DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.187e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.09	0.0785
In_2R_NS	4.9683	0.0834

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1954 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	8089676	2R_8089676_SNP [dm3] 2R_12202171_SNP [dm6]	A	T	1.689e^-7	0.29	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8078685	2R_8078685_SNP [dm3] 2R_12191180_SNP [dm6]	G	A	3.090e^-7	0.29	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
2R	8091687	2R_8091687_SNP [dm3] 2R_12204182_SNP [dm6]	A	G	6.872e^-7	0.373	INTERGENIC
2R	8072884	2R_8072884_INS [dm3] 2R_12185379_INS [dm6]	G	GAGTTACGGGTGCCTCCGTT...	7.953e^-7	0.373	UTR_3_PRIME CG13175 & 1 other UPSTREAM Cyp6g1	regulatory region REDfly_CRMs
2R	8090560	2R_8090560_SNP [dm3] 2R_12203055_SNP [dm6]	A	T	1.324e^-6	0.434	INTERGENIC
2R	8091181	2R_8091181_SNP [dm3] 2R_12203676_SNP [dm6]	A	C	1.500e^-6	0.434	INTERGENIC
2R	8090564	2R_8090564_SNP [dm3] 2R_12203059_SNP [dm6]	G	A	1.619e^-6	0.434	INTERGENIC
2R	8078684	2R_8078684_SNP [dm3] 2R_12191179_SNP [dm6]	A	G	2.165e^-6	0.484	NON_SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
2R	8095372	2R_8095372_INS [dm3] 2R_12207867_INS [dm6]	T	TT	2.324e^-6	0.484	DOWNSTREAM CR45276 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	19132875	2R_19132875_SNP [dm3] 2R_23245352_SNP [dm6]	A	G	2.634e^-6	0.492	UTR_5_PRIME yip3
2R	8078974	2R_8078974_SNP [dm3] 2R_12191469_SNP [dm6]	G	C	2.896e^-6	0.492	NON_SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
2R	8100594	2R_8100594_SNP [dm3] 2R_12213089_SNP [dm6]	G	A	3.480e^-6	0.492	UPSTREAM Sr-CII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	15070156	2R_15070156_SNP [dm3] 2R_19182651_SNP [dm6]	C	G	3.500e^-6	0.492	INTRON hppy
2L	7752065	2L_7752065_INS [dm3] 2L_7752065_INS [dm6]	A	AGAA	3.818e^-6	0.492	DOWNSTREAM CG7203 INTERGENIC
2L	4417004	2L_4417004_SNP [dm3] 2L_4417004_SNP [dm6]	T	G	3.933e^-6	0.492	INTRON CG15431	TF binding site mE1_TFBS_chinmo
3L	4715162	3L_4715162_SNP [dm3] 3L_4715162_SNP [dm6]	C	T	5.556e^-6	0.613	INTRON RhoGEF64C
3L	4715229	3L_4715229_SNP [dm3] 3L_4715229_SNP [dm6]	A	T	5.902e^-6	0.613	INTRON RhoGEF64C
2R	8091180	2R_8091180_SNP [dm3] 2R_12203675_SNP [dm6]	C	A	6.436e^-6	0.613	INTERGENIC
2L	3974165	2L_3974165_SNP [dm3] 2L_3974165_SNP [dm6]	C	T	6.453e^-6	0.613	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8091158	2R_8091158_SNP [dm3] 2R_12203653_SNP [dm6]	G	C	6.540e^-6	0.613	INTERGENIC
3L	8248329	3L_8248329_SNP [dm3] 3L_8255229_SNP [dm6]	G	T	7.328e^-6	0.624	INTRON Dscam4
2L	7752047	2L_7752047_SNP [dm3] 2L_7752047_SNP [dm6]	C	A	7.634e^-6	0.624	DOWNSTREAM CG7203 INTERGENIC
2L	7752033	2L_7752033_SNP [dm3] 2L_7752033_SNP [dm6]	A	G	7.656e^-6	0.624	DOWNSTREAM CG7203 INTERGENIC
X	10565810	X_10565810_SNP [dm3] X_10671777_SNP [dm6]	G	A	8.693e^-6	0.641	DOWNSTREAM CG12637 INTRON X11Lbeta
3L	18691141	3L_18691141_SNP [dm3] 3L_18698041_SNP [dm6]	A	T	8.968e^-6	0.641	INTRON Dic4
2R	10850673	2R_10850673_SNP [dm3] 2R_14963168_SNP [dm6]	A	T	9.340e^-6	0.641	UPSTREAM ckn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	10851502	2R_10851502_SNP [dm3] 2R_14963997_SNP [dm6]	A	G	9.496e^-6	0.641	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11317609	3L_11317609_SNP [dm3] 3L_11324509_SNP [dm6]	G	A	9.566e^-6	0.641	UPSTREAM CR44721 DOWNSTREAM CR44722 EXON CR44723	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	9657929	X_9657929_SNP [dm3] X_9763896_SNP [dm6]	T	C	1.051e^-5	0.65	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	8098232	2R_8098232_SNP [dm3] 2R_12210727_SNP [dm6]	G	A	1.060e^-5	0.65	SYNONYMOUS_CODING Sr-CII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3329903	X_3329903_SNP [dm3] X_3435870_SNP [dm6]	G	T	1.075e^-5	0.65	UPSTREAM CG14269 INTRON CR44999 & 1 other
2R	8092269	2R_8092269_SNP [dm3] 2R_12204764_SNP [dm6]	T	A	1.152e^-5	0.667	INTERGENIC
X	944800	X_944800_SNP [dm3] X_1050767_SNP [dm6]	C	T	1.216e^-5	0.667	UPSTREAM CG14629 INTRON CR44779	TF binding site BDTNP1_TFBS_z
2R	19133250	2R_19133250_SNP [dm3] 2R_23245727_SNP [dm6]	A	T	1.324e^-5	0.667	UPSTREAM yip3 DOWNSTREAM RpL22-like INTERGENIC
2L	4339206	2L_4339206_SNP [dm3] 2L_4339206_SNP [dm6]	G	C	1.408e^-5	0.667	INTRON Atet	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	10125260	3L_10125260_SNP [dm3] 3L_10132160_SNP [dm6]	C	A	1.448e^-5	0.667	INTRON dpr6
2L	19062736	2L_19062736_SNP [dm3] 2L_19062736_SNP [dm6]	T	A	1.473e^-5	0.667	NON_SYNONYMOUS_CODING Phlpp UPSTREAM CG10495	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	15134617	2L_15134617_SNP [dm3] 2L_15134617_SNP [dm6]	G	T	1.485e^-5	0.667	INTERGENIC
2L	4279798	2L_4279798_SNP [dm3] 2L_4279798_SNP [dm6]	A	G	1.489e^-5	0.667	UPSTREAM Art2 INTRON Art2	TF binding site BDTNP1_TFBS_dl
3L	4715234	3L_4715234_SNP [dm3] 3L_4715234_SNP [dm6]	T	C	1.528e^-5	0.667	INTRON RhoGEF64C
3L	14367854	3L_14367854_SNP [dm3] 3L_14374754_SNP [dm6]	T	C	1.529e^-5	0.667	INTERGENIC
2L	4415907	2L_4415907_SNP [dm3] 2L_4415907_SNP [dm6]	C	T	1.541e^-5	0.667	INTRON CG15431
2R	8092306	2R_8092306_SNP [dm3] 2R_12204801_SNP [dm6]	C	T	1.561e^-5	0.667	INTERGENIC
2L	8229046	2L_8229046_SNP [dm3] 2L_8229046_SNP [dm6]	T	A	1.572e^-5	0.667	INTRON Pvr
2R	8100454	2R_8100454_SNP [dm3] 2R_12212949_SNP [dm6]	G	T	1.619e^-5	0.667	UPSTREAM Sr-CII INTERGENIC
2R	10925043	2R_10925043_SNP [dm3] 2R_15037538_SNP [dm6]	T	C	1.637e^-5	0.667	SYNONYMOUS_CODING hbs
2L	19062735	2L_19062735_SNP [dm3] 2L_19062735_SNP [dm6]	G	A	1.706e^-5	0.681	NON_SYNONYMOUS_CODING Phlpp UPSTREAM CG10495	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	14367875	3L_14367875_SNP [dm3] 3L_14374775_SNP [dm6]	A	C	1.792e^-5	0.7	INTERGENIC
3L	8225007	3L_8225007_SNP [dm3] 3L_8231907_SNP [dm6]	G	A	1.866e^-5	0.709	UTR_3_PRIME CG7213 DOWNSTREAM CR43953
3L	10613368	3L_10613368_SNP [dm3] 3L_10620268_SNP [dm6]	C	T	1.897e^-5	0.709	INTERGENIC
2L	7752063	2L_7752063_SNP [dm3] 2L_7752063_SNP [dm6]	A	G	1.944e^-5	0.709	DOWNSTREAM CG7203 INTERGENIC
3R	26575911	3R_26575911_DEL [dm3] 3R_30750189_DEL [dm6]	TCCTGTTT	T	1.967e^-5	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26581271	3R_26581271_SNP [dm3] 3R_30755549_SNP [dm6]	T	A	2.009e^-5	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10897475	3L_10897475_SNP [dm3] 3L_10904375_SNP [dm6]	G	A	2.054e^-5	0.713	INTERGENIC
3L	8248346	3L_8248346_SNP [dm3] 3L_8255246_SNP [dm6]	A	C	2.197e^-5	0.749	INTRON Dscam4
2L	7752077	2L_7752077_SNP [dm3] 2L_7752077_SNP [dm6]	A	T	2.264e^-5	0.756	DOWNSTREAM CG7203 INTERGENIC
2R	11518388	2R_11518388_SNP [dm3] 2R_15630883_SNP [dm6]	G	A	2.298e^-5	0.756	INTRON CG42524
3L	10780345	3L_10780345_SNP [dm3] 3L_10787245_SNP [dm6]	C	T	2.400e^-5	0.776	INTERGENIC
X	10477460	X_10477460_SNP [dm3] X_10583427_SNP [dm6]	C	A	2.572e^-5	0.811	INTRON spri	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5499967	2L_5499967_SNP [dm3] 2L_5499967_SNP [dm6]	G	A	2.597e^-5	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10851404	2R_10851404_SNP [dm3] 2R_14963899_SNP [dm6]	T	C	2.667e^-5	0.811	UTR_5_PRIME ckn UPSTREAM aPKC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	13697175	2L_13697175_SNP [dm3] 2L_13697175_SNP [dm6]	C	A	2.682e^-5	0.811	INTRON CG31814
2L	7752072	2L_7752072_SNP [dm3] 2L_7752072_SNP [dm6]	G	T	2.747e^-5	0.815	DOWNSTREAM CG7203 INTERGENIC
2R	10925067	2R_10925067_SNP [dm3] 2R_15037562_SNP [dm6]	A	C	2.783e^-5	0.815	SYNONYMOUS_CODING hbs
3R	18990840	3R_18990840_SNP [dm3] 3R_23165118_SNP [dm6]	A	G	2.874e^-5	0.829	INTERGENIC
2R	8090749	2R_8090749_SNP [dm3] 2R_12203244_SNP [dm6]	T	A	3.073e^-5	0.873	INTERGENIC
2R	10851929	2R_10851929_SNP [dm3] 2R_14964424_SNP [dm6]	T	G	3.135e^-5	0.877	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10925064	2R_10925064_SNP [dm3] 2R_15037559_SNP [dm6]	T	C	3.182e^-5	0.877	SYNONYMOUS_CODING hbs
2R	8070658	2R_8070658_SNP [dm3] 2R_12183153_SNP [dm6]	T	G	3.235e^-5	0.877	NON_SYNONYMOUS_CODING CG13175 UTR_5_PRIME CG33964 DOWNSTREAM wash & 1 other	TF binding site mE1_TFBS_sens
2R	10851839	2R_10851839_SNP [dm3] 2R_14964334_SNP [dm6]	T	A	3.311e^-5	0.877	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10850663	2R_10850663_SNP [dm3] 2R_14963158_SNP [dm6]	T	C	3.320e^-5	0.877	UPSTREAM ckn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	10477387	X_10477387_SNP [dm3] X_10583354_SNP [dm6]	C	G	3.462e^-5	0.893	INTRON spri	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10852296	2R_10852296_SNP [dm3] 2R_14964791_SNP [dm6]	T	C	3.498e^-5	0.893	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	8497621	2R_8497621_SNP [dm3] 2R_12610116_SNP [dm6]	C	T	3.580e^-5	0.893	INTRON Amph	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10851471	2R_10851471_SNP [dm3] 2R_14963966_SNP [dm6]	A	C	3.694e^-5	0.893	UPSTREAM aPKC INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10852011	2R_10852011_SNP [dm3] 2R_14964506_SNP [dm6]	T	C	3.762e^-5	0.893	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19197363	2R_19197363_SNP [dm3] 2R_23309840_SNP [dm6]	C	A	3.827e^-5	0.893	UPSTREAM Prosbeta5R1 INTERGENIC
3L	14367753	3L_14367753_SNP [dm3] 3L_14374653_SNP [dm6]	A	G	3.827e^-5	0.893	INTERGENIC
2R	12186362	2R_12186362_SNP [dm3] 2R_16298857_SNP [dm6]	C	T	3.926e^-5	0.893	UTR_5_PRIME CG43265
X	8093828	X_8093828_SNP [dm3] X_8199795_SNP [dm6]	A	G	4.101e^-5	0.893	INTRON sdt
2L	3770009	2L_3770009_SNP [dm3] 2L_3770009_SNP [dm6]	C	T	4.239e^-5	0.893	DOWNSTREAM CG43707 EXON CR43704	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2682430	X_2682430_INS [dm3] X_2788397_INS [dm6]	A	ATA	4.260e^-5	0.893	INTRON kirre & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3869340	2L_3869340_SNP [dm3] 2L_3869340_SNP [dm6]	C	T	4.262e^-5	0.893	SYNONYMOUS_CODING Cep97 UPSTREAM Cep97
X	2291813	X_2291813_SNP [dm3] X_2397780_SNP [dm6]	T	C	4.287e^-5	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr mE1_TFBS_sens
2R	10851680	2R_10851680_SNP [dm3] 2R_14964175_SNP [dm6]	G	A	4.299e^-5	0.893	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	955429	2L_955429_INS [dm3] 2L_955429_INS [dm6]	G	GCTTG	4.334e^-5	0.893	INTRON CG4341
3L	5518333	3L_5518333_SNP [dm3] 3L_5525233_SNP [dm6]	G	T	4.345e^-5	0.893	INTRON Lkr
X	9432629	X_9432629_SNP [dm3] X_9538596_SNP [dm6]	T	A	4.384e^-5	0.893	INTRON CG32700
2R	8061931	2R_8061931_SNP [dm3] 2R_12174426_SNP [dm6]	C	A	4.581e^-5	0.893	UPSTREAM Cct5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26119050	3R_26119050_SNP [dm3] 3R_30293328_SNP [dm6]	T	G	4.588e^-5	0.893	INTRON hdc
2L	8230692	2L_8230692_SNP [dm3] 2L_8230692_SNP [dm6]	T	G	4.719e^-5	0.893	UPSTREAM Pvr INTRON Pvr
2R	7967256	2R_7967256_SNP [dm3] 2R_12079751_SNP [dm6]	G	A	4.790e^-5	0.893	UPSTREAM CG8888 INTERGENIC	TF binding site mE1_TFBS_inv
3L	14367878	3L_14367878_SNP [dm3] 3L_14374778_SNP [dm6]	A	C	4.808e^-5	0.893	INTERGENIC
3R	19923890	3R_19923890_SNP [dm3] 3R_24098168_SNP [dm6]	T	C	4.816e^-5	0.893	INTRON 4EHP
3L	14367882	3L_14367882_INS [dm3] 3L_14374782_INS [dm6]	C	CC	4.823e^-5	0.893	INTERGENIC
2L	7240000	2L_7240000_SNP [dm3] 2L_7240000_SNP [dm6]	T	C	4.886e^-5	0.893	INTRON Ndae1
2L	19087980	2L_19087980_SNP [dm3] 2L_19087980_SNP [dm6]	T	C	4.953e^-5	0.893	INTRON Lim3
2R	9511846	2R_9511846_INS [dm3] 2R_13624341_INS [dm6]	A	ACCTAGATATGAAAA...	5.015e^-5	0.893	INTRON fas	TF binding site mE1_TFBS_HSA
X	13372549	X_13372549_SNP [dm3] X_13478516_SNP [dm6]	G	A	5.134e^-5	0.893	INTRON Neto
2L	8229054	2L_8229054_SNP [dm3] 2L_8229054_SNP [dm6]	A	G	5.221e^-5	0.893	INTRON Pvr
2L	6599254	2L_6599254_SNP [dm3] 2L_6599254_SNP [dm6]	G	A	5.238e^-5	0.893	INTRON CG11319
2R	7842807	2R_7842807_SNP [dm3] 2R_11955302_SNP [dm6]	G	A	5.275e^-5	0.893	INTRON CG13188
X	8093800	X_8093800_SNP [dm3] X_8199767_SNP [dm6]	T	C	5.277e^-5	0.893	INTRON sdt
3L	14367731	3L_14367731_SNP [dm3] 3L_14374631_SNP [dm6]	G	C	5.398e^-5	0.893	INTERGENIC
3R	14739407	3R_14739407_SNP [dm3] 3R_18913685_SNP [dm6]	G	A	5.533e^-5	0.893	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	17140573	2R_17140573_INS [dm3] 2R_21253068_INS [dm6]	A	AA	5.537e^-5	0.893	INTERGENIC
2R	16079729	2R_16079729_SNP [dm3] 2R_20192224_SNP [dm6]	A	G	5.653e^-5	0.893	INTERGENIC
2L	19059036	2L_19059036_SNP [dm3] 2L_19059036_SNP [dm6]	T	A	5.662e^-5	0.893	UPSTREAM Phlpp DOWNSTREAM CG10492 INTERGENIC
2L	19059143	2L_19059143_SNP [dm3] 2L_19059143_SNP [dm6]	T	A	5.662e^-5	0.893	UTR_5_PRIME Phlpp UPSTREAM Phlpp DOWNSTREAM CG10492
2R	12186669	2R_12186669_SNP [dm3] 2R_16299164_SNP [dm6]	G	T	5.713e^-5	0.893	UPSTREAM CG43265 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15134595	2L_15134595_SNP [dm3] 2L_15134595_SNP [dm6]	T	C	5.724e^-5	0.893	INTERGENIC
3R	26581259	3R_26581259_SNP [dm3] 3R_30755537_SNP [dm6]	G	A	5.819e^-5	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8093914	2R_8093914_SNP [dm3] 2R_12206409_SNP [dm6]	G	C	5.831e^-5	0.893	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	15234507	X_15234507_SNP [dm3] X_15340474_SNP [dm6]	T	C	5.833e^-5	0.893	UTR_3_PRIME CG9123 DOWNSTREAM HDAC6
3R	26578440	3R_26578440_SNP [dm3] 3R_30752718_SNP [dm6]	G	A	5.887e^-5	0.893	INTERGENIC
2R	20363105	2R_20363105_SNP [dm3] 2R_24475582_SNP [dm6]	C	T	5.946e^-5	0.893	DOWNSTREAM CG3494 INTRON CG13579 & 1 other
2R	8090624	2R_8090624_SNP [dm3] 2R_12203119_SNP [dm6]	G	A	6.040e^-5	0.893	INTERGENIC
3R	21098076	3R_21098076_SNP [dm3] 3R_25272354_SNP [dm6]	T	G	6.059e^-5	0.893	NON_SYNONYMOUS_CODING CG11891 UTR_3_PRIME CG11889 DOWNSTREAM CG11889	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7121093	3L_7121093_SNP [dm3] 3L_7127993_SNP [dm6]	A	G	6.107e^-5	0.893	SYNONYMOUS_CODING CG8629 UTR_3_PRIME BBS1 UPSTREAM CG15829
3R	21417306	3R_21417306_SNP [dm3] 3R_25591584_SNP [dm6]	A	G	6.127e^-5	0.893	UTR_3_PRIME ymp INTRON msi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	21417321	3R_21417321_SNP [dm3] 3R_25591599_SNP [dm6]	T	A	6.128e^-5	0.893	UTR_3_PRIME ymp INTRON msi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	4478064	2R_4478064_SNP [dm3] 2R_8590559_SNP [dm6]	G	C	6.136e^-5	0.893	UTR_5_PRIME CG14752	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10896492	2R_10896492_SNP [dm3] 2R_15008987_SNP [dm6]	A	G	6.145e^-5	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26573536	3R_26573536_SNP [dm3] 3R_30747814_SNP [dm6]	C	T	6.170e^-5	0.893	UPSTREAM CR43238 INTERGENIC
3R	26572910	3R_26572910_SNP [dm3] 3R_30747188_SNP [dm6]	A	G	6.183e^-5	0.893	UPSTREAM Npc2h & 1 other INTERGENIC
2R	17676886	2R_17676886_SNP [dm3] 2R_21789381_SNP [dm6]	A	C	6.281e^-5	0.893	DOWNSTREAM lox2 INTERGENIC
2L	19075382	2L_19075382_DEL [dm3] 2L_19075382_DEL [dm6]	GGTT	C	6.318e^-5	0.893	EXON CR33315	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10851887	2R_10851887_SNP [dm3] 2R_14964382_SNP [dm6]	T	C	6.341e^-5	0.893	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26562517	3R_26562517_SNP [dm3] 3R_30736795_SNP [dm6]	C	A	6.447e^-5	0.893	INTERGENIC
X	14341520	X_14341520_DEL [dm3] X_14447487_DEL [dm6]	AA	A	6.466e^-5	0.893	INTRON dpr8
3R	26573006	3R_26573006_SNP [dm3] 3R_30747284_SNP [dm6]	C	A	6.526e^-5	0.893	UPSTREAM Npc2h & 1 other INTERGENIC
2L	8196367	2L_8196367_SNP [dm3] 2L_8196367_SNP [dm6]	G	A	6.566e^-5	0.893	SYNONYMOUS_CODING CG8475 UPSTREAM CG8460 EXON CR44116	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	26573319	3R_26573319_DEL [dm3] 3R_30747597_DEL [dm6]	CCCCTTTCCCCTGGCGAATG...	C	6.583e^-5	0.893	UPSTREAM CR43238 INTERGENIC
3L	2254707	3L_2254707_SNP [dm3] 3L_2254707_SNP [dm6]	T	C	6.592e^-5	0.893	INTRON CG1275	TF binding site mE1_TFBS_cad
2L	19061559	2L_19061559_SNP [dm3] 2L_19061559_SNP [dm6]	G	A	6.722e^-5	0.893	NON_SYNONYMOUS_CODING Phlpp	TF binding site mE1_TFBS_chinmo
2L	15142412	2L_15142412_SNP [dm3] 2L_15142412_SNP [dm6]	G	A	6.738e^-5	0.893	INTERGENIC
2R	12667214	2R_12667214_SNP [dm3] 2R_16779709_SNP [dm6]	C	T	6.842e^-5	0.893	UPSTREAM resilin DOWNSTREAM Vkor INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	2254766	3L_2254766_SNP [dm3] 3L_2254766_SNP [dm6]	A	G	6.867e^-5	0.893	INTRON CG1275	TF binding site mE1_TFBS_cad
2R	17326783	2R_17326783_SNP [dm3] 2R_21439278_SNP [dm6]	C	A	6.872e^-5	0.893	INTRON Sdc
2R	10851473	2R_10851473_DEL [dm3] 2R_14963968_DEL [dm6]	TGGGTCTTGGTGT...	ACCCA	6.897e^-5	0.893	UPSTREAM aPKC INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10850586	2R_10850586_SNP [dm3] 2R_14963081_SNP [dm6]	T	G	6.911e^-5	0.893	UPSTREAM ckn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	8090744	2R_8090744_SNP [dm3] 2R_12203239_SNP [dm6]	A	G	6.917e^-5	0.893	INTERGENIC
X	19911965	X_19911965_SNP [dm3] X_20017932_SNP [dm6]	T	C	6.946e^-5	0.893	INTRON Dop2R
3R	25519039	3R_25519039_DEL [dm3] 3R_29693317_DEL [dm6]	AAAAC	A	7.010e^-5	0.893	INTRON dmrt99B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20363103	2R_20363103_SNP [dm3] 2R_24475580_SNP [dm6]	C	T	7.056e^-5	0.893	DOWNSTREAM CG3494 INTRON CG13579 & 1 other
3R	18420153	3R_18420153_SNP [dm3] 3R_22594431_SNP [dm6]	G	T	7.084e^-5	0.893	INTRON Efa6
3L	2254777	3L_2254777_INS [dm3] 3L_2254777_INS [dm6]	A	AT	7.116e^-5	0.893	INTRON CG1275	TF binding site mE1_TFBS_cad
2L	19059053	2L_19059053_INS [dm3] 2L_19059053_INS [dm6]	A	ATGATCCA	7.154e^-5	0.893	UPSTREAM Phlpp DOWNSTREAM CG10492 INTERGENIC
3L	14367859	3L_14367859_SNP [dm3] 3L_14374759_SNP [dm6]	C	T	7.182e^-5	0.893	INTERGENIC
2R	8090760	2R_8090760_SNP [dm3] 2R_12203255_SNP [dm6]	C	T	7.236e^-5	0.893	INTERGENIC
3R	12758829	3R_12758829_SNP [dm3] 3R_16933107_SNP [dm6]	G	A	7.293e^-5	0.893	UTR_5_PRIME Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8090739	2R_8090739_SNP [dm3] 2R_12203234_SNP [dm6]	G	A	7.319e^-5	0.893	INTERGENIC
2R	8077706	2R_8077706_SNP [dm3] 2R_12190201_SNP [dm6]	G	T	7.353e^-5	0.893	SYNONYMOUS_CODING Cyp6g2 UPSTREAM Cyp6t3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2225526	X_2225526_SNP [dm3] X_2331493_SNP [dm6]	C	A	7.396e^-5	0.893	UTR_3_PRIME Ilp6 DOWNSTREAM CR33218 INTRON phl
2L	8820348	2L_8820348_SNP [dm3] 2L_8820348_SNP [dm6]	T	C	7.439e^-5	0.893	INTERGENIC
2R	11522894	2R_11522894_SNP [dm3] 2R_15635389_SNP [dm6]	G	A	7.453e^-5	0.893	INTRON CG42524
2R	16501551	2R_16501551_SNP [dm3] 2R_20614046_SNP [dm6]	A	G	7.473e^-5	0.893	INTRON Hil	TF binding site BDTNP1_TFBS_dl
2R	13833195	2R_13833195_SNP [dm3] 2R_17945690_SNP [dm6]	A	G	7.611e^-5	0.896	INTERGENIC
2L	3769986	2L_3769986_SNP [dm3] 2L_3769986_SNP [dm6]	T	C	7.635e^-5	0.896	DOWNSTREAM CG43707 EXON CR43704	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1516943	2L_1516943_SNP [dm3] 2L_1516943_SNP [dm6]	T	C	7.689e^-5	0.896	NON_SYNONYMOUS_CODING CG18132 DOWNSTREAM halo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	7185649	2L_7185649_SNP [dm3] 2L_7185649_SNP [dm6]	A	G	7.717e^-5	0.896	UTR_3_PRIME CG4496 DOWNSTREAM CG4495
3R	2991929	3R_2991929_SNP [dm3] 3R_7166207_SNP [dm6]	C	T	7.736e^-5	0.896	INTRON sas
2R	8101160	2R_8101160_SNP [dm3] 2R_12213655_SNP [dm6]	G	T	7.858e^-5	0.9	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	1578150	3L_1578150_SNP [dm3] 3L_1578150_SNP [dm6]	C	A	7.902e^-5	0.9	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	9819693	2R_9819693_SNP [dm3] 2R_13932188_SNP [dm6]	T	G	7.918e^-5	0.9	INTRON shot	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	13198270	X_13198270_SNP [dm3] X_13304237_SNP [dm6]	T	G	8.303e^-5	0.918	UPSTREAM CR45018 INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19193211	3R_19193211_DEL [dm3] 3R_23367489_DEL [dm6]	GGCACGTTG	G	8.304e^-5	0.918	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5641861	2L_5641861_SNP [dm3] 2L_5641861_SNP [dm6]	A	G	8.307e^-5	0.918	SYNONYMOUS_CODING CG31646 UPSTREAM mir-963 & 1 other DOWNSTREAM mir-959 & 3 others
3L	17185700	3L_17185700_SNP [dm3] 3L_17192600_SNP [dm6]	C	T	8.324e^-5	0.918	INTRON Rbp6
2R	8090765	2R_8090765_SNP [dm3] 2R_12203260_SNP [dm6]	C	T	8.394e^-5	0.918	INTERGENIC
3R	18420156	3R_18420156_SNP [dm3] 3R_22594434_SNP [dm6]	T	G	8.426e^-5	0.918	INTRON Efa6
2L	4222393	2L_4222393_SNP [dm3] 2L_4222393_SNP [dm6]	A	T	8.476e^-5	0.918	UPSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	10851886	2R_10851886_SNP [dm3] 2R_14964381_SNP [dm6]	G	T	8.509e^-5	0.918	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19059121	2L_19059121_SNP [dm3] 2L_19059121_SNP [dm6]	T	G	8.546e^-5	0.918	UPSTREAM Phlpp DOWNSTREAM CG10492 INTERGENIC
2R	15798110	2R_15798110_SNP [dm3] 2R_19910605_SNP [dm6]	G	T	8.588e^-5	0.918	EXON CR44573
X	14540448	X_14540448_SNP [dm3] X_14646415_SNP [dm6]	G	A	8.615e^-5	0.918	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22883969	3R_22883969_SNP [dm3] 3R_27058247_SNP [dm6]	G	T	8.726e^-5	0.923	SYNONYMOUS_CODING Nep5 UTR_3_PRIME Nep5 DOWNSTREAM RYa-R
2R	17139006	2R_17139006_SNP [dm3] 2R_21251501_SNP [dm6]	C	G	8.760e^-5	0.923	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	19059058	2L_19059058_INS [dm3] 2L_19059058_INS [dm6]	A	ATGATTACAAATGA...	8.953e^-5	0.931	UPSTREAM Phlpp DOWNSTREAM CG10492 INTERGENIC
2R	8090555	2R_8090555_DEL [dm3] 2R_12203050_DEL [dm6]	AAAA	A	8.972e^-5	0.931	INTERGENIC
2R	8091164	2R_8091164_SNP [dm3] 2R_12203659_SNP [dm6]	G	A	9.011e^-5	0.931	INTERGENIC
3L	2254754	3L_2254754_SNP [dm3] 3L_2254754_SNP [dm6]	T	G	9.202e^-5	0.931	INTRON CG1275	TF binding site mE1_TFBS_cad
2L	15134605	2L_15134605_SNP [dm3] 2L_15134605_SNP [dm6]	A	G	9.426e^-5	0.931	INTERGENIC
3L	11518974	3L_11518974_SNP [dm3] 3L_11525874_SNP [dm6]	G	A	9.477e^-5	0.931	INTRON Mob2
2R	8101879	2R_8101879_SNP [dm3] 2R_12214374_SNP [dm6]	G	A	9.513e^-5	0.931	UTR_3_PRIME CG13171
X	14577707	X_14577707_SNP [dm3] X_14683674_SNP [dm6]	C	T	9.569e^-5	0.931	INTERGENIC
3R	26572902	3R_26572902_SNP [dm3] 3R_30747180_SNP [dm6]	G	T	9.767e^-5	0.931	UPSTREAM Npc2h & 1 other INTERGENIC
2L	3756191	2L_3756191_SNP [dm3] 2L_3756191_SNP [dm6]	C	T	9.847e^-5	0.931	INTERGENIC
2L	15134330	2L_15134330_SNP [dm3] 2L_15134330_SNP [dm6]	C	G	9.922e^-5	0.931	INTERGENIC
2L	14575392	2L_14575392_SNP [dm3] 2L_14575392_SNP [dm6]	G	A	1.001e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	17200902	3L_17200902_SNP [dm3] 3L_17207802_SNP [dm6]	G	T	1.012e^-4	0.931	INTRON Rbp6
2L	7996772	2L_7996772_SNP [dm3] 2L_7996772_SNP [dm6]	T	A	1.014e^-4	0.931	UTR_5_PRIME CG7227 DOWNSTREAM CR44996
2R	8078861	2R_8078861_SNP [dm3] 2R_12191356_SNP [dm6]	T	C	1.016e^-4	0.931	SYNONYMOUS_CODING Cyp6t3 UPSTREAM Cyp6g2
2R	7966916	2R_7966916_SNP [dm3] 2R_12079411_SNP [dm6]	C	G	1.026e^-4	0.931	UTR_5_PRIME CG8888
2L	3052610	2L_3052610_SNP [dm3] 2L_3052610_SNP [dm6]	A	G	1.034e^-4	0.931	SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_chinmo
X	3791539	X_3791539_SNP [dm3] X_3897506_SNP [dm6]	G	T	1.037e^-4	0.931	INTRON CG42541
3L	8224748	3L_8224748_SNP [dm3] 3L_8231648_SNP [dm6]	A	G	1.047e^-4	0.931	DOWNSTREAM CG7213 EXON CR43953
2R	17139027	2R_17139027_SNP [dm3] 2R_21251522_SNP [dm6]	G	T	1.047e^-4	0.931	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	25519022	3R_25519022_SNP [dm3] 3R_29693300_SNP [dm6]	T	A	1.047e^-4	0.931	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15134599	2L_15134599_DEL [dm3] 2L_15134599_DEL [dm6]	TA	T	1.053e^-4	0.931	INTERGENIC
2R	20159760	2R_20159760_SNP [dm3] 2R_24272237_SNP [dm6]	A	T	1.054e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8820353	2L_8820353_SNP [dm3] 2L_8820353_SNP [dm6]	G	A	1.056e^-4	0.931	INTERGENIC
2L	16391069	2L_16391069_SNP [dm3] 2L_16391069_SNP [dm6]	A	G	1.057e^-4	0.931	INTERGENIC
2L	3949443	2L_3949443_SNP [dm3] 2L_3949443_SNP [dm6]	C	T	1.074e^-4	0.931	INTRON fred
2R	8111212	2R_8111212_SNP [dm3] 2R_12223707_SNP [dm6]	A	C	1.081e^-4	0.931	DOWNSTREAM CG8854 INTERGENIC
2L	15140634	2L_15140634_SNP [dm3] 2L_15140634_SNP [dm6]	T	A	1.093e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	4472565	2R_4472565_SNP [dm3] 2R_8585060_SNP [dm6]	T	C	1.095e^-4	0.931	UPSTREAM CG42326 INTERGENIC
2L	3944237	2L_3944237_SNP [dm3] 2L_3944237_SNP [dm6]	G	T	1.098e^-4	0.931	INTRON fred
3R	21098148	3R_21098148_SNP [dm3] 3R_25272426_SNP [dm6]	C	T	1.106e^-4	0.931	NON_SYNONYMOUS_CODING CG11891 UTR_3_PRIME CG11889 DOWNSTREAM CG11889	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8093885	2R_8093885_SNP [dm3] 2R_12206380_SNP [dm6]	T	G	1.115e^-4	0.931	EXON CR45276	TF binding site mE1_TFBS_cad
2L	6298643	2L_6298643_SNP [dm3] 2L_6298643_SNP [dm6]	A	G	1.118e^-4	0.931	INTRON Ddr
2L	13703158	2L_13703158_SNP [dm3] 2L_13703158_SNP [dm6]	A	G	1.119e^-4	0.931	INTRON CG31814
2R	17139003	2R_17139003_SNP [dm3] 2R_21251498_SNP [dm6]	G	T	1.120e^-4	0.931	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	9186941	3R_9186941_SNP [dm3] 3R_13361219_SNP [dm6]	A	C	1.133e^-4	0.931	DOWNSTREAM poly INTERGENIC
2L	13697581	2L_13697581_SNP [dm3] 2L_13697581_SNP [dm6]	G	A	1.140e^-4	0.931	INTRON CG31814
2R	1720046	2R_1720046_SNP [dm3] 2R_5832541_SNP [dm6]	T	G	1.141e^-4	0.931	INTRON dpr12
2R	17323545	2R_17323545_SNP [dm3] 2R_21436040_SNP [dm6]	C	T	1.159e^-4	0.931	INTRON Sdc
2L	14575412	2L_14575412_SNP [dm3] 2L_14575412_SNP [dm6]	G	T	1.161e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	21100004	3R_21100004_SNP [dm3] 3R_25274282_SNP [dm6]	A	G	1.182e^-4	0.931	SYNONYMOUS_CODING CG11878	TF binding site mE1_TFBS_HSA
3R	26573519	3R_26573519_SNP [dm3] 3R_30747797_SNP [dm6]	G	A	1.186e^-4	0.931	UPSTREAM CR43238 INTERGENIC
3R	26573520	3R_26573520_SNP [dm3] 3R_30747798_SNP [dm6]	G	A	1.186e^-4	0.931	UPSTREAM CR43238 INTERGENIC
2L	15142387	2L_15142387_SNP [dm3] 2L_15142387_SNP [dm6]	C	A	1.191e^-4	0.931	INTERGENIC	insulator Insulator_Class_II.mE01
2L	13686728	2L_13686728_SNP [dm3] 2L_13686728_SNP [dm6]	C	T	1.193e^-4	0.931	INTRON CG31814
2R	10719022	2R_10719022_SNP [dm3] 2R_14831517_SNP [dm6]	A	G	1.198e^-4	0.931	INTERGENIC
3R	24552825	3R_24552825_SNP [dm3] 3R_28727103_SNP [dm6]	C	T	1.225e^-4	0.931	INTRON htt	TF binding site mE1_TFBS_chinmo
X	5220587	X_5220587_SNP [dm3] X_5326554_SNP [dm6]	T	C	1.233e^-4	0.931	SYNONYMOUS_CODING Mcm3 DOWNSTREAM CG3309	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	7750036	2L_7750036_SNP [dm3] 2L_7750036_SNP [dm6]	T	C	1.240e^-4	0.931	INTERGENIC
3L	12712120	3L_12712120_SNP [dm3] 3L_12719020_SNP [dm6]	T	G	1.247e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_Kr
3R	25518972	3R_25518972_SNP [dm3] 3R_29693250_SNP [dm6]	A	G	1.247e^-4	0.931	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17050365	2L_17050365_SNP [dm3] 2L_17050365_SNP [dm6]	G	A	1.249e^-4	0.931	INTERGENIC
2L	15140611	2L_15140611_SNP [dm3] 2L_15140611_SNP [dm6]	C	T	1.250e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	10004448	3R_10004448_SNP [dm3] 3R_14178726_SNP [dm6]	G	C	1.256e^-4	0.931	INTRON Dop1R1
3R	21101029	3R_21101029_SNP [dm3] 3R_25275307_SNP [dm6]	C	T	1.261e^-4	0.931	DOWNSTREAM CG10513 & 1 other INTERGENIC
2R	8093965	2R_8093965_SNP [dm3] 2R_12206460_SNP [dm6]	G	C	1.262e^-4	0.931	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5406744	2L_5406744_SNP [dm3] 2L_5406744_SNP [dm6]	A	T	1.262e^-4	0.931	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8105220	2R_8105220_SNP [dm3] 2R_12217715_SNP [dm6]	G	A	1.265e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2254783	3L_2254783_INS [dm3] 3L_2254783_INS [dm6]	A	AAGCCTCTGACTTCTGGCC...	1.266e^-4	0.931	INTRON CG1275	TF binding site mE1_TFBS_cad
3R	21123571	3R_21123571_SNP [dm3] 3R_25297849_SNP [dm6]	T	G	1.274e^-4	0.931	UPSTREAM CG31097 DOWNSTREAM CG31288 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7996798	2L_7996798_SNP [dm3] 2L_7996798_SNP [dm6]	A	G	1.284e^-4	0.931	UTR_5_PRIME CG7227 DOWNSTREAM CR44996
X	10565697	X_10565697_SNP [dm3] X_10671664_SNP [dm6]	A	G	1.286e^-4	0.931	DOWNSTREAM CG12637 INTRON X11Lbeta
2R	8059576	2R_8059576_SNP [dm3] 2R_12172071_SNP [dm6]	C	T	1.290e^-4	0.931	UPSTREAM Oda INTRON Oda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_zfh1
2L	6215923	2L_6215923_SNP [dm3] 2L_6215923_SNP [dm6]	T	C	1.290e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20848029	3L_20848029_SNP [dm3] 3L_20854929_SNP [dm6]	G	T	1.294e^-4	0.931	SPLICE_SITE_REGION CG32432 INTRON CG32432	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10234362	2L_10234362_SNP [dm3] 2L_10234362_SNP [dm6]	G	A	1.295e^-4	0.931	UTR_3_PRIME eEF1delta DOWNSTREAM mthl15
3R	11022319	3R_11022319_SNP [dm3] 3R_15196597_SNP [dm6]	G	A	1.296e^-4	0.931	UPSTREAM CG42542 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_Ubx
3L	12111832	3L_12111832_SNP [dm3] 3L_12118732_SNP [dm6]	C	G	1.304e^-4	0.931	SYNONYMOUS_CODING ssp DOWNSTREAM l_3_j2D3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7750073	2L_7750073_SNP [dm3] 2L_7750073_SNP [dm6]	A	G	1.334e^-4	0.931	INTERGENIC
3L	10159081	3L_10159081_SNP [dm3] 3L_10165981_SNP [dm6]	C	T	1.346e^-4	0.931	UTR_3_PRIME CG6628 INTRON dpr10
2R	2465802	2R_2465802_SNP [dm3] 2R_6578297_SNP [dm6]	G	T	1.349e^-4	0.931	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8222530	2L_8222530_SNP [dm3] 2L_8222530_SNP [dm6]	A	G	1.349e^-4	0.931	INTRON Pvr
2R	10016547	2R_10016547_SNP [dm3] 2R_14129042_SNP [dm6]	A	G	1.358e^-4	0.931	INTRON Prosap
2R	4479585	2R_4479585_SNP [dm3] 2R_8592080_SNP [dm6]	A	G	1.361e^-4	0.931	UPSTREAM CG43183 DOWNSTREAM CG14752 INTERGENIC
X	18431898	X_18431898_DEL [dm3] X_18537865_DEL [dm6]	GCGGACCCCG	G	1.368e^-4	0.931	INTRON Bx
3R	21072818	3R_21072818_SNP [dm3] 3R_25247096_SNP [dm6]	A	T	1.370e^-4	0.931	UPSTREAM Nup37 INTRON RpS27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
3L	17185719	3L_17185719_DEL [dm3] 3L_17192619_DEL [dm6]	TA	T	1.370e^-4	0.931	INTRON Rbp6
2R	12667258	2R_12667258_SNP [dm3] 2R_16779753_SNP [dm6]	G	T	1.378e^-4	0.931	UPSTREAM resilin DOWNSTREAM Vkor INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	17139008	2R_17139008_DEL [dm3] 2R_21251503_DEL [dm6]	AGACATGA	A	1.383e^-4	0.931	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	17139039	2R_17139039_DEL [dm3] 2R_21251534_DEL [dm6]	TT	T	1.383e^-4	0.931	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	11853481	3L_11853481_SNP [dm3] 3L_11860381_SNP [dm6]	G	A	1.385e^-4	0.931	INTRON CG44837
2R	11466931	2R_11466931_SNP [dm3] 2R_15579426_SNP [dm6]	G	A	1.391e^-4	0.931	INTERGENIC
X	8093857	X_8093857_SNP [dm3] X_8199824_SNP [dm6]	G	A	1.399e^-4	0.931	INTRON sdt
X	10880331	X_10880331_SNP [dm3] X_10986298_SNP [dm6]	C	T	1.399e^-4	0.931	INTRON CG42339
3R	18987826	3R_18987826_SNP [dm3] 3R_23162104_SNP [dm6]	A	C	1.402e^-4	0.931	UPSTREAM CG13829 INTERGENIC
2R	10862895	2R_10862895_SNP [dm3] 2R_14975390_SNP [dm6]	G	C	1.406e^-4	0.931	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10862897	2R_10862897_DEL [dm3] 2R_14975392_DEL [dm6]	TTAAT	T	1.406e^-4	0.931	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2254782	3L_2254782_SNP [dm3] 3L_2254782_SNP [dm6]	T	A	1.411e^-4	0.931	INTRON CG1275	TF binding site mE1_TFBS_cad
2R	20172842	2R_20172842_SNP [dm3] 2R_24285319_SNP [dm6]	T	A	1.418e^-4	0.931	INTRON nvy
X	18180216	X_18180216_SNP [dm3] X_18286183_SNP [dm6]	G	C	1.418e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14373729	3L_14373729_DEL [dm3] 3L_14380629_DEL [dm6]	GG	G	1.419e^-4	0.931	INTERGENIC
3L	11633538	3L_11633538_SNP [dm3] 3L_11640438_SNP [dm6]	A	T	1.420e^-4	0.931	INTRON CG32091
2R	8092572	2R_8092572_SNP [dm3] 2R_12205067_SNP [dm6]	C	T	1.423e^-4	0.931	INTERGENIC
3L	15538321	3L_15538321_SNP [dm3] 3L_15545221_SNP [dm6]	T	C	1.428e^-4	0.931	INTRON CrebA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11265258	3R_11265258_SNP [dm3] 3R_15439536_SNP [dm6]	T	A	1.428e^-4	0.931	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
3R	10495935	3R_10495935_SNP [dm3] 3R_14670213_SNP [dm6]	T	G	1.431e^-4	0.931	SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12876640	3R_12876640_SNP [dm3] 3R_17050918_SNP [dm6]	G	A	1.454e^-4	0.931	INTERGENIC
3L	15055207	3L_15055207_SNP [dm3] 3L_15062107_SNP [dm6]	A	T	1.458e^-4	0.931	UPSTREAM CG13460 DOWNSTREAM CR43684 INTRON Sytbeta
2R	17676875	2R_17676875_SNP [dm3] 2R_21789370_SNP [dm6]	T	C	1.461e^-4	0.931	DOWNSTREAM lox2 INTERGENIC
3L	11857057	3L_11857057_SNP [dm3] 3L_11863957_SNP [dm6]	C	G	1.470e^-4	0.931	UPSTREAM CG44837 INTRON CG44837
3R	21123829	3R_21123829_SNP [dm3] 3R_25298107_SNP [dm6]	T	G	1.473e^-4	0.931	SYNONYMOUS_CODING CG31288 UPSTREAM CG31097	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25495223	3R_25495223_SNP [dm3] 3R_29669501_SNP [dm6]	A	G	1.474e^-4	0.931	SYNONYMOUS_CODING ppk30 UPSTREAM ppk20	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	4401786	2L_4401786_SNP [dm3] 2L_4401786_SNP [dm6]	A	T	1.477e^-4	0.931	INTRON CG33003	TF binding site mE1_TFBS_cad
2L	8853187	2L_8853187_SNP [dm3] 2L_8853187_SNP [dm6]	C	A	1.484e^-4	0.931	UPSTREAM CR45365 INTERGENIC	TF binding site mE1_TFBS_sens
2L	16591773	2L_16591773_SNP [dm3] 2L_16591773_SNP [dm6]	T	G	1.490e^-4	0.931	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	14693281	X_14693281_SNP [dm3] X_14799248_SNP [dm6]	A	C	1.490e^-4	0.931	INTRON rut	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10864989	2R_10864989_SNP [dm3] 2R_14977484_SNP [dm6]	G	C	1.491e^-4	0.931	INTRON ckn
X	9265635	X_9265635_SNP [dm3] X_9371602_SNP [dm6]	T	G	1.499e^-4	0.931	INTRON mgl	TF binding site mE1_TFBS_sens
3R	15231678	3R_15231678_SNP [dm3] 3R_19405956_SNP [dm6]	G	A	1.503e^-4	0.931	NON_SYNONYMOUS_CODING CG5316 UTR_3_PRIME CG5316
X	14678799	X_14678799_DEL [dm3] X_14784766_DEL [dm6]	TTCCTTACATGTAT...	CG	1.503e^-4	0.931	UTR_3_PRIME Ag5r UPSTREAM Ag5r2 DOWNSTREAM Ag5r
2L	3769968	2L_3769968_SNP [dm3] 2L_3769968_SNP [dm6]	A	T	1.525e^-4	0.931	DOWNSTREAM CG43707 EXON CR43704	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8092581	2R_8092581_SNP [dm3] 2R_12205076_SNP [dm6]	C	T	1.525e^-4	0.931	INTERGENIC
X	10880271	X_10880271_SNP [dm3] X_10986238_SNP [dm6]	G	T	1.542e^-4	0.931	INTRON CG42339
2L	15140448	2L_15140448_SNP [dm3] 2L_15140448_SNP [dm6]	A	C	1.544e^-4	0.931	INTERGENIC
3L	10094548	3L_10094548_SNP [dm3] 3L_10101448_SNP [dm6]	T	G	1.547e^-4	0.931	UPSTREAM CG42826 INTRON dpr6
2L	3756411	2L_3756411_SNP [dm3] 2L_3756411_SNP [dm6]	A	C	1.549e^-4	0.931	UPSTREAM CG43707 INTERGENIC
2L	3756412	2L_3756412_SNP [dm3] 2L_3756412_SNP [dm6]	T	A	1.549e^-4	0.931	UPSTREAM CG43707 INTERGENIC
3L	2913384	3L_2913384_SNP [dm3] 3L_2913384_SNP [dm6]	C	G	1.551e^-4	0.931	INTRON Shab
3R	23984927	3R_23984927_SNP [dm3] 3R_28159205_SNP [dm6]	A	G	1.552e^-4	0.931	INTRON CG34354
2R	17138928	2R_17138928_SNP [dm3] 2R_21251423_SNP [dm6]	C	T	1.556e^-4	0.931	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	8093874	2R_8093874_SNP [dm3] 2R_12206369_SNP [dm6]	G	A	1.564e^-4	0.931	EXON CR45276	TF binding site mE1_TFBS_cad
X	15323592	X_15323592_SNP [dm3] X_15429559_SNP [dm6]	A	T	1.579e^-4	0.931	INTRON Cngl
2L	4313687	2L_4313687_SNP [dm3] 2L_4313687_SNP [dm6]	T	C	1.585e^-4	0.931	INTRON tutl
2R	20172767	2R_20172767_DEL [dm3] 2R_24285244_DEL [dm6]	TT	T	1.585e^-4	0.931	INTRON nvy
3R	21417383	3R_21417383_SNP [dm3] 3R_25591661_SNP [dm6]	G	A	1.588e^-4	0.931	UTR_3_PRIME ymp INTRON msi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	19500575	2R_19500575_SNP [dm3] 2R_23613052_SNP [dm6]	T	A	1.594e^-4	0.931	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_inv
2L	7706550	2L_7706550_SNP [dm3] 2L_7706550_SNP [dm6]	C	A	1.595e^-4	0.931	INTRON Tep3	TF binding site mE1_TFBS_inv
X	15402116	X_15402116_SNP [dm3] X_15508083_SNP [dm6]	A	C	1.610e^-4	0.931	UPSTREAM mir-304 DOWNSTREAM mir-283 INTRON Gmap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12566537	2L_12566537_SNP [dm3] 2L_12566537_SNP [dm6]	C	T	1.625e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2270085	3L_2270085_SNP [dm3] 3L_2270085_SNP [dm6]	C	T	1.626e^-4	0.931	SYNONYMOUS_CODING yellow-g DOWNSTREAM CG32302	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
2L	20762272	2L_20762272_DEL [dm3] 2L_20762272_DEL [dm6]	CC	C	1.627e^-4	0.931	DOWNSTREAM dia INTRON dia	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8077982	2R_8077982_SNP [dm3] 2R_12190477_SNP [dm6]	A	G	1.631e^-4	0.931	UPSTREAM Cyp6t3 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	19862588	3R_19862588_SNP [dm3] 3R_24036866_SNP [dm6]	G	T	1.636e^-4	0.931	INTRON Miro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	8222422	2L_8222422_SNP [dm3] 2L_8222422_SNP [dm6]	A	G	1.643e^-4	0.931	INTRON Pvr
2L	16390911	2L_16390911_DEL [dm3] 2L_16390911_DEL [dm6]	TCAGAAT	T	1.643e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	11265255	3R_11265255_SNP [dm3] 3R_15439533_SNP [dm6]	A	T	1.649e^-4	0.931	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
2L	15102804	2L_15102804_SNP [dm3] 2L_15102804_SNP [dm6]	T	A	1.650e^-4	0.931	INTERGENIC
2L	15140447	2L_15140447_SNP [dm3] 2L_15140447_SNP [dm6]	G	C	1.652e^-4	0.931	INTERGENIC
2L	8820211	2L_8820211_SNP [dm3] 2L_8820211_SNP [dm6]	G	T	1.653e^-4	0.931	INTERGENIC
2L	8820213	2L_8820213_INS [dm3] 2L_8820213_INS [dm6]	T	TCTTTTTTTGTATCTTT...	1.653e^-4	0.931	INTERGENIC
X	3354419	X_3354419_SNP [dm3] X_3460386_SNP [dm6]	A	T	1.657e^-4	0.931	UPSTREAM CG10801 & 1 other INTRON CR44999
2L	6765722	2L_6765722_SNP [dm3] 2L_6765722_SNP [dm6]	C	T	1.658e^-4	0.931	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_cad
X	1246366	X_1246366_SNP [dm3] X_1352333_SNP [dm6]	C	T	1.667e^-4	0.931	SYNONYMOUS_CODING CG12773
2R	8090938	2R_8090938_SNP [dm3] 2R_12203433_SNP [dm6]	G	C	1.670e^-4	0.931	INTERGENIC
3R	24667321	3R_24667321_SNP [dm3] 3R_28841599_SNP [dm6]	T	G	1.675e^-4	0.931	INTRON Apc	TF binding site BDTNP1_TFBS_twi
2L	8820206	2L_8820206_MNP [dm3] 2L_8820206_MNP [dm6]	AAAA	TTGT	1.676e^-4	0.931	INTERGENIC
2L	6774457	2L_6774457_SNP [dm3] 2L_6774457_SNP [dm6]	C	A	1.677e^-4	0.931	UTR_5_PRIME CG17378
2L	19211696	2L_19211696_SNP [dm3] 2L_19211696_SNP [dm6]	T	G	1.683e^-4	0.931	INTERGENIC
2R	8101919	2R_8101919_SNP [dm3] 2R_12214414_SNP [dm6]	T	C	1.702e^-4	0.931	DOWNSTREAM CG13171 INTERGENIC
2L	7870804	2L_7870804_DEL [dm3] 2L_7870804_DEL [dm6]	TT	T	1.713e^-4	0.931	INTRON Proc
X	10477186	X_10477186_SNP [dm3] X_10583153_SNP [dm6]	G	A	1.716e^-4	0.931	INTRON spri	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6799844	2L_6799844_SNP [dm3] 2L_6799844_SNP [dm6]	T	A	1.736e^-4	0.931	UPSTREAM nrv2 DOWNSTREAM CG17376 & 2 others INTERGENIC	regulatory region REDfly_CRMs
X	13198859	X_13198859_SNP [dm3] X_13304826_SNP [dm6]	T	A	1.745e^-4	0.931	UPSTREAM CR45018 & 1 other INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_HSA
X	9432642	X_9432642_SNP [dm3] X_9538609_SNP [dm6]	T	G	1.745e^-4	0.931	INTRON CG32700
3R	3018422	3R_3018422_SNP [dm3] 3R_7192700_SNP [dm6]	G	A	1.751e^-4	0.931	INTRON lap
3R	23061101	3R_23061101_SNP [dm3] 3R_27235379_SNP [dm6]	G	C	1.751e^-4	0.931	SYNONYMOUS_CODING CG31068 INTRON CG31064
X	14540418	X_14540418_SNP [dm3] X_14646385_SNP [dm6]	A	T	1.763e^-4	0.931	INTRON NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5598873	2L_5598873_SNP [dm3] 2L_5598873_SNP [dm6]	T	C	1.765e^-4	0.931	DOWNSTREAM CG18266 INTERGENIC
3R	19182286	3R_19182286_SNP [dm3] 3R_23356564_SNP [dm6]	A	C	1.768e^-4	0.931	UTR_5_PRIME Sec13 UPSTREAM ATPsyn-Cf6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	17308612	3L_17308612_SNP [dm3] 3L_17315512_SNP [dm6]	A	T	1.770e^-4	0.931	DOWNSTREAM mir-219 INTERGENIC
3L	12097417	3L_12097417_SNP [dm3] 3L_12104317_SNP [dm6]	A	C	1.771e^-4	0.931	INTERGENIC
2L	7996510	2L_7996510_SNP [dm3] 2L_7996510_SNP [dm6]	G	C	1.774e^-4	0.931	SYNONYMOUS_CODING CG7227 DOWNSTREAM CR44996
3R	26572155	3R_26572155_SNP [dm3] 3R_30746433_SNP [dm6]	G	T	1.774e^-4	0.931	UPSTREAM Npc2h DOWNSTREAM CR43238 INTERGENIC	TF binding site mE1_TFBS_cad
2R	17139004	2R_17139004_SNP [dm3] 2R_21251499_SNP [dm6]	G	T	1.775e^-4	0.931	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	17243857	3L_17243857_SNP [dm3] 3L_17250757_SNP [dm6]	T	C	1.777e^-4	0.931	INTRON CR43870
X	15523394	X_15523394_SNP [dm3] X_15629361_SNP [dm6]	G	C	1.785e^-4	0.931	INTRON sog
3L	17202666	3L_17202666_SNP [dm3] 3L_17209566_SNP [dm6]	T	G	1.795e^-4	0.931	INTRON Rbp6
2L	8820212	2L_8820212_SNP [dm3] 2L_8820212_SNP [dm6]	A	C	1.806e^-4	0.931	INTERGENIC
3L	17684191	3L_17684191_SNP [dm3] 3L_17691091_SNP [dm6]	A	G	1.809e^-4	0.931	INTRON Ccn
3R	14739405	3R_14739405_SNP [dm3] 3R_18913683_SNP [dm6]	C	G	1.816e^-4	0.931	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	8820223	2L_8820223_SNP [dm3] 2L_8820223_SNP [dm6]	G	C	1.822e^-4	0.931	INTERGENIC
2L	7872718	2L_7872718_SNP [dm3] 2L_7872718_SNP [dm6]	G	A	1.839e^-4	0.931	UPSTREAM tRNA:G3:28D & 1 other DOWNSTREAM spz3 INTERGENIC
2L	19059159	2L_19059159_SNP [dm3] 2L_19059159_SNP [dm6]	C	T	1.841e^-4	0.931	START_GAINED Phlpp UTR_5_PRIME Phlpp UPSTREAM Phlpp DOWNSTREAM CG10492
2L	6359758	2L_6359758_SNP [dm3] 2L_6359758_SNP [dm6]	A	T	1.842e^-4	0.931	UPSTREAM CR44778 INTRON CR44777 EXON CR44777
2R	10892938	2R_10892938_SNP [dm3] 2R_15005433_SNP [dm6]	C	G	1.846e^-4	0.931	INTERGENIC
3L	1688001	3L_1688001_SNP [dm3] 3L_1688001_SNP [dm6]	C	G	1.846e^-4	0.931	UPSTREAM CG7991 INTRON CG7991
X	18441883	X_18441883_SNP [dm3] X_18547850_SNP [dm6]	G	T	1.849e^-4	0.931	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1517151	2L_1517151_SNP [dm3] 2L_1517151_SNP [dm6]	C	T	1.849e^-4	0.931	SYNONYMOUS_CODING CG18132 DOWNSTREAM halo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	7750090	2L_7750090_SNP [dm3] 2L_7750090_SNP [dm6]	T	A	1.853e^-4	0.931	INTERGENIC
2L	19087741	2L_19087741_SNP [dm3] 2L_19087741_SNP [dm6]	T	A	1.853e^-4	0.931	INTRON Lim3
3L	6287676	3L_6287676_SNP [dm3] 3L_6294576_SNP [dm6]	C	T	1.858e^-4	0.931	INTERGENIC
3R	4537013	3R_4537013_SNP [dm3] 3R_8711291_SNP [dm6]	A	T	1.862e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
2R	9211054	2R_9211054_SNP [dm3] 2R_13323549_SNP [dm6]	A	T	1.866e^-4	0.931	INTERGENIC
2L	16591693	2L_16591693_SNP [dm3] 2L_16591693_SNP [dm6]	G	A	1.872e^-4	0.931	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	13757075	2L_13757075_SNP [dm3] 2L_13757075_SNP [dm6]	A	G	1.875e^-4	0.931	DOWNSTREAM CR44846 INTRON TM9SF4
3R	19844863	3R_19844863_SNP [dm3] 3R_24019141_SNP [dm6]	T	A	1.877e^-4	0.931	INTRON KrT95D
2L	5894644	2L_5894644_SNP [dm3] 2L_5894644_SNP [dm6]	T	G	1.883e^-4	0.931	UPSTREAM Acp26Aa INTERGENIC
2R	16501559	2R_16501559_SNP [dm3] 2R_20614054_SNP [dm6]	A	G	1.891e^-4	0.931	INTRON Hil	TF binding site BDTNP1_TFBS_dl
3R	25518499	3R_25518499_SNP [dm3] 3R_29692777_SNP [dm6]	C	T	1.893e^-4	0.931	UTR_5_PRIME dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17139022	2R_17139022_SNP [dm3] 2R_21251517_SNP [dm6]	G	C	1.896e^-4	0.931	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	8085156	2R_8085156_SNP [dm3] 2R_12197651_SNP [dm6]	A	G	1.899e^-4	0.931	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25519047	3R_25519047_SNP [dm3] 3R_29693325_SNP [dm6]	T	C	1.905e^-4	0.931	INTRON dmrt99B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6359757	2L_6359757_SNP [dm3] 2L_6359757_SNP [dm6]	C	T	1.921e^-4	0.931	UPSTREAM CR44778 INTRON CR44777 EXON CR44777
2L	4224399	2L_4224399_SNP [dm3] 2L_4224399_SNP [dm6]	C	A	1.933e^-4	0.931	DOWNSTREAM CG3702 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	10055251	3R_10055251_SNP [dm3] 3R_14229529_SNP [dm6]	A	T	1.934e^-4	0.931	UPSTREAM CG9624 INTERGENIC
3L	12712129	3L_12712129_SNP [dm3] 3L_12719029_SNP [dm6]	C	T	1.950e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_Kr
2R	12088839	2R_12088839_SNP [dm3] 2R_16201334_SNP [dm6]	G	T	1.969e^-4	0.931	NON_SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8092527	2R_8092527_SNP [dm3] 2R_12205022_SNP [dm6]	C	T	1.970e^-4	0.931	INTERGENIC
2R	16055249	2R_16055249_SNP [dm3] 2R_20167744_SNP [dm6]	G	A	1.971e^-4	0.931	INTERGENIC
3L	2254768	3L_2254768_INS [dm3] 3L_2254768_INS [dm6]	A	GGGC	1.974e^-4	0.931	INTRON CG1275	TF binding site mE1_TFBS_cad
3L	2254763	3L_2254763_SNP [dm3] 3L_2254763_SNP [dm6]	C	A	1.975e^-4	0.931	INTRON CG1275	TF binding site mE1_TFBS_cad
2R	12664433	2R_12664433_SNP [dm3] 2R_16776928_SNP [dm6]	A	G	1.981e^-4	0.931	INTERGENIC
2L	15139033	2L_15139033_SNP [dm3] 2L_15139033_SNP [dm6]	G	A	1.988e^-4	0.931	INTERGENIC
3L	18589585	3L_18589585_SNP [dm3] 3L_18596485_SNP [dm6]	C	A	1.993e^-4	0.931	EXON CR45389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8485685	2R_8485685_SNP [dm3] 2R_12598180_SNP [dm6]	T	G	1.997e^-4	0.931	INTRON Amph
2R	7000867	2R_7000867_SNP [dm3] 2R_11113362_SNP [dm6]	G	A	2.004e^-4	0.931	INTRON luna
2R	8078006	2R_8078006_INS [dm3] 2R_12190501_INS [dm6]	G	GG	2.017e^-4	0.931	UPSTREAM Cyp6t3 & 1 other INTERGENIC
3L	4196562	3L_4196562_SNP [dm3] 3L_4196562_SNP [dm6]	G	A	2.019e^-4	0.931	SYNONYMOUS_CODING CG43367
3L	2254539	3L_2254539_SNP [dm3] 3L_2254539_SNP [dm6]	A	C	2.030e^-4	0.931	INTRON CG1275	TF binding site mE1_TFBS_cad
2R	16355377	2R_16355377_SNP [dm3] 2R_20467872_SNP [dm6]	G	T	2.031e^-4	0.931	INTRON CG12484
2R	8084645	2R_8084645_SNP [dm3] 2R_12197140_SNP [dm6]	G	A	2.032e^-4	0.931	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
3R	9019797	3R_9019797_SNP [dm3] 3R_13194075_SNP [dm6]	A	G	2.047e^-4	0.931	INTERGENIC
2R	18014530	2R_18014530_SNP [dm3] 2R_22127025_SNP [dm6]	C	T	2.047e^-4	0.931	SYNONYMOUS_CODING GM130 UPSTREAM NtR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25519037	3R_25519037_SNP [dm3] 3R_29693315_SNP [dm6]	G	T	2.049e^-4	0.931	INTRON dmrt99B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2849392	3L_2849392_SNP [dm3] 3L_2849392_SNP [dm6]	G	A	2.055e^-4	0.931	INTRON CG43444	TF binding site mE1_TFBS_cad
3L	13307584	3L_13307584_SNP [dm3] 3L_13314484_SNP [dm6]	T	A	2.060e^-4	0.931	INTERGENIC
3L	10897558	3L_10897558_SNP [dm3] 3L_10904458_SNP [dm6]	A	G	2.062e^-4	0.931	INTERGENIC
3L	2210308	3L_2210308_SNP [dm3] 3L_2210308_SNP [dm6]	C	A	2.069e^-4	0.931	DOWNSTREAM CG15878 INTERGENIC
2R	20279716	2R_20279716_INS [dm3] 2R_24392193_INS [dm6]	T	TGTAT	2.073e^-4	0.931	UTR_3_PRIME slik DOWNSTREAM slik & 1 other
3L	14367961	3L_14367961_SNP [dm3] 3L_14374861_SNP [dm6]	C	T	2.074e^-4	0.931	INTERGENIC
2R	7872622	2R_7872622_SNP [dm3] 2R_11985117_SNP [dm6]	C	T	2.079e^-4	0.931	UPSTREAM CG34231 INTRON RnrS	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	18598450	3L_18598450_SNP [dm3] 3L_18605350_SNP [dm6]	C	G	2.086e^-4	0.931	NON_SYNONYMOUS_CODING CG18234 UPSTREAM CG18233 INTRON CG4174 & 1 other
2L	7185816	2L_7185816_SNP [dm3] 2L_7185816_SNP [dm6]	C	T	2.090e^-4	0.931	UTR_3_PRIME CG4496 DOWNSTREAM CG4495
2L	5760719	2L_5760719_SNP [dm3] 2L_5760719_SNP [dm6]	T	A	2.091e^-4	0.931	UTR_3_PRIME CG11030 DOWNSTREAM CG11030
3R	26132573	3R_26132573_SNP [dm3] 3R_30306851_SNP [dm6]	G	T	2.095e^-4	0.931	UPSTREAM CG34300 INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24052661	3R_24052661_SNP [dm3] 3R_28226939_SNP [dm6]	A	T	2.097e^-4	0.931	INTRON CG34354
3R	9836548	3R_9836548_SNP [dm3] 3R_14010826_SNP [dm6]	T	C	2.101e^-4	0.931	INTRON rdx
2L	13677330	2L_13677330_SNP [dm3] 2L_13677330_SNP [dm6]	C	T	2.103e^-4	0.931	UTR_3_PRIME CG31814 DOWNSTREAM CG31814
2L	8820140	2L_8820140_SNP [dm3] 2L_8820140_SNP [dm6]	G	C	2.109e^-4	0.931	INTERGENIC
2R	18621504	2R_18621504_SNP [dm3] 2R_22733999_SNP [dm6]	A	G	2.111e^-4	0.931	SYNONYMOUS_CODING jbug
X	13198834	X_13198834_SNP [dm3] X_13304801_SNP [dm6]	C	T	2.111e^-4	0.931	UPSTREAM CR45018 & 1 other INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10565875	X_10565875_SNP [dm3] X_10671842_SNP [dm6]	T	C	2.116e^-4	0.931	DOWNSTREAM CG12637 INTRON X11Lbeta
3R	26572900	3R_26572900_SNP [dm3] 3R_30747178_SNP [dm6]	G	A	2.120e^-4	0.931	UPSTREAM Npc2h & 1 other INTERGENIC
2L	3756347	2L_3756347_SNP [dm3] 2L_3756347_SNP [dm6]	G	T	2.127e^-4	0.931	UPSTREAM CG43707 INTERGENIC
3L	13433038	3L_13433038_SNP [dm3] 3L_13439938_SNP [dm6]	A	G	2.128e^-4	0.931	SYNONYMOUS_CODING CG10140 UPSTREAM CG14109 DOWNSTREAM CG10725
X	2430311	X_2430311_SNP [dm3] X_2536278_SNP [dm6]	C	A	2.135e^-4	0.931	INTRON trol	TF binding site mE1_TFBS_bab1
3L	17227297	3L_17227297_SNP [dm3] 3L_17234197_SNP [dm6]	G	C	2.137e^-4	0.931	INTRON Rbp6	TF binding site BDTNP1_TFBS_twi
2R	9560225	2R_9560225_SNP [dm3] 2R_13672720_SNP [dm6]	T	A	2.140e^-4	0.931	UPSTREAM CR45031 INTRON fas
3R	21072860	3R_21072860_SNP [dm3] 3R_25247138_SNP [dm6]	C	A	2.142e^-4	0.931	UPSTREAM Nup37 INTRON RpS27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
2R	9800917	2R_9800917_SNP [dm3] 2R_13913412_SNP [dm6]	G	T	2.143e^-4	0.931	INTRON shot	TF binding site mE1_TFBS_inv
3L	6857031	3L_6857031_SNP [dm3] 3L_6863931_SNP [dm6]	T	G	2.144e^-4	0.931	INTERGENIC
2L	5605222	2L_5605222_SNP [dm3] 2L_5605222_SNP [dm6]	G	T	2.146e^-4	0.931	INTRON CG14010
2L	15038856	2L_15038856_SNP [dm3] 2L_15038856_SNP [dm6]	A	G	2.152e^-4	0.931	START_GAINED CIAPIN1 UTR_5_PRIME CIAPIN1 UPSTREAM Su_H_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	8060142	2R_8060142_SNP [dm3] 2R_12172637_SNP [dm6]	G	A	2.153e^-4	0.931	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3R	22886296	3R_22886296_SNP [dm3] 3R_27060574_SNP [dm6]	C	A	2.155e^-4	0.931	INTRON Nep5
3R	14717872	3R_14717872_SNP [dm3] 3R_18892150_SNP [dm6]	A	G	2.155e^-4	0.931	INTERGENIC
3R	9755280	3R_9755280_SNP [dm3] 3R_13929558_SNP [dm6]	A	C	2.178e^-4	0.931	INTERGENIC
2L	13756906	2L_13756906_SNP [dm3] 2L_13756906_SNP [dm6]	G	C	2.192e^-4	0.931	DOWNSTREAM CR44846 INTRON TM9SF4
2L	3947602	2L_3947602_SNP [dm3] 2L_3947602_SNP [dm6]	A	G	2.192e^-4	0.931	INTRON fred
2L	9235720	2L_9235720_SNP [dm3] 2L_9235720_SNP [dm6]	T	C	2.196e^-4	0.931	DOWNSTREAM tRNA:CR31885 INTRON tai
X	2430309	X_2430309_SNP [dm3] X_2536276_SNP [dm6]	G	C	2.199e^-4	0.931	INTRON trol	TF binding site mE1_TFBS_bab1
3L	1454388	3L_1454388_SNP [dm3] 3L_1454388_SNP [dm6]	G	C	2.206e^-4	0.931	INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
2L	5617463	2L_5617463_SNP [dm3] 2L_5617463_SNP [dm6]	C	T	2.210e^-4	0.931	INTRON CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18180214	X_18180214_SNP [dm3] X_18286181_SNP [dm6]	T	C	2.212e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	21482372	3R_21482372_SNP [dm3] 3R_25656650_SNP [dm6]	G	T	2.219e^-4	0.931	SYNONYMOUS_CODING Tnks	TF binding site mE1_TFBS_sens
2L	2157906	2L_2157906_SNP [dm3] 2L_2157906_SNP [dm6]	T	C	2.223e^-4	0.931	UTR_3_PRIME aop	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11309190	3L_11309190_SNP [dm3] 3L_11316090_SNP [dm6]	A	T	2.225e^-4	0.931	EXON CR44361	TF binding site BDTNP1_TFBS_twi
2R	8898177	2R_8898177_SNP [dm3] 2R_13010672_SNP [dm6]	A	T	2.236e^-4	0.931	INTERGENIC
X	15001814	X_15001814_SNP [dm3] X_15107781_SNP [dm6]	T	C	2.237e^-4	0.931	INTRON Rab3-GEF
2L	8755925	2L_8755925_SNP [dm3] 2L_8755925_SNP [dm6]	G	A	2.239e^-4	0.931	INTERGENIC
2R	17139033	2R_17139033_SNP [dm3] 2R_21251528_SNP [dm6]	T	G	2.241e^-4	0.931	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7889955	2R_7889955_SNP [dm3] 2R_12002450_SNP [dm6]	G	A	2.247e^-4	0.931	SYNONYMOUS_CODING otk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25518937	3R_25518937_SNP [dm3] 3R_29693215_SNP [dm6]	T	G	2.263e^-4	0.931	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21101001	3R_21101001_SNP [dm3] 3R_25275279_SNP [dm6]	A	T	2.269e^-4	0.931	DOWNSTREAM CG10513 & 1 other INTERGENIC
2L	6229765	2L_6229765_SNP [dm3] 2L_6229765_SNP [dm6]	C	T	2.272e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15004955	X_15004955_SNP [dm3] X_15110922_SNP [dm6]	T	C	2.275e^-4	0.931	DOWNSTREAM Rab3-GEF INTRON Rab3-GEF
2R	8079280	2R_8079280_SNP [dm3] 2R_12191775_SNP [dm6]	G	A	2.281e^-4	0.931	SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
X	2430328	X_2430328_DEL [dm3] X_2536295_DEL [dm6]	TT	T	2.286e^-4	0.931	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	24555623	3R_24555623_SNP [dm3] 3R_28729901_SNP [dm6]	A	T	2.292e^-4	0.931	INTRON htt
2R	10893877	2R_10893877_INS [dm3] 2R_15006372_INS [dm6]	T	TC	2.300e^-4	0.931	INTERGENIC
3L	5570717	3L_5570717_SNP [dm3] 3L_5577617_SNP [dm6]	G	T	2.315e^-4	0.931	UPSTREAM Msr-110 INTERGENIC
3R	26572162	3R_26572162_SNP [dm3] 3R_30746440_SNP [dm6]	A	G	2.317e^-4	0.931	UPSTREAM Npc2h DOWNSTREAM CR43238 INTERGENIC	TF binding site mE1_TFBS_cad
2R	8079175	2R_8079175_SNP [dm3] 2R_12191670_SNP [dm6]	T	G	2.320e^-4	0.931	NON_SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
2R	10850959	2R_10850959_SNP [dm3] 2R_14963454_SNP [dm6]	A	T	2.320e^-4	0.931	UTR_5_PRIME ckn UPSTREAM aPKC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9511821	2R_9511821_SNP [dm3] 2R_13624316_SNP [dm6]	C	G	2.332e^-4	0.931	INTRON fas	TF binding site mE1_TFBS_HSA
3R	21123568	3R_21123568_SNP [dm3] 3R_25297846_SNP [dm6]	G	A	2.338e^-4	0.931	UPSTREAM CG31097 DOWNSTREAM CG31288 INTERGENIC	TF binding site mE1_TFBS_sens
2R	9512706	2R_9512706_SNP [dm3] 2R_13625201_SNP [dm6]	A	T	2.354e^-4	0.931	INTRON fas
3L	6857012	3L_6857012_SNP [dm3] 3L_6863912_SNP [dm6]	T	C	2.357e^-4	0.931	INTERGENIC
2L	15140570	2L_15140570_SNP [dm3] 2L_15140570_SNP [dm6]	T	C	2.362e^-4	0.931	INTERGENIC
3L	8302505	3L_8302505_SNP [dm3] 3L_8309405_SNP [dm6]	A	T	2.371e^-4	0.931	UPSTREAM BI-1 EXON CR45409	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3R	19182221	3R_19182221_SNP [dm3] 3R_23356499_SNP [dm6]	T	C	2.378e^-4	0.931	UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	22598272	2L_22598272_SNP [dm3] 2L_22705540_SNP [dm6]	G	T	2.383e^-4	0.931	INTRON CG40006
2L	14335478	2L_14335478_SNP [dm3] 2L_14335478_SNP [dm6]	A	T	2.399e^-4	0.931	INTRON CG33090
2R	11890813	2R_11890813_SNP [dm3] 2R_16003308_SNP [dm6]	C	T	2.403e^-4	0.931	SYNONYMOUS_CODING CG8370	TF binding site mE1_TFBS_cad
2R	8079569	2R_8079569_SNP [dm3] 2R_12192064_SNP [dm6]	A	T	2.425e^-4	0.931	SYNONYMOUS_CODING Cyp6t3 DOWNSTREAM CG8858
3R	26581998	3R_26581998_SNP [dm3] 3R_30756276_SNP [dm6]	A	G	2.431e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14883274	2R_14883274_SNP [dm3] 2R_18995769_SNP [dm6]	T	G	2.433e^-4	0.931	DOWNSTREAM snoRNA:abba-a INTRON tn
2R	16728324	2R_16728324_SNP [dm3] 2R_20840819_SNP [dm6]	G	A	2.439e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	18192177	3R_18192177_SNP [dm3] 3R_22366455_SNP [dm6]	G	A	2.445e^-4	0.931	SYNONYMOUS_CODING CG5380 UPSTREAM CG5382	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	4510213	X_4510213_SNP [dm3] X_4616180_SNP [dm6]	G	T	2.454e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	1841205	3L_1841205_SNP [dm3] 3L_1841205_SNP [dm6]	G	A	2.455e^-4	0.931	INTRON Cpr62Bc	TF binding site mE1_TFBS_chinmo
3L	467696	3L_467696_SNP [dm3] 3L_467696_SNP [dm6]	C	A	2.459e^-4	0.931	INTRON klar
2L	8755903	2L_8755903_SNP [dm3] 2L_8755903_SNP [dm6]	T	A	2.460e^-4	0.931	INTERGENIC
2L	15038960	2L_15038960_SNP [dm3] 2L_15038960_SNP [dm6]	T	A	2.464e^-4	0.931	UPSTREAM Su_H_ & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	7585266	3R_7585266_SNP [dm3] 3R_11759544_SNP [dm6]	C	T	2.468e^-4	0.931	INTRON Lk6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7891177	2R_7891177_SNP [dm3] 2R_12003672_SNP [dm6]	G	T	2.474e^-4	0.931	SYNONYMOUS_CODING otk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7637546	2L_7637546_SNP [dm3] 2L_7637546_SNP [dm6]	C	T	2.480e^-4	0.931	DOWNSTREAM CR44799 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	17477015	3L_17477015_SNP [dm3] 3L_17483915_SNP [dm6]	G	A	2.492e^-4	0.931	INTRON CG6333
3L	17185722	3L_17185722_SNP [dm3] 3L_17192622_SNP [dm6]	T	A	2.496e^-4	0.931	INTRON Rbp6
2R	8101945	2R_8101945_SNP [dm3] 2R_12214440_SNP [dm6]	G	T	2.499e^-4	0.931	DOWNSTREAM CG13171 INTERGENIC
3L	17202630	3L_17202630_SNP [dm3] 3L_17209530_SNP [dm6]	G	A	2.500e^-4	0.931	INTRON Rbp6
2L	1425135	2L_1425135_SNP [dm3] 2L_1425135_SNP [dm6]	T	G	2.507e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3057318	2L_3057318_DEL [dm3] 2L_3057318_DEL [dm6]	GG	G	2.509e^-4	0.931	INTRON CG3523	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	7584597	3R_7584597_SNP [dm3] 3R_11758875_SNP [dm6]	C	T	2.519e^-4	0.931	INTRON Lk6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl mE1_TFBS_zfh1
3L	9141771	3L_9141771_SNP [dm3] 3L_9148671_SNP [dm6]	C	T	2.519e^-4	0.931	UTR_3_PRIME Rdl DOWNSTREAM Rdl
2R	8085097	2R_8085097_SNP [dm3] 2R_12197592_SNP [dm6]	T	C	2.524e^-4	0.931	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8820342	2L_8820342_SNP [dm3] 2L_8820342_SNP [dm6]	C	T	2.532e^-4	0.931	INTERGENIC
2R	4468220	2R_4468220_SNP [dm3] 2R_8580715_SNP [dm6]	T	C	2.547e^-4	0.931	INTRON CG42326
2R	8094113	2R_8094113_SNP [dm3] 2R_12206608_SNP [dm6]	A	G	2.551e^-4	0.931	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5637638	2L_5637638_SNP [dm3] 2L_5637638_SNP [dm6]	G	T	2.552e^-4	0.931	INTRON CG31646
2R	7886653	2R_7886653_SNP [dm3] 2R_11999148_SNP [dm6]	G	T	2.569e^-4	0.931	INTERGENIC
3R	2228093	3R_2228093_SNP [dm3] 3R_6402371_SNP [dm6]	A	T	2.571e^-4	0.931	INTRON Dmtn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19537921	3R_19537921_SNP [dm3] 3R_23712199_SNP [dm6]	C	T	2.572e^-4	0.931	SYNONYMOUS_CODING CG10300 DOWNSTREAM CG10301 & 1 other
3R	9755290	3R_9755290_SNP [dm3] 3R_13929568_SNP [dm6]	A	T	2.575e^-4	0.931	INTERGENIC
3L	4186282	3L_4186282_SNP [dm3] 3L_4186282_SNP [dm6]	G	A	2.589e^-4	0.931	UTR_3_PRIME VhaM9.7-c INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_dl
X	18173144	X_18173144_SNP [dm3] X_18279111_SNP [dm6]	G	A	2.590e^-4	0.931	INTRON upd3
3L	13135613	3L_13135613_INS [dm3] 3L_13142513_INS [dm6]	C	CGC	2.593e^-4	0.931	INTERGENIC
2R	10850599	2R_10850599_SNP [dm3] 2R_14963094_SNP [dm6]	T	C	2.597e^-4	0.931	UPSTREAM ckn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	12706605	3R_12706605_SNP [dm3] 3R_16880883_SNP [dm6]	C	T	2.598e^-4	0.931	INTRON iab-8
2R	8101905	2R_8101905_SNP [dm3] 2R_12214400_SNP [dm6]	T	G	2.601e^-4	0.931	DOWNSTREAM CG13171 INTERGENIC
2R	8060123	2R_8060123_SNP [dm3] 2R_12172618_SNP [dm6]	A	G	2.610e^-4	0.931	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2L	7352710	2L_7352710_SNP [dm3] 2L_7352710_SNP [dm6]	G	A	2.622e^-4	0.931	DOWNSTREAM Wnt6 INTERGENIC
2R	4572597	2R_4572597_SNP [dm3] 2R_8685092_SNP [dm6]	A	G	2.625e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10599843	3L_10599843_SNP [dm3] 3L_10606743_SNP [dm6]	A	T	2.628e^-4	0.931	INTERGENIC
3L	17227271	3L_17227271_SNP [dm3] 3L_17234171_SNP [dm6]	A	C	2.643e^-4	0.931	INTRON Rbp6	TF binding site BDTNP1_TFBS_twi
X	11841895	X_11841895_DEL [dm3] X_11947862_DEL [dm6]	TAT	T	2.647e^-4	0.931	INTRON cac
2R	8105491	2R_8105491_SNP [dm3] 2R_12217986_SNP [dm6]	A	C	2.657e^-4	0.931	INTERGENIC
2R	8898205	2R_8898205_SNP [dm3] 2R_13010700_SNP [dm6]	C	A	2.669e^-4	0.931	INTERGENIC
2L	9501675	2L_9501675_SNP [dm3] 2L_9501675_SNP [dm6]	G	A	2.673e^-4	0.931	INTRON CG33298
2L	11410839	2L_11410839_SNP [dm3] 2L_11410839_SNP [dm6]	T	C	2.677e^-4	0.931	INTERGENIC	regulatory region REDfly_CRMs
3R	14739349	3R_14739349_SNP [dm3] 3R_18913627_SNP [dm6]	A	C	2.687e^-4	0.931	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	20159567	2R_20159567_SNP [dm3] 2R_24272044_SNP [dm6]	C	A	2.691e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1217248	X_1217248_SNP [dm3] X_1323215_SNP [dm6]	G	C	2.698e^-4	0.931	NON_SYNONYMOUS_CODING fs_1_N UPSTREAM DAAM	TF binding site mE1_TFBS_chinmo
3L	10702469	3L_10702469_SNP [dm3] 3L_10709369_SNP [dm6]	C	T	2.699e^-4	0.931	INTERGENIC
X	10477124	X_10477124_SNP [dm3] X_10583091_SNP [dm6]	G	C	2.699e^-4	0.931	INTRON spri	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21084746	3R_21084746_SNP [dm3] 3R_25259024_SNP [dm6]	T	C	2.700e^-4	0.931	UTR_5_PRIME CG11857 DOWNSTREAM Nup358	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
X	7588138	X_7588138_DEL [dm3] X_7694105_DEL [dm6]	AGT	A	2.702e^-4	0.931	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
X	7588141	X_7588141_INS [dm3] X_7694108_INS [dm6]	A	AATGAAAAT	2.702e^-4	0.931	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
2L	15140462	2L_15140462_SNP [dm3] 2L_15140462_SNP [dm6]	G	A	2.704e^-4	0.931	INTERGENIC
2R	10073791	2R_10073791_SNP [dm3] 2R_14186286_SNP [dm6]	G	T	2.712e^-4	0.931	SYNONYMOUS_CODING CG30069	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10900158	3L_10900158_SNP [dm3] 3L_10907058_SNP [dm6]	C	A	2.721e^-4	0.931	INTERGENIC
2R	13944373	2R_13944373_SNP [dm3] 2R_18056868_SNP [dm6]	G	T	2.726e^-4	0.931	NON_SYNONYMOUS_CODING CG10912	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10013361	2R_10013361_SNP [dm3] 2R_14125856_SNP [dm6]	A	C	2.734e^-4	0.931	INTRON Prosap
X	947361	X_947361_SNP [dm3] X_1053328_SNP [dm6]	G	A	2.734e^-4	0.931	DOWNSTREAM CG14629 INTRON CR44779
2L	20034558	2L_20034558_SNP [dm3] 2L_20034558_SNP [dm6]	A	T	2.739e^-4	0.931	INTRON sNPF
3R	13382557	3R_13382557_SNP [dm3] 3R_17556835_SNP [dm6]	G	A	2.739e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	16626740	2R_16626740_SNP [dm3] 2R_20739235_SNP [dm6]	G	A	2.749e^-4	0.931	INTRON dpr
3L	12097560	3L_12097560_DEL [dm3] 3L_12104460_DEL [dm6]	CC	C	2.754e^-4	0.931	INTERGENIC
3L	2260325	3L_2260325_SNP [dm3] 3L_2260325_SNP [dm6]	G	A	2.761e^-4	0.931	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19053405	2L_19053405_SNP [dm3] 2L_19053405_SNP [dm6]	C	A	2.762e^-4	0.931	SYNONYMOUS_CODING Rpn3 UPSTREAM CG10492	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2260562	3L_2260562_SNP [dm3] 3L_2260562_SNP [dm6]	C	T	2.763e^-4	0.931	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2255924	3L_2255924_SNP [dm3] 3L_2255924_SNP [dm6]	A	C	2.765e^-4	0.931	UTR_5_PRIME CG1275 INTRON CG1275	TF binding site mE1_TFBS_chinmo
2R	10850623	2R_10850623_SNP [dm3] 2R_14963118_SNP [dm6]	C	G	2.782e^-4	0.931	UPSTREAM ckn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	15559356	3R_15559356_SNP [dm3] 3R_19733634_SNP [dm6]	C	T	2.801e^-4	0.931	INTRON GluClalpha
3L	20872321	3L_20872321_SNP [dm3] 3L_20879221_SNP [dm6]	T	A	2.805e^-4	0.931	INTRON CG32432
X	13217073	X_13217073_INS [dm3] X_13323040_INS [dm6]	C	CGCAGCCCCACTCAC...	2.807e^-4	0.931	INTRON IP3K2	TF binding site mE1_TFBS_HSA
2R	19671107	2R_19671107_SNP [dm3] 2R_23783584_SNP [dm6]	G	A	2.808e^-4	0.931	INTRON CG9850
2R	12290830	2R_12290830_SNP [dm3] 2R_16403325_SNP [dm6]	G	A	2.808e^-4	0.931	INTRON Sema-2b
2R	12290832	2R_12290832_SNP [dm3] 2R_16403327_SNP [dm6]	T	A	2.808e^-4	0.931	INTRON Sema-2b
3L	17227250	3L_17227250_SNP [dm3] 3L_17234150_SNP [dm6]	T	G	2.808e^-4	0.931	INTRON Rbp6	TF binding site BDTNP1_TFBS_twi
2R	17139032	2R_17139032_SNP [dm3] 2R_21251527_SNP [dm6]	C	A	2.811e^-4	0.931	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	8068113	2R_8068113_SNP [dm3] 2R_12180608_SNP [dm6]	T	G	2.811e^-4	0.931	UPSTREAM wash & 1 other DOWNSTREAM CR45264 INTRON wash	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10929746	2R_10929746_DEL [dm3] 2R_15042241_DEL [dm6]	ACATTTCACTTTG...	A	2.829e^-4	0.931	DOWNSTREAM hbs INTERGENIC
2L	8755904	2L_8755904_SNP [dm3] 2L_8755904_SNP [dm6]	A	T	2.841e^-4	0.931	INTERGENIC
3R	21084349	3R_21084349_SNP [dm3] 3R_25258627_SNP [dm6]	G	T	2.844e^-4	0.931	UTR_3_PRIME Nup358 UPSTREAM CG11857	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
3R	22898009	3R_22898009_SNP [dm3] 3R_27072287_SNP [dm6]	T	C	2.851e^-4	0.931	INTERGENIC
2R	18014324	2R_18014324_SNP [dm3] 2R_22126819_SNP [dm6]	T	C	2.856e^-4	0.931	NON_SYNONYMOUS_CODING GM130 UPSTREAM NtR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	12132532	2R_12132532_SNP [dm3] 2R_16245027_SNP [dm6]	A	G	2.856e^-4	0.931	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2897613	X_2897613_SNP [dm3] X_3003580_SNP [dm6]	G	A	2.858e^-4	0.931	INTRON kirre
3R	7250834	3R_7250834_SNP [dm3] 3R_11425112_SNP [dm6]	C	T	2.859e^-4	0.931	SYNONYMOUS_CODING CG5270	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6510543	2L_6510543_SNP [dm3] 2L_6510543_SNP [dm6]	C	T	2.863e^-4	0.931	INTRON CG31637
2R	18014455	2R_18014455_SNP [dm3] 2R_22126950_SNP [dm6]	G	T	2.863e^-4	0.931	SYNONYMOUS_CODING GM130 UPSTREAM NtR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8149247	X_8149247_SNP [dm3] X_8255214_SNP [dm6]	C	G	2.875e^-4	0.931	INTRON CG1632
2R	16104405	2R_16104405_SNP [dm3] 2R_20216900_SNP [dm6]	C	G	2.876e^-4	0.931	INTERGENIC
3L	22963767	3L_22963767_SNP [dm3] 3L_22970667_SNP [dm6]	T	C	2.880e^-4	0.931	INTERGENIC
2L	5918760	2L_5918760_SNP [dm3] 2L_5918760_SNP [dm6]	T	C	2.883e^-4	0.931	SYNONYMOUS_CODING bchs
3R	21083111	3R_21083111_SNP [dm3] 3R_25257389_SNP [dm6]	G	C	2.887e^-4	0.931	NON_SYNONYMOUS_CODING Nup358	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8095598	2R_8095598_SNP [dm3] 2R_12208093_SNP [dm6]	T	G	2.887e^-4	0.931	DOWNSTREAM CR45276 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17323312	2R_17323312_SNP [dm3] 2R_21435807_SNP [dm6]	C	T	2.909e^-4	0.931	INTRON Sdc
2L	13677366	2L_13677366_SNP [dm3] 2L_13677366_SNP [dm6]	G	A	2.910e^-4	0.931	UTR_3_PRIME CG31814 DOWNSTREAM CG31814
3R	19537915	3R_19537915_SNP [dm3] 3R_23712193_SNP [dm6]	A	G	2.910e^-4	0.931	SYNONYMOUS_CODING CG10300 DOWNSTREAM CG10301 & 1 other
3L	6857020	3L_6857020_SNP [dm3] 3L_6863920_SNP [dm6]	C	T	2.911e^-4	0.931	INTERGENIC
3R	24503719	3R_24503719_SNP [dm3] 3R_28677997_SNP [dm6]	A	G	2.913e^-4	0.931	INTRON CG9990
3R	26120950	3R_26120950_SNP [dm3] 3R_30295228_SNP [dm6]	A	C	2.914e^-4	0.931	INTRON hdc
2R	3599899	2R_3599899_SNP [dm3] 2R_7712394_SNP [dm6]	A	G	2.920e^-4	0.931	UPSTREAM CG1942 DOWNSTREAM mir-4909 & 1 other INTERGENIC
3L	15012085	3L_15012085_SNP [dm3] 3L_15018985_SNP [dm6]	C	T	2.922e^-4	0.931	INTRON Sytbeta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7890036	2R_7890036_SNP [dm3] 2R_12002531_SNP [dm6]	A	G	2.928e^-4	0.931	SYNONYMOUS_CODING otk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15194604	3R_15194604_SNP [dm3] 3R_19368882_SNP [dm6]	G	T	2.954e^-4	0.931	DOWNSTREAM Ino80 INTERGENIC
2L	21722416	2L_21722416_SNP [dm3] 2L_21722416_SNP [dm6]	G	A	2.955e^-4	0.931	INTRON CG31619
3L	18171695	3L_18171695_SNP [dm3] 3L_18178595_SNP [dm6]	A	C	2.967e^-4	0.931	INTRON W
2R	16818156	2R_16818156_SNP [dm3] 2R_20930651_SNP [dm6]	C	G	2.968e^-4	0.931	INTRON Rx
3L	12111871	3L_12111871_SNP [dm3] 3L_12118771_SNP [dm6]	T	C	2.970e^-4	0.931	SYNONYMOUS_CODING ssp DOWNSTREAM l_3_j2D3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26571968	3R_26571968_SNP [dm3] 3R_30746246_SNP [dm6]	A	G	2.975e^-4	0.931	SYNONYMOUS_CODING Npc2h UPSTREAM Npc2g DOWNSTREAM CR43238	TF binding site mE1_TFBS_cad
2L	8208249	2L_8208249_SNP [dm3] 2L_8208249_SNP [dm6]	C	A	2.975e^-4	0.931	SYNONYMOUS_CODING CG8419	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	11904720	2R_11904720_SNP [dm3] 2R_16017215_SNP [dm6]	C	G	3.006e^-4	0.931	UPSTREAM CG8399 & 1 other INTERGENIC
3L	11851831	3L_11851831_SNP [dm3] 3L_11858731_SNP [dm6]	C	T	3.008e^-4	0.931	INTRON CG44837
2L	14374726	2L_14374726_SNP [dm3] 2L_14374726_SNP [dm6]	G	A	3.011e^-4	0.931	INTERGENIC
3L	9410279	3L_9410279_SNP [dm3] 3L_9417179_SNP [dm6]	C	G	3.012e^-4	0.931	NON_SYNONYMOUS_CODING CG3982 INTRON CG3967	TF binding site mE1_TFBS_cad
3L	7899698	3L_7899698_SNP [dm3] 3L_7906598_SNP [dm6]	C	T	3.034e^-4	0.931	INTRON pbl
X	20402045	X_20402045_SNP [dm3] X_20531018_SNP [dm6]	T	A	3.037e^-4	0.931	INTERGENIC
3L	9365891	3L_9365891_SNP [dm3] 3L_9372791_SNP [dm6]	C	T	3.051e^-4	0.931	UTR_5_PRIME Hsp67Bb UPSTREAM Hsp22 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8825375	2L_8825375_SNP [dm3] 2L_8825375_SNP [dm6]	T	A	3.054e^-4	0.931	UPSTREAM SoxN INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	18422706	2L_18422706_SNP [dm3] 2L_18422706_SNP [dm6]	T	A	3.056e^-4	0.931	INTERGENIC
2L	16107409	2L_16107409_SNP [dm3] 2L_16107409_SNP [dm6]	A	C	3.057e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18254496	2L_18254496_SNP [dm3] 2L_18254496_SNP [dm6]	G	T	3.062e^-4	0.931	INTRON CG42750
3R	21082685	3R_21082685_SNP [dm3] 3R_25256963_SNP [dm6]	C	T	3.071e^-4	0.931	SYNONYMOUS_CODING Nup358	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7004009	2R_7004009_SNP [dm3] 2R_11116504_SNP [dm6]	C	T	3.072e^-4	0.931	UPSTREAM luna DOWNSTREAM Cyp12d1-p INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	844852	2R_844852_SNP [dm3] 2R_4957347_SNP [dm6]	C	T	3.099e^-4	0.931	INTRON Ir41a	transposable element FlyBase
X	17656380	X_17656380_SNP [dm3] X_17762347_SNP [dm6]	G	T	3.107e^-4	0.931	INTERGENIC
3L	18190049	3L_18190049_SNP [dm3] 3L_18196949_SNP [dm6]	G	T	3.108e^-4	0.931	DOWNSTREAM CR45234 INTERGENIC
X	2430417	X_2430417_SNP [dm3] X_2536384_SNP [dm6]	C	T	3.112e^-4	0.931	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	12290783	2R_12290783_SNP [dm3] 2R_16403278_SNP [dm6]	C	T	3.113e^-4	0.931	INTRON Sema-2b
2R	12290875	2R_12290875_SNP [dm3] 2R_16403370_SNP [dm6]	G	A	3.113e^-4	0.931	INTRON Sema-2b
2R	5844819	2R_5844819_SNP [dm3] 2R_9957314_SNP [dm6]	C	A	3.127e^-4	0.931	INTRON Mef2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	15140593	2L_15140593_SNP [dm3] 2L_15140593_SNP [dm6]	A	G	3.128e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	6129387	2L_6129387_SNP [dm3] 2L_6129387_SNP [dm6]	G	A	3.130e^-4	0.931	SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13710323	2R_13710323_SNP [dm3] 2R_17822818_SNP [dm6]	G	T	3.133e^-4	0.931	UPSTREAM grh INTRON grh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi transposable element FlyBase
2L	1006827	2L_1006827_SNP [dm3] 2L_1006827_SNP [dm6]	A	G	3.145e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	9078765	3R_9078765_SNP [dm3] 3R_13253043_SNP [dm6]	C	T	3.147e^-4	0.931	INTRON Ace
2L	3765286	2L_3765286_SNP [dm3] 2L_3765286_SNP [dm6]	A	G	3.153e^-4	0.931	SYNONYMOUS_CODING CG43707 UPSTREAM CG43703
3R	12756170	3R_12756170_SNP [dm3] 3R_16930448_SNP [dm6]	C	T	3.156e^-4	0.931	INTRON Abd-B
2L	13666405	2L_13666405_SNP [dm3] 2L_13666405_SNP [dm6]	G	A	3.157e^-4	0.931	INTRON CG18507	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7721993	2R_7721993_SNP [dm3] 2R_11834488_SNP [dm6]	C	T	3.159e^-4	0.931	INTRON Sobp
3R	26568830	3R_26568830_SNP [dm3] 3R_30743108_SNP [dm6]	C	T	3.167e^-4	0.931	SYNONYMOUS_CODING CG15543
3R	26568865	3R_26568865_SNP [dm3] 3R_30743143_SNP [dm6]	C	G	3.167e^-4	0.931	NON_SYNONYMOUS_CODING CG15543
3L	10702470	3L_10702470_SNP [dm3] 3L_10709370_SNP [dm6]	T	A	3.180e^-4	0.931	INTERGENIC
X	18184787	X_18184787_SNP [dm3] X_18290754_SNP [dm6]	A	T	3.181e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19844878	3R_19844878_SNP [dm3] 3R_24019156_SNP [dm6]	G	T	3.181e^-4	0.931	INTRON KrT95D
2R	8144311	2R_8144311_SNP [dm3] 2R_12256806_SNP [dm6]	A	T	3.189e^-4	0.931	UPSTREAM Vha36-2 INTERGENIC
2L	8813342	2L_8813342_SNP [dm3] 2L_8813342_SNP [dm6]	C	A	3.192e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	8820321	2L_8820321_SNP [dm3] 2L_8820321_SNP [dm6]	T	A	3.199e^-4	0.931	INTERGENIC
X	9265636	X_9265636_SNP [dm3] X_9371603_SNP [dm6]	T	A	3.200e^-4	0.931	INTRON mgl	TF binding site mE1_TFBS_sens
3L	18190087	3L_18190087_SNP [dm3] 3L_18196987_SNP [dm6]	T	C	3.201e^-4	0.931	DOWNSTREAM CR45234 INTERGENIC
X	1245137	X_1245137_SNP [dm3] X_1351104_SNP [dm6]	G	A	3.210e^-4	0.931	SPLICE_SITE_REGION CG12773 SYNONYMOUS_CODING CG12773
X	8182200	X_8182200_SNP [dm3] X_8288167_SNP [dm6]	G	A	3.211e^-4	0.931	INTRON nAChRalpha3
3R	21123835	3R_21123835_SNP [dm3] 3R_25298113_SNP [dm6]	C	T	3.214e^-4	0.931	SYNONYMOUS_CODING CG31288 UPSTREAM CG31097	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19053302	2L_19053302_SNP [dm3] 2L_19053302_SNP [dm6]	G	A	3.216e^-4	0.931	SYNONYMOUS_CODING Rpn3 UPSTREAM CG10492	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17055504	2L_17055504_SNP [dm3] 2L_17055504_SNP [dm6]	A	T	3.224e^-4	0.931	INTERGENIC
2L	4313612	2L_4313612_SNP [dm3] 2L_4313612_SNP [dm6]	A	G	3.232e^-4	0.931	INTRON tutl
2R	12373161	2R_12373161_SNP [dm3] 2R_16485656_SNP [dm6]	A	C	3.241e^-4	0.931	UPSTREAM CG15712 INTERGENIC
X	10880382	X_10880382_SNP [dm3] X_10986349_SNP [dm6]	C	A	3.247e^-4	0.931	INTRON CG42339
3R	19182263	3R_19182263_SNP [dm3] 3R_23356541_SNP [dm6]	A	G	3.252e^-4	0.931	UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	10354580	X_10354580_SNP [dm3] X_10460547_SNP [dm6]	A	T	3.252e^-4	0.931	UPSTREAM Or9a & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8101975	2R_8101975_SNP [dm3] 2R_12214470_SNP [dm6]	G	A	3.253e^-4	0.931	DOWNSTREAM CG13171 INTERGENIC
2L	6403299	2L_6403299_SNP [dm3] 2L_6403299_SNP [dm6]	A	T	3.262e^-4	0.931	INTRON CG42368	TF binding site mE1_TFBS_chinmo
2R	16406778	2R_16406778_SNP [dm3] 2R_20519273_SNP [dm6]	G	A	3.267e^-4	0.931	INTERGENIC
3L	11798881	3L_11798881_DEL [dm3] 3L_11805781_DEL [dm6]	AG	A	3.274e^-4	0.931	INTRON CG42255
2R	17138930	2R_17138930_SNP [dm3] 2R_21251425_SNP [dm6]	T	C	3.276e^-4	0.931	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	7588376	3R_7588376_SNP [dm3] 3R_11762654_SNP [dm6]	A	T	3.296e^-4	0.931	INTRON Lk6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	16919869	2R_16919869_SNP [dm3] 2R_21032364_SNP [dm6]	T	G	3.304e^-4	0.931	INTERGENIC
3R	24033638	3R_24033638_SNP [dm3] 3R_28207916_SNP [dm6]	C	T	3.305e^-4	0.931	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12706610	3R_12706610_SNP [dm3] 3R_16880888_SNP [dm6]	C	G	3.308e^-4	0.931	INTRON iab-8
3R	21074455	3R_21074455_SNP [dm3] 3R_25248733_SNP [dm6]	C	T	3.321e^-4	0.931	SYNONYMOUS_CODING Nup37 UPSTREAM Nup358	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	2270223	3L_2270223_SNP [dm3] 3L_2270223_SNP [dm6]	G	A	3.321e^-4	0.931	SYNONYMOUS_CODING yellow-g DOWNSTREAM CG32302	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	10565925	X_10565925_SNP [dm3] X_10671892_SNP [dm6]	T	A	3.324e^-4	0.931	DOWNSTREAM CG12637 INTRON X11Lbeta
3L	5570911	3L_5570911_SNP [dm3] 3L_5577811_SNP [dm6]	G	A	3.324e^-4	0.931	UPSTREAM Msr-110 INTERGENIC
2R	8092831	2R_8092831_SNP [dm3] 2R_12205326_SNP [dm6]	G	A	3.331e^-4	0.931	UPSTREAM CR45276 INTERGENIC
3L	21208410	3L_21208410_SNP [dm3] 3L_21215310_SNP [dm6]	C	T	3.339e^-4	0.931	UTR_3_PRIME CG10508 DOWNSTREAM CG12975 INTRON CG10508
3R	26572788	3R_26572788_SNP [dm3] 3R_30747066_SNP [dm6]	C	T	3.339e^-4	0.931	UPSTREAM Npc2h EXON CR43238
2L	9873052	2L_9873052_SNP [dm3] 2L_9873052_SNP [dm6]	C	A	3.340e^-4	0.931	INTRON nAChRalpha6
2R	8637786	2R_8637786_SNP [dm3] 2R_12750281_SNP [dm6]	G	T	3.358e^-4	0.931	SPLICE_SITE_REGION CG42663 INTRON CG42663	TF binding site mE1_TFBS_cad
3R	26567889	3R_26567889_SNP [dm3] 3R_30742167_SNP [dm6]	G	A	3.363e^-4	0.931	UPSTREAM CG15543 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	10336446	X_10336446_SNP [dm3] X_10442413_SNP [dm6]	G	A	3.365e^-4	0.931	INTRON CG32683
X	15324199	X_15324199_SNP [dm3] X_15430166_SNP [dm6]	A	G	3.369e^-4	0.931	INTRON Cngl
2R	10842356	2R_10842356_SNP [dm3] 2R_14954851_SNP [dm6]	C	G	3.371e^-4	0.931	INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10842360	2R_10842360_SNP [dm3] 2R_14954855_SNP [dm6]	A	C	3.371e^-4	0.931	INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26571827	3R_26571827_SNP [dm3] 3R_30746105_SNP [dm6]	A	G	3.375e^-4	0.931	SYNONYMOUS_CODING Npc2h UPSTREAM Npc2g DOWNSTREAM CR43238	TF binding site mE1_TFBS_cad
2R	11904773	2R_11904773_SNP [dm3] 2R_16017268_SNP [dm6]	T	C	3.377e^-4	0.931	UPSTREAM CG8399 & 1 other INTERGENIC
2R	11904778	2R_11904778_SNP [dm3] 2R_16017273_SNP [dm6]	C	A	3.377e^-4	0.931	UPSTREAM CG8399 & 1 other INTERGENIC
2R	11904782	2R_11904782_MNP [dm3] 2R_16017277_MNP [dm6]	CCT	TAC	3.377e^-4	0.931	UPSTREAM CG8399 & 1 other INTERGENIC
2R	12366694	2R_12366694_SNP [dm3] 2R_16479189_SNP [dm6]	G	A	3.378e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	812407	3L_812407_SNP [dm3] 3L_812407_SNP [dm6]	C	T	3.387e^-4	0.931	UPSTREAM CR44537 INTERGENIC
3L	812554	3L_812554_SNP [dm3] 3L_812554_SNP [dm6]	A	G	3.387e^-4	0.931	UPSTREAM CR44537 INTERGENIC
3L	812846	3L_812846_SNP [dm3] 3L_812846_SNP [dm6]	C	T	3.387e^-4	0.931	UPSTREAM CR44537 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	812859	3L_812859_SNP [dm3] 3L_812859_SNP [dm6]	T	C	3.387e^-4	0.931	UPSTREAM CR44537 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	813086	3L_813086_SNP [dm3] 3L_813086_SNP [dm6]	C	T	3.387e^-4	0.931	UPSTREAM CR44537 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14934594	2R_14934594_SNP [dm3] 2R_19047089_SNP [dm6]	A	G	3.393e^-4	0.931	INTERGENIC
2R	14669942	2R_14669942_SNP [dm3] 2R_18782437_SNP [dm6]	A	G	3.398e^-4	0.931	UPSTREAM CG15080 INTERGENIC
2R	20159700	2R_20159700_INS [dm3] 2R_24272177_INS [dm6]	A	AT	3.404e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	947397	X_947397_SNP [dm3] X_1053364_SNP [dm6]	C	A	3.407e^-4	0.931	DOWNSTREAM CG14629 INTRON CR44779
2R	16541207	2R_16541207_SNP [dm3] 2R_20653702_SNP [dm6]	C	A	3.410e^-4	0.931	INTRON Lrt & 1 other
3R	25399774	3R_25399774_SNP [dm3] 3R_29574052_SNP [dm6]	T	C	3.416e^-4	0.931	INTERGENIC
2R	11904766	2R_11904766_SNP [dm3] 2R_16017261_SNP [dm6]	G	T	3.419e^-4	0.931	UPSTREAM CG8399 & 1 other INTERGENIC
2R	18015967	2R_18015967_SNP [dm3] 2R_22128462_SNP [dm6]	T	C	3.428e^-4	0.931	UPSTREAM GM130 INTRON NtR	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	26569535	3R_26569535_SNP [dm3] 3R_30743813_SNP [dm6]	C	T	3.429e^-4	0.931	SYNONYMOUS_CODING CG15543 DOWNSTREAM Npc2g
3L	10875073	3L_10875073_SNP [dm3] 3L_10881973_SNP [dm6]	G	A	3.432e^-4	0.931	UPSTREAM CG7949 INTRON CG6409
3L	16549927	3L_16549927_SNP [dm3] 3L_16556827_SNP [dm6]	C	T	3.433e^-4	0.931	UTR_5_PRIME CG4229	TF binding site mE1_TFBS_cad
3R	10055165	3R_10055165_SNP [dm3] 3R_14229443_SNP [dm6]	G	A	3.434e^-4	0.931	UPSTREAM CG9624 INTERGENIC
3L	14601792	3L_14601792_SNP [dm3] 3L_14608692_SNP [dm6]	A	T	3.444e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	3948528	2R_3948528_DEL [dm3] 2R_8061023_DEL [dm6]	AA	A	3.454e^-4	0.931	INTRON CG12769	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	20672391	3L_20672391_SNP [dm3] 3L_20679291_SNP [dm6]	G	C	3.455e^-4	0.931	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13285663	3L_13285663_SNP [dm3] 3L_13292563_SNP [dm6]	C	T	3.460e^-4	0.931	UPSTREAM CR43912 INTERGENIC
2R	10862254	2R_10862254_SNP [dm3] 2R_14974749_SNP [dm6]	G	A	3.466e^-4	0.931	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna
3R	7131214	3R_7131214_INS [dm3] 3R_11305492_INS [dm6]	T	TT	3.471e^-4	0.931	INTRON CR31386	TF binding site BDTNP1_TFBS_twi
2L	6266890	2L_6266890_SNP [dm3] 2L_6266890_SNP [dm6]	A	T	3.475e^-4	0.931	INTRON Ddr
X	12199100	X_12199100_DEL [dm3] X_12305067_DEL [dm6]	AC	A	3.484e^-4	0.931	INTRON Ten-a
3L	17684128	3L_17684128_SNP [dm3] 3L_17691028_SNP [dm6]	A	T	3.485e^-4	0.931	INTRON Ccn
2L	9929641	2L_9929641_SNP [dm3] 2L_9929641_SNP [dm6]	G	A	3.488e^-4	0.931	UPSTREAM CG42367 INTRON CG42366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19903517	X_19903517_SNP [dm3] X_20009484_SNP [dm6]	C	G	3.497e^-4	0.931	INTRON Dop2R
X	18180210	X_18180210_INS [dm3] X_18286177_INS [dm6]	T	TT	3.500e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8092786	2R_8092786_SNP [dm3] 2R_12205281_SNP [dm6]	C	T	3.501e^-4	0.931	UPSTREAM CR45276 INTERGENIC
2R	10852286	2R_10852286_SNP [dm3] 2R_14964781_SNP [dm6]	C	G	3.506e^-4	0.931	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	15770935	2R_15770935_SNP [dm3] 2R_19883430_SNP [dm6]	A	G	3.522e^-4	0.931	INTERGENIC
2L	16944181	2L_16944181_SNP [dm3] 2L_16944181_SNP [dm6]	G	A	3.531e^-4	0.931	DOWNSTREAM CR43053 INTERGENIC
2R	15940134	2R_15940134_SNP [dm3] 2R_20052629_SNP [dm6]	A	T	3.538e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1615697	3L_1615697_SNP [dm3] 3L_1615697_SNP [dm6]	C	T	3.539e^-4	0.931	START_GAINED CG12105 UTR_5_PRIME CG12105 INTRON CG33791 & 1 other
2R	15297852	2R_15297852_SNP [dm3] 2R_19410347_SNP [dm6]	T	C	3.541e^-4	0.931	SYNONYMOUS_CODING hts	TF binding site BDTNP1_TFBS_dl
3R	1959317	3R_1959317_INS [dm3] 3R_6133595_INS [dm6]	A	AATCAA	3.542e^-4	0.931	INTERGENIC
3R	2990080	3R_2990080_SNP [dm3] 3R_7164358_SNP [dm6]	A	C	3.548e^-4	0.931	SPLICE_SITE_REGION sas UTR_5_PRIME sas INTRON sas
3L	15055217	3L_15055217_SNP [dm3] 3L_15062117_SNP [dm6]	G	A	3.549e^-4	0.931	UPSTREAM CG13460 DOWNSTREAM CR43684 INTRON Sytbeta
3L	13284281	3L_13284281_SNP [dm3] 3L_13291181_SNP [dm6]	G	T	3.550e^-4	0.931	DOWNSTREAM CR43912 EXON CR43912
2R	11633467	2R_11633467_SNP [dm3] 2R_15745962_SNP [dm6]	A	G	3.555e^-4	0.931	INTRON CG30089	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26568615	3R_26568615_SNP [dm3] 3R_30742893_SNP [dm6]	C	A	3.556e^-4	0.931	UTR_5_PRIME CG15543
3L	15423051	3L_15423051_SNP [dm3] 3L_15429951_SNP [dm6]	C	A	3.557e^-4	0.931	INTERGENIC
X	17299248	X_17299248_SNP [dm3] X_17405215_SNP [dm6]	C	T	3.557e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16698541	2L_16698541_SNP [dm3] 2L_16698541_SNP [dm6]	G	A	3.560e^-4	0.931	UPSTREAM mir-79 & 2 others DOWNSTREAM mir-9c & 1 other INTRON grp
X	13630079	X_13630079_SNP [dm3] X_13736046_SNP [dm6]	C	T	3.560e^-4	0.931	UTR_5_PRIME g UPSTREAM g DOWNSTREAM Grip91	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	15134537	2L_15134537_SNP [dm3] 2L_15134537_SNP [dm6]	T	C	3.560e^-4	0.931	INTERGENIC
3R	21073303	3R_21073303_SNP [dm3] 3R_25247581_SNP [dm6]	T	C	3.561e^-4	0.931	UPSTREAM Nup37 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21073840	3R_21073840_SNP [dm3] 3R_25248118_SNP [dm6]	T	G	3.564e^-4	0.931	UPSTREAM RpS27 INTRON Nup37	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	12290780	2R_12290780_SNP [dm3] 2R_16403275_SNP [dm6]	A	C	3.569e^-4	0.931	INTRON Sema-2b
3L	15839937	3L_15839937_SNP [dm3] 3L_15846837_SNP [dm6]	C	A	3.570e^-4	0.931	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12111937	3L_12111937_SNP [dm3] 3L_12118837_SNP [dm6]	G	C	3.573e^-4	0.931	SYNONYMOUS_CODING ssp DOWNSTREAM l_3_j2D3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1449022	3L_1449022_SNP [dm3] 3L_1449022_SNP [dm6]	G	A	3.582e^-4	0.931	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc
3R	11022283	3R_11022283_SNP [dm3] 3R_15196561_SNP [dm6]	T	G	3.587e^-4	0.931	UPSTREAM CG42542 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_Ubx
3R	2562405	3R_2562405_SNP [dm3] 3R_6736683_SNP [dm6]	A	T	3.587e^-4	0.931	INTRON pb	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	4093952	3L_4093952_SNP [dm3] 3L_4093952_SNP [dm6]	C	T	3.587e^-4	0.931	SYNONYMOUS_CODING CG14990 DOWNSTREAM CG14995	TF binding site mE1_TFBS_cad
2R	15439626	2R_15439626_SNP [dm3] 2R_19552121_SNP [dm6]	T	C	3.589e^-4	0.931	INTRON sm & 1 other
2L	4355550	2L_4355550_SNP [dm3] 2L_4355550_SNP [dm6]	A	C	3.589e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14686251	3L_14686251_SNP [dm3] 3L_14693151_SNP [dm6]	T	C	3.590e^-4	0.931	INTRON ome
2L	19059100	2L_19059100_INS [dm3] 2L_19059100_INS [dm6]	A	AA	3.591e^-4	0.931	UPSTREAM Phlpp DOWNSTREAM CG10492 INTERGENIC
3R	9755101	3R_9755101_SNP [dm3] 3R_13929379_SNP [dm6]	G	C	3.600e^-4	0.931	INTERGENIC
2L	6636977	2L_6636977_SNP [dm3] 2L_6636977_SNP [dm6]	A	T	3.604e^-4	0.931	SYNONYMOUS_CODING CG31635	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	12366823	2R_12366823_SNP [dm3] 2R_16479318_SNP [dm6]	G	A	3.606e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10880387	X_10880387_SNP [dm3] X_10986354_SNP [dm6]	A	C	3.606e^-4	0.931	INTRON CG42339
X	13029933	X_13029933_SNP [dm3] X_13135900_SNP [dm6]	G	T	3.609e^-4	0.931	INTERGENIC
3L	13282912	3L_13282912_SNP [dm3] 3L_13289812_SNP [dm6]	C	T	3.617e^-4	0.931	DOWNSTREAM CR43912 INTERGENIC
X	2430418	X_2430418_SNP [dm3] X_2536385_SNP [dm6]	T	C	3.619e^-4	0.931	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	4416355	2L_4416355_SNP [dm3] 2L_4416355_SNP [dm6]	C	G	3.631e^-4	0.931	INTRON CG15431
X	10565943	X_10565943_SNP [dm3] X_10671910_SNP [dm6]	G	A	3.632e^-4	0.931	DOWNSTREAM CG12637 INTRON X11Lbeta
2L	10234368	2L_10234368_SNP [dm3] 2L_10234368_SNP [dm6]	A	T	3.636e^-4	0.931	UTR_3_PRIME eEF1delta DOWNSTREAM mthl15
3R	21072864	3R_21072864_SNP [dm3] 3R_25247142_SNP [dm6]	T	A	3.644e^-4	0.931	UPSTREAM Nup37 INTRON RpS27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
3R	21073735	3R_21073735_SNP [dm3] 3R_25248013_SNP [dm6]	C	A	3.644e^-4	0.931	SYNONYMOUS_CODING Nup37 UPSTREAM RpS27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21075864	3R_21075864_SNP [dm3] 3R_25250142_SNP [dm6]	T	A	3.644e^-4	0.931	INTRON Nup358	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	21077604	3R_21077604_SNP [dm3] 3R_25251882_SNP [dm6]	C	A	3.644e^-4	0.931	SYNONYMOUS_CODING Nup358	TF binding site mE1_TFBS_sens
3R	21079789	3R_21079789_SNP [dm3] 3R_25254067_SNP [dm6]	G	T	3.644e^-4	0.931	SYNONYMOUS_CODING Nup358
2L	8217577	2L_8217577_SNP [dm3] 2L_8217577_SNP [dm6]	T	C	3.645e^-4	0.931	SYNONYMOUS_CODING CG8292 DOWNSTREAM CG8349 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11276747	3L_11276747_SNP [dm3] 3L_11283647_SNP [dm6]	C	T	3.650e^-4	0.931	INTERGENIC
X	3354427	X_3354427_SNP [dm3] X_3460394_SNP [dm6]	A	T	3.653e^-4	0.931	UPSTREAM CG10801 & 1 other INTRON CR44999
2R	17102935	2R_17102935_SNP [dm3] 2R_21215430_SNP [dm6]	C	T	3.654e^-4	0.931	UPSTREAM CG4302 DOWNSTREAM CG15661 INTERGENIC
X	12795657	X_12795657_SNP [dm3] X_12901624_SNP [dm6]	G	A	3.657e^-4	0.931	SYNONYMOUS_CODING CG4407 UPSTREAM CG32649	TF binding site mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	1242175	3L_1242175_SNP [dm3] 3L_1242175_SNP [dm6]	T	C	3.684e^-4	0.931	SYNONYMOUS_CODING Klp61F DOWNSTREAM CG9194
3L	18190090	3L_18190090_SNP [dm3] 3L_18196990_SNP [dm6]	G	A	3.684e^-4	0.931	DOWNSTREAM CR45234 INTERGENIC
2L	9672035	2L_9672035_SNP [dm3] 2L_9672035_SNP [dm6]	T	G	3.686e^-4	0.931	UPSTREAM CR44150 INTERGENIC
2L	12566647	2L_12566647_SNP [dm3] 2L_12566647_SNP [dm6]	A	G	3.686e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10539510	2L_10539510_SNP [dm3] 2L_10539510_SNP [dm6]	C	A	3.704e^-4	0.931	INTERGENIC
2R	8092783	2R_8092783_SNP [dm3] 2R_12205278_SNP [dm6]	G	T	3.710e^-4	0.931	UPSTREAM CR45276 INTERGENIC
3R	22376081	3R_22376081_SNP [dm3] 3R_26550359_SNP [dm6]	A	T	3.717e^-4	0.931	INTRON scrib	TF binding site BDTNP1_TFBS_twi
2L	3771413	2L_3771413_SNP [dm3] 2L_3771413_SNP [dm6]	C	A	3.724e^-4	0.931	UPSTREAM CR43704 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8096106	2R_8096106_SNP [dm3] 2R_12208601_SNP [dm6]	A	G	3.725e^-4	0.931	DOWNSTREAM Sr-CII INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10096989	3L_10096989_SNP [dm3] 3L_10103889_SNP [dm6]	T	A	3.731e^-4	0.931	INTRON dpr6
3R	26572883	3R_26572883_SNP [dm3] 3R_30747161_SNP [dm6]	A	T	3.735e^-4	0.931	UPSTREAM Npc2h EXON CR43238
2L	5373432	2L_5373432_DEL [dm3] 2L_5373432_DEL [dm6]	AA	A	3.745e^-4	0.931	INTERGENIC
2L	13702977	2L_13702977_SNP [dm3] 2L_13702977_SNP [dm6]	T	C	3.747e^-4	0.931	INTRON CG31814
2R	17138936	2R_17138936_SNP [dm3] 2R_21251431_SNP [dm6]	A	C	3.749e^-4	0.931	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	2866155	2L_2866155_SNP [dm3] 2L_2866155_SNP [dm6]	G	A	3.750e^-4	0.931	INTRON CG2991
2R	17623680	2R_17623680_SNP [dm3] 2R_21736175_SNP [dm6]	C	G	3.758e^-4	0.931	INTERGENIC
2L	15134491	2L_15134491_SNP [dm3] 2L_15134491_SNP [dm6]	T	C	3.762e^-4	0.931	INTERGENIC
3R	22482968	3R_22482968_SNP [dm3] 3R_26657246_SNP [dm6]	G	A	3.768e^-4	0.931	SYNONYMOUS_CODING Tb INTRON beat-VII	TF binding site mE1_TFBS_chinmo
2R	10713222	2R_10713222_SNP [dm3] 2R_14825717_SNP [dm6]	A	T	3.768e^-4	0.931	INTERGENIC
2L	7998643	2L_7998643_SNP [dm3] 2L_7998643_SNP [dm6]	C	T	3.769e^-4	0.931	UPSTREAM CG7227 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	15559644	3R_15559644_SNP [dm3] 3R_19733922_SNP [dm6]	A	C	3.772e^-4	0.931	INTRON GluClalpha
2L	3044620	2L_3044620_SNP [dm3] 2L_3044620_SNP [dm6]	A	C	3.772e^-4	0.931	INTRON v_2_k05816
3R	16817160	3R_16817160_SNP [dm3] 3R_20991438_SNP [dm6]	G	C	3.773e^-4	0.931	INTRON Calx
2R	9146167	2R_9146167_SNP [dm3] 2R_13258662_SNP [dm6]	T	A	3.774e^-4	0.931	DOWNSTREAM CG10799 INTERGENIC
2R	1771728	2R_1771728_SNP [dm3] 2R_5884223_SNP [dm6]	T	C	3.780e^-4	0.931	UPSTREAM CR44125 INTERGENIC
2L	16591765	2L_16591765_SNP [dm3] 2L_16591765_SNP [dm6]	A	T	3.784e^-4	0.931	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5584716	3L_5584716_SNP [dm3] 3L_5591616_SNP [dm6]	G	T	3.784e^-4	0.931	SYNONYMOUS_CODING spo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6443358	X_6443358_SNP [dm3] X_6549325_SNP [dm6]	C	G	3.786e^-4	0.931	INTRON CG34417	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	21107544	3R_21107544_SNP [dm3] 3R_25281822_SNP [dm6]	A	G	3.786e^-4	0.931	SYNONYMOUS_CODING CG11892	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6857013	3L_6857013_SNP [dm3] 3L_6863913_SNP [dm6]	G	A	3.803e^-4	0.931	INTERGENIC
3R	26581415	3R_26581415_SNP [dm3] 3R_30755693_SNP [dm6]	T	C	3.814e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11722589	3R_11722589_SNP [dm3] 3R_15896867_SNP [dm6]	A	G	3.824e^-4	0.931	UPSTREAM CG14877 DOWNSTREAM glob1 INTERGENIC
2L	4355549	2L_4355549_SNP [dm3] 2L_4355549_SNP [dm6]	C	A	3.843e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8082493	2R_8082493_SNP [dm3] 2R_12194988_SNP [dm6]	T	A	3.856e^-4	0.931	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
2R	8087114	2R_8087114_SNP [dm3] 2R_12199609_SNP [dm6]	A	G	3.856e^-4	0.931	UPSTREAM CG8858 & 1 other DOWNSTREAM snoRNA:Me28S-C3420a INTRON RpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	10172520	2L_10172520_DEL [dm3] 2L_10172520_DEL [dm6]	AGA	A	3.858e^-4	0.931	UPSTREAM CG13137 INTRON CG44153
3R	13928322	3R_13928322_INS [dm3] 3R_18102600_INS [dm6]	T	TT	3.868e^-4	0.931	INTRON sr
X	15004854	X_15004854_SNP [dm3] X_15110821_SNP [dm6]	G	T	3.875e^-4	0.931	DOWNSTREAM Rab3-GEF INTRON Rab3-GEF
2L	4355454	2L_4355454_SNP [dm3] 2L_4355454_SNP [dm6]	G	C	3.881e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	11904550	2R_11904550_SNP [dm3] 2R_16017045_SNP [dm6]	A	G	3.881e^-4	0.931	SYNONYMOUS_CODING CG8397 UPSTREAM CG8399 DOWNSTREAM Rrp42
2R	11904641	2R_11904641_SNP [dm3] 2R_16017136_SNP [dm6]	G	A	3.881e^-4	0.931	UTR_5_PRIME CG8397 UPSTREAM CG8399
2R	8093736	2R_8093736_SNP [dm3] 2R_12206231_SNP [dm6]	G	T	3.884e^-4	0.931	EXON CR45276	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	13351573	2R_13351573_SNP [dm3] 2R_17464068_SNP [dm6]	G	A	3.893e^-4	0.931	SYNONYMOUS_CODING CG14478	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	1435982	3L_1435982_SNP [dm3] 3L_1435982_SNP [dm6]	G	C	3.900e^-4	0.931	NON_SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9266424	2R_9266424_SNP [dm3] 2R_13378919_SNP [dm6]	A	T	3.908e^-4	0.931	INTERGENIC
X	4841614	X_4841614_SNP [dm3] X_4947581_SNP [dm6]	G	T	3.910e^-4	0.931	INTRON Ptp4E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23057541	3R_23057541_SNP [dm3] 3R_27231819_SNP [dm6]	T	C	3.913e^-4	0.931	SYNONYMOUS_CODING CG31064 INTRON CG31064
X	10041854	X_10041854_INS [dm3] X_10147821_INS [dm6]	AG	CACCC	3.915e^-4	0.931	INTRON CR44894 & 1 other
3L	15934189	3L_15934189_SNP [dm3] 3L_15941089_SNP [dm6]	C	A	3.924e^-4	0.931	INTRON Pka-C3
2L	8444706	2L_8444706_SNP [dm3] 2L_8444706_SNP [dm6]	T	C	3.925e^-4	0.931	SYNONYMOUS_CODING CG31897
2L	13694812	2L_13694812_SNP [dm3] 2L_13694812_SNP [dm6]	C	G	3.942e^-4	0.931	INTRON CG31814
2L	4301354	2L_4301354_SNP [dm3] 2L_4301354_SNP [dm6]	T	A	3.955e^-4	0.931	INTRON tutl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9830249	3R_9830249_SNP [dm3] 3R_14004527_SNP [dm6]	A	T	3.958e^-4	0.931	INTRON rdx
3R	15230260	3R_15230260_SNP [dm3] 3R_19404538_SNP [dm6]	A	T	3.961e^-4	0.931	NON_SYNONYMOUS_CODING CG5316 UTR_3_PRIME CG5316	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7486823	3L_7486823_SNP [dm3] 3L_7493723_SNP [dm6]	T	C	3.962e^-4	0.931	SYNONYMOUS_CODING Cyp4d8 DOWNSTREAM Cyp316a1
2R	8101969	2R_8101969_INS [dm3] 2R_12214464_INS [dm6]	A	ATGTA	3.967e^-4	0.931	DOWNSTREAM CG13171 INTERGENIC
X	13029900	X_13029900_SNP [dm3] X_13135867_SNP [dm6]	C	A	3.977e^-4	0.931	INTERGENIC
2L	3052514	2L_3052514_SNP [dm3] 2L_3052514_SNP [dm6]	C	A	3.977e^-4	0.931	SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_chinmo
X	13198403	X_13198403_DEL [dm3] X_13304370_DEL [dm6]	CGGCCGCCCGCCC...	C	3.984e^-4	0.931	UPSTREAM CR45018 INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2796690	2L_2796690_SNP [dm3] 2L_2796690_SNP [dm6]	T	A	3.991e^-4	0.931	INTRON Syt1
2R	14926907	2R_14926907_SNP [dm3] 2R_19039402_SNP [dm6]	C	T	3.995e^-4	0.931	INTERGENIC
3R	24197713	3R_24197713_SNP [dm3] 3R_28371991_SNP [dm6]	C	G	4.002e^-4	0.931	INTERGENIC
2L	5651991	2L_5651991_SNP [dm3] 2L_5651991_SNP [dm6]	G	A	4.003e^-4	0.931	UTR_5_PRIME CG31646
3R	22635832	3R_22635832_SNP [dm3] 3R_26810110_SNP [dm6]	A	G	4.005e^-4	0.931	INTRON Tl
3L	11857702	3L_11857702_SNP [dm3] 3L_11864602_SNP [dm6]	T	C	4.005e^-4	0.931	INTRON CG44837
2R	10407370	2R_10407370_SNP [dm3] 2R_14519865_SNP [dm6]	A	T	4.013e^-4	0.931	INTERGENIC
2R	8092784	2R_8092784_INS [dm3] 2R_12205279_INS [dm6]	A	AT	4.027e^-4	0.931	UPSTREAM CR45276 INTERGENIC
2L	4428044	2L_4428044_SNP [dm3] 2L_4428044_SNP [dm6]	T	A	4.030e^-4	0.931	INTRON CG15431
3R	18420183	3R_18420183_SNP [dm3] 3R_22594461_SNP [dm6]	T	G	4.034e^-4	0.931	INTRON Efa6
3L	11849076	3L_11849076_SNP [dm3] 3L_11855976_SNP [dm6]	C	G	4.034e^-4	0.931	INTRON CG44837
3L	11849127	3L_11849127_SNP [dm3] 3L_11856027_SNP [dm6]	A	G	4.034e^-4	0.931	INTRON CG44837
2L	3049535	2L_3049535_SNP [dm3] 2L_3049535_SNP [dm6]	A	G	4.037e^-4	0.931	SYNONYMOUS_CODING v_2_k05816 DOWNSTREAM snRNA:U5:23D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22168264	3R_22168264_SNP [dm3] 3R_26342542_SNP [dm6]	A	T	4.041e^-4	0.931	INTRON CG33970
X	4538367	X_4538367_SNP [dm3] X_4644334_SNP [dm6]	A	C	4.044e^-4	0.931	UPSTREAM CG3081 DOWNSTREAM HLH4C INTRON CG3062
2R	12373163	2R_12373163_SNP [dm3] 2R_16485658_SNP [dm6]	T	A	4.046e^-4	0.931	UPSTREAM CG15712 INTERGENIC
2R	10896346	2R_10896346_DEL [dm3] 2R_15008841_DEL [dm6]	AA	A	4.060e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10576572	2R_10576572_SNP [dm3] 2R_14689067_SNP [dm6]	A	G	4.061e^-4	0.931	INTRON mspo
2L	5502500	2L_5502500_SNP [dm3] 2L_5502500_SNP [dm6]	C	G	4.072e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_cad
2R	11904567	2R_11904567_SNP [dm3] 2R_16017062_SNP [dm6]	G	T	4.078e^-4	0.931	NON_SYNONYMOUS_CODING CG8397 UPSTREAM CG8399
2L	3764553	2L_3764553_SNP [dm3] 2L_3764553_SNP [dm6]	C	G	4.081e^-4	0.931	SYNONYMOUS_CODING CG43707 UPSTREAM CG43703	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14879690	2R_14879690_SNP [dm3] 2R_18992185_SNP [dm6]	C	T	4.083e^-4	0.931	INTRON tn
2R	13350223	2R_13350223_SNP [dm3] 2R_17462718_SNP [dm6]	C	G	4.087e^-4	0.931	SYNONYMOUS_CODING CG14478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8820336	2L_8820336_INS [dm3] 2L_8820336_INS [dm6]	C	GAAATT	4.089e^-4	0.931	INTERGENIC
3R	2228035	3R_2228035_SNP [dm3] 3R_6402313_SNP [dm6]	T	C	4.096e^-4	0.931	INTRON Dmtn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8061873	2R_8061873_SNP [dm3] 2R_12174368_SNP [dm6]	T	G	4.101e^-4	0.931	UPSTREAM Cct5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	9872982	2L_9872982_SNP [dm3] 2L_9872982_SNP [dm6]	T	G	4.108e^-4	0.931	INTRON nAChRalpha6
3R	19861896	3R_19861896_SNP [dm3] 3R_24036174_SNP [dm6]	G	A	4.114e^-4	0.931	SYNONYMOUS_CODING Miro	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10891058	2R_10891058_SNP [dm3] 2R_15003553_SNP [dm6]	T	G	4.115e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10919392	2R_10919392_SNP [dm3] 2R_15031887_SNP [dm6]	G	C	4.116e^-4	0.931	INTRON hbs	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	18990770	3R_18990770_SNP [dm3] 3R_23165048_SNP [dm6]	G	A	4.116e^-4	0.931	INTERGENIC
3L	20846301	3L_20846301_SNP [dm3] 3L_20853201_SNP [dm6]	T	G	4.137e^-4	0.931	INTRON CG32432
3R	20805941	3R_20805941_SNP [dm3] 3R_24980219_SNP [dm6]	G	A	4.138e^-4	0.931	INTERGENIC
2R	13170583	2R_13170583_SNP [dm3] 2R_17283078_SNP [dm6]	C	T	4.144e^-4	0.931	INTRON mbl
2R	9560226	2R_9560226_SNP [dm3] 2R_13672721_SNP [dm6]	A	G	4.148e^-4	0.931	UPSTREAM CR45031 INTRON fas
X	13029908	X_13029908_SNP [dm3] X_13135875_SNP [dm6]	A	T	4.151e^-4	0.931	INTERGENIC
3L	10104603	3L_10104603_SNP [dm3] 3L_10111503_SNP [dm6]	A	C	4.155e^-4	0.931	INTRON dpr6
2R	18546238	2R_18546238_SNP [dm3] 2R_22658733_SNP [dm6]	A	C	4.156e^-4	0.931	UPSTREAM CG13511 INTRON CG13510 & 2 others
2L	16827955	2L_16827955_SNP [dm3] 2L_16827955_SNP [dm6]	G	T	4.159e^-4	0.931	DOWNSTREAM mdy INTRON CG31739	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	22102543	3L_22102543_SNP [dm3] 3L_22109443_SNP [dm6]	T	G	4.165e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3962973	2L_3962973_SNP [dm3] 2L_3962973_SNP [dm6]	T	G	4.170e^-4	0.931	INTRON fred	TF binding site mE1_TFBS_bab1
3R	2975741	3R_2975741_SNP [dm3] 3R_7150019_SNP [dm6]	A	T	4.179e^-4	0.931	INTRON CG2656 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12419830	2L_12419830_SNP [dm3] 2L_12419830_SNP [dm6]	C	T	4.179e^-4	0.931	INTRON vir-1
3L	10897427	3L_10897427_SNP [dm3] 3L_10904327_SNP [dm6]	T	G	4.185e^-4	0.931	INTERGENIC
3L	13283546	3L_13283546_SNP [dm3] 3L_13290446_SNP [dm6]	T	C	4.185e^-4	0.931	DOWNSTREAM CR43912 INTERGENIC
2L	19074911	2L_19074911_SNP [dm3] 2L_19074911_SNP [dm6]	A	T	4.202e^-4	0.931	UPSTREAM CG17572 DOWNSTREAM CR33315 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10576575	2R_10576575_SNP [dm3] 2R_14689070_SNP [dm6]	G	C	4.209e^-4	0.931	INTRON mspo
2L	15134340	2L_15134340_INS [dm3] 2L_15134340_INS [dm6]	A	AA	4.225e^-4	0.931	INTERGENIC
2R	11904523	2R_11904523_SNP [dm3] 2R_16017018_SNP [dm6]	G	T	4.229e^-4	0.931	STOP_GAINED CG8397 UPSTREAM CG8399 DOWNSTREAM Rrp42	TF binding site mE1_TFBS_HSA
3L	10897685	3L_10897685_SNP [dm3] 3L_10904585_SNP [dm6]	C	T	4.248e^-4	0.931	INTERGENIC
X	9265627	X_9265627_DEL [dm3] X_9371594_DEL [dm6]	GATCGTA	G	4.256e^-4	0.931	INTRON mgl	TF binding site mE1_TFBS_sens
3L	20274536	3L_20274536_SNP [dm3] 3L_20281436_SNP [dm6]	C	T	4.263e^-4	0.931	INTRON gogo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3771573	2L_3771573_SNP [dm3] 2L_3771573_SNP [dm6]	C	G	4.264e^-4	0.931	UPSTREAM bowl INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26572888	3R_26572888_SNP [dm3] 3R_30747166_SNP [dm6]	G	A	4.267e^-4	0.931	UPSTREAM Npc2h EXON CR43238
X	10402595	X_10402595_SNP [dm3] X_10508562_SNP [dm6]	C	A	4.271e^-4	0.931	INTRON spri
2R	4098959	2R_4098959_DEL [dm3] 2R_8211454_DEL [dm6]	TC	T	4.271e^-4	0.931	INTRON LRP1	TF binding site mE1_TFBS_cad
3R	9775320	3R_9775320_SNP [dm3] 3R_13949598_SNP [dm6]	G	A	4.276e^-4	0.931	UTR_3_PRIME CG31517 DOWNSTREAM CG9926 & 1 other
2R	20878907	2R_20878907_SNP [dm3] 2R_24991384_SNP [dm6]	G	A	4.285e^-4	0.931	DOWNSTREAM CG3829 INTRON zip
2L	5654300	2L_5654300_SNP [dm3] 2L_5654300_SNP [dm6]	C	A	4.290e^-4	0.931	INTRON CG31646
2R	17138938	2R_17138938_SNP [dm3] 2R_21251433_SNP [dm6]	T	C	4.293e^-4	0.931	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	4773118	2L_4773118_SNP [dm3] 2L_4773118_SNP [dm6]	C	T	4.295e^-4	0.931	INTRON CG15630
2L	16575956	2L_16575956_SNP [dm3] 2L_16575956_SNP [dm6]	G	A	4.295e^-4	0.931	INTRON CG42389
X	13817436	X_13817436_SNP [dm3] X_13923403_SNP [dm6]	C	T	4.298e^-4	0.931	INTRON mamo
2L	4393067	2L_4393067_SNP [dm3] 2L_4393067_SNP [dm6]	G	T	4.310e^-4	0.931	SYNONYMOUS_CODING CG3652 DOWNSTREAM Tps1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	15710367	2R_15710367_DEL [dm3] 2R_19822862_DEL [dm6]	CC	C	4.310e^-4	0.931	INTERGENIC
X	17673222	X_17673222_SNP [dm3] X_17779189_SNP [dm6]	A	G	4.315e^-4	0.931	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	2270613	3L_2270613_SNP [dm3] 3L_2270613_SNP [dm6]	C	T	4.315e^-4	0.931	DOWNSTREAM CG32302 INTRON yellow-g	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	19715734	2L_19715734_SNP [dm3] 2L_19715734_SNP [dm6]	C	A	4.317e^-4	0.931	INTRON Lar
3L	5585958	3L_5585958_SNP [dm3] 3L_5592858_SNP [dm6]	G	T	4.317e^-4	0.931	NON_SYNONYMOUS_CODING CG10592 UPSTREAM spo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10019335	2L_10019335_SNP [dm3] 2L_10019335_SNP [dm6]	T	C	4.322e^-4	0.931	INTERGENIC
3L	11479975	3L_11479975_DEL [dm3] 3L_11486875_DEL [dm6]	GTTACG	C	4.329e^-4	0.931	UPSTREAM chrb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Trl
2L	4576926	2L_4576926_SNP [dm3] 2L_4576926_SNP [dm6]	G	C	4.337e^-4	0.931	DOWNSTREAM HP6 INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	19715673	2L_19715673_SNP [dm3] 2L_19715673_SNP [dm6]	C	T	4.359e^-4	0.931	INTRON Lar
2R	8101974	2R_8101974_SNP [dm3] 2R_12214469_SNP [dm6]	T	A	4.359e^-4	0.931	DOWNSTREAM CG13171 INTERGENIC
3R	9164247	3R_9164247_DEL [dm3] 3R_13338525_DEL [dm6]	CG	C	4.360e^-4	0.931	UTR_5_PRIME PK2-R1
3R	9028810	3R_9028810_SNP [dm3] 3R_13203088_SNP [dm6]	A	G	4.361e^-4	0.931	INTERGENIC
X	10880416	X_10880416_SNP [dm3] X_10986383_SNP [dm6]	A	T	4.363e^-4	0.931	INTRON CG42339
2R	10999874	2R_10999874_SNP [dm3] 2R_15112369_SNP [dm6]	T	G	4.370e^-4	0.931	INTERGENIC
X	10356035	X_10356035_SNP [dm3] X_10462002_SNP [dm6]	T	C	4.386e^-4	0.931	UTR_3_PRIME nocte DOWNSTREAM Neb-cGP	TF binding site BDTNP1_TFBS_dl
3R	10994818	3R_10994818_SNP [dm3] 3R_15169096_SNP [dm6]	C	T	4.386e^-4	0.931	INTRON Gyc88E
3L	11859378	3L_11859378_SNP [dm3] 3L_11866278_SNP [dm6]	A	G	4.386e^-4	0.931	INTRON CG44837
X	10354405	X_10354405_SNP [dm3] X_10460372_SNP [dm6]	C	G	4.400e^-4	0.931	UPSTREAM Or9a & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	2796807	2L_2796807_SNP [dm3] 2L_2796807_SNP [dm6]	A	G	4.408e^-4	0.931	INTRON Syt1
2L	4399553	2L_4399553_SNP [dm3] 2L_4399553_SNP [dm6]	C	T	4.409e^-4	0.931	SYNONYMOUS_CODING l_2_k05819
2L	16575955	2L_16575955_SNP [dm3] 2L_16575955_SNP [dm6]	A	G	4.410e^-4	0.931	INTRON CG42389
2R	15940137	2R_15940137_SNP [dm3] 2R_20052632_SNP [dm6]	A	T	4.412e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19190158	3R_19190158_DEL [dm3] 3R_23364436_DEL [dm6]	TTATA	T	4.413e^-4	0.931	UPSTREAM CG4408 INTERGENIC
3L	4560868	3L_4560868_INS [dm3] 3L_4560868_INS [dm6]	A	AA	4.430e^-4	0.931	INTRON CG42540
3L	1719544	3L_1719544_SNP [dm3] 3L_1719544_SNP [dm6]	C	A	4.432e^-4	0.931	SYNONYMOUS_CODING drpr INTRON drpr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20828861	3L_20828861_SNP [dm3] 3L_20835761_SNP [dm6]	A	T	4.444e^-4	0.931	UTR_3_PRIME Pka-R1 UPSTREAM CG3288 DOWNSTREAM CR45384 & 1 other
X	17673209	X_17673209_INS [dm3] X_17779176_INS [dm6]	T	TCGCCATAGAACT...	4.463e^-4	0.931	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	19071255	2L_19071255_SNP [dm3] 2L_19071255_SNP [dm6]	C	T	4.465e^-4	0.931	SYNONYMOUS_CODING CG17572
3L	10897680	3L_10897680_SNP [dm3] 3L_10904580_SNP [dm6]	C	G	4.466e^-4	0.931	INTERGENIC
3L	18190050	3L_18190050_SNP [dm3] 3L_18196950_SNP [dm6]	A	T	4.468e^-4	0.931	DOWNSTREAM CR45234 INTERGENIC
2R	10864991	2R_10864991_SNP [dm3] 2R_14977486_SNP [dm6]	T	A	4.469e^-4	0.931	INTRON ckn
X	13213524	X_13213524_SNP [dm3] X_13319491_SNP [dm6]	A	C	4.472e^-4	0.931	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2R	16540983	2R_16540983_SNP [dm3] 2R_20653478_SNP [dm6]	G	A	4.476e^-4	0.931	INTRON Lrt & 1 other
X	15322676	X_15322676_SNP [dm3] X_15428643_SNP [dm6]	T	C	4.481e^-4	0.931	INTRON Cngl
3L	429410	3L_429410_SNP [dm3] 3L_429410_SNP [dm6]	T	G	4.489e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	12415376	3L_12415376_SNP [dm3] 3L_12422276_SNP [dm6]	A	G	4.490e^-4	0.931	DOWNSTREAM toe INTERGENIC
2R	10836393	2R_10836393_SNP [dm3] 2R_14948888_SNP [dm6]	G	T	4.510e^-4	0.931	INTRON aPKC	TF binding site mE1_TFBS_cad
2L	1371407	2L_1371407_SNP [dm3] 2L_1371407_SNP [dm6]	T	G	4.518e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_Med
2L	2439020	2L_2439020_SNP [dm3] 2L_2439020_SNP [dm6]	C	G	4.521e^-4	0.931	INTRON dpp	regulatory region REDfly_CRMs
2L	2439034	2L_2439034_SNP [dm3] 2L_2439034_SNP [dm6]	A	T	4.521e^-4	0.931	INTRON dpp	regulatory region REDfly_CRMs
3R	4162805	3R_4162805_SNP [dm3] 3R_8337083_SNP [dm6]	A	T	4.521e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11851765	3L_11851765_SNP [dm3] 3L_11858665_SNP [dm6]	C	T	4.522e^-4	0.931	INTRON CG44837
3L	10930302	3L_10930302_SNP [dm3] 3L_10937202_SNP [dm6]	G	C	4.524e^-4	0.931	INTERGENIC
2R	11904736	2R_11904736_SNP [dm3] 2R_16017231_SNP [dm6]	G	C	4.533e^-4	0.931	UPSTREAM CG8399 & 1 other INTERGENIC
2L	19205936	2L_19205936_SNP [dm3] 2L_19205936_SNP [dm6]	G	A	4.541e^-4	0.931	NON_SYNONYMOUS_CODING drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14233979	3R_14233979_SNP [dm3] 3R_18408257_SNP [dm6]	T	C	4.544e^-4	0.931	INTRON CG31122	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4407342	2L_4407342_SNP [dm3] 2L_4407342_SNP [dm6]	T	C	4.549e^-4	0.931	NON_SYNONYMOUS_CODING CG15431	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9432634	X_9432634_SNP [dm3] X_9538601_SNP [dm6]	C	A	4.556e^-4	0.931	INTRON CG32700
3R	14234085	3R_14234085_SNP [dm3] 3R_18408363_SNP [dm6]	T	C	4.567e^-4	0.931	SYNONYMOUS_CODING CG31122	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	17138943	2R_17138943_SNP [dm3] 2R_21251438_SNP [dm6]	G	T	4.575e^-4	0.931	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10897451	3L_10897451_SNP [dm3] 3L_10904351_SNP [dm6]	A	T	4.575e^-4	0.931	INTERGENIC
3R	2991594	3R_2991594_SNP [dm3] 3R_7165872_SNP [dm6]	T	C	4.578e^-4	0.931	INTRON sas
2R	19132878	2R_19132878_SNP [dm3] 2R_23245355_SNP [dm6]	G	C	4.585e^-4	0.931	UTR_5_PRIME yip3
3R	26573353	3R_26573353_SNP [dm3] 3R_30747631_SNP [dm6]	T	A	4.595e^-4	0.931	UPSTREAM CR43238 INTERGENIC
2L	16591686	2L_16591686_SNP [dm3] 2L_16591686_SNP [dm6]	A	G	4.599e^-4	0.931	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7864088	2L_7864088_SNP [dm3] 2L_7864088_SNP [dm6]	A	T	4.604e^-4	0.931	DOWNSTREAM Proc INTERGENIC
2R	8090373	2R_8090373_SNP [dm3] 2R_12202868_SNP [dm6]	A	G	4.613e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_HSA
X	16098007	X_16098007_SNP [dm3] X_16203974_SNP [dm6]	G	A	4.620e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	15139018	2L_15139018_SNP [dm3] 2L_15139018_SNP [dm6]	A	T	4.624e^-4	0.931	INTERGENIC
2R	9643960	2R_9643960_SNP [dm3] 2R_13756455_SNP [dm6]	G	A	4.626e^-4	0.931	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_cad
3L	11316837	3L_11316837_SNP [dm3] 3L_11323737_SNP [dm6]	G	A	4.629e^-4	0.931	DOWNSTREAM CR44723 EXON CR44721 & 1 other
2R	18013631	2R_18013631_SNP [dm3] 2R_22126126_SNP [dm6]	A	G	4.640e^-4	0.931	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad
2L	8868173	2L_8868173_SNP [dm3] 2L_8868173_SNP [dm6]	A	T	4.651e^-4	0.931	UPSTREAM CR45260 DOWNSTREAM CG9483 EXON CR44414
2R	17140952	2R_17140952_SNP [dm3] 2R_21253447_SNP [dm6]	T	C	4.661e^-4	0.931	INTERGENIC
2R	8110464	2R_8110464_SNP [dm3] 2R_12222959_SNP [dm6]	G	C	4.682e^-4	0.931	INTERGENIC
2L	3430758	2L_3430758_SNP [dm3] 2L_3430758_SNP [dm6]	C	T	4.683e^-4	0.931	INTERGENIC
2L	3293836	2L_3293836_SNP [dm3] 2L_3293836_SNP [dm6]	A	G	4.684e^-4	0.931	UTR_5_PRIME CG9664
X	1784785	X_1784785_SNP [dm3] X_1890752_SNP [dm6]	T	C	4.685e^-4	0.931	SYNONYMOUS_CODING mRpL16 UPSTREAM trr DOWNSTREAM arm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14603332	2L_14603332_SNP [dm3] 2L_14603332_SNP [dm6]	C	T	4.685e^-4	0.931	SYNONYMOUS_CODING osp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2R	18922449	2R_18922449_SNP [dm3] 2R_23034926_SNP [dm6]	C	A	4.686e^-4	0.931	INTRON twi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	918523	2L_918523_SNP [dm3] 2L_918523_SNP [dm6]	C	G	4.687e^-4	0.931	DOWNSTREAM GluRIIC INTERGENIC	TF binding site mE1_TFBS_cad
2R	8101389	2R_8101389_SNP [dm3] 2R_12213884_SNP [dm6]	A	G	4.693e^-4	0.931	UPSTREAM CG13171 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	1751925	3L_1751925_DEL [dm3] 3L_1751925_DEL [dm6]	CTTC	C	4.700e^-4	0.931	UTR_3_PRIME CG13921 DOWNSTREAM Cht2
2R	8485603	2R_8485603_INS [dm3] 2R_12598098_INS [dm6]	A	AAA	4.700e^-4	0.931	INTRON Amph
3R	26572219	3R_26572219_SNP [dm3] 3R_30746497_SNP [dm6]	C	A	4.701e^-4	0.931	UPSTREAM Npc2h DOWNSTREAM CR43238 INTERGENIC	TF binding site mE1_TFBS_cad
2R	15770107	2R_15770107_SNP [dm3] 2R_19882602_SNP [dm6]	A	C	4.704e^-4	0.931	INTERGENIC
2R	9228318	2R_9228318_SNP [dm3] 2R_13340813_SNP [dm6]	G	C	4.711e^-4	0.931	INTRON CR44206	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8091288	2R_8091288_SNP [dm3] 2R_12203783_SNP [dm6]	G	T	4.716e^-4	0.931	INTERGENIC
2L	13629346	2L_13629346_SNP [dm3] 2L_13629346_SNP [dm6]	G	T	4.723e^-4	0.931	INTRON kuz
X	15004944	X_15004944_SNP [dm3] X_15110911_SNP [dm6]	G	A	4.724e^-4	0.931	DOWNSTREAM Rab3-GEF INTRON Rab3-GEF
3L	12710934	3L_12710934_SNP [dm3] 3L_12717834_SNP [dm6]	G	T	4.727e^-4	0.931	INTERGENIC
2L	6886987	2L_6886987_SNP [dm3] 2L_6886987_SNP [dm6]	A	G	4.730e^-4	0.931	INTRON Nlg2	TF binding site BDTNP1_TFBS_twi
2L	7200805	2L_7200805_SNP [dm3] 2L_7200805_SNP [dm6]	T	C	4.742e^-4	0.931	INTRON CG4502
3L	11633556	3L_11633556_SNP [dm3] 3L_11640456_SNP [dm6]	C	T	4.747e^-4	0.931	INTRON CG32091
3R	11030635	3R_11030635_SNP [dm3] 3R_15204913_SNP [dm6]	T	C	4.751e^-4	0.931	INTRON Spn88Ea
X	11478867	X_11478867_SNP [dm3] X_11584834_SNP [dm6]	A	C	4.756e^-4	0.931	NON_SYNONYMOUS_CODING nod UPSTREAM CG1561	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16501185	2R_16501185_SNP [dm3] 2R_20613680_SNP [dm6]	C	T	4.757e^-4	0.931	INTRON Hil
X	17673229	X_17673229_SNP [dm3] X_17779196_SNP [dm6]	C	T	4.758e^-4	0.931	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	16591730	2L_16591730_SNP [dm3] 2L_16591730_SNP [dm6]	T	A	4.762e^-4	0.931	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26098772	3R_26098772_SNP [dm3] 3R_30273050_SNP [dm6]	T	G	4.771e^-4	0.931	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	5916188	2L_5916188_SNP [dm3] 2L_5916188_SNP [dm6]	G	A	4.779e^-4	0.931	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10145624	2L_10145624_SNP [dm3] 2L_10145624_SNP [dm6]	A	C	4.786e^-4	0.931	UTR_5_PRIME CG4839 INTRON CG44153 & 1 other
2L	12323752	2L_12323752_SNP [dm3] 2L_12323752_SNP [dm6]	T	C	4.786e^-4	0.931	INTERGENIC
2R	6506493	2R_6506493_SNP [dm3] 2R_10618988_SNP [dm6]	T	A	4.807e^-4	0.931	INTRON CG11883	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	16055254	2R_16055254_INS [dm3] 2R_20167749_INS [dm6]	A	ACTTGCA	4.809e^-4	0.931	INTERGENIC
2R	9165778	2R_9165778_SNP [dm3] 2R_13278273_SNP [dm6]	T	A	4.811e^-4	0.931	INTRON Dh31-R
X	12815795	X_12815795_SNP [dm3] X_12921762_SNP [dm6]	G	T	4.815e^-4	0.931	INTRON fne
2L	14313915	2L_14313915_SNP [dm3] 2L_14313915_SNP [dm6]	C	T	4.823e^-4	0.931	INTRON wb
2L	17055503	2L_17055503_SNP [dm3] 2L_17055503_SNP [dm6]	A	T	4.833e^-4	0.931	INTERGENIC
3L	10101278	3L_10101278_SNP [dm3] 3L_10108178_SNP [dm6]	G	A	4.838e^-4	0.931	INTRON dpr6
2L	6298645	2L_6298645_SNP [dm3] 2L_6298645_SNP [dm6]	A	G	4.855e^-4	0.931	INTRON Ddr
3L	12111916	3L_12111916_SNP [dm3] 3L_12118816_SNP [dm6]	C	G	4.859e^-4	0.931	SYNONYMOUS_CODING ssp DOWNSTREAM l_3_j2D3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9031423	3R_9031423_SNP [dm3] 3R_13205701_SNP [dm6]	G	T	4.865e^-4	0.931	INTERGENIC
2L	14007208	2L_14007208_SNP [dm3] 2L_14007208_SNP [dm6]	C	G	4.876e^-4	0.931	UPSTREAM CG42692 INTERGENIC
X	6198125	X_6198125_SNP [dm3] X_6304092_SNP [dm6]	C	T	4.877e^-4	0.931	START_GAINED CG3823 UTR_5_PRIME CG3823	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14844885	3R_14844885_SNP [dm3] 3R_19019163_SNP [dm6]	G	T	4.891e^-4	0.931	SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26562489	3R_26562489_SNP [dm3] 3R_30736767_SNP [dm6]	A	C	4.894e^-4	0.931	INTERGENIC
2R	6208319	2R_6208319_SNP [dm3] 2R_10320814_SNP [dm6]	C	T	4.901e^-4	0.931	SYNONYMOUS_CODING Ndg UPSTREAM CG34222
2R	9601504	2R_9601504_SNP [dm3] 2R_13713999_SNP [dm6]	G	A	4.904e^-4	0.931	INTRON fas
3L	17202773	3L_17202773_SNP [dm3] 3L_17209673_SNP [dm6]	T	C	4.908e^-4	0.931	INTRON Rbp6
2R	17139046	2R_17139046_SNP [dm3] 2R_21251541_SNP [dm6]	C	A	4.913e^-4	0.931	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	8414351	X_8414351_SNP [dm3] X_8520318_SNP [dm6]	T	C	4.915e^-4	0.931	INTRON Nrg
2R	10850100	2R_10850100_SNP [dm3] 2R_14962595_SNP [dm6]	G	A	4.918e^-4	0.931	UPSTREAM ckn INTRON aPKC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
2L	11933750	2L_11933750_SNP [dm3] 2L_11933750_SNP [dm6]	G	A	4.923e^-4	0.931	UPSTREAM Or33a INTERGENIC
3R	9867347	3R_9867347_INS [dm3] 3R_14041625_INS [dm6]	A	ACAGA	4.942e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8182192	X_8182192_SNP [dm3] X_8288159_SNP [dm6]	G	T	4.949e^-4	0.931	INTRON nAChRalpha3
3L	9318928	3L_9318928_SNP [dm3] 3L_9325828_SNP [dm6]	G	C	4.970e^-4	0.931	INTERGENIC
2L	4942641	2L_4942641_SNP [dm3] 2L_4942641_SNP [dm6]	G	A	4.976e^-4	0.931	UPSTREAM CG14044 INTERGENIC
2R	13941478	2R_13941478_SNP [dm3] 2R_18053973_SNP [dm6]	G	T	4.976e^-4	0.931	NON_SYNONYMOUS_CODING CG10911 UPSTREAM CR45313
2L	2157884	2L_2157884_INS [dm3] 2L_2157884_INS [dm6]	T	TT	4.976e^-4	0.931	UTR_3_PRIME aop	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	9714046	3R_9714046_SNP [dm3] 3R_13888324_SNP [dm6]	G	C	4.977e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	11025238	3R_11025238_SNP [dm3] 3R_15199516_SNP [dm6]	A	C	4.979e^-4	0.931	INTRON CG42542	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8435523	3R_8435523_DEL [dm3] 3R_12609801_DEL [dm6]	TAT	T	4.982e^-4	0.931	INTERGENIC
2L	20762119	2L_20762119_SNP [dm3] 2L_20762119_SNP [dm6]	A	C	4.983e^-4	0.931	UTR_3_PRIME dia INTRON dia	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1232046	X_1232046_SNP [dm3] X_1338013_SNP [dm6]	G	A	4.984e^-4	0.931	UTR_5_PRIME CG11409 INTRON CG11409	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	21351780	3L_21351780_SNP [dm3] 3L_21358680_SNP [dm6]	T	G	4.984e^-4	0.931	NON_SYNONYMOUS_CODING CG32437	TF binding site mE1_TFBS_sens
2L	2187807	2L_2187807_SNP [dm3] 2L_2187807_SNP [dm6]	A	G	4.985e^-4	0.931	DOWNSTREAM tRNA:CR31946 & 1 other EXON CR44066	TF binding site mE1_TFBS_chinmo
3L	17176082	3L_17176082_SNP [dm3] 3L_17182982_SNP [dm6]	A	G	4.985e^-4	0.931	INTRON Rbp6
X	9690936	X_9690936_DEL [dm3] X_9796903_DEL [dm6]	AA	A	4.986e^-4	0.931	INTRON CG32698
2L	8816840	2L_8816840_SNP [dm3] 2L_8816840_SNP [dm6]	G	A	4.989e^-4	0.931	INTERGENIC
2R	8093827	2R_8093827_SNP [dm3] 2R_12206322_SNP [dm6]	C	T	5.004e^-4	0.931	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	15317659	X_15317659_DEL [dm3] X_15423626_DEL [dm6]	TAAGCCTC	T	5.008e^-4	0.931	INTRON Cngl
2L	16591694	2L_16591694_SNP [dm3] 2L_16591694_SNP [dm6]	A	G	5.010e^-4	0.931	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	3005889	3L_3005889_SNP [dm3] 3L_3005889_SNP [dm6]	A	T	5.015e^-4	0.931	INTRON FMRFaR
3L	13060847	3L_13060847_SNP [dm3] 3L_13067747_SNP [dm6]	G	A	5.016e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	15439535	2R_15439535_SNP [dm3] 2R_19552030_SNP [dm6]	A	G	5.027e^-4	0.931	UPSTREAM CG43111 INTRON sm
2R	20208016	2R_20208016_SNP [dm3] 2R_24320493_SNP [dm6]	A	G	5.027e^-4	0.931	INTERGENIC
2L	5760824	2L_5760824_SNP [dm3] 2L_5760824_SNP [dm6]	T	A	5.030e^-4	0.931	UTR_3_PRIME CG11030 DOWNSTREAM CG11030
3R	4446966	3R_4446966_SNP [dm3] 3R_8621244_SNP [dm6]	T	C	5.046e^-4	0.931	INTRON 5-HT2B
2R	3171663	2R_3171663_SNP [dm3] 2R_7284158_SNP [dm6]	C	A	5.056e^-4	0.931	INTRON pwn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4207594	2R_4207594_SNP [dm3] 2R_8320089_SNP [dm6]	T	A	5.065e^-4	0.931	INTERGENIC
3L	10102354	3L_10102354_SNP [dm3] 3L_10109254_SNP [dm6]	T	C	5.066e^-4	0.931	INTRON dpr6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	8090075	2R_8090075_SNP [dm3] 2R_12202570_SNP [dm6]	T	C	5.067e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10428260	2R_10428260_SNP [dm3] 2R_14540755_SNP [dm6]	T	G	5.069e^-4	0.931	INTRON ttv
3R	3390215	3R_3390215_SNP [dm3] 3R_7564493_SNP [dm6]	G	C	5.071e^-4	0.931	INTERGENIC
X	12793017	X_12793017_SNP [dm3] X_12898984_SNP [dm6]	G	A	5.075e^-4	0.931	SYNONYMOUS_CODING CG32649 UPSTREAM CG32650	TF binding site mE1_TFBS_chinmo
2R	10865510	2R_10865510_SNP [dm3] 2R_14978005_SNP [dm6]	C	T	5.076e^-4	0.931	INTRON ckn	TF binding site mE1_TFBS_chinmo
3R	19457134	3R_19457134_SNP [dm3] 3R_23631412_SNP [dm6]	T	A	5.079e^-4	0.931	INTRON CG31145	TF binding site mE1_TFBS_inv

By genomic position
Variant impact
Gene name

mn_Surv_Azinpho_0_5 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results