SNP [dm6]	T	A	1.888e^-4	0.437	INTRON CG7589
3L	17465663	3L_17465663_DEL [dm3] 3L_17472563_DEL [dm6]	TATTCGAAT	T	1.888e^-4	0.437	INTRON CG7589
3L	17467418	3L_17467418_SNP [dm3] 3L_17474318_SNP [dm6]	T	G	1.888e^-4	0.437	SYNONYMOUS_CODING CG7589 UPSTREAM CG7580	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	10951246	2R_10951246_SNP [dm3] 2R_15063741_SNP [dm6]	C	T	1.889e^-4	0.437	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	4324221	2L_4324221_SNP [dm3] 2L_4324221_SNP [dm6]	T	G	1.890e^-4	0.437	UPSTREAM CG16857 DOWNSTREAM tutl INTERGENIC	TF binding site mE1_TFBS_sens
2L	6552710	2L_6552710_SNP [dm3] 2L_6552710_SNP [dm6]	T	C	1.894e^-4	0.437	DOWNSTREAM CR44776 INTERGENIC
3L	10922903	3L_10922903_SNP [dm3] 3L_10929803_SNP [dm6]	A	G	1.898e^-4	0.437	INTERGENIC
3R	2737784	3R_2737784_SNP [dm3] 3R_6912062_SNP [dm6]	G	C	1.898e^-4	0.437	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_zfh1
3L	1685481	3L_1685481_SNP [dm3] 3L_1685481_SNP [dm6]	A	G	1.903e^-4	0.437	INTRON CG7991
3L	1685492	3L_1685492_SNP [dm3] 3L_1685492_SNP [dm6]	C	G	1.903e^-4	0.437	INTRON CG7991
3L	1685494	3L_1685494_SNP [dm3] 3L_1685494_SNP [dm6]	G	T	1.903e^-4	0.437	INTRON CG7991
2L	3152943	2L_3152943_SNP [dm3] 2L_3152943_SNP [dm6]	T	A	1.904e^-4	0.437	UPSTREAM Mad INTRON Mad	TF binding site BDTNP1_TFBS_dl
3L	17577620	3L_17577620_SNP [dm3] 3L_17584520_SNP [dm6]	T	C	1.904e^-4	0.437	INTRON Eip74EF
3L	4604026	3L_4604026_SNP [dm3] 3L_4604026_SNP [dm6]	T	C	1.908e^-4	0.437	INTRON Src64B
3L	4604053	3L_4604053_SNP [dm3] 3L_4604053_SNP [dm6]	A	T	1.908e^-4	0.437	INTRON Src64B
2R	13213302	2R_13213302_SNP [dm3] 2R_17325797_SNP [dm6]	C	G	1.909e^-4	0.437	INTRON mbl
2L	3579763	2L_3579763_SNP [dm3] 2L_3579763_SNP [dm6]	G	A	1.909e^-4	0.437	SYNONYMOUS_CODING sob	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8236124	2L_8236124_DEL [dm3] 2L_8236124_DEL [dm6]	AATTGATAT	A	1.912e^-4	0.437	INTRON Pvr
X	14753180	X_14753180_SNP [dm3] X_14859147_SNP [dm6]	A	G	1.919e^-4	0.437	INTRON Flo2
3R	12755522	3R_12755522_SNP [dm3] 3R_16929800_SNP [dm6]	G	C	1.921e^-4	0.437	SYNONYMOUS_CODING Abd-B
3L	6096979	3L_6096979_SNP [dm3] 3L_6103879_SNP [dm6]	A	G	1.927e^-4	0.437	INTRON Ets65A
2R	16686613	2R_16686613_SNP [dm3] 2R_20799108_SNP [dm6]	A	G	1.928e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16686615	2R_16686615_DEL [dm3] 2R_20799110_DEL [dm6]	AA	A	1.928e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4707603	3L_4707603_SNP [dm3] 3L_4707603_SNP [dm6]	A	G	1.939e^-4	0.437	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl
3R	19739463	3R_19739463_SNP [dm3] 3R_23913741_SNP [dm6]	A	T	1.940e^-4	0.437	INTRON sba	TF binding site mE1_TFBS_Kr
2R	17176504	2R_17176504_SNP [dm3] 2R_21288999_SNP [dm6]	T	C	1.961e^-4	0.437	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
2L	19374824	2L_19374824_SNP [dm3] 2L_19374824_SNP [dm6]	G	C	1.964e^-4	0.437	INTERGENIC
2L	19400265	2L_19400265_SNP [dm3] 2L_19400265_SNP [dm6]	G	T	1.964e^-4	0.437	DOWNSTREAM Pax INTERGENIC
2L	19400218	2L_19400218_SNP [dm3] 2L_19400218_SNP [dm6]	C	T	1.967e^-4	0.437	DOWNSTREAM Pax INTERGENIC
3R	11099820	3R_11099820_SNP [dm3] 3R_15274098_SNP [dm6]	G	T	1.968e^-4	0.437	INTRON Cp190	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	7735135	3R_7735135_DEL [dm3] 3R_11909413_DEL [dm6]	CACCCGATAATTTCCCTTCG...	C	1.977e^-4	0.437	INTRON Cad87A	TF binding site mE1_TFBS_HSA
3L	17576148	3L_17576148_INS [dm3] 3L_17583048_INS [dm6]	A	AT	1.987e^-4	0.437	INTRON Eip74EF	TF binding site mE1_TFBS_inv
2R	5402861	2R_5402861_SNP [dm3] 2R_9515356_SNP [dm6]	C	G	1.993e^-4	0.437	INTRON brp	TF binding site mE1_TFBS_chinmo
3R	25233747	3R_25233747_SNP [dm3] 3R_29408025_SNP [dm6]	T	A	1.996e^-4	0.437	INTRON Ptp99A	TF binding site mE1_TFBS_inv
3R	23262549	3R_23262549_SNP [dm3] 3R_27436827_SNP [dm6]	A	C	1.997e^-4	0.437	UTR_5_PRIME side INTRON side	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11097435	3R_11097435_DEL [dm3] 3R_15271713_DEL [dm6]	ACTGCGTCAA	A	2.008e^-4	0.437		TF binding site mE1_TFBS_sens
3R	11003804	3R_11003804_SNP [dm3] 3R_15178082_SNP [dm6]	A	T	2.024e^-4	0.437	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
3L	11420881	3L_11420881_SNP [dm3] 3L_11427781_SNP [dm6]	A	G	2.026e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	11096142	2R_11096142_SNP [dm3] 2R_15208637_SNP [dm6]	G	A	2.035e^-4	0.437	SYNONYMOUS_CODING Ir51b INTRON row	TF binding site mE1_TFBS_sens
X	17714389	X_17714389_SNP [dm3] X_17820356_SNP [dm6]	A	T	2.038e^-4	0.437	UPSTREAM CG12986 DOWNSTREAM Socs16D INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	19636035	3L_19636035_SNP [dm3] 3L_19642935_SNP [dm6]	A	C	2.039e^-4	0.437	UPSTREAM CG8786 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14119130	2R_14119130_SNP [dm3] 2R_18231625_SNP [dm6]	G	A	2.051e^-4	0.437	UPSTREAM CR45311 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	8452793	2R_8452793_INS [dm3] 2R_12565288_INS [dm6]	T	TTCATTC	2.052e^-4	0.437	UPSTREAM CG33775 & 1 other INTERGENIC
2R	8452798	2R_8452798_SNP [dm3] 2R_12565293_SNP [dm6]	C	A	2.052e^-4	0.437	UPSTREAM CG33775 & 1 other INTERGENIC
2R	12993239	2R_12993239_SNP [dm3] 2R_17105734_SNP [dm6]	A	G	2.061e^-4	0.437	INTRON CG30456
3R	26937254	3R_26937254_SNP [dm3] 3R_31111532_SNP [dm6]	A	G	2.064e^-4	0.437	INTERGENIC
3R	26937258	3R_26937258_INS [dm3] 3R_31111536_INS [dm6]	T	TT	2.064e^-4	0.437	INTERGENIC
3R	26090157	3R_26090157_SNP [dm3] 3R_30264435_SNP [dm6]	A	G	2.067e^-4	0.437	INTERGENIC
2R	8125446	2R_8125446_SNP [dm3] 2R_12237941_SNP [dm6]	T	A	2.076e^-4	0.437	INTERGENIC
2R	8125489	2R_8125489_SNP [dm3] 2R_12237984_SNP [dm6]	C	T	2.076e^-4	0.437	INTERGENIC
2R	8125673	2R_8125673_SNP [dm3] 2R_12238168_SNP [dm6]	A	T	2.076e^-4	0.437	INTERGENIC
2R	8125681	2R_8125681_SNP [dm3] 2R_12238176_SNP [dm6]	A	G	2.076e^-4	0.437	INTERGENIC
2R	8125691	2R_8125691_SNP [dm3] 2R_12238186_SNP [dm6]	T	G	2.076e^-4	0.437	INTERGENIC
3R	6783143	3R_6783143_SNP [dm3] 3R_10957421_SNP [dm6]	T	G	2.080e^-4	0.437	INTERGENIC
3L	16210875	3L_16210875_SNP [dm3] 3L_16217775_SNP [dm6]	G	A	2.082e^-4	0.437	UPSTREAM CG13073 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10446466	2L_10446466_SNP [dm3] 2L_10446466_SNP [dm6]	G	A	2.085e^-4	0.437	INTRON loh	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	15088626	2L_15088626_SNP [dm3] 2L_15088626_SNP [dm6]	T	A	2.091e^-4	0.437	INTRON CG15270
3L	9935714	3L_9935714_SNP [dm3] 3L_9942614_SNP [dm6]	G	T	2.092e^-4	0.437	INTRON CG34356
X	2080781	X_2080781_INS [dm3] X_2186748_INS [dm6]	G	GTTG	2.093e^-4	0.437	UPSTREAM CG17777 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10845624	2R_10845624_SNP [dm3] 2R_14958119_SNP [dm6]	G	T	2.096e^-4	0.437	INTRON aPKC
2L	16375037	2L_16375037_SNP [dm3] 2L_16375037_SNP [dm6]	T	A	2.102e^-4	0.437	INTERGENIC
2R	8174456	2R_8174456_SNP [dm3] 2R_12286951_SNP [dm6]	C	T	2.108e^-4	0.437	INTRON CG42700
3R	2620613	3R_2620613_SNP [dm3] 3R_6794891_SNP [dm6]	C	A	2.112e^-4	0.437	INTRON Dfd
3R	2706180	3R_2706180_SNP [dm3] 3R_6880458_SNP [dm6]	T	G	2.112e^-4	0.437	INTRON CR44931	regulatory region FlyBase REDfly_CRMs
3R	11092500	3R_11092500_SNP [dm3] 3R_15266778_SNP [dm6]	T	A	2.117e^-4	0.437	NON_SYNONYMOUS_CODING CG14864 DOWNSTREAM Oscp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4926419	2L_4926419_SNP [dm3] 2L_4926419_SNP [dm6]	C	T	2.119e^-4	0.437	INTRON hoe1
3R	5685694	3R_5685694_SNP [dm3] 3R_9859972_SNP [dm6]	A	T	2.119e^-4	0.437	INTRON Teh1
3L	13133680	3L_13133680_SNP [dm3] 3L_13140580_SNP [dm6]	A	G	2.124e^-4	0.437	INTERGENIC
3L	518102	3L_518102_SNP [dm3] 3L_518102_SNP [dm6]	C	T	2.133e^-4	0.437	INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6021213	2L_6021213_SNP [dm3] 2L_6021213_SNP [dm6]	A	C	2.135e^-4	0.437	INTRON CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6021246	2L_6021246_SNP [dm3] 2L_6021246_SNP [dm6]	A	G	2.135e^-4	0.437	SYNONYMOUS_CODING CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17834601	2R_17834601_SNP [dm3] 2R_21947096_SNP [dm6]	G	A	2.137e^-4	0.437	DOWNSTREAM Fili INTERGENIC
2R	8722699	2R_8722699_DEL [dm3] 2R_12835194_DEL [dm6]	AA	A	2.140e^-4	0.437	INTERGENIC
3L	1940296	3L_1940296_SNP [dm3] 3L_1940296_SNP [dm6]	T	C	2.143e^-4	0.437	UPSTREAM Mfap1 EXON CR44536
2L	17409232	2L_17409232_SNP [dm3] 2L_17409232_SNP [dm6]	C	T	2.150e^-4	0.437	SYNONYMOUS_CODING CLIP-190 DOWNSTREAM Rpb11
2R	16498931	2R_16498931_SNP [dm3] 2R_20611426_SNP [dm6]	C	T	2.150e^-4	0.437	INTRON Hil	TF binding site BDTNP1_TFBS_dl
3L	14546441	3L_14546441_SNP [dm3] 3L_14553341_SNP [dm6]	C	A	2.150e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3L	17622662	3L_17622662_SNP [dm3] 3L_17629562_SNP [dm6]	A	T	2.150e^-4	0.437	INTRON CG7510
3L	17624527	3L_17624527_SNP [dm3] 3L_17631427_SNP [dm6]	G	T	2.150e^-4	0.437	DOWNSTREAM CG7510 EXON CR44566
3L	17624822	3L_17624822_SNP [dm3] 3L_17631722_SNP [dm6]	G	C	2.150e^-4	0.437	DOWNSTREAM CG7510 EXON CR44566
3L	17626163	3L_17626163_SNP [dm3] 3L_17633063_SNP [dm6]	G	A	2.150e^-4	0.437	UPSTREAM CG7497 DOWNSTREAM CR44566 EXON CR44567
3L	17626166	3L_17626166_SNP [dm3] 3L_17633066_SNP [dm6]	G	A	2.150e^-4	0.437	UPSTREAM CG7497 DOWNSTREAM CR44566 EXON CR44567
3L	17626186	3L_17626186_SNP [dm3] 3L_17633086_SNP [dm6]	A	G	2.150e^-4	0.437	UPSTREAM CG7497 DOWNSTREAM CR44566 EXON CR44567
3L	17626495	3L_17626495_SNP [dm3] 3L_17633395_SNP [dm6]	G	T	2.150e^-4	0.437	UPSTREAM CG7497 & 1 other INTERGENIC
3L	8707390	3L_8707390_SNP [dm3] 3L_8714290_SNP [dm6]	C	A	2.150e^-4	0.437	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	17103686	3R_17103686_SNP [dm3] 3R_21277964_SNP [dm6]	T	C	2.150e^-4	0.437	UTR_3_PRIME SIFaR
3R	6687830	3R_6687830_SNP [dm3] 3R_10862108_SNP [dm6]	A	C	2.150e^-4	0.437	INTRON CG6574	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	8088520	3R_8088520_SNP [dm3] 3R_12262798_SNP [dm6]	G	A	2.150e^-4	0.437	UTR_3_PRIME CG44037 INTRON svp
3R	8111141	3R_8111141_SNP [dm3] 3R_12285419_SNP [dm6]	T	A	2.150e^-4	0.437	INTRON svp
2R	20470288	2R_20470288_SNP [dm3] 2R_24582765_SNP [dm6]	A	G	2.163e^-4	0.437	INTRON pio	TF binding site BDTNP1_TFBS_da
2R	16429137	2R_16429137_SNP [dm3] 2R_20541632_SNP [dm6]	A	C	2.164e^-4	0.437	UPSTREAM CR44652 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1211062	2L_1211062_SNP [dm3] 2L_1211062_SNP [dm6]	A	G	2.165e^-4	0.437	INTERGENIC
3R	26677367	3R_26677367_SNP [dm3] 3R_30851645_SNP [dm6]	A	T	2.166e^-4	0.437	UPSTREAM tll INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	14494446	3L_14494446_SNP [dm3] 3L_14501346_SNP [dm6]	C	A	2.166e^-4	0.437	INTRON bbg	TF binding site BDTNP1_TFBS_prd
3R	11615285	3R_11615285_DEL [dm3] 3R_15789563_DEL [dm6]	GATATGAG	G	2.166e^-4	0.437	UTR_3_PRIME c_3_G DOWNSTREAM CG9589
3R	9892692	3R_9892692_SNP [dm3] 3R_14066970_SNP [dm6]	G	A	2.170e^-4	0.437	NON_SYNONYMOUS_CODING foxo
3R	14699478	3R_14699478_SNP [dm3] 3R_18873756_SNP [dm6]	G	A	2.177e^-4	0.437	INTERGENIC
3R	14699485	3R_14699485_MNP [dm3] 3R_18873763_MNP [dm6]	GCG	AGT	2.177e^-4	0.437	INTERGENIC
2R	9727587	2R_9727587_SNP [dm3] 2R_13840082_SNP [dm6]	C	G	2.184e^-4	0.437	NON_SYNONYMOUS_CODING CG6357 DOWNSTREAM CG6347	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	8151943	2R_8151943_SNP [dm3] 2R_12264438_SNP [dm6]	G	A	2.185e^-4	0.437	UPSTREAM Cam INTRON Cam
2R	8152216	2R_8152216_SNP [dm3] 2R_12264711_SNP [dm6]	A	G	2.185e^-4	0.437	INTRON Cam
3R	6996894	3R_6996894_SNP [dm3] 3R_11171172_SNP [dm6]	G	T	2.194e^-4	0.437	SYNONYMOUS_CODING Ugt35a UPSTREAM Ugt35b
3R	9850369	3R_9850369_SNP [dm3] 3R_14024647_SNP [dm6]	A	G	2.198e^-4	0.437	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10936035	3R_10936035_SNP [dm3] 3R_15110313_SNP [dm6]	G	T	2.206e^-4	0.437	INTRON CG42788	TF binding site BDTNP1_TFBS_twi
2L	15301275	2L_15301275_SNP [dm3] 2L_15301275_SNP [dm6]	A	T	2.207e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	1589982	2R_1589982_SNP [dm3] 2R_5702477_SNP [dm6]	A	T	2.217e^-4	0.437	UPSTREAM vlc INTRON vlc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8145855	2R_8145855_SNP [dm3] 2R_12258350_SNP [dm6]	C	T	2.218e^-4	0.437	SYNONYMOUS_CODING Vha36-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	20338043	2R_20338043_SNP [dm3] 2R_24450520_SNP [dm6]	G	A	2.221e^-4	0.437	DOWNSTREAM CG4563 INTERGENIC
2R	20341831	2R_20341831_SNP [dm3] 2R_24454308_SNP [dm6]	C	A	2.221e^-4	0.437	UPSTREAM CG13579 INTERGENIC
3R	6652867	3R_6652867_SNP [dm3] 3R_10827145_SNP [dm6]	G	A	2.221e^-4	0.437	UTR_5_PRIME Cad86C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15090500	2L_15090500_SNP [dm3] 2L_15090500_SNP [dm6]	T	A	2.224e^-4	0.437	INTRON CG15270
2R	16988288	2R_16988288_SNP [dm3] 2R_21100783_SNP [dm6]	A	G	2.224e^-4	0.437	SYNONYMOUS_CODING CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
2R	16988306	2R_16988306_SNP [dm3] 2R_21100801_SNP [dm6]	T	C	2.224e^-4	0.437	SYNONYMOUS_CODING CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
2L	7295741	2L_7295741_SNP [dm3] 2L_7295741_SNP [dm6]	C	T	2.239e^-4	0.437	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7543537	3L_7543537_SNP [dm3] 3L_7550437_SNP [dm6]	A	T	2.242e^-4	0.437	INTERGENIC
3L	14169041	3L_14169041_SNP [dm3] 3L_14175941_SNP [dm6]	A	C	2.243e^-4	0.437	UTR_3_PRIME D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_h
2R	8145977	2R_8145977_SNP [dm3] 2R_12258472_SNP [dm6]	G	A	2.244e^-4	0.437	NON_SYNONYMOUS_CODING Vha36-2 UPSTREAM Cam & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7634880	2L_7634880_SNP [dm3] 2L_7634880_SNP [dm6]	C	A	2.257e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4378899	3L_4378899_SNP [dm3] 3L_4378899_SNP [dm6]	T	A	2.260e^-4	0.437	UPSTREAM CR44360 INTRON DopEcR
2L	10542866	2L_10542866_MNP [dm3] 2L_10542866_MNP [dm6]	GAT	CTG	2.262e^-4	0.437	EXON CR44618	TF binding site mE1_TFBS_cad
2L	10542897	2L_10542897_SNP [dm3] 2L_10542897_SNP [dm6]	T	A	2.262e^-4	0.437	EXON CR44618	TF binding site mE1_TFBS_cad
3R	3392633	3R_3392633_SNP [dm3] 3R_7566911_SNP [dm6]	C	A	2.263e^-4	0.437	INTERGENIC
3R	23263683	3R_23263683_SNP [dm3] 3R_27437961_SNP [dm6]	C	G	2.270e^-4	0.437	UPSTREAM side DOWNSTREAM CG44290 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2717632	3R_2717632_INS [dm3] 3R_6891910_INS [dm6]	G	GAGG	2.275e^-4	0.437	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2L	15331949	2L_15331949_SNP [dm3] 2L_15331949_SNP [dm6]	T	C	2.278e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15332090	2L_15332090_SNP [dm3] 2L_15332090_SNP [dm6]	T	G	2.278e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	15332093	2L_15332093_DEL [dm3] 2L_15332093_DEL [dm6]	TGTTATTAT	T	2.278e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	15332183	2L_15332183_SNP [dm3] 2L_15332183_SNP [dm6]	T	G	2.278e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	15332208	2L_15332208_DEL [dm3] 2L_15332208_DEL [dm6]	CCTGAGAAAGCCAAAATTTC...	C	2.278e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	15332234	2L_15332234_DEL [dm3] 2L_15332234_DEL [dm6]	AAAT	A	2.278e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	15332890	2L_15332890_SNP [dm3] 2L_15332890_SNP [dm6]	C	G	2.278e^-4	0.437	UPSTREAM esg INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	15333011	2L_15333011_SNP [dm3] 2L_15333011_SNP [dm6]	A	G	2.278e^-4	0.437	UPSTREAM esg INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Kr mE1_TFBS_Trl
2L	15333013	2L_15333013_SNP [dm3] 2L_15333013_SNP [dm6]	T	A	2.278e^-4	0.437	UPSTREAM esg INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Kr mE1_TFBS_Trl
2L	15333046	2L_15333046_SNP [dm3] 2L_15333046_SNP [dm6]	G	A	2.278e^-4	0.437	UPSTREAM esg INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Kr mE1_TFBS_Trl
2L	15333436	2L_15333436_SNP [dm3] 2L_15333436_SNP [dm6]	T	G	2.278e^-4	0.437	UPSTREAM esg INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2L	15335059	2L_15335059_SNP [dm3] 2L_15335059_SNP [dm6]	C	T	2.278e^-4	0.437	SYNONYMOUS_CODING esg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
2L	13806484	2L_13806484_SNP [dm3] 2L_13806484_SNP [dm6]	C	T	2.280e^-4	0.437	INTRON CAH1
2L	15509869	2L_15509869_SNP [dm3] 2L_15509869_SNP [dm6]	G	T	2.280e^-4	0.437	INTERGENIC
2L	17299117	2L_17299117_SNP [dm3] 2L_17299117_SNP [dm6]	T	C	2.280e^-4	0.437	INTERGENIC
2L	17315218	2L_17315218_SNP [dm3] 2L_17315218_SNP [dm6]	T	C	2.280e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17315237	2L_17315237_SNP [dm3] 2L_17315237_SNP [dm6]	A	T	2.280e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17397527	2L_17397527_SNP [dm3] 2L_17397527_SNP [dm6]	A	G	2.280e^-4	0.437	INTRON CLIP-190
2L	3949694	2L_3949694_SNP [dm3] 2L_3949694_SNP [dm6]	T	A	2.280e^-4	0.437	INTRON fred
2L	4238951	2L_4238951_SNP [dm3] 2L_4238951_SNP [dm6]	C	T	2.280e^-4	0.437	INTERGENIC
2L	5163521	2L_5163521_SNP [dm3] 2L_5163521_SNP [dm6]	A	T	2.280e^-4	0.437	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	543997	2L_543997_SNP [dm3] 2L_543997_SNP [dm6]	T	C	2.280e^-4	0.437	SYNONYMOUS_CODING Spp DOWNSTREAM Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	544015	2L_544015_SNP [dm3] 2L_544015_SNP [dm6]	C	G	2.280e^-4	0.437	SYNONYMOUS_CODING Spp DOWNSTREAM Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	544021	2L_544021_SNP [dm3] 2L_544021_SNP [dm6]	A	G	2.280e^-4	0.437	SYNONYMOUS_CODING Spp DOWNSTREAM Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5814034	2L_5814034_SNP [dm3] 2L_5814034_SNP [dm6]	T	C	2.280e^-4	0.437	INTERGENIC
2L	5815459	2L_5815459_SNP [dm3] 2L_5815459_SNP [dm6]	T	C	2.280e^-4	0.437	INTERGENIC
2L	6103594	2L_6103594_SNP [dm3] 2L_6103594_SNP [dm6]	C	T	2.280e^-4	0.437	INTRON stai
2R	11792538	2R_11792538_SNP [dm3] 2R_15905033_SNP [dm6]	G	C	2.280e^-4	0.437	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	12272215	2R_12272215_SNP [dm3] 2R_16384710_SNP [dm6]	C	T	2.280e^-4	0.437	UTR_3_PRIME CG43187
2R	1577100	2R_1577100_SNP [dm3] 2R_5689595_SNP [dm6]	G	C	2.280e^-4	0.437	INTRON scaf
2R	1977434	2R_1977434_SNP [dm3] 2R_6089929_SNP [dm6]	G	A	2.280e^-4	0.437	UTR_3_PRIME EcR DOWNSTREAM EcR	TF binding site mE1_TFBS_zfh1
2R	5792059	2R_5792059_SNP [dm3] 2R_9904554_SNP [dm6]	G	T	2.280e^-4	0.437	INTERGENIC
2R	6445527	2R_6445527_SNP [dm3] 2R_10558022_SNP [dm6]	C	T	2.280e^-4	0.437	UTR_5_PRIME psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6831152	2R_6831152_SNP [dm3] 2R_10943647_SNP [dm6]	C	A	2.280e^-4	0.437	INTERGENIC
2R	7838829	2R_7838829_SNP [dm3] 2R_11951324_SNP [dm6]	T	A	2.280e^-4	0.437	INTRON CG13188
2R	8812433	2R_8812433_SNP [dm3] 2R_12924928_SNP [dm6]	A	T	2.280e^-4	0.437	DOWNSTREAM CG13319 INTRON sug	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9215825	2R_9215825_INS [dm3] 2R_13328320_INS [dm6]	A	AGTAGCA	2.280e^-4	0.437	INTERGENIC
3L	12938444	3L_12938444_SNP [dm3] 3L_12945344_SNP [dm6]	A	G	2.280e^-4	0.437	INTERGENIC
3L	13873234	3L_13873234_SNP [dm3] 3L_13880134_SNP [dm6]	G	A	2.280e^-4	0.437	INTRON dysc & 1 other
3L	13873420	3L_13873420_SNP [dm3] 3L_13880320_SNP [dm6]	T	G	2.280e^-4	0.437	INTRON dysc & 1 other
3L	14551078	3L_14551078_SNP [dm3] 3L_14557978_SNP [dm6]	C	T	2.280e^-4	0.437	INTERGENIC
3L	14851628	3L_14851628_SNP [dm3] 3L_14858528_SNP [dm6]	A	G	2.280e^-4	0.437	INTRON CG17839
3L	14851658	3L_14851658_INS [dm3] 3L_14858558_INS [dm6]	A	AC	2.280e^-4	0.437	INTRON CG17839
3L	15594096	3L_15594096_SNP [dm3] 3L_15600996_SNP [dm6]	A	C	2.280e^-4	0.437	INTRON RhoGAP71E
3L	15594125	3L_15594125_SNP [dm3] 3L_15601025_SNP [dm6]	G	T	2.280e^-4	0.437	INTRON RhoGAP71E
3L	17579196	3L_17579196_SNP [dm3] 3L_17586096_SNP [dm6]	A	G	2.280e^-4	0.437	INTRON Eip74EF	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	17592194	3L_17592194_SNP [dm3] 3L_17599094_SNP [dm6]	A	T	2.280e^-4	0.437	UTR_5_PRIME Eip74EF
3L	17595608	3L_17595608_SNP [dm3] 3L_17602508_SNP [dm6]	A	G	2.280e^-4	0.437	INTRON Eip74EF
3L	17601907	3L_17601907_SNP [dm3] 3L_17608807_SNP [dm6]	G	A	2.280e^-4	0.437	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17603831	3L_17603831_SNP [dm3] 3L_17610731_SNP [dm6]	T	C	2.280e^-4	0.437	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	17603841	3L_17603841_SNP [dm3] 3L_17610741_SNP [dm6]	G	A	2.280e^-4	0.437	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	17603931	3L_17603931_SNP [dm3] 3L_17610831_SNP [dm6]	A	T	2.280e^-4	0.437	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	17605561	3L_17605561_SNP [dm3] 3L_17612461_SNP [dm6]	C	T	2.280e^-4	0.437	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	17606590	3L_17606590_SNP [dm3] 3L_17613490_SNP [dm6]	C	A	2.280e^-4	0.437	INTRON Eip74EF	TF binding site BDTNP1_TFBS_z
3L	17609637	3L_17609637_SNP [dm3] 3L_17616537_SNP [dm6]	C	T	2.280e^-4	0.437	INTRON Eip74EF
3L	17610428	3L_17610428_SNP [dm3] 3L_17617328_SNP [dm6]	C	G	2.280e^-4	0.437	INTRON Eip74EF
3L	17612777	3L_17612777_SNP [dm3] 3L_17619677_SNP [dm6]	G	A	2.280e^-4	0.437	UPSTREAM Eip74EF DOWNSTREAM CG6259 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	17612866	3L_17612866_SNP [dm3] 3L_17619766_SNP [dm6]	G	A	2.280e^-4	0.437	UPSTREAM Eip74EF DOWNSTREAM CG6259 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb mE1_TFBS_Trl
3L	17613267	3L_17613267_SNP [dm3] 3L_17620167_SNP [dm6]	G	C	2.280e^-4	0.437	UTR_3_PRIME CG6259 UPSTREAM Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	17614712	3L_17614712_SNP [dm3] 3L_17621612_SNP [dm6]	T	A	2.280e^-4	0.437	UTR_5_PRIME CG6259 UPSTREAM CG7510 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	17615276	3L_17615276_DEL [dm3] 3L_17622176_DEL [dm6]	CC	T	2.280e^-4	0.437	UTR_5_PRIME CG7510 UPSTREAM CG6259	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	17617482	3L_17617482_DEL [dm3] 3L_17624382_DEL [dm6]	TTTAGCTCTTAGACTTATCT...	T	2.280e^-4	0.437	INTRON CG7510
3L	17620319	3L_17620319_SNP [dm3] 3L_17627219_SNP [dm6]	C	T	2.280e^-4	0.437	SYNONYMOUS_CODING CG7510 UPSTREAM scaRNA:MeU4-A65
3L	17620603	3L_17620603_SNP [dm3] 3L_17627503_SNP [dm6]	G	T	2.280e^-4	0.437	NON_SYNONYMOUS_CODING CG7510 UPSTREAM scaRNA:MeU4-A65
3L	17620710	3L_17620710_SNP [dm3] 3L_17627610_SNP [dm6]	T	C	2.280e^-4	0.437	SPLICE_SITE_REGION CG7510 UPSTREAM scaRNA:MeU4-A65 INTRON CG7510
3L	17622585	3L_17622585_SNP [dm3] 3L_17629485_SNP [dm6]	G	A	2.280e^-4	0.437	INTRON CG7510
3L	17623401	3L_17623401_INS [dm3] 3L_17630301_INS [dm6]	GT	AATATA	2.280e^-4	0.437	UTR_3_PRIME CG7510
3L	17623421	3L_17623421_DEL [dm3] 3L_17630321_DEL [dm6]	AACTT	A	2.280e^-4	0.437	UTR_3_PRIME CG7510
3L	17624067	3L_17624067_SNP [dm3] 3L_17630967_SNP [dm6]	G	A	2.280e^-4	0.437	UTR_3_PRIME CG7510 UPSTREAM CR44566 DOWNSTREAM CG7510
3L	17627104	3L_17627104_SNP [dm3] 3L_17634004_SNP [dm6]	C	T	2.280e^-4	0.437	UPSTREAM CR44567 INTRON CG7497
3L	17627105	3L_17627105_SNP [dm3] 3L_17634005_SNP [dm6]	T	G	2.280e^-4	0.437	UPSTREAM CR44567 INTRON CG7497
3L	17627107	3L_17627107_SNP [dm3] 3L_17634007_SNP [dm6]	G	T	2.280e^-4	0.437	UPSTREAM CR44567 INTRON CG7497
3L	17627108	3L_17627108_SNP [dm3] 3L_17634008_SNP [dm6]	C	T	2.280e^-4	0.437	UPSTREAM CR44567 INTRON CG7497
3L	17627163	3L_17627163_SNP [dm3] 3L_17634063_SNP [dm6]	C	T	2.280e^-4	0.437	UPSTREAM CR44567 INTRON CG7497
3L	17627195	3L_17627195_SNP [dm3] 3L_17634095_SNP [dm6]	A	G	2.280e^-4	0.437	UPSTREAM CR44567 INTRON CG7497
3L	17627199	3L_17627199_SNP [dm3] 3L_17634099_SNP [dm6]	T	C	2.280e^-4	0.437	UPSTREAM CR44567 INTRON CG7497
3L	17627242	3L_17627242_SNP [dm3] 3L_17634142_SNP [dm6]	A	G	2.280e^-4	0.437	UPSTREAM CR44567 INTRON CG7497
3L	17655893	3L_17655893_SNP [dm3] 3L_17662793_SNP [dm6]	C	T	2.280e^-4	0.437	SYNONYMOUS_CODING Crtc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17660494	3L_17660494_SNP [dm3] 3L_17667394_SNP [dm6]	A	T	2.280e^-4	0.437	INTRON Crtc	TF binding site BDTNP1_TFBS_dl
3L	8707497	3L_8707497_DEL [dm3] 3L_8714397_DEL [dm6]	CCATA	TGTG	2.280e^-4	0.437	INTERGENIC	regulatory region REDfly_CRMs
3R	12855693	3R_12855693_SNP [dm3] 3R_17029971_SNP [dm6]	A	G	2.280e^-4	0.437	SYNONYMOUS_CODING CG5225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	12902448	3R_12902448_SNP [dm3] 3R_17076726_SNP [dm6]	G	T	2.280e^-4	0.437	NON_SYNONYMOUS_CODING Keap1
3R	14902590	3R_14902590_SNP [dm3] 3R_19076868_SNP [dm6]	G	A	2.280e^-4	0.437	INTRON cdi
3R	17104760	3R_17104760_SNP [dm3] 3R_21279038_SNP [dm6]	C	T	2.280e^-4	0.437	UTR_3_PRIME SIFaR	TF binding site mE1_TFBS_cad
3R	17105154	3R_17105154_SNP [dm3] 3R_21279432_SNP [dm6]	A	G	2.280e^-4	0.437	SYNONYMOUS_CODING SIFaR	TF binding site mE1_TFBS_cad
3R	17105163	3R_17105163_SNP [dm3] 3R_21279441_SNP [dm6]	A	G	2.280e^-4	0.437	SYNONYMOUS_CODING SIFaR	TF binding site mE1_TFBS_cad
3R	17867436	3R_17867436_SNP [dm3] 3R_22041714_SNP [dm6]	C	T	2.280e^-4	0.437	UPSTREAM how INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	21391134	3R_21391134_SNP [dm3] 3R_25565412_SNP [dm6]	C	A	2.280e^-4	0.437	INTRON msi
3R	21391180	3R_21391180_DEL [dm3] 3R_25565458_DEL [dm6]	TTG	CA	2.280e^-4	0.437	INTRON msi
3R	21391190	3R_21391190_SNP [dm3] 3R_25565468_SNP [dm6]	C	T	2.280e^-4	0.437	INTRON msi
3R	24035562	3R_24035562_SNP [dm3] 3R_28209840_SNP [dm6]	G	T	2.280e^-4	0.437	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25721933	3R_25721933_SNP [dm3] 3R_29896211_SNP [dm6]	T	C	2.280e^-4	0.437	INTRON CG31038	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25722127	3R_25722127_SNP [dm3] 3R_29896405_SNP [dm6]	C	T	2.280e^-4	0.437	INTRON CG31038	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26266030	3R_26266030_SNP [dm3] 3R_30440308_SNP [dm6]	T	C	2.280e^-4	0.437	INTRON CG15537
3R	26566589	3R_26566589_SNP [dm3] 3R_30740867_SNP [dm6]	C	T	2.280e^-4	0.437	INTERGENIC
3R	6651118	3R_6651118_SNP [dm3] 3R_10825396_SNP [dm6]	A	C	2.280e^-4	0.437	INTERGENIC
3R	6660452	3R_6660452_SNP [dm3] 3R_10834730_SNP [dm6]	A	T	2.280e^-4	0.437	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6661676	3R_6661676_SNP [dm3] 3R_10835954_SNP [dm6]	G	T	2.280e^-4	0.437	INTRON Cad86C
3R	6664729	3R_6664729_SNP [dm3] 3R_10839007_SNP [dm6]	T	G	2.280e^-4	0.437	INTRON Cad86C
3R	6672391	3R_6672391_SNP [dm3] 3R_10846669_SNP [dm6]	A	T	2.280e^-4	0.437	NON_SYNONYMOUS_CODING Cad86C UTR_3_PRIME Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6676535	3R_6676535_SNP [dm3] 3R_10850813_SNP [dm6]	G	A	2.280e^-4	0.437	INTRON CG42394	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	6677178	3R_6677178_SNP [dm3] 3R_10851456_SNP [dm6]	T	G	2.280e^-4	0.437	NON_SYNONYMOUS_CODING CG42394	TF binding site BDTNP1_TFBS_dl
3R	6678823	3R_6678823_SNP [dm3] 3R_10853101_SNP [dm6]	G	T	2.280e^-4	0.437	SYNONYMOUS_CODING CG4565 DOWNSTREAM CG6567	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	6682323	3R_6682323_SNP [dm3] 3R_10856601_SNP [dm6]	G	A	2.280e^-4	0.437	UPSTREAM CG4570 DOWNSTREAM CG4511 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6684439	3R_6684439_SNP [dm3] 3R_10858717_SNP [dm6]	A	T	2.280e^-4	0.437	SYNONYMOUS_CODING CG14694 DOWNSTREAM CG4570	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	6685499	3R_6685499_SNP [dm3] 3R_10859777_SNP [dm6]	G	A	2.280e^-4	0.437	SYNONYMOUS_CODING CG14694 DOWNSTREAM CG6574	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6689173	3R_6689173_INS [dm3] 3R_10863451_INS [dm6]	T	TT	2.280e^-4	0.437	UTR_3_PRIME SelR UPSTREAM CG6574 DOWNSTREAM SelR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	6690825	3R_6690825_SNP [dm3] 3R_10865103_SNP [dm6]	A	T	2.280e^-4	0.437	UTR_3_PRIME SelR INTRON SelR
3R	7981421	3R_7981421_SNP [dm3] 3R_12155699_SNP [dm6]	G	A	2.280e^-4	0.437	INTRON dpr15
X	13982660	X_13982660_SNP [dm3] X_14088627_SNP [dm6]	A	G	2.280e^-4	0.437	INTERGENIC
X	21903919	X_21903919_SNP [dm3] X_22502083_SNP [dm6]	G	A	2.280e^-4	0.437	NON_SYNONYMOUS_CODING l_1_G0196 INTRON l_1_G0196	TF binding site mE1_TFBS_sens
X	3023232	X_3023232_SNP [dm3] X_3129199_SNP [dm6]	C	G	2.280e^-4	0.437	INTRON kirre
X	3953964	X_3953964_SNP [dm3] X_4059931_SNP [dm6]	G	C	2.280e^-4	0.437	INTERGENIC
2L	15332122	2L_15332122_SNP [dm3] 2L_15332122_SNP [dm6]	C	T	2.283e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	10284170	X_10284170_SNP [dm3] X_10390137_SNP [dm6]	G	A	2.291e^-4	0.437	INTRON flw
2L	6116950	2L_6116950_SNP [dm3] 2L_6116950_SNP [dm6]	A	C	2.292e^-4	0.437	INTRON stai	TF binding site mE1_TFBS_sbb
2L	5701568	2L_5701568_INS [dm3] 2L_5701568_INS [dm6]	C	CG	2.296e^-4	0.438	INTERGENIC
X	2995375	X_2995375_SNP [dm3] X_3101342_SNP [dm6]	T	A	2.297e^-4	0.438	INTRON kirre
2L	16968111	2L_16968111_DEL [dm3] 2L_16968111_DEL [dm6]	TGCCAT	G	2.302e^-4	0.438	INTERGENIC
3L	12976374	3L_12976374_SNP [dm3] 3L_12983274_SNP [dm6]	C	G	2.304e^-4	0.438	INTERGENIC
3L	17455863	3L_17455863_SNP [dm3] 3L_17462763_SNP [dm6]	G	A	2.304e^-4	0.438	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4378890	3L_4378890_SNP [dm3] 3L_4378890_SNP [dm6]	C	T	2.317e^-4	0.439	UPSTREAM CR44360 INTRON DopEcR
2R	6442037	2R_6442037_SNP [dm3] 2R_10554532_SNP [dm6]	T	G	2.318e^-4	0.439	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	11650824	2R_11650824_SNP [dm3] 2R_15763319_SNP [dm6]	T	A	2.323e^-4	0.44	INTRON Zasp52
2L	3761712	2L_3761712_SNP [dm3] 2L_3761712_SNP [dm6]	T	C	2.340e^-4	0.441	SYNONYMOUS_CODING CG43707	TF binding site mE1_TFBS_chinmo
2R	12148321	2R_12148321_INS [dm3] 2R_16260816_INS [dm6]	A	AT	2.342e^-4	0.441	INTERGENIC
3L	14468558	3L_14468558_SNP [dm3] 3L_14475458_SNP [dm6]	A	G	2.342e^-4	0.441	INTRON bbg
3R	6653999	3R_6653999_SNP [dm3] 3R_10828277_SNP [dm6]	A	G	2.345e^-4	0.441	INTRON Cad86C	TF binding site BDTNP1_TFBS_dl
2R	8166778	2R_8166778_SNP [dm3] 2R_12279273_SNP [dm6]	A	C	2.357e^-4	0.441	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
3R	19263693	3R_19263693_SNP [dm3] 3R_23437971_SNP [dm6]	G	T	2.359e^-4	0.441	INTRON CG4374
3L	9989014	3L_9989014_SNP [dm3] 3L_9995914_SNP [dm6]	C	T	2.365e^-4	0.441	INTRON dpr6
3R	24412216	3R_24412216_SNP [dm3] 3R_28586494_SNP [dm6]	C	A	2.370e^-4	0.441	EXON MRE23	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
3R	24780824	3R_24780824_SNP [dm3] 3R_28955102_SNP [dm6]	C	T	2.370e^-4	0.441	INTRON CG14521
3R	2758250	3R_2758250_SNP [dm3] 3R_6932528_SNP [dm6]	A	C	2.372e^-4	0.441	UTR_5_PRIME Antp INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	2615454	2R_2615454_SNP [dm3] 2R_6727949_SNP [dm6]	T	C	2.374e^-4	0.441	UTR_3_PRIME l_2_01289 INTRON l_2_01289
2L	5463750	2L_5463750_SNP [dm3] 2L_5463750_SNP [dm6]	C	A	2.378e^-4	0.441	INTRON mid
3L	17458704	3L_17458704_SNP [dm3] 3L_17465604_SNP [dm6]	G	A	2.381e^-4	0.441	UPSTREAM CG7603 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25808868	3R_25808868_SNP [dm3] 3R_29983146_SNP [dm6]	T	G	2.381e^-4	0.441	UPSTREAM CG7896 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12994951	2R_12994951_SNP [dm3] 2R_17107446_SNP [dm6]	A	G	2.382e^-4	0.441	UTR_3_PRIME CG30456	TF binding site mE1_TFBS_cad
2R	12995036	2R_12995036_SNP [dm3] 2R_17107531_SNP [dm6]	T	A	2.382e^-4	0.441	UTR_3_PRIME CG30456
2R	12995045	2R_12995045_SNP [dm3] 2R_17107540_SNP [dm6]	T	C	2.382e^-4	0.441	UTR_3_PRIME CG30456
3L	15592148	3L_15592148_SNP [dm3] 3L_15599048_SNP [dm6]	C	A	2.387e^-4	0.441	INTRON RhoGAP71E
3L	15592161	3L_15592161_SNP [dm3] 3L_15599061_SNP [dm6]	T	A	2.387e^-4	0.441	INTRON RhoGAP71E
3L	15592174	3L_15592174_SNP [dm3] 3L_15599074_SNP [dm6]	C	A	2.387e^-4	0.441	INTRON RhoGAP71E
3L	6537551	3L_6537551_SNP [dm3] 3L_6544451_SNP [dm6]	T	A	2.387e^-4	0.441	INTRON sfl
3L	6537552	3L_6537552_DEL [dm3] 3L_6544452_DEL [dm6]	TTC	T	2.387e^-4	0.441	INTRON sfl
3L	2273530	3L_2273530_SNP [dm3] 3L_2273530_SNP [dm6]	G	A	2.394e^-4	0.442	UPSTREAM tRNA:CR32303 & 1 other INTERGENIC
3L	18548045	3L_18548045_DEL [dm3] 3L_18554945_DEL [dm6]	TTTGGGGCCAGTTGGAG...	T	2.411e^-4	0.445	INTERGENIC
2R	20341800	2R_20341800_SNP [dm3] 2R_24454277_SNP [dm6]	C	A	2.415e^-4	0.445	INTERGENIC
3L	17458710	3L_17458710_SNP [dm3] 3L_17465610_SNP [dm6]	A	G	2.422e^-4	0.446	UPSTREAM CG7603 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17458713	3L_17458713_SNP [dm3] 3L_17465613_SNP [dm6]	A	G	2.422e^-4	0.446	UPSTREAM CG7603 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21887979	X_21887979_SNP [dm3] X_22486143_SNP [dm6]	C	A	2.433e^-4	0.447	DOWNSTREAM Cp110 INTRON Cp110
3L	20785060	3L_20785060_SNP [dm3] 3L_20791960_SNP [dm6]	A	G	2.446e^-4	0.449	INTRON Six4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11854118	2R_11854118_SNP [dm3] 2R_15966613_SNP [dm6]	A	G	2.452e^-4	0.449	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10999671	3R_10999671_SNP [dm3] 3R_15173949_SNP [dm6]	A	G	2.453e^-4	0.449	UTR_3_PRIME Mf INTRON Mf & 1 other
3R	2679714	3R_2679714_SNP [dm3] 3R_6853992_SNP [dm6]	C	A	2.458e^-4	0.449	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	17936763	3R_17936763_SNP [dm3] 3R_22111041_SNP [dm6]	C	T	2.459e^-4	0.449	UPSTREAM CG5778 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	17697108	3R_17697108_SNP [dm3] 3R_21871386_SNP [dm6]	G	T	2.459e^-4	0.449	UPSTREAM CG31431 INTRON CG31431	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11419384	3L_11419384_SNP [dm3] 3L_11426284_SNP [dm6]	C	T	2.492e^-4	0.455	SYNONYMOUS_CODING CG7560	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	4563828	2R_4563828_SNP [dm3] 2R_8676323_SNP [dm6]	T	A	2.495e^-4	0.455	UTR_5_PRIME Acsl UPSTREAM CG30354 INTRON Acsl
2R	9090563	2R_9090563_SNP [dm3] 2R_13203058_SNP [dm6]	G	T	2.504e^-4	0.456	NON_SYNONYMOUS_CODING lat UTR_3_PRIME CG34315 DOWNSTREAM Aats-val	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13029623	3L_13029623_SNP [dm3] 3L_13036523_SNP [dm6]	C	A	2.512e^-4	0.456	UPSTREAM SRm160 DOWNSTREAM CG17672 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	11529636	2R_11529636_MNP [dm3] 2R_15642131_MNP [dm6]	TAA	ATT	2.513e^-4	0.456	INTRON CG42524
2R	11529639	2R_11529639_DEL [dm3] 2R_15642134_DEL [dm6]	ACGTTGT	A	2.513e^-4	0.456	INTRON CG42524
3R	3544841	3R_3544841_SNP [dm3] 3R_7719119_SNP [dm6]	G	A	2.519e^-4	0.457	UPSTREAM CR44260 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18209202	3L_18209202_SNP [dm3] 3L_18216102_SNP [dm6]	A	T	2.523e^-4	0.457	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23085043	3R_23085043_SNP [dm3] 3R_27259321_SNP [dm6]	T	C	2.527e^-4	0.457	SYNONYMOUS_CODING woc UPSTREAM CR44049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19202987	2L_19202987_DEL [dm3] 2L_19202987_DEL [dm6]	GG	G	2.530e^-4	0.457	INTRON drl	regulatory region REDfly_CRMs
X	12801001	X_12801001_SNP [dm3] X_12906968_SNP [dm6]	G	A	2.533e^-4	0.457	UPSTREAM CG4404 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Ubx
2R	20168468	2R_20168468_INS [dm3] 2R_24280945_INS [dm6]	GA	CCCCTTCCCTCTTCC...	2.534e^-4	0.457	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18873395	2L_18873395_SNP [dm3] 2L_18873395_SNP [dm6]	G	A	2.539e^-4	0.457	INTRON tup	TF binding site BDTNP1_TFBS_dl
3R	6691066	3R_6691066_SNP [dm3] 3R_10865344_SNP [dm6]	G	A	2.545e^-4	0.458	UTR_3_PRIME SelR INTRON SelR
2L	22521993	2L_22521993_SNP [dm3] 2L_22629261_SNP [dm6]	G	T	2.549e^-4	0.458	INTRON CG40006
3R	18858959	3R_18858959_SNP [dm3] 3R_23033237_SNP [dm6]	G	C	2.554e^-4	0.459	DOWNSTREAM CG13833 INTERGENIC
2R	12150150	2R_12150150_SNP [dm3] 2R_16262645_SNP [dm6]	A	C	2.564e^-4	0.46	SYNONYMOUS_CODING fidipidine
2R	8132496	2R_8132496_SNP [dm3] 2R_12244991_SNP [dm6]	A	G	2.571e^-4	0.46	UPSTREAM CG43244 INTERGENIC
3L	18417211	3L_18417211_DEL [dm3] 3L_18424111_DEL [dm6]	GG	G	2.575e^-4	0.46	INTERGENIC
3L	19171584	3L_19171584_SNP [dm3] 3L_19178484_SNP [dm6]	G	T	2.585e^-4	0.46	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	9989163	3L_9989163_SNP [dm3] 3L_9996063_SNP [dm6]	T	G	2.589e^-4	0.46	INTRON dpr6
2R	10256455	2R_10256455_SNP [dm3] 2R_14368950_SNP [dm6]	C	T	2.601e^-4	0.46	SYNONYMOUS_CODING CG34443 UPSTREAM CG34444
2R	17879866	2R_17879866_SNP [dm3] 2R_21992361_SNP [dm6]	A	T	2.606e^-4	0.46	INTRON CG34370
X	14752150	X_14752150_SNP [dm3] X_14858117_SNP [dm6]	G	A	2.612e^-4	0.46	INTRON Flo2
3R	19427245	3R_19427245_SNP [dm3] 3R_23601523_SNP [dm6]	T	G	2.615e^-4	0.46	UPSTREAM tRNA:CR31143 DOWNSTREAM CG10184 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14557531	2R_14557531_SNP [dm3] 2R_18670026_SNP [dm6]	T	A	2.616e^-4	0.46	INTRON edl	TF binding site mE1_TFBS_sens
2R	14557533	2R_14557533_SNP [dm3] 2R_18670028_SNP [dm6]	A	T	2.616e^-4	0.46	INTRON edl	TF binding site mE1_TFBS_sens
2R	14557548	2R_14557548_SNP [dm3] 2R_18670043_SNP [dm6]	C	G	2.616e^-4	0.46	INTRON edl	TF binding site mE1_TFBS_sens
3R	11004602	3R_11004602_SNP [dm3] 3R_15178880_SNP [dm6]	T	G	2.617e^-4	0.46	INTRON Gyc88E & 1 other
3R	2629352	3R_2629352_INS [dm3] 3R_6803630_INS [dm6]	A	AA	2.619e^-4	0.46	INTERGENIC
3R	26679750	3R_26679750_SNP [dm3] 3R_30854028_SNP [dm6]	A	C	2.619e^-4	0.46	UTR_3_PRIME tll	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25336267	3R_25336267_SNP [dm3] 3R_29510545_SNP [dm6]	C	G	2.625e^-4	0.46	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8093583	3R_8093583_SNP [dm3] 3R_12267861_SNP [dm6]	A	G	2.625e^-4	0.46	UPSTREAM CR44039 INTRON svp

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.593e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1906 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	16294550	3R_16294550_SNP [dm3] 3R_20468828_SNP [dm6]	C	A	4.801e^-6	0.449	INTRON Gfrl
X	15819468	X_15819468_SNP [dm3] X_15925435_SNP [dm6]	A	G	5.102e^-6	0.449	DOWNSTREAM CG8916 INTRON Lcch3
3L	3517756	3L_3517756_SNP [dm3] 3L_3517756_SNP [dm6]	G	A	6.038e^-6	0.449	INTRON Eip63E
3L	4707959	3L_4707959_SNP [dm3] 3L_4707959_SNP [dm6]	G	A	6.978e^-6	0.449	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2573307	3R_2573307_SNP [dm3] 3R_6747585_SNP [dm6]	T	C	8.813e^-6	0.449	NON_SYNONYMOUS_CODING CG34297
2L	5876194	2L_5876194_SNP [dm3] 2L_5876194_SNP [dm6]	A	T	9.125e^-6	0.449	INTRON rau
3L	17093935	3L_17093935_SNP [dm3] 3L_17100835_SNP [dm6]	T	A	9.605e^-6	0.449	INTRON Rbp6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3517725	3L_3517725_SNP [dm3] 3L_3517725_SNP [dm6]	G	A	9.908e^-6	0.449	INTRON Eip63E	TF binding site BDTNP1_TFBS_twi
3R	16294542	3R_16294542_SNP [dm3] 3R_20468820_SNP [dm6]	G	A	1.095e^-5	0.449	INTRON Gfrl
3R	16294728	3R_16294728_SNP [dm3] 3R_20469006_SNP [dm6]	C	T	1.095e^-5	0.449	INTRON Gfrl
2L	3975210	2L_3975210_SNP [dm3] 2L_3975210_SNP [dm6]	G	A	1.187e^-5	0.449	INTRON fred
3L	9989163	3L_9989163_SNP [dm3] 3L_9996063_SNP [dm6]	T	G	1.241e^-5	0.449	INTRON dpr6
2R	11813744	2R_11813744_SNP [dm3] 2R_15926239_SNP [dm6]	C	T	1.248e^-5	0.449	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
3R	11000702	3R_11000702_DEL [dm3] 3R_15174980_DEL [dm6]	GTTTT	G	1.383e^-5	0.449	DOWNSTREAM Mf INTRON Mf & 1 other
3R	26092496	3R_26092496_SNP [dm3] 3R_30266774_SNP [dm6]	G	A	1.480e^-5	0.449	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	16989060	2R_16989060_SNP [dm3] 2R_21101555_SNP [dm6]	T	G	1.570e^-5	0.449	UPSTREAM ktub DOWNSTREAM CG34396 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	16989071	2R_16989071_SNP [dm3] 2R_21101566_SNP [dm6]	G	A	1.570e^-5	0.449	UPSTREAM ktub DOWNSTREAM CG34396 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2R	11813555	2R_11813555_SNP [dm3] 2R_15926050_SNP [dm6]	G	A	1.572e^-5	0.449	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	3228845	2L_3228845_SNP [dm3] 2L_3228845_SNP [dm6]	G	A	1.860e^-5	0.449	INTERGENIC
3R	2619106	3R_2619106_SNP [dm3] 3R_6793384_SNP [dm6]	G	A	1.912e^-5	0.449	INTRON Dfd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7591156	X_7591156_SNP [dm3] X_7697123_SNP [dm6]	A	G	1.962e^-5	0.449	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25654143	3R_25654143_SNP [dm3] 3R_29828421_SNP [dm6]	A	G	2.069e^-5	0.449	SYNONYMOUS_CODING Atg16
2R	7047668	2R_7047668_SNP [dm3] 2R_11160163_SNP [dm6]	T	A	2.224e^-5	0.449	UTR_5_PRIME CG13229 INTRON shn & 1 other
3R	2611524	3R_2611524_SNP [dm3] 3R_6785802_SNP [dm6]	A	T	2.343e^-5	0.449	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_inv
3R	9448476	3R_9448476_SNP [dm3] 3R_13622754_SNP [dm6]	T	A	2.354e^-5	0.449	INTERGENIC
3L	4082560	3L_4082560_SNP [dm3] 3L_4082560_SNP [dm6]	A	G	2.370e^-5	0.449	SYNONYMOUS_CODING Gad1
2R	10101096	2R_10101096_DEL [dm3] 2R_14213591_DEL [dm6]	ATTTT	A	2.406e^-5	0.449	INTERGENIC
3R	2670143	3R_2670143_SNP [dm3] 3R_6844421_SNP [dm6]	A	G	2.522e^-5	0.449	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1876286	3L_1876286_SNP [dm3] 3L_1876286_SNP [dm6]	C	G	2.590e^-5	0.449	UTR_5_PRIME dre4 DOWNSTREAM CG13937	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2R	17484170	2R_17484170_SNP [dm3] 2R_21596665_SNP [dm6]	A	C	2.591e^-5	0.449	INTERGENIC
3R	2614463	3R_2614463_INS [dm3] 3R_6788741_INS [dm6]	G	GG	2.621e^-5	0.449	INTERGENIC
3L	7225956	3L_7225956_SNP [dm3] 3L_7232856_SNP [dm6]	G	A	2.622e^-5	0.449	INTERGENIC
2R	5803271	2R_5803271_SNP [dm3] 2R_9915766_SNP [dm6]	G	A	2.655e^-5	0.449	UTR_3_PRIME Mef2 DOWNSTREAM Mef2
3L	13771574	3L_13771574_SNP [dm3] 3L_13778474_SNP [dm6]	A	G	2.674e^-5	0.449	INTRON bru-3
2L	3955280	2L_3955280_SNP [dm3] 2L_3955280_SNP [dm6]	G	A	2.702e^-5	0.449	INTRON fred
3R	2541848	3R_2541848_SNP [dm3] 3R_6716126_SNP [dm6]	A	G	2.702e^-5	0.449	INTRON pb	regulatory region REDfly_CRMs
3R	22251390	3R_22251390_SNP [dm3] 3R_26425668_SNP [dm6]	G	A	2.725e^-5	0.449	UPSTREAM CG6503 INTRON CR31084 & 1 other
3R	24424869	3R_24424869_SNP [dm3] 3R_28599147_SNP [dm6]	T	C	2.886e^-5	0.449	SYNONYMOUS_CODING Noa36 UPSTREAM Hrb98DE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	2629352	3R_2629352_INS [dm3] 3R_6803630_INS [dm6]	A	AA	2.967e^-5	0.449	INTERGENIC
3R	12133965	3R_12133965_SNP [dm3] 3R_16308243_SNP [dm6]	C	T	3.013e^-5	0.449	INTRON Zip89B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17357151	2R_17357151_SNP [dm3] 2R_21469646_SNP [dm6]	A	C	3.066e^-5	0.449	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25275934	3R_25275934_SNP [dm3] 3R_29450212_SNP [dm6]	A	T	3.110e^-5	0.449	INTRON Ptp99A
3L	18417211	3L_18417211_DEL [dm3] 3L_18424111_DEL [dm6]	GG	G	3.195e^-5	0.449	INTERGENIC
2L	19829104	2L_19829104_SNP [dm3] 2L_19829104_SNP [dm6]	A	T	3.339e^-5	0.449	INTRON sick
2L	733504	2L_733504_SNP [dm3] 2L_733504_SNP [dm6]	C	T	3.342e^-5	0.449	INTERGENIC
3R	6677740	3R_6677740_SNP [dm3] 3R_10852018_SNP [dm6]	C	A	3.376e^-5	0.449	UPSTREAM CG4565 DOWNSTREAM CG42394 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	14811980	X_14811980_SNP [dm3] X_14917947_SNP [dm6]	G	A	3.392e^-5	0.449	SYNONYMOUS_CODING Eo INTRON Flo2	TF binding site mE1_TFBS_cad
3L	17590773	3L_17590773_SNP [dm3] 3L_17597673_SNP [dm6]	C	T	3.401e^-5	0.449	NON_SYNONYMOUS_CODING Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	26570788	3R_26570788_SNP [dm3] 3R_30745066_SNP [dm6]	A	C	3.401e^-5	0.449	SYNONYMOUS_CODING Npc2g DOWNSTREAM CG15543 & 1 other	TF binding site mE1_TFBS_cad
3R	3405861	3R_3405861_SNP [dm3] 3R_7580139_SNP [dm6]	C	A	3.401e^-5	0.449	INTRON CG34127
X	3951292	X_3951292_SNP [dm3] X_4057259_SNP [dm6]	C	A	3.401e^-5	0.449	INTERGENIC
2L	14964147	2L_14964147_SNP [dm3] 2L_14964147_SNP [dm6]	G	T	3.525e^-5	0.449	INTRON CG42313
3L	14613652	3L_14613652_SNP [dm3] 3L_14620552_SNP [dm6]	T	C	3.718e^-5	0.449	INTRON shd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13657867	2R_13657867_SNP [dm3] 2R_17770362_SNP [dm6]	C	A	3.723e^-5	0.449	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25630860	3R_25630860_SNP [dm3] 3R_29805138_SNP [dm6]	C	A	3.849e^-5	0.449	SYNONYMOUS_CODING ncd DOWNSTREAM CG7789	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	14613490	3L_14613490_SNP [dm3] 3L_14620390_SNP [dm6]	G	T	3.902e^-5	0.449	SYNONYMOUS_CODING shd
X	5616587	X_5616587_SNP [dm3] X_5722554_SNP [dm6]	T	C	4.090e^-5	0.449	SYNONYMOUS_CODING CG32758	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2679714	3R_2679714_SNP [dm3] 3R_6853992_SNP [dm6]	C	A	4.110e^-5	0.449	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	17183946	3R_17183946_SNP [dm3] 3R_21358224_SNP [dm6]	C	T	4.122e^-5	0.449	UTR_5_PRIME pre-mod_mdg4_-J & 3 others UTR_3_PRIME pre-mod_mdg4_-K DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_ & 1 other
3R	17183948	3R_17183948_SNP [dm3] 3R_21358226_SNP [dm6]	T	G	4.122e^-5	0.449	UTR_5_PRIME pre-mod_mdg4_-J & 3 others UTR_3_PRIME pre-mod_mdg4_-K DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_ & 1 other
3R	26279848	3R_26279848_SNP [dm3] 3R_30454126_SNP [dm6]	C	T	4.145e^-5	0.449	UPSTREAM aralar1 INTRON aralar1
3R	17185841	3R_17185841_SNP [dm3] 3R_21360119_SNP [dm6]	A	G	4.169e^-5	0.449	UPSTREAM pre-mod_mdg4_-Z & 7 others INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17190619	3R_17190619_SNP [dm3] 3R_21364897_SNP [dm6]	C	A	4.169e^-5	0.449	NON_SYNONYMOUS_CODING mod_mdg4_ & 1 other UTR_5_PRIME pre-mod_mdg4_-AB & 1 other UPSTREAM pre-mod_mdg4_-X & 6 others INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	17190644	3R_17190644_SNP [dm3] 3R_21364922_SNP [dm6]	C	G	4.169e^-5	0.449	SYNONYMOUS_CODING mod_mdg4_ & 1 other UTR_5_PRIME pre-mod_mdg4_-AB & 1 other UPSTREAM pre-mod_mdg4_-X & 6 others INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	25362258	3R_25362258_SNP [dm3] 3R_29536536_SNP [dm6]	T	A	4.169e^-5	0.449	INTERGENIC
X	21264184	X_21264184_SNP [dm3] X_21393157_SNP [dm6]	A	T	4.169e^-5	0.449	INTERGENIC
2L	6103336	2L_6103336_SNP [dm3] 2L_6103336_SNP [dm6]	G	A	4.223e^-5	0.449	INTRON stai
3R	11001749	3R_11001749_SNP [dm3] 3R_15176027_SNP [dm6]	T	C	4.263e^-5	0.449	UTR_3_PRIME Mf INTRON Mf & 1 other
X	3206464	X_3206464_SNP [dm3] X_3312431_SNP [dm6]	T	C	4.267e^-5	0.449	DOWNSTREAM CR44886 INTRON dnc
3R	16294225	3R_16294225_SNP [dm3] 3R_20468503_SNP [dm6]	G	A	4.307e^-5	0.449	INTRON Gfrl
2L	5388110	2L_5388110_SNP [dm3] 2L_5388110_SNP [dm6]	G	A	4.309e^-5	0.449	EXON CR44745	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6757028	3L_6757028_SNP [dm3] 3L_6763928_SNP [dm6]	C	T	4.316e^-5	0.449	UPSTREAM CG32392 INTERGENIC	TF binding site mE1_TFBS_bab1
X	16225212	X_16225212_SNP [dm3] X_16331179_SNP [dm6]	T	A	4.362e^-5	0.449	UPSTREAM CG9919 DOWNSTREAM CG9921 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15545031	2L_15545031_SNP [dm3] 2L_15545031_SNP [dm6]	G	A	4.365e^-5	0.449	INTERGENIC
3R	12765329	3R_12765329_SNP [dm3] 3R_16939607_SNP [dm6]	G	A	4.415e^-5	0.449	INTRON Abd-B	TF binding site mE1_TFBS_cad
3L	5328365	3L_5328365_SNP [dm3] 3L_5335265_SNP [dm6]	A	T	4.429e^-5	0.449	DOWNSTREAM CR45742 INTERGENIC
3L	4866063	3L_4866063_SNP [dm3] 3L_4866063_SNP [dm6]	G	C	4.435e^-5	0.449	SPLICE_SITE_REGION CG17150 INTRON CG17150	TF binding site mE1_TFBS_inv
2R	18424802	2R_18424802_SNP [dm3] 2R_22537297_SNP [dm6]	G	A	4.442e^-5	0.449	SYNONYMOUS_CODING px
3R	27214678	3R_27214678_SNP [dm3] 3R_31388956_SNP [dm6]	G	T	4.447e^-5	0.449	INTRON CG1607	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	10010277	X_10010277_SNP [dm3] X_10116244_SNP [dm6]	G	A	4.453e^-5	0.449	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	4370318	X_4370318_SNP [dm3] X_4476285_SNP [dm6]	C	T	4.458e^-5	0.449	INTRON bi & 1 other
X	18229486	X_18229486_INS [dm3] X_18335453_INS [dm6]	T	TGT	4.577e^-5	0.449	INTRON CG6123
2R	12148250	2R_12148250_SNP [dm3] 2R_16260745_SNP [dm6]	G	C	4.585e^-5	0.449	UPSTREAM CngA INTERGENIC
3L	17587349	3L_17587349_SNP [dm3] 3L_17594249_SNP [dm6]	C	T	4.679e^-5	0.449	INTRON Eip74EF
3R	24423684	3R_24423684_SNP [dm3] 3R_28597962_SNP [dm6]	T	C	4.747e^-5	0.449	DOWNSTREAM Noa36 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17668372	3L_17668372_SNP [dm3] 3L_17675272_SNP [dm6]	T	C	4.766e^-5	0.449	INTRON CG34251
3R	25318858	3R_25318858_SNP [dm3] 3R_29493136_SNP [dm6]	A	C	4.845e^-5	0.449	UPSTREAM Diedel INTRON CG2310	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_zfh1
3L	18548045	3L_18548045_DEL [dm3] 3L_18554945_DEL [dm6]	TTTGGGGCCAGTTGGAG...	T	4.879e^-5	0.449	INTERGENIC
X	12839191	X_12839191_SNP [dm3] X_12945158_SNP [dm6]	C	A	4.928e^-5	0.449	INTRON fne
2R	17259791	2R_17259791_SNP [dm3] 2R_21372286_SNP [dm6]	G	A	4.942e^-5	0.449	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24423705	3R_24423705_SNP [dm3] 3R_28597983_SNP [dm6]	G	C	4.972e^-5	0.449	DOWNSTREAM Noa36 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24423765	3R_24423765_SNP [dm3] 3R_28598043_SNP [dm6]	G	A	4.972e^-5	0.449	DOWNSTREAM Noa36 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24425323	3R_24425323_SNP [dm3] 3R_28599601_SNP [dm6]	T	C	4.972e^-5	0.449	UPSTREAM Hrb98DE & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24425649	3R_24425649_SNP [dm3] 3R_28599927_SNP [dm6]	G	T	4.972e^-5	0.449	UTR_5_PRIME Hrb98DE UPSTREAM Noa36 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24426021	3R_24426021_SNP [dm3] 3R_28600299_SNP [dm6]	G	T	4.972e^-5	0.449	UPSTREAM Hrb98DE INTRON Hrb98DE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24426229	3R_24426229_SNP [dm3] 3R_28600507_SNP [dm6]	G	T	4.972e^-5	0.449	UTR_5_PRIME Hrb98DE INTRON Hrb98DE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA
2R	2435847	2R_2435847_SNP [dm3] 2R_6548342_SNP [dm6]	A	C	4.997e^-5	0.449	INTRON jing	TF binding site mE1_TFBS_chinmo
2L	13825927	2L_13825927_SNP [dm3] 2L_13825927_SNP [dm6]	C	T	4.998e^-5	0.449	NON_SYNONYMOUS_CODING tam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	1529223	3L_1529223_INS [dm3] 3L_1529223_INS [dm6]	G	GATG	4.998e^-5	0.449	CODON_INSERTION CG12090 DOWNSTREAM Ir62a INTRON CG12090
2R	8129596	2R_8129596_SNP [dm3] 2R_12242091_SNP [dm6]	C	T	4.998e^-5	0.449	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3R	3159527	3R_3159527_SNP [dm3] 3R_7333805_SNP [dm6]	C	T	5.005e^-5	0.449	INTERGENIC
3L	16900211	3L_16900211_SNP [dm3] 3L_16907111_SNP [dm6]	T	A	5.062e^-5	0.449	UTR_3_PRIME Lmpt INTRON Lmpt
2L	17315626	2L_17315626_SNP [dm3] 2L_17315626_SNP [dm6]	G	T	5.143e^-5	0.449	INTERGENIC
3R	22096546	3R_22096546_SNP [dm3] 3R_26270824_SNP [dm6]	T	C	5.273e^-5	0.449	INTRON CG6154
X	16225119	X_16225119_SNP [dm3] X_16331086_SNP [dm6]	A	C	5.306e^-5	0.449	UPSTREAM CG9919 DOWNSTREAM CG9921 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17176504	2R_17176504_SNP [dm3] 2R_21288999_SNP [dm6]	T	C	5.322e^-5	0.449	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
3L	19557938	3L_19557938_SNP [dm3] 3L_19564838_SNP [dm6]	C	T	5.408e^-5	0.449	UPSTREAM mir-9a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	19159592	3R_19159592_SNP [dm3] 3R_23333870_SNP [dm6]	C	T	5.438e^-5	0.449	INTRON pnt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	17006202	3R_17006202_SNP [dm3] 3R_21180480_SNP [dm6]	G	A	5.450e^-5	0.449	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	13844157	3R_13844157_SNP [dm3] 3R_18018435_SNP [dm6]	T	C	5.456e^-5	0.449	UTR_3_PRIME cpo UPSTREAM DNaseII
3L	4642253	3L_4642253_SNP [dm3] 3L_4642253_SNP [dm6]	A	C	5.461e^-5	0.449	UTR_3_PRIME axo INTRON axo
3R	16294229	3R_16294229_SNP [dm3] 3R_20468507_SNP [dm6]	C	T	5.502e^-5	0.449	INTRON Gfrl
3R	10157706	3R_10157706_SNP [dm3] 3R_14331984_SNP [dm6]	G	A	5.519e^-5	0.449	INTRON NK7.1
2R	19274087	2R_19274087_INS [dm3] 2R_23386564_INS [dm6]	T	TT	5.519e^-5	0.449	UTR_5_PRIME eIF2B-delta UPSTREAM eIF2B-delta & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	8119486	2R_8119486_SNP [dm3] 2R_12231981_SNP [dm6]	C	A	5.542e^-5	0.449	INTERGENIC
2R	8130175	2R_8130175_SNP [dm3] 2R_12242670_SNP [dm6]	A	T	5.542e^-5	0.449	NON_SYNONYMOUS_CODING CG43316 DOWNSTREAM CG43315
2R	8132105	2R_8132105_SNP [dm3] 2R_12244600_SNP [dm6]	C	A	5.542e^-5	0.449	NON_SYNONYMOUS_CODING CG43244
2R	9922385	2R_9922385_DEL [dm3] 2R_14034880_DEL [dm6]	TCCACATTTT	T	5.548e^-5	0.449	INTRON mam
2L	4431290	2L_4431290_SNP [dm3] 2L_4431290_SNP [dm6]	A	C	5.557e^-5	0.449	INTRON CG15431
2R	2481674	2R_2481674_SNP [dm3] 2R_6594169_SNP [dm6]	T	A	5.557e^-5	0.449	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	12775305	X_12775305_SNP [dm3] X_12881272_SNP [dm6]	G	A	5.586e^-5	0.449	INTRON Pde9
3R	23007891	3R_23007891_SNP [dm3] 3R_27182169_SNP [dm6]	C	T	5.607e^-5	0.449	INTRON Ser
2L	5743085	2L_5743085_SNP [dm3] 2L_5743085_SNP [dm6]	T	G	5.716e^-5	0.449	INTRON CG11030
2L	17438275	2L_17438275_SNP [dm3] 2L_17438275_SNP [dm6]	A	G	5.916e^-5	0.449	DOWNSTREAM dl INTRON dl	TF binding site BDTNP1_TFBS_dl
2L	17438277	2L_17438277_SNP [dm3] 2L_17438277_SNP [dm6]	A	C	5.916e^-5	0.449	DOWNSTREAM dl INTRON dl	TF binding site BDTNP1_TFBS_dl
2L	17438354	2L_17438354_SNP [dm3] 2L_17438354_SNP [dm6]	A	T	5.916e^-5	0.449	DOWNSTREAM dl INTRON dl
2L	17450014	2L_17450014_SNP [dm3] 2L_17450014_SNP [dm6]	C	T	5.916e^-5	0.449	UTR_5_PRIME dl INTRON dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	17450594	2L_17450594_SNP [dm3] 2L_17450594_SNP [dm6]	C	T	5.916e^-5	0.449	UPSTREAM dl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	17451687	2L_17451687_SNP [dm3] 2L_17451687_SNP [dm6]	T	G	5.916e^-5	0.449	INTERGENIC
2L	17451842	2L_17451842_SNP [dm3] 2L_17451842_SNP [dm6]	G	A	5.916e^-5	0.449	INTERGENIC
2L	5488272	2L_5488272_SNP [dm3] 2L_5488272_SNP [dm6]	G	A	5.955e^-5	0.449	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	20463708	2R_20463708_SNP [dm3] 2R_24576185_SNP [dm6]	A	G	5.955e^-5	0.449	INTRON Start1
3R	18863225	3R_18863225_SNP [dm3] 3R_23037503_SNP [dm6]	T	C	5.955e^-5	0.449	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8722699	2R_8722699_DEL [dm3] 2R_12835194_DEL [dm6]	AA	A	5.990e^-5	0.449	INTERGENIC
2L	3670092	2L_3670092_SNP [dm3] 2L_3670092_SNP [dm6]	G	T	6.112e^-5	0.449	UPSTREAM CG42463 & 1 other DOWNSTREAM Sfp24Bc INTRON CG34340
2R	16988319	2R_16988319_SNP [dm3] 2R_21100814_SNP [dm6]	T	C	6.123e^-5	0.449	SYNONYMOUS_CODING CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	17100384	3R_17100384_SNP [dm3] 3R_21274662_SNP [dm6]	C	A	6.125e^-5	0.449	UPSTREAM CG3308 DOWNSTREAM CG3301 INTRON CG3301
2L	3670076	2L_3670076_INS [dm3] 2L_3670076_INS [dm6]	A	AGA	6.139e^-5	0.449	UPSTREAM CG42463 & 1 other DOWNSTREAM Sfp24Bc INTRON CG34340
2R	2519985	2R_2519985_DEL [dm3] 2R_6632480_DEL [dm6]	GAG	G	6.204e^-5	0.449	UPSTREAM Vha16-1 INTRON Vha16-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_zfh1
2L	19907508	2L_19907508_SNP [dm3] 2L_19907508_SNP [dm6]	A	C	6.244e^-5	0.449	INTRON sick
2L	3670098	2L_3670098_DEL [dm3] 2L_3670098_DEL [dm6]	CTA	C	6.249e^-5	0.449	UPSTREAM CG42463 & 1 other DOWNSTREAM Sfp24Bc INTRON CG34340
2R	17412509	2R_17412509_SNP [dm3] 2R_21525004_SNP [dm6]	T	C	6.287e^-5	0.449	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	7229701	3L_7229701_SNP [dm3] 3L_7236601_SNP [dm6]	G	A	6.319e^-5	0.449	DOWNSTREAM CG14826 & 1 other INTERGENIC
3L	7229635	3L_7229635_SNP [dm3] 3L_7236535_SNP [dm6]	G	A	6.429e^-5	0.449	DOWNSTREAM CG14826 & 1 other INTERGENIC
3R	19426911	3R_19426911_DEL [dm3] 3R_23601189_DEL [dm6]	TATTTTCAGGCGCATAATGC...	C	6.438e^-5	0.449	DOWNSTREAM tRNA:CR31143 INTERGENIC
2R	16193103	2R_16193103_SNP [dm3] 2R_20305598_SNP [dm6]	T	A	6.525e^-5	0.449	INTRON CG11200
2R	16192959	2R_16192959_SNP [dm3] 2R_20305454_SNP [dm6]	G	A	6.580e^-5	0.449	SYNONYMOUS_CODING CG11200
2R	6873282	2R_6873282_SNP [dm3] 2R_10985777_SNP [dm6]	G	A	6.584e^-5	0.449	INTRON luna
3R	6653999	3R_6653999_SNP [dm3] 3R_10828277_SNP [dm6]	A	G	6.670e^-5	0.449	INTRON Cad86C	TF binding site BDTNP1_TFBS_dl
X	2267760	X_2267760_SNP [dm3] X_2373727_SNP [dm6]	A	G	6.756e^-5	0.449	SYNONYMOUS_CODING PsGEF UTR_3_PRIME PsGEF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8153707	2R_8153707_SNP [dm3] 2R_12266202_SNP [dm6]	C	T	6.776e^-5	0.449	INTRON Cam
3R	23944228	3R_23944228_SNP [dm3] 3R_28118506_SNP [dm6]	C	A	6.864e^-5	0.449	INTERGENIC
X	16225092	X_16225092_SNP [dm3] X_16331059_SNP [dm6]	A	C	6.882e^-5	0.449	UPSTREAM CG9919 DOWNSTREAM CG9921 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19864338	3R_19864338_SNP [dm3] 3R_24038616_SNP [dm6]	T	C	6.939e^-5	0.449	SYNONYMOUS_CODING spas UTR_5_PRIME Miro UPSTREAM Miro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	5806132	2R_5806132_SNP [dm3] 2R_9918627_SNP [dm6]	C	T	6.970e^-5	0.449	SYNONYMOUS_CODING Mef2
X	17076676	X_17076676_SNP [dm3] X_17182643_SNP [dm6]	G	A	6.986e^-5	0.449	DOWNSTREAM CR44026 INTRON baz
3L	10006031	3L_10006031_SNP [dm3] 3L_10012931_SNP [dm6]	A	G	7.067e^-5	0.449	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15090500	2L_15090500_SNP [dm3] 2L_15090500_SNP [dm6]	T	A	7.107e^-5	0.449	INTRON CG15270
2R	16988288	2R_16988288_SNP [dm3] 2R_21100783_SNP [dm6]	A	G	7.107e^-5	0.449	SYNONYMOUS_CODING CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
2R	16988306	2R_16988306_SNP [dm3] 2R_21100801_SNP [dm6]	T	C	7.107e^-5	0.449	SYNONYMOUS_CODING CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
3L	20721010	3L_20721010_SNP [dm3] 3L_20727910_SNP [dm6]	C	G	7.120e^-5	0.449	INTERGENIC
2R	8129477	2R_8129477_INS [dm3] 2R_12241972_INS [dm6]	C	ATT	7.132e^-5	0.449	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8129479	2R_8129479_SNP [dm3] 2R_12241974_SNP [dm6]	G	A	7.132e^-5	0.449	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
2R	8153632	2R_8153632_SNP [dm3] 2R_12266127_SNP [dm6]	G	A	7.135e^-5	0.449	INTRON Cam
3L	13133680	3L_13133680_SNP [dm3] 3L_13140580_SNP [dm6]	A	G	7.137e^-5	0.449	INTERGENIC
2L	13806484	2L_13806484_SNP [dm3] 2L_13806484_SNP [dm6]	C	T	7.196e^-5	0.449	INTRON CAH1
2L	15509869	2L_15509869_SNP [dm3] 2L_15509869_SNP [dm6]	G	T	7.196e^-5	0.449	INTERGENIC
2L	17299117	2L_17299117_SNP [dm3] 2L_17299117_SNP [dm6]	T	C	7.196e^-5	0.449	INTERGENIC
2L	17315218	2L_17315218_SNP [dm3] 2L_17315218_SNP [dm6]	T	C	7.196e^-5	0.449	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17315237	2L_17315237_SNP [dm3] 2L_17315237_SNP [dm6]	A	T	7.196e^-5	0.449	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17397527	2L_17397527_SNP [dm3] 2L_17397527_SNP [dm6]	A	G	7.196e^-5	0.449	INTRON CLIP-190
2L	3949694	2L_3949694_SNP [dm3] 2L_3949694_SNP [dm6]	T	A	7.196e^-5	0.449	INTRON fred
2L	4238951	2L_4238951_SNP [dm3] 2L_4238951_SNP [dm6]	C	T	7.196e^-5	0.449	INTERGENIC
2L	5163521	2L_5163521_SNP [dm3] 2L_5163521_SNP [dm6]	A	T	7.196e^-5	0.449	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	543997	2L_543997_SNP [dm3] 2L_543997_SNP [dm6]	T	C	7.196e^-5	0.449	SYNONYMOUS_CODING Spp DOWNSTREAM Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	544015	2L_544015_SNP [dm3] 2L_544015_SNP [dm6]	C	G	7.196e^-5	0.449	SYNONYMOUS_CODING Spp DOWNSTREAM Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	544021	2L_544021_SNP [dm3] 2L_544021_SNP [dm6]	A	G	7.196e^-5	0.449	SYNONYMOUS_CODING Spp DOWNSTREAM Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5814034	2L_5814034_SNP [dm3] 2L_5814034_SNP [dm6]	T	C	7.196e^-5	0.449	INTERGENIC
2L	5815459	2L_5815459_SNP [dm3] 2L_5815459_SNP [dm6]	T	C	7.196e^-5	0.449	INTERGENIC
2L	6103594	2L_6103594_SNP [dm3] 2L_6103594_SNP [dm6]	C	T	7.196e^-5	0.449	INTRON stai
2R	11792538	2R_11792538_SNP [dm3] 2R_15905033_SNP [dm6]	G	C	7.196e^-5	0.449	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	12272215	2R_12272215_SNP [dm3] 2R_16384710_SNP [dm6]	C	T	7.196e^-5	0.449	UTR_3_PRIME CG43187
2R	1577100	2R_1577100_SNP [dm3] 2R_5689595_SNP [dm6]	G	C	7.196e^-5	0.449	INTRON scaf
2R	1977434	2R_1977434_SNP [dm3] 2R_6089929_SNP [dm6]	G	A	7.196e^-5	0.449	UTR_3_PRIME EcR DOWNSTREAM EcR	TF binding site mE1_TFBS_zfh1
2R	5792059	2R_5792059_SNP [dm3] 2R_9904554_SNP [dm6]	G	T	7.196e^-5	0.449	INTERGENIC
2R	6445527	2R_6445527_SNP [dm3] 2R_10558022_SNP [dm6]	C	T	7.196e^-5	0.449	UTR_5_PRIME psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6831152	2R_6831152_SNP [dm3] 2R_10943647_SNP [dm6]	C	A	7.196e^-5	0.449	INTERGENIC
2R	7838829	2R_7838829_SNP [dm3] 2R_11951324_SNP [dm6]	T	A	7.196e^-5	0.449	INTRON CG13188
2R	8812433	2R_8812433_SNP [dm3] 2R_12924928_SNP [dm6]	A	T	7.196e^-5	0.449	DOWNSTREAM CG13319 INTRON sug	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9215825	2R_9215825_INS [dm3] 2R_13328320_INS [dm6]	A	AGTAGCA	7.196e^-5	0.449	INTERGENIC
3L	12938444	3L_12938444_SNP [dm3] 3L_12945344_SNP [dm6]	A	G	7.196e^-5	0.449	INTERGENIC
3L	13873234	3L_13873234_SNP [dm3] 3L_13880134_SNP [dm6]	G	A	7.196e^-5	0.449	INTRON dysc & 1 other
3L	13873420	3L_13873420_SNP [dm3] 3L_13880320_SNP [dm6]	T	G	7.196e^-5	0.449	INTRON dysc & 1 other
3L	14551078	3L_14551078_SNP [dm3] 3L_14557978_SNP [dm6]	C	T	7.196e^-5	0.449	INTERGENIC
3L	14851628	3L_14851628_SNP [dm3] 3L_14858528_SNP [dm6]	A	G	7.196e^-5	0.449	INTRON CG17839
3L	14851658	3L_14851658_INS [dm3] 3L_14858558_INS [dm6]	A	AC	7.196e^-5	0.449	INTRON CG17839
3L	15594096	3L_15594096_SNP [dm3] 3L_15600996_SNP [dm6]	A	C	7.196e^-5	0.449	INTRON RhoGAP71E
3L	15594125	3L_15594125_SNP [dm3] 3L_15601025_SNP [dm6]	G	T	7.196e^-5	0.449	INTRON RhoGAP71E
3L	17579196	3L_17579196_SNP [dm3] 3L_17586096_SNP [dm6]	A	G	7.196e^-5	0.449	INTRON Eip74EF	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	17592194	3L_17592194_SNP [dm3] 3L_17599094_SNP [dm6]	A	T	7.196e^-5	0.449	UTR_5_PRIME Eip74EF
3L	17595608	3L_17595608_SNP [dm3] 3L_17602508_SNP [dm6]	A	G	7.196e^-5	0.449	INTRON Eip74EF
3L	17601907	3L_17601907_SNP [dm3] 3L_17608807_SNP [dm6]	G	A	7.196e^-5	0.449	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17603831	3L_17603831_SNP [dm3] 3L_17610731_SNP [dm6]	T	C	7.196e^-5	0.449	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	17603841	3L_17603841_SNP [dm3] 3L_17610741_SNP [dm6]	G	A	7.196e^-5	0.449	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	17603931	3L_17603931_SNP [dm3] 3L_17610831_SNP [dm6]	A	T	7.196e^-5	0.449	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	17605561	3L_17605561_SNP [dm3] 3L_17612461_SNP [dm6]	C	T	7.196e^-5	0.449	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	17606590	3L_17606590_SNP [dm3] 3L_17613490_SNP [dm6]	C	A	7.196e^-5	0.449	INTRON Eip74EF	TF binding site BDTNP1_TFBS_z
3L	17609637	3L_17609637_SNP [dm3] 3L_17616537_SNP [dm6]	C	T	7.196e^-5	0.449	INTRON Eip74EF
3L	17610428	3L_17610428_SNP [dm3] 3L_17617328_SNP [dm6]	C	G	7.196e^-5	0.449	INTRON Eip74EF
3L	17612777	3L_17612777_SNP [dm3] 3L_17619677_SNP [dm6]	G	A	7.196e^-5	0.449	UPSTREAM Eip74EF DOWNSTREAM CG6259 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	17612866	3L_17612866_SNP [dm3] 3L_17619766_SNP [dm6]	G	A	7.196e^-5	0.449	UPSTREAM Eip74EF DOWNSTREAM CG6259 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb mE1_TFBS_Trl
3L	17613267	3L_17613267_SNP [dm3] 3L_17620167_SNP [dm6]	G	C	7.196e^-5	0.449	UTR_3_PRIME CG6259 UPSTREAM Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	17614712	3L_17614712_SNP [dm3] 3L_17621612_SNP [dm6]	T	A	7.196e^-5	0.449	UTR_5_PRIME CG6259 UPSTREAM CG7510 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	17615276	3L_17615276_DEL [dm3] 3L_17622176_DEL [dm6]	CC	T	7.196e^-5	0.449	UTR_5_PRIME CG7510 UPSTREAM CG6259	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	17617482	3L_17617482_DEL [dm3] 3L_17624382_DEL [dm6]	TTTAGCTCTTAGACTTATCT...	T	7.196e^-5	0.449	INTRON CG7510
3L	17620319	3L_17620319_SNP [dm3] 3L_17627219_SNP [dm6]	C	T	7.196e^-5	0.449	SYNONYMOUS_CODING CG7510 UPSTREAM scaRNA:MeU4-A65
3L	17620603	3L_17620603_SNP [dm3] 3L_17627503_SNP [dm6]	G	T	7.196e^-5	0.449	NON_SYNONYMOUS_CODING CG7510 UPSTREAM scaRNA:MeU4-A65
3L	17620710	3L_17620710_SNP [dm3] 3L_17627610_SNP [dm6]	T	C	7.196e^-5	0.449	SPLICE_SITE_REGION CG7510 UPSTREAM scaRNA:MeU4-A65 INTRON CG7510
3L	17622585	3L_17622585_SNP [dm3] 3L_17629485_SNP [dm6]	G	A	7.196e^-5	0.449	INTRON CG7510
3L	17623401	3L_17623401_INS [dm3] 3L_17630301_INS [dm6]	GT	AATATA	7.196e^-5	0.449	UTR_3_PRIME CG7510
3L	17623421	3L_17623421_DEL [dm3] 3L_17630321_DEL [dm6]	AACTT	A	7.196e^-5	0.449	UTR_3_PRIME CG7510
3L	17624067	3L_17624067_SNP [dm3] 3L_17630967_SNP [dm6]	G	A	7.196e^-5	0.449	UTR_3_PRIME CG7510 UPSTREAM CR44566 DOWNSTREAM CG7510
3L	17627104	3L_17627104_SNP [dm3] 3L_17634004_SNP [dm6]	C	T	7.196e^-5	0.449	UPSTREAM CR44567 INTRON CG7497
3L	17627105	3L_17627105_SNP [dm3] 3L_17634005_SNP [dm6]	T	G	7.196e^-5	0.449	UPSTREAM CR44567 INTRON CG7497
3L	17627107	3L_17627107_SNP [dm3] 3L_17634007_SNP [dm6]	G	T	7.196e^-5	0.449	UPSTREAM CR44567 INTRON CG7497
3L	17627108	3L_17627108_SNP [dm3] 3L_17634008_SNP [dm6]	C	T	7.196e^-5	0.449	UPSTREAM CR44567 INTRON CG7497
3L	17627163	3L_17627163_SNP [dm3] 3L_17634063_SNP [dm6]	C	T	7.196e^-5	0.449	UPSTREAM CR44567 INTRON CG7497
3L	17627195	3L_17627195_SNP [dm3] 3L_17634095_SNP [dm6]	A	G	7.196e^-5	0.449	UPSTREAM CR44567 INTRON CG7497
3L	17627199	3L_17627199_SNP [dm3] 3L_17634099_SNP [dm6]	T	C	7.196e^-5	0.449	UPSTREAM CR44567 INTRON CG7497
3L	17627242	3L_17627242_SNP [dm3] 3L_17634142_SNP [dm6]	A	G	7.196e^-5	0.449	UPSTREAM CR44567 INTRON CG7497
3L	17655893	3L_17655893_SNP [dm3] 3L_17662793_SNP [dm6]	C	T	7.196e^-5	0.449	SYNONYMOUS_CODING Crtc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17660494	3L_17660494_SNP [dm3] 3L_17667394_SNP [dm6]	A	T	7.196e^-5	0.449	INTRON Crtc	TF binding site BDTNP1_TFBS_dl
3L	8707497	3L_8707497_DEL [dm3] 3L_8714397_DEL [dm6]	CCATA	TGTG	7.196e^-5	0.449	INTERGENIC	regulatory region REDfly_CRMs
3R	12855693	3R_12855693_SNP [dm3] 3R_17029971_SNP [dm6]	A	G	7.196e^-5	0.449	SYNONYMOUS_CODING CG5225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	12902448	3R_12902448_SNP [dm3] 3R_17076726_SNP [dm6]	G	T	7.196e^-5	0.449	NON_SYNONYMOUS_CODING Keap1
3R	14902590	3R_14902590_SNP [dm3] 3R_19076868_SNP [dm6]	G	A	7.196e^-5	0.449	INTRON cdi
3R	17104760	3R_17104760_SNP [dm3] 3R_21279038_SNP [dm6]	C	T	7.196e^-5	0.449	UTR_3_PRIME SIFaR	TF binding site mE1_TFBS_cad
3R	17105154	3R_17105154_SNP [dm3] 3R_21279432_SNP [dm6]	A	G	7.196e^-5	0.449	SYNONYMOUS_CODING SIFaR	TF binding site mE1_TFBS_cad
3R	17105163	3R_17105163_SNP [dm3] 3R_21279441_SNP [dm6]	A	G	7.196e^-5	0.449	SYNONYMOUS_CODING SIFaR	TF binding site mE1_TFBS_cad
3R	17867436	3R_17867436_SNP [dm3] 3R_22041714_SNP [dm6]	C	T	7.196e^-5	0.449	UPSTREAM how INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	21391134	3R_21391134_SNP [dm3] 3R_25565412_SNP [dm6]	C	A	7.196e^-5	0.449	INTRON msi
3R	21391180	3R_21391180_DEL [dm3] 3R_25565458_DEL [dm6]	TTG	CA	7.196e^-5	0.449	INTRON msi
3R	21391190	3R_21391190_SNP [dm3] 3R_25565468_SNP [dm6]	C	T	7.196e^-5	0.449	INTRON msi
3R	24035562	3R_24035562_SNP [dm3] 3R_28209840_SNP [dm6]	G	T	7.196e^-5	0.449	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25721933	3R_25721933_SNP [dm3] 3R_29896211_SNP [dm6]	T	C	7.196e^-5	0.449	INTRON CG31038	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25722127	3R_25722127_SNP [dm3] 3R_29896405_SNP [dm6]	C	T	7.196e^-5	0.449	INTRON CG31038	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26266030	3R_26266030_SNP [dm3] 3R_30440308_SNP [dm6]	T	C	7.196e^-5	0.449	INTRON CG15537
3R	26566589	3R_26566589_SNP [dm3] 3R_30740867_SNP [dm6]	C	T	7.196e^-5	0.449	INTERGENIC
3R	6651118	3R_6651118_SNP [dm3] 3R_10825396_SNP [dm6]	A	C	7.196e^-5	0.449	INTERGENIC
3R	6660452	3R_6660452_SNP [dm3] 3R_10834730_SNP [dm6]	A	T	7.196e^-5	0.449	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6661676	3R_6661676_SNP [dm3] 3R_10835954_SNP [dm6]	G	T	7.196e^-5	0.449	INTRON Cad86C
3R	6664729	3R_6664729_SNP [dm3] 3R_10839007_SNP [dm6]	T	G	7.196e^-5	0.449	INTRON Cad86C
3R	6672391	3R_6672391_SNP [dm3] 3R_10846669_SNP [dm6]	A	T	7.196e^-5	0.449	NON_SYNONYMOUS_CODING Cad86C UTR_3_PRIME Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6676535	3R_6676535_SNP [dm3] 3R_10850813_SNP [dm6]	G	A	7.196e^-5	0.449	INTRON CG42394	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	6677178	3R_6677178_SNP [dm3] 3R_10851456_SNP [dm6]	T	G	7.196e^-5	0.449	NON_SYNONYMOUS_CODING CG42394	TF binding site BDTNP1_TFBS_dl
3R	6678823	3R_6678823_SNP [dm3] 3R_10853101_SNP [dm6]	G	T	7.196e^-5	0.449	SYNONYMOUS_CODING CG4565 DOWNSTREAM CG6567	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	6682323	3R_6682323_SNP [dm3] 3R_10856601_SNP [dm6]	G	A	7.196e^-5	0.449	UPSTREAM CG4570 DOWNSTREAM CG4511 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6684439	3R_6684439_SNP [dm3] 3R_10858717_SNP [dm6]	A	T	7.196e^-5	0.449	SYNONYMOUS_CODING CG14694 DOWNSTREAM CG4570	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	6685499	3R_6685499_SNP [dm3] 3R_10859777_SNP [dm6]	G	A	7.196e^-5	0.449	SYNONYMOUS_CODING CG14694 DOWNSTREAM CG6574	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6689173	3R_6689173_INS [dm3] 3R_10863451_INS [dm6]	T	TT	7.196e^-5	0.449	UTR_3_PRIME SelR UPSTREAM CG6574 DOWNSTREAM SelR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	6690825	3R_6690825_SNP [dm3] 3R_10865103_SNP [dm6]	A	T	7.196e^-5	0.449	UTR_3_PRIME SelR INTRON SelR
3R	7981421	3R_7981421_SNP [dm3] 3R_12155699_SNP [dm6]	G	A	7.196e^-5	0.449	INTRON dpr15
X	13982660	X_13982660_SNP [dm3] X_14088627_SNP [dm6]	A	G	7.196e^-5	0.449	INTERGENIC
X	21903919	X_21903919_SNP [dm3] X_22502083_SNP [dm6]	G	A	7.196e^-5	0.449	NON_SYNONYMOUS_CODING l_1_G0196 INTRON l_1_G0196	TF binding site mE1_TFBS_sens
X	3023232	X_3023232_SNP [dm3] X_3129199_SNP [dm6]	C	G	7.196e^-5	0.449	INTRON kirre
X	3953964	X_3953964_SNP [dm3] X_4059931_SNP [dm6]	G	C	7.196e^-5	0.449	INTERGENIC
2R	14154836	2R_14154836_SNP [dm3] 2R_18267331_SNP [dm6]	G	A	7.207e^-5	0.449	INTERGENIC
2R	14155540	2R_14155540_SNP [dm3] 2R_18268035_SNP [dm6]	C	T	7.207e^-5	0.449	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8119487	2R_8119487_SNP [dm3] 2R_12231982_SNP [dm6]	C	A	7.242e^-5	0.449	INTERGENIC
3R	3392633	3R_3392633_SNP [dm3] 3R_7566911_SNP [dm6]	C	A	7.270e^-5	0.449	INTERGENIC
3L	11297913	3L_11297913_SNP [dm3] 3L_11304813_SNP [dm6]	A	T	7.278e^-5	0.449	INTERGENIC
3R	24425239	3R_24425239_SNP [dm3] 3R_28599517_SNP [dm6]	T	A	7.294e^-5	0.449	UPSTREAM Hrb98DE & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
X	16225094	X_16225094_INS [dm3] X_16331061_INS [dm6]	A	ATTATTT	7.311e^-5	0.449	UPSTREAM CG9919 DOWNSTREAM CG9921 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16225182	X_16225182_SNP [dm3] X_16331149_SNP [dm6]	T	A	7.321e^-5	0.449	UPSTREAM CG9919 DOWNSTREAM CG9921 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11193045	3L_11193045_INS [dm3] 3L_11199945_INS [dm6]	T	TT	7.371e^-5	0.449	INTRON Plod & 1 other
2L	17315624	2L_17315624_INS [dm3] 2L_17315624_INS [dm6]	C	CTTCTTTG	7.567e^-5	0.449	INTERGENIC
3R	10012782	3R_10012782_SNP [dm3] 3R_14187060_SNP [dm6]	A	T	7.609e^-5	0.449	INTRON Dop1R1
2R	6450041	2R_6450041_SNP [dm3] 2R_10562536_SNP [dm6]	C	A	7.611e^-5	0.449	INTRON psq	TF binding site BDTNP1_TFBS_twi
3R	3901162	3R_3901162_SNP [dm3] 3R_8075440_SNP [dm6]	C	A	7.611e^-5	0.449	UPSTREAM snoRNA:Me18S-G423 INTRON mAChR-B
3L	5252902	3L_5252902_DEL [dm3] 3L_5259802_DEL [dm6]	TTTG	A	7.626e^-5	0.449	INTRON shep
3R	12756576	3R_12756576_SNP [dm3] 3R_16930854_SNP [dm6]	C	T	7.637e^-5	0.449	INTRON Abd-B
3R	26280028	3R_26280028_SNP [dm3] 3R_30454306_SNP [dm6]	C	A	7.638e^-5	0.449	UPSTREAM aralar1 INTRON aralar1
3L	2610783	3L_2610783_SNP [dm3] 3L_2610783_SNP [dm6]	C	T	7.753e^-5	0.449	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15592148	3L_15592148_SNP [dm3] 3L_15599048_SNP [dm6]	C	A	7.767e^-5	0.449	INTRON RhoGAP71E
3L	15592161	3L_15592161_SNP [dm3] 3L_15599061_SNP [dm6]	T	A	7.767e^-5	0.449	INTRON RhoGAP71E
3L	15592174	3L_15592174_SNP [dm3] 3L_15599074_SNP [dm6]	C	A	7.767e^-5	0.449	INTRON RhoGAP71E
3L	6537551	3L_6537551_SNP [dm3] 3L_6544451_SNP [dm6]	T	A	7.767e^-5	0.449	INTRON sfl
3L	6537552	3L_6537552_DEL [dm3] 3L_6544452_DEL [dm6]	TTC	T	7.767e^-5	0.449	INTRON sfl
2R	7068280	2R_7068280_SNP [dm3] 2R_11180775_SNP [dm6]	G	A	7.806e^-5	0.449	INTRON shn
3L	17623578	3L_17623578_SNP [dm3] 3L_17630478_SNP [dm6]	C	T	7.834e^-5	0.449	UTR_3_PRIME CG7510 UPSTREAM CR44566
X	13161901	X_13161901_SNP [dm3] X_13267868_SNP [dm6]	C	G	7.858e^-5	0.449	SYNONYMOUS_CODING HDAC4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5677913	3R_5677913_SNP [dm3] 3R_9852191_SNP [dm6]	G	C	7.885e^-5	0.449	INTRON Teh1
3L	6756997	3L_6756997_SNP [dm3] 3L_6763897_SNP [dm6]	G	T	7.895e^-5	0.449	UPSTREAM CG32392 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	25362146	3R_25362146_SNP [dm3] 3R_29536424_SNP [dm6]	G	T	7.896e^-5	0.449	INTERGENIC
3R	25362154	3R_25362154_SNP [dm3] 3R_29536432_SNP [dm6]	G	T	7.896e^-5	0.449	INTERGENIC
3R	2537188	3R_2537188_SNP [dm3] 3R_6711466_SNP [dm6]	C	T	7.989e^-5	0.449	INTRON pb
3R	2538416	3R_2538416_SNP [dm3] 3R_6712694_SNP [dm6]	A	C	7.989e^-5	0.449	INTRON pb	regulatory region REDfly_CRMs
3R	2538420	3R_2538420_SNP [dm3] 3R_6712698_SNP [dm6]	C	A	7.989e^-5	0.449	INTRON pb	regulatory region REDfly_CRMs
3L	13023827	3L_13023827_SNP [dm3] 3L_13030727_SNP [dm6]	A	G	8.016e^-5	0.449	INTRON CG17672	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	8123758	2R_8123758_SNP [dm3] 2R_12236253_SNP [dm6]	G	A	8.052e^-5	0.449	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	8132370	2R_8132370_SNP [dm3] 2R_12244865_SNP [dm6]	G	A	8.052e^-5	0.449	UPSTREAM CG43244 INTERGENIC
2R	8136797	2R_8136797_SNP [dm3] 2R_12249292_SNP [dm6]	G	A	8.052e^-5	0.449	INTERGENIC
3R	25336267	3R_25336267_SNP [dm3] 3R_29510545_SNP [dm6]	C	G	8.167e^-5	0.449	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8093583	3R_8093583_SNP [dm3] 3R_12267861_SNP [dm6]	A	G	8.167e^-5	0.449	UPSTREAM CR44039 INTRON svp
2L	7080340	2L_7080340_SNP [dm3] 2L_7080340_SNP [dm6]	A	T	8.169e^-5	0.449	UPSTREAM CR44611 INTRON Pvf2
3R	24424994	3R_24424994_SNP [dm3] 3R_28599272_SNP [dm6]	T	C	8.220e^-5	0.449	UTR_5_PRIME Noa36 UPSTREAM Hrb98DE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
3R	25802741	3R_25802741_SNP [dm3] 3R_29977019_SNP [dm6]	G	A	8.231e^-5	0.449	INTERGENIC
3R	25802767	3R_25802767_SNP [dm3] 3R_29977045_SNP [dm6]	C	A	8.231e^-5	0.449	INTERGENIC
3R	26092528	3R_26092528_SNP [dm3] 3R_30266806_SNP [dm6]	T	C	8.262e^-5	0.449	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	13040936	3L_13040936_SNP [dm3] 3L_13047836_SNP [dm6]	A	G	8.327e^-5	0.449	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6679787	3R_6679787_SNP [dm3] 3R_10854065_SNP [dm6]	G	A	8.327e^-5	0.449	SYNONYMOUS_CODING CG6567 UPSTREAM CG4511 DOWNSTREAM CG4565	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	11652831	X_11652831_SNP [dm3] X_11758798_SNP [dm6]	A	G	8.327e^-5	0.449	INTRON m
2L	5838745	2L_5838745_SNP [dm3] 2L_5838745_SNP [dm6]	G	C	8.332e^-5	0.449	INTRON TrissinR
3R	18701918	3R_18701918_SNP [dm3] 3R_22876196_SNP [dm6]	C	G	8.332e^-5	0.449	INTERGENIC
2L	3152943	2L_3152943_SNP [dm3] 2L_3152943_SNP [dm6]	T	A	8.361e^-5	0.449	UPSTREAM Mad INTRON Mad	TF binding site BDTNP1_TFBS_dl
3L	17577620	3L_17577620_SNP [dm3] 3L_17584520_SNP [dm6]	T	C	8.361e^-5	0.449	INTRON Eip74EF
X	12775269	X_12775269_DEL [dm3] X_12881236_DEL [dm6]	AT	A	8.408e^-5	0.449	INTRON Pde9
2L	15088626	2L_15088626_SNP [dm3] 2L_15088626_SNP [dm6]	T	A	8.562e^-5	0.449	INTRON CG15270
3R	18167381	3R_18167381_SNP [dm3] 3R_22341659_SNP [dm6]	A	G	8.595e^-5	0.449	SYNONYMOUS_CODING CG5386
2L	16041307	2L_16041307_SNP [dm3] 2L_16041307_SNP [dm6]	C	T	8.629e^-5	0.449	UTR_3_PRIME beat-Ic UPSTREAM BicC & 1 other DOWNSTREAM beat-Ic
3R	20934022	3R_20934022_SNP [dm3] 3R_25108300_SNP [dm6]	A	C	8.706e^-5	0.449	DOWNSTREAM CG13650 INTRON CG34027
3L	563139	3L_563139_DEL [dm3] 3L_563139_DEL [dm6]	GAGACAAAAACATGAAGAAA...	G	8.720e^-5	0.449	INTRON hipk
3L	7817083	3L_7817083_SNP [dm3] 3L_7823983_SNP [dm6]	T	C	8.752e^-5	0.449	INTRON Pdp1
3L	13118298	3L_13118298_SNP [dm3] 3L_13125198_SNP [dm6]	T	G	8.771e^-5	0.449	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22110355	3R_22110355_SNP [dm3] 3R_26284633_SNP [dm6]	G	A	8.790e^-5	0.449	INTERGENIC
3R	18449998	3R_18449998_SNP [dm3] 3R_22624276_SNP [dm6]	C	T	8.917e^-5	0.449	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	16289732	3R_16289732_SNP [dm3] 3R_20464010_SNP [dm6]	C	T	8.992e^-5	0.449	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2R	2454309	2R_2454309_SNP [dm3] 2R_6566804_SNP [dm6]	G	A	9.026e^-5	0.449	INTRON jing
2L	7149917	2L_7149917_DEL [dm3] 2L_7149917_DEL [dm6]	ATAA	A	9.055e^-5	0.449	INTRON Pvf3
2R	7403939	2R_7403939_SNP [dm3] 2R_11516434_SNP [dm6]	G	A	9.061e^-5	0.449	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	20338043	2R_20338043_SNP [dm3] 2R_24450520_SNP [dm6]	G	A	9.073e^-5	0.449	DOWNSTREAM CG4563 INTERGENIC
2R	20341831	2R_20341831_SNP [dm3] 2R_24454308_SNP [dm6]	C	A	9.073e^-5	0.449	UPSTREAM CG13579 INTERGENIC
3R	6652867	3R_6652867_SNP [dm3] 3R_10827145_SNP [dm6]	G	A	9.073e^-5	0.449	UTR_5_PRIME Cad86C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6537548	3L_6537548_SNP [dm3] 3L_6544448_SNP [dm6]	C	T	9.131e^-5	0.449	INTRON sfl
X	18914213	X_18914213_DEL [dm3] X_19020180_DEL [dm6]	GG	G	9.140e^-5	0.449	INTRON CG43759
3R	17697108	3R_17697108_SNP [dm3] 3R_21871386_SNP [dm6]	G	T	9.151e^-5	0.449	UPSTREAM CG31431 INTRON CG31431	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18096353	2R_18096353_SNP [dm3] 2R_22208848_SNP [dm6]	C	T	9.165e^-5	0.449	UTR_3_PRIME CG3264 UPSTREAM CG3290 DOWNSTREAM CG3264
X	20542845	X_20542845_SNP [dm3] X_20671818_SNP [dm6]	T	A	9.194e^-5	0.449	NON_SYNONYMOUS_CODING hydra	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5402861	2R_5402861_SNP [dm3] 2R_9515356_SNP [dm6]	C	G	9.210e^-5	0.449	INTRON brp	TF binding site mE1_TFBS_chinmo
2R	8154298	2R_8154298_SNP [dm3] 2R_12266793_SNP [dm6]	T	A	9.227e^-5	0.449	INTRON Cam
3L	18135532	3L_18135532_SNP [dm3] 3L_18142432_SNP [dm6]	A	G	9.239e^-5	0.449	INTRON gk
X	12001640	X_12001640_SNP [dm3] X_12107607_SNP [dm6]	A	G	9.247e^-5	0.449	SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other
3R	17936763	3R_17936763_SNP [dm3] 3R_22111041_SNP [dm6]	C	T	9.268e^-5	0.449	UPSTREAM CG5778 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	680641	3L_680641_SNP [dm3] 3L_680641_SNP [dm6]	T	C	9.270e^-5	0.449	UTR_3_PRIME CG3386 UPSTREAM CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	6687266	3R_6687266_SNP [dm3] 3R_10861544_SNP [dm6]	C	G	9.270e^-5	0.449	NON_SYNONYMOUS_CODING CG6574	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5841211	3L_5841211_SNP [dm3] 3L_5848111_SNP [dm6]	C	A	9.286e^-5	0.449	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	17451343	2L_17451343_SNP [dm3] 2L_17451343_SNP [dm6]	C	T	9.289e^-5	0.449	UPSTREAM dl INTERGENIC
3R	26132162	3R_26132162_SNP [dm3] 3R_30306440_SNP [dm6]	G	A	9.309e^-5	0.449	INTRON hdc & 1 other
2L	17348773	2L_17348773_DEL [dm3] 2L_17348773_DEL [dm6]	GG	G	9.377e^-5	0.449	INTERGENIC
3L	8443575	3L_8443575_DEL [dm3] 3L_8450475_DEL [dm6]	ACAA	A	9.377e^-5	0.449	UPSTREAM Gug INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	20372479	2L_20372479_SNP [dm3] 2L_20372479_SNP [dm6]	C	T	9.433e^-5	0.449	SYNONYMOUS_CODING Ugt37a1
X	12380426	X_12380426_SNP [dm3] X_12486393_SNP [dm6]	C	T	9.457e^-5	0.449	UPSTREAM Cpr11A INTERGENIC
3R	21441030	3R_21441030_SNP [dm3] 3R_25615308_SNP [dm6]	T	A	9.462e^-5	0.449	DOWNSTREAM CG5079 INTRON Npl4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18222093	3L_18222093_SNP [dm3] 3L_18228993_SNP [dm6]	C	A	9.515e^-5	0.449	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17409232	2L_17409232_SNP [dm3] 2L_17409232_SNP [dm6]	C	T	9.542e^-5	0.449	SYNONYMOUS_CODING CLIP-190 DOWNSTREAM Rpb11
2R	16498931	2R_16498931_SNP [dm3] 2R_20611426_SNP [dm6]	C	T	9.542e^-5	0.449	INTRON Hil	TF binding site BDTNP1_TFBS_dl
3L	14546441	3L_14546441_SNP [dm3] 3L_14553341_SNP [dm6]	C	A	9.542e^-5	0.449	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3L	17622662	3L_17622662_SNP [dm3] 3L_17629562_SNP [dm6]	A	T	9.542e^-5	0.449	INTRON CG7510
3L	17624527	3L_17624527_SNP [dm3] 3L_17631427_SNP [dm6]	G	T	9.542e^-5	0.449	DOWNSTREAM CG7510 EXON CR44566
3L	17624822	3L_17624822_SNP [dm3] 3L_17631722_SNP [dm6]	G	C	9.542e^-5	0.449	DOWNSTREAM CG7510 EXON CR44566
3L	17626163	3L_17626163_SNP [dm3] 3L_17633063_SNP [dm6]	G	A	9.542e^-5	0.449	UPSTREAM CG7497 DOWNSTREAM CR44566 EXON CR44567
3L	17626166	3L_17626166_SNP [dm3] 3L_17633066_SNP [dm6]	G	A	9.542e^-5	0.449	UPSTREAM CG7497 DOWNSTREAM CR44566 EXON CR44567
3L	17626186	3L_17626186_SNP [dm3] 3L_17633086_SNP [dm6]	A	G	9.542e^-5	0.449	UPSTREAM CG7497 DOWNSTREAM CR44566 EXON CR44567
3L	17626495	3L_17626495_SNP [dm3] 3L_17633395_SNP [dm6]	G	T	9.542e^-5	0.449	UPSTREAM CG7497 & 1 other INTERGENIC
3L	8707390	3L_8707390_SNP [dm3] 3L_8714290_SNP [dm6]	C	A	9.542e^-5	0.449	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	17103686	3R_17103686_SNP [dm3] 3R_21277964_SNP [dm6]	T	C	9.542e^-5	0.449	UTR_3_PRIME SIFaR
3R	6687830	3R_6687830_SNP [dm3] 3R_10862108_SNP [dm6]	A	C	9.542e^-5	0.449	INTRON CG6574	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	8088520	3R_8088520_SNP [dm3] 3R_12262798_SNP [dm6]	G	A	9.542e^-5	0.449	UTR_3_PRIME CG44037 INTRON svp
3R	8111141	3R_8111141_SNP [dm3] 3R_12285419_SNP [dm6]	T	A	9.542e^-5	0.449	INTRON svp
3L	17580001	3L_17580001_SNP [dm3] 3L_17586901_SNP [dm6]	T	A	9.545e^-5	0.449	INTRON Eip74EF
3L	21351188	3L_21351188_SNP [dm3] 3L_21358088_SNP [dm6]	A	G	9.659e^-5	0.449	SYNONYMOUS_CODING CG32437
X	16225203	X_16225203_SNP [dm3] X_16331170_SNP [dm6]	G	A	9.664e^-5	0.449	UPSTREAM CG9919 DOWNSTREAM CG9921 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16225097	X_16225097_SNP [dm3] X_16331064_SNP [dm6]	C	A	9.666e^-5	0.449	UPSTREAM CG9919 DOWNSTREAM CG9921 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17197601	3L_17197601_MNP [dm3] 3L_17204501_MNP [dm6]	CTT	ACG	9.672e^-5	0.449	INTRON Rbp6
3L	17197608	3L_17197608_SNP [dm3] 3L_17204508_SNP [dm6]	G	C	9.672e^-5	0.449	INTRON Rbp6
3L	1923705	3L_1923705_SNP [dm3] 3L_1923705_SNP [dm6]	C	G	9.672e^-5	0.449	INTRON Dbx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2793598	3L_2793598_SNP [dm3] 3L_2793598_SNP [dm6]	C	T	9.698e^-5	0.449	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3159466	2L_3159466_SNP [dm3] 2L_3159466_SNP [dm6]	C	T	9.699e^-5	0.449	UPSTREAM gkt INTRON Mad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	4757770	3L_4757770_SNP [dm3] 3L_4757770_SNP [dm6]	G	T	9.699e^-5	0.449	UPSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	27067008	3R_27067008_SNP [dm3] 3R_31241286_SNP [dm6]	T	A	9.845e^-5	0.449	INTRON qless
3R	11622361	3R_11622361_SNP [dm3] 3R_15796639_SNP [dm6]	C	T	9.898e^-5	0.449	NON_SYNONYMOUS_CODING nsl1	TF binding site mE1_TFBS_chinmo
2R	6873559	2R_6873559_SNP [dm3] 2R_10986054_SNP [dm6]	G	C	9.929e^-5	0.449	INTRON luna
X	1951815	X_1951815_SNP [dm3] X_2057782_SNP [dm6]	G	A	9.935e^-5	0.449	INTRON Sik2	TF binding site mE1_TFBS_chinmo
3R	4320943	3R_4320943_SNP [dm3] 3R_8495221_SNP [dm6]	C	A	9.963e^-5	0.449	INTERGENIC
3R	2621262	3R_2621262_SNP [dm3] 3R_6795540_SNP [dm6]	G	A	9.965e^-5	0.449	INTRON Dfd
2R	14156622	2R_14156622_SNP [dm3] 2R_18269117_SNP [dm6]	A	T	1.007e^-4	0.449	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13803043	2L_13803043_SNP [dm3] 2L_13803043_SNP [dm6]	T	A	1.009e^-4	0.449	UPSTREAM CAH1 INTERGENIC
2L	5815395	2L_5815395_SNP [dm3] 2L_5815395_SNP [dm6]	G	C	1.009e^-4	0.449	INTERGENIC
2L	5815416	2L_5815416_SNP [dm3] 2L_5815416_SNP [dm6]	C	G	1.009e^-4	0.449	INTERGENIC
2L	5815450	2L_5815450_SNP [dm3] 2L_5815450_SNP [dm6]	C	A	1.009e^-4	0.449	INTERGENIC
2R	17652700	2R_17652700_DEL [dm3] 2R_21765195_DEL [dm6]	TTTTT	T	1.009e^-4	0.449	UPSTREAM CG30395 DOWNSTREAM CG43982 EXON CR43984
2R	4238000	2R_4238000_SNP [dm3] 2R_8350495_SNP [dm6]	T	G	1.009e^-4	0.449	INTRON pdm3
3R	12902454	3R_12902454_SNP [dm3] 3R_17076732_SNP [dm6]	G	A	1.009e^-4	0.449	NON_SYNONYMOUS_CODING Keap1
3L	13872903	3L_13872903_SNP [dm3] 3L_13879803_SNP [dm6]	A	G	1.011e^-4	0.449	INTRON dysc & 1 other
2L	13954460	2L_13954460_SNP [dm3] 2L_13954460_SNP [dm6]	G	A	1.015e^-4	0.449	INTRON Ance-3
2L	15538338	2L_15538338_SNP [dm3] 2L_15538338_SNP [dm6]	T	A	1.015e^-4	0.449	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19641163	2L_19641163_SNP [dm3] 2L_19641163_SNP [dm6]	G	A	1.015e^-4	0.449	INTRON Lar
3L	17606783	3L_17606783_SNP [dm3] 3L_17613683_SNP [dm6]	C	T	1.015e^-4	0.449	INTRON Eip74EF	TF binding site BDTNP1_TFBS_z
2R	16193250	2R_16193250_SNP [dm3] 2R_20305745_SNP [dm6]	T	C	1.015e^-4	0.449	INTRON CG11200
2L	1120113	2L_1120113_SNP [dm3] 2L_1120113_SNP [dm6]	G	T	1.021e^-4	0.449	INTRON Pino	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1120114	2L_1120114_SNP [dm3] 2L_1120114_SNP [dm6]	G	T	1.021e^-4	0.449	INTRON Pino	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8156777	X_8156777_SNP [dm3] X_8262744_SNP [dm6]	C	A	1.023e^-4	0.449	INTRON CG1632
2R	16988619	2R_16988619_SNP [dm3] 2R_21101114_SNP [dm6]	A	T	1.027e^-4	0.449	NON_SYNONYMOUS_CODING CG34396 UPSTREAM ktub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	18697026	3R_18697026_SNP [dm3] 3R_22871304_SNP [dm6]	G	A	1.030e^-4	0.449	INTERGENIC
3L	21906221	3L_21906221_SNP [dm3] 3L_21913121_SNP [dm6]	T	C	1.031e^-4	0.449	INTRON mub	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	1.038e^-4	0.449	INTRON CG15270
2L	4252281	2L_4252281_SNP [dm3] 2L_4252281_SNP [dm6]	C	A	1.043e^-4	0.449	INTERGENIC
2L	4986224	2L_4986224_SNP [dm3] 2L_4986224_SNP [dm6]	C	G	1.043e^-4	0.449	NON_SYNONYMOUS_CODING CG34126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13023834	3L_13023834_SNP [dm3] 3L_13030734_SNP [dm6]	C	A	1.046e^-4	0.449	INTRON CG17672	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	17264047	2R_17264047_SNP [dm3] 2R_21376542_SNP [dm6]	A	C	1.046e^-4	0.449	INTRON cv-2
2R	16945733	2R_16945733_SNP [dm3] 2R_21058228_SNP [dm6]	T	C	1.050e^-4	0.449	SYNONYMOUS_CODING cpa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	1238674	3L_1238674_SNP [dm3] 3L_1238674_SNP [dm6]	T	C	1.053e^-4	0.449	UPSTREAM CG9192 INTRON CG9194	TF binding site mE1_TFBS_cnc
3R	16088159	3R_16088159_SNP [dm3] 3R_20262437_SNP [dm6]	T	C	1.059e^-4	0.449	INTRON cic	TF binding site mE1_TFBS_cad
3R	6651838	3R_6651838_DEL [dm3] 3R_10826116_DEL [dm6]	GCAAATCCAA	G	1.059e^-4	0.449	UPSTREAM Cad86C INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3741998	2L_3741998_SNP [dm3] 2L_3741998_SNP [dm6]	T	A	1.060e^-4	0.449	INTRON CG10019
3R	5441656	3R_5441656_SNP [dm3] 3R_9615934_SNP [dm6]	C	T	1.060e^-4	0.449	INTRON CG8312	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	6537586	3L_6537586_SNP [dm3] 3L_6544486_SNP [dm6]	G	C	1.061e^-4	0.449	SYNONYMOUS_CODING sfl
3L	1902188	3L_1902188_SNP [dm3] 3L_1902188_SNP [dm6]	G	A	1.073e^-4	0.453	UTR_3_PRIME CG1887 INTRON CG1887
X	5925061	X_5925061_SNP [dm3] X_6031028_SNP [dm6]	T	G	1.075e^-4	0.453	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16404438	X_16404438_SNP [dm3] X_16510405_SNP [dm6]	G	A	1.089e^-4	0.453	INTRON para
3R	2648934	3R_2648934_SNP [dm3] 3R_6823212_SNP [dm6]	C	G	1.094e^-4	0.453	UTR_3_PRIME Scr UPSTREAM tRNA:K5:84ABa DOWNSTREAM 7SLRNA:CR32864	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	24527091	3L_24527091_DEL [dm3] 3L_24533992_DEL [dm6]	ATAA	A	1.095e^-4	0.453	UPSTREAM CR12460 INTERGENIC
3L	14455543	3L_14455543_SNP [dm3] 3L_14462443_SNP [dm6]	A	G	1.095e^-4	0.453	INTRON bbg
3L	14455546	3L_14455546_SNP [dm3] 3L_14462446_SNP [dm6]	G	A	1.095e^-4	0.453	INTRON bbg
3L	14455550	3L_14455550_SNP [dm3] 3L_14462450_SNP [dm6]	A	G	1.095e^-4	0.453	INTRON bbg
3R	11299061	3R_11299061_SNP [dm3] 3R_15473339_SNP [dm6]	G	C	1.095e^-4	0.453	INTRON AdamTS-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	15377749	2R_15377749_SNP [dm3] 2R_19490244_SNP [dm6]	T	A	1.096e^-4	0.453	SYNONYMOUS_CODING Oseg6
2L	5162312	2L_5162312_SNP [dm3] 2L_5162312_SNP [dm6]	A	G	1.106e^-4	0.453	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_sens
3L	17590447	3L_17590447_SNP [dm3] 3L_17597347_SNP [dm6]	T	C	1.106e^-4	0.453	INTRON Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
X	10618298	X_10618298_SNP [dm3] X_10724265_SNP [dm6]	C	T	1.110e^-4	0.453	INTRON CG32676	TF binding site BDTNP1_TFBS_dl
X	10618333	X_10618333_SNP [dm3] X_10724300_SNP [dm6]	C	G	1.110e^-4	0.453	INTRON CG32676	TF binding site BDTNP1_TFBS_dl
3L	17576148	3L_17576148_INS [dm3] 3L_17583048_INS [dm6]	A	AT	1.116e^-4	0.453	INTRON Eip74EF	TF binding site mE1_TFBS_inv
3R	2576844	3R_2576844_SNP [dm3] 3R_6751122_SNP [dm6]	A	G	1.121e^-4	0.453	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17579982	3L_17579982_SNP [dm3] 3L_17586882_SNP [dm6]	G	T	1.122e^-4	0.453	INTRON Eip74EF
3R	22614541	3R_22614541_SNP [dm3] 3R_26788819_SNP [dm6]	A	G	1.122e^-4	0.453	INTERGENIC
2R	20341800	2R_20341800_SNP [dm3] 2R_24454277_SNP [dm6]	C	A	1.123e^-4	0.453	INTERGENIC
3R	23632255	3R_23632255_INS [dm3] 3R_27806533_INS [dm6]	T	TT	1.123e^-4	0.453	INTRON CG34353
2L	5463750	2L_5463750_SNP [dm3] 2L_5463750_SNP [dm6]	C	A	1.125e^-4	0.453	INTRON mid
X	12775266	X_12775266_SNP [dm3] X_12881233_SNP [dm6]	A	T	1.131e^-4	0.455	INTRON Pde9
2R	17402254	2R_17402254_SNP [dm3] 2R_21514749_SNP [dm6]	C	T	1.137e^-4	0.456	UTR_3_PRIME MESK2 INTRON MESK2	TF binding site mE1_TFBS_Trl
3R	17879440	3R_17879440_SNP [dm3] 3R_22053718_SNP [dm6]	T	A	1.141e^-4	0.456	INTRON how
2R	9929362	2R_9929362_SNP [dm3] 2R_14041857_SNP [dm6]	T	A	1.141e^-4	0.456	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	24424953	3R_24424953_SNP [dm3] 3R_28599231_SNP [dm6]	C	T	1.145e^-4	0.456	UTR_5_PRIME Noa36 UPSTREAM Hrb98DE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
X	14454506	X_14454506_SNP [dm3] X_14560473_SNP [dm6]	T	C	1.146e^-4	0.456	INTERGENIC
2R	16722649	2R_16722649_SNP [dm3] 2R_20835144_SNP [dm6]	C	T	1.150e^-4	0.456	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	1327761	2R_1327761_SNP [dm3] 2R_5440256_SNP [dm6]	T	C	1.154e^-4	0.456	INTRON laccase2
3R	1869107	3R_1869107_SNP [dm3] 3R_6043385_SNP [dm6]	A	G	1.156e^-4	0.456	INTERGENIC
3R	26623175	3R_26623175_SNP [dm3] 3R_30797453_SNP [dm6]	T	C	1.159e^-4	0.456	INTRON wts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20533859	3R_20533859_SNP [dm3] 3R_24708137_SNP [dm6]	T	G	1.159e^-4	0.456	UTR_3_PRIME slo DOWNSTREAM slo
3R	19159313	3R_19159313_SNP [dm3] 3R_23333591_SNP [dm6]	A	G	1.162e^-4	0.456	INTRON pnt
2R	4492159	2R_4492159_SNP [dm3] 2R_8604654_SNP [dm6]	G	A	1.173e^-4	0.457	INTRON rgr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	525197	2L_525197_SNP [dm3] 2L_525197_SNP [dm6]	C	T	1.184e^-4	0.457	INTRON ush	TF binding site mE1_TFBS_inv mE1_TFBS_Kr
2L	5733619	2L_5733619_INS [dm3] 2L_5733619_INS [dm6]	T	TT	1.184e^-4	0.457	DOWNSTREAM CG11147 INTRON CG11030
2L	5733666	2L_5733666_SNP [dm3] 2L_5733666_SNP [dm6]	C	T	1.184e^-4	0.457	DOWNSTREAM CG11147 INTRON CG11030
3L	9062094	3L_9062094_SNP [dm3] 3L_9068994_SNP [dm6]	C	G	1.184e^-4	0.457	UTR_3_PRIME CG4911 DOWNSTREAM CG4911	TF binding site mE1_TFBS_sens
3R	16089418	3R_16089418_SNP [dm3] 3R_20263696_SNP [dm6]	A	G	1.184e^-4	0.457	INTRON cic	TF binding site BDTNP1_TFBS_dl
3R	26141337	3R_26141337_DEL [dm3] 3R_30315615_DEL [dm6]	CC	C	1.184e^-4	0.457	INTRON hdc
2R	16690294	2R_16690294_SNP [dm3] 2R_20802789_SNP [dm6]	T	C	1.185e^-4	0.457	INTERGENIC
3R	2651620	3R_2651620_SNP [dm3] 3R_6825898_SNP [dm6]	G	A	1.191e^-4	0.458	INTRON Scr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	16813348	X_16813348_SNP [dm3] X_16919315_SNP [dm6]	C	T	1.194e^-4	0.458	INTRON CG4928
3R	25236273	3R_25236273_SNP [dm3] 3R_29410551_SNP [dm6]	G	T	1.197e^-4	0.458	INTRON Ptp99A
2R	18911986	2R_18911986_SNP [dm3] 2R_23024463_SNP [dm6]	G	C	1.198e^-4	0.458	INTRON twi & 1 other
X	21888213	X_21888213_SNP [dm3] X_22486377_SNP [dm6]	A	G	1.203e^-4	0.458	UPSTREAM l_1_G0196 DOWNSTREAM Cp110 INTRON Cp110	transposable element FlyBase
X	16225151	X_16225151_SNP [dm3] X_16331118_SNP [dm6]	A	C	1.203e^-4	0.458	UPSTREAM CG9919 DOWNSTREAM CG9921 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11108541	3L_11108541_SNP [dm3] 3L_11115441_SNP [dm6]	T	G	1.213e^-4	0.459	INTRON fd68A
3L	11108546	3L_11108546_SNP [dm3] 3L_11115446_SNP [dm6]	G	T	1.213e^-4	0.459	INTRON fd68A
2L	13824575	2L_13824575_SNP [dm3] 2L_13824575_SNP [dm6]	T	G	1.214e^-4	0.459	SYNONYMOUS_CODING tam DOWNSTREAM b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12001628	X_12001628_SNP [dm3] X_12107595_SNP [dm6]	C	T	1.223e^-4	0.46	SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other
X	8285258	X_8285258_SNP [dm3] X_8391225_SNP [dm6]	T	C	1.223e^-4	0.46	INTERGENIC
3L	14177968	3L_14177968_SNP [dm3] 3L_14184868_SNP [dm6]	T	C	1.227e^-4	0.46	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18209202	3L_18209202_SNP [dm3] 3L_18216102_SNP [dm6]	A	T	1.228e^-4	0.46	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17626162	3L_17626162_SNP [dm3] 3L_17633062_SNP [dm6]	G	A	1.242e^-4	0.463	UPSTREAM CG7497 DOWNSTREAM CR44566 EXON CR44567
3L	16033062	3L_16033062_SNP [dm3] 3L_16039962_SNP [dm6]	C	T	1.242e^-4	0.463	SYNONYMOUS_CODING th	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3L	5328388	3L_5328388_SNP [dm3] 3L_5335288_SNP [dm6]	T	A	1.254e^-4	0.467	DOWNSTREAM CR45742 INTERGENIC
3R	17697040	3R_17697040_SNP [dm3] 3R_21871318_SNP [dm6]	G	C	1.259e^-4	0.467	UPSTREAM CG31431 INTRON CG31431	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16193415	2R_16193415_SNP [dm3] 2R_20305910_SNP [dm6]	A	G	1.280e^-4	0.467	INTRON CG11200
3L	18973454	3L_18973454_SNP [dm3] 3L_18980354_SNP [dm6]	T	C	1.281e^-4	0.467	DOWNSTREAM CR45689 INTERGENIC
3R	10417843	3R_10417843_SNP [dm3] 3R_14592121_SNP [dm6]	A	C	1.282e^-4	0.467	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17287628	2L_17287628_DEL [dm3] 2L_17287628_DEL [dm6]	ACA	A	1.284e^-4	0.467	UTR_3_PRIME CG15140
2R	20376045	2R_20376045_SNP [dm3] 2R_24488522_SNP [dm6]	G	A	1.289e^-4	0.467	INTRON CG13579	TF binding site mE1_TFBS_chinmo
2L	9336669	2L_9336669_SNP [dm3] 2L_9336669_SNP [dm6]	C	T	1.292e^-4	0.467	INTRON Eaat1
3R	26218192	3R_26218192_SNP [dm3] 3R_30392470_SNP [dm6]	T	A	1.296e^-4	0.467	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26218194	3R_26218194_SNP [dm3] 3R_30392472_SNP [dm6]	A	G	1.296e^-4	0.467	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21497137	3R_21497137_SNP [dm3] 3R_25671415_SNP [dm6]	T	C	1.297e^-4	0.467	INTRON Lgr3
X	5544474	X_5544474_SNP [dm3] X_5650441_SNP [dm6]	G	A	1.300e^-4	0.467	DOWNSTREAM CG42265 INTERGENIC
X	2888358	X_2888358_SNP [dm3] X_2994325_SNP [dm6]	C	G	1.302e^-4	0.467	INTRON kirre	TF binding site mE1_TFBS_HSA
3L	7032386	3L_7032386_SNP [dm3] 3L_7039286_SNP [dm6]	G	T	1.309e^-4	0.467	INTRON Mp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10171631	3R_10171631_SNP [dm3] 3R_14345909_SNP [dm6]	C	T	1.311e^-4	0.467	INTRON NK7.1
3R	8093492	3R_8093492_SNP [dm3] 3R_12267770_SNP [dm6]	C	T	1.312e^-4	0.467	INTRON svp
2R	12045101	2R_12045101_SNP [dm3] 2R_16157596_SNP [dm6]	A	G	1.314e^-4	0.467	NON_SYNONYMOUS_CODING CG10734 INTRON lbk
X	4328104	X_4328104_SNP [dm3] X_4434071_SNP [dm6]	A	C	1.323e^-4	0.467	INTRON CR32773 & 1 other
X	16225172	X_16225172_SNP [dm3] X_16331139_SNP [dm6]	G	C	1.324e^-4	0.467	UPSTREAM CG9919 DOWNSTREAM CG9921 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15714155	2R_15714155_SNP [dm3] 2R_19826650_SNP [dm6]	A	G	1.328e^-4	0.467	UTR_5_PRIME Toll-7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	5162297	2L_5162297_SNP [dm3] 2L_5162297_SNP [dm6]	A	C	1.328e^-4	0.467	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_sens
2R	1351153	2R_1351153_SNP [dm3] 2R_5463648_SNP [dm6]	A	G	1.328e^-4	0.467	INTERGENIC	TF binding site mE1_TFBS_sens
3L	17579972	3L_17579972_SNP [dm3] 3L_17586872_SNP [dm6]	A	C	1.330e^-4	0.467	INTRON Eip74EF
3L	17579975	3L_17579975_SNP [dm3] 3L_17586875_SNP [dm6]	A	T	1.330e^-4	0.467	INTRON Eip74EF
3L	17579978	3L_17579978_SNP [dm3] 3L_17586878_SNP [dm6]	G	C	1.330e^-4	0.467	INTRON Eip74EF
3L	17579996	3L_17579996_DEL [dm3] 3L_17586896_DEL [dm6]	TA	T	1.330e^-4	0.467	INTRON Eip74EF
3L	17580000	3L_17580000_SNP [dm3] 3L_17586900_SNP [dm6]	T	A	1.330e^-4	0.467	INTRON Eip74EF
3L	17580005	3L_17580005_DEL [dm3] 3L_17586905_DEL [dm6]	TG	T	1.330e^-4	0.467	INTRON Eip74EF
3L	17613150	3L_17613150_SNP [dm3] 3L_17620050_SNP [dm6]	G	T	1.339e^-4	0.467	UPSTREAM Eip74EF DOWNSTREAM CG6259 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17333697	2L_17333697_SNP [dm3] 2L_17333697_SNP [dm6]	C	T	1.340e^-4	0.467	INTERGENIC
2R	6096372	2R_6096372_SNP [dm3] 2R_10208867_SNP [dm6]	G	A	1.342e^-4	0.467	INTRON Hr46 & 1 other
3L	24498124	3L_24498124_SNP [dm3] 3L_24505024_SNP [dm6]	G	A	1.342e^-4	0.467	INTERGENIC
3L	24508875	3L_24508875_SNP [dm3] 3L_24515775_SNP [dm6]	T	G	1.342e^-4	0.467	INTERGENIC
2R	15377592	2R_15377592_SNP [dm3] 2R_19490087_SNP [dm6]	T	C	1.345e^-4	0.467	INTRON Oseg6
3L	8977004	3L_8977004_SNP [dm3] 3L_8983904_SNP [dm6]	T	G	1.346e^-4	0.467	DOWNSTREAM CG13314 INTRON Galk	TF binding site mE1_TFBS_HSA
3R	6691066	3R_6691066_SNP [dm3] 3R_10865344_SNP [dm6]	G	A	1.347e^-4	0.467	UTR_3_PRIME SelR INTRON SelR
X	2274456	X_2274456_SNP [dm3] X_2380423_SNP [dm6]	G	T	1.350e^-4	0.467	DOWNSTREAM PsGEF INTRON PsGEF
3R	14883176	3R_14883176_SNP [dm3] 3R_19057454_SNP [dm6]	A	C	1.357e^-4	0.467	INTRON cdi
X	5440946	X_5440946_SNP [dm3] X_5546913_SNP [dm6]	T	C	1.358e^-4	0.467	NON_SYNONYMOUS_CODING Vsx2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4895759	X_4895759_SNP [dm3] X_5001726_SNP [dm6]	A	C	1.361e^-4	0.467	INTRON CR44833	regulatory region REDfly_CRMs
2R	16965207	2R_16965207_DEL [dm3] 2R_21077702_DEL [dm6]	GA	G	1.362e^-4	0.467	INTRON Treh
X	16464489	X_16464489_SNP [dm3] X_16570456_SNP [dm6]	A	G	1.365e^-4	0.467	INTRON CanA-14F
2L	9971465	2L_9971465_SNP [dm3] 2L_9971465_SNP [dm6]	G	T	1.374e^-4	0.467	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16294815	3R_16294815_SNP [dm3] 3R_20469093_SNP [dm6]	G	A	1.388e^-4	0.467	INTRON Gfrl
3R	16294985	3R_16294985_SNP [dm3] 3R_20469263_SNP [dm6]	T	A	1.388e^-4	0.467	INTRON Gfrl
3R	25323545	3R_25323545_SNP [dm3] 3R_29497823_SNP [dm6]	C	G	1.391e^-4	0.467	SYNONYMOUS_CODING CG2010	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	6460069	2R_6460069_SNP [dm3] 2R_10572564_SNP [dm6]	A	G	1.401e^-4	0.467	INTRON psq
2L	5386985	2L_5386985_SNP [dm3] 2L_5386985_SNP [dm6]	G	A	1.410e^-4	0.467	UPSTREAM CR44745 INTERGENIC	TF binding site mE1_TFBS_inv
3L	4664801	3L_4664801_SNP [dm3] 3L_4664801_SNP [dm6]	A	G	1.410e^-4	0.467	SYNONYMOUS_CODING axo
3L	7601186	3L_7601186_SNP [dm3] 3L_7608086_SNP [dm6]	T	C	1.410e^-4	0.467	INTRON CG33275	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10143454	X_10143454_SNP [dm3] X_10249421_SNP [dm6]	A	G	1.410e^-4	0.467	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10143477	X_10143477_SNP [dm3] X_10249444_SNP [dm6]	A	C	1.410e^-4	0.467	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10143563	X_10143563_SNP [dm3] X_10249530_SNP [dm6]	T	C	1.410e^-4	0.467	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10143574	X_10143574_SNP [dm3] X_10249541_SNP [dm6]	G	A	1.410e^-4	0.467	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10143593	X_10143593_SNP [dm3] X_10249560_SNP [dm6]	T	C	1.410e^-4	0.467	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10143620	X_10143620_SNP [dm3] X_10249587_SNP [dm6]	G	T	1.410e^-4	0.467	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10143621	X_10143621_SNP [dm3] X_10249588_SNP [dm6]	A	G	1.410e^-4	0.467	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10143646	X_10143646_SNP [dm3] X_10249613_SNP [dm6]	A	T	1.410e^-4	0.467	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10143695	X_10143695_SNP [dm3] X_10249662_SNP [dm6]	T	A	1.410e^-4	0.467	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22091916	3R_22091916_SNP [dm3] 3R_26266194_SNP [dm6]	T	C	1.411e^-4	0.467	INTRON CG6154
X	1952525	X_1952525_SNP [dm3] X_2058492_SNP [dm6]	G	A	1.411e^-4	0.467	SYNONYMOUS_CODING Sik2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16909720	2L_16909720_SNP [dm3] 2L_16909720_SNP [dm6]	G	A	1.425e^-4	0.469	SYNONYMOUS_CODING ApepP INTRON tweek	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13742990	X_13742990_SNP [dm3] X_13848957_SNP [dm6]	G	A	1.426e^-4	0.469	UTR_3_PRIME mamo
2R	19786440	2R_19786440_SNP [dm3] 2R_23898917_SNP [dm6]	G	A	1.428e^-4	0.469	NON_SYNONYMOUS_CODING Lpt UPSTREAM CG5339	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8397972	2R_8397972_SNP [dm3] 2R_12510467_SNP [dm6]	C	T	1.430e^-4	0.469	UTR_5_PRIME vis INTRON vis	TF binding site mE1_TFBS_inv
3L	14169041	3L_14169041_SNP [dm3] 3L_14175941_SNP [dm6]	A	C	1.433e^-4	0.469	UTR_3_PRIME D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_h
3R	14611645	3R_14611645_DEL [dm3] 3R_18785923_DEL [dm6]	CTCATCGCTAACTATTTATT...	C	1.434e^-4	0.469	INTRON CG7720
2L	909370	2L_909370_SNP [dm3] 2L_909370_SNP [dm6]	G	A	1.442e^-4	0.469	INTERGENIC
3R	2625595	3R_2625595_SNP [dm3] 3R_6799873_SNP [dm6]	C	T	1.445e^-4	0.469	INTRON Dfd	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cnc
2R	17487578	2R_17487578_SNP [dm3] 2R_21600073_SNP [dm6]	G	A	1.446e^-4	0.469	INTERGENIC
2R	4532488	2R_4532488_INS [dm3] 2R_8644983_INS [dm6]	T	TTATG	1.452e^-4	0.469	INTERGENIC
3L	14177958	3L_14177958_SNP [dm3] 3L_14184858_SNP [dm6]	T	C	1.460e^-4	0.469	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20478904	3R_20478904_SNP [dm3] 3R_24653182_SNP [dm6]	T	C	1.461e^-4	0.469	SYNONYMOUS_CODING ash2 DOWNSTREAM CG31125
3L	14490333	3L_14490333_SNP [dm3] 3L_14497233_SNP [dm6]	T	C	1.463e^-4	0.469	INTRON bbg
3L	5328768	3L_5328768_SNP [dm3] 3L_5335668_SNP [dm6]	T	A	1.464e^-4	0.469	DOWNSTREAM CR45742 INTERGENIC
3R	20330930	3R_20330930_SNP [dm3] 3R_24505208_SNP [dm6]	A	G	1.469e^-4	0.469	INTERGENIC
2L	17458367	2L_17458367_SNP [dm3] 2L_17458367_SNP [dm6]	G	A	1.471e^-4	0.469	UPSTREAM CG18563 INTRON CG5050	transposable element FlyBase
3L	14468657	3L_14468657_SNP [dm3] 3L_14475557_SNP [dm6]	T	C	1.472e^-4	0.469	INTRON bbg
3L	14468667	3L_14468667_SNP [dm3] 3L_14475567_SNP [dm6]	G	A	1.472e^-4	0.469	INTRON bbg
3L	14468811	3L_14468811_SNP [dm3] 3L_14475711_SNP [dm6]	A	T	1.472e^-4	0.469	INTRON bbg
2L	18485814	2L_18485814_SNP [dm3] 2L_18485814_SNP [dm6]	G	T	1.475e^-4	0.469	UTR_5_PRIME CG10176	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad
2L	18485815	2L_18485815_SNP [dm3] 2L_18485815_SNP [dm6]	A	G	1.475e^-4	0.469	UTR_5_PRIME CG10176	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad
X	16464345	X_16464345_SNP [dm3] X_16570312_SNP [dm6]	A	C	1.477e^-4	0.469	UPSTREAM CanA-14F INTRON CanA-14F
3R	2538500	3R_2538500_SNP [dm3] 3R_6712778_SNP [dm6]	G	A	1.484e^-4	0.47	INTRON pb	regulatory region REDfly_CRMs
3L	11191321	3L_11191321_SNP [dm3] 3L_11198221_SNP [dm6]	A	C	1.487e^-4	0.47	UTR_3_PRIME Plod UPSTREAM GlcAT-P
2R	12223649	2R_12223649_SNP [dm3] 2R_16336144_SNP [dm6]	G	A	1.495e^-4	0.472	UTR_5_PRIME Hmgs UPSTREAM Hmgs INTRON Vha44	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	8615037	2R_8615037_SNP [dm3] 2R_12727532_SNP [dm6]	A	C	1.496e^-4	0.472	INTRON CG42663
2R	5081145	2R_5081145_SNP [dm3] 2R_9193640_SNP [dm6]	A	G	1.500e^-4	0.472	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16377886	2L_16377886_SNP [dm3] 2L_16377886_SNP [dm6]	C	T	1.504e^-4	0.473	INTERGENIC
2L	6982595	2L_6982595_SNP [dm3] 2L_6982595_SNP [dm6]	A	G	1.507e^-4	0.473	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9805697	2R_9805697_SNP [dm3] 2R_13918192_SNP [dm6]	C	T	1.514e^-4	0.473	INTRON shot
3L	12996278	3L_12996278_SNP [dm3] 3L_13003178_SNP [dm6]	A	C	1.516e^-4	0.473	INTERGENIC
2L	17301333	2L_17301333_SNP [dm3] 2L_17301333_SNP [dm6]	C	T	1.521e^-4	0.473	INTERGENIC
3L	6097426	3L_6097426_SNP [dm3] 3L_6104326_SNP [dm6]	A	G	1.521e^-4	0.473	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18253104	3R_18253104_SNP [dm3] 3R_22427382_SNP [dm6]	C	T	1.522e^-4	0.473	SYNONYMOUS_CODING CG13847	TF binding site mE1_TFBS_chinmo
2R	4578870	2R_4578870_SNP [dm3] 2R_8691365_SNP [dm6]	A	G	1.539e^-4	0.478	UPSTREAM Jon44E INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5402819	2R_5402819_SNP [dm3] 2R_9515314_SNP [dm6]	C	A	1.552e^-4	0.481	INTRON brp	TF binding site mE1_TFBS_chinmo
3R	25812483	3R_25812483_SNP [dm3] 3R_29986761_SNP [dm6]	A	G	1.554e^-4	0.481	INTRON CG7896	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	16824861	2R_16824861_DEL [dm3] 2R_20937356_DEL [dm6]	TTAAATGCAAT...	T	1.564e^-4	0.482	DOWNSTREAM Rx INTERGENIC
X	2272724	X_2272724_SNP [dm3] X_2378691_SNP [dm6]	T	G	1.568e^-4	0.482	SYNONYMOUS_CODING PsGEF INTRON PsGEF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17674825	X_17674825_SNP [dm3] X_17780792_SNP [dm6]	C	G	1.571e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17674879	X_17674879_SNP [dm3] X_17780846_SNP [dm6]	A	G	1.571e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17652537	2R_17652537_SNP [dm3] 2R_21765032_SNP [dm6]	A	C	1.574e^-4	0.482	UPSTREAM CG30395 DOWNSTREAM CG43982 EXON CR43984	TF binding site BDTNP1_TFBS_dl
2L	7208111	2L_7208111_SNP [dm3] 2L_7208111_SNP [dm6]	T	C	1.589e^-4	0.486	INTRON CG13784
2R	12257754	2R_12257754_SNP [dm3] 2R_16370249_SNP [dm6]	A	C	1.593e^-4	0.487	INTERGENIC
X	5925033	X_5925033_SNP [dm3] X_6031000_SNP [dm6]	G	T	1.600e^-4	0.488	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	13207437	X_13207437_SNP [dm3] X_13313404_SNP [dm6]	T	C	1.621e^-4	0.493	INTRON IP3K2
3L	6537561	3L_6537561_SNP [dm3] 3L_6544461_SNP [dm6]	C	A	1.623e^-4	0.493	SPLICE_SITE_REGION sfl INTRON sfl
3L	17575460	3L_17575460_SNP [dm3] 3L_17582360_SNP [dm6]	G	A	1.635e^-4	0.496	INTRON Eip74EF
X	16464234	X_16464234_SNP [dm3] X_16570201_SNP [dm6]	G	A	1.660e^-4	0.501	UPSTREAM CanA-14F INTRON CanA-14F
2R	16685844	2R_16685844_SNP [dm3] 2R_20798339_SNP [dm6]	C	T	1.661e^-4	0.501	INTERGENIC
3R	19101772	3R_19101772_SNP [dm3] 3R_23276050_SNP [dm6]	A	G	1.662e^-4	0.501	INTRON orb
3R	2619128	3R_2619128_SNP [dm3] 3R_6793406_SNP [dm6]	C	A	1.666e^-4	0.501	INTRON Dfd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18365542	3R_18365542_SNP [dm3] 3R_22539820_SNP [dm6]	A	G	1.668e^-4	0.501	UTR_5_PRIME CG5326 UPSTREAM CR45646
2R	6999376	2R_6999376_SNP [dm3] 2R_11111871_SNP [dm6]	A	G	1.670e^-4	0.501	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	11099820	3R_11099820_SNP [dm3] 3R_15274098_SNP [dm6]	G	T	1.675e^-4	0.502	INTRON Cp190	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	18691831	3R_18691831_SNP [dm3] 3R_22866109_SNP [dm6]	C	T	1.686e^-4	0.505	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4356444	2L_4356444_SNP [dm3] 2L_4356444_SNP [dm6]	A	T	1.696e^-4	0.506	INTERGENIC
2L	4356464	2L_4356464_SNP [dm3] 2L_4356464_SNP [dm6]	G	A	1.696e^-4	0.506	INTERGENIC
3R	13936609	3R_13936609_SNP [dm3] 3R_18110887_SNP [dm6]	G	A	1.701e^-4	0.506	INTRON sr
2L	2425273	2L_2425273_SNP [dm3] 2L_2425273_SNP [dm6]	G	T	1.707e^-4	0.506	DOWNSTREAM CG9886 & 1 other INTERGENIC
2L	528770	2L_528770_SNP [dm3] 2L_528770_SNP [dm6]	T	C	1.707e^-4	0.506	INTRON ush	regulatory region REDfly_CRMs
2L	13908792	2L_13908792_SNP [dm3] 2L_13908792_SNP [dm6]	A	C	1.714e^-4	0.507	SPLICE_SITE_REGION Ance UPSTREAM Ance-2 INTRON Ance	TF binding site mE1_TFBS_cad
3L	18417190	3L_18417190_SNP [dm3] 3L_18424090_SNP [dm6]	T	C	1.715e^-4	0.507	INTERGENIC
3R	26793718	3R_26793718_SNP [dm3] 3R_30967996_SNP [dm6]	A	T	1.718e^-4	0.507	DOWNSTREAM 5-HT7 INTERGENIC
3R	27170034	3R_27170034_SNP [dm3] 3R_31344312_SNP [dm6]	A	T	1.742e^-4	0.514	INTRON CG34347
2R	5805353	2R_5805353_INS [dm3] 2R_9917848_INS [dm6]	A	AA	1.746e^-4	0.514	INTRON Mef2	TF binding site mE1_TFBS_HSA
2L	7233203	2L_7233203_SNP [dm3] 2L_7233203_SNP [dm6]	T	C	1.752e^-4	0.515	UPSTREAM CG43800 INTRON Ndae1	transposable element FlyBase
X	2273162	X_2273162_SNP [dm3] X_2379129_SNP [dm6]	A	G	1.754e^-4	0.515	SYNONYMOUS_CODING PsGEF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2625213	3R_2625213_SNP [dm3] 3R_6799491_SNP [dm6]	G	A	1.762e^-4	0.516	INTRON Dfd	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	14163509	X_14163509_SNP [dm3] X_14269476_SNP [dm6]	G	A	1.766e^-4	0.516	INTRON na
3R	26163350	3R_26163350_SNP [dm3] 3R_30337628_SNP [dm6]	G	A	1.774e^-4	0.518	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6111561	2R_6111561_SNP [dm3] 2R_10224056_SNP [dm6]	C	A	1.782e^-4	0.519	INTRON Hr46 & 1 other
3L	5440960	3L_5440960_SNP [dm3] 3L_5447860_SNP [dm6]	T	C	1.798e^-4	0.523	INTERGENIC
2L	7081448	2L_7081448_SNP [dm3] 2L_7081448_SNP [dm6]	C	A	1.805e^-4	0.523	INTRON Pvf2
3R	26279792	3R_26279792_SNP [dm3] 3R_30454070_SNP [dm6]	C	G	1.811e^-4	0.523	UPSTREAM aralar1 INTRON aralar1
3R	26279796	3R_26279796_SNP [dm3] 3R_30454074_SNP [dm6]	A	G	1.811e^-4	0.523	UPSTREAM aralar1 INTRON aralar1
3L	17580827	3L_17580827_SNP [dm3] 3L_17587727_SNP [dm6]	A	G	1.811e^-4	0.523	INTRON Eip74EF
2L	6665938	2L_6665938_SNP [dm3] 2L_6665938_SNP [dm6]	T	G	1.812e^-4	0.523	DOWNSTREAM Galt INTRON cup & 1 other
2L	508340	2L_508340_SNP [dm3] 2L_508340_SNP [dm6]	T	G	1.824e^-4	0.524	INTRON ush
X	3327208	X_3327208_SNP [dm3] X_3433175_SNP [dm6]	A	G	1.842e^-4	0.524	INTRON CR44999 & 1 other
2R	9073389	2R_9073389_SNP [dm3] 2R_13185884_SNP [dm6]	A	G	1.848e^-4	0.524	SYNONYMOUS_CODING Kdm4B UTR_5_PRIME CG17724 UPSTREAM CG17724 INTRON seq & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4082342	3L_4082342_SNP [dm3] 3L_4082342_SNP [dm6]	A	G	1.853e^-4	0.524	INTRON Gad1
3R	2685287	3R_2685287_SNP [dm3] 3R_6859565_SNP [dm6]	C	T	1.858e^-4	0.524	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	837603	3L_837603_SNP [dm3] 3L_837603_SNP [dm6]	C	T	1.859e^-4	0.524	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	8117225	2R_8117225_SNP [dm3] 2R_12229720_SNP [dm6]	C	A	1.863e^-4	0.524	UPSTREAM CG8854 INTERGENIC
2R	13657696	2R_13657696_SNP [dm3] 2R_17770191_SNP [dm6]	C	T	1.876e^-4	0.524	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11408920	3L_11408920_INS [dm3] 3L_11415820_INS [dm6]	G	GATGGGT	1.878e^-4	0.524	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	14501099	3L_14501099_SNP [dm3] 3L_14507999_SNP [dm6]	T	C	1.884e^-4	0.524	SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13909238	2L_13909238_SNP [dm3] 2L_13909238_SNP [dm6]	T	C	1.891e^-4	0.524	UPSTREAM Ance-2 DOWNSTREAM Ance INTERGENIC
X	21433452	X_21433452_INS [dm3] X_21562425_INS [dm6]	T	TTTCAATAT	1.893e^-4	0.524	INTERGENIC
3R	23746905	3R_23746905_SNP [dm3] 3R_27921183_SNP [dm6]	A	G	1.902e^-4	0.524	UPSTREAM CG12259 DOWNSTREAM BCAS2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1925994	3L_1925994_SNP [dm3] 3L_1925994_SNP [dm6]	A	G	1.907e^-4	0.524	DOWNSTREAM tRNA:CR32312 INTRON Dbx
3L	1926009	3L_1926009_SNP [dm3] 3L_1926009_SNP [dm6]	C	T	1.907e^-4	0.524	DOWNSTREAM tRNA:CR32312 INTRON Dbx
X	15373979	X_15373979_SNP [dm3] X_15479946_SNP [dm6]	A	C	1.907e^-4	0.524	NON_SYNONYMOUS_CODING CG6324	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12001644	X_12001644_SNP [dm3] X_12107611_SNP [dm6]	G	T	1.908e^-4	0.524	NON_SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other
3R	5344611	3R_5344611_SNP [dm3] 3R_9518889_SNP [dm6]	C	T	1.909e^-4	0.524	SYNONYMOUS_CODING JHDM2 INTRON CG8176	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9390497	2L_9390497_SNP [dm3] 2L_9390497_SNP [dm6]	C	T	1.911e^-4	0.524	SYNONYMOUS_CODING Aldh INTRON Shawl	TF binding site mE1_TFBS_chinmo
2R	12257577	2R_12257577_SNP [dm3] 2R_16370072_SNP [dm6]	T	C	1.911e^-4	0.524	INTERGENIC
3R	16289871	3R_16289871_SNP [dm3] 3R_20464149_SNP [dm6]	A	C	1.913e^-4	0.524	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	16289881	3R_16289881_SNP [dm3] 3R_20464159_SNP [dm6]	T	G	1.913e^-4	0.524	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	16289922	3R_16289922_SNP [dm3] 3R_20464200_SNP [dm6]	C	T	1.913e^-4	0.524	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	16289936	3R_16289936_SNP [dm3] 3R_20464214_SNP [dm6]	A	G	1.913e^-4	0.524	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	16290115	3R_16290115_SNP [dm3] 3R_20464393_SNP [dm6]	G	T	1.913e^-4	0.524	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	16290212	3R_16290212_SNP [dm3] 3R_20464490_SNP [dm6]	A	C	1.913e^-4	0.524	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	16290325	3R_16290325_SNP [dm3] 3R_20464603_SNP [dm6]	T	G	1.913e^-4	0.524	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	16290412	3R_16290412_SNP [dm3] 3R_20464690_SNP [dm6]	C	T	1.913e^-4	0.524	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	14752121	X_14752121_SNP [dm3] X_14858088_SNP [dm6]	G	T	1.913e^-4	0.524	INTRON Flo2
2R	6642121	2R_6642121_SNP [dm3] 2R_10754616_SNP [dm6]	C	A	1.920e^-4	0.524	INTRON CG33144
2L	17281577	2L_17281577_SNP [dm3] 2L_17281577_SNP [dm6]	T	C	1.924e^-4	0.524	INTERGENIC
3R	16290200	3R_16290200_SNP [dm3] 3R_20464478_SNP [dm6]	A	G	1.933e^-4	0.524	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	16290202	3R_16290202_SNP [dm3] 3R_20464480_SNP [dm6]	C	A	1.933e^-4	0.524	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	10012867	3R_10012867_DEL [dm3] 3R_14187145_DEL [dm6]	CCGGCTTGACTGCCTGC...	C	1.933e^-4	0.524	INTRON Dop1R1
X	18431189	X_18431189_SNP [dm3] X_18537156_SNP [dm6]	A	T	1.934e^-4	0.524	INTRON Bx
2R	18586714	2R_18586714_SNP [dm3] 2R_22699209_SNP [dm6]	C	G	1.936e^-4	0.524	SYNONYMOUS_CODING robo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17601876	3L_17601876_DEL [dm3] 3L_17608776_DEL [dm6]	TGTTT	T	1.943e^-4	0.524	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17601888	3L_17601888_SNP [dm3] 3L_17608788_SNP [dm6]	C	T	1.943e^-4	0.524	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17601898	3L_17601898_SNP [dm3] 3L_17608798_SNP [dm6]	G	A	1.943e^-4	0.524	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17601899	3L_17601899_SNP [dm3] 3L_17608799_SNP [dm6]	C	A	1.943e^-4	0.524	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	19688061	3L_19688061_SNP [dm3] 3L_19694961_SNP [dm6]	C	T	1.943e^-4	0.524	INTRON verm
3R	10164801	3R_10164801_SNP [dm3] 3R_14339079_SNP [dm6]	C	T	1.943e^-4	0.524	INTRON NK7.1
3R	9994403	3R_9994403_SNP [dm3] 3R_14168681_SNP [dm6]	A	C	1.943e^-4	0.524	UTR_3_PRIME Dop1R1
3L	3864491	3L_3864491_SNP [dm3] 3L_3864491_SNP [dm6]	A	G	1.948e^-4	0.524	UPSTREAM CR45379 INTERGENIC
X	18431196	X_18431196_DEL [dm3] X_18537163_DEL [dm6]	GCTG	G	1.955e^-4	0.525	INTRON Bx
3R	11003845	3R_11003845_SNP [dm3] 3R_15178123_SNP [dm6]	T	C	1.961e^-4	0.526	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
X	18438149	X_18438149_SNP [dm3] X_18544116_SNP [dm6]	T	G	1.969e^-4	0.528	INTRON Bx
3L	13026982	3L_13026982_SNP [dm3] 3L_13033882_SNP [dm6]	A	G	1.987e^-4	0.531	UPSTREAM CR45157 INTRON CG17672
3R	18458646	3R_18458646_SNP [dm3] 3R_22632924_SNP [dm6]	C	T	1.991e^-4	0.531	UTR_5_PRIME loco INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15377860	2R_15377860_SNP [dm3] 2R_19490355_SNP [dm6]	C	T	1.991e^-4	0.531	SYNONYMOUS_CODING Oseg6	TF binding site mE1_TFBS_inv
3R	2640136	3R_2640136_SNP [dm3] 3R_6814414_SNP [dm6]	G	T	1.996e^-4	0.531	INTRON CR42651	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	3180689	2L_3180689_SNP [dm3] 2L_3180689_SNP [dm6]	A	C	1.998e^-4	0.531	INTRON CG34393
3R	12872197	3R_12872197_SNP [dm3] 3R_17046475_SNP [dm6]	T	A	2.000e^-4	0.531	INTRON Patr-1
2R	16610851	2R_16610851_SNP [dm3] 2R_20723346_SNP [dm6]	A	G	2.009e^-4	0.533	DOWNSTREAM CR44660 INTRON dpr
3L	5841210	3L_5841210_SNP [dm3] 3L_5848110_SNP [dm6]	T	C	2.027e^-4	0.536	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	1864150	3R_1864150_SNP [dm3] 3R_6038428_SNP [dm6]	C	A	2.029e^-4	0.536	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9989557	3L_9989557_SNP [dm3] 3L_9996457_SNP [dm6]	G	A	2.035e^-4	0.537	INTRON dpr6
3R	23312617	3R_23312617_SNP [dm3] 3R_27486895_SNP [dm6]	T	G	2.057e^-4	0.538	INTERGENIC
3R	23312623	3R_23312623_DEL [dm3] 3R_27486901_DEL [dm6]	TG	T	2.057e^-4	0.538	INTERGENIC
3R	23312626	3R_23312626_DEL [dm3] 3R_27486904_DEL [dm6]	AAATCGTTTTG...	A	2.057e^-4	0.538	INTERGENIC
3R	23312641	3R_23312641_SNP [dm3] 3R_27486919_SNP [dm6]	T	C	2.057e^-4	0.538	INTERGENIC
3R	23312643	3R_23312643_DEL [dm3] 3R_27486921_DEL [dm6]	TTTGGTAAG	T	2.057e^-4	0.538	UPSTREAM Gr98a INTERGENIC
3R	23312662	3R_23312662_DEL [dm3] 3R_27486940_DEL [dm6]	TC	T	2.057e^-4	0.538	UPSTREAM Gr98a INTERGENIC
2L	2397722	2L_2397722_SNP [dm3] 2L_2397722_SNP [dm6]	A	C	2.066e^-4	0.539	INTRON VGlut
X	10143581	X_10143581_SNP [dm3] X_10249548_SNP [dm6]	C	T	2.067e^-4	0.539	INTRON Hk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12257560	2R_12257560_SNP [dm3] 2R_16370055_SNP [dm6]	T	G	2.074e^-4	0.54	INTERGENIC
3L	17578291	3L_17578291_SNP [dm3] 3L_17585191_SNP [dm6]	T	G	2.093e^-4	0.543	INTRON Eip74EF
3L	17578294	3L_17578294_SNP [dm3] 3L_17585194_SNP [dm6]	G	C	2.093e^-4	0.543	INTRON Eip74EF
X	10278960	X_10278960_SNP [dm3] X_10384927_SNP [dm6]	T	G	2.095e^-4	0.543	INTRON Psf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Ubx
2R	17834155	2R_17834155_SNP [dm3] 2R_21946650_SNP [dm6]	G	A	2.106e^-4	0.544	DOWNSTREAM Fili INTERGENIC
3R	2670228	3R_2670228_SNP [dm3] 3R_6844506_SNP [dm6]	A	T	2.115e^-4	0.544	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	563192	3L_563192_SNP [dm3] 3L_563192_SNP [dm6]	T	A	2.119e^-4	0.544	INTRON hipk
3L	563194	3L_563194_SNP [dm3] 3L_563194_SNP [dm6]	C	G	2.119e^-4	0.544	INTRON hipk
3L	9062242	3L_9062242_SNP [dm3] 3L_9069142_SNP [dm6]	G	T	2.121e^-4	0.544	UTR_3_PRIME CG4911 DOWNSTREAM CG4911	TF binding site mE1_TFBS_sens
2L	14148711	2L_14148711_SNP [dm3] 2L_14148711_SNP [dm6]	G	A	2.122e^-4	0.544	INTRON CG17341
2R	7783290	2R_7783290_SNP [dm3] 2R_11895785_SNP [dm6]	T	C	2.143e^-4	0.544	DOWNSTREAM MCPH1 & 1 other INTERGENIC
3R	16290207	3R_16290207_SNP [dm3] 3R_20464485_SNP [dm6]	G	A	2.144e^-4	0.544	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	2550603	3R_2550603_SNP [dm3] 3R_6724881_SNP [dm6]	T	C	2.153e^-4	0.544	INTRON pb	enhancer mE1_CBP_Enhancers regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	2550616	3R_2550616_SNP [dm3] 3R_6724894_SNP [dm6]	G	T	2.153e^-4	0.544	INTRON pb	enhancer mE1_CBP_Enhancers regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	2552242	3R_2552242_SNP [dm3] 3R_6726520_SNP [dm6]	G	T	2.153e^-4	0.544	INTRON pb	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	2596909	3R_2596909_SNP [dm3] 3R_6771187_SNP [dm6]	A	T	2.153e^-4	0.544	INTRON CR42721
3R	2596956	3R_2596956_SNP [dm3] 3R_6771234_SNP [dm6]	A	G	2.153e^-4	0.544	INTRON CR42721
3R	2613198	3R_2613198_SNP [dm3] 3R_6787476_SNP [dm6]	C	T	2.153e^-4	0.544	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	2614274	3R_2614274_SNP [dm3] 3R_6788552_SNP [dm6]	A	G	2.153e^-4	0.544	INTERGENIC
3R	2619915	3R_2619915_SNP [dm3] 3R_6794193_SNP [dm6]	T	A	2.153e^-4	0.544	INTRON Dfd
3R	2620357	3R_2620357_SNP [dm3] 3R_6794635_SNP [dm6]	C	T	2.153e^-4	0.544	INTRON Dfd
3R	2623919	3R_2623919_SNP [dm3] 3R_6798197_SNP [dm6]	T	G	2.153e^-4	0.544	INTRON Dfd	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	20664576	3R_20664576_SNP [dm3] 3R_24838854_SNP [dm6]	A	T	2.178e^-4	0.548	INTRON sosie
3R	2634621	3R_2634621_DEL [dm3] 3R_6808899_DEL [dm6]	TTGTTTT	T	2.180e^-4	0.548	DOWNSTREAM mir-10 EXON CR42651
2L	1039527	2L_1039527_SNP [dm3] 2L_1039527_SNP [dm6]	T	G	2.180e^-4	0.548	DOWNSTREAM CG4415 INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5733573	2L_5733573_SNP [dm3] 2L_5733573_SNP [dm6]	T	G	2.199e^-4	0.55	DOWNSTREAM CG11147 INTRON CG11030
3L	7229874	3L_7229874_DEL [dm3] 3L_7236774_DEL [dm6]	CAA	C	2.201e^-4	0.55	DOWNSTREAM CG14829 & 1 other INTERGENIC
3R	19161437	3R_19161437_SNP [dm3] 3R_23335715_SNP [dm6]	C	T	2.206e^-4	0.55	INTRON pnt
3R	19161447	3R_19161447_SNP [dm3] 3R_23335725_SNP [dm6]	C	G	2.206e^-4	0.55	INTRON pnt
3R	19161454	3R_19161454_SNP [dm3] 3R_23335732_SNP [dm6]	T	G	2.206e^-4	0.55	INTRON pnt
2R	9805636	2R_9805636_SNP [dm3] 2R_13918131_SNP [dm6]	A	C	2.209e^-4	0.55	INTRON shot
3R	14858118	3R_14858118_SNP [dm3] 3R_19032396_SNP [dm6]	T	G	2.210e^-4	0.55	UTR_3_PRIME CG6013
2L	15437700	2L_15437700_SNP [dm3] 2L_15437700_SNP [dm6]	G	T	2.219e^-4	0.552	INTERGENIC
2R	16945649	2R_16945649_SNP [dm3] 2R_21058144_SNP [dm6]	C	T	2.226e^-4	0.553	SYNONYMOUS_CODING cpa UPSTREAM shg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	25818498	3R_25818498_SNP [dm3] 3R_29992776_SNP [dm6]	A	C	2.230e^-4	0.553	SPLICE_SITE_REGION Acph-1 DOWNSTREAM CG7903 INTRON Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	13738596	2R_13738596_SNP [dm3] 2R_17851091_SNP [dm6]	A	C	2.237e^-4	0.554	UTR_5_PRIME olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	16224389	X_16224389_SNP [dm3] X_16330356_SNP [dm6]	G	A	2.265e^-4	0.56	DOWNSTREAM CG9921 INTRON CG9919
3R	2525032	3R_2525032_SNP [dm3] 3R_6699310_SNP [dm6]	A	G	2.276e^-4	0.561	DOWNSTREAM pncr002:3R INTERGENIC
3R	2525036	3R_2525036_SNP [dm3] 3R_6699314_SNP [dm6]	A	T	2.276e^-4	0.561	DOWNSTREAM pncr002:3R INTERGENIC
3L	5653998	3L_5653998_SNP [dm3] 3L_5660898_SNP [dm6]	A	G	2.289e^-4	0.562	SYNONYMOUS_CODING Sse INTRON sif
3L	4759678	3L_4759678_SNP [dm3] 3L_4759678_SNP [dm6]	A	T	2.290e^-4	0.562	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4759695	3L_4759695_SNP [dm3] 3L_4759695_SNP [dm6]	G	T	2.290e^-4	0.562	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6664383	3R_6664383_SNP [dm3] 3R_10838661_SNP [dm6]	T	C	2.290e^-4	0.562	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14861735	3R_14861735_SNP [dm3] 3R_19036013_SNP [dm6]	G	C	2.298e^-4	0.562	INTRON CG6026	TF binding site mE1_TFBS_inv
3L	5242770	3L_5242770_SNP [dm3] 3L_5249670_SNP [dm6]	G	T	2.298e^-4	0.562	INTRON shep
X	5544486	X_5544486_SNP [dm3] X_5650453_SNP [dm6]	C	G	2.300e^-4	0.562	DOWNSTREAM CG42265 INTERGENIC
3L	10486658	3L_10486658_SNP [dm3] 3L_10493558_SNP [dm6]	G	A	2.305e^-4	0.562	DOWNSTREAM S-Lap4 INTRON A2bp1
3R	22252792	3R_22252792_DEL [dm3] 3R_26427070_DEL [dm6]	TT	T	2.323e^-4	0.566	INTRON CR31084
2R	14536889	2R_14536889_SNP [dm3] 2R_18649384_SNP [dm6]	A	T	2.327e^-4	0.566	INTRON SP2637
X	2176948	X_2176948_SNP [dm3] X_2282915_SNP [dm6]	T	G	2.331e^-4	0.566	INTRON CG2865	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	8097854	3R_8097854_SNP [dm3] 3R_12272132_SNP [dm6]	G	C	2.342e^-4	0.567	UPSTREAM Sfp87B DOWNSTREAM CG17738 INTRON svp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	19541547	2R_19541547_DEL [dm3] 2R_23654024_DEL [dm6]	TAGGCGCATCCCAGCATTCG...	T	2.342e^-4	0.567	UTR_3_PRIME retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	17076683	X_17076683_SNP [dm3] X_17182650_SNP [dm6]	A	G	2.343e^-4	0.567	DOWNSTREAM CR44026 INTRON baz
3R	2550636	3R_2550636_SNP [dm3] 3R_6724914_SNP [dm6]	T	G	2.352e^-4	0.568	INTRON pb	enhancer mE1_CBP_Enhancers regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11092500	3R_11092500_SNP [dm3] 3R_15266778_SNP [dm6]	T	A	2.354e^-4	0.568	NON_SYNONYMOUS_CODING CG14864 DOWNSTREAM Oscp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1843121	3L_1843121_SNP [dm3] 3L_1843121_SNP [dm6]	A	C	2.362e^-4	0.569	INTERGENIC
3R	13145638	3R_13145638_SNP [dm3] 3R_17319916_SNP [dm6]	T	A	2.372e^-4	0.571	DOWNSTREAM beat-IIa INTERGENIC
2R	12124163	2R_12124163_SNP [dm3] 2R_16236658_SNP [dm6]	T	G	2.380e^-4	0.571	UPSTREAM CG3687 INTERGENIC
2L	6865359	2L_6865359_SNP [dm3] 2L_6865359_SNP [dm6]	T	A	2.380e^-4	0.571	INTRON Nha1
3R	19159914	3R_19159914_SNP [dm3] 3R_23334192_SNP [dm6]	C	A	2.382e^-4	0.571	INTRON pnt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	10999671	3R_10999671_SNP [dm3] 3R_15173949_SNP [dm6]	A	G	2.387e^-4	0.571	UTR_3_PRIME Mf INTRON Mf & 1 other
3L	1409093	3L_1409093_SNP [dm3] 3L_1409093_SNP [dm6]	G	A	2.388e^-4	0.571	INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11095794	3R_11095794_SNP [dm3] 3R_15270072_SNP [dm6]	C	A	2.409e^-4	0.571	SYNONYMOUS_CODING Zip88E DOWNSTREAM Cp190	TF binding site mE1_TFBS_HSA
3R	26280009	3R_26280009_DEL [dm3] 3R_30454287_DEL [dm6]	CTCCA	T	2.411e^-4	0.571	UPSTREAM aralar1 INTRON aralar1
3R	26280018	3R_26280018_MNP [dm3] 3R_30454296_MNP [dm6]	ATCGA	TATAG	2.411e^-4	0.571	UPSTREAM aralar1 INTRON aralar1
3R	26280027	3R_26280027_SNP [dm3] 3R_30454305_SNP [dm6]	A	T	2.411e^-4	0.571	UPSTREAM aralar1 INTRON aralar1
3R	26280029	3R_26280029_DEL [dm3] 3R_30454307_DEL [dm6]	TGTA	T	2.411e^-4	0.571	UPSTREAM aralar1 INTRON aralar1
3R	26280035	3R_26280035_DEL [dm3] 3R_30454313_DEL [dm6]	TCATAC	T	2.411e^-4	0.571	UPSTREAM aralar1 INTRON aralar1
3R	19161307	3R_19161307_SNP [dm3] 3R_23335585_SNP [dm6]	C	T	2.414e^-4	0.571	INTRON pnt
3R	19161427	3R_19161427_SNP [dm3] 3R_23335705_SNP [dm6]	A	G	2.414e^-4	0.571	INTRON pnt
X	4987398	X_4987398_SNP [dm3] X_5093365_SNP [dm6]	T	G	2.420e^-4	0.571	INTRON rg & 1 other
2L	7814766	2L_7814766_SNP [dm3] 2L_7814766_SNP [dm6]	C	A	2.421e^-4	0.571	INTRON LanB1	TF binding site mE1_TFBS_cad
2R	16610813	2R_16610813_SNP [dm3] 2R_20723308_SNP [dm6]	T	C	2.428e^-4	0.571	DOWNSTREAM CR44660 INTRON dpr
3L	10588935	3L_10588935_SNP [dm3] 3L_10595835_SNP [dm6]	A	G	2.436e^-4	0.571	INTERGENIC
2L	6163939	2L_6163939_SNP [dm3] 2L_6163939_SNP [dm6]	G	A	2.438e^-4	0.571	INTERGENIC
2R	17487584	2R_17487584_SNP [dm3] 2R_21600079_SNP [dm6]	G	A	2.440e^-4	0.571	INTERGENIC
3L	9727944	3L_9727944_SNP [dm3] 3L_9734844_SNP [dm6]	T	G	2.441e^-4	0.571	NON_SYNONYMOUS_CODING CG42268 UTR_3_PRIME CG42268
3L	16155890	3L_16155890_DEL [dm3] 3L_16162790_DEL [dm6]	AGA	A	2.449e^-4	0.571	INTRON CG5151	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	16155902	3L_16155902_SNP [dm3] 3L_16162802_SNP [dm6]	G	T	2.449e^-4	0.571	INTRON CG5151	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	16155920	3L_16155920_SNP [dm3] 3L_16162820_SNP [dm6]	T	A	2.449e^-4	0.571	INTRON CG5151	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	5940909	2R_5940909_SNP [dm3] 2R_10053404_SNP [dm6]	T	A	2.469e^-4	0.575	UPSTREAM CR44297 & 1 other DOWNSTREAM Def INTRON magu
2L	7833732	2L_7833732_SNP [dm3] 2L_7833732_SNP [dm6]	G	T	2.473e^-4	0.575	DOWNSTREAM mts INTERGENIC	TF binding site mE1_TFBS_HSA
X	14268333	X_14268333_SNP [dm3] X_14374300_SNP [dm6]	G	A	2.492e^-4	0.579	INTRON dpr8
3L	18012154	3L_18012154_SNP [dm3] 3L_18019054_SNP [dm6]	A	C	2.499e^-4	0.579	INTRON Eip75B	TF binding site mE1_TFBS_HSA
3R	19158560	3R_19158560_SNP [dm3] 3R_23332838_SNP [dm6]	T	C	2.499e^-4	0.579	INTRON pnt
3R	24197095	3R_24197095_SNP [dm3] 3R_28371373_SNP [dm6]	T	A	2.506e^-4	0.58	INTERGENIC
3R	24428724	3R_24428724_SNP [dm3] 3R_28603002_SNP [dm6]	G	C	2.508e^-4	0.58	UPSTREAM snoRNA:Psi28S-3305c DOWNSTREAM snoRNA:Psi28S-3405b & 3 others INTRON Hrb98DE	TF binding site mE1_TFBS_sens
3R	2628451	3R_2628451_SNP [dm3] 3R_6802729_SNP [dm6]	G	C	2.511e^-4	0.58	DOWNSTREAM Dfd INTERGENIC
3L	10006125	3L_10006125_SNP [dm3] 3L_10013025_SNP [dm6]	C	A	2.517e^-4	0.58	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13644773	2L_13644773_SNP [dm3] 2L_13644773_SNP [dm6]	A	C	2.524e^-4	0.581	INTERGENIC	TF binding site mE1_TFBS_inv
2L	16386469	2L_16386469_SNP [dm3] 2L_16386469_SNP [dm6]	A	T	2.527e^-4	0.581	INTERGENIC
2R	8132346	2R_8132346_SNP [dm3] 2R_12244841_SNP [dm6]	C	T	2.535e^-4	0.582	UPSTREAM CG43244 INTERGENIC
2R	17255557	2R_17255557_SNP [dm3] 2R_21368052_SNP [dm6]	T	C	2.549e^-4	0.584	INTRON cv-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18161272	3R_18161272_SNP [dm3] 3R_22335550_SNP [dm6]	A	T	2.553e^-4	0.585	INTRON CG5388
3L	12099319	3L_12099319_SNP [dm3] 3L_12106219_SNP [dm6]	G	A	2.567e^-4	0.587	INTERGENIC
2R	11819584	2R_11819584_SNP [dm3] 2R_15932079_SNP [dm6]	G	A	2.576e^-4	0.588	UPSTREAM bdg DOWNSTREAM Iap2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
X	20542571	X_20542571_SNP [dm3] X_20671544_SNP [dm6]	A	G	2.577e^-4	0.588	NON_SYNONYMOUS_CODING hydra
3R	8599619	3R_8599619_SNP [dm3] 3R_12773897_SNP [dm6]	A	G	2.584e^-4	0.589	INTRON beat-Vc
3R	22070385	3R_22070385_SNP [dm3] 3R_26244663_SNP [dm6]	A	T	2.592e^-4	0.589	INTRON CR42745
2L	17388996	2L_17388996_SNP [dm3] 2L_17388996_SNP [dm6]	A	G	2.592e^-4	0.589	UPSTREAM CLIP-190 INTRON CLIP-190
2L	10929409	2L_10929409_SNP [dm3] 2L_10929409_SNP [dm6]	G	A	2.595e^-4	0.589	INTRON dpr2
3L	8974027	3L_8974027_SNP [dm3] 3L_8980927_SNP [dm6]	G	A	2.599e^-4	0.589	UPSTREAM CG13314 INTERGENIC
2L	510727	2L_510727_SNP [dm3] 2L_510727_SNP [dm6]	T	A	2.608e^-4	0.59	INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	5804095	2R_5804095_SNP [dm3] 2R_9916590_SNP [dm6]	C	T	2.621e^-4	0.592	SYNONYMOUS_CODING Mef2 UTR_3_PRIME Mef2	TF binding site mE1_TFBS_cad
3L	1281378	3L_1281378_SNP [dm3] 3L_1281378_SNP [dm6]	C	A	2.625e^-4	0.592	INTRON CG32333
3R	11512266	3R_11512266_MNP [dm3] 3R_15686544_MNP [dm6]	TTC	AAA	2.629e^-4	0.592	INTRON pxb
2L	16375041	2L_16375041_SNP [dm3] 2L_16375041_SNP [dm6]	T	A	2.631e^-4	0.592	INTERGENIC
3R	2621127	3R_2621127_SNP [dm3] 3R_6795405_SNP [dm6]	A	T	2.634e^-4	0.592	INTRON Dfd
3L	15594404	3L_15594404_SNP [dm3] 3L_15601304_SNP [dm6]	C	A	2.658e^-4	0.597	INTRON RhoGAP71E
2R	1370699	2R_1370699_SNP [dm3] 2R_5483194_SNP [dm6]	C	T	2.667e^-4	0.598	INTRON CG30440	transposable element FlyBase
3R	11003827	3R_11003827_SNP [dm3] 3R_15178105_SNP [dm6]	A	G	2.669e^-4	0.598	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
3R	23312659	3R_23312659_SNP [dm3] 3R_27486937_SNP [dm6]	G	T	2.672e^-4	0.598	UPSTREAM Gr98a INTERGENIC
3L	19557927	3L_19557927_SNP [dm3] 3L_19564827_SNP [dm6]	T	C	2.734e^-4	0.608	UPSTREAM mir-9a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	16366563	2L_16366563_SNP [dm3] 2L_16366563_SNP [dm6]	A	T	2.737e^-4	0.608	SYNONYMOUS_CODING jhamt
X	20397820	X_20397820_SNP [dm3] X_20526793_SNP [dm6]	G	C	2.760e^-4	0.608	UPSTREAM CG42579 INTERGENIC
2L	4247495	2L_4247495_SNP [dm3] 2L_4247495_SNP [dm6]	G	A	2.763e^-4	0.608	INTRON CR44059
2L	7135245	2L_7135245_SNP [dm3] 2L_7135245_SNP [dm6]	G	A	2.765e^-4	0.608	INTRON Pvf3	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15557760	2R_15557760_SNP [dm3] 2R_19670255_SNP [dm6]	T	A	2.766e^-4	0.608	UPSTREAM isopeptidase-T-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	15557795	2R_15557795_SNP [dm3] 2R_19670290_SNP [dm6]	C	G	2.766e^-4	0.608	UPSTREAM isopeptidase-T-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	15557846	2R_15557846_SNP [dm3] 2R_19670341_SNP [dm6]	G	C	2.766e^-4	0.608	UPSTREAM isopeptidase-T-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	15557850	2R_15557850_SNP [dm3] 2R_19670345_SNP [dm6]	T	G	2.766e^-4	0.608	UPSTREAM isopeptidase-T-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	15557853	2R_15557853_SNP [dm3] 2R_19670348_SNP [dm6]	T	G	2.766e^-4	0.608	UPSTREAM isopeptidase-T-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	15557956	2R_15557956_SNP [dm3] 2R_19670451_SNP [dm6]	G	A	2.766e^-4	0.608	UPSTREAM isopeptidase-T-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_run mE1_TFBS_Ubx
2R	15430114	2R_15430114_SNP [dm3] 2R_19542609_SNP [dm6]	C	T	2.768e^-4	0.608	INTRON sm	TF binding site mE1_TFBS_inv
3R	26280024	3R_26280024_SNP [dm3] 3R_30454302_SNP [dm6]	C	A	2.773e^-4	0.608	UPSTREAM aralar1 INTRON aralar1
3L	1289428	3L_1289428_SNP [dm3] 3L_1289428_SNP [dm6]	A	T	2.778e^-4	0.608	INTRON CG32333	TF binding site mE1_TFBS_chinmo
X	18431206	X_18431206_SNP [dm3] X_18537173_SNP [dm6]	G	C	2.779e^-4	0.608	INTRON Bx
3R	19161490	3R_19161490_SNP [dm3] 3R_23335768_SNP [dm6]	T	G	2.781e^-4	0.608	INTRON pnt
2R	19518587	2R_19518587_SNP [dm3] 2R_23631064_SNP [dm6]	G	A	2.788e^-4	0.608	INTERGENIC
X	15796941	X_15796941_SNP [dm3] X_15902908_SNP [dm6]	A	G	2.791e^-4	0.608	INTRON shi
2L	17422190	2L_17422190_SNP [dm3] 2L_17422190_SNP [dm6]	C	T	2.803e^-4	0.608	INTRON Dif
2L	17422202	2L_17422202_SNP [dm3] 2L_17422202_SNP [dm6]	T	A	2.803e^-4	0.608	INTRON Dif
2L	17422209	2L_17422209_SNP [dm3] 2L_17422209_SNP [dm6]	A	G	2.803e^-4	0.608	INTRON Dif
2L	17422216	2L_17422216_SNP [dm3] 2L_17422216_SNP [dm6]	A	G	2.803e^-4	0.608	INTRON Dif
2L	17422224	2L_17422224_SNP [dm3] 2L_17422224_SNP [dm6]	A	T	2.803e^-4	0.608	INTRON Dif
2L	17422227	2L_17422227_SNP [dm3] 2L_17422227_SNP [dm6]	A	C	2.803e^-4	0.608	INTRON Dif
2R	13588120	2R_13588120_DEL [dm3] 2R_17700615_DEL [dm6]	TT	T	2.806e^-4	0.608	UPSTREAM snoRNA:U76:54Eb & 3 others DOWNSTREAM snoRNA:Me28S-A3407a & 3 others INTRON Uhg1
3R	2538280	3R_2538280_SNP [dm3] 3R_6712558_SNP [dm6]	G	A	2.807e^-4	0.608	INTRON pb	regulatory region REDfly_CRMs
3R	10997498	3R_10997498_SNP [dm3] 3R_15171776_SNP [dm6]	C	G	2.812e^-4	0.609	INTRON Mf & 1 other
3R	14193616	3R_14193616_SNP [dm3] 3R_18367894_SNP [dm6]	A	G	2.816e^-4	0.609	UTR_3_PRIME Nup43 DOWNSTREAM gl
X	12775770	X_12775770_SNP [dm3] X_12881737_SNP [dm6]	G	A	2.824e^-4	0.609	INTRON Pde9
3R	2620864	3R_2620864_SNP [dm3] 3R_6795142_SNP [dm6]	G	A	2.828e^-4	0.61	INTRON Dfd
2R	13918734	2R_13918734_SNP [dm3] 2R_18031229_SNP [dm6]	A	G	2.841e^-4	0.612	INTERGENIC
X	8578764	X_8578764_INS [dm3] X_8684731_INS [dm6]	T	TC	2.850e^-4	0.613	UPSTREAM CG11284 INTRON CG11284
2R	12504216	2R_12504216_SNP [dm3] 2R_16616711_SNP [dm6]	C	T	2.854e^-4	0.613	INTRON CG5065
3L	11297580	3L_11297580_SNP [dm3] 3L_11304480_SNP [dm6]	T	C	2.864e^-4	0.614	INTERGENIC
3R	2649403	3R_2649403_DEL [dm3] 3R_6823681_DEL [dm6]	AGGTTGACA	A	2.884e^-4	0.617	UTR_3_PRIME Scr UPSTREAM tRNA:K5:84ABa DOWNSTREAM 7SLRNA:CR32864	regulatory region REDfly_CRMs
3R	2611638	3R_2611638_SNP [dm3] 3R_6785916_SNP [dm6]	T	A	2.891e^-4	0.617	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_inv
X	20974000	X_20974000_SNP [dm3] X_21102973_SNP [dm6]	A	G	2.893e^-4	0.617	UPSTREAM CG15446 INTRON stg1 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	17726812	3R_17726812_SNP [dm3] 3R_21901090_SNP [dm6]	C	G	2.897e^-4	0.617	INTRON CG6678
3R	20434022	3R_20434022_SNP [dm3] 3R_24608300_SNP [dm6]	T	C	2.898e^-4	0.617	INTRON mld
2L	9398566	2L_9398566_SNP [dm3] 2L_9398566_SNP [dm6]	C	G	2.901e^-4	0.617	UPSTREAM CG4438 INTRON Shawl
X	16466447	X_16466447_SNP [dm3] X_16572414_SNP [dm6]	A	C	2.902e^-4	0.617	INTRON CanA-14F
2L	17445024	2L_17445024_SNP [dm3] 2L_17445024_SNP [dm6]	T	G	2.906e^-4	0.617	INTRON dl
X	14127922	X_14127922_SNP [dm3] X_14233889_SNP [dm6]	C	T	2.908e^-4	0.617	UTR_5_PRIME CG42271 DOWNSTREAM Fbxl4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11575711	2R_11575711_SNP [dm3] 2R_15688206_SNP [dm6]	G	T	2.928e^-4	0.621	NON_SYNONYMOUS_CODING Cep89 SPLICE_SITE_REGION Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19739521	3R_19739521_SNP [dm3] 3R_23913799_SNP [dm6]	T	G	2.932e^-4	0.621	SYNONYMOUS_CODING sba	TF binding site mE1_TFBS_Kr
2R	19523908	2R_19523908_SNP [dm3] 2R_23636385_SNP [dm6]	A	T	2.937e^-4	0.621	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	8833139	X_8833139_DEL [dm3] X_8939106_DEL [dm6]	CC	C	2.945e^-4	0.621	INTRON rdgA	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10486518	3L_10486518_SNP [dm3] 3L_10493418_SNP [dm6]	C	A	2.948e^-4	0.621	DOWNSTREAM S-Lap4 INTRON A2bp1	TF binding site mE1_TFBS_inv
2L	3972468	2L_3972468_SNP [dm3] 2L_3972468_SNP [dm6]	G	A	2.948e^-4	0.621	INTRON fred
3R	10200495	3R_10200495_SNP [dm3] 3R_14374773_SNP [dm6]	C	T	2.955e^-4	0.622	DOWNSTREAM CR44943 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17402320	2R_17402320_SNP [dm3] 2R_21514815_SNP [dm6]	A	T	2.980e^-4	0.626	UTR_3_PRIME MESK2 INTRON MESK2	TF binding site mE1_TFBS_Trl
3R	19836945	3R_19836945_SNP [dm3] 3R_24011223_SNP [dm6]	A	T	2.981e^-4	0.626	INTRON KrT95D
2R	12257559	2R_12257559_SNP [dm3] 2R_16370054_SNP [dm6]	G	T	2.990e^-4	0.627	INTERGENIC
3R	16289872	3R_16289872_SNP [dm3] 3R_20464150_SNP [dm6]	C	T	3.015e^-4	0.63	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	16289879	3R_16289879_SNP [dm3] 3R_20464157_SNP [dm6]	G	A	3.015e^-4	0.63	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	1933173	2L_1933173_SNP [dm3] 2L_1933173_SNP [dm6]	A	G	3.017e^-4	0.63	INTRON CG7337
3R	6654275	3R_6654275_SNP [dm3] 3R_10828553_SNP [dm6]	G	T	3.024e^-4	0.631	INTRON Cad86C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	10111292	3L_10111292_DEL [dm3] 3L_10118192_DEL [dm6]	ACAC	G	3.028e^-4	0.631	INTRON dpr6
2L	17420496	2L_17420496_SNP [dm3] 2L_17420496_SNP [dm6]	C	T	3.046e^-4	0.634	INTRON Dif
2L	3396644	2L_3396644_SNP [dm3] 2L_3396644_SNP [dm6]	A	G	3.050e^-4	0.634	DOWNSTREAM CR44792 INTERGENIC
X	5594774	X_5594774_SNP [dm3] X_5700741_SNP [dm6]	G	T	3.059e^-4	0.635	INTRON CG4096
2R	16945195	2R_16945195_SNP [dm3] 2R_21057690_SNP [dm6]	C	G	3.077e^-4	0.638	UPSTREAM cpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18145198	2L_18145198_SNP [dm3] 2L_18145198_SNP [dm6]	G	T	3.091e^-4	0.64	INTRON Socs36E EXON CR44478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	15377585	2R_15377585_SNP [dm3] 2R_19490080_SNP [dm6]	C	G	3.094e^-4	0.64	INTRON Oseg6
3R	16290085	3R_16290085_SNP [dm3] 3R_20464363_SNP [dm6]	G	T	3.114e^-4	0.644	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	3084545	3R_3084545_DEL [dm3] 3R_7258823_DEL [dm6]	TTGGTGTCTTT...	T	3.142e^-4	0.645	INTRON Gld
2R	5798014	2R_5798014_SNP [dm3] 2R_9910509_SNP [dm6]	A	T	3.144e^-4	0.645	UPSTREAM Etf-QO DOWNSTREAM FMRFa INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	8365742	X_8365742_SNP [dm3] X_8471709_SNP [dm6]	C	T	3.146e^-4	0.645	INTRON CG33223 & 1 other
3L	5103422	3L_5103422_INS [dm3] 3L_5103422_INS [dm6]	G	CCACCACTACCAGGACCAA...	3.150e^-4	0.645	INTERGENIC
2L	15065275	2L_15065275_SNP [dm3] 2L_15065275_SNP [dm6]	T	C	3.155e^-4	0.645	SYNONYMOUS_CODING vig INTRON vas
3R	17006094	3R_17006094_INS [dm3] 3R_21180372_INS [dm6]	T	TT	3.155e^-4	0.645	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	17006208	3R_17006208_SNP [dm3] 3R_21180486_SNP [dm6]	G	T	3.155e^-4	0.645	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	17653411	3R_17653411_INS [dm3] 3R_21827689_INS [dm6]	G	GCCAGTCG	3.160e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	16156093	3L_16156093_SNP [dm3] 3L_16162993_SNP [dm6]	T	C	3.163e^-4	0.645	INTRON CG5151	TF binding site mE1_TFBS_HSA
X	13066978	X_13066978_SNP [dm3] X_13172945_SNP [dm6]	C	G	3.172e^-4	0.645	NON_SYNONYMOUS_CODING CG34411	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	969855	3L_969855_SNP [dm3] 3L_969855_SNP [dm6]	A	T	3.179e^-4	0.645	INTRON Glut1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14857791	3R_14857791_SNP [dm3] 3R_19032069_SNP [dm6]	T	C	3.179e^-4	0.645	UPSTREAM Prp18 INTRON CG6013	TF binding site BDTNP1_TFBS_Med
3R	16049222	3R_16049222_SNP [dm3] 3R_20223500_SNP [dm6]	A	T	3.179e^-4	0.645	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16049223	3R_16049223_SNP [dm3] 3R_20223501_SNP [dm6]	C	A	3.179e^-4	0.645	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5646875	X_5646875_SNP [dm3] X_5752842_SNP [dm6]	A	T	3.179e^-4	0.645	DOWNSTREAM CG4078 & 1 other INTRON CG15772	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	2632851	3R_2632851_SNP [dm3] 3R_6807129_SNP [dm6]	T	C	3.182e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12488494	3L_12488494_SNP [dm3] 3L_12495394_SNP [dm6]	A	T	3.182e^-4	0.645	INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	11491740	2R_11491740_SNP [dm3] 2R_15604235_SNP [dm6]	A	G	3.187e^-4	0.645	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18575166	3L_18575166_SNP [dm3] 3L_18582066_SNP [dm6]	G	C	3.192e^-4	0.646	INTERGENIC
3R	22520280	3R_22520280_SNP [dm3] 3R_26694558_SNP [dm6]	G	C	3.202e^-4	0.647	UPSTREAM TwdlQ INTERGENIC
2L	8782546	2L_8782546_SNP [dm3] 2L_8782546_SNP [dm6]	C	T	3.205e^-4	0.647	UPSTREAM CG42710 INTERGENIC
3L	7032382	3L_7032382_SNP [dm3] 3L_7039282_SNP [dm6]	G	A	3.224e^-4	0.65	INTRON Mp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17579977	3L_17579977_SNP [dm3] 3L_17586877_SNP [dm6]	A	G	3.235e^-4	0.651	INTRON Eip74EF
2R	12506025	2R_12506025_DEL [dm3] 2R_16618520_DEL [dm6]	AAA	A	3.254e^-4	0.654	INTRON CG5065
3R	6653909	3R_6653909_SNP [dm3] 3R_10828187_SNP [dm6]	A	C	3.256e^-4	0.654	INTRON Cad86C
3L	18173314	3L_18173314_SNP [dm3] 3L_18180214_SNP [dm6]	A	C	3.295e^-4	0.661	INTRON W
3L	21485619	3L_21485619_SNP [dm3] 3L_21492519_SNP [dm6]	G	A	3.330e^-4	0.667	UPSTREAM CG7519 INTRON CG7202
X	6878141	X_6878141_DEL [dm3] X_6984108_DEL [dm6]	AGCTTTAACGTTAT...	A	3.345e^-4	0.668	UTR_5_PRIME ogre INTRON ogre & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16901380	2R_16901380_SNP [dm3] 2R_21013875_SNP [dm6]	A	T	3.351e^-4	0.668	INTRON CG9346
3L	9989811	3L_9989811_SNP [dm3] 3L_9996711_SNP [dm6]	G	A	3.351e^-4	0.668	INTRON dpr6
X	14286143	X_14286143_SNP [dm3] X_14392110_SNP [dm6]	T	C	3.351e^-4	0.668	INTRON dpr8
3L	15586631	3L_15586631_SNP [dm3] 3L_15593531_SNP [dm6]	C	A	3.352e^-4	0.668	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8118638	2R_8118638_SNP [dm3] 2R_12231133_SNP [dm6]	G	A	3.354e^-4	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	6119240	2R_6119240_DEL [dm3] 2R_10231735_DEL [dm6]	TGTGCT	T	3.369e^-4	0.669	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	8178308	X_8178308_SNP [dm3] X_8284275_SNP [dm6]	G	T	3.374e^-4	0.669	INTRON nAChRalpha3
3R	14858175	3R_14858175_SNP [dm3] 3R_19032453_SNP [dm6]	C	A	3.376e^-4	0.669	DOWNSTREAM CG6013 INTERGENIC
3L	16155968	3L_16155968_SNP [dm3] 3L_16162868_SNP [dm6]	T	A	3.377e^-4	0.669	INTRON CG5151	TF binding site mE1_TFBS_HSA
3R	24997948	3R_24997948_SNP [dm3] 3R_29172226_SNP [dm6]	T	A	3.389e^-4	0.671	UTR_3_PRIME CG14509 DOWNSTREAM CG11898	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	19435248	X_19435248_SNP [dm3] X_19541215_SNP [dm6]	C	T	3.399e^-4	0.672	INTRON CG32532
2L	3558905	2L_3558905_SNP [dm3] 2L_3558905_SNP [dm6]	C	A	3.406e^-4	0.672	INTERGENIC
2L	3558908	2L_3558908_SNP [dm3] 2L_3558908_SNP [dm6]	C	A	3.406e^-4	0.672	INTERGENIC
3R	24121253	3R_24121253_SNP [dm3] 3R_28295531_SNP [dm6]	A	G	3.422e^-4	0.674	UPSTREAM CR44229 DOWNSTREAM CG17856 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	4266799	3R_4266799_SNP [dm3] 3R_8441077_SNP [dm6]	G	T	3.423e^-4	0.674	INTRON CG45263
X	10618379	X_10618379_SNP [dm3] X_10724346_SNP [dm6]	T	C	3.448e^-4	0.677	INTRON CG32676	TF binding site BDTNP1_TFBS_dl
X	10618389	X_10618389_SNP [dm3] X_10724356_SNP [dm6]	A	C	3.448e^-4	0.677	INTRON CG32676	TF binding site BDTNP1_TFBS_dl
3R	26090157	3R_26090157_SNP [dm3] 3R_30264435_SNP [dm6]	A	G	3.471e^-4	0.681	INTERGENIC
3R	19161497	3R_19161497_SNP [dm3] 3R_23335775_SNP [dm6]	T	A	3.476e^-4	0.681	INTRON pnt
2R	17117375	2R_17117375_DEL [dm3] 2R_21229870_DEL [dm6]	CTCCACC	C	3.488e^-4	0.681	INTRON ASPP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17117386	2R_17117386_SNP [dm3] 2R_21229881_SNP [dm6]	G	C	3.488e^-4	0.681	INTRON ASPP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18585240	3R_18585240_SNP [dm3] 3R_22759518_SNP [dm6]	A	G	3.491e^-4	0.681	SYNONYMOUS_CODING CG4725 INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6642133	2R_6642133_SNP [dm3] 2R_10754628_SNP [dm6]	T	C	3.492e^-4	0.681	INTRON CG33144
2L	7598488	2L_7598488_SNP [dm3] 2L_7598488_SNP [dm6]	A	T	3.499e^-4	0.682	INTERGENIC
2R	10095624	2R_10095624_SNP [dm3] 2R_14208119_SNP [dm6]	G	T	3.501e^-4	0.682	INTRON Sox15	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	16072849	X_16072849_SNP [dm3] X_16178816_SNP [dm6]	C	T	3.515e^-4	0.683	INTERGENIC
2L	9678542	2L_9678542_SNP [dm3] 2L_9678542_SNP [dm6]	G	A	3.518e^-4	0.683	INTERGENIC
2R	6111501	2R_6111501_SNP [dm3] 2R_10223996_SNP [dm6]	G	A	3.545e^-4	0.687	UTR_5_PRIME Hr46 INTRON Hr46 & 1 other
2L	7558345	2L_7558345_SNP [dm3] 2L_7558345_SNP [dm6]	G	A	3.546e^-4	0.687	INTRON RapGAP1
X	2272409	X_2272409_SNP [dm3] X_2378376_SNP [dm6]	C	T	3.550e^-4	0.687	SYNONYMOUS_CODING PsGEF INTRON PsGEF	TF binding site mE1_TFBS_chinmo
3R	9864246	3R_9864246_SNP [dm3] 3R_14038524_SNP [dm6]	G	A	3.552e^-4	0.687	INTERGENIC
3L	15184163	3L_15184163_SNP [dm3] 3L_15191063_SNP [dm6]	G	A	3.563e^-4	0.688	DOWNSTREAM CR44562 INTERGENIC
X	6584722	X_6584722_SNP [dm3] X_6690689_SNP [dm6]	C	G	3.564e^-4	0.688	SYNONYMOUS_CODING CG14442 DOWNSTREAM CG14442	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14286135	X_14286135_SNP [dm3] X_14392102_SNP [dm6]	C	A	3.598e^-4	0.694	INTRON dpr8
2L	7598483	2L_7598483_SNP [dm3] 2L_7598483_SNP [dm6]	A	C	3.617e^-4	0.696	INTERGENIC
2L	7598486	2L_7598486_SNP [dm3] 2L_7598486_SNP [dm6]	C	T	3.617e^-4	0.696	INTERGENIC
2R	17274615	2R_17274615_SNP [dm3] 2R_21387110_SNP [dm6]	A	T	3.644e^-4	0.699	UPSTREAM EfSec INTRON Acox57D-p	TF binding site mE1_TFBS_sens
3R	9633663	3R_9633663_SNP [dm3] 3R_13807941_SNP [dm6]	C	T	3.648e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	14101223	X_14101223_SNP [dm3] X_14207190_SNP [dm6]	C	T	3.648e^-4	0.699	INTRON l_1_G0007 & 1 other
3R	6941894	3R_6941894_SNP [dm3] 3R_11116172_SNP [dm6]	A	C	3.649e^-4	0.699	UPSTREAM CG6629 INTERGENIC
3R	3813469	3R_3813469_SNP [dm3] 3R_7987747_SNP [dm6]	T	C	3.659e^-4	0.699	INTRON CG2781
3L	10950156	3L_10950156_DEL [dm3] 3L_10957056_DEL [dm6]	CCATCCAAAGTGGAGCTAAT...	T	3.663e^-4	0.699	INTERGENIC
2R	2504688	2R_2504688_SNP [dm3] 2R_6617183_SNP [dm6]	G	A	3.664e^-4	0.699	SYNONYMOUS_CODING jing	TF binding site mE1_TFBS_cad
2R	12345291	2R_12345291_SNP [dm3] 2R_16457786_SNP [dm6]	G	A	3.684e^-4	0.702	INTERGENIC
X	10010189	X_10010189_SNP [dm3] X_10116156_SNP [dm6]	A	G	3.694e^-4	0.703	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	18122340	3L_18122340_SNP [dm3] 3L_18129240_SNP [dm6]	A	G	3.699e^-4	0.703	UTR_3_PRIME Cyp312a1 DOWNSTREAM Cyp312a1
3L	4866021	3L_4866021_SNP [dm3] 3L_4866021_SNP [dm6]	G	C	3.701e^-4	0.703	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_inv
2L	4356294	2L_4356294_SNP [dm3] 2L_4356294_SNP [dm6]	A	T	3.709e^-4	0.704	INTERGENIC
X	16472434	X_16472434_SNP [dm3] X_16578401_SNP [dm6]	A	G	3.710e^-4	0.704	INTRON CanA-14F
X	2272931	X_2272931_SNP [dm3] X_2378898_SNP [dm6]	G	A	3.715e^-4	0.704	SYNONYMOUS_CODING PsGEF INTRON PsGEF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5459364	X_5459364_SNP [dm3] X_5565331_SNP [dm6]	T	C	3.723e^-4	0.705	INTERGENIC
3R	16290147	3R_16290147_SNP [dm3] 3R_20464425_SNP [dm6]	T	A	3.732e^-4	0.705	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	5969013	3R_5969013_SNP [dm3] 3R_10143291_SNP [dm6]	C	T	3.737e^-4	0.705	SYNONYMOUS_CODING CG42759 INTRON TAF1B	TF binding site mE1_TFBS_sens
3L	8222645	3L_8222645_SNP [dm3] 3L_8229545_SNP [dm6]	A	T	3.754e^-4	0.705	SYNONYMOUS_CODING eIF4E-3
X	4209593	X_4209593_SNP [dm3] X_4315560_SNP [dm6]	C	T	3.754e^-4	0.705	SYNONYMOUS_CODING mei-9 UPSTREAM CR44957
3L	2892911	3L_2892911_DEL [dm3] 3L_2892911_DEL [dm6]	CAATAC	C	3.760e^-4	0.705	UPSTREAM spz5 INTERGENIC
2L	17427521	2L_17427521_SNP [dm3] 2L_17427521_SNP [dm6]	C	T	3.764e^-4	0.705	INTRON Dif
3R	4266100	3R_4266100_SNP [dm3] 3R_8440378_SNP [dm6]	C	A	3.766e^-4	0.705	INTRON CG45263
3L	13148284	3L_13148284_SNP [dm3] 3L_13155184_SNP [dm6]	G	A	3.773e^-4	0.705	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	4209575	X_4209575_SNP [dm3] X_4315542_SNP [dm6]	G	T	3.776e^-4	0.705	SYNONYMOUS_CODING mei-9 UPSTREAM CR44957
X	2888265	X_2888265_SNP [dm3] X_2994232_SNP [dm6]	C	A	3.777e^-4	0.705	INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11851996	3L_11851996_SNP [dm3] 3L_11858896_SNP [dm6]	A	G	3.782e^-4	0.705	INTRON CG44837
3R	14808787	3R_14808787_SNP [dm3] 3R_18983065_SNP [dm6]	A	T	3.788e^-4	0.705	UTR_3_PRIME snRNP-U1-C UPSTREAM gukh DOWNSTREAM dnk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	3182057	2L_3182057_SNP [dm3] 2L_3182057_SNP [dm6]	A	C	3.796e^-4	0.705	INTRON CG34393
2L	3182059	2L_3182059_SNP [dm3] 2L_3182059_SNP [dm6]	A	T	3.796e^-4	0.705	INTRON CG34393
2L	3182060	2L_3182060_SNP [dm3] 2L_3182060_SNP [dm6]	T	A	3.796e^-4	0.705	INTRON CG34393
2L	3182097	2L_3182097_SNP [dm3] 2L_3182097_SNP [dm6]	G	T	3.796e^-4	0.705	INTRON CG34393
3R	25812456	3R_25812456_SNP [dm3] 3R_29986734_SNP [dm6]	G	A	3.796e^-4	0.705	INTRON CG7896	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	14127943	X_14127943_SNP [dm3] X_14233910_SNP [dm6]	A	G	3.798e^-4	0.705	UTR_5_PRIME CG42271 DOWNSTREAM Fbxl4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2679991	3R_2679991_SNP [dm3] 3R_6854269_SNP [dm6]	C	A	3.801e^-4	0.705	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	3396507	2L_3396507_SNP [dm3] 2L_3396507_SNP [dm6]	A	T	3.846e^-4	0.713	DOWNSTREAM CR44792 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18449853	3R_18449853_SNP [dm3] 3R_22624131_SNP [dm6]	A	G	3.854e^-4	0.713	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	1017493	3L_1017493_SNP [dm3] 3L_1017493_SNP [dm6]	G	T	3.860e^-4	0.713	INTRON trio
2L	6197011	2L_6197011_SNP [dm3] 2L_6197011_SNP [dm6]	G	A	3.862e^-4	0.713	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17006199	3R_17006199_SNP [dm3] 3R_21180477_SNP [dm6]	T	A	3.876e^-4	0.713	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	8056413	3R_8056413_SNP [dm3] 3R_12230691_SNP [dm6]	G	T	3.889e^-4	0.713	DOWNSTREAM CG3916 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8056433	3R_8056433_SNP [dm3] 3R_12230711_SNP [dm6]	C	T	3.889e^-4	0.713	DOWNSTREAM CG3916 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8056438	3R_8056438_SNP [dm3] 3R_12230716_SNP [dm6]	C	A	3.889e^-4	0.713	DOWNSTREAM CG3916 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8056439	3R_8056439_SNP [dm3] 3R_12230717_SNP [dm6]	C	A	3.889e^-4	0.713	DOWNSTREAM CG3916 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
X	13933168	X_13933168_SNP [dm3] X_14039135_SNP [dm6]	C	G	3.895e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	27143639	3R_27143639_SNP [dm3] 3R_31317917_SNP [dm6]	G	C	3.896e^-4	0.713	INTRON CG34347
2R	20737134	2R_20737134_SNP [dm3] 2R_24849611_SNP [dm6]	C	T	3.896e^-4	0.713	SYNONYMOUS_CODING CG3650	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	12474189	3L_12474189_SNP [dm3] 3L_12481089_SNP [dm6]	C	G	3.898e^-4	0.713	INTRON CG10663
2L	15403330	2L_15403330_SNP [dm3] 2L_15403330_SNP [dm6]	T	C	3.915e^-4	0.716	INTERGENIC
2L	13637977	2L_13637977_SNP [dm3] 2L_13637977_SNP [dm6]	A	C	3.923e^-4	0.716	UTR_3_PRIME kuz DOWNSTREAM kuz
3L	9503946	3L_9503946_SNP [dm3] 3L_9510846_SNP [dm6]	A	T	3.926e^-4	0.716	UPSTREAM snoRNA:Me28S-G3253 INTRON RpS9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	2625079	3L_2625079_SNP [dm3] 3L_2625079_SNP [dm6]	T	G	3.935e^-4	0.716	INTRON Pxn
3R	12847107	3R_12847107_SNP [dm3] 3R_17021385_SNP [dm6]	G	T	3.938e^-4	0.716	UPSTREAM AdSL INTRON Pxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	10619254	X_10619254_SNP [dm3] X_10725221_SNP [dm6]	A	T	3.941e^-4	0.716	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2R	12225273	2R_12225273_SNP [dm3] 2R_16337768_SNP [dm6]	A	G	3.942e^-4	0.716	UPSTREAM Hmgs INTRON Hmgs
2L	1706411	2L_1706411_SNP [dm3] 2L_1706411_SNP [dm6]	T	A	3.968e^-4	0.72	UTR_3_PRIME cpb DOWNSTREAM CG17660
2L	7180527	2L_7180527_SNP [dm3] 2L_7180527_SNP [dm6]	G	C	3.973e^-4	0.72	INTERGENIC
2R	20443134	2R_20443134_DEL [dm3] 2R_24555611_DEL [dm6]	CAC	C	4.007e^-4	0.723	INTRON CG4622 & 1 other
3R	17016515	3R_17016515_SNP [dm3] 3R_21190793_SNP [dm6]	G	T	4.010e^-4	0.723	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9073407	2R_9073407_SNP [dm3] 2R_13185902_SNP [dm6]	G	A	4.010e^-4	0.723	SYNONYMOUS_CODING Kdm4B UTR_5_PRIME CG17724 UPSTREAM CG17724 INTRON seq & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9073412	2R_9073412_SNP [dm3] 2R_13185907_SNP [dm6]	A	G	4.010e^-4	0.723	NON_SYNONYMOUS_CODING Kdm4B UTR_5_PRIME CG17724 UPSTREAM CG17724 INTRON seq & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20684356	X_20684356_SNP [dm3] X_20813329_SNP [dm6]	T	A	4.012e^-4	0.723	INTRON shakB
2L	6192919	2L_6192919_SNP [dm3] 2L_6192919_SNP [dm6]	A	G	4.018e^-4	0.723	INTRON CG34380
3R	16293890	3R_16293890_SNP [dm3] 3R_20468168_SNP [dm6]	T	C	4.027e^-4	0.723	INTRON Gfrl
2R	10031620	2R_10031620_SNP [dm3] 2R_14144115_SNP [dm6]	C	G	4.031e^-4	0.723	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	12257605	2R_12257605_SNP [dm3] 2R_16370100_SNP [dm6]	G	A	4.041e^-4	0.723	INTERGENIC
2R	12257709	2R_12257709_SNP [dm3] 2R_16370204_SNP [dm6]	C	T	4.041e^-4	0.723	INTERGENIC
3L	15154324	3L_15154324_SNP [dm3] 3L_15161224_SNP [dm6]	C	A	4.052e^-4	0.723	SYNONYMOUS_CODING CG7011 UPSTREAM CG6878 DOWNSTREAM Prp31
2R	12296378	2R_12296378_SNP [dm3] 2R_16408873_SNP [dm6]	A	G	4.052e^-4	0.723	INTRON Sema-2b
X	14163504	X_14163504_SNP [dm3] X_14269471_SNP [dm6]	A	T	4.055e^-4	0.723	INTRON na
X	14163506	X_14163506_INS [dm3] X_14269473_INS [dm6]	T	TT	4.055e^-4	0.723	INTRON na
X	14163525	X_14163525_SNP [dm3] X_14269492_SNP [dm6]	G	A	4.055e^-4	0.723	INTRON na
3R	23085043	3R_23085043_SNP [dm3] 3R_27259321_SNP [dm6]	T	C	4.057e^-4	0.723	SYNONYMOUS_CODING woc UPSTREAM CR44049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18619099	3L_18619099_SNP [dm3] 3L_18625999_SNP [dm6]	G	A	4.061e^-4	0.723	UTR_5_PRIME MYPT-75D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1533161	3L_1533161_SNP [dm3] 3L_1533161_SNP [dm6]	C	T	4.063e^-4	0.723	SYNONYMOUS_CODING CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6119129	2R_6119129_SNP [dm3] 2R_10231624_SNP [dm6]	G	A	4.065e^-4	0.723	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	5636053	3L_5636053_SNP [dm3] 3L_5642953_SNP [dm6]	G	A	4.081e^-4	0.725	UPSTREAM Blimp-1 INTRON Blimp-1
3L	1281335	3L_1281335_SNP [dm3] 3L_1281335_SNP [dm6]	G	A	4.083e^-4	0.725	INTRON CG32333
3L	3803058	3L_3803058_SNP [dm3] 3L_3803058_SNP [dm6]	G	T	4.097e^-4	0.726	DOWNSTREAM ntc INTRON CG32264
3R	26279972	3R_26279972_SNP [dm3] 3R_30454250_SNP [dm6]	G	A	4.107e^-4	0.727	UPSTREAM aralar1 INTRON aralar1
3L	13364824	3L_13364824_SNP [dm3] 3L_13371724_SNP [dm6]	T	A	4.120e^-4	0.728	INTERGENIC
3R	11094964	3R_11094964_SNP [dm3] 3R_15269242_SNP [dm6]	T	C	4.121e^-4	0.728	SYNONYMOUS_CODING Zip88E UPSTREAM CG14864	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	11490257	2R_11490257_SNP [dm3] 2R_15602752_SNP [dm6]	C	T	4.128e^-4	0.729	INTERGENIC

By genomic position
Variant impact
Gene name

n phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results