DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.642e^-11)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	4.8646	0.0878

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2790 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	7710536	3R_7710536_SNP [dm3] 3R_11884814_SNP [dm6]	G	T	4.297e^-7	0.474	SYNONYMOUS_CODING mthl5 INTRON CG31368
2R	17085774	2R_17085774_SNP [dm3] 2R_21198269_SNP [dm6]	C	G	1.226e^-6	0.474	NON_SYNONYMOUS_CODING Lapsyn
3L	12641483	3L_12641483_SNP [dm3] 3L_12648383_SNP [dm6]	G	C	1.792e^-6	0.474	DOWNSTREAM CR43431 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	9180908	3L_9180908_SNP [dm3] 3L_9187808_SNP [dm6]	C	A	2.106e^-6	0.474	INTERGENIC
3R	20661325	3R_20661325_SNP [dm3] 3R_24835603_SNP [dm6]	C	A	2.269e^-6	0.474	UPSTREAM CR45216 & 1 other INTRON sosie	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	10232262	2L_10232262_DEL [dm3] 2L_10232262_DEL [dm6]	GA	G	2.387e^-6	0.474	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10232265	2L_10232265_SNP [dm3] 2L_10232265_SNP [dm6]	A	G	2.387e^-6	0.474	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10232271	2L_10232271_SNP [dm3] 2L_10232271_SNP [dm6]	C	A	2.497e^-6	0.474	UPSTREAM eEF1delta & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
X	4719972	X_4719972_SNP [dm3] X_4825939_SNP [dm6]	T	C	2.512e^-6	0.474	UPSTREAM CG12682 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7709869	3R_7709869_SNP [dm3] 3R_11884147_SNP [dm6]	C	A	2.528e^-6	0.474	SYNONYMOUS_CODING mthl5 INTRON CG31368
3R	797524	3R_797524_SNP [dm3] 3R_4971802_SNP [dm6]	G	A	2.890e^-6	0.493	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe
3R	27281690	3R_27281690_SNP [dm3] 3R_31455968_SNP [dm6]	C	A	3.382e^-6	0.511	INTRON Gprk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22557224	3L_22557224_SNP [dm3] 3L_22564124_SNP [dm6]	C	A	3.543e^-6	0.511	INTERGENIC
2R	17098670	2R_17098670_SNP [dm3] 2R_21211165_SNP [dm6]	A	G	3.896e^-6	0.522	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
3R	26642265	3R_26642265_DEL [dm3] 3R_30816543_DEL [dm6]	ATATAAAAACTGAGTCA...	A	4.650e^-6	0.532	INTRON cindr
X	18926968	X_18926968_SNP [dm3] X_19032935_SNP [dm6]	A	G	4.868e^-6	0.532	INTERGENIC
3R	20334443	3R_20334443_SNP [dm3] 3R_24508721_SNP [dm6]	T	G	5.096e^-6	0.532	DOWNSTREAM nAChRbeta2 INTERGENIC
2R	9525958	2R_9525958_SNP [dm3] 2R_13638453_SNP [dm6]	G	C	5.107e^-6	0.532	INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19206622	3R_19206622_SNP [dm3] 3R_23380900_SNP [dm6]	G	A	5.725e^-6	0.539	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo
3L	15114583	3L_15114583_SNP [dm3] 3L_15121483_SNP [dm6]	C	G	5.751e^-6	0.539	UPSTREAM CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10586705	2L_10586705_SNP [dm3] 2L_10586705_SNP [dm6]	T	C	6.124e^-6	0.547	INTRON Trim9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24051986	3R_24051986_SNP [dm3] 3R_28226264_SNP [dm6]	C	T	6.502e^-6	0.547	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10060843	2R_10060843_SNP [dm3] 2R_14173338_SNP [dm6]	T	G	6.947e^-6	0.547	UPSTREAM cg DOWNSTREAM CG8331 INTRON mRpS16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	7005107	2R_7005107_SNP [dm3] 2R_11117602_SNP [dm6]	C	T	7.313e^-6	0.547	UTR_3_PRIME Cyp12d1-p
3R	9917481	3R_9917481_SNP [dm3] 3R_14091759_SNP [dm6]	T	C	7.364e^-6	0.547	DOWNSTREAM CCHa1 INTRON Npc2b
2L	10232267	2L_10232267_SNP [dm3] 2L_10232267_SNP [dm6]	C	T	8.033e^-6	0.547	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6254419	3R_6254419_SNP [dm3] 3R_10428697_SNP [dm6]	C	T	8.446e^-6	0.547	INTERGENIC
2R	10060829	2R_10060829_SNP [dm3] 2R_14173324_SNP [dm6]	A	T	8.714e^-6	0.547	UPSTREAM cg DOWNSTREAM CG8331 INTRON mRpS16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	17891135	X_17891135_SNP [dm3] X_17997102_SNP [dm6]	G	A	8.846e^-6	0.547	INTRON Sh
3R	19020819	3R_19020819_SNP [dm3] 3R_23195097_SNP [dm6]	A	T	1.052e^-5	0.547	INTRON cnc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24137495	3R_24137495_SNP [dm3] 3R_28311773_SNP [dm6]	G	A	1.086e^-5	0.547	INTERGENIC
3R	15008179	3R_15008179_SNP [dm3] 3R_19182457_SNP [dm6]	G	T	1.141e^-5	0.547	INTRON CG31475
2R	10460322	2R_10460322_SNP [dm3] 2R_14572817_SNP [dm6]	C	A	1.150e^-5	0.547	SYNONYMOUS_CODING LamC INTRON ttv
3L	3665857	3L_3665857_SNP [dm3] 3L_3665857_SNP [dm6]	G	A	1.190e^-5	0.547	INTERGENIC
3L	13080624	3L_13080624_SNP [dm3] 3L_13087524_SNP [dm6]	A	G	1.194e^-5	0.547	UPSTREAM CG17300 EXON CR45749
3R	27150894	3R_27150894_SNP [dm3] 3R_31325172_SNP [dm6]	A	G	1.233e^-5	0.547	INTRON CG34347
3R	15008064	3R_15008064_SNP [dm3] 3R_19182342_SNP [dm6]	T	A	1.264e^-5	0.547	INTRON CG31475
2L	489500	2L_489500_SNP [dm3] 2L_489500_SNP [dm6]	C	T	1.266e^-5	0.547	INTRON ush
3R	27153377	3R_27153377_SNP [dm3] 3R_31327655_SNP [dm6]	C	G	1.283e^-5	0.547	INTRON CG34347	TF binding site mE1_TFBS_cad
3R	20661315	3R_20661315_INS [dm3] 3R_24835593_INS [dm6]	A	ATACACA	1.433e^-5	0.547	UPSTREAM CR45216 & 1 other INTRON sosie	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	15600705	3L_15600705_SNP [dm3] 3L_15607605_SNP [dm6]	C	A	1.450e^-5	0.547	UTR_3_PRIME RhoGAP71E
X	17907798	X_17907798_SNP [dm3] X_18013765_SNP [dm6]	A	G	1.660e^-5	0.547	INTRON Sh
2R	10060925	2R_10060925_SNP [dm3] 2R_14173420_SNP [dm6]	G	A	1.678e^-5	0.547	SYNONYMOUS_CODING mRpS16 UPSTREAM cg DOWNSTREAM CG8331	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25946483	3R_25946483_SNP [dm3] 3R_30120761_SNP [dm6]	T	A	1.688e^-5	0.547	UTR_3_PRIME sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19739950	3R_19739950_SNP [dm3] 3R_23914228_SNP [dm6]	G	C	1.695e^-5	0.547	INTRON sba	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	24181822	3R_24181822_SNP [dm3] 3R_28356100_SNP [dm6]	T	A	1.711e^-5	0.547	INTERGENIC
3R	20400124	3R_20400124_SNP [dm3] 3R_24574402_SNP [dm6]	T	A	1.718e^-5	0.547	INTRON CG13624
3R	21518257	3R_21518257_SNP [dm3] 3R_25692535_SNP [dm6]	T	G	1.733e^-5	0.547	INTERGENIC
X	7451414	X_7451414_SNP [dm3] X_7557381_SNP [dm6]	C	T	1.742e^-5	0.547	EXON CR44501	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	24134908	3R_24134908_SNP [dm3] 3R_28309186_SNP [dm6]	A	C	1.773e^-5	0.547	INTERGENIC
X	13402551	X_13402551_SNP [dm3] X_13508518_SNP [dm6]	C	T	1.801e^-5	0.547	INTRON Neto
2R	16956262	2R_16956262_SNP [dm3] 2R_21068757_SNP [dm6]	A	C	1.811e^-5	0.547	SYNONYMOUS_CODING Cht9 EXON CR44703	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19740320	3R_19740320_SNP [dm3] 3R_23914598_SNP [dm6]	T	A	1.836e^-5	0.547	INTRON sba	TF binding site mE1_TFBS_Kr
3R	21060754	3R_21060754_SNP [dm3] 3R_25235032_SNP [dm6]	A	G	1.855e^-5	0.547	SYNONYMOUS_CODING CG10420	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3245123	X_3245123_SNP [dm3] X_3351090_SNP [dm6]	C	T	1.879e^-5	0.547	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16726580	X_16726580_SNP [dm3] X_16832547_SNP [dm6]	A	T	1.918e^-5	0.547	INTRON CG13004	TF binding site BDTNP1_TFBS_twi
3R	20057189	3R_20057189_DEL [dm3] 3R_24231467_DEL [dm6]	AAGAA	A	1.978e^-5	0.547	UPSTREAM CR45217 INTRON mask EXON CR44092	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Trl
3R	25946474	3R_25946474_SNP [dm3] 3R_30120752_SNP [dm6]	C	T	2.110e^-5	0.547	SYNONYMOUS_CODING sima UTR_3_PRIME sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24045932	3R_24045932_SNP [dm3] 3R_28220210_SNP [dm6]	C	T	2.123e^-5	0.547	INTRON CG34354
2R	9924871	2R_9924871_SNP [dm3] 2R_14037366_SNP [dm6]	G	A	2.150e^-5	0.547	INTRON mam	TF binding site mE1_TFBS_HSA
3R	20420739	3R_20420739_SNP [dm3] 3R_24595017_SNP [dm6]	C	T	2.200e^-5	0.547	INTRON mld	TF binding site BDTNP1_TFBS_twi
X	17891056	X_17891056_INS [dm3] X_17997023_INS [dm6]	A	AA	2.200e^-5	0.547	INTRON Sh
3R	24142212	3R_24142212_SNP [dm3] 3R_28316490_SNP [dm6]	T	C	2.229e^-5	0.547	INTERGENIC
3L	13780404	3L_13780404_SNP [dm3] 3L_13787304_SNP [dm6]	A	C	2.248e^-5	0.547	INTRON bru-3
3L	10648482	3L_10648482_SNP [dm3] 3L_10655382_SNP [dm6]	A	T	2.280e^-5	0.547	INTRON CG32066
X	17906872	X_17906872_SNP [dm3] X_18012839_SNP [dm6]	C	A	2.286e^-5	0.547	INTRON Sh
3L	5404049	3L_5404049_SNP [dm3] 3L_5410949_SNP [dm6]	G	A	2.330e^-5	0.547	INTERGENIC
3R	20433924	3R_20433924_DEL [dm3] 3R_24608202_DEL [dm6]	CCGAAATGC	C	2.373e^-5	0.547	INTRON mld
X	17906847	X_17906847_SNP [dm3] X_18012814_SNP [dm6]	T	C	2.387e^-5	0.547	INTRON Sh
X	4376251	X_4376251_SNP [dm3] X_4482218_SNP [dm6]	C	T	2.404e^-5	0.547	SYNONYMOUS_CODING bi INTRON CR32773
3R	20067388	3R_20067388_SNP [dm3] 3R_24241666_SNP [dm6]	C	G	2.500e^-5	0.547	SYNONYMOUS_CODING mask	TF binding site mE1_TFBS_cad
3R	9917527	3R_9917527_SNP [dm3] 3R_14091805_SNP [dm6]	T	C	2.516e^-5	0.547	DOWNSTREAM CCHa1 INTRON Npc2b
3R	14795572	3R_14795572_SNP [dm3] 3R_18969850_SNP [dm6]	C	T	2.518e^-5	0.547	SYNONYMOUS_CODING CG42613 UTR_3_PRIME CG43732
2L	8179867	2L_8179867_SNP [dm3] 2L_8179867_SNP [dm6]	C	T	2.550e^-5	0.547	SPLICE_SITE_REGION Piezo INTRON Piezo	TF binding site mE1_TFBS_cad
3L	13780395	3L_13780395_SNP [dm3] 3L_13787295_SNP [dm6]	C	T	2.619e^-5	0.547	INTRON bru-3
3L	11115216	3L_11115216_SNP [dm3] 3L_11122116_SNP [dm6]	T	A	2.625e^-5	0.547	SYNONYMOUS_CODING Ufd1-like DOWNSTREAM mRpL2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17906859	X_17906859_SNP [dm3] X_18012826_SNP [dm6]	G	C	2.744e^-5	0.547	INTRON Sh
3R	25397981	3R_25397981_SNP [dm3] 3R_29572259_SNP [dm6]	C	T	2.761e^-5	0.547	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	17906858	X_17906858_SNP [dm3] X_18012825_SNP [dm6]	T	C	2.774e^-5	0.547	INTRON Sh
3R	19483410	3R_19483410_SNP [dm3] 3R_23657688_SNP [dm6]	C	T	2.796e^-5	0.547	INTRON CG31145
X	18926882	X_18926882_SNP [dm3] X_19032849_SNP [dm6]	T	C	2.803e^-5	0.547	INTERGENIC
3R	19845243	3R_19845243_SNP [dm3] 3R_24019521_SNP [dm6]	T	A	2.810e^-5	0.547	INTRON KrT95D
2R	6372638	2R_6372638_SNP [dm3] 2R_10485133_SNP [dm6]	T	G	2.815e^-5	0.547	UTR_5_PRIME pre-lola-G INTRON lola & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	17467987	3L_17467987_SNP [dm3] 3L_17474887_SNP [dm6]	C	G	2.817e^-5	0.547	SPLICE_SITE_REGION CG7580 UPSTREAM CG7580 DOWNSTREAM CG7589 INTRON CG7580	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad
3R	20419243	3R_20419243_SNP [dm3] 3R_24593521_SNP [dm6]	A	C	2.833e^-5	0.547	INTRON mld	TF binding site mE1_TFBS_sens
3L	10648477	3L_10648477_SNP [dm3] 3L_10655377_SNP [dm6]	G	A	2.837e^-5	0.547	INTRON CG32066
3R	20059848	3R_20059848_SNP [dm3] 3R_24234126_SNP [dm6]	G	T	2.897e^-5	0.547	UPSTREAM mask INTRON mask	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7121606	2R_7121606_SNP [dm3] 2R_11234101_SNP [dm6]	C	T	2.923e^-5	0.547	SYNONYMOUS_CODING CG13228 UPSTREAM CG13218
3R	25431860	3R_25431860_SNP [dm3] 3R_29606138_SNP [dm6]	C	A	2.933e^-5	0.547	INTRON alph
3R	21178074	3R_21178074_SNP [dm3] 3R_25352352_SNP [dm6]	G	T	2.982e^-5	0.547	DOWNSTREAM Fur1 INTRON Fur1
3L	3660462	3L_3660462_SNP [dm3] 3L_3660462_SNP [dm6]	C	G	3.001e^-5	0.547	DOWNSTREAM CG43098 INTERGENIC
2L	4690860	2L_4690860_SNP [dm3] 2L_4690860_SNP [dm6]	C	T	3.033e^-5	0.547	UPSTREAM CG3251 INTERGENIC
3L	2055449	3L_2055449_SNP [dm3] 3L_2055449_SNP [dm6]	A	C	3.068e^-5	0.547	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_sens
2R	15129621	2R_15129621_SNP [dm3] 2R_19242116_SNP [dm6]	T	C	3.073e^-5	0.547	INTRON cora
3R	15905117	3R_15905117_SNP [dm3] 3R_20079395_SNP [dm6]	C	A	3.078e^-5	0.547	INTERGENIC
3R	19904863	3R_19904863_SNP [dm3] 3R_24079141_SNP [dm6]	A	C	3.229e^-5	0.547	INTRON 4EHP
3L	3361917	3L_3361917_SNP [dm3] 3L_3361917_SNP [dm6]	C	T	3.229e^-5	0.547	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2R	4120072	2R_4120072_SNP [dm3] 2R_8232567_SNP [dm6]	A	G	3.279e^-5	0.547	UPSTREAM dpn INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	4120102	2R_4120102_SNP [dm3] 2R_8232597_SNP [dm6]	G	T	3.279e^-5	0.547	UPSTREAM dpn INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	3262966	2L_3262966_SNP [dm3] 2L_3262966_SNP [dm6]	G	C	3.317e^-5	0.547	UPSTREAM CR45338 INTERGENIC
X	17905954	X_17905954_SNP [dm3] X_18011921_SNP [dm6]	A	T	3.320e^-5	0.547	INTRON Sh
2R	17088175	2R_17088175_SNP [dm3] 2R_21200670_SNP [dm6]	C	T	3.320e^-5	0.547	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26641998	3R_26641998_SNP [dm3] 3R_30816276_SNP [dm6]	T	C	3.323e^-5	0.547	INTRON cindr
3L	13789012	3L_13789012_SNP [dm3] 3L_13795912_SNP [dm6]	C	T	3.333e^-5	0.547	INTRON bru-3
3L	13789013	3L_13789013_SNP [dm3] 3L_13795913_SNP [dm6]	C	T	3.333e^-5	0.547	INTRON bru-3
3R	14670003	3R_14670003_SNP [dm3] 3R_18844281_SNP [dm6]	C	T	3.367e^-5	0.547	INTRON CG18208
X	17906880	X_17906880_SNP [dm3] X_18012847_SNP [dm6]	G	T	3.425e^-5	0.547	INTRON Sh
3R	24047418	3R_24047418_SNP [dm3] 3R_28221696_SNP [dm6]	G	A	3.508e^-5	0.547	INTRON CG34354
3L	16489443	3L_16489443_SNP [dm3] 3L_16496343_SNP [dm6]	T	A	3.523e^-5	0.547	UPSTREAM CG42514 INTRON CG33158 & 1 other
2R	4120059	2R_4120059_SNP [dm3] 2R_8232554_SNP [dm6]	A	T	3.549e^-5	0.547	UPSTREAM dpn INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	2672761	2L_2672761_SNP [dm3] 2L_2672761_SNP [dm6]	A	G	3.552e^-5	0.547	DOWNSTREAM Gr23a INTERGENIC
3L	2041056	3L_2041056_SNP [dm3] 3L_2041056_SNP [dm6]	G	T	3.559e^-5	0.547	SYNONYMOUS_CODING sls
2R	10060940	2R_10060940_SNP [dm3] 2R_14173435_SNP [dm6]	T	G	3.561e^-5	0.547	SYNONYMOUS_CODING mRpS16 UPSTREAM cg DOWNSTREAM CG8331	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20815247	3R_20815247_SNP [dm3] 3R_24989525_SNP [dm6]	A	G	3.572e^-5	0.547	INTRON tnc
2L	14792716	2L_14792716_SNP [dm3] 2L_14792716_SNP [dm6]	C	T	3.606e^-5	0.547	INTERGENIC
3R	19050151	3R_19050151_SNP [dm3] 3R_23224429_SNP [dm6]	A	C	3.615e^-5	0.547	INTRON cnc
2L	12698575	2L_12698575_SNP [dm3] 2L_12698575_SNP [dm6]	G	A	3.649e^-5	0.547	SYNONYMOUS_CODING PICK1 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17098498	2R_17098498_SNP [dm3] 2R_21210993_SNP [dm6]	G	A	3.764e^-5	0.547	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
3R	25054711	3R_25054711_SNP [dm3] 3R_29228989_SNP [dm6]	T	A	3.785e^-5	0.547	UPSTREAM CG15817 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	10543884	3L_10543884_SNP [dm3] 3L_10550784_SNP [dm6]	A	G	3.805e^-5	0.547	INTRON A2bp1
3R	10827227	3R_10827227_SNP [dm3] 3R_15001505_SNP [dm6]	T	G	3.825e^-5	0.547	INTERGENIC
3R	15008070	3R_15008070_SNP [dm3] 3R_19182348_SNP [dm6]	T	C	3.827e^-5	0.547	INTRON CG31475
X	17907795	X_17907795_SNP [dm3] X_18013762_SNP [dm6]	A	G	3.847e^-5	0.547	INTRON Sh
4	141694	4_141694_SNP [dm3] 4_121068_SNP [dm6]	T	A	3.876e^-5	0.547	SYNONYMOUS_CODING Ank
2R	17085845	2R_17085845_SNP [dm3] 2R_21198340_SNP [dm6]	T	C	3.911e^-5	0.547	SYNONYMOUS_CODING Lapsyn
X	12168370	X_12168370_DEL [dm3] X_12274337_DEL [dm6]	GTAG	G	3.919e^-5	0.547	UPSTREAM CG45603 INTRON Ten-a
2R	848197	2R_848197_SNP [dm3] 2R_4960692_SNP [dm6]	G	A	3.920e^-5	0.547	INTRON Ir41a	transposable element FlyBase
2L	487048	2L_487048_SNP [dm3] 2L_487048_SNP [dm6]	A	C	3.935e^-5	0.547	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	20049918	3R_20049918_SNP [dm3] 3R_24224196_SNP [dm6]	C	T	3.936e^-5	0.547	SYNONYMOUS_CODING Spps DOWNSTREAM cav	TF binding site mE1_TFBS_chinmo
3L	18643057	3L_18643057_SNP [dm3] 3L_18649957_SNP [dm6]	A	T	3.940e^-5	0.547	INTRON MYPT-75D
2R	9924958	2R_9924958_SNP [dm3] 2R_14037453_SNP [dm6]	G	T	3.971e^-5	0.547	INTRON mam	TF binding site mE1_TFBS_HSA
3R	14671197	3R_14671197_SNP [dm3] 3R_18845475_SNP [dm6]	A	C	4.092e^-5	0.547	INTRON CG18208
3R	20440372	3R_20440372_INS [dm3] 3R_24614650_INS [dm6]	T	TG	4.100e^-5	0.547	INTRON mld
X	17906828	X_17906828_SNP [dm3] X_18012795_SNP [dm6]	T	C	4.160e^-5	0.547	INTRON Sh
3R	21053470	3R_21053470_SNP [dm3] 3R_25227748_SNP [dm6]	G	T	4.177e^-5	0.547	INTRON Cad96Cb
2L	12698977	2L_12698977_SNP [dm3] 2L_12698977_SNP [dm6]	C	G	4.179e^-5	0.547	UTR_3_PRIME CG17036 DOWNSTREAM CG17036 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17905622	X_17905622_SNP [dm3] X_18011589_SNP [dm6]	C	T	4.230e^-5	0.547	INTRON Sh
3R	19482483	3R_19482483_SNP [dm3] 3R_23656761_SNP [dm6]	G	A	4.273e^-5	0.547	INTRON CG31145
X	16888280	X_16888280_SNP [dm3] X_16994247_SNP [dm6]	G	T	4.294e^-5	0.547	INTRON CG45002
3L	10468193	3L_10468193_SNP [dm3] 3L_10475093_SNP [dm6]	C	T	4.322e^-5	0.547	INTERGENIC
2R	11812913	2R_11812913_SNP [dm3] 2R_15925408_SNP [dm6]	A	G	4.328e^-5	0.547	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24136716	3R_24136716_SNP [dm3] 3R_28310994_SNP [dm6]	T	G	4.393e^-5	0.547	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	10080443	3R_10080443_SNP [dm3] 3R_14254721_SNP [dm6]	T	C	4.434e^-5	0.547	INTRON Aats-met
3R	9899334	3R_9899334_SNP [dm3] 3R_14073612_SNP [dm6]	T	A	4.471e^-5	0.547	INTRON foxo
X	3807721	X_3807721_SNP [dm3] X_3913688_SNP [dm6]	A	C	4.500e^-5	0.547	INTRON CG42541
2R	10060928	2R_10060928_SNP [dm3] 2R_14173423_SNP [dm6]	A	G	4.504e^-5	0.547	SYNONYMOUS_CODING mRpS16 UPSTREAM cg DOWNSTREAM CG8331	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16667377	2R_16667377_SNP [dm3] 2R_20779872_SNP [dm6]	A	T	4.505e^-5	0.547	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC
3L	14330900	3L_14330900_SNP [dm3] 3L_14337800_SNP [dm6]	A	T	4.555e^-5	0.547	INTRON fz
3L	13758276	3L_13758276_SNP [dm3] 3L_13765176_SNP [dm6]	T	C	4.600e^-5	0.547	INTRON bru-3
2R	21060654	2R_21060654_SNP [dm3] 2R_25173131_SNP [dm6]	G	A	4.638e^-5	0.547	UPSTREAM Sfp60F DOWNSTREAM PebII INTERGENIC	transposable element FlyBase
3L	9836646	3L_9836646_SNP [dm3] 3L_9843546_SNP [dm6]	C	T	4.646e^-5	0.547	SPLICE_SITE_REGION RasGAP1 INTRON RasGAP1	TF binding site mE1_TFBS_HSA
3R	21518163	3R_21518163_SNP [dm3] 3R_25692441_SNP [dm6]	G	A	4.667e^-5	0.547	INTERGENIC
3R	20056497	3R_20056497_SNP [dm3] 3R_24230775_SNP [dm6]	C	T	4.683e^-5	0.547	UPSTREAM Spase22-23 & 1 other INTRON mask EXON CR45217	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	17905870	X_17905870_SNP [dm3] X_18011837_SNP [dm6]	T	C	4.744e^-5	0.547	INTRON Sh
2R	7121591	2R_7121591_SNP [dm3] 2R_11234086_SNP [dm6]	G	A	4.763e^-5	0.547	SYNONYMOUS_CODING CG13228 UPSTREAM CG13218
3R	26189071	3R_26189071_SNP [dm3] 3R_30363349_SNP [dm6]	C	T	4.772e^-5	0.547	UTR_3_PRIME hdc
3R	21503058	3R_21503058_SNP [dm3] 3R_25677336_SNP [dm6]	G	T	4.779e^-5	0.547	NON_SYNONYMOUS_CODING CG4730 UPSTREAM CR45225 DOWNSTREAM Lgr3
X	17907707	X_17907707_SNP [dm3] X_18013674_SNP [dm6]	C	T	4.785e^-5	0.547	INTRON Sh
3R	9917524	3R_9917524_SNP [dm3] 3R_14091802_SNP [dm6]	C	T	4.822e^-5	0.547	DOWNSTREAM CCHa1 INTRON Npc2b
3R	24112496	3R_24112496_SNP [dm3] 3R_28286774_SNP [dm6]	A	T	4.925e^-5	0.547	INTERGENIC
3L	14493142	3L_14493142_SNP [dm3] 3L_14500042_SNP [dm6]	C	T	4.944e^-5	0.547	INTRON bbg
3L	14493143	3L_14493143_SNP [dm3] 3L_14500043_SNP [dm6]	T	A	4.944e^-5	0.547	INTRON bbg
3R	20052851	3R_20052851_SNP [dm3] 3R_24227129_SNP [dm6]	G	A	4.994e^-5	0.547	SYNONYMOUS_CODING CG13609 UPSTREAM Spps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	13212661	2L_13212661_SNP [dm3] 2L_13212661_SNP [dm6]	A	T	5.089e^-5	0.547	NON_SYNONYMOUS_CODING kek4 UPSTREAM CG15482 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13691927	3R_13691927_INS [dm3] 3R_17866205_INS [dm6]	A	AG	5.092e^-5	0.547	INTRON tinc
3R	19207240	3R_19207240_SNP [dm3] 3R_23381518_SNP [dm6]	G	C	5.117e^-5	0.547	INTRON CG4393	TF binding site mE1_TFBS_cad
3R	24173201	3R_24173201_SNP [dm3] 3R_28347479_SNP [dm6]	G	A	5.153e^-5	0.547	INTERGENIC
3R	25464726	3R_25464726_SNP [dm3] 3R_29639004_SNP [dm6]	A	T	5.157e^-5	0.547	UTR_3_PRIME Dop1R2 INTRON Dop1R2
3L	15448878	3L_15448878_SNP [dm3] 3L_15455778_SNP [dm6]	C	T	5.193e^-5	0.547	INTERGENIC
2R	8725261	2R_8725261_SNP [dm3] 2R_12837756_SNP [dm6]	A	C	5.222e^-5	0.547	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14796886	2R_14796886_SNP [dm3] 2R_18909381_SNP [dm6]	C	T	5.248e^-5	0.547	SYNONYMOUS_CODING Vha100-3 INTRON sano
3L	12533103	3L_12533103_SNP [dm3] 3L_12540003_SNP [dm6]	G	A	5.287e^-5	0.547	SYNONYMOUS_CODING sowah INTRON sowah	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9526476	2R_9526476_SNP [dm3] 2R_13638971_SNP [dm6]	G	A	5.318e^-5	0.547	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24054889	3R_24054889_SNP [dm3] 3R_28229167_SNP [dm6]	C	A	5.336e^-5	0.547	INTRON CG34354
3L	10543912	3L_10543912_SNP [dm3] 3L_10550812_SNP [dm6]	G	A	5.354e^-5	0.547	INTRON A2bp1
3L	12641484	3L_12641484_SNP [dm3] 3L_12648384_SNP [dm6]	T	G	5.360e^-5	0.547	DOWNSTREAM CR43431 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	26126977	3R_26126977_SNP [dm3] 3R_30301255_SNP [dm6]	A	G	5.408e^-5	0.547	INTRON hdc
3R	7148040	3R_7148040_SNP [dm3] 3R_11322318_SNP [dm6]	C	T	5.436e^-5	0.547	INTERGENIC
3R	6255457	3R_6255457_SNP [dm3] 3R_10429735_SNP [dm6]	T	A	5.459e^-5	0.547	INTERGENIC
3R	20010279	3R_20010279_SNP [dm3] 3R_24184557_SNP [dm6]	C	G	5.570e^-5	0.547	DOWNSTREAM CG13606 INTERGENIC
3R	20027334	3R_20027334_SNP [dm3] 3R_24201612_SNP [dm6]	G	A	5.570e^-5	0.547	UPSTREAM twin INTRON twin
3R	20193970	3R_20193970_SNP [dm3] 3R_24368248_SNP [dm6]	A	G	5.607e^-5	0.547	UPSTREAM CG33341 & 1 other INTERGENIC
3L	6938549	3L_6938549_SNP [dm3] 3L_6945449_SNP [dm6]	A	G	5.633e^-5	0.547	INTRON tow	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	19042536	3R_19042536_SNP [dm3] 3R_23216814_SNP [dm6]	A	G	5.670e^-5	0.547	INTRON cnc
3L	8597724	3L_8597724_SNP [dm3] 3L_8604624_SNP [dm6]	G	A	5.673e^-5	0.547	UPSTREAM CG6282 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	20010278	3R_20010278_SNP [dm3] 3R_24184556_SNP [dm6]	G	C	5.686e^-5	0.547	DOWNSTREAM CG13606 INTERGENIC
3R	20058753	3R_20058753_SNP [dm3] 3R_24233031_SNP [dm6]	C	T	5.686e^-5	0.547	INTRON mask	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo
2R	9979891	2R_9979891_SNP [dm3] 2R_14092386_SNP [dm6]	A	G	5.689e^-5	0.547	UTR_5_PRIME Prosap DOWNSTREAM CG42288
2R	16802426	2R_16802426_SNP [dm3] 2R_20914921_SNP [dm6]	C	G	5.720e^-5	0.547	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	12857210	3R_12857210_SNP [dm3] 3R_17031488_SNP [dm6]	C	T	5.724e^-5	0.547	UPSTREAM CG31268 DOWNSTREAM CG5225 INTERGENIC
3L	14493053	3L_14493053_DEL [dm3] 3L_14499953_DEL [dm6]	GGAA	G	5.725e^-5	0.547	INTRON bbg
3L	14493059	3L_14493059_DEL [dm3] 3L_14499959_DEL [dm6]	ACTATATCGCAATTGCG...	T	5.725e^-5	0.547	INTRON bbg
3R	19894457	3R_19894457_SNP [dm3] 3R_24068735_SNP [dm6]	C	T	5.752e^-5	0.547	INTRON 4EHP
3R	24124175	3R_24124175_SNP [dm3] 3R_28298453_SNP [dm6]	G	A	5.822e^-5	0.547	INTERGENIC
2R	7007339	2R_7007339_SNP [dm3] 2R_11119834_SNP [dm6]	T	C	5.853e^-5	0.547	UTR_3_PRIME Cyp12d1-p DOWNSTREAM Cyp12d1-p
3R	24141307	3R_24141307_DEL [dm3] 3R_28315585_DEL [dm6]	CC	C	5.877e^-5	0.547	INTERGENIC	TF binding site mE1_TFBS_inv
3R	24050691	3R_24050691_SNP [dm3] 3R_28224969_SNP [dm6]	G	A	5.881e^-5	0.547	INTRON CG34354	TF binding site mE1_TFBS_HSA
3L	14493082	3L_14493082_SNP [dm3] 3L_14499982_SNP [dm6]	A	T	5.897e^-5	0.547	INTRON bbg
3R	7576999	3R_7576999_SNP [dm3] 3R_11751277_SNP [dm6]	C	T	5.919e^-5	0.547	UTR_3_PRIME Lk6 DOWNSTREAM CG43062
2R	7121593	2R_7121593_SNP [dm3] 2R_11234088_SNP [dm6]	A	G	5.949e^-5	0.547	NON_SYNONYMOUS_CODING CG13228 UPSTREAM CG13218
3L	11116986	3L_11116986_SNP [dm3] 3L_11123886_SNP [dm6]	A	C	5.950e^-5	0.547	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24210996	3R_24210996_SNP [dm3] 3R_28385274_SNP [dm6]	G	T	5.951e^-5	0.547	INTERGENIC
3R	19705667	3R_19705667_DEL [dm3] 3R_23879945_DEL [dm6]	AGGTATATTAC...	A	6.034e^-5	0.547	INTRON Pli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24181169	3R_24181169_SNP [dm3] 3R_28355447_SNP [dm6]	C	T	6.048e^-5	0.547	INTERGENIC
3R	19487831	3R_19487831_SNP [dm3] 3R_23662109_SNP [dm6]	T	C	6.066e^-5	0.547	INTRON CG31145
X	3245260	X_3245260_SNP [dm3] X_3351227_SNP [dm6]	T	A	6.102e^-5	0.547	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25973194	3R_25973194_SNP [dm3] 3R_30147472_SNP [dm6]	G	A	6.109e^-5	0.547	INTRON AdoR
3R	26476624	3R_26476624_SNP [dm3] 3R_30650902_SNP [dm6]	A	G	6.145e^-5	0.547	DOWNSTREAM CG34433 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17905961	X_17905961_SNP [dm3] X_18011928_SNP [dm6]	A	T	6.155e^-5	0.547	INTRON Sh
2L	20233279	2L_20233279_SNP [dm3] 2L_20233279_SNP [dm6]	C	T	6.160e^-5	0.547	INTERGENIC
3R	20815330	3R_20815330_SNP [dm3] 3R_24989608_SNP [dm6]	G	C	6.175e^-5	0.547	INTRON tnc
3L	12647311	3L_12647311_SNP [dm3] 3L_12654211_SNP [dm6]	A	G	6.181e^-5	0.547	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8984411	X_8984411_DEL [dm3] X_9090378_DEL [dm6]	GTCATG	G	6.298e^-5	0.548	UPSTREAM mir-13b-2 INTRON CG7033	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_inv
3R	26914961	3R_26914961_SNP [dm3] 3R_31089239_SNP [dm6]	G	C	6.425e^-5	0.548	INTERGENIC
3R	27281756	3R_27281756_SNP [dm3] 3R_31456034_SNP [dm6]	G	T	6.450e^-5	0.548	INTRON Gprk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14493117	3L_14493117_SNP [dm3] 3L_14500017_SNP [dm6]	C	A	6.500e^-5	0.548	INTRON bbg
3R	23537596	3R_23537596_SNP [dm3] 3R_27711874_SNP [dm6]	C	A	6.550e^-5	0.548	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6285050	3R_6285050_SNP [dm3] 3R_10459328_SNP [dm6]	G	T	6.557e^-5	0.548	INTERGENIC
3R	20403963	3R_20403963_DEL [dm3] 3R_24578241_DEL [dm6]	TA	T	6.582e^-5	0.548	UPSTREAM CG13624 INTRON CG13624
2R	9905656	2R_9905656_SNP [dm3] 2R_14018151_SNP [dm6]	G	A	6.586e^-5	0.548	INTRON mam
3R	19879729	3R_19879729_DEL [dm3] 3R_24054007_DEL [dm6]	GAAT	G	6.622e^-5	0.548	UPSTREAM CG6000 & 1 other DOWNSTREAM CG5991 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19906382	3R_19906382_DEL [dm3] 3R_24080660_DEL [dm6]	AATATCAATTTATTATCTAC...	A	6.622e^-5	0.548	INTRON 4EHP
3R	19970263	3R_19970263_SNP [dm3] 3R_24144541_SNP [dm6]	T	C	6.622e^-5	0.548	INTRON Kal1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4003328	3L_4003328_SNP [dm3] 3L_4003328_SNP [dm6]	A	C	6.625e^-5	0.548	UPSTREAM CG14985 INTERGENIC
X	3245122	X_3245122_SNP [dm3] X_3351089_SNP [dm6]	C	G	6.678e^-5	0.548	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20278811	3R_20278811_SNP [dm3] 3R_24453089_SNP [dm6]	A	G	6.788e^-5	0.548	INTRON nAChRalpha1
2L	12698596	2L_12698596_SNP [dm3] 2L_12698596_SNP [dm6]	A	C	6.789e^-5	0.548	NON_SYNONYMOUS_CODING PICK1 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	21050377	2R_21050377_DEL [dm3] 2R_25162854_DEL [dm6]	TT	T	6.896e^-5	0.548	INTERGENIC
3R	27277992	3R_27277992_SNP [dm3] 3R_31452270_SNP [dm6]	G	C	6.904e^-5	0.548	INTRON Gprk2	TF binding site mE1_TFBS_cad
2R	13185285	2R_13185285_SNP [dm3] 2R_17297780_SNP [dm6]	T	C	6.919e^-5	0.548	INTRON mbl
X	13402360	X_13402360_SNP [dm3] X_13508327_SNP [dm6]	C	T	7.012e^-5	0.548	INTRON Neto
3R	19852931	3R_19852931_SNP [dm3] 3R_24027209_SNP [dm6]	C	A	7.051e^-5	0.548	INTRON KrT95D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13402318	X_13402318_SNP [dm3] X_13508285_SNP [dm6]	A	C	7.093e^-5	0.548	INTRON Neto
X	13402319	X_13402319_SNP [dm3] X_13508286_SNP [dm6]	T	C	7.093e^-5	0.548	INTRON Neto
2R	8573906	2R_8573906_SNP [dm3] 2R_12686401_SNP [dm6]	A	C	7.095e^-5	0.548	UPSTREAM CG13148 & 1 other INTRON CG13148	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	17906870	X_17906870_INS [dm3] X_18012837_INS [dm6]	T	CCAAATATAGAG...	7.104e^-5	0.548	INTRON Sh
2R	17790573	2R_17790573_SNP [dm3] 2R_21903068_SNP [dm6]	A	G	7.136e^-5	0.548	INTRON Fili
2L	12698825	2L_12698825_SNP [dm3] 2L_12698825_SNP [dm6]	A	T	7.146e^-5	0.548	UTR_3_PRIME PICK1 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14848415	2R_14848415_SNP [dm3] 2R_18960910_SNP [dm6]	A	G	7.231e^-5	0.548	INTERGENIC
2R	15129613	2R_15129613_SNP [dm3] 2R_19242108_SNP [dm6]	C	T	7.265e^-5	0.548	INTRON cora
2L	20855307	2L_20855307_SNP [dm3] 2L_20855307_SNP [dm6]	C	T	7.322e^-5	0.548	INTRON twit
3R	19738520	3R_19738520_SNP [dm3] 3R_23912798_SNP [dm6]	C	A	7.322e^-5	0.548	INTRON sba
3R	7524817	3R_7524817_SNP [dm3] 3R_11699095_SNP [dm6]	A	C	7.323e^-5	0.548	DOWNSTREAM CG14717 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	9898511	3R_9898511_SNP [dm3] 3R_14072789_SNP [dm6]	G	A	7.334e^-5	0.548	INTRON foxo
3R	20233009	3R_20233009_SNP [dm3] 3R_24407287_SNP [dm6]	G	C	7.354e^-5	0.548	INTRON nAChRalpha1
2R	7004530	2R_7004530_SNP [dm3] 2R_11117025_SNP [dm6]	T	A	7.356e^-5	0.548	UPSTREAM luna DOWNSTREAM Cyp12d1-p INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24220204	3R_24220204_SNP [dm3] 3R_28394482_SNP [dm6]	G	T	7.409e^-5	0.548	INTERGENIC
3R	20176259	3R_20176259_SNP [dm3] 3R_24350537_SNP [dm6]	G	C	7.421e^-5	0.548	INTRON CG6454
3R	20334216	3R_20334216_INS [dm3] 3R_24508494_INS [dm6]	G	GATAT	7.421e^-5	0.548	DOWNSTREAM nAChRbeta2 INTERGENIC
3R	20424988	3R_20424988_SNP [dm3] 3R_24599266_SNP [dm6]	A	G	7.421e^-5	0.548	INTRON mld	TF binding site mE1_TFBS_HSA
3R	20376054	3R_20376054_SNP [dm3] 3R_24550332_SNP [dm6]	T	G	7.497e^-5	0.548	INTRON Esyt2
2R	13054259	2R_13054259_SNP [dm3] 2R_17166754_SNP [dm6]	A	T	7.550e^-5	0.548	UPSTREAM CG10953 INTERGENIC
3R	24499065	3R_24499065_SNP [dm3] 3R_28673343_SNP [dm6]	C	T	7.594e^-5	0.548	INTERGENIC
X	17300532	X_17300532_DEL [dm3] X_17406499_DEL [dm6]	AGTAG	A	7.597e^-5	0.548	INTERGENIC
3R	26476654	3R_26476654_SNP [dm3] 3R_30650932_SNP [dm6]	C	T	7.675e^-5	0.548	DOWNSTREAM CG34433 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9226096	X_9226096_SNP [dm3] X_9332063_SNP [dm6]	T	A	7.678e^-5	0.548	INTRON CG34449
X	7444979	X_7444979_SNP [dm3] X_7550946_SNP [dm6]	A	T	7.696e^-5	0.548	INTERGENIC
2R	10892733	2R_10892733_SNP [dm3] 2R_15005228_SNP [dm6]	T	A	7.714e^-5	0.548	INTERGENIC
3R	24172934	3R_24172934_SNP [dm3] 3R_28347212_SNP [dm6]	G	T	7.740e^-5	0.548	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25393022	3R_25393022_SNP [dm3] 3R_29567300_SNP [dm6]	C	T	7.745e^-5	0.548	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
3R	22878554	3R_22878554_SNP [dm3] 3R_27052832_SNP [dm6]	G	A	7.761e^-5	0.548	INTRON RYa-R
3R	24162448	3R_24162448_SNP [dm3] 3R_28336726_SNP [dm6]	C	G	7.769e^-5	0.548	UPSTREAM larp DOWNSTREAM Gfat2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	8537129	2L_8537129_INS [dm3] 2L_8537129_INS [dm6]	T	TT	7.813e^-5	0.548	INTRON CG17834
2L	8537132	2L_8537132_SNP [dm3] 2L_8537132_SNP [dm6]	C	T	7.813e^-5	0.548	INTRON CG17834
X	12168353	X_12168353_DEL [dm3] X_12274320_DEL [dm6]	TACTGGT	T	7.829e^-5	0.548	UPSTREAM CG45603 INTRON Ten-a
2R	20523677	2R_20523677_SNP [dm3] 2R_24636154_SNP [dm6]	G	A	7.866e^-5	0.548	INTRON CG13594	TF binding site mE1_TFBS_chinmo
3R	26038957	3R_26038957_SNP [dm3] 3R_30213235_SNP [dm6]	T	A	7.927e^-5	0.548	DOWNSTREAM CecB & 2 others INTERGENIC
3R	20423125	3R_20423125_SNP [dm3] 3R_24597403_SNP [dm6]	G	A	7.928e^-5	0.548	INTRON mld	TF binding site mE1_TFBS_sens
X	7444982	X_7444982_DEL [dm3] X_7550949_DEL [dm6]	AA	A	7.951e^-5	0.548	INTERGENIC
3R	20052283	3R_20052283_SNP [dm3] 3R_24226561_SNP [dm6]	G	A	7.955e^-5	0.548	NON_SYNONYMOUS_CODING Spps UPSTREAM CG13609	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20403953	3R_20403953_SNP [dm3] 3R_24578231_SNP [dm6]	T	C	7.970e^-5	0.548	UPSTREAM CG13624 INTRON CG13624
4	995018	4_995018_SNP [dm3] 4_974392_SNP [dm6]	A	G	7.971e^-5	0.548	UPSTREAM sphinx INTRON fuss	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20232096	3R_20232096_SNP [dm3] 3R_24406374_SNP [dm6]	G	A	8.095e^-5	0.548	INTRON nAChRalpha1
3R	20309427	3R_20309427_SNP [dm3] 3R_24483705_SNP [dm6]	G	A	8.095e^-5	0.548	INTERGENIC
3R	20352699	3R_20352699_SNP [dm3] 3R_24526977_SNP [dm6]	G	T	8.095e^-5	0.548	INTRON CG13618
3R	20405966	3R_20405966_SNP [dm3] 3R_24580244_SNP [dm6]	G	A	8.095e^-5	0.548	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11543084	3R_11543084_SNP [dm3] 3R_15717362_SNP [dm6]	C	T	8.188e^-5	0.548	UPSTREAM CG31294 INTERGENIC
2R	17102405	2R_17102405_SNP [dm3] 2R_21214900_SNP [dm6]	T	A	8.345e^-5	0.548	DOWNSTREAM CG15661 INTRON CG4302
3R	19048414	3R_19048414_SNP [dm3] 3R_23222692_SNP [dm6]	T	A	8.423e^-5	0.548	UPSTREAM cnc INTRON cnc
2R	16667463	2R_16667463_SNP [dm3] 2R_20779958_SNP [dm6]	C	T	8.461e^-5	0.548	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC
3R	9663041	3R_9663041_SNP [dm3] 3R_13837319_SNP [dm6]	T	A	8.469e^-5	0.548	DOWNSTREAM CG31495 INTRON Nsf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12070583	3L_12070583_SNP [dm3] 3L_12077483_SNP [dm6]	G	A	8.580e^-5	0.548	INTRON Sema-5c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4572217	X_4572217_INS [dm3] X_4678184_INS [dm6]	G	GG	8.612e^-5	0.548	UPSTREAM rap INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20330903	3R_20330903_SNP [dm3] 3R_24505181_SNP [dm6]	A	G	8.624e^-5	0.548	INTERGENIC
3R	22226218	3R_22226218_SNP [dm3] 3R_26400496_SNP [dm6]	A	T	8.631e^-5	0.548	INTERGENIC
3R	19743344	3R_19743344_SNP [dm3] 3R_23917622_SNP [dm6]	C	A	8.675e^-5	0.548	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
4	915832	4_915832_SNP [dm3] 4_895206_SNP [dm6]	T	A	8.684e^-5	0.548	INTRON unc-13	transposable element FlyBase
2L	6259517	2L_6259517_DEL [dm3] 2L_6259517_DEL [dm6]	AAAAA	A	8.693e^-5	0.548	INTRON Ddr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13743805	2R_13743805_SNP [dm3] 2R_17856300_SNP [dm6]	C	A	8.721e^-5	0.548	UTR_5_PRIME olf186-F INTRON olf186-F	TF binding site mE1_TFBS_Trl
2R	9905660	2R_9905660_SNP [dm3] 2R_14018155_SNP [dm6]	T	G	8.761e^-5	0.548	INTRON mam
3R	20334369	3R_20334369_SNP [dm3] 3R_24508647_SNP [dm6]	T	A	8.819e^-5	0.548	DOWNSTREAM nAChRbeta2 INTERGENIC
3R	21503055	3R_21503055_SNP [dm3] 3R_25677333_SNP [dm6]	G	T	8.840e^-5	0.548	NON_SYNONYMOUS_CODING CG4730 UPSTREAM CR45225 DOWNSTREAM Lgr3
2L	4741241	2L_4741241_SNP [dm3] 2L_4741241_SNP [dm6]	A	G	8.848e^-5	0.548	INTRON CG15630
X	16890991	X_16890991_SNP [dm3] X_16996958_SNP [dm6]	G	A	8.883e^-5	0.548	INTRON CG45002
2R	19034866	2R_19034866_SNP [dm3] 2R_23147343_SNP [dm6]	G	A	8.889e^-5	0.548	INTERGENIC
X	13401808	X_13401808_SNP [dm3] X_13507775_SNP [dm6]	G	A	8.892e^-5	0.548	INTRON Neto
2L	14713504	2L_14713504_DEL [dm3] 2L_14713504_DEL [dm6]	TT	T	8.951e^-5	0.548	UPSTREAM CG34165 DOWNSTREAM CG15282 INTERGENIC
3R	21053272	3R_21053272_SNP [dm3] 3R_25227550_SNP [dm6]	T	A	8.968e^-5	0.548	INTRON Cad96Cb
X	3245234	X_3245234_SNP [dm3] X_3351201_SNP [dm6]	T	C	8.971e^-5	0.548	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17897293	X_17897293_INS [dm3] X_18003260_INS [dm6]	C	CCA	8.990e^-5	0.548	INTRON Sh
3R	20417540	3R_20417540_SNP [dm3] 3R_24591818_SNP [dm6]	C	G	8.996e^-5	0.548	INTRON mld	TF binding site BDTNP1_TFBS_dl
3L	13784856	3L_13784856_SNP [dm3] 3L_13791756_SNP [dm6]	G	A	9.077e^-5	0.548	INTRON bru-3
3R	19897367	3R_19897367_SNP [dm3] 3R_24071645_SNP [dm6]	C	A	9.087e^-5	0.548	INTRON 4EHP
2L	4972393	2L_4972393_SNP [dm3] 2L_4972393_SNP [dm6]	A	C	9.113e^-5	0.548	SYNONYMOUS_CODING CG14043 UPSTREAM l_2_05714 INTRON l_2_05714	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
3L	10514499	3L_10514499_SNP [dm3] 3L_10521399_SNP [dm6]	A	G	9.130e^-5	0.548	INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	12866290	X_12866290_SNP [dm3] X_12972257_SNP [dm6]	A	T	9.163e^-5	0.548	SYNONYMOUS_CODING CG15721 INTRON CR43636
3R	23604446	3R_23604446_SNP [dm3] 3R_27778724_SNP [dm6]	C	T	9.166e^-5	0.548	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3R	20014875	3R_20014875_SNP [dm3] 3R_24189153_SNP [dm6]	G	T	9.168e^-5	0.548	SYNONYMOUS_CODING jnj UPSTREAM CG5515	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25567534	3R_25567534_SNP [dm3] 3R_29741812_SNP [dm6]	C	T	9.222e^-5	0.548	UTR_3_PRIME CG1969 DOWNSTREAM CG7609
X	21254941	X_21254941_SNP [dm3] X_21383914_SNP [dm6]	A	G	9.260e^-5	0.548	UTR_3_PRIME slgA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4376227	X_4376227_SNP [dm3] X_4482194_SNP [dm6]	T	C	9.313e^-5	0.548	SYNONYMOUS_CODING bi INTRON CR32773
3R	14731203	3R_14731203_SNP [dm3] 3R_18905481_SNP [dm6]	A	T	9.390e^-5	0.548	INTRON CG14292	TF binding site BDTNP1_TFBS_dl
3R	19785566	3R_19785566_SNP [dm3] 3R_23959844_SNP [dm6]	T	C	9.423e^-5	0.548	INTRON AP-1sigma
3L	10398228	3L_10398228_SNP [dm3] 3L_10405128_SNP [dm6]	T	C	9.432e^-5	0.548	INTERGENIC
3L	10648820	3L_10648820_SNP [dm3] 3L_10655720_SNP [dm6]	A	G	9.446e^-5	0.548	INTRON CG32066
3R	3980603	3R_3980603_SNP [dm3] 3R_8154881_SNP [dm6]	C	A	9.446e^-5	0.548	INTRON grn
3R	25376031	3R_25376031_DEL [dm3] 3R_29550309_DEL [dm6]	TGGATACGCGGCGATATGCG...	T	9.485e^-5	0.548	INTERGENIC
3R	17226868	3R_17226868_SNP [dm3] 3R_21401146_SNP [dm6]	T	G	9.520e^-5	0.548	UPSTREAM CG43311 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	10722446	2R_10722446_SNP [dm3] 2R_14834941_SNP [dm6]	C	T	9.540e^-5	0.548	DOWNSTREAM CG10205 INTERGENIC
2R	6999812	2R_6999812_SNP [dm3] 2R_11112307_SNP [dm6]	A	G	9.564e^-5	0.548	INTRON luna
3R	20313380	3R_20313380_SNP [dm3] 3R_24487658_SNP [dm6]	C	G	9.578e^-5	0.548	UPSTREAM mir-1017 INTRON nAChRalpha2
3R	20335030	3R_20335030_SNP [dm3] 3R_24509308_SNP [dm6]	A	G	9.578e^-5	0.548	UTR_3_PRIME nAChRbeta2
3R	20413503	3R_20413503_SNP [dm3] 3R_24587781_SNP [dm6]	T	C	9.578e^-5	0.548	INTRON mld	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	24159421	3R_24159421_SNP [dm3] 3R_28333699_SNP [dm6]	G	T	9.587e^-5	0.548	INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12562635	2R_12562635_SNP [dm3] 2R_16675130_SNP [dm6]	T	C	9.590e^-5	0.548	INTRON CG30463
3R	24173202	3R_24173202_SNP [dm3] 3R_28347480_SNP [dm6]	G	T	9.652e^-5	0.548	INTERGENIC
3L	14075433	3L_14075433_SNP [dm3] 3L_14082333_SNP [dm6]	G	A	9.676e^-5	0.548	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11543092	3R_11543092_SNP [dm3] 3R_15717370_SNP [dm6]	G	T	9.695e^-5	0.548	UPSTREAM CG31294 INTERGENIC
2R	15107370	2R_15107370_SNP [dm3] 2R_19219865_SNP [dm6]	C	T	9.716e^-5	0.548	INTRON hppy
3R	21030869	3R_21030869_SNP [dm3] 3R_25205147_SNP [dm6]	C	T	9.739e^-5	0.548	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
3R	20394682	3R_20394682_SNP [dm3] 3R_24568960_SNP [dm6]	G	A	9.743e^-5	0.548	INTRON CG13624	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	9226084	X_9226084_SNP [dm3] X_9332051_SNP [dm6]	A	G	9.760e^-5	0.548	INTRON CG34449
X	4956410	X_4956410_SNP [dm3] X_5062377_SNP [dm6]	G	A	9.773e^-5	0.548	INTRON CR44833 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	24149270	3R_24149270_DEL [dm3] 3R_28323548_DEL [dm6]	GTAATG	G	9.780e^-5	0.548	INTRON larp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19034513	2R_19034513_SNP [dm3] 2R_23146990_SNP [dm6]	A	C	9.897e^-5	0.548	INTERGENIC	TF binding site mE1_TFBS_sbb
X	12866305	X_12866305_SNP [dm3] X_12972272_SNP [dm6]	A	C	9.926e^-5	0.548	SYNONYMOUS_CODING CG15721 INTRON CR43636
X	17897208	X_17897208_SNP [dm3] X_18003175_SNP [dm6]	A	G	1.001e^-4	0.548	INTRON Sh
2L	11145088	2L_11145088_SNP [dm3] 2L_11145088_SNP [dm6]	A	G	1.004e^-4	0.548	NON_SYNONYMOUS_CODING CG31867 INTRON Gyc32E
X	10012633	X_10012633_SNP [dm3] X_10118600_SNP [dm6]	T	G	1.004e^-4	0.548	INTRON RhoU & 1 other
3L	1564689	3L_1564689_SNP [dm3] 3L_1564689_SNP [dm6]	T	C	1.007e^-4	0.548	UPSTREAM CG12003 INTRON CG7879
2R	12865025	2R_12865025_SNP [dm3] 2R_16977520_SNP [dm6]	A	T	1.008e^-4	0.548	INTRON Cbp53E
2R	12865027	2R_12865027_SNP [dm3] 2R_16977522_SNP [dm6]	A	T	1.008e^-4	0.548	INTRON Cbp53E
2R	13766733	2R_13766733_SNP [dm3] 2R_17879228_SNP [dm6]	T	G	1.011e^-4	0.548	SYNONYMOUS_CODING CG30325 DOWNSTREAM CG30110 INTRON Elk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
4	603065	4_603065_SNP [dm3] 4_582439_SNP [dm6]	A	C	1.012e^-4	0.548	UPSTREAM CG1909 INTERGENIC	transposable element FlyBase
3R	19860791	3R_19860791_SNP [dm3] 3R_24035069_SNP [dm6]	G	A	1.017e^-4	0.548	DOWNSTREAM Ime4 INTRON Miro
2L	15953972	2L_15953972_SNP [dm3] 2L_15953972_SNP [dm6]	T	C	1.017e^-4	0.548	INTRON beat-Ib
3R	15008199	3R_15008199_SNP [dm3] 3R_19182477_SNP [dm6]	C	T	1.018e^-4	0.548	INTRON CG31475
2L	12340567	2L_12340567_SNP [dm3] 2L_12340567_SNP [dm6]	T	C	1.018e^-4	0.548	INTERGENIC
2R	951888	2R_951888_SNP [dm3] 2R_5064383_SNP [dm6]	A	G	1.020e^-4	0.548	DOWNSTREAM TpnC41C INTERGENIC
3R	26476626	3R_26476626_SNP [dm3] 3R_30650904_SNP [dm6]	G	A	1.031e^-4	0.548	DOWNSTREAM CG34433 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11303986	3R_11303986_SNP [dm3] 3R_15478264_SNP [dm6]	C	G	1.031e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10543829	3L_10543829_SNP [dm3] 3L_10550729_SNP [dm6]	G	T	1.037e^-4	0.548	INTRON A2bp1
3R	20349248	3R_20349248_SNP [dm3] 3R_24523526_SNP [dm6]	A	G	1.041e^-4	0.548	UTR_5_PRIME CG13622	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10648717	3L_10648717_SNP [dm3] 3L_10655617_SNP [dm6]	T	A	1.043e^-4	0.548	INTRON CG32066
3R	24047765	3R_24047765_SNP [dm3] 3R_28222043_SNP [dm6]	C	T	1.044e^-4	0.548	INTRON CG34354
3L	12642854	3L_12642854_SNP [dm3] 3L_12649754_SNP [dm6]	G	A	1.045e^-4	0.548	EXON CR43431	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	24141481	3R_24141481_SNP [dm3] 3R_28315759_SNP [dm6]	G	A	1.047e^-4	0.548	INTERGENIC
3L	10544017	3L_10544017_SNP [dm3] 3L_10550917_SNP [dm6]	A	C	1.047e^-4	0.548	INTRON A2bp1
3R	20402740	3R_20402740_INS [dm3] 3R_24577018_INS [dm6]	T	TTTGGCT	1.049e^-4	0.548	INTRON CG13624
3R	14912831	3R_14912831_SNP [dm3] 3R_19087109_SNP [dm6]	C	T	1.052e^-4	0.548	INTRON cdi	TF binding site mE1_TFBS_chinmo
3R	20326756	3R_20326756_SNP [dm3] 3R_24501034_SNP [dm6]	C	G	1.066e^-4	0.552	INTERGENIC
3R	24026052	3R_24026052_SNP [dm3] 3R_28200330_SNP [dm6]	A	T	1.069e^-4	0.552	INTRON CG34354
3R	24130143	3R_24130143_SNP [dm3] 3R_28304421_SNP [dm6]	C	A	1.071e^-4	0.552	NON_SYNONYMOUS_CODING CG12516
2L	15058700	2L_15058700_DEL [dm3] 2L_15058700_DEL [dm6]	ATATTAA	A	1.076e^-4	0.552	UPSTREAM ck DOWNSTREAM TfIIS INTRON CG33679	TF binding site BDTNP1_TFBS_dl
3R	20305603	3R_20305603_SNP [dm3] 3R_24479881_SNP [dm6]	C	A	1.079e^-4	0.552	INTERGENIC
3R	20174311	3R_20174311_SNP [dm3] 3R_24348589_SNP [dm6]	C	A	1.082e^-4	0.552	UTR_5_PRIME CG5746 UPSTREAM CG6454 INTRON CG5746	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17897215	X_17897215_SNP [dm3] X_18003182_SNP [dm6]	C	T	1.087e^-4	0.552	INTRON Sh
X	4376305	X_4376305_SNP [dm3] X_4482272_SNP [dm6]	T	C	1.091e^-4	0.552	SYNONYMOUS_CODING bi INTRON CR32773
X	4572235	X_4572235_SNP [dm3] X_4678202_SNP [dm6]	C	A	1.095e^-4	0.552	UPSTREAM rap INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8571405	2R_8571405_SNP [dm3] 2R_12683900_SNP [dm6]	C	T	1.095e^-4	0.552	SYNONYMOUS_CODING CG8771
3L	12643079	3L_12643079_SNP [dm3] 3L_12649979_SNP [dm6]	G	A	1.097e^-4	0.552	EXON CR43431	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
3R	20372316	3R_20372316_SNP [dm3] 3R_24546594_SNP [dm6]	G	A	1.100e^-4	0.552	INTRON Esyt2
3R	25152618	3R_25152618_DEL [dm3] 3R_29326896_DEL [dm6]	GG	G	1.100e^-4	0.552	INTERGENIC
3R	26018388	3R_26018388_SNP [dm3] 3R_30192666_SNP [dm6]	T	C	1.104e^-4	0.552	INTERGENIC
X	13399845	X_13399845_SNP [dm3] X_13505812_SNP [dm6]	A	T	1.108e^-4	0.552	INTRON Neto
3R	20336506	3R_20336506_SNP [dm3] 3R_24510784_SNP [dm6]	A	T	1.110e^-4	0.552	INTRON nAChRbeta2
2R	9568124	2R_9568124_SNP [dm3] 2R_13680619_SNP [dm6]	A	C	1.111e^-4	0.552	INTRON fas
2R	18117876	2R_18117876_SNP [dm3] 2R_22230371_SNP [dm6]	A	C	1.114e^-4	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	5363353	3R_5363353_SNP [dm3] 3R_9537631_SNP [dm6]	T	C	1.120e^-4	0.552	UTR_3_PRIME mura DOWNSTREAM mura
3R	14626995	3R_14626995_SNP [dm3] 3R_18801273_SNP [dm6]	C	A	1.124e^-4	0.552	UTR_3_PRIME CG18208
4	1048713	4_1048713_SNP [dm3] 4_1028087_SNP [dm6]	C	T	1.126e^-4	0.552	UPSTREAM PlexA & 1 other DOWNSTREAM CG11077 INTRON CR44031	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24032256	3R_24032256_SNP [dm3] 3R_28206534_SNP [dm6]	G	T	1.130e^-4	0.552	INTRON CG34354
3R	14134716	3R_14134716_SNP [dm3] 3R_18308994_SNP [dm6]	G	A	1.130e^-4	0.552	SYNONYMOUS_CODING PKD
3R	11543079	3R_11543079_SNP [dm3] 3R_15717357_SNP [dm6]	T	C	1.134e^-4	0.552	UPSTREAM CG31294 INTERGENIC
3R	26476630	3R_26476630_SNP [dm3] 3R_30650908_SNP [dm6]	C	T	1.134e^-4	0.552	DOWNSTREAM CG34433 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5685979	2L_5685979_SNP [dm3] 2L_5685979_SNP [dm6]	T	G	1.138e^-4	0.552	INTERGENIC
2R	18226209	2R_18226209_SNP [dm3] 2R_22338704_SNP [dm6]	A	G	1.138e^-4	0.552	INTRON Liprin-gamma
3R	20368380	3R_20368380_SNP [dm3] 3R_24542658_SNP [dm6]	C	T	1.147e^-4	0.554	INTRON CG5789
4	530463	4_530463_DEL [dm3] 4_509837_DEL [dm6]	AC	A	1.149e^-4	0.554	INTRON zfh2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11049033	2R_11049033_SNP [dm3] 2R_15161528_SNP [dm6]	C	A	1.153e^-4	0.554	INTRON igl
3R	4708088	3R_4708088_SNP [dm3] 3R_8882366_SNP [dm6]	A	T	1.158e^-4	0.555	INTRON pyd
3R	24048256	3R_24048256_DEL [dm3] 3R_28222534_DEL [dm6]	CACGCCGCCC	C	1.163e^-4	0.557	INTRON CG34354
X	17906286	X_17906286_SNP [dm3] X_18012253_SNP [dm6]	A	C	1.166e^-4	0.557	INTRON Sh
3R	21038015	3R_21038015_SNP [dm3] 3R_25212293_SNP [dm6]	C	T	1.189e^-4	0.559	SYNONYMOUS_CODING CG13654	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	952885	2R_952885_SNP [dm3] 2R_5065380_SNP [dm6]	C	G	1.190e^-4	0.559	UTR_3_PRIME TpnC41C DOWNSTREAM TpnC41C
4	1122347	4_1122347_SNP [dm3] 4_1101721_SNP [dm6]	A	T	1.192e^-4	0.559	INTRON sv
3R	20077989	3R_20077989_SNP [dm3] 3R_24252267_SNP [dm6]	G	A	1.192e^-4	0.559	SYNONYMOUS_CODING CG5706 DOWNSTREAM jar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	11979897	2R_11979897_SNP [dm3] 2R_16092392_SNP [dm6]	C	T	1.193e^-4	0.559	INTRON Dg	TF binding site mE1_TFBS_HSA
2R	19100163	2R_19100163_SNP [dm3] 2R_23212640_SNP [dm6]	A	G	1.193e^-4	0.559	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	19738897	3R_19738897_SNP [dm3] 3R_23913175_SNP [dm6]	A	G	1.194e^-4	0.559	INTRON sba
3L	17334115	3L_17334115_SNP [dm3] 3L_17341015_SNP [dm6]	T	A	1.196e^-4	0.559	NON_SYNONYMOUS_CODING CG13727	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15846724	3R_15846724_SNP [dm3] 3R_20021002_SNP [dm6]	G	T	1.204e^-4	0.562	UTR_5_PRIME CG4433 UPSTREAM psidin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	16160310	3R_16160310_SNP [dm3] 3R_20334588_SNP [dm6]	T	C	1.215e^-4	0.564	INTERGENIC
3L	2019760	3L_2019760_SNP [dm3] 3L_2019760_SNP [dm6]	C	T	1.215e^-4	0.564	DOWNSTREAM CG42357 INTERGENIC
3R	23601918	3R_23601918_SNP [dm3] 3R_27776196_SNP [dm6]	G	A	1.219e^-4	0.564	INTRON CG34353	TF binding site mE1_TFBS_chinmo
X	17897040	X_17897040_SNP [dm3] X_18003007_SNP [dm6]	T	A	1.220e^-4	0.564	INTRON Sh
X	10313530	X_10313530_MNP [dm3] X_10419497_MNP [dm6]	ACA	GTT	1.224e^-4	0.564	INTRON CG32683
3L	16422443	3L_16422443_SNP [dm3] 3L_16429343_SNP [dm6]	G	A	1.235e^-4	0.566	INTRON CG33158 & 1 other
2L	15093108	2L_15093108_SNP [dm3] 2L_15093108_SNP [dm6]	C	T	1.235e^-4	0.566	INTRON CG15270
3R	20287570	3R_20287570_SNP [dm3] 3R_24461848_SNP [dm6]	T	A	1.244e^-4	0.567	INTERGENIC
X	7496107	X_7496107_SNP [dm3] X_7602074_SNP [dm6]	A	T	1.246e^-4	0.567	INTERGENIC	regulatory region REDfly_CRMs
3R	11543078	3R_11543078_SNP [dm3] 3R_15717356_SNP [dm6]	T	C	1.246e^-4	0.567	UPSTREAM CG31294 INTERGENIC
X	13403469	X_13403469_SNP [dm3] X_13509436_SNP [dm6]	G	A	1.249e^-4	0.567	INTRON Neto
2R	17087207	2R_17087207_SNP [dm3] 2R_21199702_SNP [dm6]	C	G	1.269e^-4	0.57	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	25546507	3R_25546507_SNP [dm3] 3R_29720785_SNP [dm6]	A	G	1.271e^-4	0.57	INTRON CG15506
3R	20400761	3R_20400761_SNP [dm3] 3R_24575039_SNP [dm6]	A	G	1.272e^-4	0.57	INTRON CG13624	TF binding site mE1_TFBS_HSA
2L	16739484	2L_16739484_SNP [dm3] 2L_16739484_SNP [dm6]	C	T	1.275e^-4	0.57	INTRON ChLD3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7004543	2R_7004543_SNP [dm3] 2R_11117038_SNP [dm6]	A	G	1.275e^-4	0.57	UPSTREAM luna DOWNSTREAM Cyp12d1-p INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12523322	3L_12523322_SNP [dm3] 3L_12530222_SNP [dm6]	C	T	1.278e^-4	0.57	UPSTREAM nst DOWNSTREAM Tsf2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26039783	3R_26039783_SNP [dm3] 3R_30214061_SNP [dm6]	A	C	1.279e^-4	0.57	UPSTREAM CecB DOWNSTREAM Cec2 INTERGENIC
3L	9949720	3L_9949720_SNP [dm3] 3L_9956620_SNP [dm6]	T	C	1.282e^-4	0.57	INTRON CG34356
3R	21518256	3R_21518256_SNP [dm3] 3R_25692534_SNP [dm6]	G	C	1.287e^-4	0.57	INTERGENIC
3R	14790794	3R_14790794_SNP [dm3] 3R_18965072_SNP [dm6]	T	G	1.287e^-4	0.57	INTRON CG42613 & 1 other
3R	11398167	3R_11398167_SNP [dm3] 3R_15572445_SNP [dm6]	C	T	1.290e^-4	0.57	INTERGENIC
2R	15662800	2R_15662800_SNP [dm3] 2R_19775295_SNP [dm6]	G	C	1.297e^-4	0.571	INTERGENIC
3R	19970677	3R_19970677_SNP [dm3] 3R_24144955_SNP [dm6]	T	A	1.297e^-4	0.571	INTRON Kal1	TF binding site mE1_TFBS_chinmo
3R	13188165	3R_13188165_SNP [dm3] 3R_17362443_SNP [dm6]	G	T	1.301e^-4	0.571	INTRON beat-IIa
2R	9850591	2R_9850591_SNP [dm3] 2R_13963086_SNP [dm6]	T	A	1.310e^-4	0.573	INTRON Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	21050787	2R_21050787_SNP [dm3] 2R_25163264_SNP [dm6]	C	T	1.322e^-4	0.573	INTERGENIC
X	17901718	X_17901718_SNP [dm3] X_18007685_SNP [dm6]	C	T	1.322e^-4	0.573	UPSTREAM CG12672 INTRON Sh
3L	16489156	3L_16489156_SNP [dm3] 3L_16496056_SNP [dm6]	G	A	1.323e^-4	0.573	UTR_5_PRIME CG42514 UPSTREAM CG42514 INTRON CG33158 & 2 others
3L	9836594	3L_9836594_SNP [dm3] 3L_9843494_SNP [dm6]	G	T	1.323e^-4	0.573	SPLICE_SITE_REGION RasGAP1 INTRON RasGAP1
2R	15593447	2R_15593447_SNP [dm3] 2R_19705942_SNP [dm6]	G	A	1.325e^-4	0.573	INTERGENIC	regulatory region REDfly_CRMs
3R	19993440	3R_19993440_SNP [dm3] 3R_24167718_SNP [dm6]	G	T	1.327e^-4	0.573	UTR_3_PRIME Apc2 & 1 other
3R	27066608	3R_27066608_SNP [dm3] 3R_31240886_SNP [dm6]	A	C	1.328e^-4	0.573	INTRON qless
3R	20185837	3R_20185837_SNP [dm3] 3R_24360115_SNP [dm6]	G	A	1.337e^-4	0.575	START_GAINED CG18528 UTR_5_PRIME CG18528 DOWNSTREAM CG5762	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2R	17098497	2R_17098497_SNP [dm3] 2R_21210992_SNP [dm6]	A	G	1.343e^-4	0.576	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
2R	10520804	2R_10520804_SNP [dm3] 2R_14633299_SNP [dm6]	C	G	1.353e^-4	0.576	INTERGENIC
X	3245227	X_3245227_SNP [dm3] X_3351194_SNP [dm6]	T	A	1.357e^-4	0.576	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11777281	3L_11777281_SNP [dm3] 3L_11784181_SNP [dm6]	G	A	1.362e^-4	0.576	SYNONYMOUS_CODING Pi3K68D
3R	19500316	3R_19500316_SNP [dm3] 3R_23674594_SNP [dm6]	A	C	1.364e^-4	0.576	INTERGENIC	TF binding site mE1_TFBS_inv
X	12730510	X_12730510_SNP [dm3] X_12836477_SNP [dm6]	C	A	1.371e^-4	0.576	INTRON Pde9
3R	26615815	3R_26615815_SNP [dm3] 3R_30790093_SNP [dm6]	C	T	1.377e^-4	0.576	UTR_3_PRIME wts DOWNSTREAM zfh1
3R	19472645	3R_19472645_SNP [dm3] 3R_23646923_SNP [dm6]	G	C	1.379e^-4	0.576	INTRON CG31145
3L	14075463	3L_14075463_SNP [dm3] 3L_14082363_SNP [dm6]	C	T	1.381e^-4	0.576	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12056137	2R_12056137_SNP [dm3] 2R_16168632_SNP [dm6]	A	T	1.386e^-4	0.576	NON_SYNONYMOUS_CODING lbk DOWNSTREAM CG8435	TF binding site mE1_TFBS_cad
3R	26067958	3R_26067958_SNP [dm3] 3R_30242236_SNP [dm6]	G	A	1.388e^-4	0.576	SYNONYMOUS_CODING CG9737
2L	10892902	2L_10892902_SNP [dm3] 2L_10892902_SNP [dm6]	T	G	1.391e^-4	0.576	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
3R	19854691	3R_19854691_SNP [dm3] 3R_24028969_SNP [dm6]	T	C	1.395e^-4	0.576	INTRON KrT95D
3R	20334395	3R_20334395_SNP [dm3] 3R_24508673_SNP [dm6]	A	G	1.396e^-4	0.576	DOWNSTREAM nAChRbeta2 INTERGENIC
3R	20425194	3R_20425194_SNP [dm3] 3R_24599472_SNP [dm6]	C	T	1.399e^-4	0.576	INTRON mld	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	24126514	3R_24126514_SNP [dm3] 3R_28300792_SNP [dm6]	C	A	1.404e^-4	0.576	INTERGENIC
2R	6994881	2R_6994881_INS [dm3] 2R_11107376_INS [dm6]	T	TTT	1.408e^-4	0.576	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	5613189	2L_5613189_SNP [dm3] 2L_5613189_SNP [dm6]	T	C	1.409e^-4	0.576	INTRON CG14010
3R	26359251	3R_26359251_SNP [dm3] 3R_30533529_SNP [dm6]	G	A	1.412e^-4	0.576	INTRON tmod
3R	2228035	3R_2228035_SNP [dm3] 3R_6402313_SNP [dm6]	T	C	1.418e^-4	0.576	INTRON Dmtn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17300685	X_17300685_SNP [dm3] X_17406652_SNP [dm6]	A	T	1.419e^-4	0.576	INTERGENIC
3L	6970227	3L_6970227_SNP [dm3] 3L_6977127_SNP [dm6]	C	T	1.423e^-4	0.576	INTRON Galphai & 1 other	TF binding site BDTNP1_TFBS_dl
3R	20026811	3R_20026811_SNP [dm3] 3R_24201089_SNP [dm6]	T	C	1.431e^-4	0.576	UPSTREAM twin INTRON twin
2R	12562628	2R_12562628_SNP [dm3] 2R_16675123_SNP [dm6]	T	C	1.432e^-4	0.576	INTRON CG30463
2R	17802824	2R_17802824_SNP [dm3] 2R_21915319_SNP [dm6]	G	T	1.434e^-4	0.576	INTRON Fili
3R	5388500	3R_5388500_SNP [dm3] 3R_9562778_SNP [dm6]	T	C	1.435e^-4	0.576	INTRON CG9393	TF binding site mE1_TFBS_inv
X	16890694	X_16890694_SNP [dm3] X_16996661_SNP [dm6]	G	C	1.437e^-4	0.576	INTRON CG45002
3R	20330376	3R_20330376_SNP [dm3] 3R_24504654_SNP [dm6]	T	C	1.438e^-4	0.576	INTERGENIC
2L	9010976	2L_9010976_SNP [dm3] 2L_9010976_SNP [dm6]	T	C	1.439e^-4	0.576	INTRON CG9568
X	9226726	X_9226726_SNP [dm3] X_9332693_SNP [dm6]	A	C	1.440e^-4	0.576	SYNONYMOUS_CODING CG34449 INTRON CG34449
3L	14051420	3L_14051420_SNP [dm3] 3L_14058320_SNP [dm6]	T	C	1.440e^-4	0.576	INTRON CG32138
3R	19061782	3R_19061782_SNP [dm3] 3R_23236060_SNP [dm6]	C	G	1.444e^-4	0.576	INTRON CG4467
2L	12464315	2L_12464315_SNP [dm3] 2L_12464315_SNP [dm6]	A	C	1.449e^-4	0.576	INTRON bun
3R	7599426	3R_7599426_SNP [dm3] 3R_11773704_SNP [dm6]	T	C	1.455e^-4	0.576	UPSTREAM l_3_neo38 INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26352913	3R_26352913_SNP [dm3] 3R_30527191_SNP [dm6]	T	A	1.458e^-4	0.576	UPSTREAM jdp INTERGENIC
3R	24168281	3R_24168281_SNP [dm3] 3R_28342559_SNP [dm6]	G	A	1.459e^-4	0.576	NON_SYNONYMOUS_CODING Moca-cyp UTR_5_PRIME Moca-cyp	TF binding site mE1_TFBS_cad
2R	10700192	2R_10700192_SNP [dm3] 2R_14812687_SNP [dm6]	G	C	1.471e^-4	0.576	INTERGENIC	regulatory region REDfly_CRMs
3R	13683661	3R_13683661_SNP [dm3] 3R_17857939_SNP [dm6]	T	C	1.489e^-4	0.576	SYNONYMOUS_CODING tinc
3L	10357630	3L_10357630_SNP [dm3] 3L_10364530_SNP [dm6]	A	G	1.494e^-4	0.576	UPSTREAM CR44327 & 1 other EXON CR44327	TF binding site BDTNP1_TFBS_dl
3L	461631	3L_461631_SNP [dm3] 3L_461631_SNP [dm6]	C	G	1.495e^-4	0.576	INTRON klar
3R	20330740	3R_20330740_SNP [dm3] 3R_24505018_SNP [dm6]	A	T	1.500e^-4	0.576	INTERGENIC
3R	7599511	3R_7599511_SNP [dm3] 3R_11773789_SNP [dm6]	C	T	1.503e^-4	0.576	UPSTREAM l_3_neo38 INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14053052	2R_14053052_SNP [dm3] 2R_18165547_SNP [dm6]	T	C	1.507e^-4	0.576	SYNONYMOUS_CODING Nup75 DOWNSTREAM CG10915
2R	14053073	2R_14053073_SNP [dm3] 2R_18165568_SNP [dm6]	C	T	1.507e^-4	0.576	SYNONYMOUS_CODING Nup75 DOWNSTREAM CG10915
3R	26352105	3R_26352105_SNP [dm3] 3R_30526383_SNP [dm6]	G	C	1.511e^-4	0.576	SPLICE_SITE_REGION jdp INTRON jdp
X	3319125	X_3319125_SNP [dm3] X_3425092_SNP [dm6]	T	C	1.517e^-4	0.576	INTRON CR44999 & 1 other
3R	25806184	3R_25806184_SNP [dm3] 3R_29980462_SNP [dm6]	A	C	1.520e^-4	0.576	INTERGENIC	TF binding site mE1_TFBS_HSA
X	3245219	X_3245219_SNP [dm3] X_3351186_SNP [dm6]	A	G	1.521e^-4	0.576	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20933054	3R_20933054_SNP [dm3] 3R_25107332_SNP [dm6]	A	G	1.527e^-4	0.576	SYNONYMOUS_CODING CG34027
2L	4691180	2L_4691180_SNP [dm3] 2L_4691180_SNP [dm6]	G	T	1.531e^-4	0.576	UPSTREAM CG3251 INTERGENIC
3L	13751350	3L_13751350_SNP [dm3] 3L_13758250_SNP [dm6]	C	T	1.534e^-4	0.576	INTRON bru-3
3R	21949798	3R_21949798_SNP [dm3] 3R_26124076_SNP [dm6]	T	C	1.545e^-4	0.576	INTRON CG31324
3R	25551430	3R_25551430_SNP [dm3] 3R_29725708_SNP [dm6]	C	A	1.548e^-4	0.576	UPSTREAM Kul & 1 other DOWNSTREAM CG18731 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7007374	2R_7007374_SNP [dm3] 2R_11119869_SNP [dm6]	C	T	1.552e^-4	0.576	UTR_3_PRIME Cyp12d1-p DOWNSTREAM Cyp12d1-p
3R	21043101	3R_21043101_SNP [dm3] 3R_25217379_SNP [dm6]	T	C	1.563e^-4	0.576	INTRON CG31106
2R	17087208	2R_17087208_SNP [dm3] 2R_21199703_SNP [dm6]	C	G	1.564e^-4	0.576	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	17098683	2R_17098683_SNP [dm3] 2R_21211178_SNP [dm6]	G	A	1.571e^-4	0.576	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
2L	13688217	2L_13688217_SNP [dm3] 2L_13688217_SNP [dm6]	G	A	1.571e^-4	0.576	INTRON CG31814
3R	20446159	3R_20446159_SNP [dm3] 3R_24620437_SNP [dm6]	G	T	1.573e^-4	0.576	SYNONYMOUS_CODING mld	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7577619	3R_7577619_SNP [dm3] 3R_11751897_SNP [dm6]	A	C	1.574e^-4	0.576	UTR_3_PRIME Lk6 DOWNSTREAM CG43062 & 1 other
2R	10862986	2R_10862986_SNP [dm3] 2R_14975481_SNP [dm6]	C	T	1.576e^-4	0.576	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7535848	3L_7535848_SNP [dm3] 3L_7542748_SNP [dm6]	A	G	1.577e^-4	0.576	UPSTREAM CG32376 INTERGENIC
X	3889229	X_3889229_DEL [dm3] X_3995196_DEL [dm6]	GG	G	1.585e^-4	0.576	INTERGENIC
2R	3677843	2R_3677843_SNP [dm3] 2R_7790338_SNP [dm6]	A	G	1.588e^-4	0.576	UPSTREAM CG12824 DOWNSTREAM CG12825 INTERGENIC
3R	13721836	3R_13721836_SNP [dm3] 3R_17896114_SNP [dm6]	A	G	1.592e^-4	0.576	INTRON Rim	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3383322	3L_3383322_SNP [dm3] 3L_3383322_SNP [dm6]	C	A	1.594e^-4	0.576	INTERGENIC
2L	4770760	2L_4770760_SNP [dm3] 2L_4770760_SNP [dm6]	A	T	1.595e^-4	0.576	INTRON CG15630
X	6440832	X_6440832_SNP [dm3] X_6546799_SNP [dm6]	G	A	1.596e^-4	0.576	INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6422053	2L_6422053_SNP [dm3] 2L_6422053_SNP [dm6]	C	A	1.597e^-4	0.576	INTRON Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1035901	2L_1035901_SNP [dm3] 2L_1035901_SNP [dm6]	C	T	1.597e^-4	0.576	INTRON IA-2
2R	10226883	2R_10226883_SNP [dm3] 2R_14339378_SNP [dm6]	T	A	1.598e^-4	0.576	INTRON Shroom
2R	19484992	2R_19484992_SNP [dm3] 2R_23597469_SNP [dm6]	G	A	1.601e^-4	0.576	SYNONYMOUS_CODING apt
3R	14671221	3R_14671221_SNP [dm3] 3R_18845499_SNP [dm6]	T	A	1.602e^-4	0.576	INTRON CG18208
3R	21741221	3R_21741221_SNP [dm3] 3R_25915499_SNP [dm6]	T	G	1.602e^-4	0.576	SYNONYMOUS_CODING CG42235 DOWNSTREAM CG42235 INTRON CG42235
3R	24134237	3R_24134237_INS [dm3] 3R_28308515_INS [dm6]	A	AAGCA	1.603e^-4	0.576	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10378430	2L_10378430_SNP [dm3] 2L_10378430_SNP [dm6]	A	C	1.605e^-4	0.576	INTRON dpr19
3R	20371483	3R_20371483_SNP [dm3] 3R_24545761_SNP [dm6]	C	T	1.610e^-4	0.576	INTRON Esyt2
2R	6993044	2R_6993044_DEL [dm3] 2R_11105539_DEL [dm6]	TT	T	1.614e^-4	0.576	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	21060370	3R_21060370_SNP [dm3] 3R_25234648_SNP [dm6]	T	C	1.624e^-4	0.576	SYNONYMOUS_CODING CG10420	TF binding site mE1_TFBS_sens
2R	15129606	2R_15129606_SNP [dm3] 2R_19242101_SNP [dm6]	A	G	1.628e^-4	0.576	INTRON cora
3R	20090492	3R_20090492_DEL [dm3] 3R_24264770_DEL [dm6]	GAG	G	1.628e^-4	0.576	UPSTREAM tRNA:CR31130 INTRON jar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21042982	3R_21042982_SNP [dm3] 3R_25217260_SNP [dm6]	C	T	1.629e^-4	0.576	SYNONYMOUS_CODING CG31106
3R	21136160	3R_21136160_SNP [dm3] 3R_25310438_SNP [dm6]	A	C	1.633e^-4	0.576	NON_SYNONYMOUS_CODING CG31099 DOWNSTREAM CG31087
3R	19740321	3R_19740321_DEL [dm3] 3R_23914599_DEL [dm6]	AT	A	1.637e^-4	0.576	INTRON sba	TF binding site mE1_TFBS_Kr
3R	11543051	3R_11543051_SNP [dm3] 3R_15717329_SNP [dm6]	C	T	1.637e^-4	0.576	UPSTREAM CG31294 INTERGENIC
3R	19182400	3R_19182400_SNP [dm3] 3R_23356678_SNP [dm6]	C	T	1.642e^-4	0.576	SYNONYMOUS_CODING Sec13 UPSTREAM ATPsyn-Cf6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26352406	3R_26352406_SNP [dm3] 3R_30526684_SNP [dm6]	C	A	1.643e^-4	0.576	INTRON jdp
2R	16955921	2R_16955921_SNP [dm3] 2R_21068416_SNP [dm6]	G	A	1.643e^-4	0.576	SYNONYMOUS_CODING Cht9 EXON CR44703	TF binding site mE1_TFBS_cad
2R	18117881	2R_18117881_MNP [dm3] 2R_22230376_MNP [dm6]	AGG	CAC	1.645e^-4	0.576	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20128806	3R_20128806_INS [dm3] 3R_24303084_INS [dm6]	T	TGAG	1.648e^-4	0.576	INTRON crb
2L	2176765	2L_2176765_SNP [dm3] 2L_2176765_SNP [dm6]	A	T	1.649e^-4	0.576	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	17897093	X_17897093_SNP [dm3] X_18003060_SNP [dm6]	T	A	1.649e^-4	0.576	INTRON Sh
3R	14627310	3R_14627310_SNP [dm3] 3R_18801588_SNP [dm6]	A	C	1.651e^-4	0.576	UTR_3_PRIME CG18208
3R	19032493	3R_19032493_SNP [dm3] 3R_23206771_SNP [dm6]	G	T	1.655e^-4	0.576	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	26353298	3R_26353298_SNP [dm3] 3R_30527576_SNP [dm6]	C	A	1.655e^-4	0.576	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
2R	9526014	2R_9526014_SNP [dm3] 2R_13638509_SNP [dm6]	C	T	1.656e^-4	0.576	INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12672057	3L_12672057_SNP [dm3] 3L_12678957_SNP [dm6]	G	C	1.658e^-4	0.576	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	26038965	3R_26038965_SNP [dm3] 3R_30213243_SNP [dm6]	T	A	1.659e^-4	0.576	DOWNSTREAM CecB & 2 others INTERGENIC
3L	10783106	3L_10783106_INS [dm3] 3L_10790006_INS [dm6]	A	ACAAATTCAATTAAAAAAA...	1.660e^-4	0.576	DOWNSTREAM CR44545 INTERGENIC
3L	9180738	3L_9180738_SNP [dm3] 3L_9187638_SNP [dm6]	T	G	1.661e^-4	0.576	INTERGENIC
3R	20307724	3R_20307724_SNP [dm3] 3R_24482002_SNP [dm6]	T	C	1.664e^-4	0.576	INTERGENIC
2R	10133799	2R_10133799_SNP [dm3] 2R_14246294_SNP [dm6]	T	C	1.667e^-4	0.576	UPSTREAM Mdr50 DOWNSTREAM CG8503 INTERGENIC
2R	6372276	2R_6372276_SNP [dm3] 2R_10484771_SNP [dm6]	T	C	1.670e^-4	0.576	START_GAINED pre-lola-G UTR_5_PRIME pre-lola-G INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	13402173	X_13402173_SNP [dm3] X_13508140_SNP [dm6]	C	T	1.672e^-4	0.576	INTRON Neto
3R	20281330	3R_20281330_SNP [dm3] 3R_24455608_SNP [dm6]	G	A	1.672e^-4	0.576	INTRON nAChRalpha1
3R	25552455	3R_25552455_SNP [dm3] 3R_29726733_SNP [dm6]	C	T	1.679e^-4	0.576	INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6994584	2R_6994584_INS [dm3] 2R_11107079_INS [dm6]	A	ACATAC	1.679e^-4	0.576	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15259851	2R_15259851_SNP [dm3] 2R_19372346_SNP [dm6]	C	T	1.679e^-4	0.576	INTRON CG9416	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
X	16428953	X_16428953_SNP [dm3] X_16534920_SNP [dm6]	T	A	1.682e^-4	0.576	INTERGENIC
2R	10133855	2R_10133855_SNP [dm3] 2R_14246350_SNP [dm6]	A	T	1.695e^-4	0.576	UPSTREAM Mdr50 DOWNSTREAM CG8503 INTERGENIC
X	5853580	X_5853580_SNP [dm3] X_5959547_SNP [dm6]	A	G	1.702e^-4	0.576	SYNONYMOUS_CODING fs_1_M3	TF binding site mE1_TFBS_HSA
X	4376329	X_4376329_SNP [dm3] X_4482296_SNP [dm6]	C	T	1.708e^-4	0.576	SYNONYMOUS_CODING bi INTRON CR32773
3R	20159493	3R_20159493_SNP [dm3] 3R_24333771_SNP [dm6]	C	T	1.717e^-4	0.576	SYNONYMOUS_CODING Dis3 UPSTREAM CG5728	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20258038	3R_20258038_SNP [dm3] 3R_24432316_SNP [dm6]	C	T	1.717e^-4	0.576	INTRON nAChRalpha1
X	20571257	X_20571257_SNP [dm3] X_20700230_SNP [dm6]	A	T	1.726e^-4	0.576	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	7762112	3R_7762112_SNP [dm3] 3R_11936390_SNP [dm6]	G	A	1.734e^-4	0.576	INTRON Cad87A
3R	19995931	3R_19995931_SNP [dm3] 3R_24170209_SNP [dm6]	G	T	1.739e^-4	0.576	UPSTREAM CG5510 INTERGENIC
2L	17841653	2L_17841653_SNP [dm3] 2L_17841653_SNP [dm6]	T	C	1.741e^-4	0.576	INTRON CadN2
3R	20128810	3R_20128810_DEL [dm3] 3R_24303088_DEL [dm6]	TTGCGGCCA	T	1.744e^-4	0.576	INTRON crb
3R	20330822	3R_20330822_INS [dm3] 3R_24505100_INS [dm6]	T	TC	1.749e^-4	0.576	INTERGENIC
3R	19850223	3R_19850223_SNP [dm3] 3R_24024501_SNP [dm6]	C	G	1.756e^-4	0.576	INTRON KrT95D	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	3800364	X_3800364_SNP [dm3] X_3906331_SNP [dm6]	A	C	1.757e^-4	0.576	SYNONYMOUS_CODING CG42541	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20333126	3R_20333126_SNP [dm3] 3R_24507404_SNP [dm6]	C	T	1.762e^-4	0.576	INTERGENIC
3R	26359142	3R_26359142_SNP [dm3] 3R_30533420_SNP [dm6]	G	A	1.765e^-4	0.576	SYNONYMOUS_CODING tmod
3R	20051648	3R_20051648_SNP [dm3] 3R_24225926_SNP [dm6]	A	T	1.772e^-4	0.576	NON_SYNONYMOUS_CODING Spps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	2697866	2L_2697866_SNP [dm3] 2L_2697866_SNP [dm6]	G	A	1.772e^-4	0.576	INTRON CG31690
X	12866319	X_12866319_SNP [dm3] X_12972286_SNP [dm6]	T	C	1.777e^-4	0.576	NON_SYNONYMOUS_CODING CG15721 INTRON CR43636
3L	13607424	3L_13607424_SNP [dm3] 3L_13614324_SNP [dm6]	A	C	1.782e^-4	0.576	INTRON bru-3	TF binding site mE1_TFBS_chinmo
3R	11543165	3R_11543165_SNP [dm3] 3R_15717443_SNP [dm6]	A	G	1.783e^-4	0.576	UPSTREAM CG31294 INTERGENIC
3L	15533540	3L_15533540_SNP [dm3] 3L_15540440_SNP [dm6]	A	G	1.783e^-4	0.576	INTRON CrebA
3R	19740238	3R_19740238_SNP [dm3] 3R_23914516_SNP [dm6]	G	A	1.785e^-4	0.576	INTRON sba	TF binding site mE1_TFBS_Kr
3R	24047485	3R_24047485_SNP [dm3] 3R_28221763_SNP [dm6]	C	A	1.786e^-4	0.576	INTRON CG34354
3R	26930915	3R_26930915_SNP [dm3] 3R_31105193_SNP [dm6]	T	C	1.791e^-4	0.576	INTERGENIC
2R	10524140	2R_10524140_SNP [dm3] 2R_14636635_SNP [dm6]	C	T	1.795e^-4	0.576	INTERGENIC
2R	10133813	2R_10133813_SNP [dm3] 2R_14246308_SNP [dm6]	G	A	1.797e^-4	0.576	UPSTREAM Mdr50 DOWNSTREAM CG8503 INTERGENIC
2L	14054482	2L_14054482_SNP [dm3] 2L_14054482_SNP [dm6]	G	T	1.801e^-4	0.576	INTRON nAChRalpha5	TF binding site mE1_TFBS_Trl
2R	16954085	2R_16954085_SNP [dm3] 2R_21066580_SNP [dm6]	T	G	1.804e^-4	0.576	SYNONYMOUS_CODING Cht4	TF binding site mE1_TFBS_cad
2R	10279408	2R_10279408_SNP [dm3] 2R_14391903_SNP [dm6]	G	A	1.805e^-4	0.576	SYNONYMOUS_CODING CG10104	TF binding site mE1_TFBS_cad
3R	24051707	3R_24051707_SNP [dm3] 3R_28225985_SNP [dm6]	A	T	1.809e^-4	0.576	INTRON CG34354	TF binding site mE1_TFBS_HSA
3R	21052784	3R_21052784_SNP [dm3] 3R_25227062_SNP [dm6]	A	C	1.810e^-4	0.576	INTRON Cad96Cb
2R	19657250	2R_19657250_SNP [dm3] 2R_23769727_SNP [dm6]	G	A	1.810e^-4	0.576	INTRON CG9850
2L	11077097	2L_11077097_SNP [dm3] 2L_11077097_SNP [dm6]	T	A	1.812e^-4	0.576	INTRON AstC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	9902549	X_9902549_SNP [dm3] X_10008516_SNP [dm6]	C	T	1.820e^-4	0.576	UPSTREAM CG33557 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14478148	3L_14478148_SNP [dm3] 3L_14485048_SNP [dm6]	T	C	1.820e^-4	0.576	INTRON bbg
2R	16529056	2R_16529056_SNP [dm3] 2R_20641551_SNP [dm6]	T	A	1.821e^-4	0.576	UTR_3_PRIME maf-S UPSTREAM rig & 1 other DOWNSTREAM CG33785 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	5953595	2R_5953595_SNP [dm3] 2R_10066090_SNP [dm6]	A	G	1.824e^-4	0.576	NON_SYNONYMOUS_CODING CG2292 UPSTREAM mRpL42	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3319130	X_3319130_SNP [dm3] X_3425097_SNP [dm6]	A	T	1.824e^-4	0.576	INTRON CR44999 & 1 other
X	10012871	X_10012871_SNP [dm3] X_10118838_SNP [dm6]	C	T	1.825e^-4	0.576	INTRON RhoU & 1 other
2L	10719324	2L_10719324_SNP [dm3] 2L_10719324_SNP [dm6]	C	A	1.834e^-4	0.576	INTERGENIC
X	1486421	X_1486421_SNP [dm3] X_1592388_SNP [dm6]	C	T	1.836e^-4	0.576	INTRON br & 1 other
3R	25376177	3R_25376177_DEL [dm3] 3R_29550455_DEL [dm6]	ACGGGACAATCGTGTGATT...	C	1.836e^-4	0.576	INTERGENIC
3R	25385480	3R_25385480_SNP [dm3] 3R_29559758_SNP [dm6]	G	C	1.836e^-4	0.576	INTRON Dr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	25407647	3R_25407647_SNP [dm3] 3R_29581925_SNP [dm6]	A	G	1.836e^-4	0.576	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25425918	3R_25425918_SNP [dm3] 3R_29600196_SNP [dm6]	A	G	1.836e^-4	0.576	NON_SYNONYMOUS_CODING CG7568 DOWNSTREAM alph INTRON alph
3L	7000931	3L_7000931_SNP [dm3] 3L_7007831_SNP [dm6]	T	A	1.840e^-4	0.576	INTRON Mp
2R	17087653	2R_17087653_SNP [dm3] 2R_21200148_SNP [dm6]	T	C	1.845e^-4	0.576	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	27278005	3R_27278005_SNP [dm3] 3R_31452283_SNP [dm6]	A	C	1.848e^-4	0.576	INTRON Gprk2	TF binding site mE1_TFBS_cad
2R	21050024	2R_21050024_SNP [dm3] 2R_25162501_SNP [dm6]	T	A	1.849e^-4	0.576	INTERGENIC
3L	2031924	3L_2031924_SNP [dm3] 3L_2031924_SNP [dm6]	C	G	1.854e^-4	0.576	INTERGENIC
2L	4690981	2L_4690981_SNP [dm3] 2L_4690981_SNP [dm6]	T	C	1.857e^-4	0.576	UPSTREAM CG3251 INTERGENIC
2R	17617794	2R_17617794_SNP [dm3] 2R_21730289_SNP [dm6]	A	G	1.860e^-4	0.576	INTERGENIC
2R	21085681	2R_21085681_INS [dm3] 2R_25198158_INS [dm6]	T	TT	1.862e^-4	0.576	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25396898	3R_25396898_SNP [dm3] 3R_29571176_SNP [dm6]	G	A	1.863e^-4	0.576	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14194707	3R_14194707_SNP [dm3] 3R_18368985_SNP [dm6]	G	C	1.864e^-4	0.576	UTR_3_PRIME gl INTRON gl
3R	23486869	3R_23486869_SNP [dm3] 3R_27661147_SNP [dm6]	A	T	1.865e^-4	0.576	UPSTREAM Mlc1 INTERGENIC
3R	19528001	3R_19528001_SNP [dm3] 3R_23702279_SNP [dm6]	G	C	1.872e^-4	0.576	UPSTREAM CG31413 INTRON CG31148	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11853731	2R_11853731_SNP [dm3] 2R_15966226_SNP [dm6]	C	T	1.874e^-4	0.576	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5008821	3L_5008821_SNP [dm3] 3L_5008821_SNP [dm6]	G	A	1.874e^-4	0.576	INTRON Con
3L	11118224	3L_11118224_SNP [dm3] 3L_11125124_SNP [dm6]	G	C	1.874e^-4	0.576	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	27490638	3R_27490638_SNP [dm3] 3R_31664916_SNP [dm6]	G	A	1.879e^-4	0.576	DOWNSTREAM kek6 INTERGENIC
3L	14478159	3L_14478159_SNP [dm3] 3L_14485059_SNP [dm6]	T	C	1.884e^-4	0.576	INTRON bbg
3R	25402934	3R_25402934_SNP [dm3] 3R_29577212_SNP [dm6]	C	G	1.885e^-4	0.576	INTERGENIC
2R	12002939	2R_12002939_SNP [dm3] 2R_16115434_SNP [dm6]	T	C	1.885e^-4	0.576	SYNONYMOUS_CODING Asph UTR_3_PRIME Asph
3R	20315318	3R_20315318_SNP [dm3] 3R_24489596_SNP [dm6]	C	T	1.886e^-4	0.576	SPLICE_SITE_REGION nAChRalpha2 DOWNSTREAM mir-1017 INTRON nAChRalpha2
3L	11163008	3L_11163008_SNP [dm3] 3L_11169908_SNP [dm6]	T	C	1.886e^-4	0.576	UTR_5_PRIME CG7616 UPSTREAM CG7616 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	21457268	3R_21457268_SNP [dm3] 3R_25631546_SNP [dm6]	A	T	1.895e^-4	0.576	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	19207339	3R_19207339_SNP [dm3] 3R_23381617_SNP [dm6]	T	G	1.897e^-4	0.576	INTRON CG4393	TF binding site mE1_TFBS_cad
3L	14497724	3L_14497724_SNP [dm3] 3L_14504624_SNP [dm6]	C	A	1.897e^-4	0.576	INTRON bbg
3R	27111741	3R_27111741_SNP [dm3] 3R_31286019_SNP [dm6]	T	G	1.898e^-4	0.576	INTERGENIC
2L	18044654	2L_18044654_DEL [dm3] 2L_18044654_DEL [dm6]	AA	A	1.903e^-4	0.576	INTRON rdo
2R	9386436	2R_9386436_SNP [dm3] 2R_13498931_SNP [dm6]	T	C	1.904e^-4	0.576	INTRON drk
3R	20285998	3R_20285998_SNP [dm3] 3R_24460276_SNP [dm6]	G	A	1.905e^-4	0.576	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	4488775	3R_4488775_SNP [dm3] 3R_8663053_SNP [dm6]	A	T	1.905e^-4	0.576	SPLICE_SITE_REGION p INTRON p	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3R	26352818	3R_26352818_SNP [dm3] 3R_30527096_SNP [dm6]	G	C	1.907e^-4	0.576	UPSTREAM jdp INTERGENIC
4	1118259	4_1118259_SNP [dm3] 4_1097633_SNP [dm6]	C	A	1.908e^-4	0.576	UPSTREAM sv INTRON sv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	12098869	3L_12098869_SNP [dm3] 3L_12105769_SNP [dm6]	G	A	1.918e^-4	0.576	INTERGENIC
2R	13766868	2R_13766868_SNP [dm3] 2R_17879363_SNP [dm6]	A	G	1.920e^-4	0.576	SYNONYMOUS_CODING CG30325 DOWNSTREAM CG30110 INTRON Elk	TF binding site mE1_TFBS_HSA
3R	20233722	3R_20233722_DEL [dm3] 3R_24408000_DEL [dm6]	AGTGGCAGCAGCAACCA...	A	1.921e^-4	0.576	INTRON nAChRalpha1
3R	19970615	3R_19970615_SNP [dm3] 3R_24144893_SNP [dm6]	G	A	1.924e^-4	0.576	INTRON Kal1	TF binding site mE1_TFBS_chinmo
3R	9530386	3R_9530386_SNP [dm3] 3R_13704664_SNP [dm6]	C	T	1.925e^-4	0.576	SYNONYMOUS_CODING Adgf-D
X	17897192	X_17897192_DEL [dm3] X_18003159_DEL [dm6]	AA	A	1.927e^-4	0.576	INTRON Sh
3R	19904873	3R_19904873_SNP [dm3] 3R_24079151_SNP [dm6]	T	C	1.932e^-4	0.576	INTRON 4EHP
3R	1112940	3R_1112940_SNP [dm3] 3R_5287218_SNP [dm6]	A	G	1.936e^-4	0.576	UTR_5_PRIME mtd INTRON mtd
3R	25350189	3R_25350189_SNP [dm3] 3R_29524467_SNP [dm6]	A	C	1.940e^-4	0.576	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	21050741	2R_21050741_SNP [dm3] 2R_25163218_SNP [dm6]	A	C	1.942e^-4	0.576	INTERGENIC
3R	20167806	3R_20167806_SNP [dm3] 3R_24342084_SNP [dm6]	A	T	1.943e^-4	0.576	UPSTREAM Ms INTRON Ms
2R	11848846	2R_11848846_SNP [dm3] 2R_15961341_SNP [dm6]	C	T	1.949e^-4	0.576	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11543106	3R_11543106_SNP [dm3] 3R_15717384_SNP [dm6]	A	T	1.950e^-4	0.576	UPSTREAM CG31294 INTERGENIC
3R	19041861	3R_19041861_SNP [dm3] 3R_23216139_SNP [dm6]	T	C	1.951e^-4	0.576	INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	21049816	2R_21049816_SNP [dm3] 2R_25162293_SNP [dm6]	T	C	1.955e^-4	0.576	INTERGENIC
4	1095464	4_1095464_SNP [dm3] 4_1074838_SNP [dm6]	C	G	1.959e^-4	0.577	NON_SYNONYMOUS_CODING Rfabg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10398246	3L_10398246_SNP [dm3] 3L_10405146_SNP [dm6]	T	C	1.966e^-4	0.578	INTERGENIC
2R	3883214	2R_3883214_SNP [dm3] 2R_7995709_SNP [dm6]	G	A	1.971e^-4	0.578	SYNONYMOUS_CODING Hey UPSTREAM Dic3	TF binding site mE1_TFBS_cad
3R	25350146	3R_25350146_SNP [dm3] 3R_29524424_SNP [dm6]	A	C	1.973e^-4	0.578	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26353062	3R_26353062_SNP [dm3] 3R_30527340_SNP [dm6]	T	G	1.980e^-4	0.578	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3R	26002868	3R_26002868_SNP [dm3] 3R_30177146_SNP [dm6]	G	T	1.980e^-4	0.578	UPSTREAM CG15530 INTRON CG1983
2L	13594737	2L_13594737_SNP [dm3] 2L_13594737_SNP [dm6]	T	G	1.980e^-4	0.578	DOWNSTREAM CG9254 INTRON kuz
3R	18263535	3R_18263535_SNP [dm3] 3R_22437813_SNP [dm6]	G	C	1.985e^-4	0.578	INTERGENIC
3R	26352939	3R_26352939_SNP [dm3] 3R_30527217_SNP [dm6]	G	T	1.987e^-4	0.578	UPSTREAM jdp INTERGENIC
3L	14548334	3L_14548334_SNP [dm3] 3L_14555234_SNP [dm6]	G	T	1.993e^-4	0.579	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	2505582	3L_2505582_SNP [dm3] 3L_2505582_SNP [dm6]	T	G	2.003e^-4	0.579	UTR_3_PRIME Spn DOWNSTREAM Spn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12294024	3L_12294024_SNP [dm3] 3L_12300924_SNP [dm6]	C	G	2.003e^-4	0.579	UPSTREAM CR44550 INTERGENIC
3R	25551689	3R_25551689_SNP [dm3] 3R_29725967_SNP [dm6]	G	A	2.005e^-4	0.579	DOWNSTREAM CG18731 INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24959077	3R_24959077_SNP [dm3] 3R_29133355_SNP [dm6]	C	T	2.005e^-4	0.579	SYNONYMOUS_CODING Vha100-1 INTRON Vha100-1
3L	904908	3L_904908_SNP [dm3] 3L_904908_SNP [dm6]	T	A	2.008e^-4	0.579	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	27150885	3R_27150885_SNP [dm3] 3R_31325163_SNP [dm6]	T	C	2.014e^-4	0.579	INTRON CG34347
X	19073616	X_19073616_SNP [dm3] X_19179583_SNP [dm6]	A	G	2.020e^-4	0.58	SYNONYMOUS_CODING CG7556 UPSTREAM CG7453	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8593000	3L_8593000_SNP [dm3] 3L_8599900_SNP [dm6]	A	G	2.026e^-4	0.581	SYNONYMOUS_CODING Nelf-E DOWNSTREAM CG43078
3L	17468026	3L_17468026_SNP [dm3] 3L_17474926_SNP [dm6]	C	T	2.032e^-4	0.582	UTR_5_PRIME CG7580 UPSTREAM CG7580 DOWNSTREAM CG7589	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad
2R	5666417	2R_5666417_SNP [dm3] 2R_9778912_SNP [dm6]	G	A	2.050e^-4	0.586	INTRON CG1688	TF binding site mE1_TFBS_chinmo
2R	16667474	2R_16667474_INS [dm3] 2R_20779969_INS [dm6]	A	AAG	2.054e^-4	0.586	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC
3R	13297983	3R_13297983_INS [dm3] 3R_17472261_INS [dm6]	T	TT	2.057e^-4	0.586	INTERGENIC
3L	14932543	3L_14932543_SNP [dm3] 3L_14939443_SNP [dm6]	C	T	2.064e^-4	0.587	SYNONYMOUS_CODING DCX-EMAP	TF binding site mE1_TFBS_cad
3R	25574902	3R_25574902_SNP [dm3] 3R_29749180_SNP [dm6]	C	T	2.068e^-4	0.588	UPSTREAM yata & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	12855693	3R_12855693_SNP [dm3] 3R_17029971_SNP [dm6]	A	G	2.076e^-4	0.588	SYNONYMOUS_CODING CG5225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	25464906	3R_25464906_SNP [dm3] 3R_29639184_SNP [dm6]	T	A	2.077e^-4	0.588	INTRON Dop1R2
3R	6502945	3R_6502945_SNP [dm3] 3R_10677223_SNP [dm6]	G	A	2.078e^-4	0.588	UTR_5_PRIME CG6465 DOWNSTREAM CG14688	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	20022643	3R_20022643_SNP [dm3] 3R_24196921_SNP [dm6]	G	A	2.087e^-4	0.588	UTR_3_PRIME twin DOWNSTREAM twin & 1 other
3L	8026278	3L_8026278_SNP [dm3] 3L_8033178_SNP [dm6]	T	C	2.094e^-4	0.588	INTRON nmo
3L	13749183	3L_13749183_SNP [dm3] 3L_13756083_SNP [dm6]	T	C	2.096e^-4	0.588	INTRON bru-3
3R	18389442	3R_18389442_SNP [dm3] 3R_22563720_SNP [dm6]	A	G	2.099e^-4	0.588	INTERGENIC
2L	4691291	2L_4691291_SNP [dm3] 2L_4691291_SNP [dm6]	A	T	2.106e^-4	0.588	UPSTREAM CG3251 INTERGENIC
3L	8669513	3L_8669513_INS [dm3] 3L_8676413_INS [dm6]	C	CC	2.106e^-4	0.588	INTRON h	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9932129	2R_9932129_SNP [dm3] 2R_14044624_SNP [dm6]	A	T	2.112e^-4	0.588	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16428952	X_16428952_SNP [dm3] X_16534919_SNP [dm6]	A	G	2.118e^-4	0.588	INTERGENIC
X	5763413	X_5763413_SNP [dm3] X_5869380_SNP [dm6]	A	G	2.120e^-4	0.588	NON_SYNONYMOUS_CODING CG15764
2L	2898512	2L_2898512_SNP [dm3] 2L_2898512_SNP [dm6]	A	C	2.127e^-4	0.588	INTRON lilli	TF binding site BDTNP1_TFBS_dl
3R	26295016	3R_26295016_SNP [dm3] 3R_30469294_SNP [dm6]	A	T	2.130e^-4	0.588	INTRON PH4alphaEFB
4	1237183	4_1237183_SNP [dm3] 4_1233457_SNP [dm6]	T	G	2.130e^-4	0.588	NON_SYNONYMOUS_CODING Caps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	10012698	X_10012698_SNP [dm3] X_10118665_SNP [dm6]	A	C	2.134e^-4	0.588	INTRON RhoU & 1 other
2R	13133688	2R_13133688_SNP [dm3] 2R_17246183_SNP [dm6]	G	T	2.137e^-4	0.588	SYNONYMOUS_CODING CG18469 DOWNSTREAM CG12699 INTRON mbl
3L	11119162	3L_11119162_SNP [dm3] 3L_11126062_SNP [dm6]	G	T	2.142e^-4	0.588	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3R	26352861	3R_26352861_SNP [dm3] 3R_30527139_SNP [dm6]	G	A	2.149e^-4	0.588	UPSTREAM jdp INTERGENIC
3R	20212906	3R_20212906_SNP [dm3] 3R_24387184_SNP [dm6]	A	T	2.149e^-4	0.588	INTRON CG5768	TF binding site BDTNP1_TFBS_sna
3R	20281417	3R_20281417_SNP [dm3] 3R_24455695_SNP [dm6]	G	A	2.149e^-4	0.588	INTRON nAChRalpha1
3R	20286120	3R_20286120_SNP [dm3] 3R_24460398_SNP [dm6]	C	G	2.149e^-4	0.588	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	6256813	X_6256813_SNP [dm3] X_6362780_SNP [dm6]	T	G	2.150e^-4	0.588	DOWNSTREAM swa EXON swaPsi
3R	12516603	3R_12516603_SNP [dm3] 3R_16690881_SNP [dm6]	A	C	2.158e^-4	0.588	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17087840	2R_17087840_SNP [dm3] 2R_21200335_SNP [dm6]	C	G	2.159e^-4	0.588	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	7535710	3L_7535710_SNP [dm3] 3L_7542610_SNP [dm6]	T	A	2.160e^-4	0.588	UPSTREAM CG32376 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26352857	3R_26352857_SNP [dm3] 3R_30527135_SNP [dm6]	C	T	2.162e^-4	0.588	UPSTREAM jdp INTERGENIC
X	4572297	X_4572297_SNP [dm3] X_4678264_SNP [dm6]	C	T	2.165e^-4	0.588	UPSTREAM rap INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9662936	3R_9662936_SNP [dm3] 3R_13837214_SNP [dm6]	T	C	2.167e^-4	0.588	INTRON Nsf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23873483	3R_23873483_SNP [dm3] 3R_28047761_SNP [dm6]	C	G	2.174e^-4	0.588	INTRON CG34362
3R	23218652	3R_23218652_SNP [dm3] 3R_27392930_SNP [dm6]	A	G	2.179e^-4	0.588	INTRON side
3R	25349881	3R_25349881_SNP [dm3] 3R_29524159_SNP [dm6]	G	A	2.180e^-4	0.588	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26359139	3R_26359139_SNP [dm3] 3R_30533417_SNP [dm6]	A	C	2.187e^-4	0.588	SYNONYMOUS_CODING tmod
2R	17098468	2R_17098468_SNP [dm3] 2R_21210963_SNP [dm6]	T	C	2.192e^-4	0.588	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
2R	6993126	2R_6993126_SNP [dm3] 2R_11105621_SNP [dm6]	G	C	2.192e^-4	0.588	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	1563665	3L_1563665_DEL [dm3] 3L_1563665_DEL [dm6]	AGATATGCATTCTGGA...	A	2.193e^-4	0.588	INTRON CG7879
3R	7762171	3R_7762171_SNP [dm3] 3R_11936449_SNP [dm6]	T	C	2.194e^-4	0.588	INTRON Cad87A
3R	7762214	3R_7762214_SNP [dm3] 3R_11936492_SNP [dm6]	T	A	2.194e^-4	0.588	INTRON Cad87A
3R	20234998	3R_20234998_SNP [dm3] 3R_24409276_SNP [dm6]	A	G	2.195e^-4	0.588	INTRON nAChRalpha1
3R	11543099	3R_11543099_SNP [dm3] 3R_15717377_SNP [dm6]	A	T	2.198e^-4	0.588	UPSTREAM CG31294 INTERGENIC
3R	25054303	3R_25054303_SNP [dm3] 3R_29228581_SNP [dm6]	T	C	2.200e^-4	0.588	UPSTREAM CG14507 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	989218	3L_989218_SNP [dm3] 3L_989218_SNP [dm6]	T	C	2.208e^-4	0.589	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	21047090	2R_21047090_SNP [dm3] 2R_25159567_SNP [dm6]	A	C	2.210e^-4	0.589	INTERGENIC
3L	3802368	3L_3802368_INS [dm3] 3L_3802368_INS [dm6]	C	CAAGAGCA	2.214e^-4	0.59	INTRON CG32264
2R	12821287	2R_12821287_SNP [dm3] 2R_16933782_SNP [dm6]	C	T	2.241e^-4	0.593	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
4	1256688	4_1256688_SNP [dm3] 4_1252962_SNP [dm6]	C	G	2.241e^-4	0.593	INTRON Caps	transposable element FlyBase
3R	20334327	3R_20334327_SNP [dm3] 3R_24508605_SNP [dm6]	T	A	2.243e^-4	0.593	DOWNSTREAM nAChRbeta2 INTERGENIC
4	701788	4_701788_SNP [dm3] 4_681162_SNP [dm6]	C	T	2.247e^-4	0.593	INTRON CG11360	TF binding site BDTNP1_TFBS_dl
2R	15578174	2R_15578174_SNP [dm3] 2R_19690669_SNP [dm6]	C	A	2.251e^-4	0.593	UPSTREAM CG15126 INTERGENIC
2R	15578189	2R_15578189_SNP [dm3] 2R_19690684_SNP [dm6]	T	A	2.251e^-4	0.593	UPSTREAM CG15126 INTERGENIC
2L	8189829	2L_8189829_SNP [dm3] 2L_8189829_SNP [dm6]	T	C	2.259e^-4	0.593	UTR_3_PRIME Piezo DOWNSTREAM CG34134 & 1 other
2L	18731011	2L_18731011_INS [dm3] 2L_18731011_INS [dm6]	G	GTTG	2.263e^-4	0.593	UTR_5_PRIME CG10348
3R	19850209	3R_19850209_SNP [dm3] 3R_24024487_SNP [dm6]	T	C	2.265e^-4	0.593	INTRON KrT95D	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
4	1028653	4_1028653_SNP [dm3] 4_1008027_SNP [dm6]	G	A	2.267e^-4	0.593	DOWNSTREAM toy INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	4183179	2R_4183179_SNP [dm3] 2R_8295674_SNP [dm6]	C	T	2.270e^-4	0.593	INTERGENIC
3L	8135020	3L_8135020_SNP [dm3] 3L_8141920_SNP [dm6]	T	C	2.271e^-4	0.593	UTR_3_PRIME mus301 & 1 other
3L	11107175	3L_11107175_SNP [dm3] 3L_11114075_SNP [dm6]	T	A	2.272e^-4	0.593	UPSTREAM Sod DOWNSTREAM fd68A INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10648718	3L_10648718_SNP [dm3] 3L_10655618_SNP [dm6]	T	A	2.275e^-4	0.593	INTRON CG32066
X	17891110	X_17891110_SNP [dm3] X_17997077_SNP [dm6]	A	G	2.277e^-4	0.593	INTRON Sh
3R	17288165	3R_17288165_SNP [dm3] 3R_21462443_SNP [dm6]	T	C	2.278e^-4	0.593	INTERGENIC
2L	12878915	2L_12878915_SNP [dm3] 2L_12878915_SNP [dm6]	T	A	2.284e^-4	0.593	INTERGENIC
3R	16225467	3R_16225467_SNP [dm3] 3R_20399745_SNP [dm6]	G	T	2.289e^-4	0.593	NON_SYNONYMOUS_CODING Gfrl DOWNSTREAM Gfrl INTRON Gfrl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7762173	3R_7762173_SNP [dm3] 3R_11936451_SNP [dm6]	G	T	2.295e^-4	0.593	INTRON Cad87A
2L	17393785	2L_17393785_SNP [dm3] 2L_17393785_SNP [dm6]	T	A	2.299e^-4	0.593	INTRON CLIP-190
2L	17393786	2L_17393786_SNP [dm3] 2L_17393786_SNP [dm6]	C	A	2.299e^-4	0.593	INTRON CLIP-190
4	476928	4_476928_SNP [dm3] 4_456302_SNP [dm6]	A	G	2.301e^-4	0.593	INTERGENIC	transposable element FlyBase
2R	10925616	2R_10925616_SNP [dm3] 2R_15038111_SNP [dm6]	A	G	2.305e^-4	0.593	INTRON hbs
X	1161739	X_1161739_SNP [dm3] X_1267706_SNP [dm6]	C	A	2.310e^-4	0.593	INTRON Atf3
2R	6369862	2R_6369862_SNP [dm3] 2R_10482357_SNP [dm6]	C	T	2.312e^-4	0.593	UTR_3_PRIME lola & 1 other DOWNSTREAM CG17765	TF binding site BDTNP1_TFBS_dl
3R	14015256	3R_14015256_SNP [dm3] 3R_18189534_SNP [dm6]	T	C	2.312e^-4	0.593	SYNONYMOUS_CODING MED17 UPSTREAM CG12321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18226223	2R_18226223_SNP [dm3] 2R_22338718_SNP [dm6]	C	T	2.312e^-4	0.593	INTRON Liprin-gamma
X	18926557	X_18926557_INS [dm3] X_19032524_INS [dm6]	C	CT	2.314e^-4	0.593	INTERGENIC
3L	7535717	3L_7535717_SNP [dm3] 3L_7542617_SNP [dm6]	C	T	2.330e^-4	0.596	UPSTREAM CG32376 INTERGENIC	TF binding site mE1_TFBS_HSA
X	17907732	X_17907732_SNP [dm3] X_18013699_SNP [dm6]	T	A	2.342e^-4	0.597	INTRON Sh
2L	2717467	2L_2717467_SNP [dm3] 2L_2717467_SNP [dm6]	T	A	2.344e^-4	0.597	INTRON CG31690
3L	4054697	3L_4054697_SNP [dm3] 3L_4054697_SNP [dm6]	G	C	2.345e^-4	0.597	INTRON CG1136
X	21353374	X_21353374_SNP [dm3] X_21482347_SNP [dm6]	A	G	2.350e^-4	0.597	DOWNSTREAM CR45511 INTERGENIC
3R	20134500	3R_20134500_SNP [dm3] 3R_24308778_SNP [dm6]	A	G	2.358e^-4	0.597	INTRON crb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	20206540	3R_20206540_SNP [dm3] 3R_24380818_SNP [dm6]	T	C	2.358e^-4	0.597	INTERGENIC
2L	8863318	2L_8863318_SNP [dm3] 2L_8863318_SNP [dm6]	G	A	2.361e^-4	0.597	NON_SYNONYMOUS_CODING CG32986 UPSTREAM CG32987 EXON CR45260	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11854066	2R_11854066_SNP [dm3] 2R_15966561_SNP [dm6]	T	A	2.361e^-4	0.597	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10694944	3L_10694944_SNP [dm3] 3L_10701844_SNP [dm6]	A	G	2.368e^-4	0.597	INTERGENIC
3R	14627309	3R_14627309_SNP [dm3] 3R_18801587_SNP [dm6]	A	C	2.370e^-4	0.597	UTR_3_PRIME CG18208
X	6440815	X_6440815_SNP [dm3] X_6546782_SNP [dm6]	G	A	2.373e^-4	0.597	INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7535288	3L_7535288_SNP [dm3] 3L_7542188_SNP [dm6]	A	C	2.379e^-4	0.597	SYNONYMOUS_CODING CG32376	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20240756	3R_20240756_SNP [dm3] 3R_24415034_SNP [dm6]	G	C	2.380e^-4	0.597	INTRON nAChRalpha1
2R	6741975	2R_6741975_SNP [dm3] 2R_10854470_SNP [dm6]	G	T	2.386e^-4	0.597	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
3R	19028180	3R_19028180_SNP [dm3] 3R_23202458_SNP [dm6]	G	A	2.392e^-4	0.597	SYNONYMOUS_CODING fzo INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	27135832	3R_27135832_SNP [dm3] 3R_31310110_SNP [dm6]	T	C	2.394e^-4	0.597	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17061850	X_17061850_SNP [dm3] X_17167817_SNP [dm6]	A	C	2.399e^-4	0.597	INTRON baz
3L	7729027	3L_7729027_SNP [dm3] 3L_7735927_SNP [dm6]	G	A	2.400e^-4	0.597	INTRON CG32373 & 1 other
3L	3335516	3L_3335516_SNP [dm3] 3L_3335516_SNP [dm6]	A	G	2.405e^-4	0.597	UPSTREAM CG14969 DOWNSTREAM Drsl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
4	1215058	4_1215058_SNP [dm3] 4_1194432_SNP [dm6]	T	A	2.405e^-4	0.597	INTRON PIP4K	transposable element FlyBase
3R	20357316	3R_20357316_SNP [dm3] 3R_24531594_SNP [dm6]	T	C	2.406e^-4	0.597	SYNONYMOUS_CODING ana1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13692006	3R_13692006_SNP [dm3] 3R_17866284_SNP [dm6]	A	T	2.407e^-4	0.597	INTRON tinc
3R	19038647	3R_19038647_SNP [dm3] 3R_23212925_SNP [dm6]	T	C	2.407e^-4	0.597	INTRON cnc	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	8571951	2R_8571951_SNP [dm3] 2R_12684446_SNP [dm6]	G	T	2.415e^-4	0.597	NON_SYNONYMOUS_CODING CG8771
2R	6977143	2R_6977143_SNP [dm3] 2R_11089638_SNP [dm6]	G	A	2.421e^-4	0.597	INTRON luna	TF binding site BDTNP1_TFBS_twi
3R	17308750	3R_17308750_SNP [dm3] 3R_21483028_SNP [dm6]	G	A	2.423e^-4	0.597	NON_SYNONYMOUS_CODING CG7922	TF binding site mE1_TFBS_sens
3R	9362916	3R_9362916_SNP [dm3] 3R_13537194_SNP [dm6]	A	C	2.425e^-4	0.597	INTERGENIC
3R	20186150	3R_20186150_SNP [dm3] 3R_24360428_SNP [dm6]	G	A	2.428e^-4	0.597	UPSTREAM CG18528 DOWNSTREAM CG5762 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	3883098	3L_3883098_SNP [dm3] 3L_3883098_SNP [dm6]	G	T	2.431e^-4	0.597	INTERGENIC
X	17899193	X_17899193_SNP [dm3] X_18005160_SNP [dm6]	G	A	2.431e^-4	0.597	DOWNSTREAM CG12672 INTRON Sh
3R	13215105	3R_13215105_SNP [dm3] 3R_17389383_SNP [dm6]	G	A	2.434e^-4	0.597	UTR_3_PRIME lute INTRON Brf
2R	19655743	2R_19655743_SNP [dm3] 2R_23768220_SNP [dm6]	G	C	2.435e^-4	0.597	SYNONYMOUS_CODING CG9850
3R	21457267	3R_21457267_SNP [dm3] 3R_25631545_SNP [dm6]	G	A	2.441e^-4	0.597	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10308732	2R_10308732_SNP [dm3] 2R_14421227_SNP [dm6]	G	A	2.441e^-4	0.597	SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	1055456	3L_1055456_SNP [dm3] 3L_1055456_SNP [dm6]	G	A	2.444e^-4	0.597	INTRON bab1
3R	20168960	3R_20168960_SNP [dm3] 3R_24343238_SNP [dm6]	A	T	2.448e^-4	0.597	UTR_3_PRIME Ms DOWNSTREAM CG5746
3L	10701093	3L_10701093_SNP [dm3] 3L_10707993_SNP [dm6]	A	C	2.451e^-4	0.597	INTERGENIC
3R	18505888	3R_18505888_SNP [dm3] 3R_22680166_SNP [dm6]	G	C	2.457e^-4	0.597	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12644431	3L_12644431_SNP [dm3] 3L_12651331_SNP [dm6]	A	T	2.463e^-4	0.597	INTRON CR43431	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24106247	3R_24106247_SNP [dm3] 3R_28280525_SNP [dm6]	G	A	2.470e^-4	0.597	INTERGENIC
2R	17102419	2R_17102419_SNP [dm3] 2R_21214914_SNP [dm6]	A	C	2.471e^-4	0.597	UTR_5_PRIME CG4302 DOWNSTREAM CG15661
3R	21071436	3R_21071436_SNP [dm3] 3R_25245714_SNP [dm6]	A	T	2.471e^-4	0.597	UPSTREAM bam DOWNSTREAM RpS27 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9992234	3R_9992234_SNP [dm3] 3R_14166512_SNP [dm6]	C	T	2.473e^-4	0.597	UTR_3_PRIME Dop1R1
3L	7729028	3L_7729028_SNP [dm3] 3L_7735928_SNP [dm6]	C	T	2.477e^-4	0.597	INTRON CG32373 & 1 other
2R	17086797	2R_17086797_SNP [dm3] 2R_21199292_SNP [dm6]	C	T	2.478e^-4	0.597	UTR_3_PRIME Lapsyn	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	9917497	3R_9917497_SNP [dm3] 3R_14091775_SNP [dm6]	T	A	2.479e^-4	0.597	DOWNSTREAM CCHa1 INTRON Npc2b
2R	8663898	2R_8663898_SNP [dm3] 2R_12776393_SNP [dm6]	T	C	2.494e^-4	0.599	UPSTREAM CR45266 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	17288128	3R_17288128_SNP [dm3] 3R_21462406_SNP [dm6]	T	C	2.498e^-4	0.599	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11162963	3L_11162963_SNP [dm3] 3L_11169863_SNP [dm6]	T	C	2.499e^-4	0.599	UTR_5_PRIME CG7616 UPSTREAM CG7616 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	6284752	3R_6284752_SNP [dm3] 3R_10459030_SNP [dm6]	A	G	2.505e^-4	0.6	INTERGENIC
2R	10629782	2R_10629782_SNP [dm3] 2R_14742277_SNP [dm6]	C	T	2.512e^-4	0.6	SYNONYMOUS_CODING CG12858
X	3245207	X_3245207_SNP [dm3] X_3351174_SNP [dm6]	A	G	2.524e^-4	0.6	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3335378	3L_3335378_DEL [dm3] 3L_3335378_DEL [dm6]	AA	A	2.526e^-4	0.6	UPSTREAM CG14969 DOWNSTREAM Drsl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20945433	X_20945433_SNP [dm3] X_21074406_SNP [dm6]	T	C	2.527e^-4	0.6	INTRON bves
2R	6372516	2R_6372516_SNP [dm3] 2R_10485011_SNP [dm6]	T	G	2.529e^-4	0.6	UTR_5_PRIME pre-lola-G INTRON lola & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21503038	3R_21503038_SNP [dm3] 3R_25677316_SNP [dm6]	G	C	2.535e^-4	0.6	NON_SYNONYMOUS_CODING CG4730 UPSTREAM CR45225 DOWNSTREAM Lgr3
3R	9676783	3R_9676783_DEL [dm3] 3R_13851061_DEL [dm6]	GGAAAATTAAGCTATGCGAA...	CCC	2.536e^-4	0.6	INTERGENIC
3R	25427860	3R_25427860_SNP [dm3] 3R_29602138_SNP [dm6]	T	A	2.540e^-4	0.6	INTRON alph
3L	13945259	3L_13945259_SNP [dm3] 3L_13952159_SNP [dm6]	T	A	2.542e^-4	0.6	INTRON CG32137
3R	19729413	3R_19729413_SNP [dm3] 3R_23903691_SNP [dm6]	C	T	2.546e^-4	0.6	INTRON sba
X	20571251	X_20571251_SNP [dm3] X_20700224_SNP [dm6]	C	A	2.547e^-4	0.6	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2L	10232787	2L_10232787_SNP [dm3] 2L_10232787_SNP [dm6]	C	A	2.549e^-4	0.6	INTRON eEF1delta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	15399912	2R_15399912_SNP [dm3] 2R_19512407_SNP [dm6]	A	G	2.551e^-4	0.6	SYNONYMOUS_CODING Ir56d DOWNSTREAM Ir56c	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	10530894	2L_10530894_SNP [dm3] 2L_10530894_SNP [dm6]	T	C	2.553e^-4	0.6	SYNONYMOUS_CODING Lip4 UPSTREAM CG18301
2L	1344241	2L_1344241_SNP [dm3] 2L_1344241_SNP [dm6]	G	T	2.555e^-4	0.6	UPSTREAM Cdlc2 & 1 other INTERGENIC
3L	7866714	3L_7866714_SNP [dm3] 3L_7873614_SNP [dm6]	C	G	2.557e^-4	0.6	INTRON CG32365
2L	12408486	2L_12408486_SNP [dm3] 2L_12408486_SNP [dm6]	A	G	2.567e^-4	0.601	INTRON vir-1
2R	20305172	2R_20305172_SNP [dm3] 2R_24417649_SNP [dm6]	G	A	2.568e^-4	0.601	SYNONYMOUS_CODING prom	TF binding site mE1_TFBS_chinmo
2L	3412136	2L_3412136_SNP [dm3] 2L_3412136_SNP [dm6]	A	C	2.572e^-4	0.601	DOWNSTREAM CG8840 INTRON pgant2
3L	13751374	3L_13751374_SNP [dm3] 3L_13758274_SNP [dm6]	C	T	2.576e^-4	0.601	INTRON bru-3
3R	7762307	3R_7762307_SNP [dm3] 3R_11936585_SNP [dm6]	T	A	2.578e^-4	0.601	INTRON Cad87A
2R	15782779	2R_15782779_SNP [dm3] 2R_19895274_SNP [dm6]	G	T	2.580e^-4	0.601	INTERGENIC
3L	7219475	3L_7219475_SNP [dm3] 3L_7226375_SNP [dm6]	C	T	2.581e^-4	0.601	INTERGENIC
3R	17288219	3R_17288219_SNP [dm3] 3R_21462497_SNP [dm6]	G	C	2.584e^-4	0.601	INTERGENIC
3L	3334814	3L_3334814_SNP [dm3] 3L_3334814_SNP [dm6]	A	T	2.588e^-4	0.601	UTR_5_PRIME CG14969 DOWNSTREAM Drsl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25054606	3R_25054606_SNP [dm3] 3R_29228884_SNP [dm6]	A	G	2.594e^-4	0.601	UPSTREAM CG15817 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	20422373	3R_20422373_SNP [dm3] 3R_24596651_SNP [dm6]	T	G	2.603e^-4	0.602	INTRON mld
3R	20243198	3R_20243198_SNP [dm3] 3R_24417476_SNP [dm6]	A	G	2.612e^-4	0.602	INTRON nAChRalpha1
3R	26039844	3R_26039844_SNP [dm3] 3R_30214122_SNP [dm6]	T	A	2.619e^-4	0.602	UPSTREAM CecB DOWNSTREAM Cec2 INTERGENIC
2L	11422094	2L_11422094_SNP [dm3] 2L_11422094_SNP [dm6]	T	C	2.621e^-4	0.602	INTERGENIC
3R	5936436	3R_5936436_SNP [dm3] 3R_10110714_SNP [dm6]	G	C	2.626e^-4	0.602	UPSTREAM Fmr1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7219465	3L_7219465_SNP [dm3] 3L_7226365_SNP [dm6]	A	G	2.628e^-4	0.602	INTERGENIC
2L	6889160	2L_6889160_SNP [dm3] 2L_6889160_SNP [dm6]	C	T	2.629e^-4	0.602	INTRON Nlg2
3R	25350232	3R_25350232_SNP [dm3] 3R_29524510_SNP [dm6]	G	A	2.636e^-4	0.602	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9900965	X_9900965_SNP [dm3] X_10006932_SNP [dm6]	C	G	2.639e^-4	0.602	DOWNSTREAM CG32694 INTERGENIC
X	17061851	X_17061851_INS [dm3] X_17167818_INS [dm6]	C	CTTACC	2.641e^-4	0.602	INTRON baz
X	17061861	X_17061861_DEL [dm3] X_17167828_DEL [dm6]	GCGATCG	A	2.641e^-4	0.602	INTRON baz
2R	20994960	2R_20994960_SNP [dm3] 2R_25107437_SNP [dm6]	C	T	2.643e^-4	0.602	INTRON lov	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16227635	3R_16227635_SNP [dm3] 3R_20401913_SNP [dm6]	T	C	2.643e^-4	0.602	INTRON Gfrl
3R	24032559	3R_24032559_SNP [dm3] 3R_28206837_SNP [dm6]	C	T	2.650e^-4	0.602	INTRON CG34354
2R	6206984	2R_6206984_SNP [dm3] 2R_10319479_SNP [dm6]	G	A	2.653e^-4	0.602	NON_SYNONYMOUS_CODING Ndg DOWNSTREAM CG34222	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11119555	3L_11119555_SNP [dm3] 3L_11126455_SNP [dm6]	T	A	2.654e^-4	0.602	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	6982326	2R_6982326_SNP [dm3] 2R_11094821_SNP [dm6]	A	G	2.658e^-4	0.602	INTRON luna
2R	11853944	2R_11853944_SNP [dm3] 2R_15966439_SNP [dm6]	G	A	2.658e^-4	0.602	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19557745	X_19557745_SNP [dm3] X_19663712_SNP [dm6]	G	T	2.666e^-4	0.602	UTR_5_PRIME CG14223 UPSTREAM CG14223 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	16891373	X_16891373_SNP [dm3] X_16997340_SNP [dm6]	A	T	2.679e^-4	0.602	INTRON CG45002
3R	25536764	3R_25536764_SNP [dm3] 3R_29711042_SNP [dm6]	G	C	2.680e^-4	0.602	INTERGENIC
3R	25431672	3R_25431672_SNP [dm3] 3R_29605950_SNP [dm6]	C	T	2.682e^-4	0.602	INTRON alph
3L	15046527	3L_15046527_SNP [dm3] 3L_15053427_SNP [dm6]	G	T	2.684e^-4	0.602	UPSTREAM CG13461 & 1 other DOWNSTREAM CG18649 INTRON Sytbeta
3R	21921291	3R_21921291_SNP [dm3] 3R_26095569_SNP [dm6]	C	G	2.689e^-4	0.602	INTRON dys	regulatory region REDfly_CRMs
2L	2070218	2L_2070218_SNP [dm3] 2L_2070218_SNP [dm6]	G	A	2.692e^-4	0.602	INTRON dpr3
2R	9352211	2R_9352211_SNP [dm3] 2R_13464706_SNP [dm6]	T	C	2.707e^-4	0.602	INTRON arr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16148529	X_16148529_SNP [dm3] X_16254496_SNP [dm6]	C	T	2.709e^-4	0.602	UPSTREAM snRNA:U2:14B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3599198	3L_3599198_SNP [dm3] 3L_3599198_SNP [dm6]	T	A	2.709e^-4	0.602	INTRON Eip63E
3R	19869955	3R_19869955_SNP [dm3] 3R_24044233_SNP [dm6]	C	G	2.712e^-4	0.602	NON_SYNONYMOUS_CODING Rox8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14454292	2R_14454292_DEL [dm3] 2R_18566787_DEL [dm6]	GG	G	2.713e^-4	0.602	INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20313596	3R_20313596_SNP [dm3] 3R_24487874_SNP [dm6]	C	T	2.714e^-4	0.602	UPSTREAM mir-1017 INTRON nAChRalpha2
3R	17288209	3R_17288209_SNP [dm3] 3R_21462487_SNP [dm6]	T	G	2.724e^-4	0.602	INTERGENIC
2R	5668732	2R_5668732_SNP [dm3] 2R_9781227_SNP [dm6]	C	A	2.734e^-4	0.602	INTRON CG1688	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25602348	3R_25602348_SNP [dm3] 3R_29776626_SNP [dm6]	C	A	2.739e^-4	0.602	INTRON kay
3R	11942350	3R_11942350_SNP [dm3] 3R_16116628_SNP [dm6]	T	C	2.745e^-4	0.602	INTRON Sb
3R	12855249	3R_12855249_SNP [dm3] 3R_17029527_SNP [dm6]	T	C	2.749e^-4	0.602	INTRON CG5225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20302161	3R_20302161_SNP [dm3] 3R_24476439_SNP [dm6]	C	A	2.754e^-4	0.602	INTERGENIC
3R	14760363	3R_14760363_SNP [dm3] 3R_18934641_SNP [dm6]	A	T	2.757e^-4	0.602	INTRON CG42613
2R	9526020	2R_9526020_DEL [dm3] 2R_13638515_DEL [dm6]	TTAAATACGTT...	T	2.759e^-4	0.602	INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16786465	2R_16786465_SNP [dm3] 2R_20898960_SNP [dm6]	C	G	2.761e^-4	0.602	DOWNSTREAM CR43160 INTRON otp	regulatory region REDfly_CRMs
3R	25546526	3R_25546526_SNP [dm3] 3R_29720804_SNP [dm6]	A	G	2.766e^-4	0.602	INTRON CG15506
3R	19033798	3R_19033798_SNP [dm3] 3R_23208076_SNP [dm6]	G	A	2.768e^-4	0.602	INTRON cnc
3R	20283473	3R_20283473_SNP [dm3] 3R_24457751_SNP [dm6]	T	A	2.770e^-4	0.602	UPSTREAM nAChRalpha1 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3R	21328498	3R_21328498_SNP [dm3] 3R_25502776_SNP [dm6]	A	G	2.770e^-4	0.602	UPSTREAM CR43457 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	18629268	3L_18629268_SNP [dm3] 3L_18636168_SNP [dm6]	C	A	2.775e^-4	0.602	INTRON MYPT-75D
3R	25546324	3R_25546324_SNP [dm3] 3R_29720602_SNP [dm6]	A	G	2.780e^-4	0.602	INTRON CG15506
2L	10530889	2L_10530889_SNP [dm3] 2L_10530889_SNP [dm6]	T	C	2.791e^-4	0.602	SYNONYMOUS_CODING Lip4 UPSTREAM CG18301
2L	12340573	2L_12340573_SNP [dm3] 2L_12340573_SNP [dm6]	T	C	2.792e^-4	0.602	INTERGENIC
2L	10378436	2L_10378436_SNP [dm3] 2L_10378436_SNP [dm6]	T	A	2.794e^-4	0.602	INTRON dpr19
3R	21573559	3R_21573559_SNP [dm3] 3R_25747837_SNP [dm6]	G	A	2.797e^-4	0.602	INTRON LpR1
2R	9515642	2R_9515642_SNP [dm3] 2R_13628137_SNP [dm6]	G	A	2.798e^-4	0.602	INTRON fas
3R	11543205	3R_11543205_SNP [dm3] 3R_15717483_SNP [dm6]	T	G	2.801e^-4	0.602	UPSTREAM CG31294 INTERGENIC
3L	14479260	3L_14479260_SNP [dm3] 3L_14486160_SNP [dm6]	A	G	2.804e^-4	0.602	INTRON bbg
2R	6994275	2R_6994275_SNP [dm3] 2R_11106770_SNP [dm6]	G	T	2.805e^-4	0.602	UTR_5_PRIME luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25157868	3R_25157868_SNP [dm3] 3R_29332146_SNP [dm6]	G	C	2.806e^-4	0.602	INTERGENIC
3R	24137701	3R_24137701_SNP [dm3] 3R_28311979_SNP [dm6]	G	A	2.811e^-4	0.602	INTERGENIC
2R	6648891	2R_6648891_SNP [dm3] 2R_10761386_SNP [dm6]	G	A	2.819e^-4	0.602	INTRON CG33144 EXON CR43605
2R	15239666	2R_15239666_SNP [dm3] 2R_19352161_SNP [dm6]	A	T	2.820e^-4	0.602	INTRON Rgk1
2R	21024748	2R_21024748_SNP [dm3] 2R_25137225_SNP [dm6]	A	T	2.829e^-4	0.602	INTRON lov
2L	12340603	2L_12340603_INS [dm3] 2L_12340603_INS [dm6]	T	TTTT	2.829e^-4	0.602	INTERGENIC
X	19074008	X_19074008_SNP [dm3] X_19179975_SNP [dm6]	A	C	2.831e^-4	0.602	UPSTREAM CG7453 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9557206	3L_9557206_SNP [dm3] 3L_9564106_SNP [dm6]	A	C	2.835e^-4	0.602	INTRON CG42673
2R	6496487	2R_6496487_SNP [dm3] 2R_10608982_SNP [dm6]	G	A	2.843e^-4	0.602	INTRON psq
3R	26341444	3R_26341444_SNP [dm3] 3R_30515722_SNP [dm6]	A	T	2.848e^-4	0.602	SYNONYMOUS_CODING CG9698
3R	20348213	3R_20348213_SNP [dm3] 3R_24522491_SNP [dm6]	C	T	2.849e^-4	0.602	UTR_3_PRIME CG13622 DOWNSTREAM Pp1alpha-96A	TF binding site BDTNP1_TFBS_dl
3R	21053184	3R_21053184_SNP [dm3] 3R_25227462_SNP [dm6]	A	C	2.854e^-4	0.602	INTRON Cad96Cb
3R	21053311	3R_21053311_SNP [dm3] 3R_25227589_SNP [dm6]	G	A	2.854e^-4	0.602	INTRON Cad96Cb
X	16754020	X_16754020_SNP [dm3] X_16859987_SNP [dm6]	T	C	2.855e^-4	0.602	INTRON CG13003
2R	1709399	2R_1709399_SNP [dm3] 2R_5821894_SNP [dm6]	A	C	2.859e^-4	0.602	INTRON dpr12	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20298647	3R_20298647_SNP [dm3] 3R_24472925_SNP [dm6]	A	C	2.866e^-4	0.602	INTERGENIC
3R	20626590	3R_20626590_SNP [dm3] 3R_24800868_SNP [dm6]	C	T	2.867e^-4	0.602	SYNONYMOUS_CODING polybromo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9602246	3L_9602246_SNP [dm3] 3L_9609146_SNP [dm6]	T	C	2.869e^-4	0.602	SYNONYMOUS_CODING CG3280
3R	26873074	3R_26873074_SNP [dm3] 3R_31047352_SNP [dm6]	G	A	2.873e^-4	0.602	DOWNSTREAM CanA1 INTERGENIC
X	9902291	X_9902291_SNP [dm3] X_10008258_SNP [dm6]	C	T	2.878e^-4	0.602	UPSTREAM CG33557 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	21951290	3R_21951290_SNP [dm3] 3R_26125568_SNP [dm6]	G	T	2.878e^-4	0.602	INTRON CG31324
3L	11115300	3L_11115300_SNP [dm3] 3L_11122200_SNP [dm6]	T	C	2.881e^-4	0.602	SYNONYMOUS_CODING Ufd1-like DOWNSTREAM mRpL2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20254170	3R_20254170_SNP [dm3] 3R_24428448_SNP [dm6]	C	T	2.881e^-4	0.602	INTRON nAChRalpha1
2R	21049754	2R_21049754_SNP [dm3] 2R_25162231_SNP [dm6]	T	C	2.881e^-4	0.602	INTERGENIC
2R	1769758	2R_1769758_SNP [dm3] 2R_5882253_SNP [dm6]	G	A	2.886e^-4	0.602	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	1276109	3L_1276109_SNP [dm3] 3L_1276109_SNP [dm6]	T	C	2.888e^-4	0.602	UTR_5_PRIME CG32333	TF binding site mE1_TFBS_Trl
2R	11978243	2R_11978243_SNP [dm3] 2R_16090738_SNP [dm6]	G	C	2.899e^-4	0.602	INTRON Dg
2R	9656062	2R_9656062_SNP [dm3] 2R_13768557_SNP [dm6]	A	G	2.903e^-4	0.602	INTERGENIC
X	8933031	X_8933031_SNP [dm3] X_9038998_SNP [dm6]	C	T	2.906e^-4	0.602	UPSTREAM CG42388 INTRON CR43836 & 1 other
2R	20298393	2R_20298393_SNP [dm3] 2R_24410870_SNP [dm6]	G	T	2.908e^-4	0.602	UTR_5_PRIME SerT UPSTREAM SerT & 2 others
3R	24412173	3R_24412173_DEL [dm3] 3R_28586451_DEL [dm6]	GTA	G	2.908e^-4	0.602	EXON MRE23	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	20317263	3R_20317263_SNP [dm3] 3R_24491541_SNP [dm6]	C	G	2.910e^-4	0.602	DOWNSTREAM nAChRalpha2 INTERGENIC
4	1023265	4_1023265_SNP [dm3] 4_1002639_SNP [dm6]	T	C	2.911e^-4	0.602	INTRON toy
3R	14523022	3R_14523022_SNP [dm3] 3R_18697300_SNP [dm6]	G	C	2.911e^-4	0.602	INTERGENIC
3L	3681411	3L_3681411_SNP [dm3] 3L_3681411_SNP [dm6]	A	T	2.915e^-4	0.602	INTERGENIC
3R	26359285	3R_26359285_SNP [dm3] 3R_30533563_SNP [dm6]	A	T	2.915e^-4	0.602	INTRON tmod
3R	20984490	3R_20984490_SNP [dm3] 3R_25158768_SNP [dm6]	A	G	2.920e^-4	0.602	INTERGENIC
X	14441817	X_14441817_SNP [dm3] X_14547784_SNP [dm6]	A	G	2.922e^-4	0.602	INTERGENIC
2L	10587111	2L_10587111_SNP [dm3] 2L_10587111_SNP [dm6]	T	G	2.922e^-4	0.602	INTRON Trim9	TF binding site mE1_TFBS_chinmo
2L	2176208	2L_2176208_SNP [dm3] 2L_2176208_SNP [dm6]	C	T	2.925e^-4	0.602	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	21254890	X_21254890_SNP [dm3] X_21383863_SNP [dm6]	C	T	2.926e^-4	0.602	SYNONYMOUS_CODING slgA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11942348	3R_11942348_SNP [dm3] 3R_16116626_SNP [dm6]	G	T	2.927e^-4	0.602	INTRON Sb
X	3245209	X_3245209_SNP [dm3] X_3351176_SNP [dm6]	T	A	2.928e^-4	0.602	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3245210	X_3245210_SNP [dm3] X_3351177_SNP [dm6]	G	C	2.928e^-4	0.602	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3245213	X_3245213_MNP [dm3] X_3351180_MNP [dm6]	AGAAA	TATTT	2.928e^-4	0.602	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3245221	X_3245221_DEL [dm3] X_3351188_DEL [dm6]	ACACC	A	2.928e^-4	0.602	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24051909	3R_24051909_SNP [dm3] 3R_28226187_SNP [dm6]	C	G	2.928e^-4	0.602	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
4	151585	4_151585_SNP [dm3] 4_130959_SNP [dm6]	A	T	2.931e^-4	0.602	INTERGENIC	transposable element FlyBase
3L	11107168	3L_11107168_SNP [dm3] 3L_11114068_SNP [dm6]	G	A	2.932e^-4	0.602	UPSTREAM Sod DOWNSTREAM fd68A INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14193915	3R_14193915_SNP [dm3] 3R_18368193_SNP [dm6]	G	C	2.933e^-4	0.602	UTR_3_PRIME gl DOWNSTREAM Nup43
3R	10827221	3R_10827221_SNP [dm3] 3R_15001499_SNP [dm6]	C	A	2.935e^-4	0.602	INTERGENIC
X	5363757	X_5363757_SNP [dm3] X_5469724_SNP [dm6]	A	G	2.947e^-4	0.604	INTRON SPR
X	15148172	X_15148172_SNP [dm3] X_15254139_SNP [dm6]	A	T	2.948e^-4	0.604	INTERGENIC
3L	14479263	3L_14479263_SNP [dm3] 3L_14486163_SNP [dm6]	C	A	2.958e^-4	0.604	INTRON bbg
3R	21950060	3R_21950060_SNP [dm3] 3R_26124338_SNP [dm6]	C	T	2.965e^-4	0.604	INTRON CG31324
X	1040895	X_1040895_SNP [dm3] X_1146862_SNP [dm6]	C	G	2.966e^-4	0.604	DOWNSTREAM CG14628 INTERGENIC
3L	12986566	3L_12986566_SNP [dm3] 3L_12993466_SNP [dm6]	T	C	2.966e^-4	0.604	INTERGENIC
X	15249476	X_15249476_SNP [dm3] X_15355443_SNP [dm6]	C	G	2.969e^-4	0.604	INTRON acj6	TF binding site BDTNP1_TFBS_dl
2R	10585812	2R_10585812_SNP [dm3] 2R_14698307_SNP [dm6]	G	T	2.972e^-4	0.604	INTRON mspo
3R	19486190	3R_19486190_SNP [dm3] 3R_23660468_SNP [dm6]	A	G	2.976e^-4	0.604	INTRON CG31145
X	18926960	X_18926960_SNP [dm3] X_19032927_SNP [dm6]	A	C	2.981e^-4	0.604	INTERGENIC
2L	11734394	2L_11734394_SNP [dm3] 2L_11734394_SNP [dm6]	T	A	2.984e^-4	0.604	INTERGENIC
3R	27278010	3R_27278010_SNP [dm3] 3R_31452288_SNP [dm6]	C	T	2.987e^-4	0.604	INTRON Gprk2	TF binding site mE1_TFBS_cad
3R	21096931	3R_21096931_SNP [dm3] 3R_25271209_SNP [dm6]	C	T	2.989e^-4	0.604	SYNONYMOUS_CODING CG11889 UTR_5_PRIME CG11891 UPSTREAM CG11891
3R	19182891	3R_19182891_SNP [dm3] 3R_23357169_SNP [dm6]	A	T	2.990e^-4	0.604	INTRON Sec13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	12300285	2R_12300285_SNP [dm3] 2R_16412780_SNP [dm6]	T	C	2.996e^-4	0.605	INTRON Sema-2b
2L	3799407	2L_3799407_SNP [dm3] 2L_3799407_SNP [dm6]	T	C	2.998e^-4	0.605	SYNONYMOUS_CODING CG3921
3R	5923843	3R_5923843_SNP [dm3] 3R_10098121_SNP [dm6]	G	T	3.002e^-4	0.605	EXON CR43459
3R	25878785	3R_25878785_SNP [dm3] 3R_30053063_SNP [dm6]	T	C	3.009e^-4	0.605	SYNONYMOUS_CODING CG7946 UPSTREAM CG15528 DOWNSTREAM CR44046	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	10701092	3L_10701092_SNP [dm3] 3L_10707992_SNP [dm6]	C	A	3.011e^-4	0.605	INTERGENIC
3R	24129687	3R_24129687_SNP [dm3] 3R_28303965_SNP [dm6]	A	G	3.012e^-4	0.605	SYNONYMOUS_CODING CG12516
3L	13784385	3L_13784385_SNP [dm3] 3L_13791285_SNP [dm6]	G	C	3.024e^-4	0.605	INTRON bru-3
2R	7111836	2R_7111836_SNP [dm3] 2R_11224331_SNP [dm6]	T	A	3.025e^-4	0.605	INTRON CG7737
2R	16667934	2R_16667934_SNP [dm3] 2R_20780429_SNP [dm6]	A	G	3.030e^-4	0.605	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13750048	3L_13750048_SNP [dm3] 3L_13756948_SNP [dm6]	G	T	3.039e^-4	0.605	INTRON bru-3
3R	26038971	3R_26038971_SNP [dm3] 3R_30213249_SNP [dm6]	G	C	3.040e^-4	0.605	DOWNSTREAM CecB & 2 others INTERGENIC
3R	7734968	3R_7734968_SNP [dm3] 3R_11909246_SNP [dm6]	T	C	3.042e^-4	0.605	INTRON Cad87A
3L	8023278	3L_8023278_SNP [dm3] 3L_8030178_SNP [dm6]	A	G	3.042e^-4	0.605	INTRON nmo
3R	17288200	3R_17288200_SNP [dm3] 3R_21462478_SNP [dm6]	A	T	3.043e^-4	0.605	INTERGENIC
2R	18000918	2R_18000918_DEL [dm3] 2R_22113413_DEL [dm6]	GT	G	3.049e^-4	0.605	UPSTREAM CG30280 & 1 other INTRON Vrp1
3L	7535084	3L_7535084_SNP [dm3] 3L_7541984_SNP [dm6]	G	A	3.052e^-4	0.605	SYNONYMOUS_CODING CG32376 UPSTREAM CG32374	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12423880	2R_12423880_SNP [dm3] 2R_16536375_SNP [dm6]	C	T	3.053e^-4	0.605	SYNONYMOUS_CODING loopin-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1500206	2L_1500206_SNP [dm3] 2L_1500206_SNP [dm6]	A	G	3.053e^-4	0.605	SPLICE_SITE_REGION CG18131 UTR_5_PRIME CG18131 UPSTREAM CR44064 DOWNSTREAM CG7420 INTRON CG18131
X	13402444	X_13402444_SNP [dm3] X_13508411_SNP [dm6]	C	T	3.061e^-4	0.606	INTRON Neto
3R	27150888	3R_27150888_SNP [dm3] 3R_31325166_SNP [dm6]	A	G	3.062e^-4	0.606	INTRON CG34347
X	1484526	X_1484526_SNP [dm3] X_1590493_SNP [dm6]	C	A	3.066e^-4	0.606	INTRON br & 1 other
2L	12698592	2L_12698592_SNP [dm3] 2L_12698592_SNP [dm6]	C	T	3.071e^-4	0.606	NON_SYNONYMOUS_CODING PICK1 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13617444	3L_13617444_SNP [dm3] 3L_13624344_SNP [dm6]	C	T	3.074e^-4	0.606	INTRON bru-3
3L	10451161	3L_10451161_SNP [dm3] 3L_10458061_SNP [dm6]	G	A	3.088e^-4	0.606	INTERGENIC
2R	11057450	2R_11057450_SNP [dm3] 2R_15169945_SNP [dm6]	G	A	3.088e^-4	0.606	INTRON igl
2R	12022123	2R_12022123_SNP [dm3] 2R_16134618_SNP [dm6]	G	A	3.091e^-4	0.606	INTRON spin
2L	2882693	2L_2882693_SNP [dm3] 2L_2882693_SNP [dm6]	A	G	3.091e^-4	0.606	SPLICE_SITE_REGION NTPase SYNONYMOUS_CODING NTPase UTR_5_PRIME NTPase	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	9250604	2R_9250604_SNP [dm3] 2R_13363099_SNP [dm6]	G	A	3.094e^-4	0.606	UPSTREAM CR45312 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
4	799662	4_799662_SNP [dm3] 4_779036_SNP [dm6]	G	T	3.096e^-4	0.606	NON_SYNONYMOUS_CODING MED26
4	868705	4_868705_SNP [dm3] 4_848079_SNP [dm6]	A	T	3.096e^-4	0.606	INTERGENIC	transposable element FlyBase
3L	10648124	3L_10648124_SNP [dm3] 3L_10655024_SNP [dm6]	A	G	3.100e^-4	0.606	INTRON CG32066
3R	26003091	3R_26003091_SNP [dm3] 3R_30177369_SNP [dm6]	C	A	3.103e^-4	0.606	SYNONYMOUS_CODING CG1983 UPSTREAM CG15530
X	3319195	X_3319195_DEL [dm3] X_3425162_DEL [dm6]	CGAAA	C	3.118e^-4	0.607	INTRON CR44999 & 1 other
2L	19842945	2L_19842945_SNP [dm3] 2L_19842945_SNP [dm6]	C	G	3.118e^-4	0.607	INTRON sick
4	997449	4_997449_SNP [dm3] 4_976823_SNP [dm6]	T	G	3.118e^-4	0.607	UPSTREAM fuss INTRON fuss EXON sphinx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16680886	X_16680886_SNP [dm3] X_16786853_SNP [dm6]	T	C	3.126e^-4	0.608	UTR_5_PRIME CG9609 UPSTREAM Sap30	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18419839	2R_18419839_SNP [dm3] 2R_22532334_SNP [dm6]	A	G	3.130e^-4	0.608	INTRON px	TF binding site mE1_TFBS_cad
3R	25876733	3R_25876733_SNP [dm3] 3R_30051011_SNP [dm6]	A	T	3.134e^-4	0.608	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26041857	3R_26041857_SNP [dm3] 3R_30216135_SNP [dm6]	G	A	3.145e^-4	0.61	UPSTREAM CecC INTERGENIC
3R	14236469	3R_14236469_SNP [dm3] 3R_18410747_SNP [dm6]	G	A	3.156e^-4	0.611	SYNONYMOUS_CODING CG10864 UPSTREAM CG31122 INTRON CG31122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11776390	3L_11776390_SNP [dm3] 3L_11783290_SNP [dm6]	C	A	3.157e^-4	0.611	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26029665	3R_26029665_SNP [dm3] 3R_30203943_SNP [dm6]	C	T	3.163e^-4	0.612	UPSTREAM CG9743 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	20995705	2R_20995705_SNP [dm3] 2R_25108182_SNP [dm6]	A	G	3.171e^-4	0.612	INTRON lov	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	22727743	3L_22727743_SNP [dm3] 3L_22734643_SNP [dm6]	C	T	3.183e^-4	0.614	NON_SYNONYMOUS_CODING CG11241 INTRON CG11241	TF binding site mE1_TFBS_cad
3R	24024719	3R_24024719_DEL [dm3] 3R_28198997_DEL [dm6]	ATTTATTA	A	3.183e^-4	0.614	INTRON CG34354
X	10061067	X_10061067_SNP [dm3] X_10167034_SNP [dm6]	C	A	3.189e^-4	0.614	INTRON CR44894 & 1 other
3R	2732666	3R_2732666_SNP [dm3] 3R_6906944_SNP [dm6]	A	T	3.190e^-4	0.614	DOWNSTREAM Antp INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20204307	3R_20204307_SNP [dm3] 3R_24378585_SNP [dm6]	A	T	3.198e^-4	0.614	DOWNSTREAM CG33342 INTERGENIC
2R	1692515	2R_1692515_SNP [dm3] 2R_5805010_SNP [dm6]	G	T	3.200e^-4	0.614	START_GAINED dpr12 UTR_5_PRIME dpr12	TF binding site mE1_TFBS_cad
X	15146345	X_15146345_SNP [dm3] X_15252312_SNP [dm6]	A	T	3.205e^-4	0.614	INTERGENIC
2L	4690947	2L_4690947_SNP [dm3] 2L_4690947_SNP [dm6]	T	A	3.206e^-4	0.614	UPSTREAM CG3251 INTERGENIC
X	16428832	X_16428832_SNP [dm3] X_16534799_SNP [dm6]	T	C	3.210e^-4	0.614	INTERGENIC
3R	26038902	3R_26038902_SNP [dm3] 3R_30213180_SNP [dm6]	G	A	3.219e^-4	0.615	DOWNSTREAM CecB & 2 others INTERGENIC
3R	6675438	3R_6675438_DEL [dm3] 3R_10849716_DEL [dm6]	TGCTTAATATCGGCGACGA...	T	3.224e^-4	0.616	UPSTREAM CG42394 DOWNSTREAM Cad86C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	25431780	3R_25431780_SNP [dm3] 3R_29606058_SNP [dm6]	A	G	3.244e^-4	0.617	INTRON alph
2R	10621372	2R_10621372_SNP [dm3] 2R_14733867_SNP [dm6]	C	A	3.248e^-4	0.617	INTERGENIC
2L	15823084	2L_15823084_SNP [dm3] 2L_15823084_SNP [dm6]	G	T	3.248e^-4	0.617	UPSTREAM CR44601 INTERGENIC
3R	22498375	3R_22498375_SNP [dm3] 3R_26672653_SNP [dm6]	A	G	3.256e^-4	0.617	INTRON beat-VII
3L	15046523	3L_15046523_SNP [dm3] 3L_15053423_SNP [dm6]	T	C	3.257e^-4	0.617	UPSTREAM CG13461 & 1 other DOWNSTREAM CG18649 INTRON Sytbeta
2L	6292769	2L_6292769_SNP [dm3] 2L_6292769_SNP [dm6]	T	C	3.260e^-4	0.617	INTRON Ddr
2R	6448005	2R_6448005_SNP [dm3] 2R_10560500_SNP [dm6]	A	T	3.262e^-4	0.617	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	20402880	3R_20402880_SNP [dm3] 3R_24577158_SNP [dm6]	T	A	3.263e^-4	0.617	INTRON CG13624	TF binding site mE1_TFBS_Trl
3R	10187091	3R_10187091_SNP [dm3] 3R_14361369_SNP [dm6]	A	G	3.268e^-4	0.617	UTR_5_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19562380	X_19562380_SNP [dm3] X_19668347_SNP [dm6]	C	T	3.270e^-4	0.617	UPSTREAM CR44512 INTRON Zw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	16896875	X_16896875_SNP [dm3] X_17002842_SNP [dm6]	G	A	3.270e^-4	0.617	INTRON CG45002
3L	15156125	3L_15156125_SNP [dm3] 3L_15163025_SNP [dm6]	A	G	3.271e^-4	0.617	SYNONYMOUS_CODING CG7011 DOWNSTREAM CG6878	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	18339405	2R_18339405_SNP [dm3] 2R_22451900_SNP [dm6]	G	C	3.274e^-4	0.617	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	13403012	X_13403012_SNP [dm3] X_13508979_SNP [dm6]	A	T	3.281e^-4	0.618	INTRON Neto
3R	6935015	3R_6935015_SNP [dm3] 3R_11109293_SNP [dm6]	C	A	3.297e^-4	0.618	INTERGENIC
2L	11559695	2L_11559695_SNP [dm3] 2L_11559695_SNP [dm6]	C	T	3.297e^-4	0.618	INTERGENIC
3L	8328551	3L_8328551_SNP [dm3] 3L_8335451_SNP [dm6]	T	C	3.298e^-4	0.618	INTERGENIC
3L	5011159	3L_5011159_SNP [dm3] 3L_5011159_SNP [dm6]	T	C	3.299e^-4	0.618	DOWNSTREAM CG12027 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

3μg/mL survivorship phenotype phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results