DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.771e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.04125
In_3R_K	0.05926

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	4.6205	0.0992
In_3R_K	4.1982	0.0405

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1877 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	6739540	2R_6739540_SNP [dm3] 2R_10852035_SNP [dm6]	T	C	3.008e^-6	0.811	INTRON CG30015
3L	11195979	3L_11195979_SNP [dm3] 3L_11202879_SNP [dm6]	G	A	4.095e^-6	0.811	SPLICE_SITE_REGION Plod DOWNSTREAM CG14141 INTRON Plod
3L	18998179	3L_18998179_SNP [dm3] 3L_19005079_SNP [dm6]	G	A	7.359e^-6	0.811	SYNONYMOUS_CODING nkd UTR_3_PRIME nkd	TF binding site mE1_TFBS_chinmo
3L	4245396	3L_4245396_SNP [dm3] 3L_4245396_SNP [dm6]	C	T	8.672e^-6	0.811	SYNONYMOUS_CODING pav DOWNSTREAM ago	TF binding site mE1_TFBS_sens
2R	10774709	2R_10774709_DEL [dm3] 2R_14887204_DEL [dm6]	TCTACCCT	T	8.963e^-6	0.811	UTR_3_PRIME Cyp6a8 UPSTREAM Cyp6a21
2R	13044434	2R_13044434_SNP [dm3] 2R_17156929_SNP [dm6]	A	T	1.131e^-5	0.811	UTR_3_PRIME CG17290 & 1 other
3R	11771757	3R_11771757_SNP [dm3] 3R_15946035_SNP [dm6]	C	G	1.231e^-5	0.811	INTRON Sap47
2R	13045522	2R_13045522_SNP [dm3] 2R_17158017_SNP [dm6]	A	G	1.307e^-5	0.811	SYNONYMOUS_CODING CG17287 DOWNSTREAM CG17290 & 1 other
2R	1756321	2R_1756321_DEL [dm3] 2R_5868816_DEL [dm6]	TAGAATATTTATTCTTGATC...	T	1.514e^-5	0.811	INTERGENIC
3R	10749642	3R_10749642_SNP [dm3] 3R_14923920_SNP [dm6]	G	A	1.848e^-5	0.811	UPSTREAM CR45598 DOWNSTREAM Sdr INTERGENIC
2R	13044615	2R_13044615_SNP [dm3] 2R_17157110_SNP [dm6]	C	T	1.994e^-5	0.811	UTR_3_PRIME CG17290 & 1 other
3L	4970262	3L_4970262_SNP [dm3] 3L_4970262_SNP [dm6]	T	C	2.042e^-5	0.811	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15256763	2R_15256763_SNP [dm3] 2R_19369258_SNP [dm6]	G	A	2.179e^-5	0.811	SYNONYMOUS_CODING CG9416
3L	14317874	3L_14317874_SNP [dm3] 3L_14324774_SNP [dm6]	G	T	2.293e^-5	0.811	INTRON fz & 1 other
3L	5304768	3L_5304768_SNP [dm3] 3L_5311668_SNP [dm6]	C	T	2.328e^-5	0.811	INTERGENIC
3R	26810771	3R_26810771_SNP [dm3] 3R_30985049_SNP [dm6]	T	C	2.508e^-5	0.811	INTRON 5-HT7
2R	6651926	2R_6651926_SNP [dm3] 2R_10764421_SNP [dm6]	C	G	2.644e^-5	0.811	INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	1496625	2L_1496625_SNP [dm3] 2L_1496625_SNP [dm6]	G	T	2.684e^-5	0.811	NON_SYNONYMOUS_CODING CG31926 UPSTREAM CG31661
2R	19387981	2R_19387981_SNP [dm3] 2R_23500458_SNP [dm6]	T	C	2.916e^-5	0.811	UTR_3_PRIME CG13558	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	13797555	2R_13797555_SNP [dm3] 2R_17910050_SNP [dm6]	A	G	2.921e^-5	0.811	INTRON Elk
3L	11365439	3L_11365439_SNP [dm3] 3L_11372339_SNP [dm6]	A	T	3.208e^-5	0.811	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	3962717	2R_3962717_SNP [dm3] 2R_8075212_SNP [dm6]	C	T	3.349e^-5	0.811	INTRON lig
3L	21597451	3L_21597451_SNP [dm3] 3L_21604351_SNP [dm6]	G	A	3.552e^-5	0.811	INTRON TfAP-2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	4467407	X_4467407_INS [dm3] X_4573374_INS [dm6]	G	GATGG	3.584e^-5	0.811	INTRON CR32773
2L	5743381	2L_5743381_SNP [dm3] 2L_5743381_SNP [dm6]	A	G	3.604e^-5	0.811	INTRON CG11030
2L	5743383	2L_5743383_SNP [dm3] 2L_5743383_SNP [dm6]	T	G	3.604e^-5	0.811	INTRON CG11030
2L	5743385	2L_5743385_INS [dm3] 2L_5743385_INS [dm6]	T	TTATTCCC	3.604e^-5	0.811	INTRON CG11030
2L	2876505	2L_2876505_SNP [dm3] 2L_2876505_SNP [dm6]	G	T	3.647e^-5	0.811	DOWNSTREAM Prx6005 INTRON CG8814	TF binding site mE1_TFBS_cad
3L	14317890	3L_14317890_SNP [dm3] 3L_14324790_SNP [dm6]	C	T	3.649e^-5	0.811	INTRON fz & 1 other
3L	14153711	3L_14153711_SNP [dm3] 3L_14160611_SNP [dm6]	C	T	3.683e^-5	0.811	INTERGENIC	regulatory region REDfly_CRMs
2L	1726719	2L_1726719_SNP [dm3] 2L_1726719_SNP [dm6]	A	C	3.731e^-5	0.811	INTRON Eno	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1496604	2L_1496604_SNP [dm3] 2L_1496604_SNP [dm6]	G	A	3.754e^-5	0.811	SYNONYMOUS_CODING CG31926 UPSTREAM CG31661
3L	5372429	3L_5372429_DEL [dm3] 3L_5379329_DEL [dm6]	TGT	T	3.939e^-5	0.811	DOWNSTREAM CR45743 INTRON Ir64a
2L	5732839	2L_5732839_SNP [dm3] 2L_5732839_SNP [dm6]	T	C	4.042e^-5	0.811	DOWNSTREAM CG11147 INTRON CG11030
3L	1935129	3L_1935129_SNP [dm3] 3L_1935129_SNP [dm6]	G	A	4.201e^-5	0.811	SYNONYMOUS_CODING CG5687
2R	6651924	2R_6651924_INS [dm3] 2R_10764419_INS [dm6]	A	AAA	4.338e^-5	0.811	INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	11365311	3L_11365311_SNP [dm3] 3L_11372211_SNP [dm6]	T	C	4.396e^-5	0.811	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	12852342	2R_12852342_SNP [dm3] 2R_16964837_SNP [dm6]	A	G	4.598e^-5	0.811	EXON CR44376
2R	3955161	2R_3955161_SNP [dm3] 2R_8067656_SNP [dm6]	T	C	4.640e^-5	0.811	UPSTREAM lig & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	12686545	2R_12686545_SNP [dm3] 2R_16799040_SNP [dm6]	G	T	4.760e^-5	0.811	INTERGENIC
3R	23523173	3R_23523173_SNP [dm3] 3R_27697451_SNP [dm6]	G	A	4.764e^-5	0.811	SYNONYMOUS_CODING ALiX DOWNSTREAM CG43320	TF binding site mE1_TFBS_chinmo
3R	23523230	3R_23523230_SNP [dm3] 3R_27697508_SNP [dm6]	G	A	4.764e^-5	0.811	SYNONYMOUS_CODING ALiX	TF binding site mE1_TFBS_chinmo
2R	13044562	2R_13044562_SNP [dm3] 2R_17157057_SNP [dm6]	T	G	4.765e^-5	0.811	UTR_3_PRIME CG17290 & 1 other
X	22221270	X_22221270_SNP [dm3] X_22819434_SNP [dm6]	G	A	4.815e^-5	0.811	INTERGENIC
3L	8413602	3L_8413602_DEL [dm3] 3L_8420502_DEL [dm6]	ATGT	A	4.950e^-5	0.811	INTRON CG32354
3L	10911507	3L_10911507_SNP [dm3] 3L_10918407_SNP [dm6]	G	T	4.993e^-5	0.811	INTERGENIC
3L	13839371	3L_13839371_SNP [dm3] 3L_13846271_SNP [dm6]	A	G	4.998e^-5	0.811	NON_SYNONYMOUS_CODING Hml DOWNSTREAM Tsp68C
X	3171349	X_3171349_SNP [dm3] X_3277316_SNP [dm6]	T	C	5.091e^-5	0.811	INTRON dnc
3L	13457797	3L_13457797_SNP [dm3] 3L_13464697_SNP [dm6]	T	A	5.310e^-5	0.811	SYNONYMOUS_CODING CG10738 DOWNSTREAM CG10089	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5500753	2L_5500753_SNP [dm3] 2L_5500753_SNP [dm6]	G	C	5.511e^-5	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5500998	2L_5500998_SNP [dm3] 2L_5500998_SNP [dm6]	A	T	5.511e^-5	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14243491	3L_14243491_SNP [dm3] 3L_14250391_SNP [dm6]	A	G	5.564e^-5	0.811	INTERGENIC
X	17324232	X_17324232_SNP [dm3] X_17430199_SNP [dm6]	T	A	5.594e^-5	0.811	INTRON CG12994
2L	5743071	2L_5743071_SNP [dm3] 2L_5743071_SNP [dm6]	A	C	5.622e^-5	0.811	INTRON CG11030
2L	5743559	2L_5743559_SNP [dm3] 2L_5743559_SNP [dm6]	G	A	5.622e^-5	0.811	INTRON CG11030
3L	11365346	3L_11365346_SNP [dm3] 3L_11372246_SNP [dm6]	G	A	6.183e^-5	0.811	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	8532395	2R_8532395_DEL [dm3] 2R_12644890_DEL [dm6]	ACAGAACAA	A	6.263e^-5	0.811	INTRON CG8785	TF binding site mE1_TFBS_cad
2R	4077636	2R_4077636_SNP [dm3] 2R_8190131_SNP [dm6]	C	A	6.501e^-5	0.811	INTRON LRP1
3L	22706140	3L_22706140_SNP [dm3] 3L_22713040_SNP [dm6]	C	T	6.516e^-5	0.811	NON_SYNONYMOUS_CODING CG11370	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5743014	2L_5743014_SNP [dm3] 2L_5743014_SNP [dm6]	T	C	6.754e^-5	0.811	INTRON CG11030
2L	5743460	2L_5743460_SNP [dm3] 2L_5743460_SNP [dm6]	G	A	6.754e^-5	0.811	INTRON CG11030
2L	5743055	2L_5743055_SNP [dm3] 2L_5743055_SNP [dm6]	T	C	6.798e^-5	0.811	INTRON CG11030
2L	5743070	2L_5743070_SNP [dm3] 2L_5743070_SNP [dm6]	T	A	6.798e^-5	0.811	INTRON CG11030
2L	5743076	2L_5743076_SNP [dm3] 2L_5743076_SNP [dm6]	A	C	6.798e^-5	0.811	INTRON CG11030
2L	5743099	2L_5743099_INS [dm3] 2L_5743099_INS [dm6]	A	ATCACTTGCAAGAAAGA...	6.798e^-5	0.811	INTRON CG11030
2L	5743107	2L_5743107_SNP [dm3] 2L_5743107_SNP [dm6]	T	A	6.798e^-5	0.811	INTRON CG11030
2L	5743139	2L_5743139_SNP [dm3] 2L_5743139_SNP [dm6]	A	T	6.798e^-5	0.811	INTRON CG11030
2L	5743142	2L_5743142_SNP [dm3] 2L_5743142_SNP [dm6]	T	A	6.798e^-5	0.811	INTRON CG11030
2L	5743146	2L_5743146_INS [dm3] 2L_5743146_INS [dm6]	T	TATGTATA	6.798e^-5	0.811	INTRON CG11030
2L	5743172	2L_5743172_SNP [dm3] 2L_5743172_SNP [dm6]	T	C	6.798e^-5	0.811	INTRON CG11030
2L	5743175	2L_5743175_SNP [dm3] 2L_5743175_SNP [dm6]	A	C	6.798e^-5	0.811	INTRON CG11030
2L	5743200	2L_5743200_SNP [dm3] 2L_5743200_SNP [dm6]	G	A	6.798e^-5	0.811	INTRON CG11030
2L	5743204	2L_5743204_MNP [dm3] 2L_5743204_MNP [dm6]	CAGTT	TGAAA	6.798e^-5	0.811	INTRON CG11030
2L	5743213	2L_5743213_DEL [dm3] 2L_5743213_DEL [dm6]	TCT	AA	6.798e^-5	0.811	INTRON CG11030
2L	5743284	2L_5743284_SNP [dm3] 2L_5743284_SNP [dm6]	A	G	6.798e^-5	0.811	INTRON CG11030
2L	5743286	2L_5743286_SNP [dm3] 2L_5743286_SNP [dm6]	T	G	6.798e^-5	0.811	INTRON CG11030
2L	5743532	2L_5743532_DEL [dm3] 2L_5743532_DEL [dm6]	TGAGTTTTAGAGCA...	T	6.798e^-5	0.811	INTRON CG11030
X	11088463	X_11088463_INS [dm3] X_11194430_INS [dm6]	T	TCCACCTCCTCCTCCACCTC...	7.208e^-5	0.811	DOWNSTREAM CR44765 INTERGENIC
3L	18603674	3L_18603674_SNP [dm3] 3L_18610574_SNP [dm6]	T	G	7.396e^-5	0.811	NON_SYNONYMOUS_CODING CG32201 INTRON CG4174 & 1 other
3L	9865281	3L_9865281_SNP [dm3] 3L_9872181_SNP [dm6]	A	T	7.625e^-5	0.811	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	18843064	X_18843064_SNP [dm3] X_18949031_SNP [dm6]	T	C	7.738e^-5	0.811	INTRON CG43759	TF binding site mE1_TFBS_cad
3L	2974874	3L_2974874_SNP [dm3] 3L_2974874_SNP [dm6]	T	C	7.860e^-5	0.811	DOWNSTREAM CR44530 INTERGENIC
3L	22769890	3L_22769890_SNP [dm3] 3L_22776790_SNP [dm6]	A	G	7.894e^-5	0.811	INTRON SPoCk
3L	10098383	3L_10098383_SNP [dm3] 3L_10105283_SNP [dm6]	A	G	7.917e^-5	0.811	INTRON dpr6
3R	23532230	3R_23532230_SNP [dm3] 3R_27706508_SNP [dm6]	G	A	8.054e^-5	0.811	UPSTREAM CG12877 & 1 other INTRON CG12428	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8536282	2R_8536282_SNP [dm3] 2R_12648777_SNP [dm6]	T	C	8.083e^-5	0.811	UPSTREAM CG8785 INTERGENIC
3R	15973478	3R_15973478_SNP [dm3] 3R_20147756_SNP [dm6]	A	G	8.245e^-5	0.811	INTERGENIC
2R	5967521	2R_5967521_INS [dm3] 2R_10080016_INS [dm6]	A	AAA	8.280e^-5	0.811	DOWNSTREAM scaRNA:MeU1b-A234 INTRON egr
3L	9865253	3L_9865253_DEL [dm3] 3L_9872153_DEL [dm6]	TTATTG	T	8.342e^-5	0.811	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	17512502	2R_17512502_SNP [dm3] 2R_21624997_SNP [dm6]	A	T	8.373e^-5	0.811	UPSTREAM mahj & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	13044336	2R_13044336_SNP [dm3] 2R_17156831_SNP [dm6]	C	T	8.414e^-5	0.811	UTR_3_PRIME CG17290 & 1 other
X	3347122	X_3347122_SNP [dm3] X_3453089_SNP [dm6]	C	T	8.418e^-5	0.811	INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	535760	3L_535760_SNP [dm3] 3L_535760_SNP [dm6]	G	T	8.462e^-5	0.811	INTRON klar	TF binding site mE1_TFBS_Trl
3R	5685694	3R_5685694_SNP [dm3] 3R_9859972_SNP [dm6]	A	T	8.485e^-5	0.811	INTRON Teh1
2L	552602	2L_552602_SNP [dm3] 2L_552602_SNP [dm6]	C	A	8.693e^-5	0.811	UTR_5_PRIME Ets21C UPSTREAM Ets21C
2R	13044470	2R_13044470_SNP [dm3] 2R_17156965_SNP [dm6]	A	C	8.714e^-5	0.811	UTR_3_PRIME CG17290 & 1 other
2L	1726613	2L_1726613_SNP [dm3] 2L_1726613_SNP [dm6]	T	C	8.727e^-5	0.811	SYNONYMOUS_CODING Eno	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21830099	3R_21830099_DEL [dm3] 3R_26004377_DEL [dm6]	ATACCCCATACCCC...	A	8.810e^-5	0.811	DOWNSTREAM E_spl_mbeta-HLH EXON CR45038	TF binding site mE1_TFBS_sens
3L	14875741	3L_14875741_SNP [dm3] 3L_14882641_SNP [dm6]	C	T	8.814e^-5	0.811	DOWNSTREAM CG17839 INTERGENIC
3L	7894092	3L_7894092_SNP [dm3] 3L_7900992_SNP [dm6]	T	C	8.906e^-5	0.811	SYNONYMOUS_CODING pbl INTRON pbl
2L	5743279	2L_5743279_SNP [dm3] 2L_5743279_SNP [dm6]	G	T	8.942e^-5	0.811	INTRON CG11030
2R	1081478	2R_1081478_SNP [dm3] 2R_5193973_SNP [dm6]	T	C	8.968e^-5	0.811	INTRON Nipped-A	transposable element FlyBase
3R	26796620	3R_26796620_SNP [dm3] 3R_30970898_SNP [dm6]	C	T	9.082e^-5	0.811	SYNONYMOUS_CODING 5-HT7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16473339	2L_16473339_SNP [dm3] 2L_16473339_SNP [dm6]	G	A	9.137e^-5	0.811	SYNONYMOUS_CODING dac	TF binding site mE1_TFBS_cad
3L	12533738	3L_12533738_SNP [dm3] 3L_12540638_SNP [dm6]	G	T	9.280e^-5	0.811	INTRON sowah	TF binding site mE1_TFBS_Kr
2R	13040486	2R_13040486_SNP [dm3] 2R_17152981_SNP [dm6]	A	C	9.281e^-5	0.811	INTERGENIC
3R	1864150	3R_1864150_SNP [dm3] 3R_6038428_SNP [dm6]	C	A	9.323e^-5	0.811	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6741630	2R_6741630_SNP [dm3] 2R_10854125_SNP [dm6]	G	A	9.408e^-5	0.811	UTR_5_PRIME CG30015 INTRON CG30015 EXON CR45136
2L	2424469	2L_2424469_SNP [dm3] 2L_2424469_SNP [dm6]	A	G	9.475e^-5	0.811	UTR_3_PRIME CG9886 UPSTREAM CG44139
2L	2424530	2L_2424530_SNP [dm3] 2L_2424530_SNP [dm6]	G	T	9.475e^-5	0.811	UTR_3_PRIME CG9886 UPSTREAM CG44139
2L	2424807	2L_2424807_SNP [dm3] 2L_2424807_SNP [dm6]	C	G	9.475e^-5	0.811	START_GAINED CG44139 UTR_5_PRIME CG44139 DOWNSTREAM CG9886
2L	5743497	2L_5743497_SNP [dm3] 2L_5743497_SNP [dm6]	A	T	9.756e^-5	0.811	INTRON CG11030
2L	5743509	2L_5743509_INS [dm3] 2L_5743509_INS [dm6]	A	CG	9.756e^-5	0.811	INTRON CG11030
3L	2521514	3L_2521514_DEL [dm3] 3L_2521514_DEL [dm6]	TCCAG	T	9.912e^-5	0.811	INTRON Spn
3L	4655524	3L_4655524_SNP [dm3] 3L_4655524_SNP [dm6]	G	A	1.001e^-4	0.811	INTRON axo
2L	8849044	2L_8849044_SNP [dm3] 2L_8849044_SNP [dm6]	C	A	1.004e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
2R	15257029	2R_15257029_SNP [dm3] 2R_19369524_SNP [dm6]	T	C	1.014e^-4	0.811	SYNONYMOUS_CODING CG9416
2R	19388271	2R_19388271_SNP [dm3] 2R_23500748_SNP [dm6]	A	G	1.016e^-4	0.811	DOWNSTREAM CG13558 INTERGENIC
2R	19388275	2R_19388275_SNP [dm3] 2R_23500752_SNP [dm6]	T	G	1.016e^-4	0.811	DOWNSTREAM CG13558 INTERGENIC
3L	8522953	3L_8522953_SNP [dm3] 3L_8529853_SNP [dm6]	A	G	1.021e^-4	0.811	INTRON foi
2L	13296427	2L_13296427_SNP [dm3] 2L_13296427_SNP [dm6]	A	T	1.038e^-4	0.811	UTR_5_PRIME CG31729 INTRON CG31729	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	11771746	3R_11771746_SNP [dm3] 3R_15946024_SNP [dm6]	T	G	1.038e^-4	0.811	INTRON Sap47
2L	3708890	2L_3708890_SNP [dm3] 2L_3708890_SNP [dm6]	T	A	1.041e^-4	0.811	INTRON cutlet	TF binding site mE1_TFBS_cad
2R	12852964	2R_12852964_SNP [dm3] 2R_16965459_SNP [dm6]	T	G	1.050e^-4	0.811	DOWNSTREAM CR44376 INTERGENIC
3L	13457851	3L_13457851_SNP [dm3] 3L_13464751_SNP [dm6]	C	A	1.060e^-4	0.811	SYNONYMOUS_CODING CG10738 DOWNSTREAM CG10089	TF binding site mE1_TFBS_chinmo
3R	3996798	3R_3996798_SNP [dm3] 3R_8171076_SNP [dm6]	G	A	1.068e^-4	0.811	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	10006031	3L_10006031_SNP [dm3] 3L_10012931_SNP [dm6]	A	G	1.081e^-4	0.811	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10676402	3L_10676402_SNP [dm3] 3L_10683302_SNP [dm6]	G	A	1.104e^-4	0.811	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10251740	2L_10251740_SNP [dm3] 2L_10251740_SNP [dm6]	A	G	1.109e^-4	0.811	UPSTREAM Ror DOWNSTREAM CG31717 INTERGENIC
2R	13044844	2R_13044844_SNP [dm3] 2R_17157339_SNP [dm6]	G	A	1.114e^-4	0.811	SYNONYMOUS_CODING CG17287 DOWNSTREAM CG17290 & 1 other
X	17865041	X_17865041_SNP [dm3] X_17971008_SNP [dm6]	A	G	1.118e^-4	0.811	INTRON Sh
2R	6740549	2R_6740549_SNP [dm3] 2R_10853044_SNP [dm6]	A	G	1.130e^-4	0.811	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2R	1756408	2R_1756408_DEL [dm3] 2R_5868903_DEL [dm6]	AG	A	1.138e^-4	0.811	INTERGENIC
2R	1756412	2R_1756412_SNP [dm3] 2R_5868907_SNP [dm6]	T	G	1.138e^-4	0.811	INTERGENIC
3R	26935733	3R_26935733_SNP [dm3] 3R_31110011_SNP [dm6]	T	A	1.145e^-4	0.811	UPSTREAM CG11318 INTERGENIC
2R	14714371	2R_14714371_SNP [dm3] 2R_18826866_SNP [dm6]	T	C	1.149e^-4	0.811	INTRON CG15097
2L	6750649	2L_6750649_SNP [dm3] 2L_6750649_SNP [dm6]	T	G	1.150e^-4	0.811	INTRON CG11221
3L	11195249	3L_11195249_SNP [dm3] 3L_11202149_SNP [dm6]	G	C	1.180e^-4	0.811	UTR_3_PRIME CG14141 INTRON Plod
3L	22765270	3L_22765270_SNP [dm3] 3L_22772170_SNP [dm6]	T	A	1.180e^-4	0.811	INTRON SPoCk
X	22225007	X_22225007_SNP [dm3] X_22823171_SNP [dm6]	C	A	1.181e^-4	0.811	INTERGENIC	transposable element FlyBase
2L	1726702	2L_1726702_SNP [dm3] 2L_1726702_SNP [dm6]	T	G	1.181e^-4	0.811	INTRON Eno	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18793452	2R_18793452_SNP [dm3] 2R_22905929_SNP [dm6]	T	C	1.183e^-4	0.811	INTRON nahoda
2R	4433984	2R_4433984_SNP [dm3] 2R_8546479_SNP [dm6]	C	T	1.183e^-4	0.811	INTERGENIC
2R	4434002	2R_4434002_SNP [dm3] 2R_8546497_SNP [dm6]	G	A	1.183e^-4	0.811	INTERGENIC
3L	5812664	3L_5812664_SNP [dm3] 3L_5819564_SNP [dm6]	A	G	1.183e^-4	0.811	INTRON vn
3L	5812931	3L_5812931_SNP [dm3] 3L_5819831_SNP [dm6]	A	G	1.183e^-4	0.811	INTRON vn
3L	5813479	3L_5813479_SNP [dm3] 3L_5820379_SNP [dm6]	A	T	1.183e^-4	0.811	INTRON vn
3L	5813601	3L_5813601_SNP [dm3] 3L_5820501_SNP [dm6]	C	T	1.183e^-4	0.811	INTRON vn
3L	5814784	3L_5814784_SNP [dm3] 3L_5821684_SNP [dm6]	G	T	1.183e^-4	0.811	INTRON vn
3L	5815354	3L_5815354_SNP [dm3] 3L_5822254_SNP [dm6]	C	G	1.183e^-4	0.811	INTRON vn
X	18462720	X_18462720_SNP [dm3] X_18568687_SNP [dm6]	A	T	1.187e^-4	0.811	INTRON Bx	TF binding site mE1_TFBS_chinmo
2L	11486035	2L_11486035_SNP [dm3] 2L_11486035_SNP [dm6]	G	C	1.188e^-4	0.811	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14161742	3L_14161742_SNP [dm3] 3L_14168642_SNP [dm6]	T	G	1.209e^-4	0.811	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15911936	2R_15911936_SNP [dm3] 2R_20024431_SNP [dm6]	A	G	1.209e^-4	0.811	INTERGENIC
3L	10591684	3L_10591684_SNP [dm3] 3L_10598584_SNP [dm6]	C	T	1.215e^-4	0.811	INTERGENIC
3R	20533859	3R_20533859_SNP [dm3] 3R_24708137_SNP [dm6]	T	G	1.220e^-4	0.811	UTR_3_PRIME slo DOWNSTREAM slo
X	4467423	X_4467423_DEL [dm3] X_4573390_DEL [dm6]	GAACTG	G	1.221e^-4	0.811	INTRON CR32773
2R	1756405	2R_1756405_MNP [dm3] 2R_5868900_MNP [dm6]	TTT	AAG	1.256e^-4	0.811	INTERGENIC
3R	23532357	3R_23532357_SNP [dm3] 3R_27706635_SNP [dm6]	C	A	1.256e^-4	0.811	UTR_5_PRIME CG12428 UPSTREAM CG12877 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15353795	3L_15353795_SNP [dm3] 3L_15360695_SNP [dm6]	C	T	1.261e^-4	0.811	INTERGENIC
3L	8684329	3L_8684329_SNP [dm3] 3L_8691229_SNP [dm6]	G	A	1.268e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7986270	2L_7986270_SNP [dm3] 2L_7986270_SNP [dm6]	T	C	1.291e^-4	0.811	SYNONYMOUS_CODING CG7231 DOWNSTREAM pes
2L	525197	2L_525197_SNP [dm3] 2L_525197_SNP [dm6]	C	T	1.298e^-4	0.811	INTRON ush	TF binding site mE1_TFBS_inv mE1_TFBS_Kr
2L	5733619	2L_5733619_INS [dm3] 2L_5733619_INS [dm6]	T	TT	1.298e^-4	0.811	DOWNSTREAM CG11147 INTRON CG11030
2L	5733666	2L_5733666_SNP [dm3] 2L_5733666_SNP [dm6]	C	T	1.298e^-4	0.811	DOWNSTREAM CG11147 INTRON CG11030
3L	9062094	3L_9062094_SNP [dm3] 3L_9068994_SNP [dm6]	C	G	1.298e^-4	0.811	UTR_3_PRIME CG4911 DOWNSTREAM CG4911	TF binding site mE1_TFBS_sens
3R	16089418	3R_16089418_SNP [dm3] 3R_20263696_SNP [dm6]	A	G	1.298e^-4	0.811	INTRON cic	TF binding site BDTNP1_TFBS_dl
3R	26141337	3R_26141337_DEL [dm3] 3R_30315615_DEL [dm6]	CC	C	1.298e^-4	0.811	INTRON hdc
2R	6642513	2R_6642513_SNP [dm3] 2R_10755008_SNP [dm6]	G	C	1.299e^-4	0.811	SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_chinmo
2R	17740207	2R_17740207_SNP [dm3] 2R_21852702_SNP [dm6]	C	A	1.312e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3955020	2R_3955020_SNP [dm3] 2R_8067515_SNP [dm6]	C	T	1.316e^-4	0.811	UTR_5_PRIME CG17977 UPSTREAM lig	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	3956137	2R_3956137_SNP [dm3] 2R_8068632_SNP [dm6]	C	G	1.316e^-4	0.811	UPSTREAM CG17977 & 1 other INTRON lig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	3956194	2R_3956194_SNP [dm3] 2R_8068689_SNP [dm6]	T	C	1.316e^-4	0.811	UPSTREAM lig INTRON lig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	3958119	2R_3958119_SNP [dm3] 2R_8070614_SNP [dm6]	A	T	1.316e^-4	0.811	INTRON lig
3L	2892968	3L_2892968_SNP [dm3] 3L_2892968_SNP [dm6]	T	G	1.316e^-4	0.811	UPSTREAM spz5 INTERGENIC
3L	9765644	3L_9765644_SNP [dm3] 3L_9772544_SNP [dm6]	T	A	1.327e^-4	0.811	INTRON CG8177
3L	8647629	3L_8647629_INS [dm3] 3L_8654529_INS [dm6]	T	TACTT	1.334e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	433714	3L_433714_SNP [dm3] 3L_433714_SNP [dm6]	C	T	1.341e^-4	0.811	UTR_5_PRIME CG13891 DOWNSTREAM klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5508439	2R_5508439_SNP [dm3] 2R_9620934_SNP [dm6]	A	T	1.344e^-4	0.811	UPSTREAM mir-307b DOWNSTREAM mir-307a INTRON Mmp2
3R	22442414	3R_22442414_SNP [dm3] 3R_26616692_SNP [dm6]	T	C	1.347e^-4	0.811	INTERGENIC
3L	20148940	3L_20148940_SNP [dm3] 3L_20155840_SNP [dm6]	A	G	1.351e^-4	0.811	INTRON CG42674
X	3171248	X_3171248_SNP [dm3] X_3277215_SNP [dm6]	G	A	1.355e^-4	0.811	INTRON dnc
3L	10676607	3L_10676607_SNP [dm3] 3L_10683507_SNP [dm6]	T	C	1.356e^-4	0.811	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14246128	3L_14246128_SNP [dm3] 3L_14253028_SNP [dm6]	T	C	1.358e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	21646506	3L_21646506_SNP [dm3] 3L_21653406_SNP [dm6]	C	T	1.366e^-4	0.811	INTRON CG43980	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	1145165	3L_1145165_SNP [dm3] 3L_1145165_SNP [dm6]	A	C	1.369e^-4	0.811	INTRON bab2
3R	20308349	3R_20308349_SNP [dm3] 3R_24482627_SNP [dm6]	T	A	1.376e^-4	0.811	INTERGENIC
3R	20308388	3R_20308388_SNP [dm3] 3R_24482666_SNP [dm6]	G	A	1.390e^-4	0.811	INTERGENIC
3L	11191224	3L_11191224_SNP [dm3] 3L_11198124_SNP [dm6]	A	G	1.400e^-4	0.811	UPSTREAM GlcAT-P DOWNSTREAM Plod INTERGENIC
2R	11608247	2R_11608247_SNP [dm3] 2R_15720742_SNP [dm6]	T	A	1.404e^-4	0.811	INTERGENIC
X	11673980	X_11673980_SNP [dm3] X_11779947_SNP [dm6]	G	A	1.420e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10774664	2R_10774664_SNP [dm3] 2R_14887159_SNP [dm6]	A	G	1.420e^-4	0.811	UPSTREAM Cyp6a21 DOWNSTREAM Cyp6a8 INTERGENIC
2R	4446882	2R_4446882_SNP [dm3] 2R_8559377_SNP [dm6]	T	C	1.420e^-4	0.811	UPSTREAM CR45308 INTERGENIC
X	11677709	X_11677709_SNP [dm3] X_11783676_SNP [dm6]	T	G	1.420e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	12115290	3R_12115290_SNP [dm3] 3R_16289568_SNP [dm6]	A	C	1.421e^-4	0.811	INTRON gish	TF binding site mE1_TFBS_inv
3R	26571821	3R_26571821_SNP [dm3] 3R_30746099_SNP [dm6]	T	G	1.421e^-4	0.811	SYNONYMOUS_CODING Npc2h UPSTREAM Npc2g DOWNSTREAM CR43238	TF binding site mE1_TFBS_cad
X	11671740	X_11671740_SNP [dm3] X_11777707_SNP [dm6]	A	G	1.426e^-4	0.811	INTRON dy
2L	5733573	2L_5733573_SNP [dm3] 2L_5733573_SNP [dm6]	T	G	1.428e^-4	0.811	DOWNSTREAM CG11147 INTRON CG11030
3L	11191321	3L_11191321_SNP [dm3] 3L_11198221_SNP [dm6]	A	C	1.437e^-4	0.811	UTR_3_PRIME Plod UPSTREAM GlcAT-P
3R	1869107	3R_1869107_SNP [dm3] 3R_6043385_SNP [dm6]	A	G	1.438e^-4	0.811	INTERGENIC
2L	7192249	2L_7192249_SNP [dm3] 2L_7192249_SNP [dm6]	C	T	1.443e^-4	0.811	INTRON CG4497	TF binding site mE1_TFBS_inv
2L	2425273	2L_2425273_SNP [dm3] 2L_2425273_SNP [dm6]	G	T	1.446e^-4	0.811	DOWNSTREAM CG9886 & 1 other INTERGENIC
2L	528770	2L_528770_SNP [dm3] 2L_528770_SNP [dm6]	T	C	1.446e^-4	0.811	INTRON ush	regulatory region REDfly_CRMs
2R	3964385	2R_3964385_SNP [dm3] 2R_8076880_SNP [dm6]	G	T	1.447e^-4	0.811	UTR_3_PRIME lig INTRON lig	TF binding site mE1_TFBS_HSA
2R	17568019	2R_17568019_SNP [dm3] 2R_21680514_SNP [dm6]	A	G	1.449e^-4	0.811	SPLICE_SITE_REGION CG30263 SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17568024	2R_17568024_SNP [dm3] 2R_21680519_SNP [dm6]	G	A	1.449e^-4	0.811	SPLICE_SITE_REGION CG30263 INTRON CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15969924	3R_15969924_SNP [dm3] 3R_20144202_SNP [dm6]	A	G	1.455e^-4	0.811	INTERGENIC
3L	17099483	3L_17099483_SNP [dm3] 3L_17106383_SNP [dm6]	T	A	1.456e^-4	0.811	INTRON Rbp6
2L	5743077	2L_5743077_SNP [dm3] 2L_5743077_SNP [dm6]	C	A	1.458e^-4	0.811	INTRON CG11030
3R	26810770	3R_26810770_SNP [dm3] 3R_30985048_SNP [dm6]	C	A	1.461e^-4	0.811	INTRON 5-HT7
2R	13044841	2R_13044841_SNP [dm3] 2R_17157336_SNP [dm6]	A	G	1.493e^-4	0.811	SYNONYMOUS_CODING CG17287 DOWNSTREAM CG17290 & 1 other
2R	17652537	2R_17652537_SNP [dm3] 2R_21765032_SNP [dm6]	A	C	1.495e^-4	0.811	UPSTREAM CG30395 DOWNSTREAM CG43982 EXON CR43984	TF binding site BDTNP1_TFBS_dl
3R	22127789	3R_22127789_SNP [dm3] 3R_26302067_SNP [dm6]	A	G	1.495e^-4	0.811	INTERGENIC
3L	5813890	3L_5813890_SNP [dm3] 3L_5820790_SNP [dm6]	C	T	1.502e^-4	0.811	INTRON vn
3L	10676645	3L_10676645_SNP [dm3] 3L_10683545_SNP [dm6]	T	C	1.509e^-4	0.811	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10674618	3L_10674618_SNP [dm3] 3L_10681518_SNP [dm6]	T	C	1.516e^-4	0.811	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2R	5964633	2R_5964633_DEL [dm3] 2R_10077128_DEL [dm6]	CCTGTGGTTAC...	C	1.523e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	16956476	2L_16956476_SNP [dm3] 2L_16956476_SNP [dm6]	G	T	1.535e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15080243	2R_15080243_SNP [dm3] 2R_19192738_SNP [dm6]	C	T	1.540e^-4	0.811	INTRON hppy
3L	12406416	3L_12406416_SNP [dm3] 3L_12413316_SNP [dm6]	T	G	1.545e^-4	0.811	INTRON CG32103
2R	17685916	2R_17685916_SNP [dm3] 2R_21798411_SNP [dm6]	G	A	1.546e^-4	0.811	SYNONYMOUS_CODING CG18735 DOWNSTREAM CG4386	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15270667	2R_15270667_SNP [dm3] 2R_19383162_SNP [dm6]	G	C	1.551e^-4	0.811	SYNONYMOUS_CODING CG10073
2R	15270691	2R_15270691_SNP [dm3] 2R_19383186_SNP [dm6]	A	T	1.551e^-4	0.811	SYNONYMOUS_CODING CG10073
2R	15270721	2R_15270721_SNP [dm3] 2R_19383216_SNP [dm6]	C	T	1.551e^-4	0.811	SYNONYMOUS_CODING CG10073
2R	6737616	2R_6737616_SNP [dm3] 2R_10850111_SNP [dm6]	T	C	1.556e^-4	0.811	INTRON CG30015	TF binding site BDTNP1_TFBS_dl
3R	26781285	3R_26781285_SNP [dm3] 3R_30955563_SNP [dm6]	G	C	1.557e^-4	0.811	INTERGENIC
2R	6648645	2R_6648645_SNP [dm3] 2R_10761140_SNP [dm6]	T	C	1.562e^-4	0.811	INTRON CG33144 & 1 other
2L	3400740	2L_3400740_SNP [dm3] 2L_3400740_SNP [dm6]	C	T	1.574e^-4	0.811	INTERGENIC
2L	3408503	2L_3408503_SNP [dm3] 2L_3408503_SNP [dm6]	G	C	1.574e^-4	0.811	INTRON pgant2
2L	9557704	2L_9557704_SNP [dm3] 2L_9557704_SNP [dm6]	G	A	1.574e^-4	0.811	INTRON jp
3R	19239703	3R_19239703_SNP [dm3] 3R_23413981_SNP [dm6]	C	T	1.574e^-4	0.811	INTRON CG4374
3L	8656652	3L_8656652_SNP [dm3] 3L_8663552_SNP [dm6]	G	A	1.577e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16956287	2L_16956287_SNP [dm3] 2L_16956287_SNP [dm6]	A	C	1.578e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16686662	2R_16686662_DEL [dm3] 2R_20799157_DEL [dm6]	TATTTAAATC	T	1.582e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5876835	3L_5876835_SNP [dm3] 3L_5883735_SNP [dm6]	C	T	1.588e^-4	0.811	SYNONYMOUS_CODING CG13287	TF binding site mE1_TFBS_cad
3L	11098269	3L_11098269_SNP [dm3] 3L_11105169_SNP [dm6]	T	G	1.594e^-4	0.811	INTERGENIC
3L	14383040	3L_14383040_SNP [dm3] 3L_14389940_SNP [dm6]	A	G	1.645e^-4	0.811	INTERGENIC
2L	10986910	2L_10986910_DEL [dm3] 2L_10986910_DEL [dm6]	ATT	A	1.648e^-4	0.811	UPSTREAM CG12253 INTRON piwi
3R	22422124	3R_22422124_SNP [dm3] 3R_26596402_SNP [dm6]	C	T	1.652e^-4	0.811	DOWNSTREAM scrib INTRON scrib
X	13862724	X_13862724_SNP [dm3] X_13968691_SNP [dm6]	G	A	1.657e^-4	0.811	INTRON mamo
2R	1046111	2R_1046111_SNP [dm3] 2R_5158606_SNP [dm6]	C	G	1.658e^-4	0.811	INTERGENIC	transposable element FlyBase
3L	22751686	3L_22751686_SNP [dm3] 3L_22758586_SNP [dm6]	A	G	1.666e^-4	0.811	INTRON SPoCk
3L	22752911	3L_22752911_INS [dm3] 3L_22759811_INS [dm6]	G	GTCTCTGTCT	1.666e^-4	0.811	UPSTREAM SPoCk INTRON SPoCk
3L	22762933	3L_22762933_INS [dm3] 3L_22769833_INS [dm6]	T	TC	1.666e^-4	0.811	INTRON SPoCk	TF binding site mE1_TFBS_inv
3L	22772605	3L_22772605_SNP [dm3] 3L_22779505_SNP [dm6]	A	G	1.666e^-4	0.811	INTRON SPoCk
3L	22772766	3L_22772766_SNP [dm3] 3L_22779666_SNP [dm6]	T	G	1.666e^-4	0.811	INTRON SPoCk
3R	19003895	3R_19003895_SNP [dm3] 3R_23178173_SNP [dm6]	T	C	1.679e^-4	0.811	UPSTREAM Irk1 INTRON Irk1
2R	9832886	2R_9832886_SNP [dm3] 2R_13945381_SNP [dm6]	A	T	1.684e^-4	0.811	UTR_3_PRIME AGO1 DOWNSTREAM AGO1
X	22226286	X_22226286_SNP [dm3] X_22824450_SNP [dm6]	T	C	1.695e^-4	0.811	UTR_3_PRIME fog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_zfh1
2L	5743085	2L_5743085_SNP [dm3] 2L_5743085_SNP [dm6]	T	G	1.704e^-4	0.811	INTRON CG11030
2R	3954623	2R_3954623_DEL [dm3] 2R_8067118_DEL [dm6]	TAACTCACCAAAAATAGTTT...	T	1.710e^-4	0.811	SPLICE_SITE_DONOR CG17977 CODON_DELETION CG17977 SPLICE_SITE_REGION CG17977 UPSTREAM lig INTRON CG17977	TF binding site BDTNP1_TFBS_dl
2R	1412310	2R_1412310_SNP [dm3] 2R_5524805_SNP [dm6]	T	C	1.729e^-4	0.811	UPSTREAM CG30438 INTRON CG30438
3L	13889822	3L_13889822_SNP [dm3] 3L_13896722_SNP [dm6]	T	C	1.735e^-4	0.811	INTRON dysc
2L	5018242	2L_5018242_SNP [dm3] 2L_5018242_SNP [dm6]	C	T	1.743e^-4	0.811	SYNONYMOUS_CODING vkg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14637420	X_14637420_SNP [dm3] X_14743387_SNP [dm6]	G	A	1.743e^-4	0.811	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10298640	2R_10298640_SNP [dm3] 2R_14411135_SNP [dm6]	A	G	1.744e^-4	0.811	SYNONYMOUS_CODING CG17385 UPSTREAM Sin1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11587364	3R_11587364_SNP [dm3] 3R_15761642_SNP [dm6]	G	A	1.751e^-4	0.811	INTERGENIC
3R	11751158	3R_11751158_SNP [dm3] 3R_15925436_SNP [dm6]	G	C	1.755e^-4	0.811	UPSTREAM CG34276 INTRON CG4221
3R	11751177	3R_11751177_SNP [dm3] 3R_15925455_SNP [dm6]	A	T	1.755e^-4	0.811	UPSTREAM CG34276 INTRON CG4221
2L	2272037	2L_2272037_SNP [dm3] 2L_2272037_SNP [dm6]	G	C	1.756e^-4	0.811	EXON CR43753
2L	544471	2L_544471_SNP [dm3] 2L_544471_SNP [dm6]	C	T	1.759e^-4	0.811	SYNONYMOUS_CODING Spp UPSTREAM nAChRbeta3 DOWNSTREAM Ets21C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5742358	2L_5742358_DEL [dm3] 2L_5742358_DEL [dm6]	TT	T	1.759e^-4	0.811	INTRON CG11030	TF binding site mE1_TFBS_inv
3L	14154546	3L_14154546_SNP [dm3] 3L_14161446_SNP [dm6]	G	T	1.759e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs
2L	5743108	2L_5743108_SNP [dm3] 2L_5743108_SNP [dm6]	C	T	1.772e^-4	0.811	INTRON CG11030
2L	5743150	2L_5743150_SNP [dm3] 2L_5743150_SNP [dm6]	T	A	1.772e^-4	0.811	INTRON CG11030
2R	16435589	2R_16435589_SNP [dm3] 2R_20548084_SNP [dm6]	A	G	1.773e^-4	0.811	NON_SYNONYMOUS_CODING Obp57e UPSTREAM CG30148 DOWNSTREAM Cpr57A & 1 other
2R	3962677	2R_3962677_SNP [dm3] 2R_8075172_SNP [dm6]	G	T	1.803e^-4	0.811	INTRON lig
2R	3962678	2R_3962678_SNP [dm3] 2R_8075173_SNP [dm6]	C	T	1.803e^-4	0.811	INTRON lig
3L	4242130	3L_4242130_SNP [dm3] 3L_4242130_SNP [dm6]	T	A	1.804e^-4	0.811	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4242326	3L_4242326_SNP [dm3] 3L_4242326_SNP [dm6]	A	C	1.804e^-4	0.811	SYNONYMOUS_CODING CG14997 UPSTREAM pav	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	600388	3L_600388_SNP [dm3] 3L_600388_SNP [dm6]	C	T	1.827e^-4	0.811	SYNONYMOUS_CODING CG13893	TF binding site mE1_TFBS_inv
2R	10830448	2R_10830448_DEL [dm3] 2R_14942943_DEL [dm6]	TT	T	1.838e^-4	0.811	UTR_5_PRIME CG10257
2R	13544948	2R_13544948_SNP [dm3] 2R_17657443_SNP [dm6]	A	G	1.838e^-4	0.811	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	13544967	2R_13544967_DEL [dm3] 2R_17657462_DEL [dm6]	AG	A	1.838e^-4	0.811	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	7204974	2R_7204974_SNP [dm3] 2R_11317469_SNP [dm6]	C	G	1.838e^-4	0.811	NON_SYNONYMOUS_CODING nompA
3L	10911372	3L_10911372_SNP [dm3] 3L_10918272_SNP [dm6]	C	T	1.838e^-4	0.811	INTERGENIC
3L	14316544	3L_14316544_SNP [dm3] 3L_14323444_SNP [dm6]	T	C	1.838e^-4	0.811	INTRON fz & 1 other
3L	15567919	3L_15567919_SNP [dm3] 3L_15574819_SNP [dm6]	G	T	1.838e^-4	0.811	SYNONYMOUS_CODING CG6498	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15448046	2R_15448046_SNP [dm3] 2R_19560541_SNP [dm6]	G	A	1.840e^-4	0.811	INTRON sm
3L	4637228	3L_4637228_INS [dm3] 3L_4637228_INS [dm6]	C	CGC	1.847e^-4	0.811	UTR_3_PRIME axo INTRON axo
3R	24762360	3R_24762360_SNP [dm3] 3R_28936638_SNP [dm6]	T	C	1.862e^-4	0.811	INTRON CG14521
2R	15828018	2R_15828018_SNP [dm3] 2R_19940513_SNP [dm6]	T	A	1.872e^-4	0.811	EXON CR43421	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	23522830	3R_23522830_SNP [dm3] 3R_27697108_SNP [dm6]	A	T	1.881e^-4	0.811	DOWNSTREAM CG43320 INTRON ALiX	TF binding site mE1_TFBS_chinmo
3R	23522835	3R_23522835_SNP [dm3] 3R_27697113_SNP [dm6]	C	A	1.881e^-4	0.811	DOWNSTREAM CG43320 INTRON ALiX	TF binding site mE1_TFBS_chinmo
3R	23522854	3R_23522854_SNP [dm3] 3R_27697132_SNP [dm6]	C	T	1.881e^-4	0.811	SPLICE_SITE_REGION ALiX DOWNSTREAM CG43320 INTRON ALiX	TF binding site mE1_TFBS_chinmo
3R	18697026	3R_18697026_SNP [dm3] 3R_22871304_SNP [dm6]	G	A	1.884e^-4	0.811	INTERGENIC
2L	1437561	2L_1437561_SNP [dm3] 2L_1437561_SNP [dm6]	C	T	1.889e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5815341	3L_5815341_DEL [dm3] 3L_5822241_DEL [dm6]	AA	A	1.902e^-4	0.811	INTRON vn
2L	8322253	2L_8322253_SNP [dm3] 2L_8322253_SNP [dm6]	A	T	1.907e^-4	0.811	DOWNSTREAM CG7787 INTRON CG7781	TF binding site mE1_TFBS_cad
3L	10676092	3L_10676092_SNP [dm3] 3L_10682992_SNP [dm6]	G	T	1.914e^-4	0.811	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21151521	3L_21151521_SNP [dm3] 3L_21158421_SNP [dm6]	T	C	1.929e^-4	0.811	INTRON Ac78C	TF binding site mE1_TFBS_inv
2L	3856501	2L_3856501_SNP [dm3] 2L_3856501_SNP [dm6]	C	T	1.942e^-4	0.811	EXON CR45450	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	14997361	3L_14997361_SNP [dm3] 3L_15004261_SNP [dm6]	C	T	1.956e^-4	0.811	SYNONYMOUS_CODING Reck	TF binding site mE1_TFBS_cad
3L	7198763	3L_7198763_SNP [dm3] 3L_7205663_SNP [dm6]	G	T	1.965e^-4	0.811	INTERGENIC
3L	10685195	3L_10685195_SNP [dm3] 3L_10692095_SNP [dm6]	T	G	1.965e^-4	0.811	UTR_3_PRIME CG11811 DOWNSTREAM CG33493
3R	22131897	3R_22131897_SNP [dm3] 3R_26306175_SNP [dm6]	G	T	1.985e^-4	0.811	INTERGENIC
X	3171101	X_3171101_SNP [dm3] X_3277068_SNP [dm6]	T	G	1.990e^-4	0.811	INTRON dnc
2L	8232590	2L_8232590_INS [dm3] 2L_8232590_INS [dm6]	T	GC	1.993e^-4	0.811	INTRON Pvr
3R	2467572	3R_2467572_SNP [dm3] 3R_6641850_SNP [dm6]	T	C	1.998e^-4	0.811	SPLICE_SITE_REGION CG31286 DOWNSTREAM CG1315 INTRON CG31286	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20860996	3L_20860996_SNP [dm3] 3L_20867896_SNP [dm6]	T	C	1.999e^-4	0.811	INTRON CG32432
3R	22747303	3R_22747303_INS [dm3] 3R_26921581_INS [dm6]	A	AG	2.004e^-4	0.811	INTRON sda
3L	18142950	3L_18142950_SNP [dm3] 3L_18149850_SNP [dm6]	T	C	2.011e^-4	0.811	INTRON CG7330
3L	16508319	3L_16508319_SNP [dm3] 3L_16515219_SNP [dm6]	A	G	2.039e^-4	0.811	INTRON CG43373
3R	22419623	3R_22419623_SNP [dm3] 3R_26593901_SNP [dm6]	A	T	2.045e^-4	0.811	INTRON scrib
X	18462699	X_18462699_DEL [dm3] X_18568666_DEL [dm6]	ACCACGTTA	A	2.052e^-4	0.811	INTRON Bx	TF binding site mE1_TFBS_chinmo
2L	11485417	2L_11485417_SNP [dm3] 2L_11485417_SNP [dm6]	C	T	2.072e^-4	0.811	NON_SYNONYMOUS_CODING CG43355 UTR_5_PRIME sala UPSTREAM sala	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18620813	3R_18620813_SNP [dm3] 3R_22795091_SNP [dm6]	A	G	2.091e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	5500989	2L_5500989_SNP [dm3] 2L_5500989_SNP [dm6]	T	A	2.104e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9989757	3L_9989757_SNP [dm3] 3L_9996657_SNP [dm6]	G	A	2.112e^-4	0.811	INTRON dpr6
X	17163269	X_17163269_INS [dm3] X_17269236_INS [dm6]	G	GTACTAGTGCG...	2.112e^-4	0.811	INTRON f
X	18965504	X_18965504_SNP [dm3] X_19071471_SNP [dm6]	G	A	2.112e^-4	0.811	INTERGENIC
3R	22442830	3R_22442830_SNP [dm3] 3R_26617108_SNP [dm6]	C	T	2.114e^-4	0.811	INTERGENIC
X	19041415	X_19041415_SNP [dm3] X_19147382_SNP [dm6]	A	G	2.125e^-4	0.811	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1294173	2R_1294173_SNP [dm3] 2R_5406668_SNP [dm6]	C	A	2.128e^-4	0.811	INTERGENIC	transposable element FlyBase
2L	15248135	2L_15248135_SNP [dm3] 2L_15248135_SNP [dm6]	A	T	2.165e^-4	0.811	UPSTREAM ZnT35C & 1 other INTERGENIC
X	11670435	X_11670435_SNP [dm3] X_11776402_SNP [dm6]	A	T	2.176e^-4	0.811	INTRON dy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3956973	2R_3956973_SNP [dm3] 2R_8069468_SNP [dm6]	C	T	2.177e^-4	0.811	UPSTREAM lig INTRON lig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	15380760	3L_15380760_SNP [dm3] 3L_15387660_SNP [dm6]	T	A	2.189e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17939359	3L_17939359_SNP [dm3] 3L_17946259_SNP [dm6]	A	C	2.189e^-4	0.811	DOWNSTREAM CG43174 & 1 other INTERGENIC
2L	14071524	2L_14071524_SNP [dm3] 2L_14071524_SNP [dm6]	G	T	2.194e^-4	0.811	INTRON nAChRalpha5	TF binding site mE1_TFBS_HSA
3L	9513969	3L_9513969_SNP [dm3] 3L_9520869_SNP [dm6]	G	A	2.195e^-4	0.811	INTRON CG33700
3L	9732193	3L_9732193_SNP [dm3] 3L_9739093_SNP [dm6]	C	T	2.195e^-4	0.811	NON_SYNONYMOUS_CODING CG42268 UTR_5_PRIME CG42268	TF binding site mE1_TFBS_cad
3L	21599350	3L_21599350_SNP [dm3] 3L_21606250_SNP [dm6]	T	A	2.200e^-4	0.811	INTRON TfAP-2	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	12406434	3L_12406434_SNP [dm3] 3L_12413334_SNP [dm6]	T	C	2.208e^-4	0.811	INTRON CG32103
3L	13873844	3L_13873844_SNP [dm3] 3L_13880744_SNP [dm6]	T	A	2.217e^-4	0.811	INTRON dysc & 1 other
2R	6643230	2R_6643230_SNP [dm3] 2R_10755725_SNP [dm6]	T	A	2.219e^-4	0.811	SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23150272	3R_23150272_SNP [dm3] 3R_27324550_SNP [dm6]	A	T	2.223e^-4	0.811	INTERGENIC
3R	20308389	3R_20308389_SNP [dm3] 3R_24482667_SNP [dm6]	T	A	2.232e^-4	0.811	INTERGENIC
2L	3982000	2L_3982000_DEL [dm3] 2L_3982000_DEL [dm6]	CGCGCGCTTAAA...	C	2.236e^-4	0.811	INTRON fred
2R	3957007	2R_3957007_SNP [dm3] 2R_8069502_SNP [dm6]	C	T	2.238e^-4	0.811	UPSTREAM lig INTRON lig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	23532243	3R_23532243_SNP [dm3] 3R_27706521_SNP [dm6]	A	G	2.238e^-4	0.811	UPSTREAM CG12877 & 1 other INTRON CG12428	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23312617	3R_23312617_SNP [dm3] 3R_27486895_SNP [dm6]	T	G	2.251e^-4	0.811	INTERGENIC
3R	23312623	3R_23312623_DEL [dm3] 3R_27486901_DEL [dm6]	TG	T	2.251e^-4	0.811	INTERGENIC
3R	23312626	3R_23312626_DEL [dm3] 3R_27486904_DEL [dm6]	AAATCGTTTTG...	A	2.251e^-4	0.811	INTERGENIC
3R	23312641	3R_23312641_SNP [dm3] 3R_27486919_SNP [dm6]	T	C	2.251e^-4	0.811	INTERGENIC
3R	23312643	3R_23312643_DEL [dm3] 3R_27486921_DEL [dm6]	TTTGGTAAG	T	2.251e^-4	0.811	UPSTREAM Gr98a INTERGENIC
3R	23312662	3R_23312662_DEL [dm3] 3R_27486940_DEL [dm6]	TC	T	2.251e^-4	0.811	UPSTREAM Gr98a INTERGENIC
3L	21593495	3L_21593495_SNP [dm3] 3L_21600395_SNP [dm6]	T	G	2.257e^-4	0.811	INTRON TfAP-2
3L	12734760	3L_12734760_DEL [dm3] 3L_12741660_DEL [dm6]	TT	T	2.258e^-4	0.811	UPSTREAM CG32112 DOWNSTREAM Ptp69D INTERGENIC
X	18462621	X_18462621_SNP [dm3] X_18568588_SNP [dm6]	T	A	2.260e^-4	0.811	INTRON Bx	TF binding site mE1_TFBS_chinmo
2R	19180716	2R_19180716_SNP [dm3] 2R_23293193_SNP [dm6]	A	C	2.270e^-4	0.811	INTERGENIC
3R	14721332	3R_14721332_SNP [dm3] 3R_18895610_SNP [dm6]	G	C	2.293e^-4	0.811	INTERGENIC
X	11670102	X_11670102_SNP [dm3] X_11776069_SNP [dm6]	G	A	2.298e^-4	0.811	INTRON dy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11670452	X_11670452_SNP [dm3] X_11776419_SNP [dm6]	T	G	2.298e^-4	0.811	INTRON dy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	11670528	X_11670528_SNP [dm3] X_11776495_SNP [dm6]	T	C	2.298e^-4	0.811	INTRON dy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	11672020	X_11672020_SNP [dm3] X_11777987_SNP [dm6]	A	C	2.298e^-4	0.811	INTRON dy
2R	19388331	2R_19388331_SNP [dm3] 2R_23500808_SNP [dm6]	C	T	2.298e^-4	0.811	DOWNSTREAM CG13558 INTERGENIC
2R	801219	2R_801219_SNP [dm3] 2R_4913714_SNP [dm6]	A	C	2.318e^-4	0.811	INTERGENIC	transposable element FlyBase
2R	6649971	2R_6649971_SNP [dm3] 2R_10762466_SNP [dm6]	A	G	2.323e^-4	0.811	DOWNSTREAM CR43605 INTRON CG33144
X	12677003	X_12677003_SNP [dm3] X_12782970_SNP [dm6]	T	G	2.338e^-4	0.811	INTRON CG32647
3R	19137795	3R_19137795_SNP [dm3] 3R_23312073_SNP [dm6]	G	A	2.353e^-4	0.811	SYNONYMOUS_CODING pnt
3R	5963179	3R_5963179_SNP [dm3] 3R_10137457_SNP [dm6]	A	T	2.353e^-4	0.811	INTRON tws
3R	5963181	3R_5963181_SNP [dm3] 3R_10137459_SNP [dm6]	T	A	2.353e^-4	0.811	INTRON tws
2L	4449812	2L_4449812_SNP [dm3] 2L_4449812_SNP [dm6]	A	C	2.355e^-4	0.811	NON_SYNONYMOUS_CODING CG15439	TF binding site mE1_TFBS_cad
3L	14243279	3L_14243279_SNP [dm3] 3L_14250179_SNP [dm6]	G	A	2.362e^-4	0.811	INTERGENIC
2R	13635933	2R_13635933_SNP [dm3] 2R_17748428_SNP [dm6]	C	A	2.366e^-4	0.811	UPSTREAM CG10931 & 1 other INTERGENIC
3L	18487483	3L_18487483_INS [dm3] 3L_18494383_INS [dm6]	A	AAATCAAAAACCAAA...	2.368e^-4	0.811	INTRON AstC-R2
2R	18353643	2R_18353643_SNP [dm3] 2R_22466138_SNP [dm6]	T	A	2.386e^-4	0.811	INTRON CG10384
X	3295798	X_3295798_SNP [dm3] X_3401765_SNP [dm6]	A	G	2.389e^-4	0.811	INTRON CR44999 & 1 other
3R	23522799	3R_23522799_DEL [dm3] 3R_27697077_DEL [dm6]	AA	G	2.390e^-4	0.811	SPLICE_SITE_REGION ALiX DOWNSTREAM CG43320 INTRON ALiX	TF binding site mE1_TFBS_chinmo
2L	1023827	2L_1023827_SNP [dm3] 2L_1023827_SNP [dm6]	T	A	2.394e^-4	0.811	INTRON IA-2
X	16479392	X_16479392_DEL [dm3] X_16585359_DEL [dm6]	AGGAATAA	A	2.430e^-4	0.811	INTRON CanA-14F
3L	4242128	3L_4242128_SNP [dm3] 3L_4242128_SNP [dm6]	G	T	2.431e^-4	0.811	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14154548	3L_14154548_SNP [dm3] 3L_14161448_SNP [dm6]	A	C	2.433e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs
X	18877372	X_18877372_SNP [dm3] X_18983339_SNP [dm6]	T	C	2.436e^-4	0.811	INTRON CG43759
2R	13002550	2R_13002550_SNP [dm3] 2R_17115045_SNP [dm6]	A	G	2.443e^-4	0.811	DOWNSTREAM CG15611 INTERGENIC
X	12642158	X_12642158_SNP [dm3] X_12748125_SNP [dm6]	T	C	2.445e^-4	0.811	UTR_3_PRIME CG4004 DOWNSTREAM CG4004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	747944	3L_747944_SNP [dm3] 3L_747944_SNP [dm6]	C	G	2.446e^-4	0.811	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	17099270	3L_17099270_SNP [dm3] 3L_17106170_SNP [dm6]	T	C	2.449e^-4	0.811	INTRON Rbp6
X	11670470	X_11670470_SNP [dm3] X_11776437_SNP [dm6]	T	G	2.452e^-4	0.811	INTRON dy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5812884	3L_5812884_SNP [dm3] 3L_5819784_SNP [dm6]	T	C	2.456e^-4	0.811	INTRON vn
X	3197519	X_3197519_SNP [dm3] X_3303486_SNP [dm6]	C	A	2.468e^-4	0.811	INTRON dnc
X	11671912	X_11671912_SNP [dm3] X_11777879_SNP [dm6]	G	C	2.479e^-4	0.811	INTRON dy
2L	6053616	2L_6053616_SNP [dm3] 2L_6053616_SNP [dm6]	A	C	2.489e^-4	0.811	UTR_3_PRIME CG9135 UPSTREAM CG13995 DOWNSTREAM CG9135
X	11677680	X_11677680_SNP [dm3] X_11783647_SNP [dm6]	T	A	2.503e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6146417	3L_6146417_SNP [dm3] 3L_6153317_SNP [dm6]	A	G	2.504e^-4	0.811	UPSTREAM Acp65Aa INTERGENIC
2L	1726714	2L_1726714_SNP [dm3] 2L_1726714_SNP [dm6]	A	G	2.504e^-4	0.811	INTRON Eno	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5251641	2L_5251641_SNP [dm3] 2L_5251641_SNP [dm6]	T	C	2.514e^-4	0.811	INTRON tkv
2L	5251643	2L_5251643_SNP [dm3] 2L_5251643_SNP [dm6]	G	A	2.514e^-4	0.811	INTRON tkv
X	17484757	X_17484757_SNP [dm3] X_17590724_SNP [dm6]	T	A	2.514e^-4	0.811	NON_SYNONYMOUS_CODING CG12992 INTRON CG12991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17484785	X_17484785_SNP [dm3] X_17590752_SNP [dm6]	G	C	2.514e^-4	0.811	NON_SYNONYMOUS_CODING CG12992 INTRON CG12991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12310194	3L_12310194_SNP [dm3] 3L_12317094_SNP [dm6]	G	A	2.516e^-4	0.811	INTERGENIC
X	19053696	X_19053696_DEL [dm3] X_19159663_DEL [dm6]	AT	A	2.518e^-4	0.811	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20444924	X_20444924_SNP [dm3] X_20573897_SNP [dm6]	C	T	2.520e^-4	0.811	UPSTREAM CG42580 INTERGENIC
3L	14317932	3L_14317932_SNP [dm3] 3L_14324832_SNP [dm6]	G	C	2.521e^-4	0.811	INTRON fz & 1 other
X	18462620	X_18462620_SNP [dm3] X_18568587_SNP [dm6]	A	G	2.522e^-4	0.811	INTRON Bx	TF binding site mE1_TFBS_chinmo
2L	7266909	2L_7266909_SNP [dm3] 2L_7266909_SNP [dm6]	G	C	2.525e^-4	0.811	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi
3L	12406414	3L_12406414_SNP [dm3] 3L_12413314_SNP [dm6]	G	T	2.528e^-4	0.811	INTRON CG32103
3L	3017673	3L_3017673_SNP [dm3] 3L_3017673_SNP [dm6]	T	A	2.560e^-4	0.811	UPSTREAM CG32487 INTERGENIC
3L	12436822	3L_12436822_SNP [dm3] 3L_12443722_SNP [dm6]	A	T	2.565e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14979353	3L_14979353_SNP [dm3] 3L_14986253_SNP [dm6]	G	A	2.575e^-4	0.811	INTRON mnd	TF binding site mE1_TFBS_cad
2R	15910629	2R_15910629_SNP [dm3] 2R_20023124_SNP [dm6]	A	G	2.578e^-4	0.811	INTERGENIC
2R	6646817	2R_6646817_SNP [dm3] 2R_10759312_SNP [dm6]	G	A	2.580e^-4	0.811	INTRON CG33144
2R	6647206	2R_6647206_SNP [dm3] 2R_10759701_SNP [dm6]	G	T	2.580e^-4	0.811	INTRON CG33144
2R	6648562	2R_6648562_SNP [dm3] 2R_10761057_SNP [dm6]	A	T	2.580e^-4	0.811	INTRON CG33144 EXON CR43605
2R	6648699	2R_6648699_SNP [dm3] 2R_10761194_SNP [dm6]	G	T	2.580e^-4	0.811	INTRON CG33144 EXON CR43605
2R	6649834	2R_6649834_SNP [dm3] 2R_10762329_SNP [dm6]	T	C	2.580e^-4	0.811	DOWNSTREAM CR43605 INTRON CG33144
3R	25300665	3R_25300665_SNP [dm3] 3R_29474943_SNP [dm6]	G	C	2.582e^-4	0.811	INTRON Ptp99A
2R	12060631	2R_12060631_SNP [dm3] 2R_16173126_SNP [dm6]	G	T	2.589e^-4	0.811	NON_SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
2R	6645239	2R_6645239_SNP [dm3] 2R_10757734_SNP [dm6]	G	A	2.591e^-4	0.811	INTRON CG33144	TF binding site mE1_TFBS_chinmo
3L	14772309	3L_14772309_SNP [dm3] 3L_14779209_SNP [dm6]	G	A	2.591e^-4	0.811	INTRON bmm
3L	19044761	3L_19044761_SNP [dm3] 3L_19051661_SNP [dm6]	C	A	2.594e^-4	0.811	NON_SYNONYMOUS_CODING Acp76A UPSTREAM CR44675	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1484441	3L_1484441_INS [dm3] 3L_1484441_INS [dm6]	T	TCGT	2.606e^-4	0.811	INTRON stet	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	15248211	2L_15248211_SNP [dm3] 2L_15248211_SNP [dm6]	C	T	2.631e^-4	0.811	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	15248233	2L_15248233_SNP [dm3] 2L_15248233_SNP [dm6]	G	C	2.631e^-4	0.811	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	10406002	2L_10406002_SNP [dm3] 2L_10406002_SNP [dm6]	C	T	2.634e^-4	0.811	SYNONYMOUS_CODING Ir31a UPSTREAM LSm-4 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	10408865	2L_10408865_SNP [dm3] 2L_10408865_SNP [dm6]	G	A	2.634e^-4	0.811	SYNONYMOUS_CODING Ip259 DOWNSTREAM Ir31a INTRON RpS27A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2L	1332657	2L_1332657_SNP [dm3] 2L_1332657_SNP [dm6]	G	A	2.634e^-4	0.811	INTERGENIC
2L	18842198	2L_18842198_SNP [dm3] 2L_18842198_SNP [dm6]	C	T	2.634e^-4	0.811	SYNONYMOUS_CODING CG33120 UPSTREAM CG31752	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19714400	2L_19714400_DEL [dm3] 2L_19714400_DEL [dm6]	AA	A	2.634e^-4	0.811	INTRON Lar
2L	5749400	2L_5749400_SNP [dm3] 2L_5749400_SNP [dm6]	G	A	2.634e^-4	0.811	INTRON CG11030	TF binding site BDTNP1_TFBS_twi
2L	5757208	2L_5757208_SNP [dm3] 2L_5757208_SNP [dm6]	C	T	2.634e^-4	0.811	INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	578472	2L_578472_SNP [dm3] 2L_578472_SNP [dm6]	T	A	2.634e^-4	0.811	INTRON Pph13	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	578481	2L_578481_SNP [dm3] 2L_578481_SNP [dm6]	C	T	2.634e^-4	0.811	INTRON Pph13	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	595247	2L_595247_SNP [dm3] 2L_595247_SNP [dm6]	G	A	2.634e^-4	0.811	UPSTREAM Gsc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5966647	2L_5966647_SNP [dm3] 2L_5966647_SNP [dm6]	G	A	2.634e^-4	0.811	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6837707	2L_6837707_SNP [dm3] 2L_6837707_SNP [dm6]	T	C	2.634e^-4	0.811	INTRON sens-2
2L	6837757	2L_6837757_SNP [dm3] 2L_6837757_SNP [dm6]	C	T	2.634e^-4	0.811	INTRON sens-2
2L	8229536	2L_8229536_SNP [dm3] 2L_8229536_SNP [dm6]	G	T	2.634e^-4	0.811	INTRON Pvr
2L	8230483	2L_8230483_SNP [dm3] 2L_8230483_SNP [dm6]	A	T	2.634e^-4	0.811	INTRON Pvr
2L	8230493	2L_8230493_INS [dm3] 2L_8230493_INS [dm6]	G	GG	2.634e^-4	0.811	INTRON Pvr
2L	8602621	2L_8602621_SNP [dm3] 2L_8602621_SNP [dm6]	G	A	2.634e^-4	0.811	INTRON Sema-1a
2L	9593202	2L_9593202_SNP [dm3] 2L_9593202_SNP [dm6]	C	T	2.634e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	10335049	2R_10335049_SNP [dm3] 2R_14447544_SNP [dm6]	T	A	2.634e^-4	0.811	INTRON Oaz	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	10335209	2R_10335209_SNP [dm3] 2R_14447704_SNP [dm6]	A	C	2.634e^-4	0.811	INTRON Oaz	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	10879563	2R_10879563_SNP [dm3] 2R_14992058_SNP [dm6]	C	G	2.634e^-4	0.811	UTR_5_PRIME CG7639 DOWNSTREAM CG10265 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	12443061	2R_12443061_DEL [dm3] 2R_16555556_DEL [dm6]	AATCTTACGTA...	A	2.634e^-4	0.811	INTRON Syn2
2R	13046449	2R_13046449_SNP [dm3] 2R_17158944_SNP [dm6]	C	T	2.634e^-4	0.811	UPSTREAM CG17287 INTRON CG30458	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16430354	2R_16430354_SNP [dm3] 2R_20542849_SNP [dm6]	A	T	2.634e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17712021	2R_17712021_SNP [dm3] 2R_21824516_SNP [dm6]	G	C	2.634e^-4	0.811	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18433074	2R_18433074_SNP [dm3] 2R_22545569_SNP [dm6]	C	G	2.634e^-4	0.811	INTRON px	TF binding site BDTNP1_TFBS_dl
2R	18458956	2R_18458956_SNP [dm3] 2R_22571451_SNP [dm6]	A	G	2.634e^-4	0.811	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	2683849	2R_2683849_SNP [dm3] 2R_6796344_SNP [dm6]	T	A	2.634e^-4	0.811	INTRON Epac
2R	2683863	2R_2683863_SNP [dm3] 2R_6796358_SNP [dm6]	C	T	2.634e^-4	0.811	INTRON Epac
2R	6276305	2R_6276305_SNP [dm3] 2R_10388800_SNP [dm6]	G	A	2.634e^-4	0.811	INTRON CG42732
2R	8604572	2R_8604572_SNP [dm3] 2R_12717067_SNP [dm6]	T	G	2.634e^-4	0.811	INTRON CG42663	TF binding site mE1_TFBS_inv
3L	11370241	3L_11370241_SNP [dm3] 3L_11377141_SNP [dm6]	T	C	2.634e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11516189	3L_11516189_SNP [dm3] 3L_11523089_SNP [dm6]	C	T	2.634e^-4	0.811	UTR_3_PRIME Mob2 UPSTREAM CG11714	TF binding site mE1_TFBS_bab1
3L	12578604	3L_12578604_SNP [dm3] 3L_12585504_SNP [dm6]	T	A	2.634e^-4	0.811	INTRON ara	TF binding site BDTNP1_TFBS_dl
3L	15698442	3L_15698442_SNP [dm3] 3L_15705342_SNP [dm6]	A	G	2.634e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18737360	3L_18737360_SNP [dm3] 3L_18744260_SNP [dm6]	C	T	2.634e^-4	0.811	UPSTREAM CG6885 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3L	2200935	3L_2200935_SNP [dm3] 3L_2200935_SNP [dm6]	C	A	2.634e^-4	0.811	INTERGENIC
3L	22820713	3L_22820713_SNP [dm3] 3L_22827613_SNP [dm6]	T	C	2.634e^-4	0.811	INTRON jim
3L	566601	3L_566601_SNP [dm3] 3L_566601_SNP [dm6]	G	A	2.634e^-4	0.811	INTRON hipk
3L	7067614	3L_7067614_SNP [dm3] 3L_7074514_SNP [dm6]	A	T	2.634e^-4	0.811	INTRON CG8641 & 1 other
3L	9100625	3L_9100625_SNP [dm3] 3L_9107525_SNP [dm6]	G	A	2.634e^-4	0.811	INTRON bol
3L	9424618	3L_9424618_SNP [dm3] 3L_9431518_SNP [dm6]	T	A	2.634e^-4	0.811	INTRON MTF-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10605378	3R_10605378_SNP [dm3] 3R_14779656_SNP [dm6]	G	T	2.634e^-4	0.811	INTRON jvl	TF binding site mE1_TFBS_HSA
3R	12081882	3R_12081882_SNP [dm3] 3R_16256160_SNP [dm6]	G	T	2.634e^-4	0.811	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12114671	3R_12114671_SNP [dm3] 3R_16288949_SNP [dm6]	C	T	2.634e^-4	0.811	UPSTREAM gish INTRON gish	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15239904	3R_15239904_SNP [dm3] 3R_19414182_SNP [dm6]	A	C	2.634e^-4	0.811	INTRON CG31221	TF binding site mE1_TFBS_inv
3R	15239970	3R_15239970_SNP [dm3] 3R_19414248_SNP [dm6]	A	G	2.634e^-4	0.811	INTRON CG31221	TF binding site mE1_TFBS_inv
3R	16024652	3R_16024652_SNP [dm3] 3R_20198930_SNP [dm6]	C	T	2.634e^-4	0.811	INTERGENIC
3R	16107097	3R_16107097_SNP [dm3] 3R_20281375_SNP [dm6]	A	C	2.634e^-4	0.811	INTRON cic
3R	17905338	3R_17905338_SNP [dm3] 3R_22079616_SNP [dm6]	C	T	2.634e^-4	0.811	UPSTREAM CG13408 DOWNSTREAM how INTERGENIC
3R	18486486	3R_18486486_INS [dm3] 3R_22660764_INS [dm6]	T	TG	2.634e^-4	0.811	INTRON CG45058
3R	19497669	3R_19497669_SNP [dm3] 3R_23671947_SNP [dm6]	T	A	2.634e^-4	0.811	INTERGENIC
3R	19497763	3R_19497763_SNP [dm3] 3R_23672041_SNP [dm6]	T	A	2.634e^-4	0.811	INTERGENIC
3R	19497911	3R_19497911_SNP [dm3] 3R_23672189_SNP [dm6]	G	T	2.634e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22418644	3R_22418644_SNP [dm3] 3R_26592922_SNP [dm6]	G	A	2.634e^-4	0.811	INTRON scrib
3R	22418705	3R_22418705_SNP [dm3] 3R_26592983_SNP [dm6]	A	C	2.634e^-4	0.811	INTRON scrib
3R	22418713	3R_22418713_SNP [dm3] 3R_26592991_SNP [dm6]	A	G	2.634e^-4	0.811	INTRON scrib
3R	22418917	3R_22418917_SNP [dm3] 3R_26593195_SNP [dm6]	C	T	2.634e^-4	0.811	INTRON scrib
3R	22418959	3R_22418959_SNP [dm3] 3R_26593237_SNP [dm6]	G	A	2.634e^-4	0.811	INTRON scrib
3R	22419500	3R_22419500_SNP [dm3] 3R_26593778_SNP [dm6]	A	G	2.634e^-4	0.811	INTRON scrib
3R	22419658	3R_22419658_SNP [dm3] 3R_26593936_SNP [dm6]	C	T	2.634e^-4	0.811	INTRON scrib
3R	22441401	3R_22441401_SNP [dm3] 3R_26615679_SNP [dm6]	G	A	2.634e^-4	0.811	INTERGENIC
3R	22447383	3R_22447383_SNP [dm3] 3R_26621661_SNP [dm6]	A	T	2.634e^-4	0.811	UPSTREAM TwdlP DOWNSTREAM TwdlB INTERGENIC
3R	22447533	3R_22447533_SNP [dm3] 3R_26621811_SNP [dm6]	T	C	2.634e^-4	0.811	UPSTREAM TwdlP DOWNSTREAM TwdlB INTERGENIC
3R	22447968	3R_22447968_SNP [dm3] 3R_26622246_SNP [dm6]	G	A	2.634e^-4	0.811	UPSTREAM TwdlP DOWNSTREAM TwdlB INTERGENIC
3R	22595967	3R_22595967_SNP [dm3] 3R_26770245_SNP [dm6]	T	A	2.634e^-4	0.811	DOWNSTREAM CR45563 INTERGENIC
3R	23685767	3R_23685767_SNP [dm3] 3R_27860045_SNP [dm6]	A	G	2.634e^-4	0.811	INTRON CG34353
3R	24605499	3R_24605499_SNP [dm3] 3R_28779777_SNP [dm6]	G	A	2.634e^-4	0.811	INTERGENIC
3R	26132922	3R_26132922_SNP [dm3] 3R_30307200_SNP [dm6]	G	A	2.634e^-4	0.811	UPSTREAM CG34300 INTRON hdc
3R	26436235	3R_26436235_DEL [dm3] 3R_30610513_DEL [dm6]	CTCTGGTGTCT...	C	2.634e^-4	0.811	DOWNSTREAM CG31016 INTERGENIC
3R	26671686	3R_26671686_SNP [dm3] 3R_30845964_SNP [dm6]	T	A	2.634e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	26673140	3R_26673140_SNP [dm3] 3R_30847418_SNP [dm6]	G	A	2.634e^-4	0.811	INTERGENIC
3R	26676392	3R_26676392_SNP [dm3] 3R_30850670_SNP [dm6]	C	G	2.634e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26676395	3R_26676395_DEL [dm3] 3R_30850673_DEL [dm6]	TT	G	2.634e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9592103	3R_9592103_SNP [dm3] 3R_13766381_SNP [dm6]	C	T	2.634e^-4	0.811	NON_SYNONYMOUS_CODING CG9312
X	15382124	X_15382124_SNP [dm3] X_15488091_SNP [dm6]	G	A	2.634e^-4	0.811	INTRON Gmap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15382198	X_15382198_SNP [dm3] X_15488165_SNP [dm6]	G	A	2.634e^-4	0.811	INTRON Gmap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15382206	X_15382206_SNP [dm3] X_15488173_SNP [dm6]	A	G	2.634e^-4	0.811	INTRON Gmap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15382219	X_15382219_SNP [dm3] X_15488186_SNP [dm6]	T	C	2.634e^-4	0.811	INTRON Gmap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	15386696	X_15386696_INS [dm3] X_15492663_INS [dm6]	C	CAAAAGACAGTC...	2.634e^-4	0.811	INTRON Gmap
X	16071591	X_16071591_SNP [dm3] X_16177558_SNP [dm6]	T	A	2.634e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA
X	17163099	X_17163099_SNP [dm3] X_17269066_SNP [dm6]	A	G	2.634e^-4	0.811	INTRON f
X	17163147	X_17163147_SNP [dm3] X_17269114_SNP [dm6]	A	T	2.634e^-4	0.811	INTRON f
X	17163224	X_17163224_SNP [dm3] X_17269191_SNP [dm6]	T	A	2.634e^-4	0.811	INTRON f
X	18964452	X_18964452_SNP [dm3] X_19070419_SNP [dm6]	C	T	2.634e^-4	0.811	INTERGENIC
X	18965387	X_18965387_SNP [dm3] X_19071354_SNP [dm6]	G	A	2.634e^-4	0.811	INTERGENIC
X	18965463	X_18965463_DEL [dm3] X_19071430_DEL [dm6]	GTGC	G	2.634e^-4	0.811	INTERGENIC
X	18965468	X_18965468_SNP [dm3] X_19071435_SNP [dm6]	T	A	2.634e^-4	0.811	INTERGENIC
X	18965487	X_18965487_SNP [dm3] X_19071454_SNP [dm6]	G	A	2.634e^-4	0.811	INTERGENIC
X	18965488	X_18965488_SNP [dm3] X_19071455_SNP [dm6]	G	A	2.634e^-4	0.811	INTERGENIC
X	18965541	X_18965541_SNP [dm3] X_19071508_SNP [dm6]	G	C	2.634e^-4	0.811	INTERGENIC
X	19528801	X_19528801_SNP [dm3] X_19634768_SNP [dm6]	G	C	2.634e^-4	0.811	NON_SYNONYMOUS_CODING e_y_3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19549624	X_19549624_SNP [dm3] X_19655591_SNP [dm6]	G	A	2.634e^-4	0.811	SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_chinmo
X	19550326	X_19550326_SNP [dm3] X_19656293_SNP [dm6]	G	A	2.634e^-4	0.811	SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19550611	X_19550611_SNP [dm3] X_19656578_SNP [dm6]	T	G	2.634e^-4	0.811	SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad
X	20537244	X_20537244_SNP [dm3] X_20666217_SNP [dm6]	T	C	2.634e^-4	0.811	INTRON CG1835	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21119508	X_21119508_SNP [dm3] X_21248481_SNP [dm6]	A	C	2.634e^-4	0.811	INTRON CG32521
X	21119512	X_21119512_SNP [dm3] X_21248485_SNP [dm6]	A	T	2.634e^-4	0.811	INTRON CG32521
X	5975032	X_5975032_SNP [dm3] X_6080999_SNP [dm6]	C	T	2.634e^-4	0.811	INTRON CG4660	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8432694	X_8432694_SNP [dm3] X_8538661_SNP [dm6]	G	T	2.634e^-4	0.811	INTRON Nrg
X	18476066	X_18476066_INS [dm3] X_18582033_INS [dm6]	C	CTTCCCC	2.637e^-4	0.811	INTERGENIC
3L	9424703	3L_9424703_INS [dm3] 3L_9431603_INS [dm6]	A	AA	2.640e^-4	0.811	INTRON MTF-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13462864	3L_13462864_SNP [dm3] 3L_13469764_SNP [dm6]	T	C	2.641e^-4	0.811	UPSTREAM CG10089 INTRON CG10089
3L	10432767	3L_10432767_INS [dm3] 3L_10439667_INS [dm6]	A	AA	2.664e^-4	0.811	INTERGENIC
3L	5365484	3L_5365484_INS [dm3] 3L_5372384_INS [dm6]	A	ATTA	2.668e^-4	0.811	UPSTREAM CR44516 INTERGENIC
2R	10188146	2R_10188146_SNP [dm3] 2R_14300641_SNP [dm6]	C	T	2.680e^-4	0.811	SYNONYMOUS_CODING tej DOWNSTREAM Ih
X	22198241	X_22198241_SNP [dm3] X_22796405_SNP [dm6]	A	T	2.685e^-4	0.811	INTRON CR44997	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15912639	2R_15912639_SNP [dm3] 2R_20025134_SNP [dm6]	A	G	2.688e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6652799	2R_6652799_SNP [dm3] 2R_10765294_SNP [dm6]	T	A	2.702e^-4	0.811	INTRON CG33144
2R	6653339	2R_6653339_SNP [dm3] 2R_10765834_SNP [dm6]	G	T	2.702e^-4	0.811	INTRON CG33144
2R	6654756	2R_6654756_SNP [dm3] 2R_10767251_SNP [dm6]	T	C	2.702e^-4	0.811	INTRON CG33144
2R	6654869	2R_6654869_SNP [dm3] 2R_10767364_SNP [dm6]	C	T	2.702e^-4	0.811	INTRON CG33144
2R	6656903	2R_6656903_SNP [dm3] 2R_10769398_SNP [dm6]	A	T	2.702e^-4	0.811	INTRON CG33144
3L	1600865	3L_1600865_SNP [dm3] 3L_1600865_SNP [dm6]	T	A	2.702e^-4	0.811	UTR_3_PRIME CG12104 DOWNSTREAM CG12104 & 1 other
3L	1600889	3L_1600889_SNP [dm3] 3L_1600889_SNP [dm6]	G	C	2.702e^-4	0.811	UTR_3_PRIME CG12104 DOWNSTREAM CG12104 & 1 other
3L	1600897	3L_1600897_DEL [dm3] 3L_1600897_DEL [dm6]	GG	G	2.702e^-4	0.811	UTR_3_PRIME CG12104 DOWNSTREAM CG12104 & 1 other
3L	22426251	3L_22426251_SNP [dm3] 3L_22433151_SNP [dm6]	C	G	2.702e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	715649	3L_715649_SNP [dm3] 3L_715649_SNP [dm6]	G	T	2.702e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12929723	X_12929723_SNP [dm3] X_13035690_SNP [dm6]	A	G	2.702e^-4	0.811	INTRON rad
2L	3570081	2L_3570081_SNP [dm3] 2L_3570081_SNP [dm6]	T	G	2.703e^-4	0.811	INTERGENIC
2L	3570082	2L_3570082_SNP [dm3] 2L_3570082_SNP [dm6]	C	T	2.703e^-4	0.811	INTERGENIC
2L	3570087	2L_3570087_SNP [dm3] 2L_3570087_SNP [dm6]	G	C	2.703e^-4	0.811	INTERGENIC
3L	15609972	3L_15609972_SNP [dm3] 3L_15616872_SNP [dm6]	G	A	2.710e^-4	0.811	INTRON comm3
2R	15127730	2R_15127730_SNP [dm3] 2R_19240225_SNP [dm6]	G	T	2.717e^-4	0.811	SYNONYMOUS_CODING cora INTRON cora	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6655343	2R_6655343_SNP [dm3] 2R_10767838_SNP [dm6]	G	A	2.727e^-4	0.811	INTRON CG33144
3L	1600567	3L_1600567_SNP [dm3] 3L_1600567_SNP [dm6]	C	T	2.727e^-4	0.811	UTR_3_PRIME CG13917 DOWNSTREAM CG12104 & 1 other
3L	6455916	3L_6455916_SNP [dm3] 3L_6462816_SNP [dm6]	C	G	2.727e^-4	0.811	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
2R	11521058	2R_11521058_SNP [dm3] 2R_15633553_SNP [dm6]	C	T	2.729e^-4	0.811	INTRON CG42524
2L	16955278	2L_16955278_DEL [dm3] 2L_16955278_DEL [dm6]	TGGACTGGCA	C	2.736e^-4	0.811	INTERGENIC
3R	11250349	3R_11250349_SNP [dm3] 3R_15424627_SNP [dm6]	A	G	2.737e^-4	0.811	SYNONYMOUS_CODING CG6118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10607802	3R_10607802_SNP [dm3] 3R_14782080_SNP [dm6]	T	A	2.742e^-4	0.811	INTRON jvl
2L	4139871	2L_4139871_SNP [dm3] 2L_4139871_SNP [dm6]	A	T	2.744e^-4	0.811	INTERGENIC
2L	5757291	2L_5757291_SNP [dm3] 2L_5757291_SNP [dm6]	G	C	2.744e^-4	0.811	INTRON CG11030	TF binding site BDTNP1_TFBS_twi
3L	14772310	3L_14772310_SNP [dm3] 3L_14779210_SNP [dm6]	T	C	2.744e^-4	0.811	INTRON bmm
3R	26571827	3R_26571827_SNP [dm3] 3R_30746105_SNP [dm6]	A	G	2.744e^-4	0.811	SYNONYMOUS_CODING Npc2h UPSTREAM Npc2g DOWNSTREAM CR43238	TF binding site mE1_TFBS_cad
X	4356234	X_4356234_SNP [dm3] X_4462201_SNP [dm6]	C	A	2.744e^-4	0.811	INTRON bi & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9020123	X_9020123_SNP [dm3] X_9126090_SNP [dm6]	G	A	2.744e^-4	0.811	SYNONYMOUS_CODING fend	TF binding site BDTNP1_TFBS_dl
2L	5518426	2L_5518426_SNP [dm3] 2L_5518426_SNP [dm6]	C	G	2.746e^-4	0.811	SYNONYMOUS_CODING CG14020 DOWNSTREAM CG7382	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	22760723	3L_22760723_SNP [dm3] 3L_22767623_SNP [dm6]	G	C	2.752e^-4	0.811	INTRON SPoCk
2R	3964354	2R_3964354_SNP [dm3] 2R_8076849_SNP [dm6]	A	G	2.757e^-4	0.811	UTR_3_PRIME lig INTRON lig	TF binding site mE1_TFBS_HSA
2L	5265670	2L_5265670_SNP [dm3] 2L_5265670_SNP [dm6]	G	A	2.762e^-4	0.811	SYNONYMOUS_CODING Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_HSA
2R	6555807	2R_6555807_SNP [dm3] 2R_10668302_SNP [dm6]	T	C	2.762e^-4	0.811	INTERGENIC
3L	15609499	3L_15609499_SNP [dm3] 3L_15616399_SNP [dm6]	C	T	2.762e^-4	0.811	INTRON comm3
3L	9101625	3L_9101625_SNP [dm3] 3L_9108525_SNP [dm6]	C	T	2.762e^-4	0.811	INTRON bol
2L	7254976	2L_7254976_SNP [dm3] 2L_7254976_SNP [dm6]	A	G	2.766e^-4	0.811	DOWNSTREAM Wnt4 INTERGENIC	TF binding site mE1_TFBS_inv
2L	7255330	2L_7255330_SNP [dm3] 2L_7255330_SNP [dm6]	C	T	2.766e^-4	0.811	DOWNSTREAM Wnt4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7256888	2L_7256888_SNP [dm3] 2L_7256888_SNP [dm6]	C	G	2.766e^-4	0.811	SYNONYMOUS_CODING Wnt4 UPSTREAM CG31909	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2L	7265533	2L_7265533_SNP [dm3] 2L_7265533_SNP [dm6]	C	T	2.766e^-4	0.811	INTRON Wnt4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7266300	2L_7266300_SNP [dm3] 2L_7266300_SNP [dm6]	G	A	2.766e^-4	0.811	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi
2L	7267135	2L_7267135_SNP [dm3] 2L_7267135_SNP [dm6]	G	A	2.766e^-4	0.811	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3437264	2L_3437264_SNP [dm3] 2L_3437264_SNP [dm6]	C	G	2.769e^-4	0.811	INTERGENIC
3L	13145307	3L_13145307_SNP [dm3] 3L_13152207_SNP [dm6]	C	A	2.775e^-4	0.811	INTERGENIC
3L	13145353	3L_13145353_SNP [dm3] 3L_13152253_SNP [dm6]	G	C	2.775e^-4	0.811	INTERGENIC
3R	20308677	3R_20308677_SNP [dm3] 3R_24482955_SNP [dm6]	G	A	2.780e^-4	0.811	INTERGENIC
2R	12116051	2R_12116051_SNP [dm3] 2R_16228546_SNP [dm6]	T	C	2.783e^-4	0.811	SYNONYMOUS_CODING Tsf3 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	22239748	X_22239748_SNP [dm3] X_22837912_SNP [dm6]	A	T	2.814e^-4	0.811	INTRON fog & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15239654	3R_15239654_SNP [dm3] 3R_19413932_SNP [dm6]	A	T	2.817e^-4	0.811	INTRON CG31221	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26467717	3R_26467717_SNP [dm3] 3R_30641995_SNP [dm6]	G	C	2.827e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16168289	2R_16168289_SNP [dm3] 2R_20280784_SNP [dm6]	T	C	2.842e^-4	0.811	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
3R	23686093	3R_23686093_SNP [dm3] 3R_27860371_SNP [dm6]	G	A	2.864e^-4	0.811	INTRON CG34353
3L	18143016	3L_18143016_SNP [dm3] 3L_18149916_SNP [dm6]	C	G	2.866e^-4	0.811	INTRON CG7330
3L	18143017	3L_18143017_SNP [dm3] 3L_18149917_SNP [dm6]	A	T	2.866e^-4	0.811	INTRON CG7330
3L	18143019	3L_18143019_SNP [dm3] 3L_18149919_SNP [dm6]	A	C	2.866e^-4	0.811	INTRON CG7330
3R	5663533	3R_5663533_SNP [dm3] 3R_9837811_SNP [dm6]	G	A	2.868e^-4	0.811	INTRON Teh1
3L	2023313	3L_2023313_SNP [dm3] 3L_2023313_SNP [dm6]	A	G	2.868e^-4	0.811	SYNONYMOUS_CODING CG42356
X	17166513	X_17166513_SNP [dm3] X_17272480_SNP [dm6]	G	A	2.870e^-4	0.811	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3963356	2R_3963356_SNP [dm3] 2R_8075851_SNP [dm6]	C	A	2.875e^-4	0.811	INTRON lig	TF binding site mE1_TFBS_HSA
2R	3965136	2R_3965136_SNP [dm3] 2R_8077631_SNP [dm6]	A	G	2.875e^-4	0.811	DOWNSTREAM lig INTRON lig
3L	5305132	3L_5305132_SNP [dm3] 3L_5312032_SNP [dm6]	T	A	2.890e^-4	0.811	INTERGENIC
3L	592860	3L_592860_SNP [dm3] 3L_592860_SNP [dm6]	C	A	2.891e^-4	0.811	UPSTREAM MED14 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	909370	2L_909370_SNP [dm3] 2L_909370_SNP [dm6]	G	A	2.892e^-4	0.811	INTERGENIC
X	22241995	X_22241995_DEL [dm3] X_22840159_DEL [dm6]	TGGGGAGGTAATAT...	T	2.899e^-4	0.811	INTRON fog & 1 other
X	19044435	X_19044435_DEL [dm3] X_19150402_DEL [dm6]	AA	A	2.909e^-4	0.811	INTRON RhoGAP18B
2R	13544963	2R_13544963_SNP [dm3] 2R_17657458_SNP [dm6]	C	T	2.914e^-4	0.811	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	8679024	3L_8679024_SNP [dm3] 3L_8685924_SNP [dm6]	G	T	2.916e^-4	0.811	INTERGENIC
2R	9442399	2R_9442399_SNP [dm3] 2R_13554894_SNP [dm6]	T	C	2.921e^-4	0.811	INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	10296411	2L_10296411_SNP [dm3] 2L_10296411_SNP [dm6]	G	T	2.928e^-4	0.811	INTRON CYLD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12601401	X_12601401_SNP [dm3] X_12707368_SNP [dm6]	A	G	2.934e^-4	0.811	NON_SYNONYMOUS_CODING CG15725 INTRON Smr	TF binding site BDTNP1_TFBS_dl
2R	3965887	2R_3965887_SNP [dm3] 2R_8078382_SNP [dm6]	T	A	2.942e^-4	0.811	UTR_3_PRIME lig DOWNSTREAM Vps28
3L	13455552	3L_13455552_SNP [dm3] 3L_13462452_SNP [dm6]	A	G	2.952e^-4	0.811	SYNONYMOUS_CODING CG10738	TF binding site mE1_TFBS_cad
3L	13455573	3L_13455573_SNP [dm3] 3L_13462473_SNP [dm6]	C	T	2.952e^-4	0.811	SYNONYMOUS_CODING CG10738	TF binding site mE1_TFBS_cad
3L	13455579	3L_13455579_SNP [dm3] 3L_13462479_SNP [dm6]	G	A	2.952e^-4	0.811	SYNONYMOUS_CODING CG10738	TF binding site mE1_TFBS_cad
3L	13455582	3L_13455582_SNP [dm3] 3L_13462482_SNP [dm6]	T	A	2.952e^-4	0.811	SYNONYMOUS_CODING CG10738	TF binding site mE1_TFBS_cad
2R	1352419	2R_1352419_SNP [dm3] 2R_5464914_SNP [dm6]	G	T	2.954e^-4	0.811	INTERGENIC	transposable element FlyBase
2L	4274175	2L_4274175_INS [dm3] 2L_4274175_INS [dm6]	T	TC	2.961e^-4	0.811	INTERGENIC
2L	4986096	2L_4986096_SNP [dm3] 2L_4986096_SNP [dm6]	C	T	2.961e^-4	0.811	SYNONYMOUS_CODING CG34126	TF binding site mE1_TFBS_cad
3L	1131203	3L_1131203_SNP [dm3] 3L_1131203_SNP [dm6]	A	C	2.961e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs
X	5459364	X_5459364_SNP [dm3] X_5565331_SNP [dm6]	T	C	2.961e^-4	0.811	INTERGENIC
2R	12442778	2R_12442778_SNP [dm3] 2R_16555273_SNP [dm6]	C	A	2.970e^-4	0.811	INTRON Syn2
3L	15698556	3L_15698556_SNP [dm3] 3L_15705456_SNP [dm6]	A	G	2.970e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_cad
3L	8128505	3L_8128505_SNP [dm3] 3L_8135405_SNP [dm6]	C	G	2.970e^-4	0.811	NON_SYNONYMOUS_CODING CG7504 INTRON CG7504
2R	6646133	2R_6646133_INS [dm3] 2R_10758628_INS [dm6]	T	TTTCTTCAATTTCTTTCGTT...	2.983e^-4	0.811	INTRON CG33144
2L	15373066	2L_15373066_SNP [dm3] 2L_15373066_SNP [dm6]	C	A	2.985e^-4	0.811	INTERGENIC
2L	3276330	2L_3276330_SNP [dm3] 2L_3276330_SNP [dm6]	G	A	2.985e^-4	0.811	SYNONYMOUS_CODING CG3332	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17924139	2R_17924139_SNP [dm3] 2R_22036634_SNP [dm6]	C	T	2.985e^-4	0.811	DOWNSTREAM CG9308 INTRON CG34370
3L	555223	3L_555223_SNP [dm3] 3L_555223_SNP [dm6]	C	G	2.985e^-4	0.811	INTRON hipk
3R	15239895	3R_15239895_SNP [dm3] 3R_19414173_SNP [dm6]	T	C	2.985e^-4	0.811	INTRON CG31221	TF binding site mE1_TFBS_inv
3R	24605385	3R_24605385_SNP [dm3] 3R_28779663_SNP [dm6]	C	T	2.985e^-4	0.811	INTERGENIC
X	12944338	X_12944338_SNP [dm3] X_13050305_SNP [dm6]	A	G	2.985e^-4	0.811	INTRON rad
X	18964430	X_18964430_SNP [dm3] X_19070397_SNP [dm6]	A	C	2.985e^-4	0.811	INTERGENIC
X	18964440	X_18964440_SNP [dm3] X_19070407_SNP [dm6]	T	A	2.985e^-4	0.811	INTERGENIC
X	18966389	X_18966389_SNP [dm3] X_19072356_SNP [dm6]	C	T	2.985e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14161322	3L_14161322_SNP [dm3] 3L_14168222_SNP [dm6]	C	A	2.988e^-4	0.811	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs
X	11822988	X_11822988_SNP [dm3] X_11928955_SNP [dm6]	A	G	2.990e^-4	0.811	SYNONYMOUS_CODING CG10362
3R	26799900	3R_26799900_SNP [dm3] 3R_30974178_SNP [dm6]	C	G	2.993e^-4	0.811	INTRON 5-HT7
3L	14316561	3L_14316561_SNP [dm3] 3L_14323461_SNP [dm6]	C	T	2.996e^-4	0.811	INTRON fz & 1 other
3L	18534706	3L_18534706_SNP [dm3] 3L_18541606_SNP [dm6]	G	C	2.997e^-4	0.811	INTERGENIC
2R	9958860	2R_9958860_SNP [dm3] 2R_14071355_SNP [dm6]	T	A	3.002e^-4	0.811	INTRON Prosap
3L	16210857	3L_16210857_SNP [dm3] 3L_16217757_SNP [dm6]	G	A	3.003e^-4	0.811	UPSTREAM CG13073 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2456238	2R_2456238_SNP [dm3] 2R_6568733_SNP [dm6]	G	T	3.017e^-4	0.811	INTRON jing	TF binding site BDTNP1_TFBS_twi
X	18966536	X_18966536_SNP [dm3] X_19072503_SNP [dm6]	C	A	3.019e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10212839	2L_10212839_SNP [dm3] 2L_10212839_SNP [dm6]	A	G	3.024e^-4	0.811	SYNONYMOUS_CODING CG4901 DOWNSTREAM Npc1a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2200891	3L_2200891_SNP [dm3] 3L_2200891_SNP [dm6]	G	C	3.027e^-4	0.811	INTERGENIC
3L	4693096	3L_4693096_SNP [dm3] 3L_4693096_SNP [dm6]	G	C	3.029e^-4	0.811	UTR_5_PRIME RhoGEF64C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	15098151	3R_15098151_SNP [dm3] 3R_19272429_SNP [dm6]	T	A	3.030e^-4	0.811	INTERGENIC
2R	20213787	2R_20213787_SNP [dm3] 2R_24326264_SNP [dm6]	A	G	3.031e^-4	0.811	INTRON CR44810
X	909129	X_909129_SNP [dm3] X_1015096_SNP [dm6]	G	C	3.032e^-4	0.811	INTRON su_w[a]_ & 1 other
3L	15896819	3L_15896819_SNP [dm3] 3L_15903719_SNP [dm6]	T	C	3.041e^-4	0.811	INTRON sff
3R	13904876	3R_13904876_SNP [dm3] 3R_18079154_SNP [dm6]	G	A	3.043e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	15912765	2R_15912765_SNP [dm3] 2R_20025260_SNP [dm6]	A	G	3.044e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	19044387	X_19044387_DEL [dm3] X_19150354_DEL [dm6]	TCCAG	T	3.071e^-4	0.811	INTRON RhoGAP18B
3R	23312659	3R_23312659_SNP [dm3] 3R_27486937_SNP [dm6]	G	T	3.071e^-4	0.811	UPSTREAM Gr98a INTERGENIC
3R	6905168	3R_6905168_SNP [dm3] 3R_11079446_SNP [dm6]	T	C	3.077e^-4	0.811	INTERGENIC
X	21886689	X_21886689_SNP [dm3] X_22484853_SNP [dm6]	T	C	3.079e^-4	0.811	INTRON Cp110	transposable element FlyBase
3L	18250390	3L_18250390_SNP [dm3] 3L_18257290_SNP [dm6]	A	G	3.085e^-4	0.811	INTERGENIC
X	3444106	X_3444106_SNP [dm3] X_3550073_SNP [dm6]	A	T	3.092e^-4	0.811	INTRON CG32791
2R	2444729	2R_2444729_SNP [dm3] 2R_6557224_SNP [dm6]	T	A	3.096e^-4	0.811	INTRON jing
3R	15974992	3R_15974992_SNP [dm3] 3R_20149270_SNP [dm6]	T	A	3.101e^-4	0.811	INTERGENIC
2R	12114374	2R_12114374_SNP [dm3] 2R_16226869_SNP [dm6]	A	T	3.111e^-4	0.811	UPSTREAM CG15706 INTRON CG15706 & 1 other
3R	20308374	3R_20308374_SNP [dm3] 3R_24482652_SNP [dm6]	C	A	3.116e^-4	0.811	INTERGENIC
3R	20932299	3R_20932299_SNP [dm3] 3R_25106577_SNP [dm6]	G	A	3.117e^-4	0.811	SYNONYMOUS_CODING CG34027
2R	11905612	2R_11905612_SNP [dm3] 2R_16018107_SNP [dm6]	C	A	3.124e^-4	0.811	UPSTREAM CG8397 INTRON CG8399
2L	5748350	2L_5748350_SNP [dm3] 2L_5748350_SNP [dm6]	A	G	3.129e^-4	0.811	DOWNSTREAM CG11029 INTRON CG11030
2L	7264171	2L_7264171_SNP [dm3] 2L_7264171_SNP [dm6]	A	G	3.129e^-4	0.811	INTRON Wnt4	TF binding site mE1_TFBS_HSA
2L	781011	2L_781011_DEL [dm3] 2L_781011_DEL [dm6]	CACAGCTTTTGATTAGCACT...	C	3.129e^-4	0.811	UTR_5_PRIME Gr21a UPSTREAM Gr21a	TF binding site mE1_TFBS_chinmo
2L	8849087	2L_8849087_SNP [dm3] 2L_8849087_SNP [dm6]	G	T	3.129e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
2R	215852	2R_215852_SNP [dm3] 2R_4328347_SNP [dm6]	C	T	3.129e^-4	0.811	INTRON Gprk1
3L	586973	3L_586973_SNP [dm3] 3L_586973_SNP [dm6]	C	A	3.129e^-4	0.811	INTRON Kah
3R	26374740	3R_26374740_SNP [dm3] 3R_30549018_SNP [dm6]	G	A	3.145e^-4	0.811	INTRON tmod
X	19360832	X_19360832_SNP [dm3] X_19466799_SNP [dm6]	C	A	3.149e^-4	0.811	INTRON kek5
3R	24121253	3R_24121253_SNP [dm3] 3R_28295531_SNP [dm6]	A	G	3.149e^-4	0.811	UPSTREAM CR44229 DOWNSTREAM CG17856 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5070721	2R_5070721_SNP [dm3] 2R_9183216_SNP [dm6]	C	G	3.154e^-4	0.811	UPSTREAM CR44284 INTRON ltd	TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA
3L	7731911	3L_7731911_SNP [dm3] 3L_7738811_SNP [dm6]	A	G	3.154e^-4	0.811	INTRON CG32373 & 1 other
3R	11118061	3R_11118061_SNP [dm3] 3R_15292339_SNP [dm6]	G	A	3.154e^-4	0.811	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3R	26792571	3R_26792571_SNP [dm3] 3R_30966849_SNP [dm6]	C	A	3.154e^-4	0.811	INTERGENIC
3R	26795888	3R_26795888_SNP [dm3] 3R_30970166_SNP [dm6]	A	G	3.154e^-4	0.811	SYNONYMOUS_CODING 5-HT7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15379643	X_15379643_SNP [dm3] X_15485610_SNP [dm6]	G	A	3.155e^-4	0.811	SYNONYMOUS_CODING CG6340 UTR_3_PRIME CG6340	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16035282	2L_16035282_SNP [dm3] 2L_16035282_SNP [dm6]	A	T	3.166e^-4	0.811	INTRON beat-Ic
2R	13054618	2R_13054618_SNP [dm3] 2R_17167113_SNP [dm6]	A	G	3.173e^-4	0.811	UPSTREAM CG10953 INTERGENIC
2R	14555454	2R_14555454_SNP [dm3] 2R_18667949_SNP [dm6]	G	A	3.173e^-4	0.811	SYNONYMOUS_CODING edl
3L	9384868	3L_9384868_SNP [dm3] 3L_9391768_SNP [dm6]	G	C	3.173e^-4	0.811	INTRON CG4080	TF binding site BDTNP1_TFBS_dl
3R	13569346	3R_13569346_SNP [dm3] 3R_17743624_SNP [dm6]	G	A	3.173e^-4	0.811	INTRON TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3069491	X_3069491_SNP [dm3] X_3175458_SNP [dm6]	T	G	3.173e^-4	0.811	UTR_5_PRIME CG3939 UPSTREAM Fcp3C & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3L	4637268	3L_4637268_SNP [dm3] 3L_4637268_SNP [dm6]	T	C	3.176e^-4	0.811	UTR_3_PRIME axo INTRON axo
2R	17775223	2R_17775223_SNP [dm3] 2R_21887718_SNP [dm6]	T	C	3.181e^-4	0.811	INTRON Fili
2R	17775259	2R_17775259_SNP [dm3] 2R_21887754_SNP [dm6]	C	T	3.181e^-4	0.811	INTRON Fili
2R	17404817	2R_17404817_SNP [dm3] 2R_21517312_SNP [dm6]	T	C	3.182e^-4	0.811	NON_SYNONYMOUS_CODING CG10494 DOWNSTREAM MESK2
X	12718677	X_12718677_SNP [dm3] X_12824644_SNP [dm6]	G	C	3.193e^-4	0.811	INTRON Pde9
3L	4242612	3L_4242612_SNP [dm3] 3L_4242612_SNP [dm6]	G	C	3.197e^-4	0.811	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	4242625	3L_4242625_SNP [dm3] 3L_4242625_SNP [dm6]	T	C	3.197e^-4	0.811	UPSTREAM pav DOWNSTREAM CG14997 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	14318025	3L_14318025_SNP [dm3] 3L_14324925_SNP [dm6]	A	G	3.205e^-4	0.811	INTRON fz & 1 other
3L	6298685	3L_6298685_SNP [dm3] 3L_6305585_SNP [dm6]	T	A	3.207e^-4	0.811	UPSTREAM CR45113 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	12944236	X_12944236_SNP [dm3] X_13050203_SNP [dm6]	G	A	3.209e^-4	0.811	INTRON rad
X	15382140	X_15382140_SNP [dm3] X_15488107_SNP [dm6]	C	G	3.209e^-4	0.811	INTRON Gmap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16899892	3L_16899892_SNP [dm3] 3L_16906792_SNP [dm6]	T	C	3.217e^-4	0.811	INTRON Lmpt
3L	3923507	3L_3923507_SNP [dm3] 3L_3923507_SNP [dm6]	G	A	3.217e^-4	0.811	INTRON Eip63F-1
3R	15457440	3R_15457440_SNP [dm3] 3R_19631718_SNP [dm6]	A	G	3.217e^-4	0.811	INTRON CG6231
3R	19260638	3R_19260638_INS [dm3] 3R_23434916_INS [dm6]	C	CAGC	3.217e^-4	0.811	INTRON CG4374
3R	22268161	3R_22268161_SNP [dm3] 3R_26442439_SNP [dm6]	C	T	3.217e^-4	0.811	INTRON tx
3R	22412788	3R_22412788_SNP [dm3] 3R_26587066_SNP [dm6]	A	T	3.217e^-4	0.811	UTR_3_PRIME scrib INTRON scrib
3R	22412874	3R_22412874_SNP [dm3] 3R_26587152_SNP [dm6]	A	T	3.217e^-4	0.811	UTR_3_PRIME scrib INTRON scrib
3R	23265114	3R_23265114_SNP [dm3] 3R_27439392_SNP [dm6]	C	T	3.217e^-4	0.811	UPSTREAM CG43447 INTRON CG44290	TF binding site BDTNP1_TFBS_twi
2R	2441110	2R_2441110_SNP [dm3] 2R_6553605_SNP [dm6]	G	A	3.219e^-4	0.811	INTRON jing	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12745638	2L_12745638_SNP [dm3] 2L_12745638_SNP [dm6]	A	G	3.222e^-4	0.811	DOWNSTREAM MRP INTERGENIC	TF binding site mE1_TFBS_inv
X	12677099	X_12677099_SNP [dm3] X_12783066_SNP [dm6]	G	A	3.230e^-4	0.811	INTRON CG32647
2R	17775177	2R_17775177_SNP [dm3] 2R_21887672_SNP [dm6]	G	A	3.233e^-4	0.811	INTRON Fili
2R	17775202	2R_17775202_SNP [dm3] 2R_21887697_SNP [dm6]	G	A	3.233e^-4	0.811	INTRON Fili
X	3141313	X_3141313_SNP [dm3] X_3247280_SNP [dm6]	G	T	3.243e^-4	0.811	INTRON dnc
3R	4364876	3R_4364876_SNP [dm3] 3R_8539154_SNP [dm6]	A	G	3.245e^-4	0.811	INTERGENIC
2R	6650147	2R_6650147_SNP [dm3] 2R_10762642_SNP [dm6]	G	A	3.249e^-4	0.811	DOWNSTREAM CR43605 INTRON CG33144
2L	9275081	2L_9275081_SNP [dm3] 2L_9275081_SNP [dm6]	G	A	3.251e^-4	0.811	INTRON Ggamma30A	TF binding site BDTNP1_TFBS_dl
2L	7122046	2L_7122046_SNP [dm3] 2L_7122046_SNP [dm6]	C	A	3.252e^-4	0.811	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17905158	3R_17905158_SNP [dm3] 3R_22079436_SNP [dm6]	T	A	3.252e^-4	0.811	UPSTREAM CG13408 DOWNSTREAM how INTERGENIC
2L	8166521	2L_8166521_SNP [dm3] 2L_8166521_SNP [dm6]	A	T	3.255e^-4	0.811	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	6649782	2R_6649782_SNP [dm3] 2R_10762277_SNP [dm6]	A	G	3.259e^-4	0.811	DOWNSTREAM CR43605 INTRON CG33144
X	22196921	X_22196921_SNP [dm3] X_22795085_SNP [dm6]	G	T	3.264e^-4	0.811	INTRON CR44997	transposable element FlyBase
2L	8228398	2L_8228398_SNP [dm3] 2L_8228398_SNP [dm6]	C	T	3.266e^-4	0.811	INTRON Pvr
2L	8228401	2L_8228401_SNP [dm3] 2L_8228401_SNP [dm6]	A	T	3.266e^-4	0.811	INTRON Pvr
2R	16033977	2R_16033977_INS [dm3] 2R_20146472_INS [dm6]	GT	AAATAATTA	3.266e^-4	0.811	INTRON CG11041
X	12446759	X_12446759_SNP [dm3] X_12552726_SNP [dm6]	T	C	3.266e^-4	0.811	UPSTREAM Cpr11B INTRON CG43921
3L	15718777	3L_15718777_SNP [dm3] 3L_15725677_SNP [dm6]	G	A	3.267e^-4	0.811	INTRON comm
3L	9478303	3L_9478303_SNP [dm3] 3L_9485203_SNP [dm6]	C	A	3.274e^-4	0.811	SYNONYMOUS_CODING Jarid2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15248273	2L_15248273_DEL [dm3] 2L_15248273_DEL [dm6]	GCAG	G	3.275e^-4	0.811	UPSTREAM ZnT35C & 1 other INTERGENIC
3R	22292422	3R_22292422_SNP [dm3] 3R_26466700_SNP [dm6]	G	A	3.275e^-4	0.811	NON_SYNONYMOUS_CODING CG5455
2R	3965466	2R_3965466_SNP [dm3] 2R_8077961_SNP [dm6]	C	A	3.282e^-4	0.811	SYNONYMOUS_CODING lig UTR_3_PRIME lig DOWNSTREAM lig & 1 other
3R	22447129	3R_22447129_SNP [dm3] 3R_26621407_SNP [dm6]	A	G	3.284e^-4	0.811	UPSTREAM TwdlP INTERGENIC	TF binding site mE1_TFBS_chinmo
X	8949644	X_8949644_SNP [dm3] X_9055611_SNP [dm6]	A	C	3.284e^-4	0.811	SYNONYMOUS_CODING CG15365	TF binding site mE1_TFBS_chinmo
2R	1426683	2R_1426683_SNP [dm3] 2R_5539178_SNP [dm6]	T	C	3.286e^-4	0.811	INTRON CG30438
2R	6650016	2R_6650016_INS [dm3] 2R_10762511_INS [dm6]	A	ACCCC	3.288e^-4	0.811	DOWNSTREAM CR43605 INTRON CG33144
2L	8846456	2L_8846456_SNP [dm3] 2L_8846456_SNP [dm6]	G	A	3.292e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14168607	3L_14168607_SNP [dm3] 3L_14175507_SNP [dm6]	C	T	3.300e^-4	0.811	DOWNSTREAM D INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	6739887	2R_6739887_SNP [dm3] 2R_10852382_SNP [dm6]	G	A	3.302e^-4	0.811	INTRON CG30015
3L	602113	3L_602113_SNP [dm3] 3L_602113_SNP [dm6]	G	C	3.309e^-4	0.811	INTRON CG13893
3L	6680824	3L_6680824_SNP [dm3] 3L_6687724_SNP [dm6]	A	G	3.313e^-4	0.811	INTERGENIC
2R	5074458	2R_5074458_SNP [dm3] 2R_9186953_SNP [dm6]	A	C	3.316e^-4	0.811	UTR_3_PRIME CG8026 & 1 other UPSTREAM ltd DOWNSTREAM CG8026
2L	16424149	2L_16424149_SNP [dm3] 2L_16424149_SNP [dm6]	C	T	3.316e^-4	0.811	INTRON CG5888	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	8119393	2L_8119393_SNP [dm3] 2L_8119393_SNP [dm6]	A	G	3.316e^-4	0.811	SYNONYMOUS_CODING mon2
2L	13443268	2L_13443268_SNP [dm3] 2L_13443268_SNP [dm6]	G	C	3.320e^-4	0.811	UPSTREAM CR45683 DOWNSTREAM CG9267 INTRON CG42784	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14515451	2L_14515451_SNP [dm3] 2L_14515451_SNP [dm6]	C	T	3.320e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15252081	2L_15252081_SNP [dm3] 2L_15252081_SNP [dm6]	C	T	3.320e^-4	0.811	SYNONYMOUS_CODING dao	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5386605	2L_5386605_SNP [dm3] 2L_5386605_SNP [dm6]	C	T	3.320e^-4	0.811	UPSTREAM CR44745 INTERGENIC
2L	7756210	2L_7756210_SNP [dm3] 2L_7756210_SNP [dm6]	G	A	3.320e^-4	0.811	UPSTREAM CG14538 INTRON CG7196	TF binding site mE1_TFBS_chinmo
3L	6456055	3L_6456055_SNP [dm3] 3L_6462955_SNP [dm6]	A	C	3.320e^-4	0.811	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
3L	6456106	3L_6456106_SNP [dm3] 3L_6463006_SNP [dm6]	G	A	3.320e^-4	0.811	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
3L	9681253	3L_9681253_SNP [dm3] 3L_9688153_SNP [dm6]	T	C	3.320e^-4	0.811	INTRON CG6767	TF binding site BDTNP1_TFBS_dl
3L	13031225	3L_13031225_SNP [dm3] 3L_13038125_SNP [dm6]	G	A	3.336e^-4	0.811	SYNONYMOUS_CODING SRm160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	26935512	3R_26935512_SNP [dm3] 3R_31109790_SNP [dm6]	A	T	3.338e^-4	0.811	UPSTREAM CG11318 INTERGENIC
3L	9068990	3L_9068990_SNP [dm3] 3L_9075890_SNP [dm6]	C	T	3.346e^-4	0.811	INTRON Tequila	TF binding site mE1_TFBS_cad
3L	16981524	3L_16981524_SNP [dm3] 3L_16988424_SNP [dm6]	G	T	3.350e^-4	0.811	INTRON Exn
X	17026100	X_17026100_SNP [dm3] X_17132067_SNP [dm6]	C	G	3.354e^-4	0.811	INTRON CG5004
2L	15376525	2L_15376525_SNP [dm3] 2L_15376525_SNP [dm6]	C	T	3.366e^-4	0.811	INTERGENIC
2R	6652840	2R_6652840_SNP [dm3] 2R_10765335_SNP [dm6]	G	A	3.375e^-4	0.811	INTRON CG33144
3R	21235512	3R_21235512_SNP [dm3] 3R_25409790_SNP [dm6]	G	C	3.377e^-4	0.811	INTRON Fur1
2L	11485934	2L_11485934_SNP [dm3] 2L_11485934_SNP [dm6]	C	T	3.377e^-4	0.811	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11485937	2L_11485937_SNP [dm3] 2L_11485937_SNP [dm6]	T	C	3.377e^-4	0.811	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5795438	2L_5795438_SNP [dm3] 2L_5795438_SNP [dm6]	G	A	3.379e^-4	0.811	INTRON CG9171
3R	17830630	3R_17830630_SNP [dm3] 3R_22004908_SNP [dm6]	G	A	3.395e^-4	0.811	SYNONYMOUS_CODING Eip93F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5664449	3L_5664449_SNP [dm3] 3L_5671349_SNP [dm6]	A	C	3.397e^-4	0.811	INTRON sif
3L	12046169	3L_12046169_SNP [dm3] 3L_12053069_SNP [dm6]	G	A	3.400e^-4	0.811	INTRON rols
3L	12046173	3L_12046173_SNP [dm3] 3L_12053073_SNP [dm6]	C	G	3.400e^-4	0.811	INTRON rols
3L	12046180	3L_12046180_SNP [dm3] 3L_12053080_SNP [dm6]	A	C	3.400e^-4	0.811	INTRON rols
2L	5265427	2L_5265427_SNP [dm3] 2L_5265427_SNP [dm6]	C	A	3.402e^-4	0.811	SYNONYMOUS_CODING Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12578521	3L_12578521_SNP [dm3] 3L_12585421_SNP [dm6]	G	A	3.402e^-4	0.811	INTRON ara
3R	12113927	3R_12113927_SNP [dm3] 3R_16288205_SNP [dm6]	C	A	3.402e^-4	0.811	INTRON gish	TF binding site mE1_TFBS_inv
X	18965248	X_18965248_SNP [dm3] X_19071215_SNP [dm6]	G	C	3.402e^-4	0.811	INTERGENIC
3L	4642265	3L_4642265_SNP [dm3] 3L_4642265_SNP [dm6]	T	G	3.408e^-4	0.811	UTR_3_PRIME axo INTRON axo
3L	4081316	3L_4081316_SNP [dm3] 3L_4081316_SNP [dm6]	G	A	3.413e^-4	0.811	INTRON Gad1
3R	4135967	3R_4135967_SNP [dm3] 3R_8310245_SNP [dm6]	A	T	3.421e^-4	0.811	UTR_5_PRIME CG11693 DOWNSTREAM CG11694 INTRON CG11693	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	15248188	2L_15248188_SNP [dm3] 2L_15248188_SNP [dm6]	A	T	3.428e^-4	0.811	UPSTREAM ZnT35C & 1 other INTERGENIC
3L	15609652	3L_15609652_SNP [dm3] 3L_15616552_SNP [dm6]	T	G	3.441e^-4	0.811	INTRON comm3
3L	10592051	3L_10592051_SNP [dm3] 3L_10598951_SNP [dm6]	T	A	3.445e^-4	0.811	INTERGENIC
3L	2554560	3L_2554560_SNP [dm3] 3L_2554560_SNP [dm6]	A	G	3.448e^-4	0.811	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Ubx
3R	25834585	3R_25834585_SNP [dm3] 3R_30008863_SNP [dm6]	T	A	3.452e^-4	0.811	INTRON Nlp & 1 other	TF binding site mE1_TFBS_sens
3L	10005870	3L_10005870_SNP [dm3] 3L_10012770_SNP [dm6]	T	A	3.455e^-4	0.811	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10006007	3L_10006007_SNP [dm3] 3L_10012907_SNP [dm6]	G	C	3.455e^-4	0.811	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22189759	X_22189759_SNP [dm3] X_22787923_SNP [dm6]	G	A	3.476e^-4	0.811	INTRON CR44997
3R	26799917	3R_26799917_SNP [dm3] 3R_30974195_SNP [dm6]	G	A	3.478e^-4	0.811	INTRON 5-HT7
2L	10296043	2L_10296043_SNP [dm3] 2L_10296043_SNP [dm6]	T	C	3.480e^-4	0.811	SYNONYMOUS_CODING CYLD UPSTREAM Hand	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
3L	14154584	3L_14154584_SNP [dm3] 3L_14161484_SNP [dm6]	T	G	3.485e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs
3L	14154588	3L_14154588_SNP [dm3] 3L_14161488_SNP [dm6]	A	T	3.485e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs
X	3444096	X_3444096_SNP [dm3] X_3550063_SNP [dm6]	A	G	3.486e^-4	0.811	INTRON CG32791
3L	1265792	3L_1265792_SNP [dm3] 3L_1265792_SNP [dm6]	C	T	3.486e^-4	0.811	UTR_5_PRIME CG9134 INTRON CG9134	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5478576	2L_5478576_SNP [dm3] 2L_5478576_SNP [dm6]	T	C	3.489e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_cad
2L	7121005	2L_7121005_SNP [dm3] 2L_7121005_SNP [dm6]	C	G	3.494e^-4	0.811	INTRON Pvf3	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
X	17163261	X_17163261_SNP [dm3] X_17269228_SNP [dm6]	G	T	3.497e^-4	0.811	INTRON f
X	14557987	X_14557987_SNP [dm3] X_14663954_SNP [dm6]	G	A	3.507e^-4	0.811	INTERGENIC
3R	22443127	3R_22443127_SNP [dm3] 3R_26617405_SNP [dm6]	C	T	3.528e^-4	0.811	INTERGENIC
3R	22456430	3R_22456430_SNP [dm3] 3R_26630708_SNP [dm6]	C	T	3.528e^-4	0.811	SYNONYMOUS_CODING TwdlJ	TF binding site mE1_TFBS_chinmo
2L	1387199	2L_1387199_SNP [dm3] 2L_1387199_SNP [dm6]	G	T	3.544e^-4	0.811	SYNONYMOUS_CODING lea
X	17676978	X_17676978_SNP [dm3] X_17782945_SNP [dm6]	T	C	3.548e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17676981	X_17676981_SNP [dm3] X_17782948_SNP [dm6]	C	T	3.548e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19387895	2R_19387895_SNP [dm3] 2R_23500372_SNP [dm6]	C	T	3.558e^-4	0.811	UTR_3_PRIME CG13558	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	17097539	3L_17097539_SNP [dm3] 3L_17104439_SNP [dm6]	C	A	3.563e^-4	0.811	INTRON Rbp6
3R	12575128	3R_12575128_SNP [dm3] 3R_16749406_SNP [dm6]	C	G	3.572e^-4	0.811	INTRON bxd	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2R	4157526	2R_4157526_SNP [dm3] 2R_8270021_SNP [dm6]	T	C	3.574e^-4	0.811	UPSTREAM CG30371 INTERGENIC
3R	24197153	3R_24197153_SNP [dm3] 3R_28371431_SNP [dm6]	A	C	3.574e^-4	0.811	INTERGENIC
3R	24197161	3R_24197161_SNP [dm3] 3R_28371439_SNP [dm6]	T	C	3.574e^-4	0.811	INTERGENIC
2R	6654876	2R_6654876_SNP [dm3] 2R_10767371_SNP [dm6]	G	T	3.580e^-4	0.811	INTRON CG33144
2R	6654878	2R_6654878_SNP [dm3] 2R_10767373_SNP [dm6]	A	C	3.580e^-4	0.811	INTRON CG33144
2R	6654879	2R_6654879_SNP [dm3] 2R_10767374_SNP [dm6]	A	T	3.580e^-4	0.811	INTRON CG33144
2L	19796908	2L_19796908_SNP [dm3] 2L_19796908_SNP [dm6]	A	G	3.581e^-4	0.811	INTRON sick	TF binding site BDTNP1_TFBS_dl
2L	11486010	2L_11486010_SNP [dm3] 2L_11486010_SNP [dm6]	A	G	3.584e^-4	0.811	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14240523	2R_14240523_SNP [dm3] 2R_18353018_SNP [dm6]	G	A	3.589e^-4	0.811	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2344888	3R_2344888_DEL [dm3] 3R_6519166_DEL [dm6]	CAATAAACAATCAAATAAAA...	C	3.592e^-4	0.811	INTERGENIC
3R	2378274	3R_2378274_SNP [dm3] 3R_6552552_SNP [dm6]	G	A	3.592e^-4	0.811	INTRON dpr11
2L	7264147	2L_7264147_SNP [dm3] 2L_7264147_SNP [dm6]	C	G	3.595e^-4	0.811	INTRON Wnt4	TF binding site mE1_TFBS_HSA
2L	5378104	2L_5378104_SNP [dm3] 2L_5378104_SNP [dm6]	G	A	3.608e^-4	0.811	DOWNSTREAM CR42850 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	21826791	2L_21826791_SNP [dm3] 2L_21826791_SNP [dm6]	C	A	3.619e^-4	0.811	INTERGENIC	transposable element FlyBase
3L	12135244	3L_12135244_SNP [dm3] 3L_12142144_SNP [dm6]	A	G	3.625e^-4	0.811	SYNONYMOUS_CODING RhoGAP68F
3L	11189451	3L_11189451_SNP [dm3] 3L_11196351_SNP [dm6]	G	A	3.625e^-4	0.811	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20826986	X_20826986_SNP [dm3] X_20955959_SNP [dm6]	A	T	3.630e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_inv
2R	3963824	2R_3963824_SNP [dm3] 2R_8076319_SNP [dm6]	G	A	3.639e^-4	0.811	SYNONYMOUS_CODING lig UTR_3_PRIME lig	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13002549	2R_13002549_SNP [dm3] 2R_17115044_SNP [dm6]	T	G	3.648e^-4	0.811	DOWNSTREAM CG15611 INTERGENIC
2R	13002552	2R_13002552_SNP [dm3] 2R_17115047_SNP [dm6]	G	A	3.648e^-4	0.811	DOWNSTREAM CG15611 INTERGENIC
2R	6655860	2R_6655860_SNP [dm3] 2R_10768355_SNP [dm6]	C	T	3.650e^-4	0.811	INTRON CG33144
X	20533621	X_20533621_SNP [dm3] X_20662594_SNP [dm6]	A	T	3.659e^-4	0.811	INTRON CG1835	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	20534864	X_20534864_SNP [dm3] X_20663837_SNP [dm6]	G	A	3.659e^-4	0.811	INTRON CG1835	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	10774662	2R_10774662_SNP [dm3] 2R_14887157_SNP [dm6]	G	A	3.662e^-4	0.811	UPSTREAM Cyp6a21 DOWNSTREAM Cyp6a8 INTERGENIC
3R	15168032	3R_15168032_SNP [dm3] 3R_19342310_SNP [dm6]	C	G	3.663e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7217579	3R_7217579_SNP [dm3] 3R_11391857_SNP [dm6]	C	A	3.663e^-4	0.811	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12944179	X_12944179_SNP [dm3] X_13050146_SNP [dm6]	A	T	3.666e^-4	0.811	INTRON rad
X	12944184	X_12944184_SNP [dm3] X_13050151_SNP [dm6]	A	C	3.666e^-4	0.811	INTRON rad
3R	26802313	3R_26802313_SNP [dm3] 3R_30976591_SNP [dm6]	G	T	3.674e^-4	0.811	INTRON 5-HT7
2R	6650011	2R_6650011_SNP [dm3] 2R_10762506_SNP [dm6]	C	G	3.679e^-4	0.811	DOWNSTREAM CR43605 INTRON CG33144
X	18964544	X_18964544_SNP [dm3] X_19070511_SNP [dm6]	A	G	3.680e^-4	0.811	INTERGENIC
3L	3053836	3L_3053836_SNP [dm3] 3L_3053836_SNP [dm6]	G	T	3.681e^-4	0.811	NON_SYNONYMOUS_CODING CG1271	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26670412	3R_26670412_SNP [dm3] 3R_30844690_SNP [dm6]	C	T	3.697e^-4	0.814	INTERGENIC
3L	19571961	3L_19571961_SNP [dm3] 3L_19578861_SNP [dm6]	G	T	3.715e^-4	0.816	INTRON Shal
3R	26670369	3R_26670369_DEL [dm3] 3R_30844647_DEL [dm6]	TGTACT	T	3.732e^-4	0.816	INTERGENIC
2R	9417945	2R_9417945_SNP [dm3] 2R_13530440_SNP [dm6]	C	G	3.735e^-4	0.816	UPSTREAM Vmat INTRON Vmat
2R	9417971	2R_9417971_SNP [dm3] 2R_13530466_SNP [dm6]	A	T	3.735e^-4	0.816	UPSTREAM Vmat INTRON Vmat
3L	2554573	3L_2554573_SNP [dm3] 3L_2554573_SNP [dm6]	A	T	3.737e^-4	0.816	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Ubx
X	14787705	X_14787705_SNP [dm3] X_14893672_SNP [dm6]	A	C	3.737e^-4	0.816	INTRON Flo2 & 1 other
3L	14589992	3L_14589992_SNP [dm3] 3L_14596892_SNP [dm6]	T	C	3.739e^-4	0.816	INTRON HGTX
2R	4905758	2R_4905758_SNP [dm3] 2R_9018253_SNP [dm6]	A	C	3.742e^-4	0.816	DOWNSTREAM CG8170 INTRON CG13747
X	1534138	X_1534138_SNP [dm3] X_1640105_SNP [dm6]	T	A	3.755e^-4	0.816	INTRON Mur2B & 1 other	TF binding site mE1_TFBS_HSA
3L	22823898	3L_22823898_SNP [dm3] 3L_22830798_SNP [dm6]	T	A	3.757e^-4	0.816	INTRON jim	TF binding site BDTNP1_TFBS_dl
X	3444103	X_3444103_SNP [dm3] X_3550070_SNP [dm6]	A	T	3.758e^-4	0.816	INTRON CG32791
3L	5340685	3L_5340685_SNP [dm3] 3L_5347585_SNP [dm6]	G	A	3.775e^-4	0.816	INTRON lama
X	22190301	X_22190301_SNP [dm3] X_22788465_SNP [dm6]	C	T	3.781e^-4	0.816	INTRON CR44997
X	22197923	X_22197923_SNP [dm3] X_22796087_SNP [dm6]	T	C	3.781e^-4	0.816	INTRON CR44997
X	22198350	X_22198350_SNP [dm3] X_22796514_SNP [dm6]	G	A	3.781e^-4	0.816	INTRON CR44997
X	9799779	X_9799779_SNP [dm3] X_9905746_SNP [dm6]	G	C	3.784e^-4	0.816	INTERGENIC
2L	9989166	2L_9989166_SNP [dm3] 2L_9989166_SNP [dm6]	A	G	3.797e^-4	0.816	INTRON bib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20228269	X_20228269_SNP [dm3] X_20357242_SNP [dm6]	T	C	3.798e^-4	0.816	INTERGENIC
3L	11195296	3L_11195296_SNP [dm3] 3L_11202196_SNP [dm6]	G	A	3.807e^-4	0.816	DOWNSTREAM CG14141 INTRON Plod
3L	1483614	3L_1483614_SNP [dm3] 3L_1483614_SNP [dm6]	C	A	3.807e^-4	0.816	INTRON stet	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17409639	2R_17409639_SNP [dm3] 2R_21522134_SNP [dm6]	T	C	3.815e^-4	0.816	UPSTREAM Egfr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	22444133	3R_22444133_SNP [dm3] 3R_26618411_SNP [dm6]	A	G	3.816e^-4	0.816	UPSTREAM TwdlM INTERGENIC
2L	3105626	2L_3105626_SNP [dm3] 2L_3105626_SNP [dm6]	G	A	3.819e^-4	0.816	INTRON toc
2L	6752117	2L_6752117_SNP [dm3] 2L_6752117_SNP [dm6]	T	C	3.822e^-4	0.816	INTRON CG11221
3L	17023728	3L_17023728_SNP [dm3] 3L_17030628_SNP [dm6]	T	A	3.837e^-4	0.816	DOWNSTREAM CG7730 INTRON Ilp8
3L	17023748	3L_17023748_SNP [dm3] 3L_17030648_SNP [dm6]	C	A	3.837e^-4	0.816	DOWNSTREAM CG7730 INTRON Ilp8
3L	433708	3L_433708_SNP [dm3] 3L_433708_SNP [dm6]	A	G	3.857e^-4	0.816	UTR_5_PRIME CG13891 DOWNSTREAM klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18626796	3L_18626796_SNP [dm3] 3L_18633696_SNP [dm6]	A	C	3.900e^-4	0.816	INTRON MYPT-75D
3L	18626816	3L_18626816_SNP [dm3] 3L_18633716_SNP [dm6]	A	G	3.900e^-4	0.816	INTRON MYPT-75D
2R	9917952	2R_9917952_SNP [dm3] 2R_14030447_SNP [dm6]	C	A	3.905e^-4	0.816	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16425477	X_16425477_SNP [dm3] X_16531444_SNP [dm6]	G	A	3.909e^-4	0.816	INTRON para	TF binding site BDTNP1_TFBS_dl
3R	22596628	3R_22596628_SNP [dm3] 3R_26770906_SNP [dm6]	G	T	3.910e^-4	0.816	INTERGENIC
2L	16955315	2L_16955315_SNP [dm3] 2L_16955315_SNP [dm6]	A	G	3.920e^-4	0.816	INTERGENIC
2L	13057637	2L_13057637_SNP [dm3] 2L_13057637_SNP [dm6]	C	T	3.930e^-4	0.816	INTRON CG9932
2R	6646351	2R_6646351_DEL [dm3] 2R_10758846_DEL [dm6]	CCTAGCCACTCCCCCTGCCG...	C	3.934e^-4	0.816	INTRON CG33144
3R	15194178	3R_15194178_SNP [dm3] 3R_19368456_SNP [dm6]	A	T	3.942e^-4	0.816	DOWNSTREAM Ino80 INTERGENIC
3R	15194268	3R_15194268_SNP [dm3] 3R_19368546_SNP [dm6]	A	G	3.942e^-4	0.816	DOWNSTREAM Ino80 INTERGENIC
2L	8931402	2L_8931402_SNP [dm3] 2L_8931402_SNP [dm6]	G	A	3.961e^-4	0.816	NON_SYNONYMOUS_CODING CG34398 INTRON CG34398
X	15623269	X_15623269_SNP [dm3] X_15729236_SNP [dm6]	T	A	3.989e^-4	0.816	SYNONYMOUS_CODING CG8184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21897673	X_21897673_SNP [dm3] X_22495837_SNP [dm6]	A	G	3.993e^-4	0.816	SYNONYMOUS_CODING l_1_G0196
3L	5346613	3L_5346613_SNP [dm3] 3L_5353513_SNP [dm6]	T	C	3.998e^-4	0.816	INTRON lama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24310471	3R_24310471_SNP [dm3] 3R_28484749_SNP [dm6]	T	C	3.998e^-4	0.816	NON_SYNONYMOUS_CODING CG1894
2L	8232541	2L_8232541_SNP [dm3] 2L_8232541_SNP [dm6]	G	A	4.003e^-4	0.816	INTRON Pvr
2L	8232575	2L_8232575_SNP [dm3] 2L_8232575_SNP [dm6]	C	T	4.003e^-4	0.816	INTRON Pvr
2L	8233415	2L_8233415_DEL [dm3] 2L_8233415_DEL [dm6]	TCGT	T	4.003e^-4	0.816	INTRON Pvr	TF binding site mE1_TFBS_hkb
2L	8233424	2L_8233424_SNP [dm3] 2L_8233424_SNP [dm6]	T	C	4.003e^-4	0.816	INTRON Pvr	TF binding site mE1_TFBS_hkb
2L	8234485	2L_8234485_SNP [dm3] 2L_8234485_SNP [dm6]	G	C	4.003e^-4	0.816	INTRON Pvr
2L	8234714	2L_8234714_DEL [dm3] 2L_8234714_DEL [dm6]	TACGTG	T	4.003e^-4	0.816	INTRON Pvr
2L	8234812	2L_8234812_SNP [dm3] 2L_8234812_SNP [dm6]	A	T	4.003e^-4	0.816	INTRON Pvr
2L	8234848	2L_8234848_SNP [dm3] 2L_8234848_SNP [dm6]	C	T	4.003e^-4	0.816	INTRON Pvr
2L	8234858	2L_8234858_SNP [dm3] 2L_8234858_SNP [dm6]	A	T	4.003e^-4	0.816	INTRON Pvr
2L	8234896	2L_8234896_SNP [dm3] 2L_8234896_SNP [dm6]	T	G	4.003e^-4	0.816	INTRON Pvr
2R	15737756	2R_15737756_SNP [dm3] 2R_19850251_SNP [dm6]	T	A	4.003e^-4	0.816	INTERGENIC
2R	15737762	2R_15737762_SNP [dm3] 2R_19850257_SNP [dm6]	T	C	4.003e^-4	0.816	INTERGENIC
3L	1436415	3L_1436415_SNP [dm3] 3L_1436415_SNP [dm6]	T	A	4.003e^-4	0.816	SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6426879	3L_6426879_SNP [dm3] 3L_6433779_SNP [dm6]	C	T	4.003e^-4	0.816	INTRON CG42747
3R	17876834	3R_17876834_SNP [dm3] 3R_22051112_SNP [dm6]	G	A	4.003e^-4	0.816	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	19509234	3R_19509234_SNP [dm3] 3R_23683512_SNP [dm6]	G	C	4.003e^-4	0.816	SYNONYMOUS_CODING CG16710 UPSTREAM CG18754
3R	21758250	3R_21758250_SNP [dm3] 3R_25932528_SNP [dm6]	A	G	4.003e^-4	0.816	DOWNSTREAM CR34024 INTRON CCAP-R
3R	22417639	3R_22417639_SNP [dm3] 3R_26591917_SNP [dm6]	A	G	4.003e^-4	0.816	INTRON scrib
3R	22462315	3R_22462315_SNP [dm3] 3R_26636593_SNP [dm6]	C	G	4.005e^-4	0.816	UPSTREAM TwdlS DOWNSTREAM TwdlR INTERGENIC
2R	16369807	2R_16369807_DEL [dm3] 2R_20482302_DEL [dm6]	CGAAATA	C	4.032e^-4	0.816	INTERGENIC
3R	9548071	3R_9548071_SNP [dm3] 3R_13722349_SNP [dm6]	C	T	4.035e^-4	0.816	INTRON CG34383
X	3171100	X_3171100_SNP [dm3] X_3277067_SNP [dm6]	T	G	4.043e^-4	0.816	INTRON dnc
X	22198952	X_22198952_SNP [dm3] X_22797116_SNP [dm6]	G	A	4.052e^-4	0.816	INTRON CR44997
3L	13245911	3L_13245911_SNP [dm3] 3L_13252811_SNP [dm6]	A	T	4.057e^-4	0.816	INTRON caps
X	16427613	X_16427613_SNP [dm3] X_16533580_SNP [dm6]	A	G	4.057e^-4	0.816	UPSTREAM para INTERGENIC
2R	2490650	2R_2490650_SNP [dm3] 2R_6603145_SNP [dm6]	C	T	4.059e^-4	0.816	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	19388304	2R_19388304_SNP [dm3] 2R_23500781_SNP [dm6]	C	A	4.066e^-4	0.816	DOWNSTREAM CG13558 INTERGENIC
2R	1264212	2R_1264212_DEL [dm3] 2R_5376707_DEL [dm6]	GG	G	4.069e^-4	0.816	INTERGENIC	transposable element FlyBase
2R	15911894	2R_15911894_SNP [dm3] 2R_20024389_SNP [dm6]	T	A	4.075e^-4	0.816	INTERGENIC
2R	15911935	2R_15911935_SNP [dm3] 2R_20024430_SNP [dm6]	C	T	4.075e^-4	0.816	INTERGENIC
2R	15911950	2R_15911950_SNP [dm3] 2R_20024445_SNP [dm6]	A	T	4.075e^-4	0.816	INTERGENIC
2L	14535294	2L_14535294_SNP [dm3] 2L_14535294_SNP [dm6]	C	G	4.081e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	21757628	2L_21757628_SNP [dm3] 2L_21757628_SNP [dm6]	A	C	4.082e^-4	0.816	UPSTREAM CG1416 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	21758397	2L_21758397_SNP [dm3] 2L_21758397_SNP [dm6]	A	G	4.082e^-4	0.816	UPSTREAM step INTRON CG1416	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3915715	2R_3915715_SNP [dm3] 2R_8028210_SNP [dm6]	T	C	4.082e^-4	0.816	DOWNSTREAM CR43724 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12406363	3L_12406363_SNP [dm3] 3L_12413263_SNP [dm6]	T	A	4.083e^-4	0.816	INTRON CG32103
3L	12406380	3L_12406380_SNP [dm3] 3L_12413280_SNP [dm6]	G	A	4.083e^-4	0.816	INTRON CG32103
2R	17657491	2R_17657491_SNP [dm3] 2R_21769986_SNP [dm6]	T	C	4.084e^-4	0.816	SYNONYMOUS_CODING CG30395	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4759671	3L_4759671_SNP [dm3] 3L_4759671_SNP [dm6]	C	A	4.099e^-4	0.816	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4759708	3L_4759708_SNP [dm3] 3L_4759708_SNP [dm6]	G	A	4.099e^-4	0.816	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4759743	3L_4759743_SNP [dm3] 3L_4759743_SNP [dm6]	C	T	4.099e^-4	0.816	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15441819	2R_15441819_INS [dm3] 2R_19554314_INS [dm6]	T	TATGT	4.106e^-4	0.816	INTRON sm
3L	602394	3L_602394_SNP [dm3] 3L_602394_SNP [dm6]	C	A	4.140e^-4	0.816	INTRON CG13893
3L	10972906	3L_10972906_SNP [dm3] 3L_10979806_SNP [dm6]	T	A	4.143e^-4	0.816	INTERGENIC
2R	19140044	2R_19140044_INS [dm3] 2R_23252521_INS [dm6]	A	AC	4.145e^-4	0.816	INTERGENIC
2L	4335705	2L_4335705_SNP [dm3] 2L_4335705_SNP [dm6]	T	A	4.150e^-4	0.816	INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	14002440	3L_14002440_SNP [dm3] 3L_14009340_SNP [dm6]	T	C	4.154e^-4	0.816	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	10902848	2R_10902848_SNP [dm3] 2R_15015343_SNP [dm6]	T	C	4.155e^-4	0.816	INTRON hbs	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr
2R	17759318	2R_17759318_SNP [dm3] 2R_21871813_SNP [dm6]	C	T	4.155e^-4	0.816	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	2554303	3R_2554303_INS [dm3] 3R_6728581_INS [dm6]	C	CC	4.168e^-4	0.816	INTRON pb	regulatory region FlyBase REDfly_CRMs
3R	15970343	3R_15970343_SNP [dm3] 3R_20144621_SNP [dm6]	G	A	4.185e^-4	0.816	INTERGENIC
3R	15971184	3R_15971184_SNP [dm3] 3R_20145462_SNP [dm6]	A	G	4.185e^-4	0.816	INTERGENIC
2L	5650345	2L_5650345_SNP [dm3] 2L_5650345_SNP [dm6]	T	C	4.186e^-4	0.816	INTRON CG31646
2L	5650350	2L_5650350_SNP [dm3] 2L_5650350_SNP [dm6]	T	C	4.186e^-4	0.816	INTRON CG31646
2R	15862901	2R_15862901_SNP [dm3] 2R_19975396_SNP [dm6]	C	T	4.190e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1254879	3L_1254879_SNP [dm3] 3L_1254879_SNP [dm6]	C	T	4.195e^-4	0.816	SYNONYMOUS_CODING CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	8234693	2L_8234693_SNP [dm3] 2L_8234693_SNP [dm6]	A	C	4.196e^-4	0.816	INTRON Pvr
3L	1124266	3L_1124266_SNP [dm3] 3L_1124266_SNP [dm6]	A	C	4.212e^-4	0.816	INTERGENIC	regulatory region REDfly_CRMs
X	22246314	X_22246314_SNP [dm3] X_22844478_SNP [dm6]	T	A	4.212e^-4	0.816	INTRON fog & 1 other
2R	17909874	2R_17909874_SNP [dm3] 2R_22022369_SNP [dm6]	A	G	4.218e^-4	0.816	INTRON CG34370
2L	4153421	2L_4153421_SNP [dm3] 2L_4153421_SNP [dm6]	C	A	4.221e^-4	0.816	INTERGENIC
2R	6657355	2R_6657355_SNP [dm3] 2R_10769850_SNP [dm6]	A	G	4.225e^-4	0.816	INTRON CG33144
2L	21756039	2L_21756039_SNP [dm3] 2L_21756039_SNP [dm6]	C	A	4.227e^-4	0.816	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17324250	X_17324250_SNP [dm3] X_17430217_SNP [dm6]	T	C	4.228e^-4	0.816	INTRON CG12994
X	11674136	X_11674136_SNP [dm3] X_11780103_SNP [dm6]	C	A	4.228e^-4	0.816	INTERGENIC
2R	16168228	2R_16168228_SNP [dm3] 2R_20280723_SNP [dm6]	A	T	4.243e^-4	0.816	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
2R	16168304	2R_16168304_SNP [dm3] 2R_20280799_SNP [dm6]	T	C	4.243e^-4	0.816	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
2L	8156449	2L_8156449_SNP [dm3] 2L_8156449_SNP [dm6]	T	C	4.247e^-4	0.816	UPSTREAM CG8552 DOWNSTREAM CG43394 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
X	3171080	X_3171080_SNP [dm3] X_3277047_SNP [dm6]	T	C	4.275e^-4	0.816	INTRON dnc
X	3171097	X_3171097_INS [dm3] X_3277064_INS [dm6]	T	TGTAAA	4.275e^-4	0.816	INTRON dnc
X	3171105	X_3171105_SNP [dm3] X_3277072_SNP [dm6]	C	A	4.275e^-4	0.816	INTRON dnc
X	3171106	X_3171106_SNP [dm3] X_3277073_SNP [dm6]	T	A	4.275e^-4	0.816	INTRON dnc
X	3171108	X_3171108_INS [dm3] X_3277075_INS [dm6]	TC	ATAAAAT	4.275e^-4	0.816	INTRON dnc
X	3171132	X_3171132_SNP [dm3] X_3277099_SNP [dm6]	A	T	4.275e^-4	0.816	INTRON dnc
3L	593052	3L_593052_SNP [dm3] 3L_593052_SNP [dm6]	T	C	4.287e^-4	0.816	UPSTREAM MED14 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	15970093	3R_15970093_SNP [dm3] 3R_20144371_SNP [dm6]	A	G	4.288e^-4	0.816	INTERGENIC
3R	15970143	3R_15970143_SNP [dm3] 3R_20144421_SNP [dm6]	G	A	4.288e^-4	0.816	INTERGENIC
3R	15971158	3R_15971158_SNP [dm3] 3R_20145436_SNP [dm6]	A	T	4.288e^-4	0.816	INTERGENIC
3R	15971164	3R_15971164_SNP [dm3] 3R_20145442_SNP [dm6]	A	G	4.288e^-4	0.816	INTERGENIC
3R	22874077	3R_22874077_INS [dm3] 3R_27048355_INS [dm6]	A	ATA	4.288e^-4	0.816	UPSTREAM TwdlT INTRON RYa-R
3R	22874084	3R_22874084_SNP [dm3] 3R_27048362_SNP [dm6]	C	T	4.288e^-4	0.816	UPSTREAM TwdlT INTRON RYa-R
2R	11440304	2R_11440304_SNP [dm3] 2R_15552799_SNP [dm6]	A	G	4.301e^-4	0.816	INTERGENIC
2L	8234062	2L_8234062_SNP [dm3] 2L_8234062_SNP [dm6]	C	A	4.304e^-4	0.816	INTRON Pvr
3L	3517725	3L_3517725_SNP [dm3] 3L_3517725_SNP [dm6]	G	A	4.311e^-4	0.816	INTRON Eip63E	TF binding site BDTNP1_TFBS_twi
2R	11878071	2R_11878071_SNP [dm3] 2R_15990566_SNP [dm6]	T	C	4.315e^-4	0.816	SYNONYMOUS_CODING CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11878083	2R_11878083_SNP [dm3] 2R_15990578_SNP [dm6]	A	G	4.315e^-4	0.816	SYNONYMOUS_CODING CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19458354	2L_19458354_SNP [dm3] 2L_19458354_SNP [dm6]	T	C	4.317e^-4	0.816	DOWNSTREAM CG10026 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	19458361	2L_19458361_SNP [dm3] 2L_19458361_SNP [dm6]	G	T	4.317e^-4	0.816	DOWNSTREAM CG10026 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	19458372	2L_19458372_SNP [dm3] 2L_19458372_SNP [dm6]	A	T	4.317e^-4	0.816	DOWNSTREAM CG10026 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	15975030	3R_15975030_SNP [dm3] 3R_20149308_SNP [dm6]	G	A	4.324e^-4	0.816	INTERGENIC
2L	7780403	2L_7780403_SNP [dm3] 2L_7780403_SNP [dm6]	C	T	4.331e^-4	0.816	SYNONYMOUS_CODING Uro
2L	8234304	2L_8234304_SNP [dm3] 2L_8234304_SNP [dm6]	A	C	4.331e^-4	0.816	INTRON Pvr
2R	10726833	2R_10726833_SNP [dm3] 2R_14839328_SNP [dm6]	G	A	4.339e^-4	0.816	INTERGENIC
2R	4905741	2R_4905741_SNP [dm3] 2R_9018236_SNP [dm6]	C	T	4.342e^-4	0.816	DOWNSTREAM CG8170 INTRON CG13747
2L	21840147	2L_21840147_SNP [dm3] 2L_21840147_SNP [dm6]	G	A	4.343e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_sens
2L	21840156	2L_21840156_SNP [dm3] 2L_21840156_SNP [dm6]	G	T	4.343e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11677674	X_11677674_SNP [dm3] X_11783641_SNP [dm6]	A	T	4.354e^-4	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	6864623	3R_6864623_SNP [dm3] 3R_11038901_SNP [dm6]	G	C	4.359e^-4	0.817	INTRON CG34114	TF binding site mE1_TFBS_inv
3R	26786074	3R_26786074_SNP [dm3] 3R_30960352_SNP [dm6]	A	G	4.369e^-4	0.817	SYNONYMOUS_CODING CG15548
3L	5305194	3L_5305194_SNP [dm3] 3L_5312094_SNP [dm6]	G	A	4.371e^-4	0.817	INTERGENIC
2L	6057693	2L_6057693_SNP [dm3] 2L_6057693_SNP [dm6]	G	T	4.381e^-4	0.817	SYNONYMOUS_CODING CG13995	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10425191	2L_10425191_SNP [dm3] 2L_10425191_SNP [dm6]	G	C	4.384e^-4	0.817	SYNONYMOUS_CODING CG5168 DOWNSTREAM SmB
3L	10413795	3L_10413795_SNP [dm3] 3L_10420695_SNP [dm6]	T	C	4.385e^-4	0.817	INTERGENIC
2L	6003262	2L_6003262_SNP [dm3] 2L_6003262_SNP [dm6]	C	A	4.386e^-4	0.817	UTR_3_PRIME Tsp26A UPSTREAM CR43866 DOWNSTREAM Gal
2R	3503149	2R_3503149_SNP [dm3] 2R_7615644_SNP [dm6]	C	T	4.400e^-4	0.819	INTRON CG1358
2R	16798543	2R_16798543_SNP [dm3] 2R_20911038_SNP [dm6]	G	A	4.411e^-4	0.82	DOWNSTREAM CG9235 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22268111	3R_22268111_SNP [dm3] 3R_26442389_SNP [dm6]	T	A	4.418e^-4	0.82	INTRON tx
X	22197517	X_22197517_SNP [dm3] X_22795681_SNP [dm6]	T	A	4.421e^-4	0.82	INTRON CR44997
2R	6645242	2R_6645242_SNP [dm3] 2R_10757737_SNP [dm6]	C	A	4.440e^-4	0.82	INTRON CG33144	TF binding site mE1_TFBS_chinmo
2R	13380968	2R_13380968_SNP [dm3] 2R_17493463_SNP [dm6]	T	C	4.444e^-4	0.82	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2L	3437255	2L_3437255_SNP [dm3] 2L_3437255_SNP [dm6]	C	G	4.459e^-4	0.82	INTERGENIC
3L	1145265	3L_1145265_SNP [dm3] 3L_1145265_SNP [dm6]	A	G	4.459e^-4	0.82	INTRON bab2
X	19157811	X_19157811_SNP [dm3] X_19263778_SNP [dm6]	T	C	4.465e^-4	0.82	INTRON Vav	TF binding site BDTNP1_TFBS_dl
3R	15972312	3R_15972312_SNP [dm3] 3R_20146590_SNP [dm6]	T	C	4.482e^-4	0.82	INTERGENIC
2L	2787502	2L_2787502_SNP [dm3] 2L_2787502_SNP [dm6]	A	G	4.485e^-4	0.82	INTRON Syt1
3L	21596410	3L_21596410_SNP [dm3] 3L_21603310_SNP [dm6]	C	T	4.493e^-4	0.82	INTRON TfAP-2	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19543316	3R_19543316_SNP [dm3] 3R_23717594_SNP [dm6]	G	A	4.499e^-4	0.82	SYNONYMOUS_CODING nau	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14799943	3L_14799943_SNP [dm3] 3L_14806843_SNP [dm6]	A	T	4.504e^-4	0.82	INTRON CG17839
2R	15861370	2R_15861370_SNP [dm3] 2R_19973865_SNP [dm6]	T	C	4.508e^-4	0.82	INTERGENIC
2R	4251686	2R_4251686_SNP [dm3] 2R_8364181_SNP [dm6]	C	T	4.513e^-4	0.82	SYNONYMOUS_CODING swif UTR_3_PRIME cola UPSTREAM whip INTRON pdm3
3L	13392983	3L_13392983_SNP [dm3] 3L_13399883_SNP [dm6]	G	A	4.520e^-4	0.82	SYNONYMOUS_CODING sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13392998	3L_13392998_SNP [dm3] 3L_13399898_SNP [dm6]	A	G	4.520e^-4	0.82	SYNONYMOUS_CODING sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15911901	2R_15911901_INS [dm3] 2R_20024396_INS [dm6]	T	TGT	4.523e^-4	0.82	INTERGENIC
2R	15911913	2R_15911913_SNP [dm3] 2R_20024408_SNP [dm6]	A	T	4.523e^-4	0.82	INTERGENIC
2R	15911921	2R_15911921_SNP [dm3] 2R_20024416_SNP [dm6]	T	G	4.523e^-4	0.82	INTERGENIC
3L	8655363	3L_8655363_SNP [dm3] 3L_8662263_SNP [dm6]	A	G	4.524e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2288349	3L_2288349_SNP [dm3] 3L_2288349_SNP [dm6]	G	A	4.526e^-4	0.82	INTRON MsR2
3L	2288357	3L_2288357_DEL [dm3] 3L_2288357_DEL [dm6]	GCTTTTGTTA	G	4.526e^-4	0.82	INTRON MsR2
2R	13544981	2R_13544981_SNP [dm3] 2R_17657476_SNP [dm6]	G	A	4.529e^-4	0.82	INTRON CCHa1-R	TF binding site mE1_TFBS_sens
2L	16242968	2L_16242968_SNP [dm3] 2L_16242968_SNP [dm6]	C	T	4.534e^-4	0.82	SYNONYMOUS_CODING CG42818
3L	22839110	3L_22839110_INS [dm3] 3L_22846010_INS [dm6]	T	TGTAGTGCAAAATCATTATT...	4.543e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19718120	2L_19718120_SNP [dm3] 2L_19718120_SNP [dm6]	T	C	4.551e^-4	0.82	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8234730	2L_8234730_SNP [dm3] 2L_8234730_SNP [dm6]	C	T	4.551e^-4	0.82	INTRON Pvr
2L	8235351	2L_8235351_SNP [dm3] 2L_8235351_SNP [dm6]	T	A	4.551e^-4	0.82	INTRON Pvr
X	18462623	X_18462623_DEL [dm3] X_18568590_DEL [dm6]	TAGAA	CT	4.561e^-4	0.82	INTRON Bx	TF binding site mE1_TFBS_chinmo
3L	10592061	3L_10592061_SNP [dm3] 3L_10598961_SNP [dm6]	T	G	4.570e^-4	0.82	INTERGENIC
3L	10592066	3L_10592066_SNP [dm3] 3L_10598966_SNP [dm6]	G	C	4.570e^-4	0.82	INTERGENIC
3L	10592076	3L_10592076_SNP [dm3] 3L_10598976_SNP [dm6]	T	A	4.570e^-4	0.82	INTERGENIC
3L	10592077	3L_10592077_SNP [dm3] 3L_10598977_SNP [dm6]	C	T	4.570e^-4	0.82	INTERGENIC
X	2336635	X_2336635_SNP [dm3] X_2442602_SNP [dm6]	A	G	4.572e^-4	0.82	SYNONYMOUS_CODING tko	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	968456	2L_968456_SNP [dm3] 2L_968456_SNP [dm6]	T	C	4.588e^-4	0.822	INTERGENIC
2R	13766432	2R_13766432_SNP [dm3] 2R_17878927_SNP [dm6]	A	G	4.591e^-4	0.822	SYNONYMOUS_CODING CG30325 INTRON Elk
2R	17687977	2R_17687977_SNP [dm3] 2R_21800472_SNP [dm6]	T	A	4.594e^-4	0.822	SYNONYMOUS_CODING CG4386	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11365750	3L_11365750_SNP [dm3] 3L_11372650_SNP [dm6]	T	C	4.599e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	11195294	3L_11195294_SNP [dm3] 3L_11202194_SNP [dm6]	G	C	4.618e^-4	0.825	DOWNSTREAM CG14141 INTRON Plod
2R	7084378	2R_7084378_SNP [dm3] 2R_11196873_SNP [dm6]	C	A	4.644e^-4	0.826	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	1145319	3L_1145319_SNP [dm3] 3L_1145319_SNP [dm6]	T	C	4.646e^-4	0.826	INTRON bab2
X	22225881	X_22225881_SNP [dm3] X_22824045_SNP [dm6]	G	T	4.649e^-4	0.826	DOWNSTREAM fog INTERGENIC	transposable element FlyBase
X	22156933	X_22156933_SNP [dm3] X_22755097_SNP [dm6]	G	C	4.656e^-4	0.826	INTRON CR44997	transposable element FlyBase
2R	4157542	2R_4157542_SNP [dm3] 2R_8270037_SNP [dm6]	G	T	4.661e^-4	0.826	UPSTREAM CG30371 INTERGENIC
2L	1088771	2L_1088771_SNP [dm3] 2L_1088771_SNP [dm6]	G	A	4.677e^-4	0.826	INTRON CG4629
2R	13046001	2R_13046001_SNP [dm3] 2R_17158496_SNP [dm6]	G	A	4.679e^-4	0.826	SYNONYMOUS_CODING CG30458 UPSTREAM CG17287
2R	17755524	2R_17755524_SNP [dm3] 2R_21868019_SNP [dm6]	C	G	4.696e^-4	0.826	INTERGENIC
X	16818146	X_16818146_DEL [dm3] X_16924113_DEL [dm6]	GG	G	4.700e^-4	0.826	INTRON CG4928
2R	6645265	2R_6645265_SNP [dm3] 2R_10757760_SNP [dm6]	C	A	4.701e^-4	0.826	INTRON CG33144	TF binding site mE1_TFBS_chinmo
3L	8069537	3L_8069537_SNP [dm3] 3L_8076437_SNP [dm6]	C	T	4.705e^-4	0.826	UPSTREAM Ect4 INTRON Ect4	TF binding site mE1_TFBS_Trl

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.898e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.07446

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	3.4712	0.0624

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1317 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	18142927	3L_18142927_SNP [dm3] 3L_18149827_SNP [dm6]	C	A	2.556e^-6	0.904	INTRON CG7330
3L	18142809	3L_18142809_SNP [dm3] 3L_18149709_SNP [dm6]	A	G	3.253e^-6	0.904	INTRON CG7330
3L	12587894	3L_12587894_SNP [dm3] 3L_12594794_SNP [dm6]	C	T	6.841e^-6	0.904	SYNONYMOUS_CODING ara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8244847	3L_8244847_SNP [dm3] 3L_8251747_SNP [dm6]	A	T	8.079e^-6	0.904	INTRON Dscam4
2R	13797553	2R_13797553_SNP [dm3] 2R_17910048_SNP [dm6]	G	A	8.549e^-6	0.904	INTRON Elk
3L	1144590	3L_1144590_SNP [dm3] 3L_1144590_SNP [dm6]	G	C	1.012e^-5	0.904	INTRON bab2
3R	19831017	3R_19831017_DEL [dm3] 3R_24005295_DEL [dm6]	CC	C	1.012e^-5	0.904	INTRON KrT95D
3L	16329452	3L_16329452_SNP [dm3] 3L_16336352_SNP [dm6]	G	A	1.106e^-5	0.904	INTERGENIC
2R	6435275	2R_6435275_SNP [dm3] 2R_10547770_SNP [dm6]	A	T	1.109e^-5	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11485934	2L_11485934_SNP [dm3] 2L_11485934_SNP [dm6]	C	T	1.452e^-5	0.904	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11485937	2L_11485937_SNP [dm3] 2L_11485937_SNP [dm6]	T	C	1.452e^-5	0.904	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19013997	3R_19013997_SNP [dm3] 3R_23188275_SNP [dm6]	C	T	1.496e^-5	0.904	NON_SYNONYMOUS_CODING cnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2468353	X_2468353_SNP [dm3] X_2574320_SNP [dm6]	T	C	1.594e^-5	0.904	INTRON Pdfr
X	2987420	X_2987420_SNP [dm3] X_3093387_SNP [dm6]	T	A	1.621e^-5	0.904	INTRON kirre	regulatory region REDfly_CRMs
2L	2673296	2L_2673296_SNP [dm3] 2L_2673296_SNP [dm6]	C	A	1.732e^-5	0.904	INTERGENIC
X	2987421	X_2987421_SNP [dm3] X_3093388_SNP [dm6]	A	T	1.832e^-5	0.904	INTRON kirre	regulatory region REDfly_CRMs
2L	21860187	2L_21860187_SNP [dm3] 2L_21860187_SNP [dm6]	C	A	1.848e^-5	0.904	INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_jumu
X	2468354	X_2468354_SNP [dm3] X_2574321_SNP [dm6]	C	A	1.891e^-5	0.904	INTRON Pdfr
3L	18143699	3L_18143699_DEL [dm3] 3L_18150599_DEL [dm6]	AAGA	A	1.923e^-5	0.904	INTRON CG7330
3L	6746203	3L_6746203_SNP [dm3] 3L_6753103_SNP [dm6]	A	G	2.255e^-5	0.904	UTR_5_PRIME CG8549 UPSTREAM velo DOWNSTREAM CG10103	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	6469796	2R_6469796_SNP [dm3] 2R_10582291_SNP [dm6]	G	C	2.285e^-5	0.904	INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA
X	2468332	X_2468332_SNP [dm3] X_2574299_SNP [dm6]	G	A	2.344e^-5	0.904	INTRON Pdfr
X	3080382	X_3080382_DEL [dm3] X_3186349_DEL [dm6]	CGAAC	C	2.711e^-5	0.904	INTRON dnc
2R	9214527	2R_9214527_SNP [dm3] 2R_13327022_SNP [dm6]	G	A	2.739e^-5	0.904	INTERGENIC
3L	4637228	3L_4637228_INS [dm3] 3L_4637228_INS [dm6]	C	CGC	3.050e^-5	0.904	UTR_3_PRIME axo INTRON axo
2R	7425910	2R_7425910_SNP [dm3] 2R_11538405_SNP [dm6]	T	C	3.141e^-5	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14327416	3R_14327416_SNP [dm3] 3R_18501694_SNP [dm6]	C	T	3.295e^-5	0.904	INTRON fru
2R	6470237	2R_6470237_SNP [dm3] 2R_10582732_SNP [dm6]	A	G	4.240e^-5	0.904	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3R	9292548	3R_9292548_DEL [dm3] 3R_13466826_DEL [dm6]	TCG	T	4.283e^-5	0.904	UPSTREAM CR17025 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9568132	3L_9568132_SNP [dm3] 3L_9575032_SNP [dm6]	T	C	4.323e^-5	0.904	INTRON CG42673
2L	3455543	2L_3455543_SNP [dm3] 2L_3455543_SNP [dm6]	A	G	4.378e^-5	0.904	INTRON Cog3
3L	13162951	3L_13162951_SNP [dm3] 3L_13169851_SNP [dm6]	T	C	4.460e^-5	0.904	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	6469974	2R_6469974_SNP [dm3] 2R_10582469_SNP [dm6]	G	C	4.483e^-5	0.904	INTRON psq	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	7425892	2R_7425892_SNP [dm3] 2R_11538387_SNP [dm6]	A	T	4.576e^-5	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11486035	2L_11486035_SNP [dm3] 2L_11486035_SNP [dm6]	G	C	4.582e^-5	0.904	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18143658	3L_18143658_DEL [dm3] 3L_18150558_DEL [dm6]	TCAATTAAATTAT...	T	4.759e^-5	0.904	INTRON CG7330
3L	18143708	3L_18143708_INS [dm3] 3L_18150608_INS [dm6]	T	TATAATATCA	4.759e^-5	0.904	INTRON CG7330
3L	18143713	3L_18143713_DEL [dm3] 3L_18150613_DEL [dm6]	AATGA	A	4.759e^-5	0.904	INTRON CG7330
2L	15116030	2L_15116030_SNP [dm3] 2L_15116030_SNP [dm6]	A	C	4.762e^-5	0.904	SYNONYMOUS_CODING stc	TF binding site mE1_TFBS_chinmo
3L	13165211	3L_13165211_SNP [dm3] 3L_13172111_SNP [dm6]	T	G	4.831e^-5	0.904	INTERGENIC
3R	22188326	3R_22188326_SNP [dm3] 3R_26362604_SNP [dm6]	T	G	4.950e^-5	0.904	DOWNSTREAM CG33970 INTERGENIC
2R	12260924	2R_12260924_SNP [dm3] 2R_16373419_SNP [dm6]	T	C	4.975e^-5	0.904	INTERGENIC
2R	16185924	2R_16185924_SNP [dm3] 2R_20298419_SNP [dm6]	C	T	5.205e^-5	0.904	INTERGENIC
3L	1145320	3L_1145320_DEL [dm3] 3L_1145320_DEL [dm6]	TTGT	T	5.289e^-5	0.904	INTRON bab2
3R	12744207	3R_12744207_SNP [dm3] 3R_16918485_SNP [dm6]	G	T	5.495e^-5	0.904	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	6470450	2R_6470450_SNP [dm3] 2R_10582945_SNP [dm6]	A	G	5.727e^-5	0.904	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	18695273	3L_18695273_SNP [dm3] 3L_18702173_SNP [dm6]	G	A	5.729e^-5	0.904	INTERGENIC
3R	2444601	3R_2444601_SNP [dm3] 3R_6618879_SNP [dm6]	C	G	5.815e^-5	0.904	INTERGENIC
2L	8349685	2L_8349685_SNP [dm3] 2L_8349685_SNP [dm6]	G	T	5.915e^-5	0.904	INTRON CG7778
2R	7425906	2R_7425906_SNP [dm3] 2R_11538401_SNP [dm6]	G	T	5.986e^-5	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12252047	2R_12252047_SNP [dm3] 2R_16364542_SNP [dm6]	G	C	5.992e^-5	0.904	UTR_5_PRIME CG15711 UPSTREAM CG15711
X	16893271	X_16893271_DEL [dm3] X_16999238_DEL [dm6]	ATTTTCCACA	A	6.220e^-5	0.904	INTRON CG45002
3L	1145287	3L_1145287_DEL [dm3] 3L_1145287_DEL [dm6]	TGTTACTACTCCGCAGCTTT...	T	6.419e^-5	0.904	INTRON bab2
3L	1145315	3L_1145315_SNP [dm3] 3L_1145315_SNP [dm6]	A	C	6.419e^-5	0.904	INTRON bab2
3L	18142845	3L_18142845_SNP [dm3] 3L_18149745_SNP [dm6]	T	G	6.509e^-5	0.904	INTRON CG7330
3L	1145265	3L_1145265_SNP [dm3] 3L_1145265_SNP [dm6]	A	G	6.521e^-5	0.904	INTRON bab2
2R	6469957	2R_6469957_SNP [dm3] 2R_10582452_SNP [dm6]	C	G	6.588e^-5	0.904	INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
3R	10766158	3R_10766158_SNP [dm3] 3R_14940436_SNP [dm6]	T	A	6.628e^-5	0.904	INTERGENIC
2R	1753765	2R_1753765_SNP [dm3] 2R_5866260_SNP [dm6]	T	C	7.000e^-5	0.904	INTERGENIC
3L	6744655	3L_6744655_SNP [dm3] 3L_6751555_SNP [dm6]	T	A	7.017e^-5	0.904	INTRON velo	TF binding site BDTNP1_TFBS_Med
3L	6744715	3L_6744715_SNP [dm3] 3L_6751615_SNP [dm6]	G	A	7.017e^-5	0.904	INTRON velo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	19043871	X_19043871_INS [dm3] X_19149838_INS [dm6]	A	ACATACTATGCCTGCA...	7.051e^-5	0.904	INTRON RhoGAP18B
X	17427893	X_17427893_SNP [dm3] X_17533860_SNP [dm6]	A	C	7.144e^-5	0.904	SYNONYMOUS_CODING CG43658	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8349763	2L_8349763_SNP [dm3] 2L_8349763_SNP [dm6]	G	A	7.285e^-5	0.904	SYNONYMOUS_CODING CG7778
2R	7425891	2R_7425891_SNP [dm3] 2R_11538386_SNP [dm6]	A	T	7.308e^-5	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11765195	3R_11765195_INS [dm3] 3R_15939473_INS [dm6]	C	CCGTCC	7.471e^-5	0.904	INTRON Sap47
2R	7402770	2R_7402770_SNP [dm3] 2R_11515265_SNP [dm6]	C	A	7.579e^-5	0.904	INTERGENIC
2R	6470031	2R_6470031_SNP [dm3] 2R_10582526_SNP [dm6]	C	G	7.653e^-5	0.904	INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	12953184	2L_12953184_SNP [dm3] 2L_12953184_SNP [dm6]	T	C	7.768e^-5	0.904	INTERGENIC
X	3901575	X_3901575_SNP [dm3] X_4007542_SNP [dm6]	C	T	7.779e^-5	0.904	INTERGENIC
2R	15129606	2R_15129606_SNP [dm3] 2R_19242101_SNP [dm6]	A	G	7.838e^-5	0.904	INTRON cora
2L	7192465	2L_7192465_SNP [dm3] 2L_7192465_SNP [dm6]	T	C	7.851e^-5	0.904	INTRON CG4497
3L	7027314	3L_7027314_SNP [dm3] 3L_7034214_SNP [dm6]	C	T	7.971e^-5	0.904	INTRON Mp
3L	11424009	3L_11424009_SNP [dm3] 3L_11430909_SNP [dm6]	C	T	8.000e^-5	0.904	INTERGENIC
3L	16329502	3L_16329502_SNP [dm3] 3L_16336402_SNP [dm6]	G	T	8.180e^-5	0.904	INTERGENIC
2R	6301587	2R_6301587_SNP [dm3] 2R_10414082_SNP [dm6]	T	C	8.424e^-5	0.904	INTRON CG42732	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11486093	2L_11486093_SNP [dm3] 2L_11486093_SNP [dm6]	A	C	8.854e^-5	0.904	UTR_5_PRIME sala UTR_3_PRIME CG43355 UPSTREAM sala DOWNSTREAM CG43355	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18142840	3L_18142840_INS [dm3] 3L_18149740_INS [dm6]	T	CCA	8.926e^-5	0.904	INTRON CG7330
2R	9385853	2R_9385853_SNP [dm3] 2R_13498348_SNP [dm6]	G	A	9.015e^-5	0.904	INTRON drk
2L	8569705	2L_8569705_SNP [dm3] 2L_8569705_SNP [dm6]	G	A	9.163e^-5	0.904	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14389610	2L_14389610_SNP [dm3] 2L_14389610_SNP [dm6]	A	G	9.184e^-5	0.904	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16640074	2R_16640074_SNP [dm3] 2R_20752569_SNP [dm6]	A	G	9.198e^-5	0.904	UPSTREAM CG34202 DOWNSTREAM CG34201 INTERGENIC
3L	18142848	3L_18142848_SNP [dm3] 3L_18149748_SNP [dm6]	C	T	9.407e^-5	0.904	INTRON CG7330
3L	18142857	3L_18142857_SNP [dm3] 3L_18149757_SNP [dm6]	A	C	9.407e^-5	0.904	INTRON CG7330
3R	9292522	3R_9292522_DEL [dm3] 3R_13466800_DEL [dm6]	ACGATGATGTGCGATGATGT...	A	9.450e^-5	0.904	UPSTREAM CR17025 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9292547	3R_9292547_SNP [dm3] 3R_13466825_SNP [dm6]	C	G	9.450e^-5	0.904	UPSTREAM CR17025 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22913542	3R_22913542_SNP [dm3] 3R_27087820_SNP [dm6]	C	T	9.569e^-5	0.904	UPSTREAM Cpr97Ea INTERGENIC
3L	13165183	3L_13165183_SNP [dm3] 3L_13172083_SNP [dm6]	A	C	9.572e^-5	0.904	INTERGENIC
3L	2711077	3L_2711077_SNP [dm3] 3L_2711077_SNP [dm6]	A	T	9.604e^-5	0.904	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8571708	2L_8571708_SNP [dm3] 2L_8571708_SNP [dm6]	G	A	9.623e^-5	0.904	DOWNSTREAM tRNA:CR31895 INTRON Sema-1a
2R	6470178	2R_6470178_SNP [dm3] 2R_10582673_SNP [dm6]	C	T	9.873e^-5	0.904	INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	21900339	3L_21900339_INS [dm3] 3L_21907239_INS [dm6]	C	CC	9.946e^-5	0.904	INTRON mub
2L	8349682	2L_8349682_SNP [dm3] 2L_8349682_SNP [dm6]	G	C	9.949e^-5	0.904	INTRON CG7778
3L	14073087	3L_14073087_SNP [dm3] 3L_14079987_SNP [dm6]	C	A	1.000e^-4	0.904	NON_SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_sens
2R	4730684	2R_4730684_SNP [dm3] 2R_8843179_SNP [dm6]	C	T	1.005e^-4	0.904	SYNONYMOUS_CODING sns	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7326340	X_7326340_SNP [dm3] X_7432307_SNP [dm6]	C	T	1.035e^-4	0.904	INTERGENIC
2L	2351295	2L_2351295_SNP [dm3] 2L_2351295_SNP [dm6]	G	C	1.041e^-4	0.904	INTRON CG9967 & 1 other
3L	1146549	3L_1146549_SNP [dm3] 3L_1146549_SNP [dm6]	T	C	1.066e^-4	0.904	INTRON bab2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12663954	2R_12663954_SNP [dm3] 2R_16776449_SNP [dm6]	G	A	1.084e^-4	0.904	DOWNSTREAM Arp53D INTERGENIC
3R	13310107	3R_13310107_SNP [dm3] 3R_17484385_SNP [dm6]	C	T	1.104e^-4	0.904	SYNONYMOUS_CODING Dscam3
3L	18142771	3L_18142771_INS [dm3] 3L_18149671_INS [dm6]	A	AA	1.112e^-4	0.904	INTRON CG7330
2L	13312998	2L_13312998_SNP [dm3] 2L_13312998_SNP [dm6]	C	T	1.133e^-4	0.904	INTRON CG43778
3L	6744877	3L_6744877_SNP [dm3] 3L_6751777_SNP [dm6]	T	G	1.141e^-4	0.904	INTRON velo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	6744983	3L_6744983_SNP [dm3] 3L_6751883_SNP [dm6]	T	C	1.141e^-4	0.904	INTRON velo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	14428093	3L_14428093_SNP [dm3] 3L_14434993_SNP [dm6]	G	T	1.172e^-4	0.904	INTRON bbg
3L	2785665	3L_2785665_SNP [dm3] 3L_2785665_SNP [dm6]	C	A	1.175e^-4	0.904	UTR_3_PRIME pgant6 DOWNSTREAM CG43444
2R	6190595	2R_6190595_SNP [dm3] 2R_10303090_SNP [dm6]	C	T	1.197e^-4	0.904	UPSTREAM CAP INTRON CAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6889230	2R_6889230_SNP [dm3] 2R_11001725_SNP [dm6]	C	A	1.226e^-4	0.904	INTRON luna
3L	6764206	3L_6764206_SNP [dm3] 3L_6771106_SNP [dm6]	C	A	1.240e^-4	0.904	INTERGENIC
2R	13797505	2R_13797505_SNP [dm3] 2R_17910000_SNP [dm6]	G	A	1.246e^-4	0.904	INTRON Elk
3L	18142513	3L_18142513_SNP [dm3] 3L_18149413_SNP [dm6]	T	G	1.248e^-4	0.904	INTRON CG7330
2R	17717086	2R_17717086_SNP [dm3] 2R_21829581_SNP [dm6]	A	G	1.251e^-4	0.904	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_HSA
3L	20148940	3L_20148940_SNP [dm3] 3L_20155840_SNP [dm6]	A	G	1.253e^-4	0.904	INTRON CG42674
2L	19565554	2L_19565554_SNP [dm3] 2L_19565554_SNP [dm6]	C	A	1.257e^-4	0.904	UPSTREAM CG13077 DOWNSTREAM CG13078 INTERGENIC
2R	12604445	2R_12604445_SNP [dm3] 2R_16716940_SNP [dm6]	C	T	1.275e^-4	0.904	INTRON CG30463
2L	13060046	2L_13060046_INS [dm3] 2L_13060046_INS [dm6]	T	TGTT	1.276e^-4	0.904	UTR_5_PRIME CG9932	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	13950647	2R_13950647_SNP [dm3] 2R_18063142_SNP [dm6]	G	A	1.287e^-4	0.904	INTRON CG34386
2R	13950649	2R_13950649_MNP [dm3] 2R_18063144_MNP [dm6]	TTC	AAA	1.287e^-4	0.904	INTRON CG34386
2R	13950656	2R_13950656_SNP [dm3] 2R_18063151_SNP [dm6]	C	A	1.287e^-4	0.904	INTRON CG34386
2R	13950657	2R_13950657_SNP [dm3] 2R_18063152_SNP [dm6]	C	T	1.287e^-4	0.904	INTRON CG34386
2R	13950659	2R_13950659_SNP [dm3] 2R_18063154_SNP [dm6]	G	T	1.287e^-4	0.904	INTRON CG34386
2L	6070866	2L_6070866_SNP [dm3] 2L_6070866_SNP [dm6]	C	A	1.292e^-4	0.904	UPSTREAM Kr-h2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3L	10211950	3L_10211950_SNP [dm3] 3L_10218850_SNP [dm6]	T	C	1.300e^-4	0.904	NON_SYNONYMOUS_CODING CG32055	TF binding site mE1_TFBS_sens
2R	9337941	2R_9337941_SNP [dm3] 2R_13450436_SNP [dm6]	C	T	1.307e^-4	0.904	UTR_5_PRIME cnn UPSTREAM cbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	12260952	2R_12260952_SNP [dm3] 2R_16373447_SNP [dm6]	C	T	1.317e^-4	0.904	INTERGENIC
3L	14073017	3L_14073017_SNP [dm3] 3L_14079917_SNP [dm6]	T	G	1.317e^-4	0.904	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_sens
3L	14073021	3L_14073021_SNP [dm3] 3L_14079921_SNP [dm6]	G	A	1.317e^-4	0.904	NON_SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_sens
3L	16433661	3L_16433661_SNP [dm3] 3L_16440561_SNP [dm6]	T	A	1.320e^-4	0.904	INTRON CG33158 & 1 other
3L	16433664	3L_16433664_SNP [dm3] 3L_16440564_SNP [dm6]	T	G	1.320e^-4	0.904	INTRON CG33158 & 1 other
3L	16433665	3L_16433665_SNP [dm3] 3L_16440565_SNP [dm6]	A	G	1.320e^-4	0.904	INTRON CG33158 & 1 other
2R	13072845	2R_13072845_SNP [dm3] 2R_17185340_SNP [dm6]	C	A	1.324e^-4	0.904	EXON CR44387
3R	23113624	3R_23113624_SNP [dm3] 3R_27287902_SNP [dm6]	T	C	1.362e^-4	0.904	SYNONYMOUS_CODING bigmax UPSTREAM Hmu DOWNSTREAM CG3368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	3901568	X_3901568_DEL [dm3] X_4007535_DEL [dm6]	AA	A	1.366e^-4	0.904	INTERGENIC
2L	4316422	2L_4316422_SNP [dm3] 2L_4316422_SNP [dm6]	A	G	1.369e^-4	0.904	DOWNSTREAM tutl INTRON tutl
3L	21380037	3L_21380037_SNP [dm3] 3L_21386937_SNP [dm6]	C	T	1.370e^-4	0.904	INTRON rgn
2R	7587059	2R_7587059_SNP [dm3] 2R_11699554_SNP [dm6]	G	A	1.393e^-4	0.904	EXON Ir48a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7587070	2R_7587070_SNP [dm3] 2R_11699565_SNP [dm6]	T	C	1.393e^-4	0.904	EXON Ir48a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3080373	X_3080373_MNP [dm3] X_3186340_MNP [dm6]	TATA	CGAC	1.401e^-4	0.904	INTRON dnc
2R	9339068	2R_9339068_SNP [dm3] 2R_13451563_SNP [dm6]	C	T	1.410e^-4	0.904	SYNONYMOUS_CODING cbs	TF binding site mE1_TFBS_sens
3L	5465594	3L_5465594_SNP [dm3] 3L_5472494_SNP [dm6]	T	A	1.412e^-4	0.904	INTERGENIC
3L	13167826	3L_13167826_SNP [dm3] 3L_13174726_SNP [dm6]	T	A	1.419e^-4	0.904	SYNONYMOUS_CODING snky
2R	6470137	2R_6470137_SNP [dm3] 2R_10582632_SNP [dm6]	G	A	1.433e^-4	0.904	INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3R	17980377	3R_17980377_SNP [dm3] 3R_22154655_SNP [dm6]	T	G	1.451e^-4	0.904	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	13548048	3L_13548048_SNP [dm3] 3L_13554948_SNP [dm6]	T	A	1.482e^-4	0.904	INTRON bru-3
2R	7679832	2R_7679832_SNP [dm3] 2R_11792327_SNP [dm6]	C	T	1.486e^-4	0.904	INTRON ths	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6435226	2R_6435226_SNP [dm3] 2R_10547721_SNP [dm6]	G	A	1.487e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7587011	2R_7587011_SNP [dm3] 2R_11699506_SNP [dm6]	T	C	1.491e^-4	0.904	EXON Ir48a	TF binding site mE1_TFBS_sens
2L	14387886	2L_14387886_SNP [dm3] 2L_14387886_SNP [dm6]	A	C	1.502e^-4	0.904	INTERGENIC
3L	1145319	3L_1145319_SNP [dm3] 3L_1145319_SNP [dm6]	T	C	1.513e^-4	0.904	INTRON bab2
2R	15129613	2R_15129613_SNP [dm3] 2R_19242108_SNP [dm6]	C	T	1.522e^-4	0.904	INTRON cora
2R	10947049	2R_10947049_SNP [dm3] 2R_15059544_SNP [dm6]	G	C	1.537e^-4	0.904	INTERGENIC
3L	877143	3L_877143_SNP [dm3] 3L_877143_SNP [dm6]	G	A	1.554e^-4	0.904	DOWNSTREAM CG13907 INTRON CG32479
3R	14327422	3R_14327422_SNP [dm3] 3R_18501700_SNP [dm6]	T	C	1.558e^-4	0.904	INTRON fru
X	9195197	X_9195197_DEL [dm3] X_9301164_DEL [dm6]	ATTTGCTTTTTG...	A	1.558e^-4	0.904	INTRON lz
3R	12747607	3R_12747607_DEL [dm3] 3R_16921885_DEL [dm6]	AGTGCTTTAATAATACGTGA...	A	1.559e^-4	0.904	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	27281180	3R_27281180_SNP [dm3] 3R_31455458_SNP [dm6]	A	T	1.562e^-4	0.904	SPLICE_SITE_REGION Gprk2 INTRON Gprk2	TF binding site mE1_TFBS_cad
2R	19512246	2R_19512246_SNP [dm3] 2R_23624723_SNP [dm6]	A	T	1.564e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13820127	X_13820127_SNP [dm3] X_13926094_SNP [dm6]	A	C	1.578e^-4	0.904	INTRON mamo	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	6469808	2R_6469808_SNP [dm3] 2R_10582303_SNP [dm6]	C	G	1.590e^-4	0.904	INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA
3L	14421696	3L_14421696_SNP [dm3] 3L_14428596_SNP [dm6]	G	A	1.603e^-4	0.904	INTRON bbg
2R	13797536	2R_13797536_SNP [dm3] 2R_17910031_SNP [dm6]	A	C	1.604e^-4	0.904	INTRON Elk
2R	11968675	2R_11968675_SNP [dm3] 2R_16081170_SNP [dm6]	T	C	1.606e^-4	0.904	DOWNSTREAM Dg INTERGENIC
2R	16965455	2R_16965455_SNP [dm3] 2R_21077950_SNP [dm6]	G	A	1.612e^-4	0.904	INTRON Treh
3L	10674835	3L_10674835_SNP [dm3] 3L_10681735_SNP [dm6]	A	G	1.617e^-4	0.904	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3L	9850146	3L_9850146_SNP [dm3] 3L_9857046_SNP [dm6]	C	T	1.617e^-4	0.904	DOWNSTREAM CG10809 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D
3L	985701	3L_985701_SNP [dm3] 3L_985701_SNP [dm6]	G	C	1.651e^-4	0.904	DOWNSTREAM Glut1 INTRON Glut1
3R	11348861	3R_11348861_SNP [dm3] 3R_15523139_SNP [dm6]	A	G	1.691e^-4	0.904	INTERGENIC
3L	4650033	3L_4650033_SNP [dm3] 3L_4650033_SNP [dm6]	G	A	1.704e^-4	0.904	SYNONYMOUS_CODING CG32238 INTRON axo
2L	12854893	2L_12854893_SNP [dm3] 2L_12854893_SNP [dm6]	A	G	1.718e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9825569	2L_9825569_INS [dm3] 2L_9825569_INS [dm6]	C	CCAAGACCAAAGGCC...	1.741e^-4	0.904	INTRON nAChRalpha6
3L	16433667	3L_16433667_DEL [dm3] 3L_16440567_DEL [dm6]	GTCATCATC	G	1.748e^-4	0.904	INTRON CG33158 & 1 other
2R	6190599	2R_6190599_SNP [dm3] 2R_10303094_SNP [dm6]	G	A	1.752e^-4	0.904	UPSTREAM CAP INTRON CAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9339062	2R_9339062_SNP [dm3] 2R_13451557_SNP [dm6]	A	G	1.758e^-4	0.904	SYNONYMOUS_CODING cbs	TF binding site mE1_TFBS_sens
2R	9339071	2R_9339071_SNP [dm3] 2R_13451566_SNP [dm6]	G	A	1.758e^-4	0.904	SYNONYMOUS_CODING cbs	TF binding site mE1_TFBS_sens
3R	22883018	3R_22883018_INS [dm3] 3R_27057296_INS [dm6]	C	CTTC	1.763e^-4	0.904	DOWNSTREAM Nep5 & 1 other INTRON RYa-R
2R	7425878	2R_7425878_SNP [dm3] 2R_11538373_SNP [dm6]	G	A	1.767e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
X	2338456	X_2338456_SNP [dm3] X_2444423_SNP [dm6]	C	A	1.775e^-4	0.904	UTR_3_PRIME boi UPSTREAM tko	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
X	10571706	X_10571706_SNP [dm3] X_10677673_SNP [dm6]	T	G	1.783e^-4	0.904	INTRON X11Lbeta
3L	18144007	3L_18144007_SNP [dm3] 3L_18150907_SNP [dm6]	A	G	1.785e^-4	0.904	INTRON CG7330
2R	18976625	2R_18976625_DEL [dm3] 2R_23089102_DEL [dm6]	AT	A	1.812e^-4	0.904	DOWNSTREAM CG13538 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	18118795	3L_18118795_SNP [dm3] 3L_18125695_SNP [dm6]	T	A	1.844e^-4	0.904	INTERGENIC
2L	6071760	2L_6071760_SNP [dm3] 2L_6071760_SNP [dm6]	C	A	1.854e^-4	0.904	UPSTREAM Kr-h2 INTRON Kr-h2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	13927387	2R_13927387_SNP [dm3] 2R_18039882_SNP [dm6]	A	T	1.876e^-4	0.904	INTERGENIC
X	2478322	X_2478322_SNP [dm3] X_2584289_SNP [dm6]	C	A	1.881e^-4	0.904	UTR_3_PRIME CG13760 DOWNSTREAM CG13759
2R	6435210	2R_6435210_SNP [dm3] 2R_10547705_SNP [dm6]	A	G	1.899e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11995236	3R_11995236_SNP [dm3] 3R_16169514_SNP [dm6]	C	A	1.904e^-4	0.904	UPSTREAM CR43472 INTRON CG6006	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2872465	2R_2872465_SNP [dm3] 2R_6984960_SNP [dm6]	A	G	1.927e^-4	0.904	INTRON vimar & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25879427	3R_25879427_SNP [dm3] 3R_30053705_SNP [dm6]	G	A	1.938e^-4	0.904	SYNONYMOUS_CODING CG7946 DOWNSTREAM spn-A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12204272	3L_12204272_SNP [dm3] 3L_12211172_SNP [dm6]	C	T	1.949e^-4	0.904	UTR_3_PRIME app INTRON app
2L	3222209	2L_3222209_SNP [dm3] 2L_3222209_SNP [dm6]	A	G	1.955e^-4	0.904	INTERGENIC
3L	13709103	3L_13709103_INS [dm3] 3L_13716003_INS [dm6]	A	ACAGCAGCAGCAACAA...	1.959e^-4	0.904	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9221487	3L_9221487_SNP [dm3] 3L_9228387_SNP [dm6]	A	G	1.967e^-4	0.904	INTERGENIC
2R	4730683	2R_4730683_SNP [dm3] 2R_8843178_SNP [dm6]	T	A	1.968e^-4	0.904	NON_SYNONYMOUS_CODING sns	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6764207	3L_6764207_SNP [dm3] 3L_6771107_SNP [dm6]	G	A	1.979e^-4	0.904	INTERGENIC
2R	17471727	2R_17471727_SNP [dm3] 2R_21584222_SNP [dm6]	A	G	2.018e^-4	0.904	INTRON CG30222
2R	7679850	2R_7679850_SNP [dm3] 2R_11792345_SNP [dm6]	G	A	2.020e^-4	0.904	INTRON ths	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2711106	3L_2711106_SNP [dm3] 3L_2711106_SNP [dm6]	G	A	2.021e^-4	0.904	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6008785	3L_6008785_SNP [dm3] 3L_6015685_SNP [dm6]	T	A	2.023e^-4	0.904	INTRON PVRAP
2R	4728080	2R_4728080_SNP [dm3] 2R_8840575_SNP [dm6]	T	G	2.030e^-4	0.904	INTRON sns	TF binding site mE1_TFBS_cad
3L	12104855	3L_12104855_SNP [dm3] 3L_12111755_SNP [dm6]	C	A	2.030e^-4	0.904	INTERGENIC
2L	13266949	2L_13266949_INS [dm3] 2L_13266949_INS [dm6]	C	CA	2.040e^-4	0.904	UTR_5_PRIME CG44085 UPSTREAM CG44085 INTRON CG44085	TF binding site BDTNP1_TFBS_dl
2L	3856488	2L_3856488_SNP [dm3] 2L_3856488_SNP [dm6]	G	T	2.044e^-4	0.904	EXON CR45450	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	7147167	X_7147167_SNP [dm3] X_7253134_SNP [dm6]	A	G	2.047e^-4	0.904	INTRON CR44357	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	8462482	2R_8462482_SNP [dm3] 2R_12574977_SNP [dm6]	G	A	2.067e^-4	0.904	SPLICE_SITE_REGION ClC-b SYNONYMOUS_CODING ClC-b DOWNSTREAM Sin3A
2L	5684270	2L_5684270_SNP [dm3] 2L_5684270_SNP [dm6]	C	G	2.072e^-4	0.904	INTERGENIC
X	7147156	X_7147156_SNP [dm3] X_7253123_SNP [dm6]	A	T	2.077e^-4	0.904	INTRON CR44357	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	7210969	2L_7210969_SNP [dm3] 2L_7210969_SNP [dm6]	C	A	2.080e^-4	0.904	INTRON CG13784
2R	4634660	2R_4634660_SNP [dm3] 2R_8747155_SNP [dm6]	G	A	2.081e^-4	0.904	INTRON CG8740	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8244833	3L_8244833_SNP [dm3] 3L_8251733_SNP [dm6]	A	T	2.090e^-4	0.904	INTRON Dscam4
2R	17609108	2R_17609108_SNP [dm3] 2R_21721603_SNP [dm6]	C	T	2.103e^-4	0.904	INTRON LBR	TF binding site BDTNP1_TFBS_dl
3L	2790531	3L_2790531_SNP [dm3] 3L_2790531_SNP [dm6]	C	G	2.104e^-4	0.904	NON_SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18819800	3L_18819800_SNP [dm3] 3L_18826700_SNP [dm6]	C	T	2.126e^-4	0.904	SYNONYMOUS_CODING Cat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7210981	2L_7210981_SNP [dm3] 2L_7210981_SNP [dm6]	C	T	2.173e^-4	0.904	INTRON CG13784
3L	718856	3L_718856_SNP [dm3] 3L_718856_SNP [dm6]	T	C	2.182e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5804594	2L_5804594_SNP [dm3] 2L_5804594_SNP [dm6]	A	T	2.185e^-4	0.904	UPSTREAM CG11034 DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7022307	3L_7022307_SNP [dm3] 3L_7029207_SNP [dm6]	G	C	2.215e^-4	0.904	INTRON Mp
2R	12861079	2R_12861079_SNP [dm3] 2R_16973574_SNP [dm6]	C	T	2.223e^-4	0.904	UPSTREAM Cbp53E INTERGENIC
3L	2711078	3L_2711078_SNP [dm3] 3L_2711078_SNP [dm6]	G	A	2.232e^-4	0.904	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2470770	X_2470770_SNP [dm3] X_2576737_SNP [dm6]	A	T	2.232e^-4	0.904	UTR_3_PRIME Pdfr INTRON Pdfr
3L	6008786	3L_6008786_SNP [dm3] 3L_6015686_SNP [dm6]	G	C	2.233e^-4	0.904	INTRON PVRAP
3L	11426970	3L_11426970_SNP [dm3] 3L_11433870_SNP [dm6]	A	G	2.245e^-4	0.904	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	2850862	2R_2850862_SNP [dm3] 2R_6963357_SNP [dm6]	G	A	2.250e^-4	0.904	INTRON mim & 1 other
2L	14099874	2L_14099874_DEL [dm3] 2L_14099874_DEL [dm6]	ATATG	A	2.264e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18072972	3L_18072972_SNP [dm3] 3L_18079872_SNP [dm6]	T	C	2.274e^-4	0.904	INTERGENIC
2L	3455658	2L_3455658_SNP [dm3] 2L_3455658_SNP [dm6]	T	C	2.282e^-4	0.904	SYNONYMOUS_CODING Cog3	TF binding site mE1_TFBS_cad
3L	18142776	3L_18142776_SNP [dm3] 3L_18149676_SNP [dm6]	A	T	2.284e^-4	0.904	INTRON CG7330
2R	1755878	2R_1755878_SNP [dm3] 2R_5868373_SNP [dm6]	T	C	2.300e^-4	0.904	INTERGENIC
3L	11192362	3L_11192362_SNP [dm3] 3L_11199262_SNP [dm6]	T	C	2.316e^-4	0.904	SPLICE_SITE_REGION Plod UPSTREAM CG7607 INTRON Plod	TF binding site mE1_TFBS_sens
2R	17718062	2R_17718062_SNP [dm3] 2R_21830557_SNP [dm6]	C	A	2.319e^-4	0.904	INTRON CG13492
2R	6435267	2R_6435267_INS [dm3] 2R_10547762_INS [dm6]	G	GTT	2.323e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18976635	2R_18976635_SNP [dm3] 2R_23089112_SNP [dm6]	A	T	2.327e^-4	0.904	DOWNSTREAM CG13538 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11134759	3L_11134759_SNP [dm3] 3L_11141659_SNP [dm6]	A	C	2.334e^-4	0.904	INTRON CG32082
2R	12540489	2R_12540489_SNP [dm3] 2R_16652984_SNP [dm6]	G	A	2.350e^-4	0.904	UPSTREAM Amyrel DOWNSTREAM Nach INTERGENIC
3R	2462134	3R_2462134_SNP [dm3] 3R_6636412_SNP [dm6]	A	G	2.358e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_cad
3R	20990683	3R_20990683_SNP [dm3] 3R_25164961_SNP [dm6]	G	A	2.362e^-4	0.904	INTERGENIC
X	14787082	X_14787082_SNP [dm3] X_14893049_SNP [dm6]	G	T	2.366e^-4	0.904	INTRON Flo2 & 1 other
2R	17471746	2R_17471746_SNP [dm3] 2R_21584241_SNP [dm6]	T	A	2.367e^-4	0.904	INTRON CG30222
2L	16909945	2L_16909945_SNP [dm3] 2L_16909945_SNP [dm6]	C	A	2.368e^-4	0.904	SYNONYMOUS_CODING ApepP INTRON tweek	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18775431	3R_18775431_SNP [dm3] 3R_22949709_SNP [dm6]	G	A	2.376e^-4	0.904	INTRON klg
3L	10212080	3L_10212080_SNP [dm3] 3L_10218980_SNP [dm6]	C	T	2.377e^-4	0.904	NON_SYNONYMOUS_CODING CG32055	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14119206	2R_14119206_SNP [dm3] 2R_18231701_SNP [dm6]	T	G	2.394e^-4	0.904	UPSTREAM CR45311 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10376816	2L_10376816_SNP [dm3] 2L_10376816_SNP [dm6]	G	A	2.401e^-4	0.904	UTR_5_PRIME dpr19 INTRON dpr19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	2512493	X_2512493_SNP [dm3] X_2618460_SNP [dm6]	C	T	2.417e^-4	0.904	SYNONYMOUS_CODING Tsp3A
3R	11306505	3R_11306505_SNP [dm3] 3R_15480783_SNP [dm6]	A	G	2.418e^-4	0.904	INTERGENIC
3R	19439186	3R_19439186_SNP [dm3] 3R_23613464_SNP [dm6]	T	A	2.426e^-4	0.904	INTRON CG31145
3L	9221450	3L_9221450_DEL [dm3] 3L_9228350_DEL [dm6]	AGCAATTCACAAACAGGCT...	C	2.428e^-4	0.904	INTERGENIC
X	19044435	X_19044435_DEL [dm3] X_19150402_DEL [dm6]	AA	A	2.454e^-4	0.904	INTRON RhoGAP18B
3L	6764146	3L_6764146_SNP [dm3] 3L_6771046_SNP [dm6]	G	A	2.489e^-4	0.904	INTERGENIC
2R	17797342	2R_17797342_SNP [dm3] 2R_21909837_SNP [dm6]	G	A	2.497e^-4	0.904	INTRON Fili
2L	6235851	2L_6235851_SNP [dm3] 2L_6235851_SNP [dm6]	G	C	2.502e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
2L	6235859	2L_6235859_SNP [dm3] 2L_6235859_SNP [dm6]	T	A	2.502e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
4	490373	4_490373_SNP [dm3] 4_469747_SNP [dm6]	G	T	2.503e^-4	0.904	UTR_3_PRIME Asator INTRON pncr013:4
X	14243657	X_14243657_SNP [dm3] X_14349624_SNP [dm6]	T	G	2.526e^-4	0.904	INTRON dpr8
2R	1739485	2R_1739485_SNP [dm3] 2R_5851980_SNP [dm6]	T	A	2.543e^-4	0.904	INTRON dpr12
3L	19239731	3L_19239731_SNP [dm3] 3L_19246631_SNP [dm6]	T	G	2.550e^-4	0.904	INTERGENIC
3R	24517412	3R_24517412_SNP [dm3] 3R_28691690_SNP [dm6]	A	G	2.566e^-4	0.904	INTRON CG9990
2L	8570780	2L_8570780_SNP [dm3] 2L_8570780_SNP [dm6]	T	G	2.567e^-4	0.904	UPSTREAM tRNA:CR31895 INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2127822	3L_2127822_SNP [dm3] 3L_2127822_SNP [dm6]	A	G	2.580e^-4	0.904	SYNONYMOUS_CODING zormin INTRON zormin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22888334	3R_22888334_SNP [dm3] 3R_27062612_SNP [dm6]	G	A	2.591e^-4	0.904	NON_SYNONYMOUS_CODING CG34292 INTRON Nep5
2L	13632552	2L_13632552_SNP [dm3] 2L_13632552_SNP [dm6]	C	A	2.595e^-4	0.904	DOWNSTREAM CR43410 INTRON kuz
2L	13632565	2L_13632565_SNP [dm3] 2L_13632565_SNP [dm6]	T	C	2.595e^-4	0.904	DOWNSTREAM CR43410 INTRON kuz
2L	13632570	2L_13632570_SNP [dm3] 2L_13632570_SNP [dm6]	C	G	2.595e^-4	0.904	DOWNSTREAM CR43410 INTRON kuz
2L	515314	2L_515314_SNP [dm3] 2L_515314_SNP [dm6]	C	T	2.609e^-4	0.904	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6616113	2R_6616113_SNP [dm3] 2R_10728608_SNP [dm6]	T	G	2.610e^-4	0.904	UTR_5_PRIME Rab3 DOWNSTREAM CG12338
X	21059822	X_21059822_SNP [dm3] X_21188795_SNP [dm6]	C	T	2.617e^-4	0.904	DOWNSTREAM CR45506 INTERGENIC
2R	7587104	2R_7587104_SNP [dm3] 2R_11699599_SNP [dm6]	T	C	2.628e^-4	0.904	EXON Ir48a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16433688	3L_16433688_SNP [dm3] 3L_16440588_SNP [dm6]	A	G	2.636e^-4	0.904	INTRON CG33158 & 1 other
2L	8565970	2L_8565970_SNP [dm3] 2L_8565970_SNP [dm6]	C	A	2.650e^-4	0.904	INTRON Sema-1a
3L	18142795	3L_18142795_SNP [dm3] 3L_18149695_SNP [dm6]	T	G	2.651e^-4	0.904	INTRON CG7330
2L	1973786	2L_1973786_SNP [dm3] 2L_1973786_SNP [dm6]	T	C	2.663e^-4	0.904	UPSTREAM Der-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	1973962	2L_1973962_SNP [dm3] 2L_1973962_SNP [dm6]	A	G	2.663e^-4	0.904	UTR_5_PRIME Der-1 UPSTREAM Der-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	1753332	2R_1753332_SNP [dm3] 2R_5865827_SNP [dm6]	A	T	2.666e^-4	0.904	INTERGENIC
2R	8452152	2R_8452152_SNP [dm3] 2R_12564647_SNP [dm6]	T	C	2.679e^-4	0.904	DOWNSTREAM fra INTRON CG33775
X	14243625	X_14243625_SNP [dm3] X_14349592_SNP [dm6]	A	G	2.706e^-4	0.904	INTRON dpr8
3L	13709136	3L_13709136_INS [dm3] 3L_13716036_INS [dm6]	A	AA	2.716e^-4	0.904	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	18359816	X_18359816_SNP [dm3] X_18465783_SNP [dm6]	C	T	2.720e^-4	0.904	INTRON CG32547	TF binding site mE1_TFBS_chinmo
3L	8203273	3L_8203273_SNP [dm3] 3L_8210173_SNP [dm6]	T	C	2.721e^-4	0.904	SYNONYMOUS_CODING CG32364
2R	8461591	2R_8461591_SNP [dm3] 2R_12574086_SNP [dm6]	C	T	2.737e^-4	0.904	SYNONYMOUS_CODING ClC-b	TF binding site mE1_TFBS_HSA
3L	13870098	3L_13870098_SNP [dm3] 3L_13876998_SNP [dm6]	A	C	2.754e^-4	0.904	INTRON dysc
X	19611081	X_19611081_SNP [dm3] X_19717048_SNP [dm6]	C	T	2.759e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6435281	2R_6435281_SNP [dm3] 2R_10547776_SNP [dm6]	T	G	2.771e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11413571	3L_11413571_SNP [dm3] 3L_11420471_SNP [dm6]	C	G	2.776e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6045444	3L_6045444_SNP [dm3] 3L_6052344_SNP [dm6]	C	T	2.793e^-4	0.904	UTR_5_PRIME Jon65Aii DOWNSTREAM Jon65Aiii	TF binding site mE1_TFBS_cad
3L	14200694	3L_14200694_SNP [dm3] 3L_14207594_SNP [dm6]	A	C	2.799e^-4	0.904	UTR_5_PRIME nuf INTRON nuf
X	20310273	X_20310273_SNP [dm3] X_20439246_SNP [dm6]	T	A	2.806e^-4	0.904	INTRON CG1695	TF binding site mE1_TFBS_chinmo
3R	11182382	3R_11182382_SNP [dm3] 3R_15356660_SNP [dm6]	A	G	2.818e^-4	0.904	UPSTREAM CG5044 INTRON Atg4b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	6470046	2R_6470046_SNP [dm3] 2R_10582541_SNP [dm6]	C	T	2.828e^-4	0.904	INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	12663948	2R_12663948_MNP [dm3] 2R_16776443_MNP [dm6]	CTT	TGA	2.832e^-4	0.904	DOWNSTREAM Arp53D INTERGENIC
2R	12663971	2R_12663971_SNP [dm3] 2R_16776466_SNP [dm6]	G	A	2.832e^-4	0.904	DOWNSTREAM Arp53D INTERGENIC
2R	12664008	2R_12664008_MNP [dm3] 2R_16776503_MNP [dm6]	AGC	TCT	2.832e^-4	0.904	DOWNSTREAM Arp53D INTERGENIC
2R	12664028	2R_12664028_SNP [dm3] 2R_16776523_SNP [dm6]	A	C	2.832e^-4	0.904	DOWNSTREAM Arp53D INTERGENIC
2R	12664030	2R_12664030_SNP [dm3] 2R_16776525_SNP [dm6]	T	C	2.832e^-4	0.904	DOWNSTREAM Arp53D INTERGENIC
2R	10643887	2R_10643887_SNP [dm3] 2R_14756382_SNP [dm6]	G	A	2.846e^-4	0.904	UPSTREAM CG12859 & 1 other DOWNSTREAM Trs31 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	11673224	2R_11673224_SNP [dm3] 2R_15785719_SNP [dm6]	C	T	2.851e^-4	0.904	INTRON Zasp52	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	1980900	2L_1980900_SNP [dm3] 2L_1980900_SNP [dm6]	A	G	2.861e^-4	0.904	UPSTREAM CG15362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11306074	3R_11306074_SNP [dm3] 3R_15480352_SNP [dm6]	T	G	2.863e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14611456	2L_14611456_SNP [dm3] 2L_14611456_SNP [dm6]	C	T	2.867e^-4	0.904	INTRON osp	regulatory region REDfly_CRMs
4	593763	4_593763_SNP [dm3] 4_573137_SNP [dm6]	G	C	2.871e^-4	0.904	INTRON Ephrin	TF binding site BDTNP1_TFBS_dl
3L	13824274	3L_13824274_SNP [dm3] 3L_13831174_SNP [dm6]	T	A	2.889e^-4	0.904	INTERGENIC
2L	17521767	2L_17521767_SNP [dm3] 2L_17521767_SNP [dm6]	G	C	2.892e^-4	0.904	SYNONYMOUS_CODING CG15143 INTRON Dhc36C
3R	22188288	3R_22188288_SNP [dm3] 3R_26362566_SNP [dm6]	A	T	2.910e^-4	0.904	UTR_3_PRIME CG33970 DOWNSTREAM CG33970
3R	22188307	3R_22188307_SNP [dm3] 3R_26362585_SNP [dm6]	C	G	2.910e^-4	0.904	UTR_3_PRIME CG33970 DOWNSTREAM CG33970
3R	22188315	3R_22188315_SNP [dm3] 3R_26362593_SNP [dm6]	T	C	2.910e^-4	0.904	DOWNSTREAM CG33970 INTERGENIC
3L	10049750	3L_10049750_SNP [dm3] 3L_10056650_SNP [dm6]	T	G	2.930e^-4	0.904	INTRON dpr6
2R	19406879	2R_19406879_SNP [dm3] 2R_23519356_SNP [dm6]	G	A	2.949e^-4	0.904	DOWNSTREAM RabX1 INTERGENIC
2L	1973910	2L_1973910_SNP [dm3] 2L_1973910_SNP [dm6]	G	A	2.960e^-4	0.904	UPSTREAM Der-1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12663961	2R_12663961_SNP [dm3] 2R_16776456_SNP [dm6]	A	G	2.968e^-4	0.904	DOWNSTREAM Arp53D INTERGENIC
2R	12663964	2R_12663964_SNP [dm3] 2R_16776459_SNP [dm6]	G	T	2.968e^-4	0.904	DOWNSTREAM Arp53D INTERGENIC
2R	12664000	2R_12664000_SNP [dm3] 2R_16776495_SNP [dm6]	G	A	2.968e^-4	0.904	DOWNSTREAM Arp53D INTERGENIC
X	13438132	X_13438132_INS [dm3] X_13544099_INS [dm6]	A	AA	2.981e^-4	0.904	INTRON Cpr12A
X	13438136	X_13438136_INS [dm3] X_13544103_INS [dm6]	C	CTTATC	2.981e^-4	0.904	INTRON Cpr12A
X	13438160	X_13438160_SNP [dm3] X_13544127_SNP [dm6]	A	G	2.981e^-4	0.904	INTRON Cpr12A
3L	2790521	3L_2790521_SNP [dm3] 3L_2790521_SNP [dm6]	C	T	2.989e^-4	0.904	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5304860	3L_5304860_SNP [dm3] 3L_5311760_SNP [dm6]	C	T	3.005e^-4	0.904	INTERGENIC
3R	11596873	3R_11596873_SNP [dm3] 3R_15771151_SNP [dm6]	T	A	3.018e^-4	0.904	INTERGENIC	transposable element FlyBase
2R	16530573	2R_16530573_SNP [dm3] 2R_20643068_SNP [dm6]	G	T	3.030e^-4	0.904	NON_SYNONYMOUS_CODING CG33786 UTR_3_PRIME CG33785 UPSTREAM DMAP1 DOWNSTREAM CG11110	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	884322	3L_884322_SNP [dm3] 3L_884322_SNP [dm6]	C	T	3.041e^-4	0.904	INTRON CG32479
3L	3259075	3L_3259075_SNP [dm3] 3L_3259075_SNP [dm6]	A	G	3.044e^-4	0.904	INTRON ckd
3R	1670987	3R_1670987_SNP [dm3] 3R_5845265_SNP [dm6]	T	C	3.046e^-4	0.904	SYNONYMOUS_CODING CG1213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22188355	3R_22188355_SNP [dm3] 3R_26362633_SNP [dm6]	G	A	3.061e^-4	0.904	DOWNSTREAM CG33970 INTERGENIC
2L	12180125	2L_12180125_SNP [dm3] 2L_12180125_SNP [dm6]	G	T	3.064e^-4	0.904	INTRON aret
2L	12180126	2L_12180126_SNP [dm3] 2L_12180126_SNP [dm6]	C	A	3.064e^-4	0.904	INTRON aret
3R	13027799	3R_13027799_SNP [dm3] 3R_17202077_SNP [dm6]	A	G	3.064e^-4	0.904	UTR_5_PRIME Mur89F
3L	10138635	3L_10138635_SNP [dm3] 3L_10145535_SNP [dm6]	C	A	3.079e^-4	0.904	INTERGENIC
2R	6435249	2R_6435249_SNP [dm3] 2R_10547744_SNP [dm6]	G	C	3.092e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13010177	3R_13010177_SNP [dm3] 3R_17184455_SNP [dm6]	C	A	3.093e^-4	0.904	INTRON Mur89F
X	19029393	X_19029393_SNP [dm3] X_19135360_SNP [dm6]	G	T	3.113e^-4	0.904	UTR_3_PRIME Obp18a DOWNSTREAM RhoGAP18B
2R	1753105	2R_1753105_SNP [dm3] 2R_5865600_SNP [dm6]	C	T	3.116e^-4	0.904	INTERGENIC
2L	8567838	2L_8567838_SNP [dm3] 2L_8567838_SNP [dm6]	T	C	3.117e^-4	0.904	INTRON Sema-1a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8567861	2L_8567861_SNP [dm3] 2L_8567861_SNP [dm6]	T	C	3.117e^-4	0.904	INTRON Sema-1a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7043187	3L_7043187_SNP [dm3] 3L_7050087_SNP [dm6]	C	T	3.151e^-4	0.904	INTRON Mp
2R	21087401	2R_21087401_SNP [dm3] 2R_25199878_SNP [dm6]	A	T	3.151e^-4	0.904	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16640072	2R_16640072_SNP [dm3] 2R_20752567_SNP [dm6]	C	A	3.177e^-4	0.904	UPSTREAM CG34202 DOWNSTREAM CG34201 INTERGENIC
X	19282276	X_19282276_SNP [dm3] X_19388243_SNP [dm6]	A	C	3.189e^-4	0.904	INTRON kek5
X	5890586	X_5890586_SNP [dm3] X_5996553_SNP [dm6]	G	A	3.190e^-4	0.904	DOWNSTREAM CG4766 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13709131	3L_13709131_SNP [dm3] 3L_13716031_SNP [dm6]	G	A	3.201e^-4	0.904	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
4	522388	4_522388_SNP [dm3] 4_501762_SNP [dm6]	G	T	3.219e^-4	0.904	UPSTREAM zfh2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2R	6435259	2R_6435259_SNP [dm3] 2R_10547754_SNP [dm6]	C	T	3.252e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6435265	2R_6435265_SNP [dm3] 2R_10547760_SNP [dm6]	A	C	3.252e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8413214	3L_8413214_SNP [dm3] 3L_8420114_SNP [dm6]	A	G	3.294e^-4	0.904	INTRON CG32354
X	20275953	X_20275953_SNP [dm3] X_20404926_SNP [dm6]	A	G	3.301e^-4	0.904	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6435261	2R_6435261_DEL [dm3] 2R_10547756_DEL [dm6]	TT	T	3.308e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	3741268	X_3741268_SNP [dm3] X_3847235_SNP [dm6]	C	T	3.341e^-4	0.904	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
X	7326249	X_7326249_SNP [dm3] X_7432216_SNP [dm6]	A	G	3.341e^-4	0.904	INTERGENIC
X	15795621	X_15795621_SNP [dm3] X_15901588_SNP [dm6]	G	A	3.352e^-4	0.904	SYNONYMOUS_CODING shi
X	2484523	X_2484523_SNP [dm3] X_2590490_SNP [dm6]	C	A	3.353e^-4	0.904	INTRON egh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1973806	2L_1973806_SNP [dm3] 2L_1973806_SNP [dm6]	A	C	3.396e^-4	0.904	UPSTREAM Der-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	2512484	X_2512484_SNP [dm3] X_2618451_SNP [dm6]	C	T	3.397e^-4	0.904	SYNONYMOUS_CODING Tsp3A
3L	7027353	3L_7027353_SNP [dm3] 3L_7034253_SNP [dm6]	T	A	3.411e^-4	0.904	INTRON Mp
2R	17980298	2R_17980298_SNP [dm3] 2R_22092793_SNP [dm6]	T	G	3.428e^-4	0.904	NON_SYNONYMOUS_CODING CG11073 INTRON CG11073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16912168	2L_16912168_SNP [dm3] 2L_16912168_SNP [dm6]	C	G	3.430e^-4	0.904	SYNONYMOUS_CODING tweek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8985436	3L_8985436_SNP [dm3] 3L_8992336_SNP [dm6]	A	C	3.438e^-4	0.904	SYNONYMOUS_CODING smg INTRON smg	TF binding site mE1_TFBS_chinmo
2L	13682736	2L_13682736_SNP [dm3] 2L_13682736_SNP [dm6]	T	A	3.468e^-4	0.904	INTRON CG31814
X	8560273	X_8560273_SNP [dm3] X_8666240_SNP [dm6]	C	T	3.471e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11304005	3R_11304005_SNP [dm3] 3R_15478283_SNP [dm6]	T	C	3.485e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9566755	3L_9566755_SNP [dm3] 3L_9573655_SNP [dm6]	G	A	3.497e^-4	0.904	INTRON CG42673
3L	9760455	3L_9760455_DEL [dm3] 3L_9767355_DEL [dm6]	ATAATTAAA	A	3.527e^-4	0.904	INTRON CG8177
3R	22188350	3R_22188350_SNP [dm3] 3R_26362628_SNP [dm6]	C	A	3.528e^-4	0.904	DOWNSTREAM CG33970 INTERGENIC
3L	18814101	3L_18814101_SNP [dm3] 3L_18821001_SNP [dm6]	A	G	3.531e^-4	0.904	UPSTREAM HipHop & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18814105	3L_18814105_SNP [dm3] 3L_18821005_SNP [dm6]	A	G	3.531e^-4	0.904	UPSTREAM HipHop & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11596862	3R_11596862_DEL [dm3] 3R_15771140_DEL [dm6]	CAT	A	3.531e^-4	0.904	INTERGENIC	transposable element FlyBase
3R	11596895	3R_11596895_SNP [dm3] 3R_15771173_SNP [dm6]	C	T	3.531e^-4	0.904	INTERGENIC	transposable element FlyBase
3R	11596924	3R_11596924_SNP [dm3] 3R_15771202_SNP [dm6]	C	G	3.531e^-4	0.904	INTERGENIC	transposable element FlyBase
3R	11596932	3R_11596932_SNP [dm3] 3R_15771210_SNP [dm6]	A	G	3.531e^-4	0.904	INTERGENIC	transposable element FlyBase
3R	11596937	3R_11596937_SNP [dm3] 3R_15771215_SNP [dm6]	C	A	3.531e^-4	0.904	INTERGENIC	transposable element FlyBase
2L	4261941	2L_4261941_SNP [dm3] 2L_4261941_SNP [dm6]	A	C	3.535e^-4	0.904	UPSTREAM CR44080 INTERGENIC
2L	4261948	2L_4261948_SNP [dm3] 2L_4261948_SNP [dm6]	G	A	3.535e^-4	0.904	UPSTREAM CR44080 INTERGENIC
3R	19136999	3R_19136999_SNP [dm3] 3R_23311277_SNP [dm6]	C	G	3.535e^-4	0.904	INTRON pnt
2R	8486484	2R_8486484_SNP [dm3] 2R_12598979_SNP [dm6]	A	G	3.539e^-4	0.904	INTRON Amph
2R	5708223	2R_5708223_SNP [dm3] 2R_9820718_SNP [dm6]	T	A	3.549e^-4	0.904	UPSTREAM CG1648 DOWNSTREAM CG30001 INTRON CG34033	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	10265506	2R_10265506_SNP [dm3] 2R_14378001_SNP [dm6]	A	T	3.551e^-4	0.904	UPSTREAM Dh44-R1 INTERGENIC
3R	12746766	3R_12746766_SNP [dm3] 3R_16921044_SNP [dm6]	G	C	3.553e^-4	0.904	INTRON iab-8	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	17446758	2R_17446758_SNP [dm3] 2R_21559253_SNP [dm6]	C	A	3.588e^-4	0.904	UTR_3_PRIME Egfr DOWNSTREAM CG10440	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	15190005	3R_15190005_SNP [dm3] 3R_19364283_SNP [dm6]	A	G	3.606e^-4	0.904	INTERGENIC
3R	1670315	3R_1670315_SNP [dm3] 3R_5844593_SNP [dm6]	T	A	3.606e^-4	0.904	NON_SYNONYMOUS_CODING CG1213
2R	21084839	2R_21084839_SNP [dm3] 2R_25197316_SNP [dm6]	C	G	3.608e^-4	0.904	INTRON CG9380	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	10946694	2L_10946694_INS [dm3] 2L_10946694_INS [dm6]	G	GATTGG	3.611e^-4	0.904	INTRON dpr2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10572205	X_10572205_SNP [dm3] X_10678172_SNP [dm6]	A	C	3.615e^-4	0.904	INTRON X11Lbeta
X	3460919	X_3460919_SNP [dm3] X_3566886_SNP [dm6]	G	T	3.616e^-4	0.904	INTRON CG32791 & 1 other
2R	7426067	2R_7426067_SNP [dm3] 2R_11538562_SNP [dm6]	C	A	3.618e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_chinmo
X	10572222	X_10572222_SNP [dm3] X_10678189_SNP [dm6]	G	C	3.623e^-4	0.904	INTRON X11Lbeta
3R	11133754	3R_11133754_SNP [dm3] 3R_15308032_SNP [dm6]	C	T	3.627e^-4	0.904	SPLICE_SITE_REGION Tm1 SYNONYMOUS_CODING Tm1 UTR_3_PRIME Tm1 DOWNSTREAM Tm1
3L	10138631	3L_10138631_SNP [dm3] 3L_10145531_SNP [dm6]	A	G	3.650e^-4	0.904	INTERGENIC
2L	5858023	2L_5858023_SNP [dm3] 2L_5858023_SNP [dm6]	G	A	3.660e^-4	0.904	INTERGENIC
3L	2975441	3L_2975441_SNP [dm3] 3L_2975441_SNP [dm6]	A	G	3.660e^-4	0.904	DOWNSTREAM CR44530 INTERGENIC
2L	2673261	2L_2673261_SNP [dm3] 2L_2673261_SNP [dm6]	A	T	3.673e^-4	0.904	INTERGENIC
3R	12746372	3R_12746372_SNP [dm3] 3R_16920650_SNP [dm6]	G	A	3.678e^-4	0.904	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16968941	3L_16968941_SNP [dm3] 3L_16975841_SNP [dm6]	A	G	3.685e^-4	0.904	UPSTREAM Exn INTRON Exn
3R	13936609	3R_13936609_SNP [dm3] 3R_18110887_SNP [dm6]	G	A	3.690e^-4	0.904	INTRON sr
3R	20913179	3R_20913179_SNP [dm3] 3R_25087457_SNP [dm6]	A	T	3.694e^-4	0.904	INTERGENIC	transposable element FlyBase
3L	2915181	3L_2915181_SNP [dm3] 3L_2915181_SNP [dm6]	G	C	3.709e^-4	0.904	NON_SYNONYMOUS_CODING CG9970 INTRON Shab	TF binding site mE1_TFBS_chinmo
X	19282442	X_19282442_SNP [dm3] X_19388409_SNP [dm6]	G	A	3.720e^-4	0.904	INTRON kek5
3L	349944	3L_349944_SNP [dm3] 3L_349944_SNP [dm6]	A	T	3.720e^-4	0.904	INTRON Ptpmeg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	876970	3L_876970_SNP [dm3] 3L_876970_SNP [dm6]	C	T	3.745e^-4	0.904	DOWNSTREAM CG13907 INTRON CG32479	TF binding site mE1_TFBS_sens
2L	16309352	2L_16309352_SNP [dm3] 2L_16309352_SNP [dm6]	A	G	3.757e^-4	0.904	UTR_3_PRIME cni DOWNSTREAM cni & 1 other
X	2468384	X_2468384_SNP [dm3] X_2574351_SNP [dm6]	A	C	3.769e^-4	0.904	INTRON Pdfr
3L	18143943	3L_18143943_SNP [dm3] 3L_18150843_SNP [dm6]	T	C	3.773e^-4	0.904	SYNONYMOUS_CODING CG7330
2L	8167200	2L_8167200_DEL [dm3] 2L_8167200_DEL [dm6]	TAAAACATTTTAATCGAGTT...	T	3.775e^-4	0.904	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	877219	3L_877219_SNP [dm3] 3L_877219_SNP [dm6]	G	T	3.784e^-4	0.904	DOWNSTREAM CG13907 INTRON CG32479
2L	1974066	2L_1974066_SNP [dm3] 2L_1974066_SNP [dm6]	C	A	3.792e^-4	0.904	UTR_5_PRIME Der-1 UPSTREAM Der-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14686201	3R_14686201_SNP [dm3] 3R_18860479_SNP [dm6]	G	A	3.802e^-4	0.904	INTERGENIC
3L	17169291	3L_17169291_INS [dm3] 3L_17176191_INS [dm6]	G	GGCAA	3.810e^-4	0.904	INTRON Rbp6
2L	8567840	2L_8567840_SNP [dm3] 2L_8567840_SNP [dm6]	A	C	3.834e^-4	0.904	INTRON Sema-1a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19159450	X_19159450_SNP [dm3] X_19265417_SNP [dm6]	G	A	3.844e^-4	0.904	INTRON Vav	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5145789	3R_5145789_SNP [dm3] 3R_9320067_SNP [dm6]	G	A	3.852e^-4	0.904	INTRON CG8861
X	19282394	X_19282394_SNP [dm3] X_19388361_SNP [dm6]	A	T	3.860e^-4	0.904	INTRON kek5
2R	6288263	2R_6288263_SNP [dm3] 2R_10400758_SNP [dm6]	A	G	3.862e^-4	0.904	INTRON CG42732
X	8834767	X_8834767_SNP [dm3] X_8940734_SNP [dm6]	C	T	3.872e^-4	0.904	INTRON rdgA
2R	13088034	2R_13088034_SNP [dm3] 2R_17200529_SNP [dm6]	G	T	3.885e^-4	0.904	INTERGENIC
2L	3066934	2L_3066934_SNP [dm3] 2L_3066934_SNP [dm6]	T	C	3.893e^-4	0.904	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12956890	2R_12956890_SNP [dm3] 2R_17069385_SNP [dm6]	G	A	3.904e^-4	0.904	SYNONYMOUS_CODING CG30460 INTRON CG30460	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19374046	X_19374046_DEL [dm3] X_19480013_DEL [dm6]	TA	T	3.908e^-4	0.904	UTR_5_PRIME mRpS14 & 1 other UPSTREAM Nat1 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	15841805	2R_15841805_SNP [dm3] 2R_19954300_SNP [dm6]	C	A	3.912e^-4	0.904	NON_SYNONYMOUS_CODING CG44622
2R	702894	2R_702894_SNP [dm3] 2R_4815389_SNP [dm6]	G	A	3.912e^-4	0.904	DOWNSTREAM CG17528 INTERGENIC
2L	11486051	2L_11486051_SNP [dm3] 2L_11486051_SNP [dm6]	G	T	3.916e^-4	0.904	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20823644	X_20823644_DEL [dm3] X_20952617_DEL [dm6]	CGCC	C	3.917e^-4	0.904	INTERGENIC
X	3462497	X_3462497_SNP [dm3] X_3568464_SNP [dm6]	C	T	3.947e^-4	0.904	UTR_5_PRIME CG32791 INTRON ppk8
3L	1705638	3L_1705638_INS [dm3] 3L_1705638_INS [dm6]	C	CC	3.970e^-4	0.904	INTRON CG7991	TF binding site mE1_TFBS_HSA
3L	15965569	3L_15965569_SNP [dm3] 3L_15972469_SNP [dm6]	A	G	3.974e^-4	0.904	SYNONYMOUS_CODING brm	TF binding site mE1_TFBS_HSA
3L	18190066	3L_18190066_SNP [dm3] 3L_18196966_SNP [dm6]	G	T	3.978e^-4	0.904	DOWNSTREAM CR45234 INTERGENIC
2L	10266348	2L_10266348_SNP [dm3] 2L_10266348_SNP [dm6]	T	A	3.978e^-4	0.904	UPSTREAM CG4953 INTRON Mob3
X	7326153	X_7326153_SNP [dm3] X_7432120_SNP [dm6]	T	A	3.979e^-4	0.904	INTERGENIC
X	4005544	X_4005544_SNP [dm3] X_4111511_SNP [dm6]	G	T	3.987e^-4	0.904	SYNONYMOUS_CODING Nsun2 DOWNSTREAM cib	TF binding site mE1_TFBS_sens
X	13438182	X_13438182_SNP [dm3] X_13544149_SNP [dm6]	A	T	4.009e^-4	0.904	INTRON Cpr12A
3R	14211159	3R_14211159_SNP [dm3] 3R_18385437_SNP [dm6]	T	A	4.025e^-4	0.904	UPSTREAM cona & 1 other INTERGENIC
2L	2673268	2L_2673268_SNP [dm3] 2L_2673268_SNP [dm6]	A	G	4.033e^-4	0.904	INTERGENIC
X	18360750	X_18360750_SNP [dm3] X_18466717_SNP [dm6]	T	C	4.056e^-4	0.904	INTRON CG32547
2R	18889282	2R_18889282_SNP [dm3] 2R_23001759_SNP [dm6]	A	T	4.064e^-4	0.904	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
X	19616204	X_19616204_SNP [dm3] X_19722171_SNP [dm6]	A	G	4.074e^-4	0.904	INTRON CG12531
3L	13870018	3L_13870018_SNP [dm3] 3L_13876918_SNP [dm6]	A	G	4.087e^-4	0.904	INTRON dysc
3L	13870094	3L_13870094_SNP [dm3] 3L_13876994_SNP [dm6]	C	A	4.087e^-4	0.904	INTRON dysc
3L	11957569	3L_11957569_SNP [dm3] 3L_11964469_SNP [dm6]	A	T	4.102e^-4	0.904	SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
2L	15648162	2L_15648162_SNP [dm3] 2L_15648162_SNP [dm6]	T	C	4.115e^-4	0.904	SYNONYMOUS_CODING CG4587
2L	4165600	2L_4165600_SNP [dm3] 2L_4165600_SNP [dm6]	T	C	4.116e^-4	0.904	INTRON Or24a
2R	10806836	2R_10806836_SNP [dm3] 2R_14919331_SNP [dm6]	A	C	4.116e^-4	0.904	INTRON CG10249	TF binding site mE1_TFBS_cnc
2R	11796133	2R_11796133_SNP [dm3] 2R_15908628_SNP [dm6]	T	C	4.120e^-4	0.904	INTRON sli	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1438739	3L_1438739_SNP [dm3] 3L_1438739_SNP [dm6]	A	G	4.125e^-4	0.904	UPSTREAM SA-2 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	1021615	3L_1021615_SNP [dm3] 3L_1021615_SNP [dm6]	T	A	4.127e^-4	0.904	INTRON trio
2L	8204676	2L_8204676_SNP [dm3] 2L_8204676_SNP [dm6]	A	G	4.138e^-4	0.904	DOWNSTREAM CR44120 INTRON SLC5A11 EXON CR44119
3L	2688839	3L_2688839_SNP [dm3] 3L_2688839_SNP [dm6]	C	T	4.140e^-4	0.904	INTRON Fife
X	10572229	X_10572229_SNP [dm3] X_10678196_SNP [dm6]	G	A	4.152e^-4	0.904	INTRON X11Lbeta
2R	11112440	2R_11112440_SNP [dm3] 2R_15224935_SNP [dm6]	C	A	4.158e^-4	0.904	DOWNSTREAM CG8079 INTRON Fs
2R	11112515	2R_11112515_SNP [dm3] 2R_15225010_SNP [dm6]	A	G	4.158e^-4	0.904	DOWNSTREAM CG8079 INTRON Fs
2L	13305435	2L_13305435_SNP [dm3] 2L_13305435_SNP [dm6]	G	A	4.160e^-4	0.904	SYNONYMOUS_CODING CG43778 UTR_5_PRIME CG16825 UPSTREAM CG16825 DOWNSTREAM CG43779	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13305444	2L_13305444_SNP [dm3] 2L_13305444_SNP [dm6]	T	C	4.160e^-4	0.904	SYNONYMOUS_CODING CG43778 UTR_5_PRIME CG16825 UPSTREAM CG16825 DOWNSTREAM CG43779	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9921507	2L_9921507_SNP [dm3] 2L_9921507_SNP [dm6]	C	A	4.161e^-4	0.904	UPSTREAM CG4592 DOWNSTREAM CG4594 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	1973891	2L_1973891_SNP [dm3] 2L_1973891_SNP [dm6]	T	C	4.166e^-4	0.904	UPSTREAM Der-1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	7084883	3L_7084883_SNP [dm3] 3L_7091783_SNP [dm6]	C	T	4.168e^-4	0.904	INTERGENIC
2L	16828016	2L_16828016_SNP [dm3] 2L_16828016_SNP [dm6]	T	G	4.176e^-4	0.904	INTRON CG31739	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22878840	3R_22878840_SNP [dm3] 3R_27053118_SNP [dm6]	C	A	4.190e^-4	0.904	INTRON RYa-R
3R	22878841	3R_22878841_SNP [dm3] 3R_27053119_SNP [dm6]	C	A	4.190e^-4	0.904	INTRON RYa-R
3R	19041000	3R_19041000_SNP [dm3] 3R_23215278_SNP [dm6]	G	A	4.192e^-4	0.904	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	19041008	3R_19041008_SNP [dm3] 3R_23215286_SNP [dm6]	T	C	4.192e^-4	0.904	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
X	6353139	X_6353139_SNP [dm3] X_6459106_SNP [dm6]	T	C	4.197e^-4	0.904	INTRON CG42340
3R	19040151	3R_19040151_SNP [dm3] 3R_23214429_SNP [dm6]	A	T	4.211e^-4	0.904	SYNONYMOUS_CODING cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	6235808	2L_6235808_DEL [dm3] 2L_6235808_DEL [dm6]	AACTGAAAAA	G	4.214e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
2L	1973807	2L_1973807_SNP [dm3] 2L_1973807_SNP [dm6]	C	A	4.226e^-4	0.904	UPSTREAM Der-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19284437	2R_19284437_SNP [dm3] 2R_23396914_SNP [dm6]	G	C	4.229e^-4	0.904	UTR_3_PRIME CG3520 UPSTREAM CG3530	TF binding site mE1_TFBS_sens
3R	26075141	3R_26075141_SNP [dm3] 3R_30249419_SNP [dm6]	A	G	4.235e^-4	0.904	UPSTREAM CG34299 & 1 other INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_sens
X	10059204	X_10059204_SNP [dm3] X_10165171_SNP [dm6]	A	C	4.245e^-4	0.904	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_chinmo
2L	14164295	2L_14164295_SNP [dm3] 2L_14164295_SNP [dm6]	C	T	4.248e^-4	0.904	INTRON CG43333
2R	10642681	2R_10642681_SNP [dm3] 2R_14755176_SNP [dm6]	G	A	4.261e^-4	0.904	SYNONYMOUS_CODING CG10151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	6416994	2L_6416994_SNP [dm3] 2L_6416994_SNP [dm6]	A	G	4.273e^-4	0.904	SYNONYMOUS_CODING Tig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16847393	2R_16847393_SNP [dm3] 2R_20959888_SNP [dm6]	G	A	4.304e^-4	0.904	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4082513	2L_4082513_SNP [dm3] 2L_4082513_SNP [dm6]	A	G	4.308e^-4	0.904	INTRON ed
2L	12180109	2L_12180109_SNP [dm3] 2L_12180109_SNP [dm6]	G	A	4.314e^-4	0.904	INTRON aret
2L	12180110	2L_12180110_SNP [dm3] 2L_12180110_SNP [dm6]	T	C	4.314e^-4	0.904	INTRON aret
2L	12180117	2L_12180117_SNP [dm3] 2L_12180117_SNP [dm6]	A	T	4.314e^-4	0.904	INTRON aret
X	14787007	X_14787007_SNP [dm3] X_14892974_SNP [dm6]	T	A	4.328e^-4	0.904	INTRON Flo2 & 1 other
3L	13869935	3L_13869935_SNP [dm3] 3L_13876835_SNP [dm6]	A	T	4.353e^-4	0.904	INTRON dysc
3L	13869941	3L_13869941_SNP [dm3] 3L_13876841_SNP [dm6]	G	A	4.353e^-4	0.904	INTRON dysc
2R	8451642	2R_8451642_SNP [dm3] 2R_12564137_SNP [dm6]	T	C	4.384e^-4	0.904	UTR_3_PRIME fra DOWNSTREAM CG33775
3L	6817615	3L_6817615_SNP [dm3] 3L_6824515_SNP [dm6]	T	C	4.386e^-4	0.904	INTERGENIC	regulatory region REDfly_CRMs
2L	3457390	2L_3457390_SNP [dm3] 2L_3457390_SNP [dm6]	C	G	4.392e^-4	0.904	UTR_5_PRIME Sec5 UPSTREAM Cog3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11447595	3L_11447595_SNP [dm3] 3L_11454495_SNP [dm6]	T	C	4.399e^-4	0.904	INTERGENIC
3L	6047659	3L_6047659_SNP [dm3] 3L_6054559_SNP [dm6]	G	A	4.399e^-4	0.904	UPSTREAM tan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3R	19041050	3R_19041050_SNP [dm3] 3R_23215328_SNP [dm6]	G	T	4.402e^-4	0.904	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	16972313	3L_16972313_SNP [dm3] 3L_16979213_SNP [dm6]	A	G	4.406e^-4	0.904	INTRON Exn
2R	4747543	2R_4747543_SNP [dm3] 2R_8860038_SNP [dm6]	T	C	4.408e^-4	0.904	UPSTREAM RyR INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb mE1_TFBS_Trl
2R	16881321	2R_16881321_SNP [dm3] 2R_20993816_SNP [dm6]	A	G	4.441e^-4	0.904	NON_SYNONYMOUS_CODING dgt3	TF binding site mE1_TFBS_sens
2R	8451702	2R_8451702_SNP [dm3] 2R_12564197_SNP [dm6]	G	A	4.442e^-4	0.904	DOWNSTREAM CG33775 & 1 other INTERGENIC
X	2470507	X_2470507_SNP [dm3] X_2576474_SNP [dm6]	A	G	4.446e^-4	0.904	UTR_3_PRIME Pdfr INTRON Pdfr
3L	15188189	3L_15188189_SNP [dm3] 3L_15195089_SNP [dm6]	C	T	4.448e^-4	0.904	INTERGENIC
2R	15828564	2R_15828564_SNP [dm3] 2R_19941059_SNP [dm6]	A	G	4.455e^-4	0.904	UPSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17611236	X_17611236_SNP [dm3] X_17717203_SNP [dm6]	T	C	4.470e^-4	0.904	INTRON CG42684
3R	11407887	3R_11407887_SNP [dm3] 3R_15582165_SNP [dm6]	G	A	4.482e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12747775	3R_12747775_SNP [dm3] 3R_16922053_SNP [dm6]	A	G	4.489e^-4	0.904	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	11112460	2R_11112460_INS [dm3] 2R_15224955_INS [dm6]	T	TT	4.540e^-4	0.904	DOWNSTREAM CG8079 INTRON Fs
2L	4192778	2L_4192778_SNP [dm3] 2L_4192778_SNP [dm6]	T	A	4.542e^-4	0.904	NON_SYNONYMOUS_CODING CG3714 INTRON CG3714
2R	8447981	2R_8447981_SNP [dm3] 2R_12560476_SNP [dm6]	G	C	4.565e^-4	0.904	SYNONYMOUS_CODING fra
X	19044387	X_19044387_DEL [dm3] X_19150354_DEL [dm6]	TCCAG	T	4.576e^-4	0.904	INTRON RhoGAP18B
2R	8975642	2R_8975642_SNP [dm3] 2R_13088137_SNP [dm6]	C	G	4.577e^-4	0.904	INTERGENIC
2R	8975661	2R_8975661_SNP [dm3] 2R_13088156_SNP [dm6]	A	G	4.577e^-4	0.904	INTERGENIC
2R	1752922	2R_1752922_SNP [dm3] 2R_5865417_SNP [dm6]	A	G	4.593e^-4	0.904	INTERGENIC
X	5469879	X_5469879_SNP [dm3] X_5575846_SNP [dm6]	C	G	4.598e^-4	0.904	INTERGENIC
2L	4007370	2L_4007370_SNP [dm3] 2L_4007370_SNP [dm6]	T	C	4.609e^-4	0.904	UPSTREAM CG43773 DOWNSTREAM CG15423 INTERGENIC
2R	9645191	2R_9645191_SNP [dm3] 2R_13757686_SNP [dm6]	T	A	4.618e^-4	0.904	NON_SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_sens
2L	6416649	2L_6416649_SNP [dm3] 2L_6416649_SNP [dm6]	A	G	4.619e^-4	0.904	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11427116	3L_11427116_SNP [dm3] 3L_11434016_SNP [dm6]	G	C	4.623e^-4	0.904	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	11427117	3L_11427117_SNP [dm3] 3L_11434017_SNP [dm6]	G	A	4.623e^-4	0.904	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	13950623	2R_13950623_SNP [dm3] 2R_18063118_SNP [dm6]	C	A	4.638e^-4	0.904	INTRON CG34386
2R	13950626	2R_13950626_DEL [dm3] 2R_18063121_DEL [dm6]	GC	A	4.638e^-4	0.904	INTRON CG34386
2R	13950629	2R_13950629_SNP [dm3] 2R_18063124_SNP [dm6]	G	A	4.638e^-4	0.904	INTRON CG34386
2R	13950630	2R_13950630_INS [dm3] 2R_18063125_INS [dm6]	T	TAATATTAATAATAATATTA...	4.638e^-4	0.904	INTRON CG34386
2R	13950636	2R_13950636_SNP [dm3] 2R_18063131_SNP [dm6]	C	A	4.638e^-4	0.904	INTRON CG34386
2R	13950638	2R_13950638_SNP [dm3] 2R_18063133_SNP [dm6]	T	A	4.638e^-4	0.904	INTRON CG34386
2R	13950640	2R_13950640_MNP [dm3] 2R_18063135_MNP [dm6]	CCC	ATA	4.638e^-4	0.904	INTRON CG34386
2R	13950644	2R_13950644_SNP [dm3] 2R_18063139_SNP [dm6]	T	A	4.638e^-4	0.904	INTRON CG34386
2R	13950645	2R_13950645_SNP [dm3] 2R_18063140_SNP [dm6]	C	T	4.638e^-4	0.904	INTRON CG34386
2L	21759578	2L_21759578_SNP [dm3] 2L_21759578_SNP [dm6]	T	C	4.654e^-4	0.904	INTRON CG1416
3L	4636520	3L_4636520_SNP [dm3] 3L_4636520_SNP [dm6]	A	T	4.659e^-4	0.904	DOWNSTREAM axo INTRON axo
3L	3534319	3L_3534319_SNP [dm3] 3L_3534319_SNP [dm6]	C	G	4.663e^-4	0.904	INTRON Eip63E
2L	16910392	2L_16910392_INS [dm3] 2L_16910392_INS [dm6]	A	AA	4.667e^-4	0.904	UTR_5_PRIME ApepP INTRON tweek
3R	22188334	3R_22188334_SNP [dm3] 3R_26362612_SNP [dm6]	A	C	4.669e^-4	0.904	DOWNSTREAM CG33970 INTERGENIC
3R	22188361	3R_22188361_SNP [dm3] 3R_26362639_SNP [dm6]	T	C	4.669e^-4	0.904	DOWNSTREAM CG33970 INTERGENIC
2R	17471750	2R_17471750_SNP [dm3] 2R_21584245_SNP [dm6]	C	G	4.670e^-4	0.904	INTRON CG30222
3L	17626070	3L_17626070_SNP [dm3] 3L_17632970_SNP [dm6]	C	G	4.675e^-4	0.904	UPSTREAM CG7497 DOWNSTREAM CR44567 & 1 other INTERGENIC
3R	18872681	3R_18872681_SNP [dm3] 3R_23046959_SNP [dm6]	G	C	4.681e^-4	0.904	INTRON CG17121
3R	18872757	3R_18872757_SNP [dm3] 3R_23047035_SNP [dm6]	C	T	4.681e^-4	0.904	INTRON CG17121
2R	15284041	2R_15284041_SNP [dm3] 2R_19396536_SNP [dm6]	T	C	4.688e^-4	0.904	SYNONYMOUS_CODING cer UPSTREAM SdhA DOWNSTREAM hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	10944376	3L_10944376_SNP [dm3] 3L_10951276_SNP [dm6]	A	G	4.701e^-4	0.904	INTERGENIC
2L	4265649	2L_4265649_SNP [dm3] 2L_4265649_SNP [dm6]	T	C	4.713e^-4	0.904	INTERGENIC
X	16857465	X_16857465_SNP [dm3] X_16963432_SNP [dm6]	T	C	4.720e^-4	0.904	INTRON CG9086	TF binding site mE1_TFBS_sens
3L	22635625	3L_22635625_SNP [dm3] 3L_22642525_SNP [dm6]	T	C	4.724e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4190158	2L_4190158_SNP [dm3] 2L_4190158_SNP [dm6]	T	C	4.734e^-4	0.904	SYNONYMOUS_CODING CG3714 DOWNSTREAM lectin-24Db	TF binding site mE1_TFBS_cad
2R	5010609	2R_5010609_SNP [dm3] 2R_9123104_SNP [dm6]	T	C	4.737e^-4	0.904	SYNONYMOUS_CODING GstE13 DOWNSTREAM CG18659
X	19451915	X_19451915_INS [dm3] X_19557882_INS [dm6]	C	CGAGGAAGTATTC...	4.745e^-4	0.904	UPSTREAM mir-4966 & 1 other DOWNSTREAM mir-2499 INTERGENIC
2L	9532265	2L_9532265_SNP [dm3] 2L_9532265_SNP [dm6]	C	T	4.746e^-4	0.904	INTRON Oatp30B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16972318	3L_16972318_SNP [dm3] 3L_16979218_SNP [dm6]	A	T	4.765e^-4	0.904	INTRON Exn
3L	873425	3L_873425_SNP [dm3] 3L_873425_SNP [dm6]	A	G	4.768e^-4	0.904	SYNONYMOUS_CODING CG32479	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	9996219	2L_9996219_SNP [dm3] 2L_9996219_SNP [dm6]	A	G	4.778e^-4	0.904	SYNONYMOUS_CODING CG31875 DOWNSTREAM bib & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23114370	3R_23114370_SNP [dm3] 3R_27288648_SNP [dm6]	T	G	4.787e^-4	0.904	UPSTREAM Hmu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	11411809	3L_11411809_INS [dm3] 3L_11418709_INS [dm6]	G	GGGTACATA	4.798e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	11179952	3L_11179952_SNP [dm3] 3L_11186852_SNP [dm6]	T	C	4.802e^-4	0.904	INTRON GlcAT-P
X	7326268	X_7326268_SNP [dm3] X_7432235_SNP [dm6]	G	A	4.812e^-4	0.904	INTERGENIC
3L	6008852	3L_6008852_SNP [dm3] 3L_6015752_SNP [dm6]	A	C	4.815e^-4	0.904	INTRON PVRAP
3L	15937344	3L_15937344_SNP [dm3] 3L_15944244_SNP [dm6]	G	A	4.815e^-4	0.904	INTRON Pka-C3
2L	17430114	2L_17430114_SNP [dm3] 2L_17430114_SNP [dm6]	C	T	4.820e^-4	0.904	INTRON Dif EXON CR44409
3R	22879049	3R_22879049_SNP [dm3] 3R_27053327_SNP [dm6]	C	T	4.842e^-4	0.904	INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15793090	2R_15793090_SNP [dm3] 2R_19905585_SNP [dm6]	C	A	4.844e^-4	0.904	INTERGENIC
2L	6698019	2L_6698019_SNP [dm3] 2L_6698019_SNP [dm6]	G	T	4.867e^-4	0.904	INTRON Tsp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	6698045	2L_6698045_SNP [dm3] 2L_6698045_SNP [dm6]	C	T	4.867e^-4	0.904	INTRON Tsp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16910911	2L_16910911_SNP [dm3] 2L_16910911_SNP [dm6]	T	G	4.882e^-4	0.904	SYNONYMOUS_CODING tweek UPSTREAM ApepP	TF binding site mE1_TFBS_cad
2L	5859937	2L_5859937_SNP [dm3] 2L_5859937_SNP [dm6]	A	G	4.884e^-4	0.904	UTR_3_PRIME rau
2L	5860060	2L_5860060_SNP [dm3] 2L_5860060_SNP [dm6]	C	T	4.884e^-4	0.904	UTR_3_PRIME rau	TF binding site mE1_TFBS_cad
2R	9215803	2R_9215803_SNP [dm3] 2R_13328298_SNP [dm6]	T	G	4.887e^-4	0.904	INTERGENIC
2R	5708216	2R_5708216_SNP [dm3] 2R_9820711_SNP [dm6]	G	A	4.890e^-4	0.904	UPSTREAM CG1648 DOWNSTREAM CG30001 INTRON CG34033	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2882150	2L_2882150_SNP [dm3] 2L_2882150_SNP [dm6]	T	C	4.898e^-4	0.904	SYNONYMOUS_CODING NTPase START_GAINED NTPase UTR_5_PRIME NTPase	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13266966	X_13266966_INS [dm3] X_13372933_INS [dm6]	T	TGTATATATGT...	4.904e^-4	0.904	UPSTREAM CG1640 INTRON CG1640	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8413507	3L_8413507_SNP [dm3] 3L_8420407_SNP [dm6]	T	C	4.912e^-4	0.904	INTRON CG32354
2L	6071725	2L_6071725_SNP [dm3] 2L_6071725_SNP [dm6]	A	G	4.926e^-4	0.904	UPSTREAM Kr-h2 INTRON Kr-h2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	5306245	2R_5306245_SNP [dm3] 2R_9418740_SNP [dm6]	A	C	4.931e^-4	0.904	DOWNSTREAM wun2 INTERGENIC
2R	5306246	2R_5306246_DEL [dm3] 2R_9418741_DEL [dm6]	CACT	C	4.931e^-4	0.904	DOWNSTREAM wun2 INTERGENIC
2L	7210988	2L_7210988_SNP [dm3] 2L_7210988_SNP [dm6]	A	G	4.936e^-4	0.904	INTRON CG13784
2L	910024	2L_910024_SNP [dm3] 2L_910024_SNP [dm6]	T	A	4.963e^-4	0.904	INTERGENIC
2L	910027	2L_910027_SNP [dm3] 2L_910027_SNP [dm6]	A	G	4.963e^-4	0.904	INTERGENIC
2L	910036	2L_910036_INS [dm3] 2L_910036_INS [dm6]	G	GTTG	4.963e^-4	0.904	INTERGENIC
2L	910057	2L_910057_SNP [dm3] 2L_910057_SNP [dm6]	C	G	4.963e^-4	0.904	INTERGENIC
2L	910061	2L_910061_SNP [dm3] 2L_910061_SNP [dm6]	A	G	4.963e^-4	0.904	INTERGENIC
2L	910070	2L_910070_SNP [dm3] 2L_910070_SNP [dm6]	T	G	4.963e^-4	0.904	INTERGENIC
2L	910083	2L_910083_SNP [dm3] 2L_910083_SNP [dm6]	T	C	4.963e^-4	0.904	INTERGENIC
2L	910093	2L_910093_SNP [dm3] 2L_910093_SNP [dm6]	A	T	4.963e^-4	0.904	INTERGENIC
X	7751905	X_7751905_SNP [dm3] X_7857872_SNP [dm6]	C	T	4.964e^-4	0.904	UPSTREAM CG1409 INTERGENIC
2R	16590832	2R_16590832_SNP [dm3] 2R_20703327_SNP [dm6]	A	C	4.971e^-4	0.904	INTRON dpr
2R	19521199	2R_19521199_SNP [dm3] 2R_23633676_SNP [dm6]	T	C	4.979e^-4	0.904	INTRON retn
2R	1762205	2R_1762205_SNP [dm3] 2R_5874700_SNP [dm6]	G	C	4.989e^-4	0.904	INTERGENIC
2R	9397099	2R_9397099_SNP [dm3] 2R_13509594_SNP [dm6]	G	C	4.997e^-4	0.904	UPSTREAM mip120 DOWNSTREAM EfTuM INTRON mip120	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3L	5223962	3L_5223962_SNP [dm3] 3L_5230862_SNP [dm6]	G	C	5.015e^-4	0.904	INTRON shep
2R	9364025	2R_9364025_SNP [dm3] 2R_13476520_SNP [dm6]	G	T	5.020e^-4	0.904	UPSTREAM CG43192 INTRON arr
2R	12274910	2R_12274910_SNP [dm3] 2R_16387405_SNP [dm6]	T	A	5.026e^-4	0.904	INTRON Sema-2b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	13952962	2R_13952962_SNP [dm3] 2R_18065457_SNP [dm6]	T	A	5.035e^-4	0.904	INTRON CG34386
2L	8569649	2L_8569649_SNP [dm3] 2L_8569649_SNP [dm6]	C	T	5.043e^-4	0.904	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7192424	2L_7192424_SNP [dm3] 2L_7192424_SNP [dm6]	G	A	5.045e^-4	0.904	INTRON CG4497	TF binding site mE1_TFBS_inv
2L	7192425	2L_7192425_SNP [dm3] 2L_7192425_SNP [dm6]	G	A	5.045e^-4	0.904	INTRON CG4497	TF binding site mE1_TFBS_inv
3L	10155461	3L_10155461_DEL [dm3] 3L_10162361_DEL [dm6]	GGG	C	5.048e^-4	0.904	INTRON dpr10
X	2472012	X_2472012_SNP [dm3] X_2577979_SNP [dm6]	A	G	5.060e^-4	0.904	UTR_3_PRIME Pdfr DOWNSTREAM Pdfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6740190	2R_6740190_SNP [dm3] 2R_10852685_SNP [dm6]	T	A	5.081e^-4	0.904	UPSTREAM CR45136 INTRON CG30015
2L	5812749	2L_5812749_SNP [dm3] 2L_5812749_SNP [dm6]	C	A	5.092e^-4	0.904	DOWNSTREAM CG43307 INTERGENIC
3R	7310437	3R_7310437_SNP [dm3] 3R_11484715_SNP [dm6]	G	A	5.103e^-4	0.904	INTERGENIC
3L	10049805	3L_10049805_SNP [dm3] 3L_10056705_SNP [dm6]	C	G	5.111e^-4	0.904	INTRON dpr6
3L	18134596	3L_18134596_SNP [dm3] 3L_18141496_SNP [dm6]	A	T	5.112e^-4	0.904	INTRON gk
3L	18134598	3L_18134598_SNP [dm3] 3L_18141498_SNP [dm6]	A	G	5.112e^-4	0.904	INTRON gk
3L	12101398	3L_12101398_INS [dm3] 3L_12108298_INS [dm6]	T	TAGGGAAACCCCGTTTTTAG...	5.127e^-4	0.904	INTERGENIC
2L	4130323	2L_4130323_SNP [dm3] 2L_4130323_SNP [dm6]	G	A	5.150e^-4	0.904	INTERGENIC
X	20827598	X_20827598_SNP [dm3] X_20956571_SNP [dm6]	C	A	5.150e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_inv transposable element FlyBase
X	2512634	X_2512634_SNP [dm3] X_2618601_SNP [dm6]	G	T	5.152e^-4	0.904	SYNONYMOUS_CODING Tsp3A
3R	12745333	3R_12745333_SNP [dm3] 3R_16919611_SNP [dm6]	T	C	5.179e^-4	0.904	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	14428101	3L_14428101_SNP [dm3] 3L_14435001_SNP [dm6]	A	G	5.187e^-4	0.904	INTRON bbg
2R	9338132	2R_9338132_SNP [dm3] 2R_13450627_SNP [dm6]	G	A	5.188e^-4	0.904	UTR_5_PRIME cbs UPSTREAM cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	10766186	3R_10766186_SNP [dm3] 3R_14940464_SNP [dm6]	C	T	5.202e^-4	0.904	INTERGENIC
3L	4076775	3L_4076775_SNP [dm3] 3L_4076775_SNP [dm6]	A	T	5.203e^-4	0.904	INTRON Gad1
3R	6357079	3R_6357079_INS [dm3] 3R_10531357_INS [dm6]	C	CTGGT	5.207e^-4	0.904	INTRON hth
3R	26075497	3R_26075497_MNP [dm3] 3R_30249775_MNP [dm6]	GGA	AAT	5.213e^-4	0.904	NON_SYNONYMOUS_CODING CG34299	TF binding site mE1_TFBS_inv
3L	18720375	3L_18720375_SNP [dm3] 3L_18727275_SNP [dm6]	C	A	5.214e^-4	0.904	INTERGENIC
3L	18720417	3L_18720417_SNP [dm3] 3L_18727317_SNP [dm6]	G	T	5.214e^-4	0.904	INTERGENIC
3L	18720418	3L_18720418_SNP [dm3] 3L_18727318_SNP [dm6]	G	T	5.214e^-4	0.904	INTERGENIC
3L	18720428	3L_18720428_SNP [dm3] 3L_18727328_SNP [dm6]	G	A	5.214e^-4	0.904	INTERGENIC
3R	13298503	3R_13298503_SNP [dm3] 3R_17472781_SNP [dm6]	C	G	5.215e^-4	0.904	INTERGENIC
2R	19079323	2R_19079323_SNP [dm3] 2R_23191800_SNP [dm6]	C	T	5.218e^-4	0.904	INTRON CG34371
X	10969345	X_10969345_SNP [dm3] X_11075312_SNP [dm6]	T	G	5.220e^-4	0.904	SYNONYMOUS_CODING sev	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo
2L	8802826	2L_8802826_SNP [dm3] 2L_8802826_SNP [dm6]	T	C	5.230e^-4	0.904	INTERGENIC
X	20823935	X_20823935_SNP [dm3] X_20952908_SNP [dm6]	C	A	5.234e^-4	0.904	INTERGENIC
X	20824151	X_20824151_SNP [dm3] X_20953124_SNP [dm6]	C	T	5.234e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_HSA
X	20824937	X_20824937_SNP [dm3] X_20953910_SNP [dm6]	T	G	5.234e^-4	0.904	INTERGENIC
X	20824939	X_20824939_SNP [dm3] X_20953912_SNP [dm6]	T	A	5.234e^-4	0.904	INTERGENIC
X	20824941	X_20824941_SNP [dm3] X_20953914_SNP [dm6]	T	G	5.234e^-4	0.904	INTERGENIC
X	20824950	X_20824950_SNP [dm3] X_20953923_SNP [dm6]	C	T	5.234e^-4	0.904	INTERGENIC
3L	11306526	3L_11306526_SNP [dm3] 3L_11313426_SNP [dm6]	T	A	5.240e^-4	0.904	DOWNSTREAM CG7573 INTERGENIC	TF binding site mE1_TFBS_sens
3L	18143306	3L_18143306_SNP [dm3] 3L_18150206_SNP [dm6]	G	C	5.249e^-4	0.904	INTRON CG7330
2L	9996246	2L_9996246_SNP [dm3] 2L_9996246_SNP [dm6]	T	A	5.288e^-4	0.904	SYNONYMOUS_CODING CG31875 DOWNSTREAM bib & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19413960	2L_19413960_SNP [dm3] 2L_19413960_SNP [dm6]	C	T	5.297e^-4	0.904	INTRON Pax	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	6744993	3L_6744993_SNP [dm3] 3L_6751893_SNP [dm6]	T	C	5.298e^-4	0.904	INTRON velo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	16817552	X_16817552_SNP [dm3] X_16923519_SNP [dm6]	A	G	5.299e^-4	0.904	INTRON CG4928
2L	14612486	2L_14612486_SNP [dm3] 2L_14612486_SNP [dm6]	C	T	5.327e^-4	0.904	UPSTREAM CR43411 INTRON osp	regulatory region REDfly_CRMs
2L	514900	2L_514900_SNP [dm3] 2L_514900_SNP [dm6]	T	G	5.331e^-4	0.904	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20888794	3L_20888794_INS [dm3] 3L_20895694_INS [dm6]	T	TCCCTAATGGCGTCTTT...	5.334e^-4	0.904	DOWNSTREAM Sfp77F INTERGENIC
3L	20888812	3L_20888812_SNP [dm3] 3L_20895712_SNP [dm6]	A	T	5.334e^-4	0.904	DOWNSTREAM Sfp77F INTERGENIC
2R	12663952	2R_12663952_SNP [dm3] 2R_16776447_SNP [dm6]	G	A	5.337e^-4	0.904	DOWNSTREAM Arp53D INTERGENIC
3L	20975639	3L_20975639_SNP [dm3] 3L_20982539_SNP [dm6]	C	T	5.339e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22876636	3R_22876636_SNP [dm3] 3R_27050914_SNP [dm6]	C	T	5.347e^-4	0.904	UTR_3_PRIME TwdlT INTRON RYa-R
3R	22876764	3R_22876764_SNP [dm3] 3R_27051042_SNP [dm6]	A	C	5.347e^-4	0.904	DOWNSTREAM TwdlT INTRON RYa-R
3R	22880113	3R_22880113_SNP [dm3] 3R_27054391_SNP [dm6]	A	C	5.347e^-4	0.904	INTRON RYa-R
2L	22957005	2L_22957005_SNP [dm3] 2L_23064273_SNP [dm6]	G	A	5.347e^-4	0.904	INTERGENIC
2R	19510747	2R_19510747_DEL [dm3] 2R_23623224_DEL [dm6]	GC	A	5.353e^-4	0.904	INTERGENIC
2R	18733257	2R_18733257_INS [dm3] 2R_22845734_INS [dm6]	A	AA	5.358e^-4	0.904	UPSTREAM CG3649 INTERGENIC
2R	18754640	2R_18754640_SNP [dm3] 2R_22867117_SNP [dm6]	G	A	5.361e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3395891	2L_3395891_SNP [dm3] 2L_3395891_SNP [dm6]	C	T	5.361e^-4	0.904	INTERGENIC
3L	4120491	3L_4120491_SNP [dm3] 3L_4120491_SNP [dm6]	T	A	5.363e^-4	0.904	INTRON Chd64	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
2L	16912327	2L_16912327_SNP [dm3] 2L_16912327_SNP [dm6]	A	G	5.367e^-4	0.904	SYNONYMOUS_CODING tweek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	22881875	3R_22881875_SNP [dm3] 3R_27056153_SNP [dm6]	G	A	5.382e^-4	0.904	INTRON RYa-R
2L	19899349	2L_19899349_SNP [dm3] 2L_19899349_SNP [dm6]	C	T	5.391e^-4	0.904	INTRON sick
2R	7942392	2R_7942392_SNP [dm3] 2R_12054887_SNP [dm6]	C	A	5.402e^-4	0.904	UPSTREAM Drep-3 DOWNSTREAM CG44314 INTRON CG44314
3R	20200812	3R_20200812_SNP [dm3] 3R_24375090_SNP [dm6]	G	T	5.407e^-4	0.904	INTRON CG17781
X	2470099	X_2470099_SNP [dm3] X_2576066_SNP [dm6]	C	T	5.413e^-4	0.904	INTRON Pdfr
2R	9569922	2R_9569922_SNP [dm3] 2R_13682417_SNP [dm6]	G	T	5.427e^-4	0.904	INTRON fas	TF binding site BDTNP1_TFBS_twi
3R	9493864	3R_9493864_SNP [dm3] 3R_13668142_SNP [dm6]	A	T	5.431e^-4	0.904	UTR_3_PRIME Task6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14612496	2L_14612496_SNP [dm3] 2L_14612496_SNP [dm6]	C	T	5.449e^-4	0.904	UPSTREAM CR43411 INTRON osp	regulatory region REDfly_CRMs
2R	8485685	2R_8485685_SNP [dm3] 2R_12598180_SNP [dm6]	T	G	5.453e^-4	0.904	INTRON Amph
2L	5804592	2L_5804592_SNP [dm3] 2L_5804592_SNP [dm6]	T	A	5.458e^-4	0.904	UPSTREAM CG11034 DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	2475785	X_2475785_SNP [dm3] X_2581752_SNP [dm6]	A	G	5.480e^-4	0.904	UPSTREAM CG13759 INTRON CG13759
3L	7039815	3L_7039815_SNP [dm3] 3L_7046715_SNP [dm6]	G	A	5.480e^-4	0.904	INTRON Mp
X	20824984	X_20824984_SNP [dm3] X_20953957_SNP [dm6]	T	C	5.484e^-4	0.904	INTERGENIC
3L	18142796	3L_18142796_SNP [dm3] 3L_18149696_SNP [dm6]	G	A	5.497e^-4	0.904	INTRON CG7330
X	9533227	X_9533227_SNP [dm3] X_9639194_SNP [dm6]	C	T	5.507e^-4	0.904	UPSTREAM l_1_G0232 INTRON l_1_G0232	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8166491	2L_8166491_SNP [dm3] 2L_8166491_SNP [dm6]	G	A	5.525e^-4	0.904	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	4636119	3L_4636119_SNP [dm3] 3L_4636119_SNP [dm6]	A	G	5.527e^-4	0.904	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
2R	13812346	2R_13812346_SNP [dm3] 2R_17924841_SNP [dm6]	T	G	5.531e^-4	0.904	SYNONYMOUS_CODING Elk
2R	10642711	2R_10642711_SNP [dm3] 2R_14755206_SNP [dm6]	A	G	5.532e^-4	0.904	SYNONYMOUS_CODING CG10151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	15115939	2L_15115939_SNP [dm3] 2L_15115939_SNP [dm6]	T	A	5.537e^-4	0.904	INTRON stc	TF binding site mE1_TFBS_chinmo
3L	877232	3L_877232_SNP [dm3] 3L_877232_SNP [dm6]	C	A	5.555e^-4	0.904	DOWNSTREAM CG13907 INTRON CG32479
2R	9215755	2R_9215755_SNP [dm3] 2R_13328250_SNP [dm6]	T	A	5.563e^-4	0.904	INTERGENIC
2L	14100552	2L_14100552_SNP [dm3] 2L_14100552_SNP [dm6]	A	T	5.580e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8568222	2L_8568222_SNP [dm3] 2L_8568222_SNP [dm6]	T	G	5.585e^-4	0.904	INTRON Sema-1a
3L	13869943	3L_13869943_SNP [dm3] 3L_13876843_SNP [dm6]	C	T	5.598e^-4	0.904	INTRON dysc
2R	14397453	2R_14397453_SNP [dm3] 2R_18509948_SNP [dm6]	T	C	5.600e^-4	0.904	INTERGENIC
X	2470100	X_2470100_SNP [dm3] X_2576067_SNP [dm6]	T	A	5.604e^-4	0.904	INTRON Pdfr
3L	7466845	3L_7466845_SNP [dm3] 3L_7473745_SNP [dm6]	C	T	5.606e^-4	0.904	INTERGENIC
2L	6394693	2L_6394693_SNP [dm3] 2L_6394693_SNP [dm6]	C	T	5.610e^-4	0.904	INTRON CG42368
2L	6395126	2L_6395126_SNP [dm3] 2L_6395126_SNP [dm6]	T	A	5.610e^-4	0.904	DOWNSTREAM CG42369 INTRON CG42368
2R	12664146	2R_12664146_SNP [dm3] 2R_16776641_SNP [dm6]	C	A	5.648e^-4	0.904	DOWNSTREAM Arp53D INTERGENIC
2L	3447586	2L_3447586_SNP [dm3] 2L_3447586_SNP [dm6]	A	C	5.654e^-4	0.904	UTR_3_PRIME CG2772
2L	3102565	2L_3102565_SNP [dm3] 2L_3102565_SNP [dm6]	C	A	5.656e^-4	0.904	INTRON toc
X	13262211	X_13262211_SNP [dm3] X_13368178_SNP [dm6]	C	G	5.656e^-4	0.904	UTR_3_PRIME Syt12 UPSTREAM dmrt11E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7039797	3L_7039797_SNP [dm3] 3L_7046697_SNP [dm6]	C	T	5.660e^-4	0.904	INTRON Mp
3L	2882606	3L_2882606_SNP [dm3] 3L_2882606_SNP [dm6]	T	A	5.671e^-4	0.904	UPSTREAM CR44531 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	2882607	3L_2882607_SNP [dm3] 3L_2882607_SNP [dm6]	G	T	5.671e^-4	0.904	UPSTREAM CR44531 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	19801910	3R_19801910_SNP [dm3] 3R_23976188_SNP [dm6]	C	T	5.671e^-4	0.904	SYNONYMOUS_CODING CG31140	TF binding site mE1_TFBS_chinmo
2L	4201652	2L_4201652_SNP [dm3] 2L_4201652_SNP [dm6]	G	A	5.672e^-4	0.904	SYNONYMOUS_CODING ft
2L	10126492	2L_10126492_SNP [dm3] 2L_10126492_SNP [dm6]	G	A	5.708e^-4	0.904	DOWNSTREAM CG34109 INTRON CG44153
3L	11331657	3L_11331657_SNP [dm3] 3L_11338557_SNP [dm6]	A	C	5.710e^-4	0.904	INTERGENIC
3L	8244832	3L_8244832_SNP [dm3] 3L_8251732_SNP [dm6]	A	G	5.730e^-4	0.904	INTRON Dscam4
2R	13769456	2R_13769456_SNP [dm3] 2R_17881951_SNP [dm6]	A	G	5.735e^-4	0.904	SYNONYMOUS_CODING CG30110 INTRON Elk
3L	4961996	3L_4961996_SNP [dm3] 3L_4961996_SNP [dm6]	A	G	5.773e^-4	0.904	INTRON Con
X	9536611	X_9536611_SNP [dm3] X_9642578_SNP [dm6]	A	G	5.790e^-4	0.904	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
X	10342885	X_10342885_SNP [dm3] X_10448852_SNP [dm6]	G	A	5.792e^-4	0.904	INTRON CG32683
3R	24517202	3R_24517202_DEL [dm3] 3R_28691480_DEL [dm6]	CTATCCCCAGGGGC...	T	5.794e^-4	0.904	INTRON CG9990
2L	2401859	2L_2401859_SNP [dm3] 2L_2401859_SNP [dm6]	A	G	5.809e^-4	0.904	INTRON VGlut	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	11710476	3L_11710476_SNP [dm3] 3L_11717376_SNP [dm6]	T	A	5.813e^-4	0.904	INTERGENIC
3L	16969022	3L_16969022_SNP [dm3] 3L_16975922_SNP [dm6]	C	T	5.814e^-4	0.904	UPSTREAM Exn INTRON Exn
3L	16972171	3L_16972171_SNP [dm3] 3L_16979071_SNP [dm6]	T	C	5.814e^-4	0.904	INTRON Exn
3L	16972296	3L_16972296_SNP [dm3] 3L_16979196_SNP [dm6]	A	T	5.814e^-4	0.904	INTRON Exn
3L	16972299	3L_16972299_SNP [dm3] 3L_16979199_SNP [dm6]	G	C	5.814e^-4	0.904	INTRON Exn
3L	16972320	3L_16972320_SNP [dm3] 3L_16979220_SNP [dm6]	A	G	5.814e^-4	0.904	INTRON Exn
2R	10870153	2R_10870153_SNP [dm3] 2R_14982648_SNP [dm6]	C	T	5.830e^-4	0.904	INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	13707687	3L_13707687_SNP [dm3] 3L_13714587_SNP [dm6]	T	A	5.853e^-4	0.904	INTRON bru-3
2L	10366453	2L_10366453_SNP [dm3] 2L_10366453_SNP [dm6]	A	G	5.863e^-4	0.904	UPSTREAM CG5056 DOWNSTREAM lft INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10366454	2L_10366454_SNP [dm3] 2L_10366454_SNP [dm6]	A	C	5.863e^-4	0.904	UPSTREAM CG5056 DOWNSTREAM lft INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4130293	2L_4130293_SNP [dm3] 2L_4130293_SNP [dm6]	A	G	5.875e^-4	0.904	INTERGENIC
2R	10857816	2R_10857816_SNP [dm3] 2R_14970311_SNP [dm6]	T	C	5.875e^-4	0.904	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16277413	3R_16277413_SNP [dm3] 3R_20451691_SNP [dm6]	G	A	5.875e^-4	0.904	INTRON Gfrl
3R	16277448	3R_16277448_SNP [dm3] 3R_20451726_SNP [dm6]	C	A	5.875e^-4	0.904	INTRON Gfrl
X	12443760	X_12443760_SNP [dm3] X_12549727_SNP [dm6]	C	T	5.875e^-4	0.904	INTRON CG43921
X	20826251	X_20826251_SNP [dm3] X_20955224_SNP [dm6]	C	T	5.875e^-4	0.904	INTERGENIC
X	20826352	X_20826352_SNP [dm3] X_20955325_SNP [dm6]	A	G	5.875e^-4	0.904	INTERGENIC
X	20827174	X_20827174_SNP [dm3] X_20956147_SNP [dm6]	T	C	5.875e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20827329	X_20827329_INS [dm3] X_20956302_INS [dm6]	G	GG	5.875e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_inv
X	20348109	X_20348109_SNP [dm3] X_20477082_SNP [dm6]	A	G	5.887e^-4	0.904	INTRON RhoGAP19D
3L	10213001	3L_10213001_SNP [dm3] 3L_10219901_SNP [dm6]	A	T	5.903e^-4	0.904	SYNONYMOUS_CODING CG32055 DOWNSTREAM scramb1
3L	20877067	3L_20877067_SNP [dm3] 3L_20883967_SNP [dm6]	C	G	5.907e^-4	0.904	INTRON CG32432
3R	20200834	3R_20200834_SNP [dm3] 3R_24375112_SNP [dm6]	T	A	5.909e^-4	0.904	INTRON CG17781
3R	20200837	3R_20200837_DEL [dm3] 3R_24375115_DEL [dm6]	CGAAGT	C	5.909e^-4	0.904	INTRON CG17781
2R	16287371	2R_16287371_SNP [dm3] 2R_20399866_SNP [dm6]	G	A	5.914e^-4	0.904	INTERGENIC
3R	16736282	3R_16736282_SNP [dm3] 3R_20910560_SNP [dm6]	G	C	5.937e^-4	0.904	UTR_3_PRIME CG31191
3L	3972532	3L_3972532_SNP [dm3] 3L_3972532_SNP [dm6]	T	C	5.962e^-4	0.904	UPSTREAM CG43915 INTERGENIC	regulatory region REDfly_CRMs
3L	3972563	3L_3972563_SNP [dm3] 3L_3972563_SNP [dm6]	T	A	5.962e^-4	0.904	UPSTREAM CG43915 INTERGENIC	regulatory region REDfly_CRMs
X	3861865	X_3861865_SNP [dm3] X_3967832_SNP [dm6]	T	C	5.966e^-4	0.904	INTRON CG6428	TF binding site BDTNP1_TFBS_dl
3L	20886544	3L_20886544_SNP [dm3] 3L_20893444_SNP [dm6]	A	G	5.972e^-4	0.904	INTERGENIC
2R	8489998	2R_8489998_SNP [dm3] 2R_12602493_SNP [dm6]	A	G	5.986e^-4	0.904	INTRON Amph
2L	5454685	2L_5454685_SNP [dm3] 2L_5454685_SNP [dm6]	C	T	6.000e^-4	0.904	INTERGENIC
3L	16810925	3L_16810925_SNP [dm3] 3L_16817825_SNP [dm6]	C	G	6.024e^-4	0.904	INTRON nudC & 1 other
3L	722067	3L_722067_DEL [dm3] 3L_722067_DEL [dm6]	TGTGTGGT	T	6.036e^-4	0.904	INTERGENIC
3L	722096	3L_722096_DEL [dm3] 3L_722096_DEL [dm6]	TTGT	T	6.036e^-4	0.904	INTERGENIC
3L	722110	3L_722110_SNP [dm3] 3L_722110_SNP [dm6]	T	C	6.036e^-4	0.904	INTERGENIC
3R	11133817	3R_11133817_SNP [dm3] 3R_15308095_SNP [dm6]	C	G	6.047e^-4	0.904	SYNONYMOUS_CODING Tm1 UTR_3_PRIME Tm1 DOWNSTREAM Tm1
2R	1756555	2R_1756555_SNP [dm3] 2R_5869050_SNP [dm6]	A	T	6.049e^-4	0.904	INTERGENIC
2L	910032	2L_910032_SNP [dm3] 2L_910032_SNP [dm6]	A	G	6.052e^-4	0.904	INTERGENIC
3L	9021436	3L_9021436_SNP [dm3] 3L_9028336_SNP [dm6]	C	T	6.054e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	17716936	2R_17716936_SNP [dm3] 2R_21829431_SNP [dm6]	T	C	6.057e^-4	0.904	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9422088	2L_9422088_SNP [dm3] 2L_9422088_SNP [dm6]	A	G	6.059e^-4	0.904	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7426940	2R_7426940_SNP [dm3] 2R_11539435_SNP [dm6]	T	A	6.069e^-4	0.904	INTERGENIC
4	442572	4_442572_SNP [dm3] 4_421946_SNP [dm6]	G	T	6.074e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5890606	X_5890606_SNP [dm3] X_5996573_SNP [dm6]	A	G	6.081e^-4	0.904	DOWNSTREAM CG4766 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23916952	3R_23916952_SNP [dm3] 3R_28091230_SNP [dm6]	G	A	6.087e^-4	0.904	DOWNSTREAM CG34362 INTERGENIC
3L	5074820	3L_5074820_SNP [dm3] 3L_5074820_SNP [dm6]	A	C	6.107e^-4	0.904	INTRON Con
3R	8030784	3R_8030784_SNP [dm3] 3R_12205062_SNP [dm6]	C	A	6.109e^-4	0.904	INTERGENIC
X	2512430	X_2512430_SNP [dm3] X_2618397_SNP [dm6]	G	T	6.129e^-4	0.904	UTR_3_PRIME Tsp3A
3L	22885109	3L_22885109_SNP [dm3] 3L_22892009_SNP [dm6]	A	G	6.129e^-4	0.904	NON_SYNONYMOUS_CODING slif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16847280	2R_16847280_SNP [dm3] 2R_20959775_SNP [dm6]	T	C	6.130e^-4	0.904	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20824983	X_20824983_SNP [dm3] X_20953956_SNP [dm6]	T	A	6.148e^-4	0.904	INTERGENIC
2L	5412928	2L_5412928_SNP [dm3] 2L_5412928_SNP [dm6]	T	A	6.163e^-4	0.904	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4265062	2L_4265062_SNP [dm3] 2L_4265062_SNP [dm6]	C	T	6.164e^-4	0.904	INTERGENIC
3L	18142950	3L_18142950_SNP [dm3] 3L_18149850_SNP [dm6]	T	C	6.176e^-4	0.904	INTRON CG7330
2L	4263423	2L_4263423_INS [dm3] 2L_4263423_INS [dm6]	T	TTATAAGCTGAAAAT...	6.180e^-4	0.904	INTERGENIC
2L	8567845	2L_8567845_INS [dm3] 2L_8567845_INS [dm6]	A	AA	6.191e^-4	0.904	INTRON Sema-1a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13072927	2R_13072927_SNP [dm3] 2R_17185422_SNP [dm6]	A	G	6.198e^-4	0.904	EXON CR44387
3L	14796665	3L_14796665_INS [dm3] 3L_14803565_INS [dm6]	C	AGGAGTTTACGATTTACATT...	6.205e^-4	0.904	UPSTREAM gnu INTERGENIC
3L	11413549	3L_11413549_SNP [dm3] 3L_11420449_SNP [dm6]	A	G	6.205e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9488190	3L_9488190_SNP [dm3] 3L_9495090_SNP [dm6]	C	T	6.219e^-4	0.904	UTR_3_PRIME path
3L	4636110	3L_4636110_SNP [dm3] 3L_4636110_SNP [dm6]	T	G	6.229e^-4	0.904	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
3L	4636132	3L_4636132_SNP [dm3] 3L_4636132_SNP [dm6]	T	A	6.229e^-4	0.904	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
3R	10766183	3R_10766183_SNP [dm3] 3R_14940461_SNP [dm6]	G	A	6.245e^-4	0.904	INTERGENIC
2L	2867282	2L_2867282_SNP [dm3] 2L_2867282_SNP [dm6]	T	C	6.265e^-4	0.904	INTRON CG2991
3L	10212158	3L_10212158_SNP [dm3] 3L_10219058_SNP [dm6]	G	T	6.269e^-4	0.904	NON_SYNONYMOUS_CODING CG32055	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10212549	3L_10212549_SNP [dm3] 3L_10219449_SNP [dm6]	C	T	6.269e^-4	0.904	SYNONYMOUS_CODING CG32055
3L	10212571	3L_10212571_SNP [dm3] 3L_10219471_SNP [dm6]	A	C	6.269e^-4	0.904	NON_SYNONYMOUS_CODING CG32055
3L	10212765	3L_10212765_SNP [dm3] 3L_10219665_SNP [dm6]	C	T	6.269e^-4	0.904	NON_SYNONYMOUS_CODING CG32055 DOWNSTREAM scramb1
3L	10212819	3L_10212819_SNP [dm3] 3L_10219719_SNP [dm6]	A	T	6.269e^-4	0.904	NON_SYNONYMOUS_CODING CG32055 DOWNSTREAM scramb1
3L	10213174	3L_10213174_SNP [dm3] 3L_10220074_SNP [dm6]	A	G	6.269e^-4	0.904	NON_SYNONYMOUS_CODING CG32055 DOWNSTREAM scramb1
3L	11414194	3L_11414194_SNP [dm3] 3L_11421094_SNP [dm6]	T	A	6.273e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16729171	2R_16729171_SNP [dm3] 2R_20841666_SNP [dm6]	T	C	6.280e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4265046	2L_4265046_SNP [dm3] 2L_4265046_SNP [dm6]	G	A	6.293e^-4	0.904	INTERGENIC
2R	6435284	2R_6435284_SNP [dm3] 2R_10547779_SNP [dm6]	G	T	6.296e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15664154	3R_15664154_SNP [dm3] 3R_19838432_SNP [dm6]	A	C	6.297e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	9364319	2L_9364319_SNP [dm3] 2L_9364319_SNP [dm6]	C	G	6.304e^-4	0.904	EXON CR43404
X	22396146	X_22396146_INS [dm3] X_22994310_INS [dm6]	G	GTTAATACCTAAG...	6.305e^-4	0.904	INTRON stnA & 1 other
3L	11427908	3L_11427908_SNP [dm3] 3L_11434808_SNP [dm6]	G	A	6.313e^-4	0.904	SYNONYMOUS_CODING CG6149 UPSTREAM CR44548	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
X	14065757	X_14065757_SNP [dm3] X_14171724_SNP [dm6]	T	C	6.314e^-4	0.904	SYNONYMOUS_CODING betaNACtes1 DOWNSTREAM CG12480
3R	16721244	3R_16721244_SNP [dm3] 3R_20895522_SNP [dm6]	C	G	6.317e^-4	0.904	UTR_3_PRIME CG10830
3L	18137833	3L_18137833_SNP [dm3] 3L_18144733_SNP [dm6]	G	A	6.331e^-4	0.904	INTRON gk
2L	6697541	2L_6697541_DEL [dm3] 2L_6697541_DEL [dm6]	CA	C	6.333e^-4	0.904	INTRON Tsp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	1747397	2R_1747397_SNP [dm3] 2R_5859892_SNP [dm6]	G	A	6.334e^-4	0.904	UTR_3_PRIME dpr12
3R	22881876	3R_22881876_SNP [dm3] 3R_27056154_SNP [dm6]	G	T	6.341e^-4	0.904	INTRON RYa-R
3L	14428092	3L_14428092_SNP [dm3] 3L_14434992_SNP [dm6]	T	A	6.343e^-4	0.904	INTRON bbg
2L	14912788	2L_14912788_SNP [dm3] 2L_14912788_SNP [dm6]	C	T	6.344e^-4	0.904	INTRON CG42313
2L	14912789	2L_14912789_SNP [dm3] 2L_14912789_SNP [dm6]	C	T	6.344e^-4	0.904	INTRON CG42313
3L	14082273	3L_14082273_SNP [dm3] 3L_14089173_SNP [dm6]	A	G	6.345e^-4	0.904	INTERGENIC
3L	19081109	3L_19081109_SNP [dm3] 3L_19088009_SNP [dm6]	A	C	6.345e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26075388	3R_26075388_SNP [dm3] 3R_30249666_SNP [dm6]	A	T	6.357e^-4	0.904	NON_SYNONYMOUS_CODING CG34299 UPSTREAM tRNA:CR31023	TF binding site mE1_TFBS_inv
3L	15019683	3L_15019683_DEL [dm3] 3L_15026583_DEL [dm6]	TGCC	T	6.376e^-4	0.904	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl
3L	18072940	3L_18072940_SNP [dm3] 3L_18079840_SNP [dm6]	C	A	6.376e^-4	0.904	INTERGENIC
3L	12563492	3L_12563492_SNP [dm3] 3L_12570392_SNP [dm6]	G	A	6.386e^-4	0.904	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8448404	2R_8448404_SNP [dm3] 2R_12560899_SNP [dm6]	C	T	6.400e^-4	0.904	SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24557366	3R_24557366_SNP [dm3] 3R_28731644_SNP [dm6]	C	T	6.401e^-4	0.904	INTRON htt
2R	19510687	2R_19510687_SNP [dm3] 2R_23623164_SNP [dm6]	T	C	6.409e^-4	0.904	INTERGENIC
2L	19565521	2L_19565521_SNP [dm3] 2L_19565521_SNP [dm6]	A	C	6.410e^-4	0.904	UPSTREAM CG13077 DOWNSTREAM CG13078 INTERGENIC
3L	11266058	3L_11266058_SNP [dm3] 3L_11272958_SNP [dm6]	G	A	6.412e^-4	0.904	INTERGENIC
2L	4263215	2L_4263215_SNP [dm3] 2L_4263215_SNP [dm6]	C	T	6.415e^-4	0.904	INTERGENIC
2L	4263476	2L_4263476_SNP [dm3] 2L_4263476_SNP [dm6]	C	T	6.415e^-4	0.904	INTERGENIC
2L	4263656	2L_4263656_SNP [dm3] 2L_4263656_SNP [dm6]	G	A	6.415e^-4	0.904	INTERGENIC
2L	4264261	2L_4264261_SNP [dm3] 2L_4264261_SNP [dm6]	C	A	6.415e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4264301	2L_4264301_SNP [dm3] 2L_4264301_SNP [dm6]	T	A	6.415e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4265038	2L_4265038_SNP [dm3] 2L_4265038_SNP [dm6]	A	T	6.415e^-4	0.904	INTERGENIC
2L	4265064	2L_4265064_SNP [dm3] 2L_4265064_SNP [dm6]	T	A	6.415e^-4	0.904	INTERGENIC
2L	4266270	2L_4266270_SNP [dm3] 2L_4266270_SNP [dm6]	T	C	6.415e^-4	0.904	INTERGENIC
2L	7192312	2L_7192312_SNP [dm3] 2L_7192312_SNP [dm6]	C	T	6.432e^-4	0.904	INTRON CG4497	TF binding site mE1_TFBS_inv
3L	9833998	3L_9833998_SNP [dm3] 3L_9840898_SNP [dm6]	C	T	6.466e^-4	0.904	SYNONYMOUS_CODING RasGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3422988	X_3422988_SNP [dm3] X_3528955_SNP [dm6]	G	A	6.469e^-4	0.904	INTRON CG32791
3R	13621646	3R_13621646_SNP [dm3] 3R_17795924_SNP [dm6]	G	T	6.483e^-4	0.904	DOWNSTREAM CG7379 INTRON CG7713	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18142951	3L_18142951_SNP [dm3] 3L_18149851_SNP [dm6]	G	A	6.488e^-4	0.904	INTRON CG7330
X	7326309	X_7326309_SNP [dm3] X_7432276_SNP [dm6]	T	C	6.491e^-4	0.904	INTERGENIC
2R	19883122	2R_19883122_SNP [dm3] 2R_23995599_SNP [dm6]	T	C	6.509e^-4	0.904	UTR_3_PRIME Unc-89 UPSTREAM CG3860	TF binding site mE1_TFBS_cad
3L	20908241	3L_20908241_SNP [dm3] 3L_20915141_SNP [dm6]	C	G	6.514e^-4	0.904	INTERGENIC
3R	4371893	3R_4371893_SNP [dm3] 3R_8546171_SNP [dm6]	T	C	6.524e^-4	0.904	UPSTREAM CR45574 DOWNSTREAM CR45575 INTERGENIC
3R	25087832	3R_25087832_SNP [dm3] 3R_29262110_SNP [dm6]	C	A	6.526e^-4	0.904	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20265551	2L_20265551_INS [dm3] 2L_20265551_INS [dm6]	T	TCTGTATATCAT...	6.540e^-4	0.904	INTERGENIC
3L	19262280	3L_19262280_SNP [dm3] 3L_19269180_SNP [dm6]	C	T	6.541e^-4	0.904	UPSTREAM CG14085 & 1 other DOWNSTREAM CG14088 INTERGENIC
X	7326184	X_7326184_SNP [dm3] X_7432151_SNP [dm6]	C	G	6.558e^-4	0.904	INTERGENIC
X	14787054	X_14787054_SNP [dm3] X_14893021_SNP [dm6]	G	A	6.588e^-4	0.904	INTRON Flo2 & 1 other
2R	18747297	2R_18747297_SNP [dm3] 2R_22859774_SNP [dm6]	C	T	6.589e^-4	0.904	UPSTREAM inaD INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6469985	2R_6469985_SNP [dm3] 2R_10582480_SNP [dm6]	C	A	6.592e^-4	0.904	INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	13853476	3L_13853476_SNP [dm3] 3L_13860376_SNP [dm6]	T	C	6.602e^-4	0.904	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8167051	2L_8167051_SNP [dm3] 2L_8167051_SNP [dm6]	A	G	6.608e^-4	0.904	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10735580	3L_10735580_SNP [dm3] 3L_10742480_SNP [dm6]	A	T	6.612e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	17720944	2R_17720944_SNP [dm3] 2R_21833439_SNP [dm6]	T	C	6.616e^-4	0.904	SYNONYMOUS_CODING CG34040 DOWNSTREAM CG4363
2R	1762089	2R_1762089_SNP [dm3] 2R_5874584_SNP [dm6]	G	A	6.625e^-4	0.904	INTERGENIC
X	20824541	X_20824541_SNP [dm3] X_20953514_SNP [dm6]	T	C	6.634e^-4	0.904	INTERGENIC
2L	8567629	2L_8567629_INS [dm3] 2L_8567629_INS [dm6]	A	AA	6.635e^-4	0.904	INTRON Sema-1a
2L	8569618	2L_8569618_SNP [dm3] 2L_8569618_SNP [dm6]	T	G	6.635e^-4	0.904	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4027285	3L_4027285_SNP [dm3] 3L_4027285_SNP [dm6]	G	T	6.637e^-4	0.904	SYNONYMOUS_CODING Gr64a
3L	4027306	3L_4027306_SNP [dm3] 3L_4027306_SNP [dm6]	G	C	6.637e^-4	0.904	SYNONYMOUS_CODING Gr64a
3R	11303929	3R_11303929_SNP [dm3] 3R_15478207_SNP [dm6]	C	G	6.637e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11303930	3R_11303930_SNP [dm3] 3R_15478208_SNP [dm6]	T	C	6.637e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3955632	X_3955632_SNP [dm3] X_4061599_SNP [dm6]	T	G	6.640e^-4	0.904	INTERGENIC
X	10481438	X_10481438_INS [dm3] X_10587405_INS [dm6]	T	TT	6.652e^-4	0.904	INTERGENIC
3R	5022947	3R_5022947_SNP [dm3] 3R_9197225_SNP [dm6]	T	G	6.653e^-4	0.904	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17594897	2R_17594897_SNP [dm3] 2R_21707392_SNP [dm6]	C	T	6.656e^-4	0.904	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15664227	3R_15664227_SNP [dm3] 3R_19838505_SNP [dm6]	C	T	6.667e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	17944788	2R_17944788_SNP [dm3] 2R_22057283_SNP [dm6]	T	C	6.671e^-4	0.904	SYNONYMOUS_CODING CG13500	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10092964	2R_10092964_SNP [dm3] 2R_14205459_SNP [dm6]	C	A	6.682e^-4	0.904	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2868559	3L_2868559_SNP [dm3] 3L_2868559_SNP [dm6]	T	C	6.682e^-4	0.904	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14397705	2L_14397705_SNP [dm3] 2L_14397705_SNP [dm6]	A	T	6.716e^-4	0.904	INTRON elB
2L	11485847	2L_11485847_SNP [dm3] 2L_11485847_SNP [dm6]	G	A	6.723e^-4	0.904	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16827024	2L_16827024_SNP [dm3] 2L_16827024_SNP [dm6]	C	T	6.725e^-4	0.904	UPSTREAM CG31739 DOWNSTREAM mdy INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13438179	X_13438179_SNP [dm3] X_13544146_SNP [dm6]	A	G	6.726e^-4	0.904	INTRON Cpr12A
2L	3613757	2L_3613757_SNP [dm3] 2L_3613757_SNP [dm6]	T	C	6.727e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18134595	3L_18134595_SNP [dm3] 3L_18141495_SNP [dm6]	T	C	6.728e^-4	0.904	INTRON gk
3L	12721425	3L_12721425_SNP [dm3] 3L_12728325_SNP [dm6]	G	A	6.735e^-4	0.904	INTERGENIC
3R	1673661	3R_1673661_SNP [dm3] 3R_5847939_SNP [dm6]	C	T	6.735e^-4	0.904	SYNONYMOUS_CODING CG14676	TF binding site mE1_TFBS_cad
X	19612855	X_19612855_SNP [dm3] X_19718822_SNP [dm6]	G	A	6.744e^-4	0.904	UPSTREAM CG12531 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18328927	2R_18328927_SNP [dm3] 2R_22441422_SNP [dm6]	T	C	6.757e^-4	0.904	INTERGENIC
2L	6773698	2L_6773698_SNP [dm3] 2L_6773698_SNP [dm6]	G	C	6.760e^-4	0.904	UPSTREAM CG11321 & 1 other INTERGENIC
2R	5302218	2R_5302218_SNP [dm3] 2R_9414713_SNP [dm6]	A	G	6.769e^-4	0.904	UTR_5_PRIME wun2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2351242	2L_2351242_SNP [dm3] 2L_2351242_SNP [dm6]	A	G	6.772e^-4	0.904	INTRON CG9967 & 1 other
2R	13958967	2R_13958967_SNP [dm3] 2R_18071462_SNP [dm6]	A	T	6.781e^-4	0.904	INTRON CG34386
3R	14106047	3R_14106047_SNP [dm3] 3R_18280325_SNP [dm6]	G	A	6.799e^-4	0.904	UPSTREAM CG7142 INTRON eIF-1A
2R	19510764	2R_19510764_SNP [dm3] 2R_23623241_SNP [dm6]	C	G	6.802e^-4	0.904	INTERGENIC
X	19616163	X_19616163_SNP [dm3] X_19722130_SNP [dm6]	A	G	6.802e^-4	0.904	INTRON CG12531
2L	6813705	2L_6813705_SNP [dm3] 2L_6813705_SNP [dm6]	C	T	6.806e^-4	0.904	DOWNSTREAM CR44081 INTERGENIC
3R	17980708	3R_17980708_SNP [dm3] 3R_22154986_SNP [dm6]	A	G	6.811e^-4	0.904	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17720656	2R_17720656_SNP [dm3] 2R_21833151_SNP [dm6]	C	G	6.816e^-4	0.904	INTRON CG34040
3L	14088255	3L_14088255_SNP [dm3] 3L_14095155_SNP [dm6]	C	T	6.843e^-4	0.904	SYNONYMOUS_CODING Fbp1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1755658	2R_1755658_SNP [dm3] 2R_5868153_SNP [dm6]	A	G	6.853e^-4	0.904	INTERGENIC
3R	12745588	3R_12745588_SNP [dm3] 3R_16919866_SNP [dm6]	A	G	6.857e^-4	0.904	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	13949110	2R_13949110_SNP [dm3] 2R_18061605_SNP [dm6]	A	T	6.858e^-4	0.904	UPSTREAM CG34386 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13949135	2R_13949135_SNP [dm3] 2R_18061630_SNP [dm6]	G	A	6.858e^-4	0.904	UPSTREAM CG34386 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17689510	3R_17689510_SNP [dm3] 3R_21863788_SNP [dm6]	T	C	6.858e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11455139	3R_11455139_SNP [dm3] 3R_15629417_SNP [dm6]	C	G	6.872e^-4	0.904	INTERGENIC
2L	10127212	2L_10127212_SNP [dm3] 2L_10127212_SNP [dm6]	C	G	6.874e^-4	0.904	INTRON CG44153
2R	3798739	2R_3798739_SNP [dm3] 2R_7911234_SNP [dm6]	T	A	6.879e^-4	0.904	INTRON CG30377
3L	16792951	3L_16792951_SNP [dm3] 3L_16799851_SNP [dm6]	C	T	6.886e^-4	0.904	UTR_5_PRIME CG9674	TF binding site BDTNP1_TFBS_dl
2R	17376040	2R_17376040_SNP [dm3] 2R_21488535_SNP [dm6]	A	G	6.889e^-4	0.904	INTRON Fkbp14	TF binding site BDTNP1_TFBS_twi
3R	25087870	3R_25087870_SNP [dm3] 3R_29262148_SNP [dm6]	G	C	6.890e^-4	0.904	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	3127061	X_3127061_SNP [dm3] X_3233028_SNP [dm6]	G	A	6.902e^-4	0.904	INTRON dnc
3L	3818451	3L_3818451_SNP [dm3] 3L_3818451_SNP [dm6]	C	T	6.913e^-4	0.904	UPSTREAM enc DOWNSTREAM Scsalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	14787032	X_14787032_SNP [dm3] X_14892999_SNP [dm6]	A	G	6.926e^-4	0.904	INTRON Flo2 & 1 other
X	14787035	X_14787035_DEL [dm3] X_14893002_DEL [dm6]	AT	A	6.926e^-4	0.904	INTRON Flo2 & 1 other
2R	16090769	2R_16090769_SNP [dm3] 2R_20203264_SNP [dm6]	T	C	6.928e^-4	0.904	INTERGENIC
2R	12861064	2R_12861064_SNP [dm3] 2R_16973559_SNP [dm6]	T	C	6.932e^-4	0.904	UPSTREAM Cbp53E INTERGENIC
2L	3924815	2L_3924815_SNP [dm3] 2L_3924815_SNP [dm6]	G	A	6.941e^-4	0.904	INTRON fred
3L	11946902	3L_11946902_SNP [dm3] 3L_11953802_SNP [dm6]	G	C	6.951e^-4	0.904	UPSTREAM CG7248 & 1 other INTERGENIC
X	21960880	X_21960880_SNP [dm3] X_22559044_SNP [dm6]	T	C	6.959e^-4	0.904	INTERGENIC	transposable element FlyBase
2R	4737100	2R_4737100_SNP [dm3] 2R_8849595_SNP [dm6]	A	T	6.967e^-4	0.904	INTRON sns
X	10232666	X_10232666_SNP [dm3] X_10338633_SNP [dm6]	T	G	6.970e^-4	0.904	INTRON CG43740
3L	16048086	3L_16048086_SNP [dm3] 3L_16054986_SNP [dm6]	A	T	6.972e^-4	0.904	INTRON Mbs	TF binding site mE1_TFBS_HSA
3L	16972288	3L_16972288_SNP [dm3] 3L_16979188_SNP [dm6]	T	G	7.023e^-4	0.904	INTRON Exn
3L	16972323	3L_16972323_SNP [dm3] 3L_16979223_SNP [dm6]	T	C	7.023e^-4	0.904	INTRON Exn
3R	12555710	3R_12555710_SNP [dm3] 3R_16729988_SNP [dm6]	A	C	7.026e^-4	0.904	INTRON Ubx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2475079	X_2475079_SNP [dm3] X_2581046_SNP [dm6]	G	A	7.033e^-4	0.904	UTR_5_PRIME CG13759 UPSTREAM Vha36-3
3R	16979676	3R_16979676_SNP [dm3] 3R_21153954_SNP [dm6]	C	T	7.035e^-4	0.904	INTRON SNF4Agamma
2L	4135423	2L_4135423_SNP [dm3] 2L_4135423_SNP [dm6]	T	C	7.044e^-4	0.904	INTERGENIC
2R	18649209	2R_18649209_SNP [dm3] 2R_22761704_SNP [dm6]	C	T	7.053e^-4	0.904	INTRON CG42260	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17174481	3R_17174481_SNP [dm3] 3R_21348759_SNP [dm6]	C	T	7.068e^-4	0.904	UTR_5_PRIME CG16791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16842069	2L_16842069_SNP [dm3] 2L_16842069_SNP [dm6]	A	G	7.070e^-4	0.904	DOWNSTREAM CG13284 & 2 others INTERGENIC
2R	7426990	2R_7426990_SNP [dm3] 2R_11539485_SNP [dm6]	A	G	7.088e^-4	0.904	INTERGENIC
2L	14920937	2L_14920937_SNP [dm3] 2L_14920937_SNP [dm6]	A	C	7.089e^-4	0.904	INTRON CG42313
3R	12384609	3R_12384609_SNP [dm3] 3R_16558887_SNP [dm6]	A	G	7.089e^-4	0.904	INTRON CG42342
3R	2470889	3R_2470889_INS [dm3] 3R_6645167_INS [dm6]	C	CGTC	7.092e^-4	0.904	UPSTREAM CG1315 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	2470891	3R_2470891_SNP [dm3] 3R_6645169_SNP [dm6]	A	T	7.092e^-4	0.904	UPSTREAM CG1315 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	2474301	3R_2474301_SNP [dm3] 3R_6648579_SNP [dm6]	C	A	7.092e^-4	0.904	NON_SYNONYMOUS_CODING Taf1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17550683	2L_17550683_SNP [dm3] 2L_17550683_SNP [dm6]	A	C	7.093e^-4	0.904	INTERGENIC
X	806108	X_806108_DEL [dm3] X_912075_DEL [dm6]	CAGGTATTTTGGGAGTACCT...	C	7.097e^-4	0.904	INTRON CG43867
3L	21030311	3L_21030311_SNP [dm3] 3L_21037211_SNP [dm6]	C	A	7.099e^-4	0.904	INTRON siz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4165597	2L_4165597_SNP [dm3] 2L_4165597_SNP [dm6]	T	C	7.113e^-4	0.904	INTRON Or24a
2R	10642903	2R_10642903_SNP [dm3] 2R_14755398_SNP [dm6]	C	G	7.125e^-4	0.904	SYNONYMOUS_CODING CG10151	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
2L	8565954	2L_8565954_SNP [dm3] 2L_8565954_SNP [dm6]	C	A	7.138e^-4	0.904	INTRON Sema-1a
3L	3421864	3L_3421864_SNP [dm3] 3L_3421864_SNP [dm6]	T	C	7.139e^-4	0.904	INTRON sty
2R	14473806	2R_14473806_SNP [dm3] 2R_18586301_SNP [dm6]	G	C	7.147e^-4	0.904	INTRON GEFmeso	TF binding site mE1_TFBS_sens
2L	1510046	2L_1510046_SNP [dm3] 2L_1510046_SNP [dm6]	A	T	7.151e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	4931219	2L_4931219_SNP [dm3] 2L_4931219_SNP [dm6]	T	C	7.155e^-4	0.904	INTRON hoe1
2L	4931224	2L_4931224_DEL [dm3] 2L_4931224_DEL [dm6]	TTG	CA	7.155e^-4	0.904	INTRON hoe1
3L	11313434	3L_11313434_SNP [dm3] 3L_11320334_SNP [dm6]	G	A	7.161e^-4	0.904	UTR_3_PRIME CG6168 DOWNSTREAM CG6168
3L	18487099	3L_18487099_SNP [dm3] 3L_18493999_SNP [dm6]	T	A	7.184e^-4	0.904	INTRON AstC-R2
3L	18487110	3L_18487110_SNP [dm3] 3L_18494010_SNP [dm6]	T	G	7.184e^-4	0.904	INTRON AstC-R2
3L	18487111	3L_18487111_SNP [dm3] 3L_18494011_SNP [dm6]	G	A	7.184e^-4	0.904	INTRON AstC-R2
2L	5738675	2L_5738675_DEL [dm3] 2L_5738675_DEL [dm6]	GCTCTTTATAG...	G	7.185e^-4	0.904	INTRON CG11030 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	7461326	3L_7461326_SNP [dm3] 3L_7468226_SNP [dm6]	G	A	7.188e^-4	0.904	SYNONYMOUS_CODING Tsp66A UTR_3_PRIME CG42660 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	3140850	3L_3140850_SNP [dm3] 3L_3140850_SNP [dm6]	A	T	7.196e^-4	0.904	UPSTREAM CG11537 INTRON CG11537
2R	1743247	2R_1743247_DEL [dm3] 2R_5855742_DEL [dm6]	GACATGGGAGTCGGATTGG...	G	7.196e^-4	0.904	INTRON dpr12	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16910959	2L_16910959_SNP [dm3] 2L_16910959_SNP [dm6]	A	G	7.199e^-4	0.904	SYNONYMOUS_CODING tweek UPSTREAM ApepP	TF binding site mE1_TFBS_cad
2R	12438283	2R_12438283_SNP [dm3] 2R_16550778_SNP [dm6]	A	C	7.201e^-4	0.904	INTERGENIC
X	2471943	X_2471943_SNP [dm3] X_2577910_SNP [dm6]	C	A	7.206e^-4	0.904	UTR_3_PRIME Pdfr DOWNSTREAM Pdfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20785647	3L_20785647_SNP [dm3] 3L_20792547_SNP [dm6]	C	T	7.206e^-4	0.904	UTR_5_PRIME Six4 UPSTREAM Six4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	21759596	2L_21759596_DEL [dm3] 2L_21759596_DEL [dm6]	TT	T	7.216e^-4	0.904	INTRON CG1416
3L	16972293	3L_16972293_SNP [dm3] 3L_16979193_SNP [dm6]	G	A	7.218e^-4	0.904	INTRON Exn
X	8186382	X_8186382_SNP [dm3] X_8292349_SNP [dm6]	C	T	7.220e^-4	0.904	SYNONYMOUS_CODING nAChRalpha3
2L	3102052	2L_3102052_SNP [dm3] 2L_3102052_SNP [dm6]	T	C	7.240e^-4	0.904	INTRON toc
X	20348218	X_20348218_SNP [dm3] X_20477191_SNP [dm6]	T	C	7.242e^-4	0.904	SPLICE_SITE_REGION RhoGAP19D INTRON RhoGAP19D
2L	19565464	2L_19565464_SNP [dm3] 2L_19565464_SNP [dm6]	G	A	7.255e^-4	0.904	UPSTREAM CG13077 DOWNSTREAM CG13078 INTERGENIC
2L	19565558	2L_19565558_INS [dm3] 2L_19565558_INS [dm6]	C	AT	7.255e^-4	0.904	UPSTREAM CG13077 DOWNSTREAM CG13078 INTERGENIC
2L	19565579	2L_19565579_INS [dm3] 2L_19565579_INS [dm6]	T	ACACGGAAATTATTAATTCC...	7.255e^-4	0.904	UPSTREAM CG13077 DOWNSTREAM CG13078 INTERGENIC
2R	11217275	2R_11217275_SNP [dm3] 2R_15329770_SNP [dm6]	T	C	7.258e^-4	0.904	DOWNSTREAM CR44371 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22877897	3R_22877897_SNP [dm3] 3R_27052175_SNP [dm6]	G	A	7.284e^-4	0.904	INTRON RYa-R
2L	13887895	2L_13887895_SNP [dm3] 2L_13887895_SNP [dm6]	A	T	7.287e^-4	0.904	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	16657776	2L_16657776_SNP [dm3] 2L_16657776_SNP [dm6]	C	T	7.290e^-4	0.904	NON_SYNONYMOUS_CODING CG42389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4636209	3L_4636209_SNP [dm3] 3L_4636209_SNP [dm6]	A	G	7.291e^-4	0.904	DOWNSTREAM axo INTRON axo
3R	21062401	3R_21062401_SNP [dm3] 3R_25236679_SNP [dm6]	T	G	7.309e^-4	0.904	UPSTREAM CG11852 INTERGENIC
2L	15786670	2L_15786670_SNP [dm3] 2L_15786670_SNP [dm6]	A	G	7.310e^-4	0.904	NON_SYNONYMOUS_CODING CG18109
3R	22213695	3R_22213695_SNP [dm3] 3R_26387973_SNP [dm6]	A	T	7.324e^-4	0.904	INTERGENIC
2R	14940649	2R_14940649_SNP [dm3] 2R_19053144_SNP [dm6]	A	G	7.328e^-4	0.904	INTERGENIC
3R	13645478	3R_13645478_SNP [dm3] 3R_17819756_SNP [dm6]	G	C	7.334e^-4	0.904	INTRON tinc
2L	19565537	2L_19565537_SNP [dm3] 2L_19565537_SNP [dm6]	C	A	7.339e^-4	0.904	UPSTREAM CG13077 DOWNSTREAM CG13078 INTERGENIC
3R	25682482	3R_25682482_SNP [dm3] 3R_29856760_SNP [dm6]	A	G	7.348e^-4	0.904	SYNONYMOUS_CODING dgt1 DOWNSTREAM CG7824	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12541126	2R_12541126_SNP [dm3] 2R_16653621_SNP [dm6]	C	G	7.356e^-4	0.904	UPSTREAM Amyrel INTRON Nach
2R	15062467	2R_15062467_SNP [dm3] 2R_19174962_SNP [dm6]	G	C	7.361e^-4	0.904	SYNONYMOUS_CODING CG10737
X	16924866	X_16924866_SNP [dm3] X_17030833_SNP [dm6]	A	G	7.367e^-4	0.904	INTRON CG45002
X	20824995	X_20824995_INS [dm3] X_20953968_INS [dm6]	A	AAAAAA	7.370e^-4	0.904	INTERGENIC
3L	13707758	3L_13707758_SNP [dm3] 3L_13714658_SNP [dm6]	A	T	7.382e^-4	0.904	INTRON bru-3
3R	23124846	3R_23124846_SNP [dm3] 3R_27299124_SNP [dm6]	G	A	7.387e^-4	0.904	INTRON CG3339
2R	12408130	2R_12408130_SNP [dm3] 2R_16520625_SNP [dm6]	C	T	7.398e^-4	0.904	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	722091	3L_722091_SNP [dm3] 3L_722091_SNP [dm6]	T	A	7.403e^-4	0.904	INTERGENIC
2L	3455535	2L_3455535_SNP [dm3] 2L_3455535_SNP [dm6]	C	T	7.403e^-4	0.904	INTRON Cog3
2L	3455545	2L_3455545_SNP [dm3] 2L_3455545_SNP [dm6]	A	C	7.403e^-4	0.904	INTRON Cog3
2L	3083578	2L_3083578_SNP [dm3] 2L_3083578_SNP [dm6]	C	T	7.403e^-4	0.904	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	5410256	2L_5410256_SNP [dm3] 2L_5410256_SNP [dm6]	G	A	7.404e^-4	0.904	INTRON H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2125797	3L_2125797_SNP [dm3] 3L_2125797_SNP [dm6]	T	C	7.409e^-4	0.904	NON_SYNONYMOUS_CODING zormin UTR_3_PRIME zormin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26393358	3R_26393358_SNP [dm3] 3R_30567636_SNP [dm6]	C	T	7.419e^-4	0.904	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	16847394	2R_16847394_SNP [dm3] 2R_20959889_SNP [dm6]	G	A	7.421e^-4	0.904	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25087734	3R_25087734_SNP [dm3] 3R_29262012_SNP [dm6]	G	A	7.425e^-4	0.904	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25459289	3R_25459289_SNP [dm3] 3R_29633567_SNP [dm6]	T	C	7.428e^-4	0.904	INTRON Dop1R2
3L	8751600	3L_8751600_SNP [dm3] 3L_8758500_SNP [dm6]	C	T	7.433e^-4	0.904	INTRON Fhos
2L	9532172	2L_9532172_SNP [dm3] 2L_9532172_SNP [dm6]	C	T	7.451e^-4	0.904	INTRON Oatp30B	TF binding site mE1_TFBS_sens
2L	9838920	2L_9838920_SNP [dm3] 2L_9838920_SNP [dm6]	A	T	7.460e^-4	0.904	INTRON nAChRalpha6
2R	7426082	2R_7426082_SNP [dm3] 2R_11538577_SNP [dm6]	T	C	7.465e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_chinmo
X	20827998	X_20827998_SNP [dm3] X_20956971_SNP [dm6]	A	C	7.469e^-4	0.904	INTERGENIC
3R	6671924	3R_6671924_SNP [dm3] 3R_10846202_SNP [dm6]	G	C	7.481e^-4	0.904	SYNONYMOUS_CODING Cad86C UTR_3_PRIME Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	1154774	2R_1154774_SNP [dm3] 2R_5267269_SNP [dm6]	G	A	7.490e^-4	0.904	INTRON d4
2R	1156894	2R_1156894_SNP [dm3] 2R_5269389_SNP [dm6]	A	G	7.490e^-4	0.904	INTRON d4
2R	7434943	2R_7434943_SNP [dm3] 2R_11547438_SNP [dm6]	A	G	7.528e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	5984376	X_5984376_SNP [dm3] X_6090343_SNP [dm6]	T	A	7.533e^-4	0.904	UPSTREAM raptor & 1 other INTRON Mipp2 & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	15129720	2R_15129720_SNP [dm3] 2R_19242215_SNP [dm6]	G	A	7.533e^-4	0.904	SYNONYMOUS_CODING cora INTRON cora
2R	18642457	2R_18642457_DEL [dm3] 2R_22754952_DEL [dm6]	CC	C	7.534e^-4	0.904	UPSTREAM CG13526 INTRON CG42260
3R	11694878	3R_11694878_SNP [dm3] 3R_15869156_SNP [dm6]	C	T	7.547e^-4	0.904	INTRON CG31183
X	3939192	X_3939192_SNP [dm3] X_4045159_SNP [dm6]	A	G	7.563e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20434946	3R_20434946_INS [dm3] 3R_24609224_INS [dm6]	T	TT	7.568e^-4	0.904	INTRON mld
2R	1756660	2R_1756660_SNP [dm3] 2R_5869155_SNP [dm6]	C	T	7.579e^-4	0.904	INTERGENIC
2R	18509891	2R_18509891_SNP [dm3] 2R_22622386_SNP [dm6]	C	T	7.592e^-4	0.904	INTRON CG33143
3L	20976701	3L_20976701_SNP [dm3] 3L_20983601_SNP [dm6]	C	T	7.610e^-4	0.904	INTERGENIC
3L	20990818	3L_20990818_SNP [dm3] 3L_20997718_SNP [dm6]	C	G	7.610e^-4	0.904	NON_SYNONYMOUS_CODING skd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	21872326	X_21872326_SNP [dm3] X_22470490_SNP [dm6]	A	G	7.622e^-4	0.904	UTR_3_PRIME CG14613 DOWNSTREAM CG14619 INTRON CG14613
3R	9942858	3R_9942858_SNP [dm3] 3R_14117136_SNP [dm6]	A	G	7.639e^-4	0.904	INTRON Kif19A
3R	9942867	3R_9942867_SNP [dm3] 3R_14117145_SNP [dm6]	A	G	7.639e^-4	0.904	INTRON Kif19A
3R	20200789	3R_20200789_SNP [dm3] 3R_24375067_SNP [dm6]	A	T	7.639e^-4	0.904	INTRON CG17781
3R	20200800	3R_20200800_SNP [dm3] 3R_24375078_SNP [dm6]	T	A	7.639e^-4	0.904	INTRON CG17781
3R	20200801	3R_20200801_SNP [dm3] 3R_24375079_SNP [dm6]	C	T	7.639e^-4	0.904	INTRON CG17781
3R	20200816	3R_20200816_SNP [dm3] 3R_24375094_SNP [dm6]	G	A	7.639e^-4	0.904	INTRON CG17781
3R	20200849	3R_20200849_SNP [dm3] 3R_24375127_SNP [dm6]	T	A	7.639e^-4	0.904	INTRON CG17781
3R	20200852	3R_20200852_SNP [dm3] 3R_24375130_SNP [dm6]	A	T	7.639e^-4	0.904	INTRON CG17781
3R	20200856	3R_20200856_SNP [dm3] 3R_24375134_SNP [dm6]	G	A	7.639e^-4	0.904	INTRON CG17781
3R	4808834	3R_4808834_DEL [dm3] 3R_8983112_DEL [dm6]	ATCA	A	7.642e^-4	0.904	DOWNSTREAM CAHbeta
X	9413330	X_9413330_SNP [dm3] X_9519297_SNP [dm6]	T	A	7.656e^-4	0.904	INTRON CG32700
2L	16911994	2L_16911994_SNP [dm3] 2L_16911994_SNP [dm6]	C	A	7.659e^-4	0.904	SYNONYMOUS_CODING tweek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	16905597	3L_16905597_SNP [dm3] 3L_16912497_SNP [dm6]	G	A	7.675e^-4	0.904	INTRON Lmpt
3L	3972580	3L_3972580_SNP [dm3] 3L_3972580_SNP [dm6]	A	T	7.679e^-4	0.904	UPSTREAM CG43915 INTERGENIC	regulatory region REDfly_CRMs
3L	3972590	3L_3972590_SNP [dm3] 3L_3972590_SNP [dm6]	A	G	7.679e^-4	0.904	UPSTREAM CG43915 INTERGENIC	regulatory region REDfly_CRMs
X	20827345	X_20827345_SNP [dm3] X_20956318_SNP [dm6]	T	G	7.721e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_inv
X	20827353	X_20827353_SNP [dm3] X_20956326_SNP [dm6]	T	A	7.721e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_inv
X	20827357	X_20827357_SNP [dm3] X_20956330_SNP [dm6]	T	A	7.721e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_inv
X	20827360	X_20827360_SNP [dm3] X_20956333_SNP [dm6]	A	G	7.721e^-4	0.904	INTERGENIC	TF binding site mE1_TFBS_inv
2L	13309049	2L_13309049_SNP [dm3] 2L_13309049_SNP [dm6]	C	T	7.722e^-4	0.904	SYNONYMOUS_CODING CG43778 UTR_5_PRIME CG43778	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11134754	3L_11134754_SNP [dm3] 3L_11141654_SNP [dm6]	T	A	7.722e^-4	0.904	INTRON CG32082
2L	1477908	2L_1477908_SNP [dm3] 2L_1477908_SNP [dm6]	C	A	7.730e^-4	0.904	INTERGENIC
3L	4376078	3L_4376078_SNP [dm3] 3L_4376078_SNP [dm6]	A	T	7.738e^-4	0.904	INTRON DopEcR
X	22368509	X_22368509_SNP [dm3] X_22966673_SNP [dm6]	G	T	7.741e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6521746	3L_6521746_SNP [dm3] 3L_6528646_SNP [dm6]	C	A	7.742e^-4	0.904	INTRON sfl
2L	530266	2L_530266_SNP [dm3] 2L_530266_SNP [dm6]	G	T	7.743e^-4	0.904	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	12266465	2R_12266465_SNP [dm3] 2R_16378960_SNP [dm6]	C	G	7.756e^-4	0.904	DOWNSTREAM CR45317 EXON CR45316
2L	15093000	2L_15093000_SNP [dm3] 2L_15093000_SNP [dm6]	G	A	7.757e^-4	0.904	NON_SYNONYMOUS_CODING CG15270 INTRON CG15270
3L	5224094	3L_5224094_SNP [dm3] 3L_5230994_SNP [dm6]	T	A	7.759e^-4	0.904	INTRON shep
3L	5224095	3L_5224095_SNP [dm3] 3L_5230995_SNP [dm6]	G	A	7.759e^-4	0.904	INTRON shep
2L	3156655	2L_3156655_SNP [dm3] 2L_3156655_SNP [dm6]	C	T	7.773e^-4	0.904	INTRON Mad
3R	23113753	3R_23113753_SNP [dm3] 3R_27288031_SNP [dm6]	C	T	7.782e^-4	0.904	SYNONYMOUS_CODING bigmax UPSTREAM Hmu DOWNSTREAM CG3368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	7359808	3L_7359808_SNP [dm3] 3L_7366708_SNP [dm6]	A	G	7.796e^-4	0.904	DOWNSTREAM Sh3beta INTRON Sh3beta
3R	14730062	3R_14730062_SNP [dm3] 3R_18904340_SNP [dm6]	A	G	7.806e^-4	0.904	DOWNSTREAM CG14292 INTERGENIC
2R	12396955	2R_12396955_SNP [dm3] 2R_16509450_SNP [dm6]	T	C	7.812e^-4	0.904	INTRON Sema-2a
2R	18889162	2R_18889162_SNP [dm3] 2R_23001639_SNP [dm6]	A	C	7.822e^-4	0.904	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	4100681	3L_4100681_DEL [dm3] 3L_4100681_DEL [dm6]	CTC	C	7.830e^-4	0.904	INTRON CG14995
3L	18072956	3L_18072956_SNP [dm3] 3L_18079856_SNP [dm6]	A	G	7.841e^-4	0.904	INTERGENIC
2R	20947054	2R_20947054_SNP [dm3] 2R_25059531_SNP [dm6]	T	C	7.862e^-4	0.904	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	22188331	3R_22188331_SNP [dm3] 3R_26362609_SNP [dm6]	C	A	7.869e^-4	0.904	DOWNSTREAM CG33970 INTERGENIC
2L	20221870	2L_20221870_SNP [dm3] 2L_20221870_SNP [dm6]	T	G	7.883e^-4	0.904	INTERGENIC	transposable element FlyBase

By genomic position
Variant impact
Gene name

f phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results