DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.269e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	5.0168	0.0814

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2002 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	8078685	2R_8078685_SNP [dm3] 2R_12191180_SNP [dm6]	G	A	1.485e^-7	0.208	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
2R	8089676	2R_8089676_SNP [dm3] 2R_12202171_SNP [dm6]	A	T	3.750e^-7	0.208	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9031423	3R_9031423_SNP [dm3] 3R_13205701_SNP [dm6]	G	T	3.784e^-7	0.208	INTERGENIC
3R	24571138	3R_24571138_SNP [dm3] 3R_28745416_SNP [dm6]	T	A	4.680e^-7	0.208	UPSTREAM AstA-R2 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	8988335	3R_8988335_SNP [dm3] 3R_13162613_SNP [dm6]	C	G	5.692e^-7	0.208	NON_SYNONYMOUS_CODING timeout
2R	8091687	2R_8091687_SNP [dm3] 2R_12204182_SNP [dm6]	A	G	7.731e^-7	0.208	INTERGENIC
2R	8078974	2R_8078974_SNP [dm3] 2R_12191469_SNP [dm6]	G	C	7.761e^-7	0.208	NON_SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
X	15551588	X_15551588_SNP [dm3] X_15657555_SNP [dm6]	C	A	1.278e^-6	0.289	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	8078684	2R_8078684_SNP [dm3] 2R_12191179_SNP [dm6]	A	G	1.387e^-6	0.289	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
2R	8090564	2R_8090564_SNP [dm3] 2R_12203059_SNP [dm6]	G	A	1.671e^-6	0.313	INTERGENIC
3R	8988291	3R_8988291_INS [dm3] 3R_13162569_INS [dm6]	G	TGGA	2.168e^-6	0.347
3L	13349801	3L_13349801_SNP [dm3] 3L_13356701_SNP [dm6]	A	G	2.218e^-6	0.347	INTRON Nplp2
3R	9031928	3R_9031928_SNP [dm3] 3R_13206206_SNP [dm6]	C	T	2.602e^-6	0.375	INTERGENIC
3R	24625737	3R_24625737_SNP [dm3] 3R_28800015_SNP [dm6]	T	A	3.032e^-6	0.399	INTERGENIC
2R	8091181	2R_8091181_SNP [dm3] 2R_12203676_SNP [dm6]	A	C	3.320e^-6	0.399	INTERGENIC
2R	10576575	2R_10576575_SNP [dm3] 2R_14689070_SNP [dm6]	G	C	3.413e^-6	0.399	INTRON mspo
2R	8100594	2R_8100594_SNP [dm3] 2R_12213089_SNP [dm6]	G	A	3.858e^-6	0.399	UPSTREAM Sr-CII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8072884	2R_8072884_INS [dm3] 2R_12185379_INS [dm6]	G	GAGTTACGGGTGCCTCCGTT...	4.495e^-6	0.399	UTR_3_PRIME CG13175 & 1 other UPSTREAM Cyp6g1	regulatory region REDfly_CRMs
3R	9078765	3R_9078765_SNP [dm3] 3R_13253043_SNP [dm6]	C	T	4.551e^-6	0.399	INTRON Ace
2R	8090560	2R_8090560_SNP [dm3] 2R_12203055_SNP [dm6]	A	T	4.565e^-6	0.399	INTERGENIC
X	15551571	X_15551571_DEL [dm3] X_15657538_DEL [dm6]	TT	T	4.565e^-6	0.399	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	12132532	2R_12132532_SNP [dm3] 2R_16245027_SNP [dm6]	A	G	4.820e^-6	0.399	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10576602	2R_10576602_SNP [dm3] 2R_14689097_SNP [dm6]	G	T	4.895e^-6	0.399	INTRON mspo
2R	8098232	2R_8098232_SNP [dm3] 2R_12210727_SNP [dm6]	G	A	5.194e^-6	0.406	SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15551401	X_15551401_SNP [dm3] X_15657368_SNP [dm6]	C	A	6.138e^-6	0.46	INTERGENIC
3R	14146935	3R_14146935_SNP [dm3] 3R_18321213_SNP [dm6]	C	G	7.132e^-6	0.491	INTRON CG31235
X	15551480	X_15551480_SNP [dm3] X_15657447_SNP [dm6]	C	A	7.467e^-6	0.491	INTERGENIC
2R	8091158	2R_8091158_SNP [dm3] 2R_12203653_SNP [dm6]	G	C	7.996e^-6	0.491	INTERGENIC
3R	14146932	3R_14146932_SNP [dm3] 3R_18321210_SNP [dm6]	G	A	8.101e^-6	0.491	INTRON CG31235
3L	12346892	3L_12346892_SNP [dm3] 3L_12353792_SNP [dm6]	A	T	8.166e^-6	0.491	INTERGENIC
3R	9031918	3R_9031918_SNP [dm3] 3R_13206196_SNP [dm6]	C	A	8.414e^-6	0.491	INTERGENIC
2R	8095372	2R_8095372_INS [dm3] 2R_12207867_INS [dm6]	T	TT	8.562e^-6	0.491	DOWNSTREAM CR45276 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14146933	3R_14146933_SNP [dm3] 3R_18321211_SNP [dm6]	C	A	8.635e^-6	0.491	INTRON CG31235
3L	12346886	3L_12346886_SNP [dm3] 3L_12353786_SNP [dm6]	C	T	8.896e^-6	0.491	INTERGENIC
2L	9318682	2L_9318682_SNP [dm3] 2L_9318682_SNP [dm6]	G	A	9.944e^-6	0.533	INTERGENIC
3R	9031458	3R_9031458_SNP [dm3] 3R_13205736_SNP [dm6]	G	C	1.028e^-5	0.535	INTERGENIC
2R	8092269	2R_8092269_SNP [dm3] 2R_12204764_SNP [dm6]	T	A	1.184e^-5	0.6	INTERGENIC
3L	17243503	3L_17243503_SNP [dm3] 3L_17250403_SNP [dm6]	G	A	1.224e^-5	0.6	INTRON CR43870
2L	9966721	2L_9966721_SNP [dm3] 2L_9966721_SNP [dm6]	C	T	1.297e^-5	0.6	SYNONYMOUS_CODING Dref UPSTREAM RpL13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	18936651	3R_18936651_SNP [dm3] 3R_23110929_SNP [dm6]	G	A	1.301e^-5	0.6	INTRON CG13830
2L	7153581	2L_7153581_SNP [dm3] 2L_7153581_SNP [dm6]	G	C	1.313e^-5	0.6	INTRON Pvf3
3R	24667321	3R_24667321_SNP [dm3] 3R_28841599_SNP [dm6]	T	G	1.355e^-5	0.605	INTRON Apc	TF binding site BDTNP1_TFBS_twi
2R	10013361	2R_10013361_SNP [dm3] 2R_14125856_SNP [dm6]	A	C	1.429e^-5	0.623	INTRON Prosap
3R	14146927	3R_14146927_SNP [dm3] 3R_18321205_SNP [dm6]	A	T	1.524e^-5	0.634	INTRON CG31235
2R	17188582	2R_17188582_SNP [dm3] 2R_21301077_SNP [dm6]	A	T	1.545e^-5	0.634	UPSTREAM CG42672 INTRON CG42672
2R	17326783	2R_17326783_SNP [dm3] 2R_21439278_SNP [dm6]	C	A	1.556e^-5	0.634	INTRON Sdc
2L	8606105	2L_8606105_SNP [dm3] 2L_8606105_SNP [dm6]	G	C	1.657e^-5	0.661	INTRON Sema-1a
2R	10576572	2R_10576572_SNP [dm3] 2R_14689067_SNP [dm6]	A	G	1.742e^-5	0.669	INTRON mspo
2R	8100454	2R_8100454_SNP [dm3] 2R_12212949_SNP [dm6]	G	T	1.747e^-5	0.669	UPSTREAM Sr-CII INTERGENIC
2R	19675962	2R_19675962_SNP [dm3] 2R_23788439_SNP [dm6]	T	G	1.905e^-5	0.676	INTRON CG9850
2R	8092306	2R_8092306_SNP [dm3] 2R_12204801_SNP [dm6]	C	T	1.936e^-5	0.676	INTERGENIC
2L	12156636	2L_12156636_SNP [dm3] 2L_12156636_SNP [dm6]	G	A	1.946e^-5	0.676	INTRON CG31760
3R	17076358	3R_17076358_SNP [dm3] 3R_21250636_SNP [dm6]	T	G	1.955e^-5	0.676	INTRON ETHR
3L	10403943	3L_10403943_SNP [dm3] 3L_10410843_SNP [dm6]	A	T	2.006e^-5	0.676	DOWNSTREAM CR44543 INTERGENIC
2R	11143571	2R_11143571_SNP [dm3] 2R_15256066_SNP [dm6]	C	T	2.031e^-5	0.676	SPLICE_SITE_REGION scb INTRON scb	TF binding site mE1_TFBS_cad
2R	8091180	2R_8091180_SNP [dm3] 2R_12203675_SNP [dm6]	C	A	2.064e^-5	0.676	INTERGENIC
2R	8077706	2R_8077706_SNP [dm3] 2R_12190201_SNP [dm6]	G	T	2.066e^-5	0.676	SYNONYMOUS_CODING Cyp6g2 UPSTREAM Cyp6t3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13825555	X_13825555_SNP [dm3] X_13931522_SNP [dm6]	A	G	2.112e^-5	0.676	INTRON mamo
3R	21822107	3R_21822107_SNP [dm3] 3R_25996385_SNP [dm6]	C	T	2.128e^-5	0.676	NON_SYNONYMOUS_CODING CG43116 DOWNSTREAM Nf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5518333	3L_5518333_SNP [dm3] 3L_5525233_SNP [dm6]	G	T	2.166e^-5	0.676	INTRON Lkr
2R	10576605	2R_10576605_SNP [dm3] 2R_14689100_SNP [dm6]	A	T	2.210e^-5	0.676	INTRON mspo
X	14154195	X_14154195_SNP [dm3] X_14260162_SNP [dm6]	C	T	2.263e^-5	0.676	INTERGENIC
2L	4222485	2L_4222485_SNP [dm3] 2L_4222485_SNP [dm6]	G	C	2.272e^-5	0.676	UPSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	8988821	3R_8988821_SNP [dm3] 3R_13163099_SNP [dm6]	G	A	2.395e^-5	0.697	SYNONYMOUS_CODING timeout
2L	1485693	2L_1485693_SNP [dm3] 2L_1485693_SNP [dm6]	T	C	2.530e^-5	0.697	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	17623680	2R_17623680_SNP [dm3] 2R_21736175_SNP [dm6]	C	G	2.564e^-5	0.697	INTERGENIC
3L	12357247	3L_12357247_SNP [dm3] 3L_12364147_SNP [dm6]	T	A	2.601e^-5	0.697	INTERGENIC
3R	9124849	3R_9124849_SNP [dm3] 3R_13299127_SNP [dm6]	C	A	2.612e^-5	0.697	SYNONYMOUS_CODING CG8774 UTR_5_PRIME CG8774 DOWNSTREAM CG8773	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	8090749	2R_8090749_SNP [dm3] 2R_12203244_SNP [dm6]	T	A	2.638e^-5	0.697	INTERGENIC
2L	1485719	2L_1485719_INS [dm3] 2L_1485719_INS [dm6]	C	CTTC	2.654e^-5	0.697	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	13941175	2R_13941175_SNP [dm3] 2R_18053670_SNP [dm6]	T	G	2.678e^-5	0.697	NON_SYNONYMOUS_CODING CG10911
3R	18784574	3R_18784574_SNP [dm3] 3R_22958852_SNP [dm6]	T	G	2.710e^-5	0.697	INTRON klg	TF binding site mE1_TFBS_cad
2R	14189546	2R_14189546_SNP [dm3] 2R_18302041_SNP [dm6]	G	A	2.714e^-5	0.697	DOWNSTREAM CG14505 INTRON sbb
3R	8986186	3R_8986186_SNP [dm3] 3R_13160464_SNP [dm6]	T	A	2.763e^-5	0.7	INTRON timeout
X	4505991	X_4505991_SNP [dm3] X_4611958_SNP [dm6]	A	G	2.928e^-5	0.732	UPSTREAM CR32773 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9114055	3R_9114055_SNP [dm3] 3R_13288333_SNP [dm6]	A	T	3.089e^-5	0.759	INTRON CG15887	TF binding site mE1_TFBS_inv
2L	9965324	2L_9965324_SNP [dm3] 2L_9965324_SNP [dm6]	T	A	3.115e^-5	0.759	INTRON Dref	TF binding site mE1_TFBS_sens
2R	16474918	2R_16474918_SNP [dm3] 2R_20587413_SNP [dm6]	G	T	3.289e^-5	0.791	UPSTREAM bl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	24571403	3R_24571403_SNP [dm3] 3R_28745681_SNP [dm6]	G	A	3.440e^-5	0.8	UPSTREAM AstA-R2 INTERGENIC
2L	9965613	2L_9965613_SNP [dm3] 2L_9965613_SNP [dm6]	C	G	3.488e^-5	0.8	SYNONYMOUS_CODING Dref
2R	14733513	2R_14733513_SNP [dm3] 2R_18846008_SNP [dm6]	C	T	3.530e^-5	0.8	DOWNSTREAM CG15100 INTRON CG15099	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	10576591	2R_10576591_SNP [dm3] 2R_14689086_SNP [dm6]	T	C	3.664e^-5	0.8	INTRON mspo
3R	12345429	3R_12345429_SNP [dm3] 3R_16519707_SNP [dm6]	G	T	3.684e^-5	0.8	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	7449080	2R_7449080_SNP [dm3] 2R_11561575_SNP [dm6]	C	T	3.702e^-5	0.8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9318728	2L_9318728_SNP [dm3] 2L_9318728_SNP [dm6]	T	C	3.790e^-5	0.8	INTERGENIC
X	18138990	X_18138990_DEL [dm3] X_18244957_DEL [dm6]	GTGTG	G	3.849e^-5	0.8	EXON CR45607	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9033676	3R_9033676_SNP [dm3] 3R_13207954_SNP [dm6]	C	G	3.864e^-5	0.8	DOWNSTREAM CG8483 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	14883274	2R_14883274_SNP [dm3] 2R_18995769_SNP [dm6]	T	G	3.890e^-5	0.8	DOWNSTREAM snoRNA:abba-a INTRON tn
X	15551620	X_15551620_SNP [dm3] X_15657587_SNP [dm6]	G	C	3.891e^-5	0.8	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	8437848	3L_8437848_SNP [dm3] 3L_8444748_SNP [dm6]	C	T	3.908e^-5	0.8	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12345430	3R_12345430_SNP [dm3] 3R_16519708_SNP [dm6]	G	C	3.916e^-5	0.8	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	14154208	X_14154208_SNP [dm3] X_14260175_SNP [dm6]	C	A	3.966e^-5	0.8	INTERGENIC
3L	3187461	3L_3187461_SNP [dm3] 3L_3187461_SNP [dm6]	T	A	4.042e^-5	0.8	UPSTREAM CG14957 DOWNSTREAM CG42494 & 2 others INTERGENIC
3R	24246893	3R_24246893_SNP [dm3] 3R_28421171_SNP [dm6]	C	A	4.090e^-5	0.8	INTRON beat-VI
2L	12156666	2L_12156666_SNP [dm3] 2L_12156666_SNP [dm6]	A	G	4.134e^-5	0.8	INTRON CG31760
2R	19675961	2R_19675961_SNP [dm3] 2R_23788438_SNP [dm6]	C	T	4.193e^-5	0.8	INTRON CG9850
3R	23984927	3R_23984927_SNP [dm3] 3R_28159205_SNP [dm6]	A	G	4.193e^-5	0.8	INTRON CG34354
3R	12706605	3R_12706605_SNP [dm3] 3R_16880883_SNP [dm6]	C	T	4.232e^-5	0.8	INTRON iab-8
3R	9076306	3R_9076306_SNP [dm3] 3R_13250584_SNP [dm6]	T	A	4.297e^-5	0.8	INTRON Ace
3R	21098076	3R_21098076_SNP [dm3] 3R_25272354_SNP [dm6]	T	G	4.415e^-5	0.8	NON_SYNONYMOUS_CODING CG11891 UTR_3_PRIME CG11889 DOWNSTREAM CG11889	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24562919	3R_24562919_SNP [dm3] 3R_28737197_SNP [dm6]	T	C	4.468e^-5	0.8	UTR_3_PRIME AstA-R2 DOWNSTREAM AstA-R2
2R	8101879	2R_8101879_SNP [dm3] 2R_12214374_SNP [dm6]	G	A	4.476e^-5	0.8	UTR_3_PRIME CG13171
3R	12706610	3R_12706610_SNP [dm3] 3R_16880888_SNP [dm6]	C	G	4.500e^-5	0.8	INTRON iab-8
3L	12357421	3L_12357421_SNP [dm3] 3L_12364321_SNP [dm6]	G	A	4.510e^-5	0.8	INTERGENIC
2R	11143458	2R_11143458_SNP [dm3] 2R_15255953_SNP [dm6]	A	G	4.583e^-5	0.8	NON_SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10585642	2R_10585642_SNP [dm3] 2R_14698137_SNP [dm6]	A	T	4.647e^-5	0.8	INTRON mspo
2L	2800469	2L_2800469_INS [dm3] 2L_2800469_INS [dm6]	A	AA	4.648e^-5	0.8	UPSTREAM Syt1 INTERGENIC
2R	13132036	2R_13132036_SNP [dm3] 2R_17244531_SNP [dm6]	T	A	4.674e^-5	0.8	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7875856	2L_7875856_INS [dm3] 2L_7875856_INS [dm6]	T	TT	4.692e^-5	0.8	INTRON spz3
3L	15052326	3L_15052326_DEL [dm3] 3L_15059226_DEL [dm6]	TCAT	T	4.722e^-5	0.8	INTRON Sytbeta
2L	9966604	2L_9966604_SNP [dm3] 2L_9966604_SNP [dm6]	G	A	4.736e^-5	0.8	SYNONYMOUS_CODING Dref UPSTREAM RpL13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	16489705	2L_16489705_SNP [dm3] 2L_16489705_SNP [dm6]	A	G	4.843e^-5	0.801	NON_SYNONYMOUS_CODING CG4580 DOWNSTREAM CR44994	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	15703584	2R_15703584_SNP [dm3] 2R_19816079_SNP [dm6]	T	C	4.957e^-5	0.801	UTR_3_PRIME Obp56h
3R	9076295	3R_9076295_DEL [dm3] 3R_13250573_DEL [dm6]	CGATC	C	5.009e^-5	0.801	INTRON Ace
2R	10851233	2R_10851233_SNP [dm3] 2R_14963728_SNP [dm6]	T	C	5.025e^-5	0.801	START_GAINED ckn UTR_5_PRIME ckn UPSTREAM aPKC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	9391180	3L_9391180_SNP [dm3] 3L_9398080_SNP [dm6]	T	A	5.056e^-5	0.801	INTRON CG4080	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
2R	8101919	2R_8101919_SNP [dm3] 2R_12214414_SNP [dm6]	T	C	5.063e^-5	0.801	DOWNSTREAM CG13171 INTERGENIC
3R	8986185	3R_8986185_SNP [dm3] 3R_13160463_SNP [dm6]	G	A	5.074e^-5	0.801	INTRON timeout
2L	1485708	2L_1485708_SNP [dm3] 2L_1485708_SNP [dm6]	C	T	5.084e^-5	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	14571724	3L_14571724_SNP [dm3] 3L_14578624_SNP [dm6]	C	G	5.216e^-5	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	8090624	2R_8090624_SNP [dm3] 2R_12203119_SNP [dm6]	G	A	5.237e^-5	0.806	INTERGENIC
3L	16426421	3L_16426421_SNP [dm3] 3L_16433321_SNP [dm6]	C	A	5.244e^-5	0.806	INTRON CG33158 & 1 other
2R	8090744	2R_8090744_SNP [dm3] 2R_12203239_SNP [dm6]	A	G	5.327e^-5	0.812	INTERGENIC
2R	10083055	2R_10083055_SNP [dm3] 2R_14195550_SNP [dm6]	G	T	5.542e^-5	0.838	SYNONYMOUS_CODING CG30069	TF binding site BDTNP1_TFBS_twi
3R	8986293	3R_8986293_SNP [dm3] 3R_13160571_SNP [dm6]	T	C	5.631e^-5	0.84	INTRON timeout
3R	14982500	3R_14982500_SNP [dm3] 3R_19156778_SNP [dm6]	C	A	5.643e^-5	0.84	UTR_5_PRIME CG11779 UPSTREAM nos INTRON CG11779	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	8090739	2R_8090739_SNP [dm3] 2R_12203234_SNP [dm6]	G	A	5.732e^-5	0.843	INTERGENIC
2R	8101945	2R_8101945_SNP [dm3] 2R_12214440_SNP [dm6]	G	T	5.798e^-5	0.843	DOWNSTREAM CG13171 INTERGENIC
2R	8090760	2R_8090760_SNP [dm3] 2R_12203255_SNP [dm6]	C	T	5.800e^-5	0.843	INTERGENIC
X	15551392	X_15551392_SNP [dm3] X_15657359_SNP [dm6]	C	G	5.904e^-5	0.848	INTERGENIC
X	15997988	X_15997988_INS [dm3] X_16103955_INS [dm6]	T	TCT	5.923e^-5	0.848	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	13349812	3L_13349812_SNP [dm3] 3L_13356712_SNP [dm6]	G	C	6.002e^-5	0.849	INTRON Nplp2
2L	9318726	2L_9318726_SNP [dm3] 2L_9318726_SNP [dm6]	G	A	6.020e^-5	0.849	INTERGENIC
3L	13165387	3L_13165387_SNP [dm3] 3L_13172287_SNP [dm6]	A	T	6.167e^-5	0.849	INTERGENIC
2L	9468250	2L_9468250_SNP [dm3] 2L_9468250_SNP [dm6]	C	G	6.196e^-5	0.849	INTERGENIC
2R	8101969	2R_8101969_INS [dm3] 2R_12214464_INS [dm6]	A	ATGTA	6.281e^-5	0.849	DOWNSTREAM CG13171 INTERGENIC
3R	3692759	3R_3692759_SNP [dm3] 3R_7867037_SNP [dm6]	C	T	6.299e^-5	0.849	DOWNSTREAM CG17816 INTRON CG17816
2L	6334848	2L_6334848_SNP [dm3] 2L_6334848_SNP [dm6]	A	C	6.305e^-5	0.849	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2675337	2L_2675337_SNP [dm3] 2L_2675337_SNP [dm6]	A	G	6.306e^-5	0.849	INTERGENIC	TF binding site mE1_TFBS_cad
3R	23545583	3R_23545583_SNP [dm3] 3R_27719861_SNP [dm6]	T	C	6.335e^-5	0.849	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16546307	3L_16546307_SNP [dm3] 3L_16553207_SNP [dm6]	A	C	6.495e^-5	0.864	INTERGENIC
X	12590531	X_12590531_SNP [dm3] X_12696498_SNP [dm6]	A	G	6.674e^-5	0.868	INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14990668	3R_14990668_SNP [dm3] 3R_19164946_SNP [dm6]	T	G	6.675e^-5	0.868	INTRON sqz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	12357488	3L_12357488_SNP [dm3] 3L_12364388_SNP [dm6]	C	T	6.738e^-5	0.868	INTERGENIC
3R	12669758	3R_12669758_SNP [dm3] 3R_16844036_SNP [dm6]	A	C	6.748e^-5	0.868	INTRON iab-8
2R	18036861	2R_18036861_SNP [dm3] 2R_22149356_SNP [dm6]	G	A	6.775e^-5	0.868	INTRON a
X	14154154	X_14154154_INS [dm3] X_14260121_INS [dm6]	T	TCTGAATCAAAAATGCTTGT...	6.891e^-5	0.868	INTERGENIC
2R	8093874	2R_8093874_SNP [dm3] 2R_12206369_SNP [dm6]	G	A	6.962e^-5	0.868	EXON CR45276	TF binding site mE1_TFBS_cad
2R	8101905	2R_8101905_SNP [dm3] 2R_12214400_SNP [dm6]	T	G	7.052e^-5	0.868	DOWNSTREAM CG13171 INTERGENIC
2R	8092572	2R_8092572_SNP [dm3] 2R_12205067_SNP [dm6]	C	T	7.061e^-5	0.868	INTERGENIC
2R	15670824	2R_15670824_DEL [dm3] 2R_19783319_DEL [dm6]	TAGGCAG	T	7.255e^-5	0.868	UPSTREAM CR45231 DOWNSTREAM Obp56g INTERGENIC
2R	14983874	2R_14983874_DEL [dm3] 2R_19096369_DEL [dm6]	TT	T	7.275e^-5	0.868	UPSTREAM Ir56a INTRON 5-HT1A
X	9211090	X_9211090_SNP [dm3] X_9317057_SNP [dm6]	A	T	7.275e^-5	0.868	DOWNSTREAM c12.1 INTERGENIC
3R	21999331	3R_21999331_SNP [dm3] 3R_26173609_SNP [dm6]	A	T	7.280e^-5	0.868	INTRON CG31323
2L	9318668	2L_9318668_SNP [dm3] 2L_9318668_SNP [dm6]	C	G	7.297e^-5	0.868	INTERGENIC
2R	15703888	2R_15703888_INS [dm3] 2R_19816383_INS [dm6]	A	AGTTG	7.324e^-5	0.868	DOWNSTREAM Obp56h INTERGENIC
2R	8091164	2R_8091164_SNP [dm3] 2R_12203659_SNP [dm6]	G	A	7.423e^-5	0.868	INTERGENIC
2R	13940944	2R_13940944_INS [dm3] 2R_18053439_INS [dm6]	C	CGA	7.460e^-5	0.868	INTRON CG10911
3L	8437847	3L_8437847_SNP [dm3] 3L_8444747_SNP [dm6]	A	G	7.502e^-5	0.868	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8093965	2R_8093965_SNP [dm3] 2R_12206460_SNP [dm6]	G	C	7.524e^-5	0.868	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	6336548	X_6336548_DEL [dm3] X_6442515_DEL [dm6]	CCAAACC	C	7.706e^-5	0.868	INTRON CG42340
3L	16546517	3L_16546517_SNP [dm3] 3L_16553417_SNP [dm6]	T	A	7.709e^-5	0.868	INTERGENIC
2R	8090555	2R_8090555_DEL [dm3] 2R_12203050_DEL [dm6]	AAAA	A	7.721e^-5	0.868	INTERGENIC
2L	16489901	2L_16489901_SNP [dm3] 2L_16489901_SNP [dm6]	C	T	7.731e^-5	0.868	NON_SYNONYMOUS_CODING CG4580 DOWNSTREAM CR44994	TF binding site mE1_TFBS_HSA
2R	10851250	2R_10851250_SNP [dm3] 2R_14963745_SNP [dm6]	A	G	7.755e^-5	0.868	UTR_5_PRIME ckn UPSTREAM aPKC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	4339206	2L_4339206_SNP [dm3] 2L_4339206_SNP [dm6]	G	C	7.756e^-5	0.868	INTRON Atet	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	12571689	2R_12571689_SNP [dm3] 2R_16684184_SNP [dm6]	G	C	7.777e^-5	0.868	UPSTREAM CG30463 INTRON CG30463
3L	12346841	3L_12346841_SNP [dm3] 3L_12353741_SNP [dm6]	G	A	7.777e^-5	0.868	INTERGENIC
2R	11143560	2R_11143560_SNP [dm3] 2R_15256055_SNP [dm6]	G	A	7.863e^-5	0.868	NON_SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad
X	21371609	X_21371609_SNP [dm3] X_21500582_SNP [dm6]	A	G	7.900e^-5	0.868	INTRON CR45082
3R	9836548	3R_9836548_SNP [dm3] 3R_14010826_SNP [dm6]	T	C	7.915e^-5	0.868	INTRON rdx
X	11844826	X_11844826_SNP [dm3] X_11950793_SNP [dm6]	G	C	8.060e^-5	0.869	INTRON cac
2L	8645910	2L_8645910_SNP [dm3] 2L_8645910_SNP [dm6]	T	C	8.093e^-5	0.869	INTRON Sema-1a
2L	9318698	2L_9318698_SNP [dm3] 2L_9318698_SNP [dm6]	T	A	8.242e^-5	0.869	INTERGENIC
3R	21075023	3R_21075023_SNP [dm3] 3R_25249301_SNP [dm6]	C	A	8.324e^-5	0.869	UPSTREAM Nup358 DOWNSTREAM Nup37 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
X	14185674	X_14185674_SNP [dm3] X_14291641_SNP [dm6]	A	C	8.344e^-5	0.869	INTERGENIC
3L	12355120	3L_12355120_SNP [dm3] 3L_12362020_SNP [dm6]	A	T	8.353e^-5	0.869	INTERGENIC
2R	16539667	2R_16539667_SNP [dm3] 2R_20652162_SNP [dm6]	T	C	8.363e^-5	0.869	DOWNSTREAM CG16799 INTRON Lrt
3R	9031455	3R_9031455_INS [dm3] 3R_13205733_INS [dm6]	C	CTACGG	8.364e^-5	0.869	INTERGENIC
2L	14514948	2L_14514948_SNP [dm3] 2L_14514948_SNP [dm6]	T	C	8.414e^-5	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9318748	2L_9318748_SNP [dm3] 2L_9318748_SNP [dm6]	T	C	8.467e^-5	0.869	INTERGENIC
X	14666486	X_14666486_SNP [dm3] X_14772453_SNP [dm6]	G	T	8.590e^-5	0.869	INTERGENIC
3R	21098148	3R_21098148_SNP [dm3] 3R_25272426_SNP [dm6]	C	T	8.678e^-5	0.869	NON_SYNONYMOUS_CODING CG11891 UTR_3_PRIME CG11889 DOWNSTREAM CG11889	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8094113	2R_8094113_SNP [dm3] 2R_12206608_SNP [dm6]	A	G	8.750e^-5	0.869	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	15001814	X_15001814_SNP [dm3] X_15107781_SNP [dm6]	T	C	8.761e^-5	0.869	INTRON Rab3-GEF
2R	8105491	2R_8105491_SNP [dm3] 2R_12217986_SNP [dm6]	A	C	8.872e^-5	0.869	INTERGENIC
3L	17243857	3L_17243857_SNP [dm3] 3L_17250757_SNP [dm6]	T	C	9.008e^-5	0.869	INTRON CR43870
2R	3419892	2R_3419892_SNP [dm3] 2R_7532387_SNP [dm6]	G	C	9.008e^-5	0.869	DOWNSTREAM CR44209 INTRON Drat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24234890	3R_24234890_SNP [dm3] 3R_28409168_SNP [dm6]	A	C	9.018e^-5	0.869	INTERGENIC
2R	8090765	2R_8090765_SNP [dm3] 2R_12203260_SNP [dm6]	C	T	9.052e^-5	0.869	INTERGENIC
3R	24547909	3R_24547909_SNP [dm3] 3R_28722187_SNP [dm6]	G	T	9.103e^-5	0.869	INTRON htt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9076302	3R_9076302_SNP [dm3] 3R_13250580_SNP [dm6]	A	T	9.142e^-5	0.869	INTRON Ace
2R	8092581	2R_8092581_SNP [dm3] 2R_12205076_SNP [dm6]	C	T	9.188e^-5	0.869	INTERGENIC
X	16674396	X_16674396_SNP [dm3] X_16780363_SNP [dm6]	C	G	9.215e^-5	0.869	INTRON if	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24555623	3R_24555623_SNP [dm3] 3R_28729901_SNP [dm6]	A	T	9.215e^-5	0.869	INTRON htt
3R	9175058	3R_9175058_DEL [dm3] 3R_13349336_DEL [dm6]	AA	A	9.298e^-5	0.869	INTERGENIC
3R	22983234	3R_22983234_SNP [dm3] 3R_27157512_SNP [dm6]	A	T	9.359e^-5	0.869	UTR_3_PRIME Men-b UPSTREAM grass	TF binding site mE1_TFBS_Trl
2L	9318687	2L_9318687_SNP [dm3] 2L_9318687_SNP [dm6]	C	T	9.488e^-5	0.869	INTERGENIC
2R	8092527	2R_8092527_SNP [dm3] 2R_12205022_SNP [dm6]	C	T	9.534e^-5	0.869	INTERGENIC
2L	9318774	2L_9318774_SNP [dm3] 2L_9318774_SNP [dm6]	C	T	9.566e^-5	0.869	INTERGENIC
3R	9069658	3R_9069658_SNP [dm3] 3R_13243936_SNP [dm6]	C	G	9.578e^-5	0.869	NON_SYNONYMOUS_CODING Ace
3R	9216135	3R_9216135_SNP [dm3] 3R_13390413_SNP [dm6]	T	A	9.745e^-5	0.869	INTRON CCHa2
2L	3839478	2L_3839478_SNP [dm3] 2L_3839478_SNP [dm6]	A	T	9.745e^-5	0.869	DOWNSTREAM slp2 INTERGENIC	regulatory region REDfly_CRMs
2L	3746303	2L_3746303_SNP [dm3] 2L_3746303_SNP [dm6]	A	C	9.766e^-5	0.869	SYNONYMOUS_CODING CG10019	TF binding site mE1_TFBS_chinmo
2L	9318654	2L_9318654_SNP [dm3] 2L_9318654_SNP [dm6]	A	G	9.767e^-5	0.869	INTERGENIC
3R	14978887	3R_14978887_SNP [dm3] 3R_19153165_SNP [dm6]	T	C	9.830e^-5	0.869	DOWNSTREAM CG11779 INTRON CG5835
3L	10771842	3L_10771842_SNP [dm3] 3L_10778742_SNP [dm6]	A	C	9.843e^-5	0.869	INTERGENIC
3L	2147518	3L_2147518_SNP [dm3] 3L_2147518_SNP [dm6]	C	A	9.904e^-5	0.869	INTRON zormin
2L	9967900	2L_9967900_SNP [dm3] 2L_9967900_SNP [dm6]	T	C	9.972e^-5	0.869	UPSTREAM Dref INTRON RpL13	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	10268439	2L_10268439_SNP [dm3] 2L_10268439_SNP [dm6]	G	C	9.993e^-5	0.869	UTR_3_PRIME CG4953 UPSTREAM CG4957
3R	17030391	3R_17030391_SNP [dm3] 3R_21204669_SNP [dm6]	A	T	1.003e^-4	0.869	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	17030765	3R_17030765_SNP [dm3] 3R_21205043_SNP [dm6]	T	C	1.004e^-4	0.869	UTR_5_PRIME SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	13336395	X_13336395_SNP [dm3] X_13442362_SNP [dm6]	C	T	1.006e^-4	0.869	INTERGENIC
2R	8095118	2R_8095118_SNP [dm3] 2R_12207613_SNP [dm6]	T	G	1.007e^-4	0.869	DOWNSTREAM CR45276 INTERGENIC	TF binding site mE1_TFBS_cad
2R	8101160	2R_8101160_SNP [dm3] 2R_12213655_SNP [dm6]	G	T	1.007e^-4	0.869	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	18990840	3R_18990840_SNP [dm3] 3R_23165118_SNP [dm6]	A	G	1.007e^-4	0.869	INTERGENIC
2L	14242662	2L_14242662_SNP [dm3] 2L_14242662_SNP [dm6]	T	C	1.012e^-4	0.869	DOWNSTREAM CR44216 INTERGENIC
3R	24613042	3R_24613042_SNP [dm3] 3R_28787320_SNP [dm6]	A	C	1.018e^-4	0.869	INTERGENIC
2L	15326839	2L_15326839_SNP [dm3] 2L_15326839_SNP [dm6]	G	T	1.025e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2473417	X_2473417_SNP [dm3] X_2579384_SNP [dm6]	A	G	1.031e^-4	0.869	SYNONYMOUS_CODING Vha36-3 DOWNSTREAM Pdfr
2R	8084645	2R_8084645_SNP [dm3] 2R_12197140_SNP [dm6]	G	A	1.038e^-4	0.869	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
2L	9672035	2L_9672035_SNP [dm3] 2L_9672035_SNP [dm6]	T	G	1.040e^-4	0.869	UPSTREAM CR44150 INTERGENIC
2R	17323312	2R_17323312_SNP [dm3] 2R_21435807_SNP [dm6]	C	T	1.041e^-4	0.869	INTRON Sdc
3R	17030686	3R_17030686_SNP [dm3] 3R_21204964_SNP [dm6]	T	C	1.045e^-4	0.869	UTR_5_PRIME SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9965589	2L_9965589_SNP [dm3] 2L_9965589_SNP [dm6]	A	T	1.052e^-4	0.869	SYNONYMOUS_CODING Dref
2L	1485648	2L_1485648_DEL [dm3] 2L_1485648_DEL [dm6]	GATAAGTACTTC...	T	1.053e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	8585956	2R_8585956_INS [dm3] 2R_12698451_INS [dm6]	A	AGCTCCA	1.059e^-4	0.869	INTERGENIC
3R	9617491	3R_9617491_SNP [dm3] 3R_13791769_SNP [dm6]	C	T	1.064e^-4	0.869	INTERGENIC
2R	10577060	2R_10577060_SNP [dm3] 2R_14689555_SNP [dm6]	C	T	1.067e^-4	0.869	INTRON mspo
2R	10851299	2R_10851299_SNP [dm3] 2R_14963794_SNP [dm6]	C	A	1.069e^-4	0.869	UTR_5_PRIME ckn UPSTREAM aPKC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	9103693	3R_9103693_SNP [dm3] 3R_13277971_SNP [dm6]	T	A	1.087e^-4	0.869	INTERGENIC
X	14154236	X_14154236_SNP [dm3] X_14260203_SNP [dm6]	C	T	1.089e^-4	0.869	INTERGENIC
3R	9076308	3R_9076308_SNP [dm3] 3R_13250586_SNP [dm6]	T	C	1.095e^-4	0.869	INTRON Ace
2L	10149091	2L_10149091_SNP [dm3] 2L_10149091_SNP [dm6]	A	T	1.098e^-4	0.869	INTRON CG44153 & 1 other
3R	3692109	3R_3692109_SNP [dm3] 3R_7866387_SNP [dm6]	A	G	1.102e^-4	0.869	INTRON CG17816
2L	9309770	2L_9309770_SNP [dm3] 2L_9309770_SNP [dm6]	C	T	1.103e^-4	0.869	INTERGENIC
2L	15096959	2L_15096959_SNP [dm3] 2L_15096959_SNP [dm6]	T	A	1.105e^-4	0.869	DOWNSTREAM CG15270 INTERGENIC
2L	15496427	2L_15496427_SNP [dm3] 2L_15496427_SNP [dm6]	A	G	1.106e^-4	0.869	INTERGENIC
2L	15371088	2L_15371088_SNP [dm3] 2L_15371088_SNP [dm6]	T	A	1.112e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15326827	2L_15326827_SNP [dm3] 2L_15326827_SNP [dm6]	T	A	1.121e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18989396	X_18989396_SNP [dm3] X_19095363_SNP [dm6]	T	A	1.135e^-4	0.869	INTERGENIC
3R	21417383	3R_21417383_SNP [dm3] 3R_25591661_SNP [dm6]	G	A	1.141e^-4	0.869	UTR_3_PRIME ymp INTRON msi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	5704508	3R_5704508_SNP [dm3] 3R_9878786_SNP [dm6]	T	G	1.148e^-4	0.869	UPSTREAM CR45029 INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8986217	3R_8986217_SNP [dm3] 3R_13160495_SNP [dm6]	G	T	1.157e^-4	0.869	INTRON timeout
3R	22453624	3R_22453624_DEL [dm3] 3R_26627902_DEL [dm6]	TT	T	1.167e^-4	0.869	UTR_3_PRIME TwdlK
2R	1079738	2R_1079738_SNP [dm3] 2R_5192233_SNP [dm6]	A	G	1.169e^-4	0.869	INTRON Nipped-A	transposable element FlyBase
2L	2675309	2L_2675309_SNP [dm3] 2L_2675309_SNP [dm6]	A	C	1.173e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16019083	3L_16019083_SNP [dm3] 3L_16025983_SNP [dm6]	G	T	1.196e^-4	0.869	INTRON Notum	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12462020	3L_12462020_SNP [dm3] 3L_12468920_SNP [dm6]	T	A	1.198e^-4	0.869	UPSTREAM eyg DOWNSTREAM CG32102 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
2R	1610992	2R_1610992_SNP [dm3] 2R_5723487_SNP [dm6]	G	T	1.198e^-4	0.869	INTRON ap	TF binding site mE1_TFBS_kn
2R	15703554	2R_15703554_SNP [dm3] 2R_19816049_SNP [dm6]	C	G	1.200e^-4	0.869	UTR_3_PRIME Obp56h
3L	10897685	3L_10897685_SNP [dm3] 3L_10904585_SNP [dm6]	C	T	1.200e^-4	0.869	INTERGENIC
X	15551437	X_15551437_SNP [dm3] X_15657404_SNP [dm6]	A	T	1.221e^-4	0.869	INTERGENIC
X	6110474	X_6110474_SNP [dm3] X_6216441_SNP [dm6]	C	A	1.224e^-4	0.869	DOWNSTREAM Btd INTERGENIC
3L	11518974	3L_11518974_SNP [dm3] 3L_11525874_SNP [dm6]	G	A	1.234e^-4	0.869	INTRON Mob2
2R	19138670	2R_19138670_SNP [dm3] 2R_23251147_SNP [dm6]	A	G	1.235e^-4	0.869	INTERGENIC
3R	12756313	3R_12756313_SNP [dm3] 3R_16930591_SNP [dm6]	G	A	1.241e^-4	0.869	INTRON Abd-B
3R	9043065	3R_9043065_SNP [dm3] 3R_13217343_SNP [dm6]	A	G	1.246e^-4	0.869	INTERGENIC
X	13351855	X_13351855_SNP [dm3] X_13457822_SNP [dm6]	A	G	1.256e^-4	0.869	UPSTREAM CG34324 INTRON Neto
2R	13939825	2R_13939825_DEL [dm3] 2R_18052320_DEL [dm6]	TA	C	1.262e^-4	0.869	UPSTREAM Muc55B DOWNSTREAM CG10911 INTERGENIC
3R	18936635	3R_18936635_SNP [dm3] 3R_23110913_SNP [dm6]	G	T	1.266e^-4	0.869	INTRON CG13830
3R	24293332	3R_24293332_SNP [dm3] 3R_28467610_SNP [dm6]	G	A	1.266e^-4	0.869	INTRON beat-VI
3R	26575911	3R_26575911_DEL [dm3] 3R_30750189_DEL [dm6]	TCCTGTTT	T	1.269e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17623689	2R_17623689_SNP [dm3] 2R_21736184_SNP [dm6]	T	A	1.271e^-4	0.869	INTERGENIC
X	8634354	X_8634354_SNP [dm3] X_8740321_SNP [dm6]	T	C	1.272e^-4	0.869	INTERGENIC
2R	3419861	2R_3419861_INS [dm3] 2R_7532356_INS [dm6]	T	TAGCTGGCTATTGG...	1.285e^-4	0.869	DOWNSTREAM CR44209 INTRON Drat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20444143	X_20444143_SNP [dm3] X_20573116_SNP [dm6]	G	T	1.292e^-4	0.869	INTERGENIC
3R	6941015	3R_6941015_SNP [dm3] 3R_11115293_SNP [dm6]	T	C	1.293e^-4	0.869	SYNONYMOUS_CODING CG6629
X	14154204	X_14154204_SNP [dm3] X_14260171_SNP [dm6]	T	G	1.294e^-4	0.869	INTERGENIC
2L	1848221	2L_1848221_SNP [dm3] 2L_1848221_SNP [dm6]	G	T	1.297e^-4	0.869	SPLICE_SITE_REGION wry INTRON wry
3R	12577111	3R_12577111_SNP [dm3] 3R_16751389_SNP [dm6]	T	C	1.320e^-4	0.869	UPSTREAM CG31275 INTRON bxd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15703764	2R_15703764_SNP [dm3] 2R_19816259_SNP [dm6]	A	C	1.321e^-4	0.869	DOWNSTREAM Obp56h INTERGENIC
3R	6131472	3R_6131472_SNP [dm3] 3R_10305750_SNP [dm6]	A	G	1.322e^-4	0.869	SYNONYMOUS_CODING CG43143
3R	3591921	3R_3591921_SNP [dm3] 3R_7766199_SNP [dm6]	A	C	1.323e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_inv
3R	24265418	3R_24265418_SNP [dm3] 3R_28439696_SNP [dm6]	T	G	1.334e^-4	0.869	INTRON beat-VI
3R	24290837	3R_24290837_SNP [dm3] 3R_28465115_SNP [dm6]	A	T	1.334e^-4	0.869	INTRON beat-VI
3R	24293320	3R_24293320_SNP [dm3] 3R_28467598_SNP [dm6]	G	A	1.334e^-4	0.869	INTRON beat-VI
3R	24339504	3R_24339504_SNP [dm3] 3R_28513782_SNP [dm6]	T	C	1.334e^-4	0.869	INTRON Dhc98D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1536445	2R_1536445_SNP [dm3] 2R_5648940_SNP [dm6]	C	T	1.336e^-4	0.869	INTRON CG11665
X	11343995	X_11343995_SNP [dm3] X_11449962_SNP [dm6]	G	A	1.337e^-4	0.869	INTRON Evi5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24235181	3R_24235181_SNP [dm3] 3R_28409459_SNP [dm6]	C	T	1.345e^-4	0.869	INTERGENIC
3R	2808548	3R_2808548_SNP [dm3] 3R_6982826_SNP [dm6]	C	T	1.364e^-4	0.869	INTRON Antp
3R	21822145	3R_21822145_SNP [dm3] 3R_25996423_SNP [dm6]	C	T	1.367e^-4	0.869	SYNONYMOUS_CODING CG43116 DOWNSTREAM Nf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	24234982	3R_24234982_SNP [dm3] 3R_28409260_SNP [dm6]	A	T	1.372e^-4	0.869	INTERGENIC
2L	10253556	2L_10253556_SNP [dm3] 2L_10253556_SNP [dm6]	C	T	1.379e^-4	0.869	SYNONYMOUS_CODING Ror
X	12731468	X_12731468_SNP [dm3] X_12837435_SNP [dm6]	A	C	1.380e^-4	0.869	INTRON Pde9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9607115	3R_9607115_SNP [dm3] 3R_13781393_SNP [dm6]	T	C	1.390e^-4	0.869	UPSTREAM Dip-B DOWNSTREAM CG9288 & 1 other INTRON CG9286	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15096952	2L_15096952_SNP [dm3] 2L_15096952_SNP [dm6]	T	C	1.393e^-4	0.869	DOWNSTREAM CG15270 INTERGENIC
3R	9607504	3R_9607504_SNP [dm3] 3R_13781782_SNP [dm6]	A	G	1.396e^-4	0.869	SYNONYMOUS_CODING CG9286 UPSTREAM Dip-B DOWNSTREAM CG9288 & 1 other	TF binding site mE1_TFBS_HSA
2R	15703767	2R_15703767_SNP [dm3] 2R_19816262_SNP [dm6]	T	A	1.397e^-4	0.869	DOWNSTREAM Obp56h INTERGENIC
3R	24296988	3R_24296988_SNP [dm3] 3R_28471266_SNP [dm6]	C	A	1.399e^-4	0.869	INTRON beat-VI
3R	24455926	3R_24455926_SNP [dm3] 3R_28630204_SNP [dm6]	C	T	1.402e^-4	0.869	INTRON CG10011	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	24512788	3R_24512788_SNP [dm3] 3R_28687066_SNP [dm6]	G	A	1.402e^-4	0.869	INTRON CG9990	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	24533524	3R_24533524_SNP [dm3] 3R_28707802_SNP [dm6]	T	A	1.402e^-4	0.869	INTRON htt	TF binding site mE1_TFBS_chinmo
3L	5002002	3L_5002002_SNP [dm3] 3L_5002002_SNP [dm6]	G	A	1.404e^-4	0.869	INTRON Con	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12528990	3L_12528990_SNP [dm3] 3L_12535890_SNP [dm6]	C	A	1.406e^-4	0.869	SYNONYMOUS_CODING CG4069 DOWNSTREAM CG10688	TF binding site mE1_TFBS_cad
3R	24476558	3R_24476558_SNP [dm3] 3R_28650836_SNP [dm6]	A	T	1.411e^-4	0.869	UPSTREAM CG31050 INTERGENIC
3R	22990946	3R_22990946_SNP [dm3] 3R_27165224_SNP [dm6]	C	A	1.412e^-4	0.869	NON_SYNONYMOUS_CODING CG34293 UPSTREAM spn-D DOWNSTREAM ppk31	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17323545	2R_17323545_SNP [dm3] 2R_21436040_SNP [dm6]	C	T	1.416e^-4	0.869	INTRON Sdc
2R	13947550	2R_13947550_SNP [dm3] 2R_18060045_SNP [dm6]	C	A	1.426e^-4	0.869	UPSTREAM CR45314 INTERGENIC
2L	6449908	2L_6449908_SNP [dm3] 2L_6449908_SNP [dm6]	G	A	1.433e^-4	0.869	SYNONYMOUS_CODING retm
3L	8828653	3L_8828653_SNP [dm3] 3L_8835553_SNP [dm6]	C	T	1.436e^-4	0.869	UPSTREAM CG32026 INTRON dally	TF binding site mE1_TFBS_Kr
2R	20571043	2R_20571043_SNP [dm3] 2R_24683520_SNP [dm6]	G	A	1.446e^-4	0.869	INTRON Mmp1
3R	24234977	3R_24234977_SNP [dm3] 3R_28409255_SNP [dm6]	T	C	1.447e^-4	0.869	INTERGENIC
3L	7486823	3L_7486823_SNP [dm3] 3L_7493723_SNP [dm6]	T	C	1.448e^-4	0.869	SYNONYMOUS_CODING Cyp4d8 DOWNSTREAM Cyp316a1
3R	5825499	3R_5825499_SNP [dm3] 3R_9999777_SNP [dm6]	T	A	1.451e^-4	0.869	UTR_3_PRIME CG5359 DOWNSTREAM CG5359 INTRON Spn85F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9018948	3L_9018948_DEL [dm3] 3L_9025848_DEL [dm6]	TT	T	1.452e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22983233	3R_22983233_SNP [dm3] 3R_27157511_SNP [dm6]	T	C	1.452e^-4	0.869	UTR_3_PRIME Men-b UPSTREAM grass	TF binding site mE1_TFBS_Trl
3R	9154778	3R_9154778_SNP [dm3] 3R_13329056_SNP [dm6]	A	T	1.458e^-4	0.869	DOWNSTREAM PK2-R2 INTERGENIC
3L	10403963	3L_10403963_SNP [dm3] 3L_10410863_SNP [dm6]	T	C	1.465e^-4	0.869	DOWNSTREAM CR44543 INTERGENIC
X	14226122	X_14226122_SNP [dm3] X_14332089_SNP [dm6]	A	C	1.469e^-4	0.869	INTRON dpr8	TF binding site mE1_TFBS_chinmo
3R	23178000	3R_23178000_SNP [dm3] 3R_27352278_SNP [dm6]	T	G	1.472e^-4	0.869	INTRON CG42534
3R	8975566	3R_8975566_SNP [dm3] 3R_13149844_SNP [dm6]	T	C	1.479e^-4	0.869	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3L	17201230	3L_17201230_SNP [dm3] 3L_17208130_SNP [dm6]	G	A	1.479e^-4	0.869	INTRON Rbp6
3R	24565847	3R_24565847_SNP [dm3] 3R_28740125_SNP [dm6]	C	T	1.480e^-4	0.869	INTRON AstA-R2
3R	16821132	3R_16821132_SNP [dm3] 3R_20995410_SNP [dm6]	C	G	1.482e^-4	0.869	INTRON Calx	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15539063	2L_15539063_SNP [dm3] 2L_15539063_SNP [dm6]	T	C	1.483e^-4	0.869	INTERGENIC
X	10354580	X_10354580_SNP [dm3] X_10460547_SNP [dm6]	A	T	1.490e^-4	0.869	UPSTREAM Or9a & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13940658	2R_13940658_SNP [dm3] 2R_18053153_SNP [dm6]	A	T	1.491e^-4	0.869	SYNONYMOUS_CODING CG10911	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19021626	X_19021626_SNP [dm3] X_19127593_SNP [dm6]	G	C	1.499e^-4	0.869	UPSTREAM tgy INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24290797	3R_24290797_SNP [dm3] 3R_28465075_SNP [dm6]	G	C	1.503e^-4	0.869	INTRON beat-VI
2R	8101975	2R_8101975_SNP [dm3] 2R_12214470_SNP [dm6]	G	A	1.517e^-4	0.869	DOWNSTREAM CG13171 INTERGENIC
X	8391341	X_8391341_SNP [dm3] X_8497308_SNP [dm6]	T	C	1.518e^-4	0.869	INTRON CG33181
2L	18422706	2L_18422706_SNP [dm3] 2L_18422706_SNP [dm6]	T	A	1.522e^-4	0.869	INTERGENIC
2R	15670814	2R_15670814_DEL [dm3] 2R_19783309_DEL [dm6]	TAGAATGG	T	1.524e^-4	0.869	UPSTREAM CR45231 DOWNSTREAM Obp56g INTERGENIC
2L	9750542	2L_9750542_SNP [dm3] 2L_9750542_SNP [dm6]	C	G	1.524e^-4	0.869	UPSTREAM Cyp4e3 INTERGENIC
3R	9617489	3R_9617489_SNP [dm3] 3R_13791767_SNP [dm6]	A	G	1.525e^-4	0.869	INTERGENIC
3R	9076310	3R_9076310_SNP [dm3] 3R_13250588_SNP [dm6]	C	A	1.525e^-4	0.869	INTRON Ace
2L	7264376	2L_7264376_SNP [dm3] 2L_7264376_SNP [dm6]	G	A	1.535e^-4	0.869	INTRON Wnt4	TF binding site mE1_TFBS_HSA
2L	5920032	2L_5920032_SNP [dm3] 2L_5920032_SNP [dm6]	C	A	1.547e^-4	0.869	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
2L	9968968	2L_9968968_SNP [dm3] 2L_9968968_SNP [dm6]	T	C	1.547e^-4	0.869	DOWNSTREAM RpL13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17325443	2R_17325443_SNP [dm3] 2R_21437938_SNP [dm6]	A	T	1.550e^-4	0.869	INTRON Sdc
3R	9036002	3R_9036002_SNP [dm3] 3R_13210280_SNP [dm6]	A	C	1.551e^-4	0.869	SYNONYMOUS_CODING CG8483
2R	8080366	2R_8080366_SNP [dm3] 2R_12192861_SNP [dm6]	T	A	1.555e^-4	0.869	SYNONYMOUS_CODING CG8858 DOWNSTREAM Cyp6t3	TF binding site mE1_TFBS_cad
3L	12357305	3L_12357305_DEL [dm3] 3L_12364205_DEL [dm6]	GATAACAGTT	G	1.558e^-4	0.869	INTERGENIC
3R	15185979	3R_15185979_SNP [dm3] 3R_19360257_SNP [dm6]	T	A	1.568e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9659908	X_9659908_SNP [dm3] X_9765875_SNP [dm6]	A	T	1.569e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5406744	2L_5406744_SNP [dm3] 2L_5406744_SNP [dm6]	A	T	1.573e^-4	0.869	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3791539	X_3791539_SNP [dm3] X_3897506_SNP [dm6]	G	T	1.575e^-4	0.869	INTRON CG42541
2R	8092786	2R_8092786_SNP [dm3] 2R_12205281_SNP [dm6]	C	T	1.577e^-4	0.869	UPSTREAM CR45276 INTERGENIC
3R	12638198	3R_12638198_SNP [dm3] 3R_16812476_SNP [dm6]	A	C	1.581e^-4	0.869	INTRON abd-A	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3R	22453406	3R_22453406_SNP [dm3] 3R_26627684_SNP [dm6]	T	A	1.584e^-4	0.869	UPSTREAM TwdlO DOWNSTREAM TwdlK INTERGENIC
3R	2847990	3R_2847990_SNP [dm3] 3R_7022268_SNP [dm6]	A	T	1.589e^-4	0.869	INTERGENIC
2R	14817711	2R_14817711_SNP [dm3] 2R_18930206_SNP [dm6]	T	C	1.597e^-4	0.87	INTRON sano
3R	14742935	3R_14742935_SNP [dm3] 3R_18917213_SNP [dm6]	G	T	1.600e^-4	0.87	INTRON Xrp1	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
3L	17285101	3L_17285101_SNP [dm3] 3L_17292001_SNP [dm6]	C	A	1.613e^-4	0.872	INTERGENIC
X	12731456	X_12731456_DEL [dm3] X_12837423_DEL [dm6]	TCAC	T	1.614e^-4	0.872	INTRON Pde9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9468190	2L_9468190_SNP [dm3] 2L_9468190_SNP [dm6]	A	G	1.621e^-4	0.874	INTERGENIC
3R	21075010	3R_21075010_SNP [dm3] 3R_25249288_SNP [dm6]	A	C	1.628e^-4	0.875	UPSTREAM Nup358 DOWNSTREAM Nup37 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11387426	2L_11387426_SNP [dm3] 2L_11387426_SNP [dm6]	T	A	1.657e^-4	0.875	DOWNSTREAM CR43681 INTERGENIC	regulatory region REDfly_CRMs
3R	24302616	3R_24302616_SNP [dm3] 3R_28476894_SNP [dm6]	C	G	1.667e^-4	0.875	INTERGENIC
3R	9175329	3R_9175329_SNP [dm3] 3R_13349607_SNP [dm6]	C	A	1.687e^-4	0.875	INTERGENIC
3R	3018422	3R_3018422_SNP [dm3] 3R_7192700_SNP [dm6]	G	A	1.690e^-4	0.875	INTRON lap
3L	12357452	3L_12357452_SNP [dm3] 3L_12364352_SNP [dm6]	A	C	1.709e^-4	0.875	INTERGENIC
3L	12361362	3L_12361362_SNP [dm3] 3L_12368262_SNP [dm6]	C	T	1.710e^-4	0.875	DOWNSTREAM Ncc69 INTERGENIC
3L	2479544	3L_2479544_SNP [dm3] 3L_2479544_SNP [dm6]	C	T	1.712e^-4	0.875	INTRON CG45186
3R	22453390	3R_22453390_INS [dm3] 3R_26627668_INS [dm6]	A	ACCTCTGAA	1.724e^-4	0.875	UPSTREAM TwdlO DOWNSTREAM TwdlK INTERGENIC
3R	3691876	3R_3691876_SNP [dm3] 3R_7866154_SNP [dm6]	A	T	1.729e^-4	0.875	INTRON CG17816
2R	8093885	2R_8093885_SNP [dm3] 2R_12206380_SNP [dm6]	T	G	1.732e^-4	0.875	EXON CR45276	TF binding site mE1_TFBS_cad
2L	5760719	2L_5760719_SNP [dm3] 2L_5760719_SNP [dm6]	T	A	1.734e^-4	0.875	UTR_3_PRIME CG11030 DOWNSTREAM CG11030
X	22207813	X_22207813_SNP [dm3] X_22805977_SNP [dm6]	G	A	1.741e^-4	0.875	DOWNSTREAM CR45464 INTERGENIC
2R	13132037	2R_13132037_SNP [dm3] 2R_17244532_SNP [dm6]	T	A	1.742e^-4	0.875	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	4011061	2R_4011061_SNP [dm3] 2R_8123556_SNP [dm6]	T	C	1.746e^-4	0.875	SYNONYMOUS_CODING Nup50 UPSTREAM Asap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	8599426	3R_8599426_SNP [dm3] 3R_12773704_SNP [dm6]	G	A	1.758e^-4	0.875	INTRON beat-Vc
2R	16528284	2R_16528284_SNP [dm3] 2R_20640779_SNP [dm6]	T	A	1.766e^-4	0.875	UPSTREAM maf-S & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2L	1485645	2L_1485645_SNP [dm3] 2L_1485645_SNP [dm6]	T	C	1.778e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	6402834	X_6402834_SNP [dm3] X_6508801_SNP [dm6]	C	T	1.785e^-4	0.875	INTRON CG42340
3R	21074813	3R_21074813_SNP [dm3] 3R_25249091_SNP [dm6]	A	T	1.790e^-4	0.875	UTR_3_PRIME Nup37 UPSTREAM Nup358	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	8988076	3R_8988076_SNP [dm3] 3R_13162354_SNP [dm6]	G	C	1.790e^-4	0.875	INTRON timeout
2R	8092784	2R_8092784_INS [dm3] 2R_12205279_INS [dm6]	A	AT	1.791e^-4	0.875	UPSTREAM CR45276 INTERGENIC
2L	7072076	2L_7072076_SNP [dm3] 2L_7072076_SNP [dm6]	C	A	1.791e^-4	0.875	INTRON Pvf2
2L	2516820	2L_2516820_SNP [dm3] 2L_2516820_SNP [dm6]	C	T	1.798e^-4	0.875	DOWNSTREAM CG3528 INTERGENIC
2R	8637786	2R_8637786_SNP [dm3] 2R_12750281_SNP [dm6]	G	T	1.799e^-4	0.875	SPLICE_SITE_REGION CG42663 INTRON CG42663	TF binding site mE1_TFBS_cad
2R	12937587	2R_12937587_SNP [dm3] 2R_17050082_SNP [dm6]	A	C	1.817e^-4	0.875	SYNONYMOUS_CODING CG9646	TF binding site mE1_TFBS_cad
X	16149179	X_16149179_SNP [dm3] X_16255146_SNP [dm6]	C	G	1.820e^-4	0.875	DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2L	18248824	2L_18248824_SNP [dm3] 2L_18248824_SNP [dm6]	C	T	1.826e^-4	0.875	INTRON CG42750
2L	8652983	2L_8652983_SNP [dm3] 2L_8652983_SNP [dm6]	G	A	1.827e^-4	0.875	INTRON Sema-1a
3R	17028560	3R_17028560_SNP [dm3] 3R_21202838_SNP [dm6]	T	C	1.828e^-4	0.875	INTRON SNF4Agamma
2R	14884307	2R_14884307_SNP [dm3] 2R_18996802_SNP [dm6]	G	A	1.829e^-4	0.875	INTRON tn
2L	9318785	2L_9318785_SNP [dm3] 2L_9318785_SNP [dm6]	A	C	1.833e^-4	0.875	INTERGENIC
3R	26572910	3R_26572910_SNP [dm3] 3R_30747188_SNP [dm6]	A	G	1.834e^-4	0.875	UPSTREAM Npc2h & 1 other INTERGENIC
2L	9313920	2L_9313920_SNP [dm3] 2L_9313920_SNP [dm6]	A	C	1.837e^-4	0.875	INTERGENIC
3R	11248663	3R_11248663_SNP [dm3] 3R_15422941_SNP [dm6]	T	A	1.842e^-4	0.875	SYNONYMOUS_CODING CG6118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13402161	2R_13402161_SNP [dm3] 2R_17514656_SNP [dm6]	C	A	1.847e^-4	0.875	UTR_5_PRIME CG4853 DOWNSTREAM CG4847	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15215833	X_15215833_SNP [dm3] X_15321800_SNP [dm6]	A	C	1.849e^-4	0.875	INTRON Top1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14154213	X_14154213_SNP [dm3] X_14260180_SNP [dm6]	A	T	1.855e^-4	0.875	INTERGENIC
3R	9028810	3R_9028810_SNP [dm3] 3R_13203088_SNP [dm6]	A	G	1.857e^-4	0.875	INTERGENIC
3L	7699056	3L_7699056_SNP [dm3] 3L_7705956_SNP [dm6]	A	G	1.861e^-4	0.875	INTRON CG32373 & 1 other
2R	10980711	2R_10980711_SNP [dm3] 2R_15093206_SNP [dm6]	T	G	1.862e^-4	0.875	DOWNSTREAM CR44457 INTERGENIC
3R	9077048	3R_9077048_SNP [dm3] 3R_13251326_SNP [dm6]	T	A	1.864e^-4	0.875	INTRON Ace
2L	9045486	2L_9045486_SNP [dm3] 2L_9045486_SNP [dm6]	G	A	1.866e^-4	0.875	INTERGENIC
2L	9750547	2L_9750547_SNP [dm3] 2L_9750547_SNP [dm6]	A	C	1.868e^-4	0.875	UPSTREAM Cyp4e3 INTERGENIC
2L	8960336	2L_8960336_SNP [dm3] 2L_8960336_SNP [dm6]	A	T	1.873e^-4	0.875	SYNONYMOUS_CODING CG9525
3R	14069240	3R_14069240_SNP [dm3] 3R_18243518_SNP [dm6]	C	T	1.873e^-4	0.875	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_Trl
2L	1514500	2L_1514500_SNP [dm3] 2L_1514500_SNP [dm6]	C	G	1.876e^-4	0.875	INTERGENIC
3L	1111458	3L_1111458_SNP [dm3] 3L_1111458_SNP [dm6]	A	T	1.876e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24304166	3R_24304166_SNP [dm3] 3R_28478444_SNP [dm6]	T	C	1.877e^-4	0.875	INTERGENIC
2R	14493813	2R_14493813_SNP [dm3] 2R_18606308_SNP [dm6]	G	T	1.878e^-4	0.875	INTRON GEFmeso	TF binding site mE1_TFBS_sbb
X	15484647	X_15484647_SNP [dm3] X_15590614_SNP [dm6]	T	C	1.879e^-4	0.875	SYNONYMOUS_CODING CG9220
2R	8105220	2R_8105220_SNP [dm3] 2R_12217715_SNP [dm6]	G	A	1.885e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1312522	2L_1312522_SNP [dm3] 2L_1312522_SNP [dm6]	C	G	1.894e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	22983147	3R_22983147_SNP [dm3] 3R_27157425_SNP [dm6]	A	G	1.897e^-4	0.875	UTR_3_PRIME Men-b UPSTREAM grass DOWNSTREAM Men-b	TF binding site mE1_TFBS_Trl
3L	20345764	3L_20345764_SNP [dm3] 3L_20352664_SNP [dm6]	G	A	1.899e^-4	0.875	UPSTREAM CG5618 DOWNSTREAM eRF1 INTRON eRF1
2R	13940021	2R_13940021_SNP [dm3] 2R_18052516_SNP [dm6]	T	G	1.903e^-4	0.875	UPSTREAM Muc55B DOWNSTREAM CG10911 INTERGENIC
2R	11142331	2R_11142331_SNP [dm3] 2R_15254826_SNP [dm6]	T	G	1.912e^-4	0.875	SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8328279	2R_8328279_SNP [dm3] 2R_12440774_SNP [dm6]	C	T	1.922e^-4	0.875	NON_SYNONYMOUS_CODING CG30334 INTRON Dyb	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10147779	2L_10147779_SNP [dm3] 2L_10147779_SNP [dm6]	G	A	1.927e^-4	0.875	INTRON CG44153 & 1 other	TF binding site mE1_TFBS_cad
2R	8101974	2R_8101974_SNP [dm3] 2R_12214469_SNP [dm6]	T	A	1.929e^-4	0.875	DOWNSTREAM CG13171 INTERGENIC
X	2222214	X_2222214_SNP [dm3] X_2328181_SNP [dm6]	T	A	1.936e^-4	0.875	SYNONYMOUS_CODING CG2854 INTRON phl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9606719	3R_9606719_SNP [dm3] 3R_13780997_SNP [dm6]	C	A	1.941e^-4	0.875	UTR_5_PRIME CG9286 DOWNSTREAM CG9288 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17932866	2R_17932866_SNP [dm3] 2R_22045361_SNP [dm6]	G	A	1.943e^-4	0.875	INTERGENIC
3L	4146104	3L_4146104_SNP [dm3] 3L_4146104_SNP [dm6]	G	T	1.943e^-4	0.875	DOWNSTREAM CG32260 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	12293484	X_12293484_SNP [dm3] X_12399451_SNP [dm6]	G	A	1.944e^-4	0.875	INTERGENIC
2R	1727054	2R_1727054_SNP [dm3] 2R_5839549_SNP [dm6]	G	A	1.958e^-4	0.875	INTRON dpr12
3R	9216127	3R_9216127_SNP [dm3] 3R_13390405_SNP [dm6]	C	A	1.959e^-4	0.875	INTRON CCHa2
3R	9031539	3R_9031539_SNP [dm3] 3R_13205817_SNP [dm6]	C	T	1.959e^-4	0.875	INTERGENIC
X	15014751	X_15014751_SNP [dm3] X_15120718_SNP [dm6]	G	A	1.960e^-4	0.875	INTERGENIC
3R	18784568	3R_18784568_SNP [dm3] 3R_22958846_SNP [dm6]	T	A	1.966e^-4	0.875	INTRON klg	TF binding site mE1_TFBS_cad
3R	24461888	3R_24461888_DEL [dm3] 3R_28636166_DEL [dm6]	TT	T	1.971e^-4	0.875	UPSTREAM CG9988 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	24283038	3R_24283038_SNP [dm3] 3R_28457316_SNP [dm6]	G	A	1.972e^-4	0.875	INTRON beat-VI
2R	15908961	2R_15908961_SNP [dm3] 2R_20021456_SNP [dm6]	C	T	1.978e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9058432	3R_9058432_SNP [dm3] 3R_13232710_SNP [dm6]	A	G	1.981e^-4	0.875	SYNONYMOUS_CODING Ace
2L	9965451	2L_9965451_SNP [dm3] 2L_9965451_SNP [dm6]	G	A	1.981e^-4	0.875	SYNONYMOUS_CODING Dref
3R	15282917	3R_15282917_SNP [dm3] 3R_19457195_SNP [dm6]	C	A	1.994e^-4	0.875	SYNONYMOUS_CODING CG31221
3R	9607125	3R_9607125_SNP [dm3] 3R_13781403_SNP [dm6]	C	T	1.995e^-4	0.875	UPSTREAM Dip-B DOWNSTREAM CG9288 & 1 other INTRON CG9286	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14524516	2R_14524516_SNP [dm3] 2R_18637011_SNP [dm6]	C	T	1.999e^-4	0.875	NON_SYNONYMOUS_CODING CG30122	TF binding site mE1_TFBS_inv
2R	7405433	2R_7405433_SNP [dm3] 2R_11517928_SNP [dm6]	G	A	2.000e^-4	0.875	INTERGENIC
3R	24531591	3R_24531591_SNP [dm3] 3R_28705869_SNP [dm6]	T	C	2.006e^-4	0.875	INTRON htt
3L	867124	3L_867124_SNP [dm3] 3L_867124_SNP [dm6]	T	C	2.011e^-4	0.875	INTRON CG12502	TF binding site BDTNP1_TFBS_dl
X	3468679	X_3468679_SNP [dm3] X_3574646_SNP [dm6]	T	C	2.011e^-4	0.875	UTR_5_PRIME AstA-R1	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	21822869	3R_21822869_SNP [dm3] 3R_25997147_SNP [dm6]	A	G	2.019e^-4	0.875	UPSTREAM E_spl_mdelta-HLH & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	24234978	3R_24234978_SNP [dm3] 3R_28409256_SNP [dm6]	G	C	2.026e^-4	0.875	INTERGENIC
2R	9738512	2R_9738512_SNP [dm3] 2R_13851007_SNP [dm6]	G	A	2.033e^-4	0.875	NON_SYNONYMOUS_CODING CG30485
3L	8829288	3L_8829288_SNP [dm3] 3L_8836188_SNP [dm6]	G	A	2.036e^-4	0.875	UPSTREAM CG32026 INTRON dally	TF binding site mE1_TFBS_Kr
3R	9077051	3R_9077051_SNP [dm3] 3R_13251329_SNP [dm6]	G	A	2.038e^-4	0.875	INTRON Ace
2R	15734135	2R_15734135_SNP [dm3] 2R_19846630_SNP [dm6]	G	A	2.038e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13142501	X_13142501_SNP [dm3] X_13248468_SNP [dm6]	C	T	2.046e^-4	0.875	INTRON mew
3R	6131997	3R_6131997_SNP [dm3] 3R_10306275_SNP [dm6]	G	A	2.051e^-4	0.875	SYNONYMOUS_CODING CG43143
3R	9067436	3R_9067436_DEL [dm3] 3R_13241714_DEL [dm6]	GCAGAACTTTAACTCAACTT...	G	2.052e^-4	0.875	INTRON Ace
X	16159947	X_16159947_SNP [dm3] X_16265914_SNP [dm6]	C	T	2.052e^-4	0.875	INTRON CG12507
3R	5977922	3R_5977922_SNP [dm3] 3R_10152200_SNP [dm6]	G	T	2.062e^-4	0.877	UPSTREAM CG34303 INTRON Invadolysin	transposable element FlyBase
3R	9756389	3R_9756389_SNP [dm3] 3R_13930667_SNP [dm6]	G	A	2.076e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	13198050	3L_13198050_SNP [dm3] 3L_13204950_SNP [dm6]	C	T	2.093e^-4	0.884	INTERGENIC
3R	9147234	3R_9147234_SNP [dm3] 3R_13321512_SNP [dm6]	A	G	2.095e^-4	0.884	INTERGENIC
3L	20436021	3L_20436021_SNP [dm3] 3L_20442921_SNP [dm6]	C	T	2.102e^-4	0.884	INTRON CG5910	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8734287	2R_8734287_SNP [dm3] 2R_12846782_SNP [dm6]	T	C	2.108e^-4	0.884	UPSTREAM CG17575 DOWNSTREAM antr INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14299334	3R_14299334_SNP [dm3] 3R_18473612_SNP [dm6]	A	G	2.113e^-4	0.884	INTRON fru	TF binding site BDTNP1_TFBS_dl
2R	8092783	2R_8092783_SNP [dm3] 2R_12205278_SNP [dm6]	G	T	2.116e^-4	0.884	UPSTREAM CR45276 INTERGENIC
2R	9232263	2R_9232263_SNP [dm3] 2R_13344758_SNP [dm6]	T	C	2.124e^-4	0.884	INTRON CR44206
2L	15326847	2L_15326847_SNP [dm3] 2L_15326847_SNP [dm6]	G	T	2.125e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9468191	2L_9468191_SNP [dm3] 2L_9468191_SNP [dm6]	A	C	2.127e^-4	0.884	INTERGENIC
3R	8599431	3R_8599431_SNP [dm3] 3R_12773709_SNP [dm6]	T	A	2.130e^-4	0.884	INTRON beat-Vc
3R	22453485	3R_22453485_SNP [dm3] 3R_26627763_SNP [dm6]	T	A	2.150e^-4	0.889	DOWNSTREAM TwdlK INTERGENIC
X	17073476	X_17073476_SNP [dm3] X_17179443_SNP [dm6]	A	T	2.153e^-4	0.889	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	17185719	3L_17185719_DEL [dm3] 3L_17192619_DEL [dm6]	TA	T	2.168e^-4	0.894	INTRON Rbp6
X	13736804	X_13736804_SNP [dm3] X_13842771_SNP [dm6]	A	G	2.195e^-4	0.894	INTRON AMPdeam
3R	24379359	3R_24379359_SNP [dm3] 3R_28553637_SNP [dm6]	G	C	2.210e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	24177637	3R_24177637_SNP [dm3] 3R_28351915_SNP [dm6]	G	C	2.211e^-4	0.894	UPSTREAM Or98b INTERGENIC
3R	11722589	3R_11722589_SNP [dm3] 3R_15896867_SNP [dm6]	A	G	2.222e^-4	0.894	UPSTREAM CG14877 DOWNSTREAM glob1 INTERGENIC
3R	8993017	3R_8993017_SNP [dm3] 3R_13167295_SNP [dm6]	T	C	2.233e^-4	0.894	INTERGENIC
2L	11773832	2L_11773832_SNP [dm3] 2L_11773832_SNP [dm6]	G	A	2.237e^-4	0.894	INTERGENIC
2R	8101995	2R_8101995_SNP [dm3] 2R_12214490_SNP [dm6]	C	T	2.245e^-4	0.894	DOWNSTREAM CG13171 INTERGENIC
2L	15540907	2L_15540907_SNP [dm3] 2L_15540907_SNP [dm6]	T	A	2.254e^-4	0.894	INTERGENIC
2R	15163794	2R_15163794_SNP [dm3] 2R_19276289_SNP [dm6]	T	C	2.263e^-4	0.894	INTRON rib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13310968	2L_13310968_SNP [dm3] 2L_13310968_SNP [dm6]	A	G	2.268e^-4	0.894	INTRON CG43778	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6335891	2L_6335891_SNP [dm3] 2L_6335891_SNP [dm6]	T	C	2.268e^-4	0.894	NON_SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24560402	3R_24560402_SNP [dm3] 3R_28734680_SNP [dm6]	G	A	2.269e^-4	0.894	UTR_3_PRIME htt DOWNSTREAM htt
2R	20864168	2R_20864168_SNP [dm3] 2R_24976645_SNP [dm6]	T	C	2.301e^-4	0.894	UTR_3_PRIME emp DOWNSTREAM CR45252
3L	12419678	3L_12419678_SNP [dm3] 3L_12426578_SNP [dm6]	C	A	2.304e^-4	0.894	INTRON toe
3L	12419777	3L_12419777_SNP [dm3] 3L_12426677_SNP [dm6]	T	A	2.304e^-4	0.894	INTRON toe
2R	8095598	2R_8095598_SNP [dm3] 2R_12208093_SNP [dm6]	T	G	2.308e^-4	0.894	DOWNSTREAM CR45276 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	5406774	2L_5406774_SNP [dm3] 2L_5406774_SNP [dm6]	A	G	2.312e^-4	0.894	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9076317	3R_9076317_DEL [dm3] 3R_13250595_DEL [dm6]	AG	A	2.330e^-4	0.894	INTRON Ace
3L	10897680	3L_10897680_SNP [dm3] 3L_10904580_SNP [dm6]	C	G	2.338e^-4	0.894	INTERGENIC
X	14693281	X_14693281_SNP [dm3] X_14799248_SNP [dm6]	A	C	2.352e^-4	0.894	INTRON rut	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22162618	3R_22162618_SNP [dm3] 3R_26336896_SNP [dm6]	G	A	2.354e^-4	0.894	INTRON CG33970
3R	24251337	3R_24251337_SNP [dm3] 3R_28425615_SNP [dm6]	C	G	2.355e^-4	0.894	INTRON beat-VI
2R	4011286	2R_4011286_SNP [dm3] 2R_8123781_SNP [dm6]	T	C	2.356e^-4	0.894	SYNONYMOUS_CODING Nup50 UPSTREAM Asap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	14086525	2R_14086525_SNP [dm3] 2R_18199020_SNP [dm6]	A	T	2.360e^-4	0.894	INTERGENIC
2R	20279716	2R_20279716_INS [dm3] 2R_24392193_INS [dm6]	T	TGTAT	2.362e^-4	0.894	UTR_3_PRIME slik DOWNSTREAM slik & 1 other
X	16274206	X_16274206_SNP [dm3] X_16380173_SNP [dm6]	A	G	2.376e^-4	0.894	INTRON Fur2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7686390	X_7686390_SNP [dm3] X_7792357_SNP [dm6]	A	C	2.379e^-4	0.894	INTERGENIC
X	18989392	X_18989392_SNP [dm3] X_19095359_SNP [dm6]	A	G	2.382e^-4	0.894	INTERGENIC
2R	14350447	2R_14350447_SNP [dm3] 2R_18462942_SNP [dm6]	A	T	2.392e^-4	0.894	INTRON CG30116
2R	4360189	2R_4360189_SNP [dm3] 2R_8472684_SNP [dm6]	G	A	2.393e^-4	0.894	SYNONYMOUS_CODING Mal-A8
X	1677264	X_1677264_SNP [dm3] X_1783231_SNP [dm6]	A	C	2.400e^-4	0.894	SYNONYMOUS_CODING Adar UTR_3_PRIME Adar INTRON CG42666	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2867276	3R_2867276_DEL [dm3] 3R_7041554_DEL [dm6]	CTA	C	2.402e^-4	0.894	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	10841294	2R_10841294_SNP [dm3] 2R_14953789_SNP [dm6]	G	C	2.408e^-4	0.894	INTRON aPKC	TF binding site mE1_TFBS_Trl
3R	15186102	3R_15186102_SNP [dm3] 3R_19360380_SNP [dm6]	A	C	2.408e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8990896	3R_8990896_SNP [dm3] 3R_13165174_SNP [dm6]	G	A	2.412e^-4	0.894	INTERGENIC
X	6814766	X_6814766_SNP [dm3] X_6920733_SNP [dm6]	T	C	2.421e^-4	0.894	INTRON CG14431
X	9283746	X_9283746_SNP [dm3] X_9389713_SNP [dm6]	G	A	2.431e^-4	0.894	INTRON mgl
2L	10076370	2L_10076370_SNP [dm3] 2L_10076370_SNP [dm6]	G	A	2.431e^-4	0.894	INTRON CG44153
3R	12099060	3R_12099060_SNP [dm3] 3R_16273338_SNP [dm6]	G	C	2.431e^-4	0.894	UPSTREAM Mat89Ba INTRON gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	5854445	X_5854445_SNP [dm3] X_5960412_SNP [dm6]	C	A	2.445e^-4	0.894	NON_SYNONYMOUS_CODING fs_1_M3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9715478	2L_9715478_SNP [dm3] 2L_9715478_SNP [dm6]	A	T	2.459e^-4	0.894	UTR_3_PRIME Nckx30C DOWNSTREAM Nckx30C	TF binding site BDTNP1_TFBS_dl
2L	3762111	2L_3762111_SNP [dm3] 2L_3762111_SNP [dm6]	A	G	2.459e^-4	0.894	SYNONYMOUS_CODING CG43707	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	4547213	X_4547213_SNP [dm3] X_4653180_SNP [dm6]	C	A	2.462e^-4	0.894	NON_SYNONYMOUS_CODING CG15473 INTRON Cbp80	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	24490199	3R_24490199_SNP [dm3] 3R_28664477_SNP [dm6]	G	T	2.464e^-4	0.894	INTERGENIC
3L	4586293	3L_4586293_SNP [dm3] 3L_4586293_SNP [dm6]	T	C	2.467e^-4	0.894	INTRON CG42540
2L	9449528	2L_9449528_SNP [dm3] 2L_9449528_SNP [dm6]	A	G	2.469e^-4	0.894	UPSTREAM numb INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	2223562	X_2223562_SNP [dm3] X_2329529_SNP [dm6]	G	T	2.475e^-4	0.894	UPSTREAM CR33218 DOWNSTREAM CG2854 INTRON phl
3R	11039880	3R_11039880_SNP [dm3] 3R_15214158_SNP [dm6]	A	T	2.478e^-4	0.894	UPSTREAM CG6654 DOWNSTREAM SIDL INTRON CG4210	TF binding site BDTNP1_TFBS_Med
2R	10861135	2R_10861135_SNP [dm3] 2R_14973630_SNP [dm6]	A	G	2.495e^-4	0.894	INTRON ckn
2L	3548324	2L_3548324_SNP [dm3] 2L_3548324_SNP [dm6]	C	T	2.495e^-4	0.894	UTR_3_PRIME drm DOWNSTREAM drm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15186051	3R_15186051_DEL [dm3] 3R_19360329_DEL [dm6]	GA	C	2.499e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9661973	3R_9661973_SNP [dm3] 3R_13836251_SNP [dm6]	T	C	2.503e^-4	0.894	SYNONYMOUS_CODING Nsf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14135150	3R_14135150_SNP [dm3] 3R_18309428_SNP [dm6]	C	T	2.510e^-4	0.894	UTR_5_PRIME PKD
2R	19681367	2R_19681367_SNP [dm3] 2R_23793844_SNP [dm6]	G	T	2.512e^-4	0.894	INTRON CG9850
2L	4681321	2L_4681321_SNP [dm3] 2L_4681321_SNP [dm6]	G	T	2.540e^-4	0.894	INTERGENIC
3L	4159832	3L_4159832_SNP [dm3] 3L_4159832_SNP [dm6]	T	G	2.545e^-4	0.894	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	26042073	3R_26042073_SNP [dm3] 3R_30216351_SNP [dm6]	C	T	2.554e^-4	0.894	UPSTREAM CecC INTERGENIC
X	3801987	X_3801987_SNP [dm3] X_3907954_SNP [dm6]	C	T	2.554e^-4	0.894	INTRON CG42541
3R	7351501	3R_7351501_SNP [dm3] 3R_11525779_SNP [dm6]	C	G	2.558e^-4	0.894	INTERGENIC
2L	13310987	2L_13310987_DEL [dm3] 2L_13310987_DEL [dm6]	ACTAGTCCC	A	2.561e^-4	0.894	INTRON CG43778	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5224005	3L_5224005_SNP [dm3] 3L_5230905_SNP [dm6]	G	A	2.566e^-4	0.894	INTRON shep
2R	8093892	2R_8093892_SNP [dm3] 2R_12206387_SNP [dm6]	G	A	2.577e^-4	0.894	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	18987826	3R_18987826_SNP [dm3] 3R_23162104_SNP [dm6]	A	C	2.593e^-4	0.894	UPSTREAM CG13829 INTERGENIC
X	15552926	X_15552926_SNP [dm3] X_15658893_SNP [dm6]	C	T	2.594e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
2L	1516943	2L_1516943_SNP [dm3] 2L_1516943_SNP [dm6]	T	C	2.606e^-4	0.894	NON_SYNONYMOUS_CODING CG18132 DOWNSTREAM halo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	12359832	2R_12359832_SNP [dm3] 2R_16472327_SNP [dm6]	A	G	2.608e^-4	0.894	INTERGENIC
2L	15496445	2L_15496445_SNP [dm3] 2L_15496445_SNP [dm6]	C	A	2.610e^-4	0.894	INTERGENIC
3R	17035437	3R_17035437_SNP [dm3] 3R_21209715_SNP [dm6]	G	A	2.612e^-4	0.894	INTRON SNF4Agamma
2R	18969926	2R_18969926_SNP [dm3] 2R_23082403_SNP [dm6]	A	G	2.618e^-4	0.894	SYNONYMOUS_CODING Gr59b DOWNSTREAM Gr59a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9617599	3R_9617599_SNP [dm3] 3R_13791877_SNP [dm6]	C	T	2.619e^-4	0.894	INTERGENIC	TF binding site mE1_TFBS_HSA
X	19552261	X_19552261_SNP [dm3] X_19658228_SNP [dm6]	T	G	2.630e^-4	0.894	SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9175084	3R_9175084_INS [dm3] 3R_13349362_INS [dm6]	T	TG	2.644e^-4	0.894	INTERGENIC
3R	24418198	3R_24418198_SNP [dm3] 3R_28592476_SNP [dm6]	A	G	2.645e^-4	0.894	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc
2R	15703585	2R_15703585_SNP [dm3] 2R_19816080_SNP [dm6]	G	T	2.655e^-4	0.894	UTR_3_PRIME Obp56h
3R	8993039	3R_8993039_SNP [dm3] 3R_13167317_SNP [dm6]	C	T	2.663e^-4	0.894	INTERGENIC
X	14154373	X_14154373_SNP [dm3] X_14260340_SNP [dm6]	A	T	2.665e^-4	0.894	UPSTREAM CG1461 INTERGENIC
X	16159938	X_16159938_SNP [dm3] X_16265905_SNP [dm6]	T	C	2.677e^-4	0.894	INTRON CG12507
3R	11115752	3R_11115752_SNP [dm3] 3R_15290030_SNP [dm6]	C	T	2.679e^-4	0.894	UPSTREAM Tm1 DOWNSTREAM CG45218 INTRON Tm1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9710947	3R_9710947_SNP [dm3] 3R_13885225_SNP [dm6]	C	T	2.681e^-4	0.894	INTERGENIC
X	17074133	X_17074133_SNP [dm3] X_17180100_SNP [dm6]	C	T	2.682e^-4	0.894	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1111389	3L_1111389_SNP [dm3] 3L_1111389_SNP [dm6]	T	A	2.685e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15540892	2L_15540892_DEL [dm3] 2L_15540892_DEL [dm6]	TAGTTATTAG	T	2.687e^-4	0.894	INTERGENIC
2R	17930822	2R_17930822_SNP [dm3] 2R_22043317_SNP [dm6]	C	T	2.689e^-4	0.894	UPSTREAM PpD5 INTERGENIC
3R	19861896	3R_19861896_SNP [dm3] 3R_24036174_SNP [dm6]	G	A	2.701e^-4	0.894	SYNONYMOUS_CODING Miro	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9607120	3R_9607120_SNP [dm3] 3R_13781398_SNP [dm6]	A	T	2.702e^-4	0.894	UPSTREAM Dip-B DOWNSTREAM CG9288 & 1 other INTRON CG9286	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	5953077	2R_5953077_SNP [dm3] 2R_10065572_SNP [dm6]	G	A	2.702e^-4	0.894	NON_SYNONYMOUS_CODING CG2292	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11291432	3L_11291432_SNP [dm3] 3L_11298332_SNP [dm6]	G	C	2.706e^-4	0.894	INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	1720046	2R_1720046_SNP [dm3] 2R_5832541_SNP [dm6]	T	G	2.708e^-4	0.894	INTRON dpr12
3R	4715587	3R_4715587_SNP [dm3] 3R_8889865_SNP [dm6]	C	T	2.709e^-4	0.894	INTRON pyd
3R	8599407	3R_8599407_SNP [dm3] 3R_12773685_SNP [dm6]	C	T	2.709e^-4	0.894	INTRON beat-Vc
3L	10771831	3L_10771831_SNP [dm3] 3L_10778731_SNP [dm6]	A	T	2.711e^-4	0.894	INTERGENIC
X	7783469	X_7783469_SNP [dm3] X_7889436_SNP [dm6]	A	T	2.717e^-4	0.894	SYNONYMOUS_CODING Nek2 UPSTREAM CG10932	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	4224496	2L_4224496_SNP [dm3] 2L_4224496_SNP [dm6]	A	G	2.721e^-4	0.894	DOWNSTREAM CG3702 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4031959	3L_4031959_SNP [dm3] 3L_4031959_SNP [dm6]	C	G	2.731e^-4	0.894	UTR_3_PRIME Gr64b & 1 other UPSTREAM Gr64d & 1 other
2R	13785122	2R_13785122_INS [dm3] 2R_17897617_INS [dm6]	T	TGT	2.733e^-4	0.894	INTRON Elk	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11265255	3R_11265255_SNP [dm3] 3R_15439533_SNP [dm6]	A	T	2.739e^-4	0.894	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
3R	8979770	3R_8979770_SNP [dm3] 3R_13154048_SNP [dm6]	A	G	2.743e^-4	0.894	INTRON timeout & 2 others
2L	6380387	2L_6380387_SNP [dm3] 2L_6380387_SNP [dm6]	G	A	2.749e^-4	0.894	UPSTREAM CG9507 INTRON CG42368
3R	9710470	3R_9710470_SNP [dm3] 3R_13884748_SNP [dm6]	A	T	2.751e^-4	0.894	INTERGENIC
2L	7185816	2L_7185816_SNP [dm3] 2L_7185816_SNP [dm6]	C	T	2.754e^-4	0.894	UTR_3_PRIME CG4496 DOWNSTREAM CG4495
2R	7958961	2R_7958961_SNP [dm3] 2R_12071456_SNP [dm6]	A	C	2.756e^-4	0.894	INTRON CG8888
3R	14884999	3R_14884999_SNP [dm3] 3R_19059277_SNP [dm6]	T	A	2.759e^-4	0.894	INTRON cdi	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8979771	3R_8979771_SNP [dm3] 3R_13154049_SNP [dm6]	G	T	2.763e^-4	0.894	INTRON timeout & 2 others
2R	1607073	2R_1607073_SNP [dm3] 2R_5719568_SNP [dm6]	G	C	2.766e^-4	0.894	INTRON ap
2L	5406783	2L_5406783_SNP [dm3] 2L_5406783_SNP [dm6]	A	C	2.769e^-4	0.894	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13874092	3R_13874092_SNP [dm3] 3R_18048370_SNP [dm6]	T	C	2.781e^-4	0.894	UTR_5_PRIME htl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	18938658	2L_18938658_SNP [dm3] 2L_18938658_SNP [dm6]	G	A	2.782e^-4	0.894	SYNONYMOUS_CODING ssp3	TF binding site mE1_TFBS_sens
2R	17309194	2R_17309194_SNP [dm3] 2R_21421689_SNP [dm6]	A	T	2.797e^-4	0.894	INTRON Sdc
2R	1539493	2R_1539493_SNP [dm3] 2R_5651988_SNP [dm6]	A	G	2.797e^-4	0.894	INTRON CG11665	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	17132947	2R_17132947_SNP [dm3] 2R_21245442_SNP [dm6]	T	A	2.807e^-4	0.894	INTRON ASPP	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	13665220	2L_13665220_SNP [dm3] 2L_13665220_SNP [dm6]	G	A	2.810e^-4	0.894	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1310161	2L_1310161_SNP [dm3] 2L_1310161_SNP [dm6]	C	T	2.815e^-4	0.894	INTERGENIC
3R	8002328	3R_8002328_SNP [dm3] 3R_12176606_SNP [dm6]	G	T	2.815e^-4	0.894	INTERGENIC
2R	15734119	2R_15734119_SNP [dm3] 2R_19846614_SNP [dm6]	C	T	2.820e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15734139	2R_15734139_INS [dm3] 2R_19846634_INS [dm6]	A	ACA	2.820e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2225526	X_2225526_SNP [dm3] X_2331493_SNP [dm6]	C	A	2.826e^-4	0.894	UTR_3_PRIME Ilp6 DOWNSTREAM CR33218 INTRON phl
X	9585106	X_9585106_SNP [dm3] X_9691073_SNP [dm6]	A	C	2.830e^-4	0.894	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18119487	3L_18119487_SNP [dm3] 3L_18126387_SNP [dm6]	T	C	2.836e^-4	0.894	INTERGENIC
X	7885209	X_7885209_SNP [dm3] X_7991176_SNP [dm6]	G	C	2.840e^-4	0.894	INTERGENIC
2R	12767343	2R_12767343_SNP [dm3] 2R_16879838_SNP [dm6]	C	T	2.841e^-4	0.894	UPSTREAM CG6472 INTRON CG8910
2L	15371090	2L_15371090_INS [dm3] 2L_15371090_INS [dm6]	A	AA	2.880e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24234899	3R_24234899_SNP [dm3] 3R_28409177_SNP [dm6]	T	A	2.894e^-4	0.894	INTERGENIC
2L	3748280	2L_3748280_SNP [dm3] 2L_3748280_SNP [dm6]	A	C	2.895e^-4	0.894	INTRON CG10019
3R	9186941	3R_9186941_SNP [dm3] 3R_13361219_SNP [dm6]	A	C	2.897e^-4	0.894	DOWNSTREAM poly INTERGENIC
2L	13665284	2L_13665284_SNP [dm3] 2L_13665284_SNP [dm6]	C	T	2.899e^-4	0.894	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	6172811	X_6172811_SNP [dm3] X_6278778_SNP [dm6]	A	G	2.918e^-4	0.894	UPSTREAM CR45530 INTRON Ubi-p5E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
2R	9683472	2R_9683472_SNP [dm3] 2R_13795967_SNP [dm6]	C	A	2.925e^-4	0.894	INTRON Cpr50Cb
X	6336510	X_6336510_SNP [dm3] X_6442477_SNP [dm6]	C	G	2.925e^-4	0.894	INTRON CG42340
3R	21091907	3R_21091907_SNP [dm3] 3R_25266185_SNP [dm6]	T	C	2.928e^-4	0.894	SYNONYMOUS_CODING RIOK2 UPSTREAM Aats-gln DOWNSTREAM CR45214	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4688730	3R_4688730_SNP [dm3] 3R_8863008_SNP [dm6]	A	G	2.939e^-4	0.894	DOWNSTREAM tRNA:R:85Cb INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	10356035	X_10356035_SNP [dm3] X_10462002_SNP [dm6]	T	C	2.952e^-4	0.894	UTR_3_PRIME nocte DOWNSTREAM Neb-cGP	TF binding site BDTNP1_TFBS_dl
3R	24562708	3R_24562708_SNP [dm3] 3R_28736986_SNP [dm6]	T	A	2.958e^-4	0.894	DOWNSTREAM AstA-R2 INTERGENIC
2L	9058129	2L_9058129_SNP [dm3] 2L_9058129_SNP [dm6]	T	C	2.962e^-4	0.894	INTRON CG31708
3R	17195974	3R_17195974_SNP [dm3] 3R_21370252_SNP [dm6]	T	G	2.962e^-4	0.894	UTR_3_PRIME mod_mdg4_ DOWNSTREAM pre-mod_mdg4_-X & 3 others INTRON mod_mdg4_
3R	6489193	3R_6489193_SNP [dm3] 3R_10663471_SNP [dm6]	A	G	2.973e^-4	0.894	INTERGENIC	TF binding site mE1_TFBS_sens
3R	9172181	3R_9172181_SNP [dm3] 3R_13346459_SNP [dm6]	T	C	2.974e^-4	0.894	INTERGENIC
X	19552263	X_19552263_SNP [dm3] X_19658230_SNP [dm6]	G	A	2.978e^-4	0.894	NON_SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20400641	3L_20400641_SNP [dm3] 3L_20407541_SNP [dm6]	A	C	2.979e^-4	0.894	UTR_3_PRIME CG13248	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	13132576	2R_13132576_SNP [dm3] 2R_17245071_SNP [dm6]	T	A	2.979e^-4	0.894	DOWNSTREAM CG18469 INTRON mbl
2L	1312472	2L_1312472_SNP [dm3] 2L_1312472_SNP [dm6]	G	A	2.989e^-4	0.894	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	17185142	3L_17185142_SNP [dm3] 3L_17192042_SNP [dm6]	G	A	2.990e^-4	0.894	INTRON Rbp6
3R	24234981	3R_24234981_SNP [dm3] 3R_28409259_SNP [dm6]	T	C	2.998e^-4	0.894	INTERGENIC
3L	6837564	3L_6837564_SNP [dm3] 3L_6844464_SNP [dm6]	T	C	2.998e^-4	0.894	INTERGENIC
3R	14114071	3R_14114071_SNP [dm3] 3R_18288349_SNP [dm6]	T	G	3.008e^-4	0.894	SYNONYMOUS_CODING CG7131 DOWNSTREAM l_3_05822	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	14982860	3R_14982860_DEL [dm3] 3R_19157138_DEL [dm6]	TA	T	3.019e^-4	0.894	UPSTREAM nos & 1 other INTRON CG11779	regulatory region REDfly_CRMs TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	11448044	2R_11448044_SNP [dm3] 2R_15560539_SNP [dm6]	G	A	3.027e^-4	0.894	UPSTREAM CG12963 INTRON CG12963	TF binding site mE1_TFBS_inv
3R	16908918	3R_16908918_SNP [dm3] 3R_21083196_SNP [dm6]	G	T	3.028e^-4	0.894	UTR_3_PRIME RhoGAP93B
2L	9449562	2L_9449562_INS [dm3] 2L_9449562_INS [dm6]	A	ATTATAT	3.030e^-4	0.894	UPSTREAM numb INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3R	24315082	3R_24315082_SNP [dm3] 3R_28489360_SNP [dm6]	T	G	3.035e^-4	0.894	INTRON Dhc98D
2R	17324765	2R_17324765_SNP [dm3] 2R_21437260_SNP [dm6]	A	G	3.037e^-4	0.894	INTRON Sdc
2L	9468412	2L_9468412_SNP [dm3] 2L_9468412_SNP [dm6]	G	T	3.039e^-4	0.894	INTERGENIC
X	3468711	X_3468711_INS [dm3] X_3574678_INS [dm6]	C	CTGAGT	3.050e^-4	0.894	UTR_5_PRIME AstA-R1	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	19454237	2R_19454237_SNP [dm3] 2R_23566714_SNP [dm6]	T	C	3.053e^-4	0.894	INTRON apt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19200130	3L_19200130_SNP [dm3] 3L_19207030_SNP [dm6]	G	A	3.055e^-4	0.894	INTRON fz2	TF binding site mE1_TFBS_cad
3L	14571771	3L_14571771_SNP [dm3] 3L_14578671_SNP [dm6]	C	G	3.057e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	14884665	2R_14884665_SNP [dm3] 2R_18997160_SNP [dm6]	G	T	3.059e^-4	0.894	SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad
2L	9057999	2L_9057999_INS [dm3] 2L_9057999_INS [dm6]	G	GGTCTCTACATAAAGTTTCT...	3.072e^-4	0.894	INTRON CG31708
3R	5044833	3R_5044833_SNP [dm3] 3R_9219111_SNP [dm6]	T	G	3.076e^-4	0.894	INTRON pum
2L	15438123	2L_15438123_SNP [dm3] 2L_15438123_SNP [dm6]	C	T	3.081e^-4	0.894	INTERGENIC
3R	20834602	3R_20834602_SNP [dm3] 3R_25008880_SNP [dm6]	C	G	3.084e^-4	0.894	INTRON tnc	TF binding site mE1_TFBS_chinmo
3R	7146075	3R_7146075_SNP [dm3] 3R_11320353_SNP [dm6]	T	A	3.085e^-4	0.894	INTERGENIC
2L	6510543	2L_6510543_SNP [dm3] 2L_6510543_SNP [dm6]	C	T	3.090e^-4	0.894	INTRON CG31637
2R	15125041	2R_15125041_SNP [dm3] 2R_19237536_SNP [dm6]	C	A	3.094e^-4	0.894	INTRON cora
3R	19113024	3R_19113024_SNP [dm3] 3R_23287302_SNP [dm6]	G	A	3.096e^-4	0.894	SYNONYMOUS_CODING CG17083 DOWNSTREAM CG4434	TF binding site mE1_TFBS_sens
2L	8708456	2L_8708456_SNP [dm3] 2L_8708456_SNP [dm6]	A	G	3.105e^-4	0.894	DOWNSTREAM CG9314 INTRON Hnf4	TF binding site mE1_TFBS_HSA
3R	24555097	3R_24555097_SNP [dm3] 3R_28729375_SNP [dm6]	C	G	3.108e^-4	0.894	INTRON htt
3R	24569314	3R_24569314_SNP [dm3] 3R_28743592_SNP [dm6]	C	G	3.108e^-4	0.894	NON_SYNONYMOUS_CODING AstA-R2	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	18990770	3R_18990770_SNP [dm3] 3R_23165048_SNP [dm6]	G	A	3.110e^-4	0.894	INTERGENIC
X	14226134	X_14226134_SNP [dm3] X_14332101_SNP [dm6]	T	C	3.116e^-4	0.894	INTRON dpr8	TF binding site mE1_TFBS_chinmo
2R	15671057	2R_15671057_SNP [dm3] 2R_19783552_SNP [dm6]	A	G	3.121e^-4	0.894	UTR_3_PRIME Obp56g UPSTREAM CR45231
2R	15671060	2R_15671060_SNP [dm3] 2R_19783555_SNP [dm6]	C	T	3.121e^-4	0.894	UTR_3_PRIME Obp56g UPSTREAM CR45231
2R	8096106	2R_8096106_SNP [dm3] 2R_12208601_SNP [dm6]	A	G	3.122e^-4	0.894	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15185393	3R_15185393_SNP [dm3] 3R_19359671_SNP [dm6]	G	A	3.130e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11265258	3R_11265258_SNP [dm3] 3R_15439536_SNP [dm6]	T	A	3.137e^-4	0.894	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
X	11037918	X_11037918_INS [dm3] X_11143885_INS [dm6]	G	GTG	3.141e^-4	0.894	UPSTREAM CG15201 DOWNSTREAM CG15202 & 1 other INTERGENIC
2L	12566537	2L_12566537_SNP [dm3] 2L_12566537_SNP [dm6]	C	T	3.143e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15511819	3R_15511819_SNP [dm3] 3R_19686097_SNP [dm6]	A	T	3.145e^-4	0.894	UPSTREAM Naam INTRON Naam
3L	20338347	3L_20338347_SNP [dm3] 3L_20345247_SNP [dm6]	T	C	3.146e^-4	0.894	DOWNSTREAM Spn77Bc & 1 other EXON CR45385
2L	1512911	2L_1512911_SNP [dm3] 2L_1512911_SNP [dm6]	T	C	3.148e^-4	0.894	INTERGENIC
3L	12314757	3L_12314757_SNP [dm3] 3L_12321657_SNP [dm6]	T	A	3.154e^-4	0.894	INTERGENIC
3L	16000717	3L_16000717_SNP [dm3] 3L_16007617_SNP [dm6]	C	T	3.158e^-4	0.894	NON_SYNONYMOUS_CODING mib1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	15703770	2R_15703770_SNP [dm3] 2R_19816265_SNP [dm6]	A	T	3.165e^-4	0.894	DOWNSTREAM Obp56h INTERGENIC
2L	4766252	2L_4766252_SNP [dm3] 2L_4766252_SNP [dm6]	T	C	3.169e^-4	0.894	INTRON CG15630
2R	19138664	2R_19138664_SNP [dm3] 2R_23251141_SNP [dm6]	A	G	3.176e^-4	0.894	INTERGENIC
2R	16528254	2R_16528254_SNP [dm3] 2R_20640749_SNP [dm6]	G	A	3.178e^-4	0.894	UPSTREAM maf-S & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2L	15240255	2L_15240255_DEL [dm3] 2L_15240255_DEL [dm6]	TTT	T	3.179e^-4	0.894	INTRON ZnT35C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10387324	3L_10387324_SNP [dm3] 3L_10394224_SNP [dm6]	A	C	3.180e^-4	0.894	INTERGENIC
3R	10550059	3R_10550059_SNP [dm3] 3R_14724337_SNP [dm6]	G	C	3.183e^-4	0.894	UPSTREAM kibra DOWNSTREAM CG7530 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3R	9125758	3R_9125758_SNP [dm3] 3R_13300036_SNP [dm6]	C	A	3.190e^-4	0.894	SYNONYMOUS_CODING CG8774
3R	5177582	3R_5177582_SNP [dm3] 3R_9351860_SNP [dm6]	C	A	3.193e^-4	0.894	INTRON CG45050	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10407371	2R_10407371_SNP [dm3] 2R_14519866_SNP [dm6]	A	G	3.195e^-4	0.894	INTERGENIC
3R	22162464	3R_22162464_SNP [dm3] 3R_26336742_SNP [dm6]	A	C	3.201e^-4	0.894	INTRON CG33970
X	1677168	X_1677168_SNP [dm3] X_1783135_SNP [dm6]	C	T	3.203e^-4	0.894	SYNONYMOUS_CODING Adar UTR_3_PRIME Adar INTRON CG42666	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	8986215	3R_8986215_SNP [dm3] 3R_13160493_SNP [dm6]	T	A	3.205e^-4	0.894	INTRON timeout
X	14540647	X_14540647_DEL [dm3] X_14646614_DEL [dm6]	GA	T	3.209e^-4	0.894	INTRON NetA	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9125294	3R_9125294_SNP [dm3] 3R_13299572_SNP [dm6]	G	C	3.212e^-4	0.894	SYNONYMOUS_CODING CG8774
2L	2800606	2L_2800606_SNP [dm3] 2L_2800606_SNP [dm6]	A	C	3.227e^-4	0.894	UPSTREAM Syt1 INTERGENIC
3R	15249538	3R_15249538_SNP [dm3] 3R_19423816_SNP [dm6]	C	G	3.231e^-4	0.894	UTR_3_PRIME CG3517 INTRON CG31221
2L	769959	2L_769959_SNP [dm3] 2L_769959_SNP [dm6]	T	G	3.234e^-4	0.894	INTERGENIC
3R	21074721	3R_21074721_SNP [dm3] 3R_25248999_SNP [dm6]	G	C	3.234e^-4	0.894	NON_SYNONYMOUS_CODING Nup37 UPSTREAM Nup358	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	7250834	3R_7250834_SNP [dm3] 3R_11425112_SNP [dm6]	C	T	3.239e^-4	0.894	SYNONYMOUS_CODING CG5270	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16728555	X_16728555_SNP [dm3] X_16834522_SNP [dm6]	T	A	3.247e^-4	0.894	INTRON CG13004
2L	2800538	2L_2800538_SNP [dm3] 2L_2800538_SNP [dm6]	G	A	3.249e^-4	0.894	UPSTREAM Syt1 INTERGENIC
3R	14063506	3R_14063506_SNP [dm3] 3R_18237784_SNP [dm6]	T	A	3.260e^-4	0.894	INTRON repo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14063507	3R_14063507_SNP [dm3] 3R_18237785_SNP [dm6]	C	T	3.260e^-4	0.894	INTRON repo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9606921	3R_9606921_SNP [dm3] 3R_13781199_SNP [dm6]	A	G	3.263e^-4	0.894	DOWNSTREAM CG9288 & 1 other INTRON CG9286	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	4773118	2L_4773118_SNP [dm3] 2L_4773118_SNP [dm6]	C	T	3.264e^-4	0.894	INTRON CG15630
3R	2991929	3R_2991929_SNP [dm3] 3R_7166207_SNP [dm6]	C	T	3.280e^-4	0.894	INTRON sas
3R	23535281	3R_23535281_SNP [dm3] 3R_27709559_SNP [dm6]	T	C	3.284e^-4	0.894	INTRON CG12877
X	17073482	X_17073482_SNP [dm3] X_17179449_SNP [dm6]	T	A	3.287e^-4	0.894	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14062648	3L_14062648_SNP [dm3] 3L_14069548_SNP [dm6]	A	C	3.288e^-4	0.894	INTRON CG32138
3L	20260887	3L_20260887_SNP [dm3] 3L_20267787_SNP [dm6]	T	C	3.292e^-4	0.894	SYNONYMOUS_CODING CG32228
3L	15989854	3L_15989854_SNP [dm3] 3L_15996754_SNP [dm6]	T	A	3.297e^-4	0.894	INTRON CG5830
3R	26578440	3R_26578440_SNP [dm3] 3R_30752718_SNP [dm6]	G	A	3.302e^-4	0.894	INTERGENIC
3R	24405750	3R_24405750_SNP [dm3] 3R_28580028_SNP [dm6]	C	T	3.306e^-4	0.894	DOWNSTREAM fkh INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	24521934	3R_24521934_SNP [dm3] 3R_28696212_SNP [dm6]	G	A	3.311e^-4	0.894	UPSTREAM htt DOWNSTREAM CG9990 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	4903899	2R_4903899_SNP [dm3] 2R_9016394_SNP [dm6]	T	C	3.318e^-4	0.894	SYNONYMOUS_CODING CG13744	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2735610	3L_2735610_SNP [dm3] 3L_2735610_SNP [dm6]	C	T	3.320e^-4	0.894	UPSTREAM Mrtf INTRON Mrtf
X	21372149	X_21372149_DEL [dm3] X_21501122_DEL [dm6]	AA	T	3.323e^-4	0.894	INTRON CR45082
3L	5085482	3L_5085482_SNP [dm3] 3L_5085482_SNP [dm6]	T	A	3.324e^-4	0.894	INTERGENIC
3R	24623764	3R_24623764_SNP [dm3] 3R_28798042_SNP [dm6]	A	G	3.326e^-4	0.894	INTERGENIC
2R	16818156	2R_16818156_SNP [dm3] 2R_20930651_SNP [dm6]	C	G	3.330e^-4	0.894	INTRON Rx
3R	24841345	3R_24841345_DEL [dm3] 3R_29015623_DEL [dm6]	TT	C	3.338e^-4	0.894	INTRON wat
3R	2858473	3R_2858473_DEL [dm3] 3R_7032751_DEL [dm6]	CCAGCCA	C	3.341e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12503635	2R_12503635_SNP [dm3] 2R_16616130_SNP [dm6]	A	T	3.346e^-4	0.894	INTRON CG5065
3L	762477	3L_762477_SNP [dm3] 3L_762477_SNP [dm6]	C	G	3.366e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	4031947	3L_4031947_SNP [dm3] 3L_4031947_SNP [dm6]	C	G	3.370e^-4	0.894	UTR_3_PRIME Gr64b & 1 other UPSTREAM Gr64d & 1 other
3R	3800599	3R_3800599_SNP [dm3] 3R_7974877_SNP [dm6]	A	G	3.372e^-4	0.894	INTRON CD98hc	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	10016616	3L_10016616_SNP [dm3] 3L_10023516_SNP [dm6]	A	G	3.373e^-4	0.894	INTRON dpr6
3L	12358395	3L_12358395_SNP [dm3] 3L_12365295_SNP [dm6]	G	A	3.387e^-4	0.894	INTERGENIC
3R	21075037	3R_21075037_SNP [dm3] 3R_25249315_SNP [dm6]	G	C	3.388e^-4	0.894	UPSTREAM Nup358 DOWNSTREAM Nup37 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
X	19895283	X_19895283_SNP [dm3] X_20001250_SNP [dm6]	G	A	3.391e^-4	0.894	SYNONYMOUS_CODING CG17003	TF binding site mE1_TFBS_chinmo
2R	11143643	2R_11143643_SNP [dm3] 2R_15256138_SNP [dm6]	G	A	3.401e^-4	0.894	INTRON scb	TF binding site mE1_TFBS_cad
2L	7875009	2L_7875009_SNP [dm3] 2L_7875009_SNP [dm6]	T	C	3.404e^-4	0.894	INTRON spz3	TF binding site mE1_TFBS_inv
X	19552316	X_19552316_SNP [dm3] X_19658283_SNP [dm6]	A	G	3.418e^-4	0.894	NON_SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17325292	2R_17325292_SNP [dm3] 2R_21437787_SNP [dm6]	T	G	3.423e^-4	0.894	INTRON Sdc
3L	16037087	3L_16037087_SNP [dm3] 3L_16043987_SNP [dm6]	C	T	3.425e^-4	0.894	INTRON th	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	16037089	3L_16037089_SNP [dm3] 3L_16043989_SNP [dm6]	C	T	3.425e^-4	0.894	INTRON th	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	11387422	2L_11387422_SNP [dm3] 2L_11387422_SNP [dm6]	A	G	3.443e^-4	0.894	DOWNSTREAM CR43681 INTERGENIC	regulatory region REDfly_CRMs
2R	15070156	2R_15070156_SNP [dm3] 2R_19182651_SNP [dm6]	C	G	3.444e^-4	0.894	INTRON hppy
3L	2390132	3L_2390132_SNP [dm3] 3L_2390132_SNP [dm6]	A	G	3.445e^-4	0.894	SYNONYMOUS_CODING CG32299 UTR_3_PRIME CG32298 DOWNSTREAM CG42787 INTRON CG45186
2L	11387419	2L_11387419_SNP [dm3] 2L_11387419_SNP [dm6]	A	T	3.449e^-4	0.894	DOWNSTREAM CR43681 INTERGENIC	regulatory region REDfly_CRMs
X	17073466	X_17073466_SNP [dm3] X_17179433_SNP [dm6]	T	A	3.451e^-4	0.894	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3549698	2L_3549698_SNP [dm3] 2L_3549698_SNP [dm6]	G	A	3.452e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	4025303	2L_4025303_SNP [dm3] 2L_4025303_SNP [dm6]	C	A	3.454e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12361337	3L_12361337_SNP [dm3] 3L_12368237_SNP [dm6]	G	A	3.457e^-4	0.894	DOWNSTREAM Ncc69 INTERGENIC
2L	9965541	2L_9965541_SNP [dm3] 2L_9965541_SNP [dm6]	A	G	3.459e^-4	0.894	SYNONYMOUS_CODING Dref
2L	3548445	2L_3548445_SNP [dm3] 2L_3548445_SNP [dm6]	T	C	3.461e^-4	0.894	DOWNSTREAM drm INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1513458	2L_1513458_SNP [dm3] 2L_1513458_SNP [dm6]	G	A	3.462e^-4	0.894	INTERGENIC
2L	7188543	2L_7188543_SNP [dm3] 2L_7188543_SNP [dm6]	T	C	3.472e^-4	0.894	UPSTREAM CG4496 INTRON CG4496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14737156	3R_14737156_SNP [dm3] 3R_18911434_SNP [dm6]	C	G	3.473e^-4	0.894	SYNONYMOUS_CODING CG14291 DOWNSTREAM EndoA	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4733615	2L_4733615_SNP [dm3] 2L_4733615_SNP [dm6]	A	G	3.473e^-4	0.894	NON_SYNONYMOUS_CODING CG15631 DOWNSTREAM CG15630	TF binding site mE1_TFBS_sens
2R	6736207	2R_6736207_SNP [dm3] 2R_10848702_SNP [dm6]	T	C	3.482e^-4	0.894	NON_SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad
3L	18362718	3L_18362718_SNP [dm3] 3L_18369618_SNP [dm6]	T	C	3.485e^-4	0.894	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	2735613	3L_2735613_SNP [dm3] 3L_2735613_SNP [dm6]	A	G	3.487e^-4	0.894	UPSTREAM Mrtf INTRON Mrtf
3L	14367875	3L_14367875_SNP [dm3] 3L_14374775_SNP [dm6]	A	C	3.491e^-4	0.894	INTERGENIC
3L	12314717	3L_12314717_SNP [dm3] 3L_12321617_SNP [dm6]	G	C	3.492e^-4	0.894	INTERGENIC
3R	21822558	3R_21822558_INS [dm3] 3R_25996836_INS [dm6]	T	TT	3.496e^-4	0.894	FRAME_SHIFT CG43116 UPSTREAM E_spl_mdelta-HLH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	19454793	3L_19454793_SNP [dm3] 3L_19461693_SNP [dm6]	G	C	3.498e^-4	0.894	INTERGENIC
2L	8614393	2L_8614393_SNP [dm3] 2L_8614393_SNP [dm6]	A	G	3.499e^-4	0.894	INTRON Sema-1a
X	15327834	X_15327834_SNP [dm3] X_15433801_SNP [dm6]	A	T	3.507e^-4	0.894	INTRON Cngl
3L	20828861	3L_20828861_SNP [dm3] 3L_20835761_SNP [dm6]	A	T	3.508e^-4	0.894	UTR_3_PRIME Pka-R1 UPSTREAM CG3288 DOWNSTREAM CR45384 & 1 other
2L	1503076	2L_1503076_SNP [dm3] 2L_1503076_SNP [dm6]	A	G	3.516e^-4	0.894	UPSTREAM CG7420 INTRON CR44064	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8417200	X_8417200_SNP [dm3] X_8523167_SNP [dm6]	T	C	3.518e^-4	0.894	INTRON Nrg	TF binding site BDTNP1_TFBS_da
X	13934101	X_13934101_SNP [dm3] X_14040068_SNP [dm6]	C	T	3.528e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13759733	2R_13759733_SNP [dm3] 2R_17872228_SNP [dm6]	A	T	3.532e^-4	0.894	UPSTREAM Mapmodulin INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	23535187	3R_23535187_SNP [dm3] 3R_27709465_SNP [dm6]	G	A	3.540e^-4	0.894	INTRON CG12877	TF binding site mE1_TFBS_cad
3L	15998253	3L_15998253_SNP [dm3] 3L_16005153_SNP [dm6]	C	T	3.554e^-4	0.894	UPSTREAM mRpS31 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	1460765	3L_1460765_SNP [dm3] 3L_1460765_SNP [dm6]	G	C	3.556e^-4	0.894	INTRON Ptp61F EXON CR44842	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16844829	X_16844829_SNP [dm3] X_16950796_SNP [dm6]	T	C	3.569e^-4	0.894	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
X	16844840	X_16844840_SNP [dm3] X_16950807_SNP [dm6]	G	A	3.569e^-4	0.894	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
X	16844844	X_16844844_SNP [dm3] X_16950811_SNP [dm6]	C	G	3.569e^-4	0.894	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
3L	11316836	3L_11316836_SNP [dm3] 3L_11323736_SNP [dm6]	A	T	3.606e^-4	0.894	DOWNSTREAM CR44723 EXON CR44721 & 1 other
3L	20345759	3L_20345759_SNP [dm3] 3L_20352659_SNP [dm6]	G	T	3.609e^-4	0.894	UPSTREAM CG5618 DOWNSTREAM eRF1 INTRON eRF1
2R	13939806	2R_13939806_SNP [dm3] 2R_18052301_SNP [dm6]	C	A	3.609e^-4	0.894	UPSTREAM Muc55B DOWNSTREAM CG10911 INTERGENIC
2R	16471797	2R_16471797_SNP [dm3] 2R_20584292_SNP [dm6]	T	C	3.615e^-4	0.894	UPSTREAM qsm & 4 others DOWNSTREAM mir-2498 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	18386141	2R_18386141_SNP [dm3] 2R_22498636_SNP [dm6]	C	T	3.620e^-4	0.894	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12988046	X_12988046_SNP [dm3] X_13094013_SNP [dm6]	T	C	3.624e^-4	0.894	UPSTREAM CG2200 DOWNSTREAM lic INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8898174	2R_8898174_SNP [dm3] 2R_13010669_SNP [dm6]	C	T	3.629e^-4	0.894	INTERGENIC
2R	20136788	2R_20136788_SNP [dm3] 2R_24249265_SNP [dm6]	A	G	3.642e^-4	0.894	SYNONYMOUS_CODING Ir60a INTRON nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21237250	3R_21237250_DEL [dm3] 3R_25411528_DEL [dm6]	CCCTG	T	3.653e^-4	0.894	INTRON Fur1
3R	9125126	3R_9125126_SNP [dm3] 3R_13299404_SNP [dm6]	A	C	3.662e^-4	0.894	SYNONYMOUS_CODING CG8774	TF binding site mE1_TFBS_HSA
3R	9209124	3R_9209124_SNP [dm3] 3R_13383402_SNP [dm6]	T	C	3.663e^-4	0.894	UTR_5_PRIME Droj2 INTRON Droj2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14817598	2R_14817598_SNP [dm3] 2R_18930093_SNP [dm6]	G	C	3.666e^-4	0.894	INTRON sano
2L	7072074	2L_7072074_SNP [dm3] 2L_7072074_SNP [dm6]	T	G	3.666e^-4	0.894	INTRON Pvf2
2L	5026111	2L_5026111_SNP [dm3] 2L_5026111_SNP [dm6]	C	T	3.666e^-4	0.894	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	9792289	3R_9792289_SNP [dm3] 3R_13966567_SNP [dm6]	G	A	3.671e^-4	0.894	SPLICE_SITE_REGION Orc2 SYNONYMOUS_CODING Orc2 DOWNSTREAM rdx
2L	5417350	2L_5417350_SNP [dm3] 2L_5417350_SNP [dm6]	A	C	3.673e^-4	0.894	DOWNSTREAM H15 INTERGENIC	TF binding site mE1_TFBS_Kr
X	3620206	X_3620206_DEL [dm3] X_3726173_DEL [dm6]	TT	T	3.680e^-4	0.894	INTRON tlk	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	2254777	3L_2254777_INS [dm3] 3L_2254777_INS [dm6]	A	AT	3.680e^-4	0.894	INTRON CG1275	TF binding site mE1_TFBS_cad
2R	19133250	2R_19133250_SNP [dm3] 2R_23245727_SNP [dm6]	A	T	3.700e^-4	0.894	UPSTREAM yip3 DOWNSTREAM RpL22-like INTERGENIC
3L	7710130	3L_7710130_SNP [dm3] 3L_7717030_SNP [dm6]	C	T	3.702e^-4	0.894	UPSTREAM Ank2 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12671336	3R_12671336_SNP [dm3] 3R_16845614_SNP [dm6]	A	C	3.704e^-4	0.894	INTRON iab-8	TF binding site mE1_TFBS_cad
2R	8021638	2R_8021638_SNP [dm3] 2R_12134133_SNP [dm6]	A	G	3.704e^-4	0.894	INTERGENIC
X	9657929	X_9657929_SNP [dm3] X_9763896_SNP [dm6]	T	C	3.724e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	21100004	3R_21100004_SNP [dm3] 3R_25274282_SNP [dm6]	A	G	3.734e^-4	0.894	SYNONYMOUS_CODING CG11878	TF binding site mE1_TFBS_HSA
2L	19211696	2L_19211696_SNP [dm3] 2L_19211696_SNP [dm6]	T	G	3.739e^-4	0.894	INTERGENIC
2R	14706437	2R_14706437_SNP [dm3] 2R_18818932_SNP [dm6]	A	C	3.742e^-4	0.894	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2254539	3L_2254539_SNP [dm3] 3L_2254539_SNP [dm6]	A	C	3.745e^-4	0.894	INTRON CG1275	TF binding site mE1_TFBS_cad
X	14950698	X_14950698_SNP [dm3] X_15056665_SNP [dm6]	C	A	3.754e^-4	0.894	NON_SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
3R	8891604	3R_8891604_SNP [dm3] 3R_13065882_SNP [dm6]	T	A	3.755e^-4	0.894	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	5907343	2L_5907343_SNP [dm3] 2L_5907343_SNP [dm6]	T	C	3.757e^-4	0.894	INTRON bchs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	14154166	X_14154166_SNP [dm3] X_14260133_SNP [dm6]	A	G	3.757e^-4	0.894	INTERGENIC
3R	14333603	3R_14333603_SNP [dm3] 3R_18507881_SNP [dm6]	G	T	3.765e^-4	0.894	INTRON fru
3L	2147936	3L_2147936_SNP [dm3] 3L_2147936_SNP [dm6]	A	G	3.770e^-4	0.894	INTRON zormin
2R	15703562	2R_15703562_DEL [dm3] 2R_19816057_DEL [dm6]	CCTAGTTGGCTTAGTT...	C	3.770e^-4	0.894	UTR_3_PRIME Obp56h
2R	15703597	2R_15703597_SNP [dm3] 2R_19816092_SNP [dm6]	T	G	3.770e^-4	0.894	UTR_3_PRIME Obp56h
3R	11722603	3R_11722603_SNP [dm3] 3R_15896881_SNP [dm6]	G	T	3.771e^-4	0.894	UPSTREAM CG14877 DOWNSTREAM glob1 INTERGENIC
2R	13940133	2R_13940133_SNP [dm3] 2R_18052628_SNP [dm6]	C	T	3.773e^-4	0.894	UTR_3_PRIME CG10911 UPSTREAM Muc55B	TF binding site mE1_TFBS_cad
3L	2735601	3L_2735601_SNP [dm3] 3L_2735601_SNP [dm6]	A	G	3.776e^-4	0.894	UPSTREAM Mrtf INTRON Mrtf
2R	19758534	2R_19758534_INS [dm3] 2R_23871011_INS [dm6]	T	TTGTGGCT	3.776e^-4	0.894	INTRON ken	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10900754	2L_10900754_SNP [dm3] 2L_10900754_SNP [dm6]	G	A	3.782e^-4	0.894	UTR_3_PRIME CG14070
3L	10346036	3L_10346036_SNP [dm3] 3L_10352936_SNP [dm6]	A	C	3.782e^-4	0.894	INTRON CR44327
2R	8898205	2R_8898205_SNP [dm3] 2R_13010700_SNP [dm6]	C	A	3.784e^-4	0.894	INTERGENIC
3R	12358359	3R_12358359_SNP [dm3] 3R_16532637_SNP [dm6]	A	G	3.785e^-4	0.894	INTRON CG42342
2L	14873144	2L_14873144_SNP [dm3] 2L_14873144_SNP [dm6]	T	A	3.786e^-4	0.894	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	7220230	2R_7220230_SNP [dm3] 2R_11332725_SNP [dm6]	A	T	3.790e^-4	0.894	INTRON sha	TF binding site mE1_TFBS_cad
3R	24313591	3R_24313591_SNP [dm3] 3R_28487869_SNP [dm6]	T	C	3.791e^-4	0.894	SYNONYMOUS_CODING Dhc98D
2L	5026057	2L_5026057_SNP [dm3] 2L_5026057_SNP [dm6]	C	T	3.793e^-4	0.894	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	9893089	2L_9893089_SNP [dm3] 2L_9893089_SNP [dm6]	A	T	3.794e^-4	0.894	DOWNSTREAM Uhg2 & 1 other INTRON mtDNA-helicase	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19225645	3R_19225645_SNP [dm3] 3R_23399923_SNP [dm6]	C	A	3.803e^-4	0.894	UPSTREAM CR44323 INTERGENIC
2R	14572879	2R_14572879_SNP [dm3] 2R_18685374_SNP [dm6]	C	T	3.811e^-4	0.894	NON_SYNONYMOUS_CODING CG44433	TF binding site mE1_TFBS_sens
2R	5941761	2R_5941761_SNP [dm3] 2R_10054256_SNP [dm6]	G	T	3.816e^-4	0.894	UTR_3_PRIME Def UPSTREAM CR44298 INTRON magu	TF binding site mE1_TFBS_cad
2R	17776150	2R_17776150_SNP [dm3] 2R_21888645_SNP [dm6]	C	A	3.821e^-4	0.894	INTRON Fili
2L	8958740	2L_8958740_SNP [dm3] 2L_8958740_SNP [dm6]	G	A	3.825e^-4	0.894	UPSTREAM CG31886 DOWNSTREAM CG9525 INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	21512067	3R_21512067_SNP [dm3] 3R_25686345_SNP [dm6]	G	A	3.854e^-4	0.894	SYNONYMOUS_CODING CLS	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	3548325	2L_3548325_SNP [dm3] 2L_3548325_SNP [dm6]	C	T	3.857e^-4	0.894	UTR_3_PRIME drm DOWNSTREAM drm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	14999470	X_14999470_DEL [dm3] X_15105437_DEL [dm6]	ATAA	T	3.860e^-4	0.894	INTRON Rab3-GEF	TF binding site BDTNP1_TFBS_dl
2R	19886870	2R_19886870_SNP [dm3] 2R_23999347_SNP [dm6]	G	T	3.862e^-4	0.894	INTRON Unc-89	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	15734117	2R_15734117_SNP [dm3] 2R_19846612_SNP [dm6]	G	T	3.872e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17676886	2R_17676886_SNP [dm3] 2R_21789381_SNP [dm6]	A	C	3.873e^-4	0.894	DOWNSTREAM lox2 INTERGENIC
2R	10859223	2R_10859223_INS [dm3] 2R_14971718_INS [dm6]	T	TG	3.886e^-4	0.894	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13942643	2R_13942643_SNP [dm3] 2R_18055138_SNP [dm6]	C	T	3.890e^-4	0.894	DOWNSTREAM CG10912 EXON CR45313	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13131356	2R_13131356_SNP [dm3] 2R_17243851_SNP [dm6]	G	T	3.891e^-4	0.894	INTRON mbl	TF binding site mE1_TFBS_inv
3R	14717872	3R_14717872_SNP [dm3] 3R_18892150_SNP [dm6]	A	G	3.901e^-4	0.894	INTERGENIC
X	11168997	X_11168997_SNP [dm3] X_11274964_SNP [dm6]	G	T	3.902e^-4	0.894	INTRON CG44422
3L	8063557	3L_8063557_SNP [dm3] 3L_8070457_SNP [dm6]	G	A	3.906e^-4	0.894	UPSTREAM Ect4 & 1 other INTRON Ect4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7453569	2R_7453569_SNP [dm3] 2R_11566064_SNP [dm6]	A	G	3.906e^-4	0.894	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2L	3746294	2L_3746294_SNP [dm3] 2L_3746294_SNP [dm6]	C	T	3.908e^-4	0.894	SYNONYMOUS_CODING CG10019	TF binding site mE1_TFBS_chinmo
3R	22453486	3R_22453486_SNP [dm3] 3R_26627764_SNP [dm6]	A	T	3.911e^-4	0.894	DOWNSTREAM TwdlK INTERGENIC
2R	10892938	2R_10892938_SNP [dm3] 2R_15005433_SNP [dm6]	C	G	3.925e^-4	0.894	INTERGENIC
2L	15239278	2L_15239278_SNP [dm3] 2L_15239278_SNP [dm6]	A	G	3.927e^-4	0.894	INTRON ZnT35C
2R	12128733	2R_12128733_SNP [dm3] 2R_16241228_SNP [dm6]	G	A	3.932e^-4	0.894	SYNONYMOUS_CODING CG15708 UPSTREAM krimp
2L	8331535	2L_8331535_SNP [dm3] 2L_8331535_SNP [dm6]	A	G	3.934e^-4	0.894	INTRON CG14275
3R	6968256	3R_6968256_SNP [dm3] 3R_11142534_SNP [dm6]	T	C	3.939e^-4	0.894	INTERGENIC
3L	12357338	3L_12357338_SNP [dm3] 3L_12364238_SNP [dm6]	A	T	3.941e^-4	0.894	INTERGENIC
3R	21822567	3R_21822567_SNP [dm3] 3R_25996845_SNP [dm6]	A	G	3.942e^-4	0.894	SYNONYMOUS_CODING CG43116 UPSTREAM E_spl_mdelta-HLH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	15249142	X_15249142_SNP [dm3] X_15355109_SNP [dm6]	G	C	3.945e^-4	0.894	INTRON acj6
3L	6452065	3L_6452065_SNP [dm3] 3L_6458965_SNP [dm6]	A	T	3.950e^-4	0.894	INTRON CG42747
3R	9175088	3R_9175088_SNP [dm3] 3R_13349366_SNP [dm6]	G	T	3.955e^-4	0.894	INTERGENIC
2R	9724998	2R_9724998_SNP [dm3] 2R_13837493_SNP [dm6]	C	A	3.957e^-4	0.894	INTRON CG6347
3R	21729349	3R_21729349_SNP [dm3] 3R_25903627_SNP [dm6]	G	C	3.960e^-4	0.894	SYNONYMOUS_CODING CG31089 INTRON CR43259
3R	19862588	3R_19862588_SNP [dm3] 3R_24036866_SNP [dm6]	G	T	3.961e^-4	0.894	INTRON Miro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	10072916	2R_10072916_SNP [dm3] 2R_14185411_SNP [dm6]	C	G	3.971e^-4	0.894	UTR_5_PRIME CG30069	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22762584	3R_22762584_SNP [dm3] 3R_26936862_SNP [dm6]	A	G	3.974e^-4	0.894	INTRON sda
3R	22762594	3R_22762594_SNP [dm3] 3R_26936872_SNP [dm6]	G	T	3.974e^-4	0.894	INTRON sda
3L	10159081	3L_10159081_SNP [dm3] 3L_10165981_SNP [dm6]	C	T	3.976e^-4	0.894	UTR_3_PRIME CG6628 INTRON dpr10
X	12563868	X_12563868_SNP [dm3] X_12669835_SNP [dm6]	C	T	3.981e^-4	0.894	INTRON Tis11	TF binding site BDTNP1_TFBS_dl
3R	23177992	3R_23177992_DEL [dm3] 3R_27352270_DEL [dm6]	AA	A	3.981e^-4	0.894	INTRON CG42534
3R	9675176	3R_9675176_SNP [dm3] 3R_13849454_SNP [dm6]	G	A	3.982e^-4	0.894	INTERGENIC
2L	11387421	2L_11387421_SNP [dm3] 2L_11387421_SNP [dm6]	A	G	3.983e^-4	0.894	DOWNSTREAM CR43681 INTERGENIC	regulatory region REDfly_CRMs
3L	2913384	3L_2913384_SNP [dm3] 3L_2913384_SNP [dm6]	C	G	3.984e^-4	0.894	INTRON Shab
3R	10436486	3R_10436486_DEL [dm3] 3R_14610764_DEL [dm6]	AA	C	3.989e^-4	0.894	INTRON CG14853
3L	9537715	3L_9537715_DEL [dm3] 3L_9544615_DEL [dm6]	CA	C	3.997e^-4	0.894	UPSTREAM Ir67a INTERGENIC
3L	20435976	3L_20435976_SNP [dm3] 3L_20442876_SNP [dm6]	T	A	3.997e^-4	0.894	INTRON CG5910	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14267216	3R_14267216_SNP [dm3] 3R_18441494_SNP [dm6]	A	G	4.000e^-4	0.894	INTRON fru
X	22044024	X_22044024_SNP [dm3] X_22642188_SNP [dm6]	T	C	4.004e^-4	0.894	INTERGENIC	transposable element FlyBase
3R	9163496	3R_9163496_SNP [dm3] 3R_13337774_SNP [dm6]	G	C	4.007e^-4	0.894	UPSTREAM PK2-R1 INTERGENIC
X	8668251	X_8668251_SNP [dm3] X_8774218_SNP [dm6]	G	A	4.007e^-4	0.894	INTRON Lim1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15703397	2R_15703397_SNP [dm3] 2R_19815892_SNP [dm6]	A	G	4.008e^-4	0.894	SYNONYMOUS_CODING Obp56h	TF binding site mE1_TFBS_sens
2R	13948383	2R_13948383_SNP [dm3] 2R_18060878_SNP [dm6]	G	C	4.012e^-4	0.894	INTERGENIC
2R	20159567	2R_20159567_SNP [dm3] 2R_24272044_SNP [dm6]	C	A	4.012e^-4	0.894	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3762087	2L_3762087_SNP [dm3] 2L_3762087_SNP [dm6]	G	A	4.015e^-4	0.894	SYNONYMOUS_CODING CG43707	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	24578983	3R_24578983_SNP [dm3] 3R_28753261_SNP [dm6]	G	C	4.015e^-4	0.894	INTERGENIC
3R	24313483	3R_24313483_SNP [dm3] 3R_28487761_SNP [dm6]	G	T	4.017e^-4	0.894	SYNONYMOUS_CODING Dhc98D
3R	24552537	3R_24552537_SNP [dm3] 3R_28726815_SNP [dm6]	C	G	4.021e^-4	0.894	INTRON htt
2L	15371097	2L_15371097_SNP [dm3] 2L_15371097_SNP [dm6]	T	A	4.024e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	10111437	X_10111437_SNP [dm3] X_10217404_SNP [dm6]	A	C	4.030e^-4	0.894	UPSTREAM CR45629 & 1 other DOWNSTREAM CG15308 & 1 other INTERGENIC
3R	18990903	3R_18990903_SNP [dm3] 3R_23165181_SNP [dm6]	G	T	4.031e^-4	0.894	INTERGENIC
3L	4339738	3L_4339738_DEL [dm3] 3L_4339738_DEL [dm6]	AAC	G	4.033e^-4	0.894	INTRON Cip4
3L	4339743	3L_4339743_MNP [dm3] 3L_4339743_MNP [dm6]	ATT	TGA	4.033e^-4	0.894	INTRON Cip4
2L	15125163	2L_15125163_SNP [dm3] 2L_15125163_SNP [dm6]	G	A	4.035e^-4	0.894	INTERGENIC
2L	15283198	2L_15283198_SNP [dm3] 2L_15283198_SNP [dm6]	A	G	4.044e^-4	0.894	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25256581	3R_25256581_SNP [dm3] 3R_29430859_SNP [dm6]	G	A	4.052e^-4	0.894	INTRON Ptp99A
3L	12419648	3L_12419648_SNP [dm3] 3L_12426548_SNP [dm6]	A	C	4.059e^-4	0.894	INTRON toe
X	2223539	X_2223539_INS [dm3] X_2329506_INS [dm6]	T	GGAAC	4.070e^-4	0.894	UPSTREAM CR33218 DOWNSTREAM CG2854 INTRON phl
2R	7508292	2R_7508292_SNP [dm3] 2R_11620787_SNP [dm6]	A	G	4.072e^-4	0.894	UTR_3_PRIME CG9005	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	6597977	2L_6597977_SNP [dm3] 2L_6597977_SNP [dm6]	G	T	4.073e^-4	0.894	INTRON CG11319
2R	15449920	2R_15449920_SNP [dm3] 2R_19562415_SNP [dm6]	A	T	4.087e^-4	0.894	INTRON sm
3R	21095475	3R_21095475_SNP [dm3] 3R_25269753_SNP [dm6]	T	A	4.093e^-4	0.894	UPSTREAM CG11889 & 1 other INTRON CR45214 & 1 other
3R	10436507	3R_10436507_SNP [dm3] 3R_14610785_SNP [dm6]	T	A	4.093e^-4	0.894	INTRON CG14853
3L	2045115	3L_2045115_SNP [dm3] 3L_2045115_SNP [dm6]	T	C	4.093e^-4	0.894	SPLICE_SITE_REGION sls SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad
3L	5312283	3L_5312283_SNP [dm3] 3L_5319183_SNP [dm6]	A	C	4.106e^-4	0.894	INTERGENIC
3L	8686277	3L_8686277_SNP [dm3] 3L_8693177_SNP [dm6]	A	G	4.112e^-4	0.894	EXON CR44526	TF binding site mE1_TFBS_cad
2L	8215382	2L_8215382_SNP [dm3] 2L_8215382_SNP [dm6]	A	G	4.117e^-4	0.894	UPSTREAM CG8349 DOWNSTREAM CG8353 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9968964	2L_9968964_SNP [dm3] 2L_9968964_SNP [dm6]	C	T	4.123e^-4	0.894	DOWNSTREAM RpL13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8898177	2R_8898177_SNP [dm3] 2R_13010672_SNP [dm6]	A	T	4.127e^-4	0.894	INTERGENIC
3L	12361336	3L_12361336_SNP [dm3] 3L_12368236_SNP [dm6]	A	G	4.127e^-4	0.894	DOWNSTREAM Ncc69 INTERGENIC
2L	5654394	2L_5654394_SNP [dm3] 2L_5654394_SNP [dm6]	A	G	4.150e^-4	0.894	INTRON CG31646
3R	14709622	3R_14709622_SNP [dm3] 3R_18883900_SNP [dm6]	T	C	4.151e^-4	0.894	INTERGENIC
3R	17081701	3R_17081701_SNP [dm3] 3R_21255979_SNP [dm6]	A	G	4.153e^-4	0.894	INTRON ETHR
2L	11321928	2L_11321928_SNP [dm3] 2L_11321928_SNP [dm6]	G	C	4.158e^-4	0.894	INTERGENIC
2L	13311968	2L_13311968_DEL [dm3] 2L_13311968_DEL [dm6]	AC	A	4.162e^-4	0.894	INTRON CG43778
3R	23134456	3R_23134456_SNP [dm3] 3R_27308734_SNP [dm6]	C	T	4.168e^-4	0.894	SYNONYMOUS_CODING CG3339
3R	9006660	3R_9006660_SNP [dm3] 3R_13180938_SNP [dm6]	T	C	4.170e^-4	0.894	UPSTREAM CG8138 INTERGENIC
3R	9110600	3R_9110600_SNP [dm3] 3R_13284878_SNP [dm6]	A	G	4.175e^-4	0.894	DOWNSTREAM CG15888 & 1 other INTERGENIC
2R	8078325	2R_8078325_SNP [dm3] 2R_12190820_SNP [dm6]	G	T	4.176e^-4	0.894	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
3R	5042016	3R_5042016_SNP [dm3] 3R_9216294_SNP [dm6]	A	C	4.179e^-4	0.894	INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	15125021	2R_15125021_SNP [dm3] 2R_19237516_SNP [dm6]	C	A	4.181e^-4	0.894	INTRON cora
2R	17676875	2R_17676875_SNP [dm3] 2R_21789370_SNP [dm6]	T	C	4.184e^-4	0.894	DOWNSTREAM lox2 INTERGENIC
X	7781717	X_7781717_SNP [dm3] X_7887684_SNP [dm6]	G	A	4.185e^-4	0.894	SYNONYMOUS_CODING CG10932 DOWNSTREAM Ir7g	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	13665279	2L_13665279_SNP [dm3] 2L_13665279_SNP [dm6]	G	T	4.186e^-4	0.894	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	10874662	3R_10874662_SNP [dm3] 3R_15048940_SNP [dm6]	A	G	4.187e^-4	0.894	INTERGENIC
3L	12358280	3L_12358280_SNP [dm3] 3L_12365180_SNP [dm6]	A	C	4.198e^-4	0.894	INTERGENIC
3R	23575701	3R_23575701_SNP [dm3] 3R_27749979_SNP [dm6]	T	C	4.206e^-4	0.894	INTERGENIC
3R	9617595	3R_9617595_DEL [dm3] 3R_13791873_DEL [dm6]	AA	A	4.211e^-4	0.894	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	21411101	3R_21411101_SNP [dm3] 3R_25585379_SNP [dm6]	T	C	4.213e^-4	0.894	INTRON msi
3R	14334388	3R_14334388_SNP [dm3] 3R_18508666_SNP [dm6]	G	T	4.214e^-4	0.894	INTRON fru
2R	15703853	2R_15703853_SNP [dm3] 2R_19816348_SNP [dm6]	C	A	4.214e^-4	0.894	DOWNSTREAM Obp56h INTERGENIC
2L	8196367	2L_8196367_SNP [dm3] 2L_8196367_SNP [dm6]	G	A	4.218e^-4	0.894	SYNONYMOUS_CODING CG8475 UPSTREAM CG8460 EXON CR44116	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	10850673	2R_10850673_SNP [dm3] 2R_14963168_SNP [dm6]	A	T	4.219e^-4	0.894	UPSTREAM ckn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	13639088	2R_13639088_SNP [dm3] 2R_17751583_SNP [dm6]	A	G	4.219e^-4	0.894	INTRON CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15462679	2R_15462679_SNP [dm3] 2R_19575174_SNP [dm6]	A	T	4.221e^-4	0.894	INTRON sm
2R	8092781	2R_8092781_SNP [dm3] 2R_12205276_SNP [dm6]	C	T	4.222e^-4	0.894	UPSTREAM CR45276 INTERGENIC
2R	20872105	2R_20872105_SNP [dm3] 2R_24984582_SNP [dm6]	G	C	4.233e^-4	0.894	UTR_5_PRIME emp INTRON emp	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
X	1680409	X_1680409_SNP [dm3] X_1786376_SNP [dm6]	T	C	4.238e^-4	0.894	UTR_3_PRIME Adar INTRON CG42666
3L	1111385	3L_1111385_SNP [dm3] 3L_1111385_SNP [dm6]	A	C	4.239e^-4	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	1595626	2R_1595626_SNP [dm3] 2R_5708121_SNP [dm6]	T	A	4.240e^-4	0.894	INTRON ap	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
2R	17639707	2R_17639707_SNP [dm3] 2R_21752202_SNP [dm6]	A	G	4.241e^-4	0.894	INTERGENIC
3L	11048247	3L_11048247_SNP [dm3] 3L_11055147_SNP [dm6]	C	T	4.250e^-4	0.894	UPSTREAM CG7888 INTRON CG7888
3R	19113093	3R_19113093_SNP [dm3] 3R_23287371_SNP [dm6]	A	G	4.251e^-4	0.894	SYNONYMOUS_CODING CG17083 DOWNSTREAM CG4434	TF binding site mE1_TFBS_sens
2L	14628186	2L_14628186_SNP [dm3] 2L_14628186_SNP [dm6]	T	A	4.265e^-4	0.894	INTRON osp	TF binding site mE1_TFBS_HSA
X	5335703	X_5335703_SNP [dm3] X_5441670_SNP [dm6]	C	G	4.271e^-4	0.894	INTERGENIC
X	3468706	X_3468706_SNP [dm3] X_3574673_SNP [dm6]	A	C	4.272e^-4	0.894	UTR_5_PRIME AstA-R1	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	424672	3R_424672_SNP [dm3] 3R_4598950_SNP [dm6]	T	A	4.273e^-4	0.894	INTRON CR44317	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1424718	3L_1424718_SNP [dm3] 3L_1424718_SNP [dm6]	T	C	4.275e^-4	0.894	INTRON Ptp61F
2R	12340668	2R_12340668_SNP [dm3] 2R_16453163_SNP [dm6]	C	T	4.278e^-4	0.894	INTERGENIC
2R	14493636	2R_14493636_SNP [dm3] 2R_18606131_SNP [dm6]	A	T	4.285e^-4	0.894	INTRON GEFmeso	TF binding site mE1_TFBS_sbb
X	17072690	X_17072690_SNP [dm3] X_17178657_SNP [dm6]	G	T	4.291e^-4	0.894	UTR_5_PRIME baz INTRON baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15283179	2L_15283179_SNP [dm3] 2L_15283179_SNP [dm6]	C	A	4.304e^-4	0.894	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12361245	3L_12361245_SNP [dm3] 3L_12368145_SNP [dm6]	T	G	4.325e^-4	0.894	DOWNSTREAM Ncc69 INTERGENIC
2L	11321929	2L_11321929_SNP [dm3] 2L_11321929_SNP [dm6]	C	T	4.326e^-4	0.894	INTERGENIC
3L	14207284	3L_14207284_SNP [dm3] 3L_14214184_SNP [dm6]	T	C	4.329e^-4	0.894	INTRON nuf	TF binding site mE1_TFBS_inv
2L	10232803	2L_10232803_SNP [dm3] 2L_10232803_SNP [dm6]	C	A	4.331e^-4	0.894	INTRON eEF1delta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	13803856	2L_13803856_SNP [dm3] 2L_13803856_SNP [dm6]	G	A	4.333e^-4	0.894	UTR_5_PRIME CAH1
2L	15027829	2L_15027829_SNP [dm3] 2L_15027829_SNP [dm6]	T	C	4.340e^-4	0.894	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
3R	9036107	3R_9036107_SNP [dm3] 3R_13210385_SNP [dm6]	G	C	4.343e^-4	0.894	INTRON CG8483
3R	24249592	3R_24249592_SNP [dm3] 3R_28423870_SNP [dm6]	G	T	4.344e^-4	0.894	INTRON beat-VI
3L	18745915	3L_18745915_SNP [dm3] 3L_18752815_SNP [dm6]	C	T	4.345e^-4	0.894	SYNONYMOUS_CODING ftz-f1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23134447	3R_23134447_SNP [dm3] 3R_27308725_SNP [dm6]	T	C	4.350e^-4	0.894	SYNONYMOUS_CODING CG3339
X	5217037	X_5217037_SNP [dm3] X_5323004_SNP [dm6]	A	T	4.353e^-4	0.894	UPSTREAM Rnp4F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11460987	3L_11460987_SNP [dm3] 3L_11467887_SNP [dm6]	T	C	4.370e^-4	0.894	INTERGENIC
3R	21074638	3R_21074638_SNP [dm3] 3R_25248916_SNP [dm6]	G	A	4.375e^-4	0.894	SYNONYMOUS_CODING Nup37 UPSTREAM Nup358	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	5406801	2L_5406801_SNP [dm3] 2L_5406801_SNP [dm6]	C	G	4.376e^-4	0.894	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24608650	3R_24608650_SNP [dm3] 3R_28782928_SNP [dm6]	G	C	4.380e^-4	0.894	INTERGENIC
3L	12357296	3L_12357296_DEL [dm3] 3L_12364196_DEL [dm6]	GGACAC	G	4.383e^-4	0.894	INTERGENIC
3L	14206909	3L_14206909_SNP [dm3] 3L_14213809_SNP [dm6]	C	G	4.384e^-4	0.894	INTRON nuf
3L	4031904	3L_4031904_SNP [dm3] 3L_4031904_SNP [dm6]	G	C	4.389e^-4	0.894	SYNONYMOUS_CODING Gr64c UTR_3_PRIME Gr64b UPSTREAM Gr64d & 1 other
2R	5953091	2R_5953091_SNP [dm3] 2R_10065586_SNP [dm6]	T	G	4.390e^-4	0.894	SYNONYMOUS_CODING CG2292	TF binding site mE1_TFBS_sens
2L	3548300	2L_3548300_SNP [dm3] 2L_3548300_SNP [dm6]	C	A	4.390e^-4	0.894	UTR_3_PRIME drm DOWNSTREAM drm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18729695	2R_18729695_SNP [dm3] 2R_22842172_SNP [dm6]	C	T	4.394e^-4	0.894	INTRON CG9826	TF binding site mE1_TFBS_cad
3R	23451302	3R_23451302_SNP [dm3] 3R_27625580_SNP [dm6]	C	T	4.399e^-4	0.894	INTRON Tusp & 1 other
X	17073448	X_17073448_SNP [dm3] X_17179415_SNP [dm6]	A	C	4.401e^-4	0.894	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13938786	2R_13938786_SNP [dm3] 2R_18051281_SNP [dm6]	G	T	4.401e^-4	0.894	SYNONYMOUS_CODING Muc55B
2R	13102217	2R_13102217_SNP [dm3] 2R_17214712_SNP [dm6]	A	G	4.409e^-4	0.894	INTERGENIC
2L	5406851	2L_5406851_SNP [dm3] 2L_5406851_SNP [dm6]	T	G	4.412e^-4	0.894	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18422694	2L_18422694_SNP [dm3] 2L_18422694_SNP [dm6]	T	C	4.419e^-4	0.894	INTERGENIC
X	5335700	X_5335700_SNP [dm3] X_5441667_SNP [dm6]	C	T	4.426e^-4	0.894	INTERGENIC
3R	24339586	3R_24339586_SNP [dm3] 3R_28513864_SNP [dm6]	C	A	4.440e^-4	0.894	INTRON Dhc98D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8078861	2R_8078861_SNP [dm3] 2R_12191356_SNP [dm6]	T	C	4.446e^-4	0.894	SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
3L	9392671	3L_9392671_INS [dm3] 3L_9399571_INS [dm6]	A	ATTCGGGCAC	4.449e^-4	0.894	UPSTREAM CG4080 DOWNSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12356382	3L_12356382_SNP [dm3] 3L_12363282_SNP [dm6]	G	A	4.453e^-4	0.894	INTERGENIC
3R	14523625	3R_14523625_SNP [dm3] 3R_18697903_SNP [dm6]	A	G	4.462e^-4	0.894	INTERGENIC
2L	5852948	2L_5852948_SNP [dm3] 2L_5852948_SNP [dm6]	T	C	4.463e^-4	0.894	INTRON TrissinR	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
2L	9318661	2L_9318661_SNP [dm3] 2L_9318661_SNP [dm6]	C	G	4.467e^-4	0.894	INTERGENIC
3L	11519521	3L_11519521_SNP [dm3] 3L_11526421_SNP [dm6]	T	C	4.470e^-4	0.894	INTRON Mob2
2L	2800569	2L_2800569_SNP [dm3] 2L_2800569_SNP [dm6]	A	T	4.477e^-4	0.894	UPSTREAM Syt1 INTERGENIC
2L	5916626	2L_5916626_SNP [dm3] 2L_5916626_SNP [dm6]	G	A	4.481e^-4	0.894	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_chinmo
3R	24251051	3R_24251051_SNP [dm3] 3R_28425329_SNP [dm6]	A	C	4.483e^-4	0.894	INTRON beat-VI
X	8668268	X_8668268_INS [dm3] X_8774235_INS [dm6]	A	ACCTTTGTAT	4.487e^-4	0.894	INTRON Lim1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13310936	2L_13310936_SNP [dm3] 2L_13310936_SNP [dm6]	T	A	4.496e^-4	0.894	INTRON CG43778
3R	24197989	3R_24197989_SNP [dm3] 3R_28372267_SNP [dm6]	C	T	4.498e^-4	0.894	INTERGENIC
2R	13978643	2R_13978643_SNP [dm3] 2R_18091138_SNP [dm6]	G	A	4.503e^-4	0.894	INTRON CG34386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb mE1_TFBS_HSA
X	19021619	X_19021619_SNP [dm3] X_19127586_SNP [dm6]	G	A	4.508e^-4	0.894	UPSTREAM tgy INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10557645	2R_10557645_SNP [dm3] 2R_14670140_SNP [dm6]	C	A	4.516e^-4	0.894	SYNONYMOUS_CODING CG12866 UTR_3_PRIME CG12866
2R	7452960	2R_7452960_SNP [dm3] 2R_11565455_SNP [dm6]	C	A	4.519e^-4	0.894	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18364065	X_18364065_DEL [dm3] X_18470032_DEL [dm6]	TTG	A	4.520e^-4	0.894	INTRON CG32547
2R	13548625	2R_13548625_SNP [dm3] 2R_17661120_SNP [dm6]	A	T	4.526e^-4	0.894	INTRON CCHa1-R
2L	16550918	2L_16550918_SNP [dm3] 2L_16550918_SNP [dm6]	A	G	4.530e^-4	0.894	UPSTREAM CG5968 INTRON CG42389
2L	1112930	2L_1112930_SNP [dm3] 2L_1112930_SNP [dm6]	G	A	4.537e^-4	0.894	UPSTREAM CG14340 DOWNSTREAM CG14339 INTERGENIC
X	18990767	X_18990767_SNP [dm3] X_19096734_SNP [dm6]	T	A	4.541e^-4	0.894	INTERGENIC
3R	24534523	3R_24534523_SNP [dm3] 3R_28708801_SNP [dm6]	A	G	4.543e^-4	0.894	NON_SYNONYMOUS_CODING htt	TF binding site mE1_TFBS_chinmo
2L	5406757	2L_5406757_SNP [dm3] 2L_5406757_SNP [dm6]	A	G	4.543e^-4	0.894	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3194957	X_3194957_SNP [dm3] X_3300924_SNP [dm6]	T	C	4.552e^-4	0.894	INTRON dnc
3R	23214746	3R_23214746_SNP [dm3] 3R_27389024_SNP [dm6]	T	C	4.552e^-4	0.894	INTRON side	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3468708	X_3468708_SNP [dm3] X_3574675_SNP [dm6]	A	C	4.562e^-4	0.894	UTR_5_PRIME AstA-R1	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	1789486	2R_1789486_SNP [dm3] 2R_5901981_SNP [dm6]	A	T	4.565e^-4	0.894	INTRON CG43366
2R	17325525	2R_17325525_SNP [dm3] 2R_21438020_SNP [dm6]	G	A	4.566e^-4	0.894	INTRON Sdc
3R	9163219	3R_9163219_SNP [dm3] 3R_13337497_SNP [dm6]	C	T	4.567e^-4	0.894	UPSTREAM PK2-R1 INTERGENIC
3R	19188718	3R_19188718_SNP [dm3] 3R_23362996_SNP [dm6]	C	T	4.569e^-4	0.894	SYNONYMOUS_CODING CG4408	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3416283	2R_3416283_SNP [dm3] 2R_7528778_SNP [dm6]	A	C	4.571e^-4	0.894	INTRON Drat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sbb
3R	9203094	3R_9203094_SNP [dm3] 3R_13377372_SNP [dm6]	G	C	4.571e^-4	0.894	INTRON CG9813 EXON CR44138
3R	24235331	3R_24235331_SNP [dm3] 3R_28409609_SNP [dm6]	T	C	4.572e^-4	0.894	INTERGENIC
2R	10852011	2R_10852011_SNP [dm3] 2R_14964506_SNP [dm6]	T	C	4.588e^-4	0.894	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9019797	3R_9019797_SNP [dm3] 3R_13194075_SNP [dm6]	A	G	4.591e^-4	0.894	INTERGENIC
3L	12343856	3L_12343856_DEL [dm3] 3L_12350756_DEL [dm6]	TGT	T	4.594e^-4	0.894	INTRON CrzR
2L	17714691	2L_17714691_SNP [dm3] 2L_17714691_SNP [dm6]	G	T	4.603e^-4	0.894	INTRON CadN
3R	9606749	3R_9606749_SNP [dm3] 3R_13781027_SNP [dm6]	A	G	4.612e^-4	0.894	UTR_5_PRIME CG9286 DOWNSTREAM CG9288 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4860478	2L_4860478_SNP [dm3] 2L_4860478_SNP [dm6]	G	A	4.613e^-4	0.894	INTRON pog
3R	15249539	3R_15249539_SNP [dm3] 3R_19423817_SNP [dm6]	A	T	4.618e^-4	0.894	UTR_3_PRIME CG3517 INTRON CG31221
X	4538367	X_4538367_SNP [dm3] X_4644334_SNP [dm6]	A	C	4.622e^-4	0.894	UPSTREAM CG3081 DOWNSTREAM HLH4C INTRON CG3062
2L	13310935	2L_13310935_SNP [dm3] 2L_13310935_SNP [dm6]	A	C	4.625e^-4	0.894	INTRON CG43778
3R	24234869	3R_24234869_SNP [dm3] 3R_28409147_SNP [dm6]	C	A	4.629e^-4	0.894	INTERGENIC
3R	24234870	3R_24234870_SNP [dm3] 3R_28409148_SNP [dm6]	A	C	4.629e^-4	0.894	INTERGENIC
3R	24234885	3R_24234885_SNP [dm3] 3R_28409163_SNP [dm6]	A	G	4.629e^-4	0.894	INTERGENIC
3L	12455160	3L_12455160_SNP [dm3] 3L_12462060_SNP [dm6]	C	G	4.637e^-4	0.894	DOWNSTREAM eyg INTERGENIC
3L	9765644	3L_9765644_SNP [dm3] 3L_9772544_SNP [dm6]	T	A	4.638e^-4	0.894	INTRON CG8177
3R	9691692	3R_9691692_INS [dm3] 3R_13865970_INS [dm6]	C	CCAGGAAC	4.638e^-4	0.894	INTERGENIC	TF binding site mE1_TFBS_Kr
X	16793076	X_16793076_DEL [dm3] X_16899043_DEL [dm6]	TATA	T	4.651e^-4	0.895	INTERGENIC
2L	8603454	2L_8603454_DEL [dm3] 2L_8603454_DEL [dm6]	CTTT	G	4.658e^-4	0.895	INTRON Sema-1a
3L	15998592	3L_15998592_SNP [dm3] 3L_16005492_SNP [dm6]	C	T	4.658e^-4	0.895	NON_SYNONYMOUS_CODING mRpS31 UPSTREAM CG5830	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	3354903	X_3354903_SNP [dm3] X_3460870_SNP [dm6]	T	C	4.672e^-4	0.895	SYNONYMOUS_CODING CG10801 UPSTREAM CG16782 INTRON CR44999
3R	24234785	3R_24234785_SNP [dm3] 3R_28409063_SNP [dm6]	G	A	4.679e^-4	0.895	INTERGENIC
3R	24273207	3R_24273207_SNP [dm3] 3R_28447485_SNP [dm6]	C	G	4.679e^-4	0.895	INTRON beat-VI
3R	24293335	3R_24293335_SNP [dm3] 3R_28467613_SNP [dm6]	G	A	4.679e^-4	0.895	INTRON beat-VI
2L	8603656	2L_8603656_SNP [dm3] 2L_8603656_SNP [dm6]	T	A	4.680e^-4	0.895	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi
2L	19412618	2L_19412618_SNP [dm3] 2L_19412618_SNP [dm6]	T	C	4.695e^-4	0.896	UPSTREAM Pax INTRON Pax
2L	6779868	2L_6779868_SNP [dm3] 2L_6779868_SNP [dm6]	A	G	4.699e^-4	0.896	SYNONYMOUS_CODING nrv1
X	13351845	X_13351845_SNP [dm3] X_13457812_SNP [dm6]	G	C	4.712e^-4	0.897	UPSTREAM CG34324 INTRON Neto
3R	8988994	3R_8988994_SNP [dm3] 3R_13163272_SNP [dm6]	G	C	4.712e^-4	0.897	NON_SYNONYMOUS_CODING timeout
3R	22898009	3R_22898009_SNP [dm3] 3R_27072287_SNP [dm6]	T	C	4.725e^-4	0.899	INTERGENIC
X	22187737	X_22187737_SNP [dm3] X_22785901_SNP [dm6]	T	A	4.731e^-4	0.899	INTRON CR44997
3L	19215884	3L_19215884_SNP [dm3] 3L_19222784_SNP [dm6]	C	G	4.737e^-4	0.899	INTRON fz2
2R	10051507	2R_10051507_SNP [dm3] 2R_14164002_SNP [dm6]	G	A	4.755e^-4	0.901	SYNONYMOUS_CODING Tango7 DOWNSTREAM O-fut1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2L	17050365	2L_17050365_SNP [dm3] 2L_17050365_SNP [dm6]	G	A	4.775e^-4	0.901	INTERGENIC
2L	9726390	2L_9726390_SNP [dm3] 2L_9726390_SNP [dm6]	C	A	4.776e^-4	0.901	INTRON Nckx30C
3R	26572902	3R_26572902_SNP [dm3] 3R_30747180_SNP [dm6]	G	T	4.777e^-4	0.901	UPSTREAM Npc2h & 1 other INTERGENIC
2L	14873127	2L_14873127_SNP [dm3] 2L_14873127_SNP [dm6]	A	G	4.778e^-4	0.901	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13216330	3L_13216330_SNP [dm3] 3L_13223230_SNP [dm6]	G	T	4.780e^-4	0.901	INTERGENIC
2L	11773588	2L_11773588_SNP [dm3] 2L_11773588_SNP [dm6]	T	A	4.782e^-4	0.901	INTERGENIC
3R	24624180	3R_24624180_SNP [dm3] 3R_28798458_SNP [dm6]	G	A	4.794e^-4	0.903	INTERGENIC
3R	27026403	3R_27026403_SNP [dm3] 3R_31200681_SNP [dm6]	A	T	4.804e^-4	0.904	INTRON CG1544	TF binding site mE1_TFBS_cad
3L	15904761	3L_15904761_SNP [dm3] 3L_15911661_SNP [dm6]	G	A	4.814e^-4	0.904	INTRON sff
3R	9028964	3R_9028964_SNP [dm3] 3R_13203242_SNP [dm6]	A	T	4.814e^-4	0.904	INTERGENIC
2R	10083496	2R_10083496_SNP [dm3] 2R_14195991_SNP [dm6]	A	G	4.828e^-4	0.904	SYNONYMOUS_CODING CG30069	TF binding site BDTNP1_TFBS_twi

By genomic position
Variant impact
Gene name

mn_Surv_Azinpho_1_0 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results